LOCUS       DASQWN010000001         3929 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_377, whole genome shotgun sequence.
ACCESSION   DASQWN010000001 DASQWN010000000
VERSION     DASQWN010000001.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 3929)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3929)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3929
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_377"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..597
                     /locus_tag="VE686_00005"
     CDS             <1..597
                     /locus_tag="VE686_00005"
                     /inference="COORDINATES: protein motif:HMM:NF016800.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="O-antigen ligase family protein"
                     /protein_id="HYY82863.1"
                     /translation="SAVLGVLALVLAYCAARAVPRAALAGLALATVAALGTAPVIGDI
                     AQRLIPAAVHGELASSHSRDRVEIWRSFGAAIRAAPVAGAGFGASPKLDAASEAARVP
                     PELQILLGAGHPHNAAIQIWAELGVVGAVLTGFVLLLMLRAVSRLPFGQLTFAVPFVA
                     AACAVSLVGHGAWQGWWAASLGTAVVWFRVAARQERAP"
     gene            594..1979
                     /gene="gor"
                     /locus_tag="VE686_00010"
     CDS             594..1979
                     /gene="gor"
                     /locus_tag="VE686_00010"
                     /EC_number="1.8.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020092108.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004362 - glutathione-disulfide reductase
                     (NADP) activity [Evidence IEA];
                     GO_process: GO:0045454 - cell redox homeostasis [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione-disulfide reductase"
                     /protein_id="HYY82864.1"
                     /translation="MSDFDVDLFVIGAGSGGVRAARISALYGARVMIAEEYRVGGTCV
                     IRGCVPKKLMVYASRFADEFEDAPGFGWTVPEPSFDWATLIRNKDREIARLEGIYRTN
                     LMSAGVEIIDSRAIIEDAHTVRILTTGARVRARYILIATGAYPTLDPPIPGGEHGITS
                     NDVFELERLPERILVIGAGYIAVEFAGIFAGLGSRVTLLHRGDKLLRGFDDDIRTALA
                     EAYEKRGIDLALGLTMSRIEERAGCFDAHLSDGTVLTVDKILVATGRRPNTAKLGLEN
                     VGITIDAAGAIPVDAYSRTVTPSIYAVGDVTNRANLTPVAIREGHAFADTVFGDLPTM
                     VDHDLIPTAVFSTPEIGVVGRTEASAREAYGDIDVYKASFRAMKATLSGRDERIFMKV
                     IVDRATDKVVGVHVLGHDAGEVIQAVGIAVTMGATKADFDRTIAVHPTAAEELVTMRT
                     PWIVEKPVAVG"
     gene            2128..3513
                     /locus_tag="VE686_00015"
     CDS             2128..3513
                     /locus_tag="VE686_00015"
                     /EC_number="2.5.1.54"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012453857.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003849 - 3-deoxy-7-phosphoheptulonate
                     synthase activity [Evidence IEA];
                     GO_process: GO:0009423 - chorismate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-7-phosphoheptulonate synthase class II"
                     /protein_id="HYY82865.1"
                     /translation="MTERWSPDSWRGKPIQQAPAYPDARALEAVERQLAGFPPLVFAG
                     EARKLRRALGKVAAGEAFLLQGGDCAESFAEHSADNIRDFFRLFLQMAVVLTFAGSCP
                     VVKVGRVAGQFAKPRSAGTEVVDGVELPSYRGDIVNDIDFAAQARTPDPERQVSAYRQ
                     SAATLNLIRAFATGGYANLDNAHRWMLGFVKDSPQSSRYRELAERITETLDFMRAIGI
                     DPEVHPEMRITDFYTSHEALLLGFEQAMTRVDSTSGDWYATSGHLIWIGDRTRQLDHA
                     HVEYFRGIKNPIGMKCGPSLSADELLKLLDVLNPDNEPGRLTLICRFGVDKAPKHLPQ
                     LVQAVKREGRSVVWSCDPMHGNTVKAGSGYKTRPFERIMGEVRDFFAVHQAEGTHAGG
                     IHLEMTGKNVTECTGGARALTDADLRDRYHTYCDPRLNAEQALDIAFLTAELIKRERQ
                     GRERPRVEAAE"
BASE COUNT          620 a         1345 c         1328 g          636 t
ORIGIN      
        1 tcggccgtcc ttggggtcct cgccctggta ttggcatact gcgccgcgcg cgcggtgccc
       61 cgcgcggcgc tggcaggcct ggcgcttgcc acagtagcgg cgctcgggac cgcgcccgtg
      121 atcggcgaca tcgcccagcg cctaatcccc gcggcggttc atggcgagct cgcctccagt
      181 cattcgcgcg atcgcgtcga gatttggcgc agcttcggcg cggctatccg cgccgcaccg
      241 gtcgcgggcg cgggcttcgg cgcgagccca aagctcgacg cagcgtcgga ggccgcacgg
      301 gttccgcccg agctgcagat cctgctcggc gccgggcatc cccacaacgc agctatccag
      361 atctgggccg agctcggcgt cgtaggggcg gtgcttaccg gcttcgtgct cctcctcatg
      421 ctgcgcgcgg tgtcgcggct gccgttcggg cagctcacgt tcgcggtgcc gttcgtcgcg
      481 gccgcctgcg cggtgtcgct cgtcggacat ggggcgtggc aggggtggtg ggcggcgagc
      541 ctcggcaccg ccgtcgtgtg gttccgcgtc gccgcgcggc aggagcgcgc gccatgagcg
      601 atttcgacgt cgacctgttc gtcatcgggg ccggttcggg cggggtgcgc gcggcgcgca
      661 tctcggctct gtacggcgct cgcgtgatga tcgccgagga gtatcgagtc ggcggcacct
      721 gcgtgatccg gggctgcgtg ccgaagaagc tgatggtcta cgcgagccgc tttgccgacg
      781 agttcgagga cgccccgggc ttcggctgga ctgttcccga gccgagcttc gactgggcca
      841 cccttatccg caacaaggat cgcgagatcg cccggctgga gggcatctat cggacgaacc
      901 tcatgagcgc cggcgtcgag atcatcgaca gccgggccat tatcgaggac gcgcacaccg
      961 tgcgcatcct gacgaccggc gcccgcgttc gcgcccgcta tattcttatc gcgacggggg
     1021 cctacccgac gctcgatcct cccatcccag gcggcgagca cggcatcacc tcgaacgacg
     1081 ttttcgagct cgagcggctg cccgagcgga ttctcgttat tggggcgggg tacatcgcgg
     1141 tcgagttcgc cggcatcttc gccgggctcg ggtcgcgcgt gacgcttctg caccggggcg
     1201 acaagctcct gcgcggcttt gacgatgaca tccgcacggc gctcgcggag gcctatgaaa
     1261 aacgcggcat cgacctcgct ctcggcctga caatgtcgcg gatcgaggag cgggcgggct
     1321 gcttcgacgc ccacttgtcc gacggcacgg tgctcaccgt tgacaagatc ctcgtcgcca
     1381 ccggccggcg gccgaacacg gcgaagcttg gcctcgagaa cgtgggcatc acgatcgacg
     1441 ccgccggggc aatcccggtc gacgcctatt cgcgcaccgt gacgccttcg atctacgccg
     1501 tcggagacgt cacaaatcgg gcaaacctca ccccggtggc catccgcgag ggccacgcct
     1561 tcgctgacac ggtcttcggc gacctgccca ccatggtcga tcacgacctc atcccgacgg
     1621 ccgtgttctc cacgccggag atcggggtcg tcggccgcac cgaggcgagc gccagggagg
     1681 cctacgggga tatcgacgtg tacaaggcga gcttccgcgc catgaaggcg acgctctcgg
     1741 gccgcgacga gcgcatcttc atgaaggtca tcgtcgacag ggccacggat aaggtggtcg
     1801 gggtccacgt gctcggccat gacgcgggcg aggtcatcca ggccgtcggc atcgcagtca
     1861 ccatgggcgc cacgaaagcc gacttcgacc gcaccatcgc ggtgcacccg accgccgccg
     1921 aggaactcgt cacgatgcgc acgccgtgga tcgtcgagaa gcccgtggcc gtaggctagc
     1981 ccgagccgct cacgtgctgc cgattaagcc gcagcggcgg cggggctttt cgcctcgcca
     2041 gggtgcgccc ggctcgctat aagccccgac tttacgcgag aaaacctggg cgcaaagcgc
     2101 ttgtcgcgga cgtggggagc tttagacatg accgagcggt ggtcgcccga tagctggaga
     2161 ggaaagccca tccagcaggc gccggcctat ccggacgccc gagccctcga ggcggtcgag
     2221 cgccagctcg ccgggtttcc cccgctggtt tttgcgggcg aggcgcgcaa gctgagacgg
     2281 gcgctcggca aggtcgcggc cggcgaggcg tttctgctcc agggcggcga ctgcgccgag
     2341 agcttcgccg agcattcggc tgacaacatc cgcgatttct tccgcctgtt cctgcagatg
     2401 gccgtggtgc tcacgttcgc gggctcctgc cccgtggtga aggtcggccg cgtcgcgggc
     2461 cagttcgcga agccgcgttc cgccgggacc gaggtggtgg atggggtcga gctgccgagc
     2521 tataggggcg atatcgtaaa cgacatcgac tttgccgcgc aggcgcgcac tcctgatccg
     2581 gaacggcagg tctcggccta ccggcaatcg gcggccacac tcaacctgat cagggccttc
     2641 gccaccggcg ggtacgccaa cctcgacaac gcgcatcgct ggatgcttgg attcgtgaag
     2701 gattcgccgc agtcgtcgcg gtaccgcgag cttgccgagc gcatcaccga gacgctcgac
     2761 ttcatgcggg cgatcggcat cgatccggaa gttcacccgg agatgcgcat cacggacttc
     2821 tacaccagcc acgaggcgct cctgctcggc ttcgagcagg ccatgacgcg ggtcgattcc
     2881 acctccggcg attggtacgc gacctccggc cacctgatct ggatcggtga ccgcacgcgc
     2941 cagctcgacc atgcgcacgt tgagtacttc cgcggcatca agaacccgat cggcatgaaa
     3001 tgcgggccgt cgcttagcgc cgacgagctc ctcaagctcc tcgacgtgct caaccccgac
     3061 aacgagcccg gccgcctcac gctgatttgc cgcttcggcg tcgacaaggc gcccaagcac
     3121 ctgccccagc tcgtccaggc ggtgaagcgc gaggggcgct cggtcgtgtg gtcgtgcgat
     3181 cccatgcacg gcaacaccgt gaaggcgggc tcgggctaca agacccggcc cttcgagcgg
     3241 atcatgggcg aggtgcgcga cttcttcgcg gtgcaccagg cggaagggac ccatgcgggc
     3301 ggcatccacc tggagatgac cggcaagaac gtgaccgagt gcaccggcgg cgcccgggcg
     3361 ctcacggacg cggacctgcg cgaccgctac cacacctatt gcgacccgcg cctcaacgcc
     3421 gagcaggcgc tcgacatcgc cttcctgacc gccgagctga tcaagcgtga gcggcagggg
     3481 cgcgagcgcc cgcgggtcga ggcggcggaa tagggctcaa aagaaaggga cggcgttcca
     3541 ccgtcccttt tcgcgctagg ggctcgcgcc tgccttagct gagccagccc atgaagaaca
     3601 ggatcaggat gatcggcagc ggaatgccga tgagccacag aagaccgcct ttcagcatcg
     3661 tcaacctccc aagttggttg ttgtgacaac gacgcatcgg gggtgcggtt cccggtcctt
     3721 caacttaggt taatgatgcg gcacattacg cggcgccgcg ttgcgggcgt cgggcgtgcg
     3781 cgttaaaccc ggtccatggc ccgcctcgac acgttcaaga tcgctctcgc gcagctcaac
     3841 cctaccgtcg gcgacgtcgc cggcaatctc gcaaaggcgc gcgcggcacg ggccgaagcg
     3901 gcccggctcg gcgccgacct cgtgatgta
//
LOCUS       DASQWN010000002         2693 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_893649, whole genome shotgun sequence.
ACCESSION   DASQWN010000002 DASQWN010000000
VERSION     DASQWN010000002.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2693)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2693)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2693
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_893649"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..542
                     /locus_tag="VE686_00020"
     CDS             <1..542
                     /locus_tag="VE686_00020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015927097.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="translational GTPase TypA"
                     /protein_id="HYY82866.1"
                     /translation="RPSGGNRQRLVFYAPTRGLIGYQGELMTDTRGTAIMNRLFHAYE
                     PYKGEIPGRRNGVLISNEAGEAVAYAMWNLEDRGPMMIEPGWKVYRGMIVGEHTREND
                     LEVNVLKGKKLTNIRTTSKDEAVRLTPPIRMTLEKSLAWVQDDELVEVTPKSIRLRKA
                     ILDPNDRKRAERSKEALSA"
     gene            1014..1301
                     /locus_tag="VE686_00025"
     CDS             1014..1301
                     /locus_tag="VE686_00025"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY82867.1"
                     /translation="MRSSFGLAALVAFAAVLGATSASAAGVMRQLEGAEITKKFTGME
                     FTDDVHWAYVFRRGGTLDVFSMGSVGTGTWRVQGNELCLNRGKGEARCYVR"
     gene            1438..2322
                     /locus_tag="VE686_00030"
     CDS             1438..2322
                     /locus_tag="VE686_00030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012385483.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1259 domain-containing protein"
                     /protein_id="HYY82868.1"
                     /translation="MRATTSSIAAFLSLTLAGPALADPDWKAVAQALGKEGAAQGGVY
                     RVGFPRSDLKVTLDGTEIKPGLALGGWVAFAPIGNNDAMIMGDLVLTQDEVNPVMKKL
                     IDAGLEITALHNHLLRSEPATMYMHVGGHGDAVKLAAALREGLSASKTPMGAPAAAAP
                     APEIDFDTAAVDAAMGRRGKANGPIYQFSISRAGPVKDAGMVVPEAMGSAIAINFQPT
                     GGGKAAITGDFVLTADEVNPTLKALRANDIEVTALHSHMLDEQPRLYFMHFWANDDAE
                     KLAKGLAAALSHVKIAKS"
BASE COUNT          491 a          877 c          913 g          412 t
ORIGIN      
        1 tgcgcccctc cggcggcaac cgtcagcgtc tcgtgttcta cgctcccacc cgcggcctca
       61 tcggctatca gggcgagttg atgaccgaca ctcgcggcac cgcgatcatg aaccgcctgt
      121 tccacgccta cgagccctac aagggcgaga ttcccggccg ccgcaacggc gtcctgatct
      181 cgaacgaggc cggcgaggcc gtcgcctacg ccatgtggaa cctcgaggat cgcggcccga
      241 tgatgatcga gcccggctgg aaggtctatc gcggcatgat cgtcggcgag cacacccgcg
      301 agaacgacct cgaggtgaac gtgctcaagg gcaagaagct caccaacatc cgcaccacct
      361 cgaaggacga ggccgtgcgc ctcaccccgc cgattcgcat gacgctggag aagtcgctcg
      421 cctgggtcca ggacgacgag ctcgtcgagg tcaccccgaa atcgatccgc ctgcgtaagg
      481 cgatcctcga ccccaacgac cgcaagcgcg ccgagcgctc aaaggaagcc ctcagcgcct
      541 aagcggcctc cggcatgcgc tgcgcgcatg ccacgcaccg ccatcatcat cggcggtcag
      601 aggagcgcgc tcagaggaga accgcgcgca atctcatcat ggtgaccgcc gagcggcgca
      661 ccatcgtcat gacggcgttc gggcgctgac cctggtgggc gatgccggag ggccatctcg
      721 ttactccgag tcgagcactc gaggaaatcg agtcgcaaac ggcaaggcct tggtgcggcg
      781 gcagtgtggg tgcgttcggc ggtacatgcg agcgaacggt gaccctcgtt gcgccgaaga
      841 gcgcctgccc gaacgggcac gtggagggtt gccggaaact gcctggacct caccgctacc
      901 ggatcgcgtt gctctcaggt gtgggcggcg ggtgcgggcg tgcagcttcg tcgcgagggc
      961 gagcggtcgc aagacgccac tttccagaag actggccagt gaagcaaagc ccgatgcgga
     1021 gcagctttgg attggcagca ctcgtcgcct tcgccgcggt actcggcgcg acttcggcca
     1081 gcgcggcggg cgtcatgcga cagctcgaag gcgcagagat cacgaagaag ttcacgggca
     1141 tggagttcac ggacgacgtt cactgggcgt acgttttccg gcgcggcgga accctcgacg
     1201 tgttctcgat ggggagcgtc ggcacaggaa cctggcgggt gcagggtaac gaactgtgcc
     1261 tcaatcgagg aaaaggagag gcgcgctgct acgtccggta gcaaggtcga gctgcggcgc
     1321 gacggcgaat tgcccgacga gggcgtcgtg caaaggccct cgacccgtgt ccgttagtcg
     1381 acggtgctgc gaggccgcaa gcgcccaagc aaaatctctg gcggaaggag acttacgatg
     1441 cgtgcgacga ccagcagtat agcggccttt ctgagcctca cgctcgccgg gcccgccctc
     1501 gccgatccgg attggaaggc cgtcgcccag gcccttggta aggaaggcgc cgcgcagggc
     1561 ggcgtctacc gcgtcggctt cccgcgcagc gacttgaagg tcacgctcga tggaaccgag
     1621 atcaagccgg gcctggcgct cggcggctgg gtcgcgtttg cgccgattgg caacaacgat
     1681 gccatgatca tgggcgacct cgtgctcacg caggatgagg tcaacccggt gatgaagaag
     1741 ctcatcgacg ccgggcttga gatcacggct ctccacaacc acctcctccg atcggagccc
     1801 gcgacgatgt acatgcacgt cggcggccac ggggacgccg tgaagctcgc cgccgcgctg
     1861 cgggaggggc tctccgccag caaaacgccg atgggcgcgc cggctgcggc cgcgccagcg
     1921 cccgagatcg acttcgacac cgccgcggtc gacgccgcga tgggccgtag aggcaaagcg
     1981 aacgggccga tctaccagtt ctccatttcg cgggccgggc ccgtgaagga cgccgggatg
     2041 gtcgtgccgg aggcgatggg gtcggcgatc gccattaact tccagccgac tggcggcggc
     2101 aaggccgcga tcacaggcga ctttgtcctc accgctgacg aggtgaaccc gacgctcaag
     2161 gccctgcgcg ccaacgacat cgaggttacg gcgctgcata gccacatgct cgacgagcag
     2221 ccgcggctct acttcatgca cttctgggcg aacgacgacg ccgagaaact ggccaagggc
     2281 ctcgccgccg ctctctcgca cgtgaagatc gcgaagtcct gatcccagcg caggcaacgg
     2341 ggaggttacg ggaggctctt ccaggcgggc atacggggac gggccttgat gtccaatgtc
     2401 cgctcttgga catagctggc cctcaatcaa ggtccgcttt gggcgcgaag cggccattcg
     2461 cggccttatc agtgcacgcc tagcgcggcg ggcggacgct ttccatggag agctccggcc
     2521 aacggatctg agttttagat atcgagaagg ccggtttact tcacgtgcgt cccaggaccg
     2581 ggggcgagcg tgggccggac gagcaattct cgccgggacg aggcgctgcg ggccttcatc
     2641 gtcgccacgc gcagcggccg gcttgcgcca ggttgacgtc gcggagcggc tcg
//
LOCUS       DASQWN010000003         3055 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_992978, whole genome shotgun sequence.
ACCESSION   DASQWN010000003 DASQWN010000000
VERSION     DASQWN010000003.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 3055)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3055)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3055
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_992978"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..263)
                     /locus_tag="VE686_00035"
     CDS             complement(<1..263)
                     /locus_tag="VE686_00035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012335692.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HYY82869.1"
                     /translation="MHFDLVDLSLFRHVVEAGSITHGADRAHLALAAASTRIRHMEES
                     LGAPLLVRSRQGVTPTPAGRTLLQHARAMLAQAARLREDLGAYA"
     gene            485..883
                     /gene="sdhC"
                     /locus_tag="VE686_00040"
     CDS             485..883
                     /gene="sdhC"
                     /locus_tag="VE686_00040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019404940.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0045282 - plasma membrane succinate
                     dehydrogenase complex [Evidence IEA];
                     GO_function: GO:0000104 - succinate dehydrogenase activity
                     [Evidence IEA];
                     GO_process: GO:0006099 - tricarboxylic acid cycle
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="succinate dehydrogenase, cytochrome b556
                     subunit"
                     /protein_id="HYY82870.1"
                     /translation="MAEAKAPAPRPLSPHLQIYGWSWTMTMSIFHRVTGSANYFGAIL
                     VAVWLIALASGPQAFDSVQWFFGSILGRLVLFGYTWSLMHHMLGGVRHLVWDFGHGME
                     PGTRINMARYTLVASIALTLAIWVVAYAIR"
     gene            895..1308
                     /gene="sdhD"
                     /locus_tag="VE686_00045"
     CDS             895..1308
                     /gene="sdhD"
                     /locus_tag="VE686_00045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018044519.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0045282 - plasma membrane succinate
                     dehydrogenase complex [Evidence IEA];
                     GO_function: GO:0000104 - succinate dehydrogenase activity
                     [Evidence IEA];
                     GO_process: GO:0006099 - tricarboxylic acid cycle
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="succinate dehydrogenase, hydrophobic membrane
                     anchor protein"
                     /protein_id="HYY82871.1"
                     /translation="MADNRADTRIDMRTPLARVKGLGAAGHGATHWWVHRLTAVSNVP
                     LIIAFVIILAAMPGRSYAQAVAIISHPLVAILLILCVLSVTNHMRMGMQIIIEDYVHD
                     RGWKLLSMAANNFYAVVIAVACLWAILKISFGRIV"
     gene            1322..>3055
                     /gene="sdhA"
                     /locus_tag="VE686_00050"
     CDS             1322..>3055
                     /gene="sdhA"
                     /locus_tag="VE686_00050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004446645.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016627 - oxidoreductase activity, acting
                     on the CH-CH group of donors [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA];
                     GO_process: GO:0006099 - tricarboxylic acid cycle
                     [Evidence IEA];
                     GO_process: GO:0022900 - electron transport chain
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="succinate dehydrogenase flavoprotein subunit"
                     /protein_id="HYY82872.1"
                     /translation="MATNGQAGNGAAAPGINGRAYQIVDHTFDVVVVGAGGAGLRATV
                     GCSQAGLRTACVTKVFPTRSHTVAAQGGISAALGNMGPDDWRWHMYDTVKGSDWLGDQ
                     DSIEYLCRNAPEAVYELEHWGVPFSRTDEGKIYQRPFGGMTTDYGKGTAQRTCAAADR
                     TGHAILHTLYGQAVRNQTNFFIEYFALDLMMEEGRCRGVVALNMTTGEIHRFRAQMTI
                     LATGGYGRAYFSATSAHTCTGDGNAMVLRAGLPLQDMEFVQFHPTGIYGAGCLITEGS
                     RGEGGYLTNSEGERFMERYAPSAKDLASRDVVSRAMTMEIRAGRGVGKDRDHIHLHLD
                     HLDPKILHERLPGISESAKIFAGVDVTKEPIPVLPTVHYNMGGIPTNFHGEVLTLKDG
                     NPDTVVPGLMALGEAACVSVHGANRLGSNSLIDLVVFGRAAGLRCADIVEPNGRHPEL
                     PKDADELALSRLDRFRHAEGATPTAQLRDSMQKTMQNNCAVFRTGEVLEEGRGLIHEV
                     WRGERDIHVTDRSLIWNSDLVETLEFDNLIGQAVVTMESAANRPESRGAHAREDYPDR
                     DDKNWMKHTLSW"
BASE COUNT          489 a         1098 c         1015 g          453 t
ORIGIN      
        1 gcgtaggcgc cgaggtcctc gcgcaggcgg gccgcctgcg ccagcatggc gcgggcgtgc
       61 tggagcaggg tgcggccggc gggtgtcggc gtcacgccct ggcggctgcg caccaggagc
      121 ggcgccccga gcgactcctc catgtggcgg atgcgggtcg aggcggccgc gagcgcaagg
      181 tgcgcccgat cggcgccgtg cgtgatggag cccgcctcga cgacatggcg gaacaggctg
      241 agatcgacga gatcgaagtg catgctgcgg tccgagcctt cgtggcccga gaaggctaag
      301 tccgtcacaa accgattgtc gagacgccag tgcctgaggc agggttcgtc gatcgcgaag
      361 cggcgaccga cgggcccggt gtcgcgcgac ccgcggaatc gggtttgccg cgcggccccg
      421 cttcgattag gaaccgccgc ggttccggcg cggtctgccg ctcgcgccga cgaggagacg
      481 atgcatggcc gaggcgaagg cgcctgcccc aaggcccctg tccccccatc tccagatcta
      541 cggctggagc tggacgatga cgatgtccat cttccaccgc gtgacgggca gcgccaatta
      601 tttcggcgcc atcctcgtgg ccgtgtggct gatcgccctc gcctccggcc cgcaggcctt
      661 cgacagcgtg cagtggttct tcggctccat cctcgggcgg ctggtcctgt tcggctacac
      721 ctggtcgctc atgcaccaca tgctcggcgg cgtgcgccac ctggtgtggg acttcgggca
      781 cggcatggag cccggcaccc gcatcaacat ggcccgctac accctcgtcg cctcgatcgc
      841 cctgacgctg gcgatttggg tggtcgcgta cgcgatccgc tgaaggagcg agccatggcc
      901 gacaaccgag ccgacacgcg gatcgacatg cggaccccgc tcgcgcgggt gaagggcctc
      961 ggcgccgcgg ggcacggggc cacgcactgg tgggtccatc gcctcacggc cgtgtcgaac
     1021 gtgccgctca tcatcgcctt cgtcatcatc ctggcggcca tgcccggccg ctcctatgcg
     1081 caagcggtgg cgatcatctc gcacccgctt gtcgccatcc ttctgatcct ctgcgtgctg
     1141 tcggtcacga accacatgcg catgggcatg cagatcatca tcgaggacta cgtccacgac
     1201 cgcggctgga agctcctcag catggctgcg aacaatttct acgccgtcgt gatcgccgtc
     1261 gcctgcctgt gggcgattct caagatcagc ttcggacgca tcgtctagcg gagttccgac
     1321 catggccacc aacggacaag ccggcaacgg cgccgcggcg cccggcatca acggccgcgc
     1381 gtaccagatc gtcgaccaca ccttcgacgt cgtggtggtc ggggccggcg gcgccggcct
     1441 gcgcgcgacc gtcggctgtt cgcaggcggg cctgcgcacc gcctgcgtga ccaaggtctt
     1501 cccgacccgg tcgcacacgg tcgccgccca gggcggcatc tcggcggcgc tcggcaacat
     1561 ggggccggac gactggcgct ggcacatgta cgacaccgtc aaaggctcgg actggctcgg
     1621 ggaccaggac tcgatcgagt acctctgccg caacgcgccc gaggccgtgt acgagctcga
     1681 gcactggggc gtgccgttct cgcgcaccga cgagggcaag atctaccagc gcccgttcgg
     1741 cggcatgacg accgactacg gcaagggcac ggcgcagcgc acctgcgcgg ccgcggatcg
     1801 caccggccac gccatcctgc acacgctcta cggccaggcg gtgcgcaacc agaccaactt
     1861 cttcatcgag tacttcgccc tcgacctgat gatggaggag ggtcgctgcc gcggcgtcgt
     1921 cgccctcaac atgacgaccg gcgagatcca ccgcttccgc gcgcagatga ccatcctggc
     1981 gaccggcggc tacgggcgcg cgtatttctc ggccacctcg gcgcacacct gcacgggcga
     2041 cggcaacgcc atggtgctgc gcgccggcct gcccctgcag gacatggagt tcgtgcagtt
     2101 ccacccgacc ggcatctacg gcgccggctg cctgatcacc gaagggtcgc gcggcgaagg
     2161 cggctatctc acgaactcgg aaggcgagcg cttcatggag cgctacgcgc cctccgccaa
     2221 ggacctcgcc tcacgcgacg tggtctcgcg cgccatgacg atggagatcc gcgccggccg
     2281 cggcgtcggc aaggatcgcg accatatcca ccttcacctc gaccacctcg acccgaagat
     2341 cctgcacgag cgcctgcccg gcatctcgga gagcgccaag atcttcgccg gcgtcgatgt
     2401 caccaaggag ccgatcccgg tgctgccgac cgtgcactac aacatgggcg gcatcccgac
     2461 gaacttccac ggcgaggtcc tcaccctgaa ggacggcaat cccgacacgg tggtgccggg
     2521 gctgatggcg ctcggcgagg ccgcctgcgt ctcggtgcac ggcgcgaacc ggctcggctc
     2581 gaactcgctc atcgacctcg tggtcttcgg ccgcgccgcg gggctgcgct gcgccgacat
     2641 cgtcgagccg aacgggcgtc acccggagct gccgaaggac gccgacgagc tcgcgctctc
     2701 gcgcctcgac cgcttccgcc acgccgaggg cgccacgccg acggcgcagc tgcgcgacag
     2761 catgcagaag accatgcaga acaactgcgc cgtcttccgc accggcgagg tgctcgagga
     2821 aggccggggc ctcatccacg aggtctggcg cggcgagcgc gacatccacg tcaccgaccg
     2881 ctcgctgatc tggaactcgg acctcgtcga gacgctcgaa ttcgacaacc tgattggcca
     2941 ggcggtggtg acgatggaga gcgccgccaa ccggcccgaa tcccgcggcg cgcacgcccg
     3001 cgaggattat cccgatcgcg acgacaagaa ctggatgaag cacaccctga gctgg
//
LOCUS       DASQWN010000004         3166 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1191540, whole genome shotgun sequence.
ACCESSION   DASQWN010000004 DASQWN010000000
VERSION     DASQWN010000004.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 3166)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3166)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3166
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1191540"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..475)
                     /gene="glyA"
                     /locus_tag="VE686_00055"
     CDS             complement(<1..475)
                     /gene="glyA"
                     /locus_tag="VE686_00055"
                     /EC_number="2.1.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019401186.1"
                     /note="catalyzes the reaction of glycine with
                     5,10-methylenetetrahydrofolate to form L-serine and
                     tetrahydrofolate; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydroxymethyltransferase"
                     /protein_id="HYY82873.1"
                     /translation="MSASGAVNQHLSNSFFSARLADADPEIARAIELELGRQRDEIEL
                     IASENIVSRAVLEAQGSVMTNKYAEGYPGRRYYGGCQFVDVAETLAIERACRLFDCRF
                     ANVQPNSGSQANQAAFMAMMKPGETFLGIQLSSGGHLTHGMKLNASAIFYKPEFYE"
     gene            complement(619..966)
                     /locus_tag="VE686_00060"
     CDS             complement(619..966)
                     /locus_tag="VE686_00060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011089924.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RidA family protein"
                     /protein_id="HYY82874.1"
                     /translation="MTITRNIRTPIMHRAVEANGFVFVGGTIADDTSVSMGEQTRNIL
                     GKIAGYLREAGSDTSKVVSASIFVTDLSQKKEMDAVWIEFFGDHLPARATVGVADLGG
                     SALIEVVVTAVKA"
     gene            complement(993..2105)
                     /locus_tag="VE686_00065"
     CDS             complement(993..2105)
                     /locus_tag="VE686_00065"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012042063.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0071949 - FAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HYY82875.1"
                     /translation="MTVRADAIIIGGGIHGCSTALHLCLRGLRPVLIEKDYAGRHASG
                     VNAGGVRQLARDVAEIPLSIRSMDIWEDVQELVGDACEFDSHGQVLVAEDEAELEMCR
                     ERVADLTLRGFTHEELIDGRELRRLVPAVAETCPGGIVSRRDGAANPARATTAFRRKA
                     EQLGTAVREGVPATNVRREGKLWRVDAGGETFEAPVLVNAAGAWGGAIAAALGEPVPV
                     ATVAPMLMITSPVPAFIEPVVILRGRKLSFKQFANGTVLIGGGHLATPYPDTGETVLD
                     WRKLQESARTVWELFPVMRDATVVRAWAGIEARTKDDLPVIGPSAKHDGLFHQFGFSL
                     HGFQLGPGTGAVMAELIATGNTNTPIDGLRIERFAS"
     gene            complement(2105..>3166)
                     /locus_tag="VE686_00070"
     CDS             complement(2105..>3166)
                     /locus_tag="VE686_00070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009029788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="(2Fe-2S)-binding protein"
                     /protein_id="HYY82876.1"
                     /translation="TGALERPFPVPGWTLPGVMTAGAAQTMLKSSGLVPDGPTVMAGQ
                     GPLLWLLAAQILRMGGRIDLVLDTTDRGNYWRAARYAAAFMLSPYFFKGLAMMREVRA
                     KTRVVARVTSIAAAGDGRVESVTYEAGGKRTTLPVELLLLHQGVVPNVNLAMAAGVKH
                     RWDDVQLCWAPVLDANGATSVEGIAVAGDGAGIGGVLSAVERGRIAARAAVEALRPDA
                     AGKVPAMEALRKALARVERGRAFLDVLFQPPTQFRVPQGDTIVCRCEEVTAQDILDSV
                     AIGATGPNQLKAYRRTGMGPCQGRLCGLTVTELMAQARGKSPEEIGYYRLRAPVKPIT
                     LAELASLPKTDAATAAVVR"
BASE COUNT          473 a         1108 c         1077 g          508 t
ORIGIN      
        1 gctcgtaaaa ctcgggcttg tagaagatgg ccgacgcgtt cagcttcatt ccgtgcgtca
       61 ggtgcccgcc ggacgaaagt tggattccga gaaatgtctc gccgggcttc atcatcgcca
      121 tgaacgccgc ctggttggcc tggctgcccg agttcggctg gacgttggcg aagcggcagt
      181 cgaagaggcg acaggcccgc tcgatcgcaa gggtctcggc gacgtcgacg aactggcagc
      241 caccgtagta gcggcggccc gggtaccctt ccgcgtactt gttggtcatc acggagccct
      301 gcgcctcgag cacggcgcgg gacacgatgt tctcggacgc gatcagctcg atctcgtcgc
      361 gttgccggcc gagctcgagc tcgatggccc gggcgatctc gggatcggcg tccgcaaggc
      421 gcgcggaaaa gaagctgttc gacagatgct ggttcaccgc cccgctcgcg ctcatgacgc
      481 cctcgccgct cgttcttcag gtgcccgtgg cgcccatata ggaggatcgg tgccgcgccg
      541 cagcaaaatc ttggcgggcg gccaccgcag gcttgtcgca ggccggcgct ccgtttctcc
      601 cctctccact cgtcgtcttc aggccttcac ggccgtcacc acgacctcga tcagcgcgct
      661 gccgccgagg tccgcgacgc cgacggttgc gcgcgcgggc aggtggtccc cgaagaattc
      721 gatccagacc gcgtccatct ccttcttctg cgacaggtcg gtgacgaaga ttgacgccga
      781 cacgaccttc gaggtgtcgc tccccgcctc gcgcaggtag ccggcgatct tccccaagat
      841 gttgcgggtc tgctcgccca tggaaacgct ggtgtcgtcg gcgatggtgc cgccgacgaa
      901 gacgaagccg tttgcctcga cggcgcggtg catgatcggg gtgcggatgt ttcgcgtgat
      961 ggtcatggcg tgtttgtcct ctcgttgatt gatcaggaag cgaagcgctc gatgcgcaag
     1021 ccgtcgattg gcgtgttggt atttcccgtg gcgatgagct cggccatgac ggcgccggtg
     1081 cccggtccga gctggaagcc gtgcagcgag aacccgaact ggtgaaacag gccatcgtgc
     1141 ttcgcgctgg ggcctatcac gggcagatcg tccttggtgc gcgcctcgat accggcccag
     1201 gcgcgcacga ccgtggcatc gcgcatcacc gggaagagct cccatacggt ccgggcgctc
     1261 tcctggagct tgcgccagtc gagcaccgtc tcaccggtgt cggggtacgg cgtcgcgagg
     1321 tggccgccgc cgatcagcac ggtgccgttg gcgaactgct tgaacgacag cttgcgcccc
     1381 cggaggatga cgaccggctc gatgaacgcc ggcaccggcg aggtgatcat cagcatcggc
     1441 gcgaccgtcg cgaccggcac cggctccccg agcgccgccg cgattgcgcc gccccatgcg
     1501 cctgccgcgt tgacgagcac cggcgcctcg aaggtttcgc ccccggcgtc tacgcgccag
     1561 agcttgccct cgcggcggac gttcgtggcg ggaacgcctt ctcggaccgc ggtcccgagc
     1621 tgctccgcct tgcgccggaa ggccgtggtt gcgcgcgccg ggttcgccgc gccgtcgcgc
     1681 cgcgacacga tcccgcctgg gcaggtctcc gcgacggcgg gcacgagccg gcgcaactcg
     1741 cgtccgtcga taagttcctc gtgcgtgaat ccgcgcaggg tgagatcggc gacgcgctcg
     1801 cggcacatct cgagctcggc ttcgtcctcg gcgacgagga cctgcccgtg gctgtcgaac
     1861 tcgcaagcgt ctccgacgag ctcctgcacg tcctcccaga tgtccatgga gcggatcgag
     1921 agggggatct cggcgacgtc gcgcgcgagc tggcgcacgc cgccagcgtt cacgcccgag
     1981 gcatggcggc cggcataatc cttctcgatc agcaccggcc gcagcccgcg caggcacagg
     2041 tgcagcgcgg tggaacagcc gtggatgccg ccgccgatga tgatggcatc ggctctgacc
     2101 gtcatcagcg caccacggcg gccgtggcgg cgtcagtctt cggcagcgac gcaagctcgg
     2161 caagggtgat cggcttcacg ggcgcccgca ggcggtaata gccgatctcc tccggcgact
     2221 tgccgcgtgc ctgcgccatg agctccgtga ccgtcagccc gcagagccga ccctggcacg
     2281 ggcccattcc ggtacggcga taggccttga gctggttcgg ccccgtggcg ccgatagcga
     2341 ccgagtcgag gatgtcctgt gccgtcacct cctcgcagcg gcacacgatg gtgtcgcctt
     2401 gcggaacgcg gaactgcgtc ggcggctgga acagcacgtc gaggaaggcg cgcccacgct
     2461 ccacgcgtgc gagcgccttg cgcagcgctt ccatcgccgg gaccttcccg gccgcatccg
     2521 gcctcagtgc ctcgacggcg gcgcgcgccg cgatgcgccc acgctcgacg gccgacagga
     2581 cgccgccgat gcccgctccg tcacccgcaa ccgcgatgcc ctcgacggag gtggcgccgt
     2641 tcgcgtcgag cacgggggcc cagcagagct ggacgtcgtc ccaccggtgc ttcacgccgg
     2701 ccgccatggc gaggttcacg ttcggcacca cgccctgatg cagcaggagg agctcgacgg
     2761 ggagcgtggt gcgcttcccg ccggcttcgt aggtgacgct ctccacgcgg ccgtcacccg
     2821 cagcggcgat gctcgtcacg cgggcgacca cacgcgtctt ggcacggacc tcgcgcatca
     2881 tggcaagacc cttgaagaag tagggcgaga gcatgaatgc ggccgcgtac cgggccgcgc
     2941 gccagtagtt gccgcgatcc gtggtgtcga ggacgagatc gatgcgcccg cccatgcgca
     3001 ggatttgcgc cgcgagcagc cacagaagcg gcccctgccc tgccatcacc gtcgggccgt
     3061 ccggcaccaa gccggaggat ttaagcatcg tctgcgccgc accggcggtc atcacgcccg
     3121 gaagcgtcca gcccggcacc ggaaaggggc gctccagggc gcccgt
//
LOCUS       DASQWN010000005         2087 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1092562, whole genome shotgun sequence.
ACCESSION   DASQWN010000005 DASQWN010000000
VERSION     DASQWN010000005.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2087)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2087)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2087
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1092562"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1275)
                     /locus_tag="VE686_00075"
     CDS             complement(<1..1275)
                     /locus_tag="VE686_00075"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxypeptidase-like regulatory
                     domain-containing protein"
                     /protein_id="HYY82877.1"
                     /translation="MGFRDILFSGVAAVGIAAASPSSAQGPAAAQVAIDKDDIGGVVT
                     GPRGPEAGVWVIAETTDLPTKYAKSVVTDDQGRYVLPDLPVANYEVWVRGYGLVDSPK
                     MRAKPGQHLDHAAVAAPNERAAAHYYPAIYWYAMLQMPPAKDFGGATEIPKEISRETW
                     RQRMGNVDCVGCHQLGQESTRTVPAQLGEFNSGAEAWMRRVGSGHTGEFMVNRLAGQL
                     GGVPFKYFGEWTDRIAQGDLPKAKPERPKGVERNVVVTSWEWGSEKTFIHDLISSDRR
                     NPTVNAYGKLYGSPEYSSDDMPILDPKTHTATTFRMTVLDPNGPESFGPPFHASAAPT
                     PTMPSPYWGEEKIWSQRANNHNGMFDKQGRVWFAASVRGNDNPAFCKQGSDHPSAKVF
                     PIAQSGRQASMLDPKTMKYTLIDTCFGTHHPQF"
     gene            1398..1940
                     /locus_tag="VE686_00080"
     CDS             1398..1940
                     /locus_tag="VE686_00080"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY82878.1"
                     /translation="MRPRLAGPSTRRCALLAALMLLPQVARADLAWWLTERFKPAATA
                     YEGLSARDIHPAWARFSVLTYAMLPHAAHADVAWMRREGFAFEKDGDFNADGRPDRAL
                     AGVYRDKAGRTGRFLLVLERQGDKWRKAFLHTEPGTPGFSIVTGPPGEVHWGTCMECD
                     AGAVLHPRGRTYAFEKGRGD"
BASE COUNT          289 a          751 c          725 g          322 t
ORIGIN      
        1 gaactgcgga tggtgggtcc cgaagcacgt gtcgatgagc gtgtacttca tggtcttagg
       61 gtcgagcatc gaggcctgcc ggcccgattg cgcgatcggg aacaccttcg cggagggatg
      121 gtccgagccc tgcttacaga aggcggggtt gtcgttgccg cgcaccgagg ccgcgaacca
      181 cacgcgcccc tgcttgtcga acatgccgtt gtggttgttg gcgcgctggc tccagatctt
      241 ctcctcgccc cagtagggcg acggcatggt cggcgtcggc gccgccgagg cgtggaacgg
      301 cggcccgaac gattccggcc cgttcgggtc gagcaccgtc atgcggaacg tcgtcgccgt
      361 gtgcgtcttc gggtcgagga tcggcatgtc gtcgctcgag tactcgggcg acccgtagag
      421 cttgccgtag gcgttgacgg tcgggttgcg ccggtcggac gagatcaggt cgtggatgaa
      481 ggtcttctcc gacccccact cccacgaggt cacgacgacg ttgcgctcga cccccttggg
      541 ccgctcgggc ttcgctttcg gcaggtctcc ttgcgcgatg cggtcggtcc actcgccgaa
      601 gtacttgaac ggcacgccgc cgagctggcc ggcgaggcgg ttcaccatga actcgcccgt
      661 gtggcccgag ccgacgcggc gcatccacgc ctccgcgccc gagttgaact cgccgagctg
      721 cgccgggacg gtgcgggtcg attcctggcc gagctggtgg caaccgacgc aatcgacgtt
      781 gcccatgcgc tggcgccagg tctcccttga gatctccttc gggatctcgg tcgcgccgcc
      841 gaagtccttg gcgggcggca tctgcagcat cgcgtaccag tagatcgccg ggtagtagtg
      901 cgccgccgcg cgctcgttcg gcgccgcgac cgcggcgtgg tcgaggtgct gcccgggctt
      961 cgcgcgcatc ttgggcgagt cgacgaggcc gtagccgcgc acccagacct cgtagttggc
     1021 gaccggcagg tcggggagga cgtagcggcc ctggtcgtcg gtgacgacgc tcttcgcgta
     1081 cttcgtcggc aggtcggtcg tctcggcgat gacccagacg ccggcctcgg ggcccctcgg
     1141 ccccgtcacc accccgccga tgtcgtcctt gtcgatggcg acctgcgcgg ccgcgggccc
     1201 ctgcgcgctc gacggcgacg ccgccgcgat gccgaccgcc gccacgcccg aaaacaggat
     1261 gtcccgaaag cccatgctga cctcccccgc cggtggcgcc gccaccgatc gtctgggatg
     1321 atacatgtcc cgcgccgccg ttgaagccgg cgcgggcggg cctcacggcg acgtgagggt
     1381 tcaaagcgga gggacgaatg aggccgcgac ttgccggacc gtcgacgcgt cgctgcgcgc
     1441 tgctcgcggc gctaatgctc ctgccccagg tcgcccgcgc cgacctcgca tggtggctga
     1501 ccgaacgctt caagcccgcc gccacggcct acgagggcct ctcggcccgc gacatccatc
     1561 cggcgtgggc gcgcttctcg gtcctcacct acgccatgct gccgcacgcc gcccacgccg
     1621 acgtcgcctg gatgcgccgg gagggcttcg ccttcgagaa ggacggcgac ttcaacgccg
     1681 acggccgccc cgaccgcgcc ctcgcgggcg tctaccgcga caaggccggc cgcaccggcc
     1741 gcttcctcct cgtgctcgag cggcaggggg acaagtggcg caaggccttc ctgcacaccg
     1801 agcccggaac gcccggcttc agcatcgtca ccggacctcc gggcgaggtc cactggggca
     1861 cgtgcatgga atgcgacgcc ggcgccgtcc tgcacccccg cggcaggacc tacgccttcg
     1921 agaagggccg aggcgactag gccgcgccag ccgtcatcct cgggcgcgcg aaagcgcgac
     1981 ccgaggacct agtcgagcaa gctcgaatcc ctcaccgcga ggggagggcg acggcgcgaa
     2041 tccctccccg caaggggagg gcgagtcgcg ccttcaggcg cgaccgg
//
LOCUS       DASQWN010000006         2909 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_596491, whole genome shotgun sequence.
ACCESSION   DASQWN010000006 DASQWN010000000
VERSION     DASQWN010000006.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2909)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2909)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2909
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_596491"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..219
                     /locus_tag="VE686_00085"
     CDS             <1..219
                     /locus_tag="VE686_00085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009489276.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CDP-diacylglycerol--serine
                     O-phosphatidyltransferase"
                     /protein_id="HYY82879.1"
                     /translation="PRHWVLPIFVVTVAAFGLFVSFPFEILALATVAYLASIPIGVAR
                     FRQIERSPPAAVVGTDPAVPPDAEAPEP"
     gene            complement(221..562)
                     /locus_tag="VE686_00090"
     CDS             complement(221..562)
                     /locus_tag="VE686_00090"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY82880.1"
                     /translation="MRAMVDAQESAAHATATIAARMPVLFDGVLPLSATALAEWNRAY
                     SEKVAAGFEGAVAAAAEWQGMLIRSAFRLPMPVAFANDLVGIAAKAARPARRRVKANA
                     KRLTKSPRRSA"
     gene            741..1391
                     /locus_tag="VE686_00095"
     CDS             741..1391
                     /locus_tag="VE686_00095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009489279.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0047429 - nucleoside triphosphate
                     diphosphatase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Maf-like protein"
                     /protein_id="HYY82881.1"
                     /translation="MVFGSEKSAPGWRPKLVLASGSPRRLALLQQAGLEPDALLPADI
                     DETPLKSETPRELVRRLARTKAEVARRTARTREELEGAFVVAADTVVSVGRRILPKAE
                     VVEEAAACLRLLSGRTHRVYTAVCVVTPRDAVRERLVESRVRFKRLSREDMEGYLASG
                     QWRGKAGGYAIQGLAGTFVVKLVGSYPNIVGLPLYETISLLDGEGFPVRFTWLNAA"
     gene            1399..>2909
                     /locus_tag="VE686_00100"
     CDS             1399..>2909
                     /locus_tag="VE686_00100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018699256.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AMP-binding protein"
                     /protein_id="HYY82882.1"
                     /translation="MNVALWLERLGRADPGRPAVGRGERVVASYGELAGRAARLAGGL
                     RSGMGLAPGDRVAIVAKNCPEYVEVLYGIWLAGLAAVPVNAKLHGSELAYILEHCGAR
                     ACFVSGGLEAEVGAHAPASLQHLLEIGGPEYGRLLASDAISAVERARDDLAWLFYTSG
                     TTGRPKGAMLSHGNIAAASFAYLTEVDTVAAGDRILHAAPMSHGSGLYIMAHVMRGGV
                     NVVPESGGFEPDEIFRAFAHWRRVSMFAAPTMVKRLVASSGDCDASAIRTIVYGGAPM
                     YVEDARAALDRFGPCLAQIYGQGESPMTITTLSKAQIADRDHPQWLERLGTAGFPYAC
                     VEVAVLDGDDRMLPVGETGEVVCRGATVMPGYWNDPDASARTLKGGWLHTGDVGAFSD
                     EGCLTLKDRSKDLIISGGSNIYPREVEEVLLTHADVREVSVIGRPDPDWGEVVVAYVA
                     GEVPPAELDALCLSRIARFKRPKHYVFLDGLPKNNYGKVLKTELRARLRDRRDG"
BASE COUNT          428 a         1012 c         1005 g          464 t
ORIGIN      
        1 ccgcggcact gggtgctgcc gatctttgtg gtcaccgtcg cggccttcgg cctcttcgtc
       61 agcttcccgt tcgagatcct ggcgctcgcg acggtggctt atttggcatc gatccccatc
      121 ggcgtggcgc gcttccggca gatcgagcgc tcgccccccg ctgcagtcgt cggcacagac
      181 cccgcagtgc cgcccgatgc ggaggccccg gagccctagc ctacgcgctg cgccgggggc
      241 tcttggtcag gcgtttggca ttggctttca cgcggcggcg ggcagggcgg gcggcctttg
      301 cggcaatacc gacaaggtcg ttcgcaaagg cgaccggcat gggaaggcgg aacgccgacc
      361 ggatcagcat tccctgccat tccgccgcgg ccgcgacggc accctcgaaa cccgccgcta
      421 ccttctcgct ataagctcgg ttccactcgg cgagcgcagt cgcactcaga ggcaacactc
      481 cgtcgaacag cacgggcatc cttgccgcga tcgtcgccgt cgcgtgggcg gcactctcct
      541 gcgcatcgac catggcgcgc acgagcgagc tcgaaagctt tctaaccgtc atgatgggag
      601 gcgctccggg aggccggccg cgactcaccc gcggccgttc gtgttcacaa ggtccgacct
      661 atagagtagg ttccgcgccc ttcgcaaagg cccgcgcgtc gcatggcgcc ccggcgttcg
      721 gcaggcagtg gagaggctaa gtggttttcg ggagcgagaa gtctgcgccg ggctggcggc
      781 cgaagctcgt cctcgcctcg ggctcgccgc ggcgcttggc cttgctgcag caggccggcc
      841 ttgagcccga cgcgctgctg ccggccgaca tcgatgaaac acctctcaaa tccgagactc
      901 cgcgcgaact cgtgcgccgg ctcgcgcgca ccaaggccga ggtcgcccgt cggaccgcgc
      961 gcacccgcga ggagctcgag ggcgcgttcg tcgtcgccgc cgacacggtc gtgtcggtcg
     1021 gacgacgcat cctgccgaag gccgaggtcg tcgaggaggc ggcggcctgc ctgcggctcc
     1081 tgtccgggcg cacgcaccgg gtctacaccg ccgtctgcgt ggtcacgccg agggacgccg
     1141 tccgcgagcg cctggtagag agccgggtcc gcttcaagcg cctgtcgcgc gaagacatgg
     1201 agggttacct cgcctccggc cagtggcgcg gaaaggcagg cggctacgcc attcagggtc
     1261 ttgccgggac ctttgtcgtg aagctcgtcg gctcgtatcc gaacatcgtc ggcctaccgc
     1321 tatacgagac catctcgctg ctcgacggag aaggcttccc cgtgcgcttc acctggctca
     1381 acgcggcatg aaggcgccat gaacgtcgcc ctctggctcg agcggctggg ccgggccgat
     1441 cccggaaggc ccgccgtcgg ccgtggcgag cgggtggtgg cgagctacgg cgaacttgcg
     1501 ggccgtgcgg cccggctcgc cggcggcttg cggagcggaa tgggcctggc gcccggcgac
     1561 cgcgtcgcca tcgtggcgaa gaactgcccc gaatacgtcg aggttctcta cggcatctgg
     1621 ctcgccggtc tggcagcggt gccggtcaat gccaagctgc acgggtccga gctcgcctac
     1681 atcctcgagc attgcggtgc ccgcgcgtgc ttcgtctcag gcgggctcga ggccgaggtc
     1741 ggcgcgcacg cgcccgcgag cctccagcac ctgctcgaga tcggaggacc ggagtacggc
     1801 cgcctccttg cgagcgacgc gatctcggcg gtcgagcgtg cccgcgacga cctcgcatgg
     1861 ctgttctaca cgagcggaac caccgggcgg cccaagggcg ccatgctgag ccacggcaac
     1921 atcgcggccg cctccttcgc ctacctgacc gaggtcgaca ccgtcgccgc gggagatcgc
     1981 atcctgcacg ccgccccgat gagccacggt tccggcctgt acatcatggc ccacgtgatg
     2041 cgcggcggcg tgaacgtcgt tccggagtcg ggaggcttcg agccggacga aattttccgc
     2101 gccttcgctc actggcgccg cgtctcgatg ttcgccgccc cgaccatggt gaagcgcctc
     2161 gtcgcgagct ctggagactg cgacgcgagt gccatccgga cgatcgtgta cggcggcgcg
     2221 ccgatgtatg tcgaggacgc gcgcgcggcc ctcgaccgct tcgggccgtg cctcgcgcaa
     2281 atctacggcc agggcgagag tccgatgacg attacgacgc tctcgaaagc gcagatcgcc
     2341 gatcgcgatc atccgcaatg gctcgagcgg ctcggcacgg cgggctttcc ttacgcctgc
     2401 gtcgaggtcg cggtgttgga cggcgacgac cggatgctgc cggtcggcga gacgggcgag
     2461 gtggtgtgcc gcggagccac ggtcatgcct ggctactgga acgatcccga cgcgagcgcc
     2521 cggactctga aaggcggctg gctgcacacc ggcgacgtcg gcgcgtttag cgacgaggga
     2581 tgcctgaccc tgaaggaccg ctccaaggac ctcatcatct cgggcggctc gaacatctat
     2641 ccgcgcgagg tggaagaggt gctcctcaca catgccgacg tgcgcgaggt ctcggtcatc
     2701 ggacgcccgg acccggactg gggcgaggtg gtggtcgcct acgtcgccgg ggaggtgccg
     2761 cccgcggaac tcgacgcgct ctgcttgtcg cgcatcgccc ggttcaagcg gccgaaacac
     2821 tacgtgttcc tcgacggcct gccgaagaac aactacggca aggtgctcaa gaccgagctt
     2881 cgcgcccggc tgcgcgatcg ccgggatgg
//
LOCUS       DASQWN010000007         2784 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1013, whole genome shotgun sequence.
ACCESSION   DASQWN010000007 DASQWN010000000
VERSION     DASQWN010000007.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2784)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2784)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2784
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1013"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..459)
                     /locus_tag="VE686_00105"
     CDS             complement(<1..459)
                     /locus_tag="VE686_00105"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HYY82883.1"
                     /translation="MSSRPPRVLYVCLERIVPGGAAATHVRAICEGLLVQGFEVRLDA
                     EEGKNRSAGLGAQVARYRRILRAAIAGLGWADVVYVRSHFAAFPLAIAARRRGKPMVH
                     EINGPYGDALVTHPRFLHVRTLLRSMQRAQYRWSSALIAVTPDLVTWGRRQ"
     gene            690..1640
                     /locus_tag="VE686_00110"
     CDS             690..1640
                     /locus_tag="VE686_00110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012334577.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lipid A biosynthesis lauroyl acyltransferase"
                     /protein_id="HYY82884.1"
                     /translation="MFHEPAKARSVGSRLAEAGMIGLLRGVFATARTLGPDRASDIGA
                     ALARAGGPLLPQHRIALANVRAAYPEKSDAEVGAIVMGAWDNLGRIGAEYAHLKTLFD
                     FDPDRPGTGRIEVEGIEEFLALRDDGKPGLIFSAHLANWELPAICAARFGLDATAVFR
                     PTNDIAVAQVVHEIRSSTMGGLAASRQGAAFEMSAILERGGHLGMLVDQHFTRGVLVD
                     FLGRPALANPLFAKFARRFECPVHGVRVIRLPEHRFRLELTGPLTLPRNAKGDIDIQA
                     SMQAMTDVVAGWVREHPEQWLWMHRRWRVPMPAQGNVTSA"
     gene            1690..2394
                     /locus_tag="VE686_00115"
     CDS             1690..2394
                     /locus_tag="VE686_00115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012320014.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1223 domain-containing protein"
                     /protein_id="HYY82885.1"
                     /translation="MAAVVVLAASAAVASPLAVVELFTSQGCSSCPPADAALRDLARR
                     TDVIALTMPVDYWDYLGWRDTLAKPAFTARQRAYAATRGDRQVFTPQVVVNGKGACIG
                     SDAAALEQLIQAGRPGPGVGVTLSESAVTVAVNIAGTTNGAARSHIGEVWVVSVAKAR
                     EVAIERGENRGKTITYANVARGITRIGEWRGAPLRLEVPLATAKGDGDGYVVLLQAPD
                     GEKLGPILGAAKSPGL"
     gene            complement(2401..>2784)
                     /locus_tag="VE686_00120"
     CDS             complement(2401..>2784)
                     /locus_tag="VE686_00120"
                     /inference="COORDINATES: protein motif:HMM:NF016424.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TPM domain-containing protein"
                     /protein_id="HYY82886.1"
                     /translation="VLLAVLSWPALRLALVPTFVKRARGREAAAREFVARGLTRTRGR
                     TGVLIYVAQAERYAEVIADKGIADRVDQAVWRATIEELVTALRDGRHADGLVAAVGRV
                     GAILAAHAPVLADDADELPNKVILT"
BASE COUNT          431 a          963 c          980 g          410 t
ORIGIN      
        1 ctgcctgcgg ccccaggtga cgaggtccgg cgtgaccgcg atcagcgcgc tcgaccaacg
       61 gtactgtgcc cgctgcatgc tgcgcaggag cgtgcggacg tgcaggaagc gcggatgcgt
      121 gacaagggca tccccatacg gcccgttgat ctcgtgcacc atgggctttc cacgccgccg
      181 agcggcgatg gcgaggggaa atgccgcgaa atgcgagcga acgtagacga cgtcggccca
      241 gcccagcccg gcgatagcgg cccggaggat gcggcgatag cgcgcgacct gggcaccgag
      301 gccggcgctg cggtttttgc cttcctcagc gtcgagccga acctcgaagc cttgtacaag
      361 caggccctcg cagatcgcgc gcacatgcgt cgccgccgcc ccgcctggga cgatgcgctc
      421 gaggcagacg taaaggacgc gcggcggacg gctcgacaac tcggatttcc cccagccaaa
      481 cctgaggctt gtcgcgcacc agggcaagag cgctgagcgc acgcacggcc ggcaaggccg
      541 ccggtgacca tagatgcgtg gacaactcgc cgcggtcgag ccgcgacgcg ggtcagtcgc
      601 gcgcggcccg cccttgacga aaaacgcggg cgcgctgaaa gacgccgctc agtaggcgcc
      661 gtctcggctg cccgcgagga tcccgcccct tgttccatga gcccgcgaag gcccgcagcg
      721 tcggctcccg cctagccgag gccgggatga tcgggcttct gcgcggcgtc ttcgccactg
      781 cccgcaccct cggaccggac cgggcgagcg acatcggagc cgccctcgcc cgcgccggag
      841 ggccgctcct gccgcagcac cgaatcgcac tcgcgaacgt ccgggccgcc taccccgaga
      901 agagcgacgc cgaggtcggt gccatcgtca tgggggcgtg ggacaacctt ggccgcatcg
      961 gagccgaata cgcgcatctc aagacgctgt tcgacttcga tcccgaccgg ccgggaaccg
     1021 gtcgcatcga ggtcgagggt atcgaggagt tcctggcgct gcgcgacgac gggaagcccg
     1081 gcctgatctt ctcggcccac ctcgccaact gggagctgcc ggcgatctgc gccgcccgct
     1141 tcgggctcga cgcgaccgcg gtgttccggc ccaccaacga catcgccgta gcccaggtgg
     1201 tgcatgaaat ccgcagctcg accatgggtg gccttgcggc gtcgcggcag ggtgcggcct
     1261 tcgagatgag cgccattctc gagcgaggcg ggcatctcgg catgcttgtg gaccagcact
     1321 tcacccgtgg cgtgctcgtc gacttcctgg gccggccggc gctcgcgaac ccgctgttcg
     1381 ccaagttcgc gcgccggttt gagtgtcctg tccacggcgt gagggtgatt cgcctcccgg
     1441 agcatcgctt caggctcgag ctcaccgggc ctctgacgct gccgcgcaac gcgaaagggg
     1501 acatcgacat ccaggcctcg atgcaggcga tgacagacgt tgtcgctgga tgggtgcggg
     1561 agcatccgga gcaatggttg tggatgcacc ggcgctggcg tgttcctatg cccgctcaag
     1621 gcaacgtgac ttccgcgtga gttgtcgttc atggtctact cgcgcatgat cagcgggttg
     1681 agagcggggt tggctgcggt tgtcgtcctg gcggcatcgg ccgcggtcgc gagtcccctc
     1741 gcggtggtcg agctcttcac gagtcagggc tgctcgtcgt gcccccctgc cgacgcggct
     1801 ctgcgcgacc tggcccggcg cacggacgtc atcgcgctca cgatgcccgt cgactactgg
     1861 gactacctcg gctggcgcga cacgctcgca aagccggcgt ttacggcgcg ccagcgagcc
     1921 tatgcggcga cgcggggcga ccgccaggtg ttcacgccgc aggtcgtcgt caacggcaag
     1981 ggagcgtgca tcgggtcgga tgccgccgcg ctcgagcagc tgatccaggc cggccgtcct
     2041 gggccgggcg tcggcgtcac tctgtccgaa agcgccgtaa ccgtcgcggt caacatcgca
     2101 ggcacgacga acggcgccgc gcgcagccat atcggtgagg tctgggtcgt ttcggtcgcc
     2161 aaggcgcgcg aggtcgcgat cgagcgcggc gagaaccgcg gcaagaccat cacgtacgcc
     2221 aacgtagcgc gcggaataac ccgcatcgga gagtggcggg gagcccctct gcggctcgaa
     2281 gtgcccctcg cgacggccaa gggcgacggc gacggctacg tcgtactcct gcaagcgccc
     2341 gacggcgaga agctgggccc gatcctcggc gccgcgaaga gtccggggct gtaacgctcc
     2401 tcaggtcagg atgaccttgt tgggcaattc gtcagcatcg tcggcgagaa ccggcgcgtg
     2461 tgcggcgaga attgcgccga cccgtcccac cgcagccacg aggccgtcgg cgtggcggcc
     2521 gtcccggagc gcggtgacga gttcctcgat ggtcgcgcgc cagacggcct ggtcgacgcg
     2581 gtcggcgatc cctttgtcgg cgatgacctc ggcgtagcgc tcggcttgcg ccacatagat
     2641 gagcaccccc gtgcgcccgc gcgtgcgggt cagtccgcgg gctacgaact cccgcgcggc
     2701 cgcctcgcgg ccgcgggcgc gcttcacgaa cgtcggcacg agcgcgagcc tcaaggccgg
     2761 ccaggacagg acggcgagga gcac
//
LOCUS       DASQWN010000008         2530 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1093399, whole genome shotgun sequence.
ACCESSION   DASQWN010000008 DASQWN010000000
VERSION     DASQWN010000008.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2530)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2530)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2530
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1093399"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(137..937)
                     /locus_tag="VE686_00125"
     CDS             complement(137..937)
                     /locus_tag="VE686_00125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012454902.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HYY82887.1"
                     /translation="MSTAQLVVQHLPYLRRYARALTGSQMAGDAYVAATLETLVNEPE
                     TIGGAGNVKVELFRVFTRIWNSLSVNGRGEQIQRDLPAEVRIGQITPLPRQAFLLSCL
                     EGFSEEEVGAILTVDAETVRELVDEAGRELAADMATDILIIEDEPLIAMDLEALVEGL
                     GHNVIGIARTRTEALKLGGPKRPGLILADIQLADGSSGLDAVNDLLKSFEVPVIFITA
                     YPERFLTGERPEPAFLIAKPFQPANVSAVISQALFFQQSARRRQAATA"
     gene            1147..1329
                     /locus_tag="VE686_00130"
     CDS             1147..1329
                     /locus_tag="VE686_00130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011501789.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016989 - sigma factor antagonist activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NepR family anti-sigma factor"
                     /protein_id="HYY82888.1"
                     /translation="MPQSSTHDETSSEPGLNRQIQSRIGDQLRAMYDDLMQQPVPDRF
                     AELLGRLDQRGPDRKS"
     gene            1326..1871
                     /locus_tag="VE686_00135"
     CDS             1326..1871
                     /locus_tag="VE686_00135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011663182.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HYY82889.1"
                     /translation="MTPDASFRDALLAAVPSLRAFAISLSGNVDRADDLVQDTLVRAI
                     ANAHRFEPGTNLNAWLFTILRNLFHSEYRKRRREVEDPDGVYAEQLTSQPEQGARLDF
                     EDFRSALATLPSEQREALLLVGASGFSYEETAAICGCAVGTVKSRVNRARSRLSGLLH
                     LDAAEDIGPDRITRAALQAAG"
     gene            complement(1937..2113)
                     /locus_tag="VE686_00140"
     CDS             complement(1937..2113)
                     /locus_tag="VE686_00140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012562427.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1328 domain-containing protein"
                     /protein_id="HYY82890.1"
                     /translation="MLGWAVTFLIVALVAAVFGFGGIAGTAMEIAKLIFFVAIVLFAI
                     SAVIGLLRGRSSTL"
     gene            2333..>2530
                     /locus_tag="VE686_00145"
     CDS             2333..>2530
                     /locus_tag="VE686_00145"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY82891.1"
                     /translation="MTRIVALRASMIFVALMLLTGAMSLASHATVLTALLSISASVAA
                     LLFVLALAPAQPAPVPVRVRDR"
BASE COUNT          428 a          867 c          804 g          431 t
ORIGIN      
        1 cattcccctt gtgcatcggc cggttccttt agacgggtca gattctgacc cgtctttttt
       61 tcgtgccgag cgcctgaacg aaaaacgccc ggctcgtcgc cgggcgtctt ccgtgccggg
      121 aatgggtccg gaggccttaa gccgtcgcgg cctggcgccg gcgcgcgctc tgctggaaga
      181 acagcgcctg gctgatcacc gccgagacgt tcgcgggctg gaacggcttg gcgatcagga
      241 acgccggctc cggccgctcg ccggtgagga agcgctccgg atacgcggtg atgaagatca
      301 ccggcacctc gaacgacttc aggagatcgt tgacggcgtc gagacccgag ctgccgtcgg
      361 ccagctggat gtcggcgagg atgagaccgg gccgcttcgg gccgccgagc ttcagcgcct
      421 ccgtgcgcgt gcgcgcgatg ccgatgacgt tgtggccgag gccctcgacg agcgcctcga
      481 gatccatcgc gatcagcggc tcgtcctcga tgatgaggat gtccgtcgcc atgtcggccg
      541 caagctcgcg gcccgcctcg tcgaccagct cgcgcacggt ctcggcgtcg acggtgagga
      601 tcgccccgac ctcctcctct gagaaaccct cgaggcagga caggaggaag gcctggcgcg
      661 gcagcggcgt gatctgcccg atgcgcacct cggccggcag gtcgcgctgg atctgctcgc
      721 cgcgtccgtt gaccgagagc gagttccaga tgcgcgtgaa gacgcgaaac agctcgacct
      781 tgacgttgcc ggccccgccg atcgtctcgg gctcgttgac gagggtctcc agagtggccg
      841 ccacatacgc atcgccagcc atctggctcc cggtgagcgc ccgggcataa cgcctgagat
      901 acggcaggtg ctggacaacc aactgggctg tggacattcg cttcccctta ttgcttagct
      961 tagctagaac agtcggacaa tccaactcgg ttcgggtgaa aaggttccat ttcatggaac
     1021 cgcggtgggg gctcggcgtt gtcgctgcaa tgtgcacaga caccgcccgc cggcaatccg
     1081 gacaagggac ggtgagggga ccacaacaca atgacgcgca gcaagggcaa gaggcttgcg
     1141 acggtgatgc cgcaatcgtc tacgcacgac gaaacgtcct ccgaacccgg gctcaaccgg
     1201 cagatccaaa gccggatcgg cgaccagctg cgggccatgt acgacgatct catgcagcag
     1261 cccgtccccg accggttcgc tgagctcctt ggccgactgg atcagcgcgg gccagaccgc
     1321 aagtcatgac ccccgatgcc tcgtttcgcg atgcgctgct tgcagcggtc ccgagcctgc
     1381 gcgctttcgc gatctcgctc tccgggaacg tcgaccgtgc cgacgatctg gtgcaggaca
     1441 ctctcgttcg cgccatcgcc aacgcgcatc gcttcgagcc gggcaccaac ctgaacgcct
     1501 ggctgttcac catcctgcgc aacctgttcc actccgagta ccgcaagcgc cggcgcgagg
     1561 tggaagaccc cgacggggtc tacgccgagc agctcacgag ccagcccgag cagggcgccc
     1621 gcctcgactt cgaggatttc cgctctgcgc tcgcgacgct tccgagcgag cagcgcgagg
     1681 cgctgctcct cgtcggcgcg tcggggttct cgtatgagga gacggcggcg atttgcggct
     1741 gtgccgtcgg gacggtgaaa agccgcgtga accgcgcgcg ctcccgactg tcgggcctgc
     1801 tgcatctcga tgcggcggag gatatcggcc ctgaccgcat cacccgcgcc gccctacagg
     1861 cagccggctg aggcgacgca caaagaaacg ccgcctttcg gggcggcgtt tttctgtctt
     1921 gcttgacggc gtcgccctag agcgtcgagc tgcggccgcg caacagcccg atgacagccg
     1981 agatcgcgaa cagcacgatc gcgacgaaga agatcagctt tgcgatttcc atggcggtcc
     2041 cggcgatgcc gccgaagccg aacacggccg ccacaagggc gacgattagg aaagtgactg
     2101 cccatccgag catagctcta cctcccgaag gtcctatccg gcgacatgcc gagcacagct
     2161 gatcaacgcc gcttcaaagg ttagagttcc gtcgcacagg aacgactacc ttgcctgccc
     2221 gtgcagacgc gacctcgatt ccttggtcga tgctcggccg caacttgctg ccgccgctcc
     2281 ggaacggaag atgtcgcgca gcgttggacc aagacttttc ggaggtttgc ccatgacccg
     2341 gatcgtcgcc ctgcgagcca gcatgatctt cgtcgcgctc atgctcctga ccggagccat
     2401 gagcctggct tcgcacgcca cggtcctgac cgcgctcctc tcgatcagcg cttcggtcgc
     2461 ggccctcctt ttcgtgctcg cgctcgcccc ggcgcaaccc gccccggtac cggtccgcgt
     2521 tcgcgaccgg
//
LOCUS       DASQWN010000009         2791 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_597407, whole genome shotgun sequence.
ACCESSION   DASQWN010000009 DASQWN010000000
VERSION     DASQWN010000009.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2791)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2791)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2791
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_597407"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            31..729
                     /locus_tag="VE686_00150"
     CDS             31..729
                     /locus_tag="VE686_00150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003606011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HYY82892.1"
                     /translation="MPTIALVDDDRNILTSVSIALEAEGYRIQTYTDGASALDGLKQT
                     PPDLAILDIKMPRMDGMELLRRLRQKSDLPVIFLTSKDEEIDELFGLKMGADDFIRKP
                     FSQRLLVERVKAVLRRFAPKDQTAPKEDSAKALERGQLVMDPERHTCTWKGEPVTLTV
                     TEFLILQALAQRPGVVKSRNALMDAAYDDQVYVDDRTIDSHIKRLRKKFKQADQSFDM
                     IETLYGVGYRFKEG"
     gene            755..2524
                     /locus_tag="VE686_00155"
     CDS             755..2524
                     /locus_tag="VE686_00155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009490428.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sensor histidine kinase"
                     /protein_id="HYY82893.1"
                     /translation="MKAEPLHADIAEEPAPPRRRALARLRGLGHALSQRASSSLTRRI
                     VVLNLAGLVALLVGFLYLNQFRQGLIEARVQSLLTQGEIIAGAIAASASVETDTITID
                     PDRLLQMHAGETSGLGDEAASPLEFSINPERVAPLLRRLVTPTKTRARIYDREGGLLL
                     DSRTLYSRGDVLRLELPPLKKEKPTVVEQAWNAVRGVFRRDRPVLDEIGPTNGKTLPE
                     VQQALGGTRASVVRVNPRGETIVSVAVPVQRFRATRGVLLMSTQGGDIDAIIASERFA
                     LLQVFLVAALVMVVLSLLLAGAIAGPVRRLAEAAERVRRGIKSRQEIPDFTSRSDEIG
                     HLSGALRDMTRALYNRIDAIESFAADVAHEIKNPLTSLRSAVETMPLAKTEDSRKRLL
                     SVIQHDVRRLDRLISDISDASRLDAELARSEGEPVDLSKLLQAVVSVANDRRHEHDPI
                     VELTVEPHRSGRDAFVVLGHDSRLGQVINNLLDNARSFSPPDATVRVRLRRVRGEIEI
                     SVEDDGPGIPPHALERIFERFYTDRPHQGFGQNSGLGLSISKQIIEAHSGRVWAENRH
                     GPADADGKPTVAGARFVVRLPAP"
     gene            2524..>2791
                     /locus_tag="VE686_00160"
     CDS             2524..>2791
                     /locus_tag="VE686_00160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015669920.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HPr kinase/phosphatase C-terminal
                     domain-containing protein"
                     /protein_id="HYY82894.1"
                     /translation="MTQGASVHASAVLVGDRAVLIRGPSGAGKSRLAFDLILAGRAGQ
                     LPPAILVGDDRVHLDTLAGELWVRPAAELAGLIEVRGLGVRRCDC"
BASE COUNT          435 a         1012 c          931 g          413 t
ORIGIN      
        1 cgcggccccg cgtagaggga gacctgtccc atgcctacca tcgcccttgt cgacgacgac
       61 cgcaacatcc tcacgtcggt ctcgattgcc ctggaggcag aaggctaccg cattcagacc
      121 tacacggacg gggcctcggc cctcgacggc ctgaagcaga cgccgcccga cctcgcgatc
      181 ctggacatca agatgccgcg catggacggg atggagctgc tgcgccgcct gcgccagaaa
      241 tccgacctgc cggtgatctt cctcacctcg aaggacgagg agatcgacga gttgttcggc
      301 ctcaagatgg gcgcggacga cttcatccga aaaccgttct cgcagcggct cctggtggag
      361 cgggtcaagg cggtgctgcg ccgcttcgcg ccgaaggacc agaccgcgcc caaggaggat
      421 tcggcgaagg cgctcgagcg cgggcagctc gtcatggatc cggagcgcca cacctgcacc
      481 tggaaaggcg agccggtgac gctcacggtc accgagttcc tgatcctgca ggcgctggcg
      541 cagcgccccg gggtcgtgaa gagccgcaac gccctcatgg atgccgccta cgacgaccag
      601 gtctacgtcg acgaccgcac catcgacagc cacatcaagc gcctgcgcaa gaagttcaag
      661 caggccgacc aaagcttcga catgatcgag accctgtacg gggtcggcta ccgcttcaag
      721 gaaggctgag cgcgcgtcgc cgcgcgccct cgcgatgaaa gccgagcctc tccacgccga
      781 catcgccgag gagcccgcgc cgccgcggcg ccgcgccctc gcccggctac ggggactggg
      841 gcacgcgctg tcgcagcgag cgtcgtcgag cctgacgcgg cgcatcgttg tcctcaacct
      901 tgccgggctc gtcgcgctgc ttgtcgggtt cctctacctc aaccagttcc ggcaggggct
      961 gatcgaggcg cgcgtccaga gcctgctcac gcagggtgag atcatcgccg gcgccatcgc
     1021 ggcctcggcg tccgtcgaga ccgacaccat caccatcgat ccggaccggc tgctgcagat
     1081 gcacgccggg gagacctcgg gccttgggga cgaggccgcc tcgccgctcg agttctccat
     1141 caatccggag cgggtggcgc cgctgcttcg gcgcctggtc accccgacga agacccgcgc
     1201 ccgcatctac gaccgcgaag gcgggcttct gctcgactcg cgcacgctct actcgcgcgg
     1261 ggacgtcctg cgcctcgagc tgccgccgct gaagaaagag aagccgaccg tcgtcgagca
     1321 ggcgtggaac gccgtgcggg gggtgttccg ccgggaccgc ccggtcctcg acgagatcgg
     1381 ccccaccaac ggcaagaccc tgcccgaagt gcagcaggcc ctaggcggaa cccgtgccag
     1441 cgtcgtgcgg gtgaacccgc gcggcgagac catcgtctcg gtcgcggtgc cggtgcagcg
     1501 cttccgcgcc acccgcgggg tcctgctcat gtcgacgcag ggcggcgaca tcgacgccat
     1561 catcgcctcc gagcggttcg ccctgctgca ggtgttcctg gtggcggcct tggtgatggt
     1621 cgtcctctcg ctccttctcg ccggcgccat cgcggggccg gtccggcggc tcgcggaggc
     1681 ggccgagcgg gtccggaggg gcatcaagtc gcggcaggag atcccggact tcacgagccg
     1741 ctccgacgag atcgggcacc tctcgggcgc cctgcgcgac atgacccgcg ccctctacaa
     1801 ccggatcgat gccatcgaga gcttcgccgc cgacgtggcg cacgagatca agaacccgct
     1861 gacctcgctg cgcagcgccg tcgagaccat gccgctcgcc aagaccgagg actcgcgcaa
     1921 gcgcctgctg tcggtgatcc agcacgacgt gcgccgcctc gaccggctga tcagcgacat
     1981 ctcggacgcg tcccgtctcg atgccgagct cgcccgcagc gagggcgagc cggtggatct
     2041 ctccaagctc cttcaggccg tcgtctcggt cgcgaacgac cgccgccacg agcacgatcc
     2101 catcgtcgag ctcacggtcg agccgcaccg ctcgggccgc gacgcgttcg tggtgctcgg
     2161 gcacgacagc cggctggggc aggtgatcaa caaccttctc gacaacgcgc gctcgttctc
     2221 gccgccggat gctacggtcc gagtgcgcct gcgccgcgtg cgcggcgaga tcgagatcag
     2281 cgtcgaggac gacggtcccg gcatcccgcc ccatgccctc gagcgcatct tcgagcgctt
     2341 ctacaccgac cggccgcatc agggctttgg ccagaactcc ggcctcggcc tgtcgatctc
     2401 caagcagatc atcgaagcgc atagcgggcg ggtctgggcg gaaaatcgcc acggcccggc
     2461 cgatgccgac ggcaagccga cggtggccgg cgcacgcttc gtggtccggc tgccagcgcc
     2521 atgatgacgc agggcgcgag cgtgcacgcc tccgccgtgc tggtgggcga ccgcgccgtg
     2581 ctgatccggg ggccatcggg tgccggcaag tcgcgcctgg ccttcgacct gattctcgcc
     2641 ggacgcgccg gacagcttcc gccggccatt ttggtcggcg acgaccgtgt ccatctcgac
     2701 acactggccg gagaattgtg ggtccggccg gccgccgaat tggccggcct gatcgaggtc
     2761 cgcggccttg gcgtccgccg ctgtgattgc g
//
LOCUS       DASQWN010000010         2478 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1093529, whole genome shotgun sequence.
ACCESSION   DASQWN010000010 DASQWN010000000
VERSION     DASQWN010000010.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2478)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2478)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2478
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1093529"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..579)
                     /locus_tag="VE686_00165"
     CDS             complement(<1..579)
                     /locus_tag="VE686_00165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020012653.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-binding domain-containing protein"
                     /protein_id="HYY82895.1"
                     /translation="MTIGIIGAGSIGLAVAKTLARAGIGATIANSRGPESLKDAVEHL
                     GPAIKAGSREQAASADMVFIAVNWSRLRAAFDGLPAWGGRIVIDANNPVEAPLFKPVD
                     LQGRVSSEVVADLVRGARVVKAFNHLRADVLASDPTADGGRRVLFYSGDDDGAKAEVA
                     ALIDRIGFAAIDLGPLAIGGALAQFPGGPLPNQ"
     gene            complement(601..1041)
                     /locus_tag="VE686_00170"
     CDS             complement(601..1041)
                     /locus_tag="VE686_00170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003518727.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ester cyclase"
                     /protein_id="HYY82896.1"
                     /translation="MTKIDTSEAAKAVVRRNTEEVQGGGNFAVFEELFADDFLDHTPQ
                     PGRTPDKAGARELYKVLRKAFPDFHAEIHWQLADGDRVTTYKTYHGTHDGEFFGMAPT
                     GRKVAFETVDVMRVRDGKIAEHWGVANLFSLMQQLGGLSGAPKA"
     gene            complement(1089..1736)
                     /locus_tag="VE686_00175"
     CDS             complement(1089..1736)
                     /locus_tag="VE686_00175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006202545.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hydrolase"
                     /protein_id="HYY82897.1"
                     /translation="MPAAPLKNGLDALLTPDESDHQPFQFANLHSHEPMMIVNNVIGL
                     AKAAKVFGVPTILTTVVEDRGGKLIKGLQDVFPDQKPIDRTFINTWEDARVVDAVKKT
                     GRRKLVMAALWTEICLAMPAIQAAGEGYEVYAVTDASGGVSAEAHDMGIRRMTMAGVV
                     PMNWLAVASEWQRDWARQGTAAALGESVLPHTGATGTSFAWELQLLGQASVAAAA"
     gene            1841..>2478
                     /locus_tag="VE686_00180"
     CDS             1841..>2478
                     /locus_tag="VE686_00180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018115727.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0001216 - DNA-binding transcription
                     activator activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HYY82898.1"
                     /translation="METLANLEAFVRSAEAASFSAAARRLALTPAAVSRNVAMLERNL
                     GVRLFQRSTRKLTLTDAGERFLAAIKDDLERLQQAIVDVAPHRDEPGGVLKVSMGLNF
                     GADYILPLLPAFLARYPGIRPDWQFTTRQVDLIGEGYDVAIGGGIELTPAIVSRTLAP
                     LHLIAVASPAYLEGRIPPANPAGLMDFDGIAWRSSRTGRIRERLMRNAAGTEV"
BASE COUNT          360 a          844 c          836 g          438 t
ORIGIN      
        1 ctggttcggc aagggtccgc ccgggaactg ggcgagcgct ccgccgatcg ccaagggtcc
       61 gaggtcgatg gctgcgaagc cgatgcggtc gatcagcgct gcgacctcgg ccttcgcgcc
      121 gtcgtcgtcg cccgagtaga acagaacgcg acgaccgccg tccgccgtcg ggtcgctcgc
      181 cagcacgtcg gcccgaaggt ggttgaatgc cttcacgacg cgggcgccac gcaccagatc
      241 ggcgacgacc tcgctcgaga cccgtccctg caggtcgacg ggcttgaaca ggggcgcctc
      301 gacgggattg ttcgcgtcga tcacgatgcg tccgccccag gccggcagcc cgtcgaaggc
      361 ggcccgcagc ctcgaccagt tcacggcgat gaagaccatg tcggcgcttg ccgcctgttc
      421 gcggctgcca gccttgatgg cagggccgag gtgctcgacg gcgtccttga gcgactccgg
      481 cccgcggctg ttggcgatgg tggcgccgat gccggcccgc gcgagcgtct tcgcgacggc
      541 gaggccgatg cttcctgctc cgatgatccc gatggtcatg ggtctggccc tttcgcggcc
      601 tcaggctttc ggtgcaccgg ataggccgcc gagttgctgc atgagcgaga agagattggc
      661 gacgccccag tgctcggcga tcttgccgtc ccgcacgcgc atgacgtcga cggtctcgaa
      721 cgcgaccttg cgacctgtcg gcgccatgcc gaagaactcg ccgtcgtggg tgccgtgata
      781 ggtcttgtag gtggtgacgc ggtcgccgtc ggcgagctgc caatggatct cggcgtggaa
      841 gtccggaaac gccttgcgga ggaccttgta gagctcgcgc gcacccgcct tgtcgggcgt
      901 gcgcccgggc tgcggcgtgt ggtcgaggaa atcgtcggcg aagagttctt cgaacacggc
      961 gaaattcccg ccgccctgca cttcctcggt gttgcgtcgc accaccgcct tcgcggcttc
     1021 gctcgtgtcg atcttggtca tgacctgcct cgatggtgaa agggtgtccg catgcctcgc
     1081 aggcggcttc aggcagcagc ggcaacgctc gcctggccga gaagctggag ctcccacgcg
     1141 aacgacgtgc cggtcgcgcc ggtgtgcggg agaacggatt cgccgagcgc ggccgccgtc
     1201 ccctggcgcg cccagtcgcg ctgccattcg ctcgcgaccg cgagccagtt catcgggacg
     1261 acgccggcca tcgtcatgcg acggatcccc atgtcgtgcg cctcggcgct gacgcctccc
     1321 gacgcatccg tcacggcgta gacctcatag ccttcgcccg ccgcctggat cgccggcatg
     1381 gcgaggcaga tctccgtcca gagcgccgcc atgaccagct tcctgcggcc cgtcttcttc
     1441 acggcgtcga cgacccgggc gtcctcccac gtgttgatga aggtccggtc gatcggcttc
     1501 tggtcgggaa agacgtcctg caagcccttg atgagcttgc ctccgcgatc ctcgacgacg
     1561 gtggtcagga tcgtcggcac gccgaagacc ttggcggcct tcgcgaggcc gatgacgttg
     1621 ttcacgatca tcatcggctc gtggctgtgc aggttggcga actggaacgg ctggtggtcg
     1681 gactcatcgg gcgtgagaag cgcgtcgagg ccgttcttga ggggggctgc gggcatgtcc
     1741 gtcgttcctt gcttgtgccc tgtggaatgt accgacgaac tcgcctagga ttagtcggga
     1801 aagggtggaa gcacttccaa gcaccccttg aaggtgaacc ctggagaccc tcgcgaacct
     1861 ggaagctttc gtccgcagcg ccgaggcggc gagcttttcg gccgcggcgc ggcgccttgc
     1921 gctcaccccg gcggccgtga gccgcaacgt ggcgatgctg gagcgcaatc ttggcgtccg
     1981 gctgttccag cgcagcacgc gcaagctcac gctcaccgat gcaggcgagc gattccttgc
     2041 cgccatcaag gacgacctcg agcggcttca gcaggcgatc gtcgacgtcg ctccccatcg
     2101 ggacgaaccc gggggcgtgc tcaaggtcag catgggccta aacttcgggg ccgactacat
     2161 cctgccgctg ctgcctgcgt tcctggcgcg ctacccgggc atccgtcccg actggcagtt
     2221 cacgacgcgt caggtcgatc tcatcggcga gggctacgac gtggcgatcg gcggcggcat
     2281 cgagctgacg cccgccatcg tctcgcgcac gcttgcgccg ctgcatctca tcgccgttgc
     2341 ctctccggcc tacctcgaag gccgcatccc gcccgcaaat ccggcgggtc tcatggactt
     2401 cgacgggatt gcctggcgct cgtcgcgcac cggccgcatt cgcgagcggc tgatgcgcaa
     2461 cgctgccggg actgaagt
//
LOCUS       DASQWN010000011         9011 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_100262, whole genome shotgun sequence.
ACCESSION   DASQWN010000011 DASQWN010000000
VERSION     DASQWN010000011.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 9011)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9011)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9011
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_100262"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            181..1305
                     /locus_tag="VE686_00185"
     CDS             181..1305
                     /locus_tag="VE686_00185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011471596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trypsin-like peptidase domain-containing
                     protein"
                     /protein_id="HYY82899.1"
                     /translation="MAQDRFFRIALVVALVLLAGFVAEPYVARFLYAVETPRTVTPRG
                     DLSAAERSTVDLFERVSPSVLHVFAQPTTRSMMVDEYGDGQGRGPGGLQTGSGFVWDD
                     AGHIVTNNHVVQNAGPFAVKLATGETVSATLVGAAPNYDIAVLRLGTARRPPPRLAIG
                     SSSDLKVGQAAFAVGNPFGLDQTLTTGVISALQRRLPTSEGREIADVIQTDAAINPGN
                     SGGPLLDSAGRLIGVNTAIFSPSGASAGIGFAIPVDVVNRVVPQLIRNGRMPNPGIGI
                     MAAPEQAVARLGIEGIVILRTLPGSPAARAGLRGVDPRTGTIGDIITAVNGRPIRRLS
                     DLTAALEQTGVGKPVELTVERDGRPYTTTVEVADVARPPG"
     gene            1336..1647
                     /locus_tag="VE686_00190"
     CDS             1336..1647
                     /locus_tag="VE686_00190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018042335.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhodanese-like domain-containing protein"
                     /protein_id="HYY82900.1"
                     /translation="MAIVDLDREEVARGLQDGSIMLVDVREPHEFAAGHIPGSISLPL
                     STFDAADLPVAEGRRIVFSCAAGVRSVHAIHIAQAAGRDVREHYRGGFKDWLMWGGDV
                     A"
     gene            complement(1669..2844)
                     /locus_tag="VE686_00195"
     CDS             complement(1669..2844)
                     /locus_tag="VE686_00195"
                     /inference="COORDINATES: protein motif:HMM:NF013736.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine kinase dimerization/phosphoacceptor
                     domain -containing protein"
                     /protein_id="HYY82901.1"
                     /translation="MTKSRTAASLEERVVRMHDYQHALAALSRAASESLGAERLMHYV
                     TAQVSRVTHIKRVKVMQYRPDRGDLLVVAGVGWKQGVVGVVTLGIDSASPPGRTVQTA
                     GPVIIEDLPNDPEFRLSGVLRDHGIVSVLNVPVMVDSRTWGVLEVDAETPRTFGDDDV
                     TFLTTAANILGVAFRRYDTERKSVEQTAEHLEARNRAEVLMRELQHRMKNNLQTIVSF
                     LSLQRRRAETAESREKLATVMDRVHAIALAHDQLALRGDARDVDFGDYLRALCANIDP
                     HREGVAIEVDVKATFLLSLDRAVPAGLIVNELVTNSLKYAFDDDGGVIRVSFTTDPDR
                     GEANLIVEDNGRGIGEPREGGLGLTLVEAFTRQLGGKTGREEADKGTRTKVCFPLPM"
     gene            complement(2904..3455)
                     /locus_tag="VE686_00200"
     CDS             complement(2904..3455)
                     /locus_tag="VE686_00200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009494035.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HYY82902.1"
                     /translation="MPSTQLEPQVRSALLAAIPHLRAFAISLTGDIDRADDLVQDAVV
                     RGLSHLDRFEPGTNLQAWLFTILRNLFYSEHRRRRREVEDPEGTAAEKLSVAPAQGAH
                     LDFQDLKMALSRLSPEQREAILLVGAEGLTYEQAAEVCGVVVGTIKSRVNRARARLTE
                     LMALAPDDEITVDRMVQATVRAA"
     gene            3957..4184
                     /locus_tag="VE686_00205"
     CDS             3957..4184
                     /locus_tag="VE686_00205"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY82903.1"
                     /translation="MVDDITRASDALRLAAADSNFRPLIPALSTCPTCGTVIMVAAPV
                     ITTCLDCGVVSVVLDRTSVAASAAHDLSVAA"
     gene            4225..5325
                     /locus_tag="VE686_00210"
     CDS             4225..5325
                     /locus_tag="VE686_00210"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY82904.1"
                     /translation="MAQRASWQRHRAARTALALAAAAAAFVMAAFAALDASSQPARRG
                     PPATLQETGLYSDFDSLEVDPQHLPFAPQYPLWTDGAAKRRWISLPPGTAIDASDPEA
                     WAFPIGTRLWKEFSFDGRRIETRYLERQADGQWLYAAYAWSADGRAAPLAPPRGKYGA
                     YTFAGGRSHTIPGVSDCHVCHRGGRSEVLGFSALQLSPDRDPLAVHGEPAPGPGVDLA
                     FLVEKGLLVGYPTAVPQRSPRITAGSAAERAALGYLHGNCGHCHNDKGSLQNLGLFLR
                     HIEGSKVEAAVASTIGQPVRKPAPGQSADAVSRVEAGHPERSGLMQRVSSRTAALQMP
                     PLGTELVDDEAVALLQRWISERAQVASNTVEK"
     gene            5359..5880
                     /locus_tag="VE686_00215"
     CDS             5359..5880
                     /locus_tag="VE686_00215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007065578.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diheme cytochrome c-553"
                     /protein_id="HYY82905.1"
                     /translation="MAIALFVPTMALAQGGPASAKIKRGEYLVTIGSCHDCHTPAVMG
                     PNGPEPDMSRALSGHPQDIRIATPARLPEPWIAAFSPTLTAWSGPWGVSFSANLTPDS
                     ETGVLRDFTEQQFMQALRTGRHQGQGRPILPPMPWRFIGEMTDDDLSAVYAYLRQIPA
                     VKNKVPDPLPPAK"
     gene            complement(5971..6891)
                     /locus_tag="VE686_00220"
     CDS             complement(5971..6891)
                     /locus_tag="VE686_00220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019403367.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR substrate-binding domain-containing
                     protein"
                     /protein_id="HYY82906.1"
                     /translation="MPRINLRQVEAFRAVMLSGSVTGAAGLMGVTQPAVSRLIRDLQL
                     VLKVALFERRGTGLVPTAAATALYTEVERSFTGLDRIAAAAEEIRTRRTGMLRVAALP
                     ALSNGFMPRFAGRFLSDRPNLDLTLFGVISPLVVDWVLNLQCDLGFAEVPIAHAGLPT
                     VPMPTLPRVAVLPQGHRLCAKATLRPRDFEGETFISLTSASPGRHFTDRVFAEAGVSR
                     VLRVETSLSEIMCGLVSSGFGVAVCDPFTAAEFAPRGVVSRPFLPRIDFEFAAVFPPQ
                     RSPSPIAEEFVELFAGHVRAMAQDLGVAPG"
     gene            7018..8058
                     /locus_tag="VE686_00225"
     CDS             7018..8058
                     /locus_tag="VE686_00225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007614359.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HYY82907.1"
                     /translation="MKISSSLLAAAGLVALNVAATPASAQQKTFYVAGYGGSFEQTMR
                     TEVIPDFEKKHGVKVEYVAGNSTDTLAKLQAQKGNQQIDVAIVDDGPMYQAIQLGFCG
                     KLQGLPEADLYEAARFKDDRAVAIGLVGTGLMYNTKVFAEKGWPAPTSWDDLKDPKFK
                     KLIVIPPINNTYGLYTLLMFAKMNGGGEKNIEPGFKIMKEQVNPNVLAYEPSPGKMTE
                     LFQSGQAVLAVWGTGRVQSFANTGFPVDFVYPKEGAVTLLASACPIEKANASPMASEF
                     IKAMLEPKMQLILLKDYGYGPVNKTVQVPAELGKMAPVGERAAKLYNPDWPTINAVRE
                     DWTKRWNREVER"
     gene            8142..>9011
                     /locus_tag="VE686_00230"
     CDS             8142..>9011
                     /locus_tag="VE686_00230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014492353.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HYY82908.1"
                     /translation="MSFLELDSVSKRFGDHLAVEDLRLSVAKGEFISLLGPSGCGKTT
                     TLQMIAGFVDLTTGAIRLNGRDLASVKPAKRGLGIVFQSYALFPHMTAAENVAFGLEM
                     RGVPRGERETRVRDVLAMVGLAGYEGRHPRRMSGGQQQRVALARALVIKPDVLLLDEP
                     LSNLDAKLREGMQIELRQIQRNLGTTTVLVTHDQTEAMALSDRIVVMNAGRVEQIGTP
                     QETYERPASAFVSQFLGKTNEFRAYVEAGSGAPRLVAGSCAWPAPAGATGTVTISVRP
                     EKVGFAGDGASGLA"
BASE COUNT         1457 a         3035 c         3084 g         1435 t
ORIGIN      
        1 ccggcattgc acgtgggagc gtatcggcga ccgttgcgct ctcaccttgc gggtgccgcg
       61 cccgcaaggc ctagcgtccg cggtgccaag gagataccca gcgcggcaca gatccggagc
      121 cttcgcgtta cccagctacc atgcgcgcgc agacgaccgc ggctgaccgc cggaggagag
      181 atggcgcagg accggttctt ccgtatcgcg ctcgttgtag cgctcgtgct tcttgctggg
      241 ttcgtcgcag aaccttacgt ggcgcgcttc ctctatgcgg tcgagacgcc gcggacggtc
      301 acgccacggg gcgatctgtc ggccgcggag cgctcgacgg tcgacctgtt cgagcgcgtc
      361 tcgccttcgg tgctgcacgt cttcgcacag ccgacgaccc gcagcatgat ggtcgacgaa
      421 tacggcgatg ggcaggggcg aggtcccggg ggcctgcaga cggggtccgg attcgtttgg
      481 gacgacgccg gccacatcgt caccaacaat catgtggtcc agaacgccgg ccccttcgcc
      541 gtgaagctcg cgaccggaga gacggtctcg gcgacgctcg tcggggctgc gccgaattac
      601 gacatcgccg tgctgcggct cgggacggcg cggcggccgc cgccgcgtct cgcgatcggg
      661 tcatccagcg acctcaaggt tgggcaggcg gcgttcgccg tcggcaaccc gttcggcctc
      721 gaccaaaccc tcaccacggg cgtcatcagc gccctccagc gccggctccc gaccagcgag
      781 ggccgcgaga tcgcggacgt catccagacc gacgcggcca tcaaccccgg caactccggc
      841 ggcccgctgc tcgattcggc cgggcgcctc attggcgtga acaccgcgat cttctcgccc
      901 tccggcgcct cggccggaat cggcttcgcg atccccgtcg acgtggtgaa ccgcgtggtg
      961 ccgcagctga tccgcaacgg ccgtatgccg aatcccggca tcggcatcat ggcggccccc
     1021 gagcaggccg tggcgcggct cggcatcgag ggcatcgtca tcctgcgcac actgcccggc
     1081 tcacccgccg cccgcgccgg cttgcgcggc gtcgatccgc gcaccggcac gatcggcgac
     1141 atcatcaccg cggtgaacgg acgcccgatc cgccgcctct ccgacctaac cgccgccctc
     1201 gagcagaccg gagtggggaa gcctgtcgaa ctcaccgtcg agcgcgacgg gaggccctac
     1261 acgacgacgg tcgaggtggc cgacgttgcc cggccaccgg ggtgaacgcg gagcgacagg
     1321 atgattcaac ccgaaatcgc catcgtagat ctcgaccggg aggaggtcgc gcgcgggctg
     1381 caggacggct cgatcatgct cgttgacgtg cgtgagccgc atgaattcgc ggcgggccat
     1441 atccccgggt cgatatcctt gcctctctcg acgttcgacg cggccgacct gccggtcgcg
     1501 gagggcaggc gcatcgtgtt ctcctgcgcg gccggggttc gctccgtgca cgccatccac
     1561 atcgcccaag cggctggccg cgacgtgcgc gagcactacc gcggcggctt caaggactgg
     1621 ctcatgtggg gtggcgacgt cgcgtagcgc aggtcggcgt cgtaggctct acattggaag
     1681 cgggaagcag accttcgtgc gcgtgccctt gtcggcctct tcgcggcccg tcttgccccc
     1741 gagctggcgc gtaaatgcct cgaccagggt aaggccgagc ccgccctcgc gcggctcgcc
     1801 gatgccgcgg ccgttgtcct cgacgatgag gttcgcctcg ccgcgatcgg gatccgtggt
     1861 gaaggacacg cggatgacgc cgccgtcatc gtcgaaggcg tacttgaggc tgttcgtcac
     1921 gagctcgttg acgatgaggc cggccgggac ggcgcggtca agggacagca ggaatgtggc
     1981 cttcacgtcg acctcgatgg ccacaccctc acggtgcgga tcgatgttgg cacacaaggc
     2041 gcgcaaatag tcgccgaagt cgacgtcgcg agcatcgccg cgcaaggcaa gctggtcatg
     2101 ggcgagcgcg atggcgtgga cgcggtccat gacagtcgcg agcttctcgc ggctctcggc
     2161 cgtttcggca cgccggcgtt ggagcgacag gaaggagacg atcgtctgaa ggttgttctt
     2221 catcctgtgc tgcagctcgc gcatcagcac ttcggcgcgg ttgcgggcct cgagatgctc
     2281 ggcagtctgc tcgaccgact tgcgttccgt atcgtagcgg cgaaaggcca cgcccaggat
     2341 gttggcggcc gtcgtgagaa aggtgacgtc gtcgtcgcca aaggtacggg gtgtctccgc
     2401 gtcgacctcg agcacgcccc aggtgcggct gtcgaccatg acggggacgt tgaggaccga
     2461 gacgatgccg tggtcgcgca gcacgcctga aaggcggaac tcggggtcgt tcggcaggtc
     2521 ctcgatgatc accggaccgg cagtttgcac cgtccggccc ggtggcgagg cgctgtcgat
     2581 gccgagggtc acgacgccga cgacgccctg cttccaaccg acgccggcga cgacgaggag
     2641 atcgccacgg tcgggccgat actgcatcac cttaacgcgc ttgatgtggg tcacgcgcga
     2701 gacctgggcg gtgacgtagt gcatcaggcg ctcggccccg agcgactccg aagccgcccg
     2761 gctcagcgca gcgagcgcgt gctgatagtc gtgcatgcgc acgacccgct cctcgaggga
     2821 agctgcggtg cgacttttgg tcatggcagc ttaatggcgg ccttgagcgc cggtggcaac
     2881 gggctggcgc ctgccagtct ccgttaggcc gcccgcactg tcgcctggac catgcgatcg
     2941 acggtgattt cgtcgtcggg cgcaagcgcc atgagttccg tcagtcgagc ccgtgcccgg
     3001 ttgacccggc tcttgatggt gccgacaacg acgccgcaga cctcggccgc ctgctcgtag
     3061 gtcagtccct cggccccgac gagcaggatc gcctcgcgct gctcgggcga gagccgcgaa
     3121 agggccatct tgagatcctg gaagtccaga tgcgcgcctt gggccggggc caccgacagc
     3181 ttctcggccg ccgtgccctc gggatcctcg acctcgcgcc gccgtctgcg gtgttccgag
     3241 tagaagaggt tgcgcaggat ggtgaagagc caggcctgaa ggttcgtccc cggctcgaag
     3301 cggtcgagat ggctcaagcc tcgcaccacg gcgtcctgga cgagatcatc ggcgcggtcg
     3361 atgtcgccag tgagcgagat ggcaaacgcg cgcaggtgcg ggatcgcggc gagcagcgcc
     3421 gatcgcactt gcggctccaa ctgggtcgac ggcatgtgcc cctcgcgttc cgactgctgc
     3481 acgggcagta cgggtacgcc agaccgtcag gcctgccatt caccaaggtt tggcttagcc
     3541 gtaaggggag ccggatgcga ggctcgatac ctgaggcgat gacgctgggt gccagtgccc
     3601 tgcgacaacg tggcggggtc acgaagcgac cggccacctc gtgtgtgcga tccgcgagcg
     3661 cgaggaacgc ggatcgagcg ccctcacttt ttggcgggcg aggtcgcgcc tttcagcgac
     3721 ggggccgacg cgtttgtctt cggcttgtcc ttcttgggtt tcttggcctc acggtttccg
     3781 cgttgctcgc ctttgggcat gaccgggcac tcctgttgcg ccgccgagtg tagcgcgcgc
     3841 attatcgctt gtcgccgggc cgcattgcga cccacgccca gcgacgcaaa cttggcgaca
     3901 tcttgtcgaa aagaattgcc tctaggatgc gcaggtgcac gtcttgggag gcggacatgg
     3961 tcgacgacat cacgcgcgcg agcgacgcgc tgcgccttgc tgctgcggac tcgaacttcc
     4021 ggcctctgat accggccctg tccacctgtc cgacatgcgg caccgtcatc atggttgcag
     4081 cgcccgtcat cactacctgc ctcgactgcg gcgtcgtgtc cgtcgtgctc gatcgcacat
     4141 cggtggccgc ttccgcggct cacgatcttt cggtcgctgc ctgaggcagc ggacagcgtt
     4201 gccccatgcc gaaagggcga tgtcatggca cagcgcgcga gttggcagag acaccgggcc
     4261 gcacgcaccg cgcttgccct tgcggctgct gccgcggcgt tcgtgatggc cgccttcgcg
     4321 gcgctggacg cgagttcgca gcccgcgagg aggggcccgc cggcaacgct gcaggagacg
     4381 ggcctctatt cggattttga cagcctagag gtcgacccgc agcatcttcc cttcgcaccg
     4441 cagtacccgc tctggacaga cggggcggca aagcggcggt ggatctcctt gccgcccggc
     4501 actgcgatcg atgcgtcgga cccggaggcc tgggcattcc ccatcggcac gcggctgtgg
     4561 aaggagttct ccttcgacgg ccgccgtatc gagacgcggt acctcgagcg ccaggccgac
     4621 gggcaatggc tctatgccgc gtacgcgtgg agcgcggacg gccgcgcggc gcccctcgcg
     4681 ccgccgaggg gcaagtacgg tgcctacacc ttcgcgggtg ggcgttcgca caccatcccg
     4741 ggcgtcagtg actgccatgt ctgccaccgc ggaggcaggt cggaggtgtt gggcttcagc
     4801 gcgcttcagc tctcgcctga tcgcgaccct ctcgcggtgc atggcgagcc cgctcccggc
     4861 ccgggcgtcg acctcgcatt cctggtcgag aagggcctgc tcgtcggcta tccgacagcc
     4921 gtcccgcaaa ggtcgccgcg catcacggcg ggctcggcgg cggaacgtgc cgccctgggc
     4981 tacctgcacg gcaactgcgg gcactgccac aacgacaagg gctcgctgca gaatctagga
     5041 ctgttcctcc gccacatcga aggctcgaag gtcgaggcgg ccgtcgcgtc gaccatcggt
     5101 cagccggtca ggaagcctgc gccggggcaa tctgcggatg cggtgtcgcg cgtcgaggcg
     5161 gggcacccgg agcggagcgg cctcatgcag cgcgtcagct cgcgcacggc ggccctgcag
     5221 atgccgccgc tcggaacgga gctcgttgac gacgaggccg tggcgctcct gcagcgctgg
     5281 atttccgaga gggcgcaggt cgcgagcaac accgtcgaga agtaggagga agcgatgatc
     5341 catgcgttag gagtggcgtt ggcgattgcg ctttttgtgc cgactatggc cctggcacag
     5401 ggtggcccag cgagcgccaa gatcaaacgc ggcgagtacc tcgtcaccat cgggagctgc
     5461 cacgactgcc atacgccggc cgtcatgggg ccgaacggcc ccgaaccgga catgagccgg
     5521 gcactgtcgg gtcatccgca ggacatccgc atcgcgacgc cggcgcggct ccccgaaccc
     5581 tggatcgccg ccttctcacc gacgctgacg gcatggtcgg ggccttgggg cgtcagcttc
     5641 tccgccaatc tcacgcccga ttccgagaca ggcgtgctgc gcgactttac cgagcagcag
     5701 ttcatgcagg cgttgcgcac ggggcgccac cagggccaag gccggccgat cctgccgccg
     5761 atgccttggc gcttcatcgg cgagatgact gacgacgacc tgagcgcggt ctacgcctat
     5821 ctccgccaga tcccggccgt gaaaaacaag gtgcccgacc cgctgccccc cgcgaagtag
     5881 cgcttcgctc aagctctcgc cgcaagctgg gagaggaggg cccgccgcgc tccgctgcga
     5941 ggccctccaa tcgccggggg ccggatgtct tcatcccggg gcgacgccga ggtcttgcgc
     6001 cattgcgcgg acgtggcctg cgaagagttc gacgaactcc tcggcgatcg gcgaggggct
     6061 gcgctgcggc ggaaagacgg cggcgaactc gaagtcgatg cgcggcagga agggacgcga
     6121 gacgacgccc cgcggcgcga actcggcggc cgtgaatggg tcgcagacgg cgacgccgaa
     6181 gcccgaggag acgaggccgc acatgatctc cgacaagctc gtctcgaccc gcagcactcg
     6241 agagactccc gcttcggcga agacgcgatc ggtgaagtgc cggcccgggc tcgccgacgt
     6301 gagggagata aaggtttcgc cctcgaagtc gcgcgggcgc agggtcgcct tggcgcagag
     6361 acggtggccc tgcggcagca ctgcgacccg cggcagcgtc ggcatgggca ctgtcggcaa
     6421 gccggcgtgg gcaatgggca cctcggcaaa cccgaggtca cactgcaggt tcaagaccca
     6481 gtcgacgaca aggggcgaga tcacgccgaa cagcgtgagg tcgagatttg ggcgatcact
     6541 gaggaagcga cctgcgaagc gcggcatgaa gccgttggac agggcgggga gggcggcgac
     6601 gcgaagcatg cccgtgcggc gggtgcggat ctcctccgcg gctgcggcga tgcggtcgag
     6661 gcccgtgaac gagcgctcga cctccgtata gagcgcagtc gcggcggcgg tcggcacgag
     6721 ccccgttccg cgcctctcga acagcgcgac cttcagcacc aattgcaggt cgcggatgag
     6781 gcggctgacc gcaggctggg ttacccccat caggcctgct gcgccggtga cgctgcccga
     6841 cagcatcacg gcccggaacg cctcgacctg gcgcaaattg atccgcggca ccgccggctc
     6901 cctccatcac atggcgttat gaatatggct tcgttatgca tttgacgatc tccgtccgcc
     6961 ttgggaggct ttatggacgt cgccgtgcgc gacggctcgg cagaggggac aatcgcgatg
     7021 aagatctcaa gctctctttt ggcggcggcc ggcctcgtcg cgctcaacgt cgccgcgacg
     7081 cctgcgtcag cgcagcagaa gaccttctac gtcgcgggct atggcggctc gttcgagcag
     7141 accatgcgca ccgaggtcat tcccgatttc gagaagaagc acggcgtcaa ggtcgagtac
     7201 gtcgccggca actccacgga cacgctcgcc aagctccagg cgcagaaggg caaccagcag
     7261 atcgacgtcg ccattgtcga cgacgggccg atgtatcagg ccatccagct cggcttctgc
     7321 ggcaagctcc agggccttcc ggaagcggac ctctacgagg ctgcgcggtt caaggacgac
     7381 cgggccgtcg ccatcggtct cgtcggcacc gggctcatgt acaacaccaa ggtcttcgcc
     7441 gagaaaggct ggcccgcgcc gacgtcgtgg gacgatctga aggacccgaa gttcaagaag
     7501 ctgatcgtca tcccgccgat caacaacacc tacgggctct atacgctgct catgttcgcg
     7561 aagatgaacg gcggtggtga gaagaacatc gagcccggct tcaagatcat gaaggagcag
     7621 gtgaacccga acgtgctcgc ctacgagccg tcgccgggca agatgacgga gctgttccag
     7681 tcgggccagg ccgtgctcgc ggtatggggc acgggccggg tccagtcctt cgccaacacc
     7741 ggcttccccg tcgacttcgt ctacccgaag gagggtgccg tcaccctgct cgcgtcggcc
     7801 tgcccgatcg agaaggcgaa tgcctcgccg atggcctccg aattcatcaa ggcgatgctc
     7861 gagccgaaga tgcagctcat cctgctcaag gactacggct acggcccggt gaacaagacc
     7921 gtccaggttc ccgccgagct cggcaagatg gcgccggtcg gcgagcgtgc cgcgaagctc
     7981 tacaatcccg actggccgac catcaacgcg gtgcgcgagg actggaccaa gcgctggaac
     8041 cgcgaggtcg agcgctaggc gcgacgcttt ccggagtcga agtccctccc cgggcagggc
     8101 tcggggaggg acacctcggg acgcagcagg catcggcacc catgtcgttc ctcgaactcg
     8161 acagcgtcag caagcggttc ggcgatcacc tcgccgtcga agacttgcgc ctctcggtcg
     8221 ccaagggcga gttcatctcg ctccttgggc cttcgggctg cggcaagacc acgacgctgc
     8281 agatgatcgc cgggttcgtc gacctgacga cgggcgcgat ccggctcaac gggcgcgacc
     8341 tcgcgagcgt gaagccggcc aaacgcggcc tcgggatcgt gttccagagc tacgccctgt
     8401 tcccgcacat gacggccgcc gagaacgtcg ccttcggcct tgagatgcgt ggcgtgccgc
     8461 gcggcgagcg cgagacgcgg gtgcgcgatg tgctcgccat ggtggggctt gccggctacg
     8521 aggggcgcca cccgcgccgc atgtcgggcg ggcagcagca gcgcgtggcg ctcgcccgtg
     8581 ccctcgtcat caagcccgac gtcctcctcc tcgacgagcc cctgtcgaac ctcgatgcca
     8641 agctgcgcga gggcatgcag atcgagttgc gccagatcca gcgcaatctc ggaacgacga
     8701 ccgtgctggt cacccacgac cagaccgagg ccatggcgct ctcggaccgg atcgttgtca
     8761 tgaacgcagg ccgcgtcgag cagatcggta cgccgcagga aacctacgag cggcctgcct
     8821 ccgccttcgt gtcccagttc ctcggcaaga ccaatgagtt ccgggcctat gtcgaggccg
     8881 ggtcgggggc gccgcgcctt gtggcgggct cctgcgcatg gcccgcgccg gccggcgcga
     8941 ccgggaccgt aacgatcagc gttcgtccgg aaaaggtggg gttcgccggc gacggcgcgt
     9001 cgggcctcgc a
//
LOCUS       DASQWN010000012         2212 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_597538, whole genome shotgun sequence.
ACCESSION   DASQWN010000012 DASQWN010000000
VERSION     DASQWN010000012.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2212)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2212)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2212
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_597538"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..835)
                     /locus_tag="VE686_00235"
     CDS             complement(<1..835)
                     /locus_tag="VE686_00235"
                     /EC_number="6.1.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020086833.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004817 - cysteine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_process: GO:0006423 - cysteinyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine--tRNA ligase"
                     /protein_id="HYY82909.1"
                     /translation="MATLRLYNTLTRSKDVFRPIDPANVRMYVCGPTVYDYAHIGNAR
                     PVIVFDVLFRLLRHLYGPGHVTYVRNITDVDDKINARAARDFPDLPLNEAIARVTAAT
                     EAQFHADIAALGVLPPTVEPRATEHIGEMTALIERLVANGHAYVAEEHVLFSVPSMPE
                     YGRLSKRPLDEMEAGARVDVAPYKRSPLDFVLWKPSKPGEPAWPSPSGIAAPGRPGWH
                     IECSAMSWKHLGEVFDIHGGGVDLVFPHHEDEIAQSEASTGKPFVRTWLHCAHLQMGG
                     QK"
     gene            1115..1450
                     /locus_tag="VE686_00240"
     CDS             1115..1450
                     /locus_tag="VE686_00240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012330439.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY82910.1"
                     /translation="MHRALAVFGFVGILALGAASFTVLPTGATKAAATADNATFLIPA
                     SDGYGVEDCLSSSSECGKVIANAWCEAHGFAKAASFGLAAPEDVTGSIERPAAVRTAD
                     RPLSITCSE"
     gene            complement(1670..2182)
                     /locus_tag="VE686_00245"
     CDS             complement(1670..2182)
                     /locus_tag="VE686_00245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019400057.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CreA family protein"
                     /protein_id="HYY82911.1"
                     /translation="MRRRVIFGLVFAAAAAASGLAAAEEPDRLFSKSTVWRPLTPNDK
                     LVVYGIDDPAIEGVACHYTAPERGGVKGTLGLAEEVSDISLSCRQIGPVRFKEKFEQG
                     DVVFSERRSLIFKRMQIVRGCDAKRNTLAYLVYSDRPVEGSPKNSTSSVPLMPWGTEP
                     PPKCGDWLKS"
BASE COUNT          331 a          748 c          775 g          358 t
ORIGIN      
        1 tcttctggcc gcccatctgc aggtgcgcgc agtgcagcca cgtgcgcacg aacggcttgc
       61 cggtcgacgc ctccgactgt gcgatctcgt cctcgtggtg cgggaacacg aggtcgacgc
      121 cgccgccgtg gatgtcgaag acctcgccga ggtgcttcca ggacatcgcc gagcactcga
      181 tgtgccagcc cgggcgcccg ggcgccgcga tgccggacgg cgacggccac gccggctcgc
      241 cgggcttcga gggcttccac aggacgaaat cgaggggcga gcgcttgtag ggcgcgacgt
      301 cgacgcgggc gcccgcctcc atctcgtcga ggggccgctt cgacaggcgg ccgtactcgg
      361 gcatggacgg cacgctgaac agcacgtgct cctccgccac gtaggcatgg ccgttggcga
      421 cgaggcgctc gatcagcgcc gtcatctcgc cgatgtgctc ggtcgcgcgg ggctcgacgg
      481 tcgggggcag cacgccgagc gcggcgatgt cggcgtggaa ctgcgcctcg gtcgcggccg
      541 tcaccctggc gatcgcctcg ttgaggggca ggtcggggaa gtcgcgcgcc gcacgcgcgt
      601 tgatcttgtc gtccacgtcc gtgatgttgc ggacgtaggt gacgtgcccc ggcccgtaga
      661 gatggcgcag gagccggaac agcacgtcga agacgatgac ggggcgcgcg ttgccgatgt
      721 gggcgtagtc gtagaccgtc gggccgcaca catacatgcg cacgttcgcc ggatcgatcg
      781 gacggaacac gtccttcgag cgcgtcagcg tgttgtagag gcgcaacgtc gccatcgaaa
      841 agaatctccg ggccagcggc cggaagtcga tgtcgatcta tgaattgaga acgaaaacgg
      901 ctccagccag cgggttacgc tagcggcaaa tggtgttgaa ccggcaaatg ctcggggccg
      961 tcgtcatggc cgcgatgttt gcctcgggcc cgcgaatccg tcaaggcggg cgtcctcgag
     1021 ggttcaagcg cggggcgcct tttaggcttt cttcaccctt ttgccccgag actgaccctc
     1081 gtcctcaatc gccggctatc ggggctttga acgcatgcat cgcgcactcg cggtcttcgg
     1141 gttcgttgga atcctcgcgc tcggcgcggc gtcgttcacg gtcctgccga ccggggcgac
     1201 caaagcggcc gcgacggccg acaacgcgac cttcctcatc ccggcgagcg acgggtacgg
     1261 cgtcgaggat tgcctgtcgt cgtcgagcga gtgcggcaag gtcatcgcca acgcctggtg
     1321 cgaggcgcac ggctttgcca aggccgcgag cttcggcctc gccgccccgg aggacgtcac
     1381 cggctcgatc gaacgcccgg cggccgtgag aacagccgac cgcccgctgt cgatcacctg
     1441 ctccgagtga gcccctgaag cgctttccgg ccattcgagc gccatccctc cccgcgaggg
     1501 gagggcgagt cgcgcctgca ggcgcgaccg gggtggggcg gaagctctga gcctatcgtc
     1561 ttgagcacgg aggtgttcgc cccacccggg cgggcgctga cgcgcccgtc tccgccctcc
     1621 cctcgcgggg agggatcatt gggcgccgtc gcgccatgct cgtgcgaact cagctcttca
     1681 gccagtcgcc gcactttggc ggcggctcgg tgccccaggg catgagcggc acgctcgagg
     1741 tcgagttctt gggcgagccc tccaccggcc ggtcggagta gacgagatac gcgagcgtgt
     1801 tgcgcttggc gtcgcagccg cggacgatct gcatgcgctt gaagatgagc gagcggcgct
     1861 cgctgaagac gacatcgccc tgctcgaact tctccttgaa gcgcaccggc ccgatctgcc
     1921 ggcacgagag cgagatgtcc gagacctcct cggcaaggcc gagggtcccc ttgacgccgc
     1981 cgcgctccgg cgcggtgtag tggcaggcga cgccctcgat ggcgggatcg tcgatgccgt
     2041 agaccacgag cttgtcgttc ggagtcagcg ggcgccatac cgtcgacttg ctgaacagcc
     2101 ggtccggctc ctcggccgcc gcgaggcctg acgcagctgc cgcagccgcg aagaccagcc
     2161 caaagatcac gcggcgccgc atcgtgccct ccttcgtcgg gctcgcatgt gg
//
LOCUS       DASQWN010000013         2457 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_597562, whole genome shotgun sequence.
ACCESSION   DASQWN010000013 DASQWN010000000
VERSION     DASQWN010000013.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2457)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2457)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2457
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_597562"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(97..699)
                     /locus_tag="VE686_00250"
     CDS             complement(97..699)
                     /locus_tag="VE686_00250"
                     /inference="COORDINATES: protein motif:HMM:NF013718.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatase PAP2 family protein"
                     /protein_id="HYY82912.1"
                     /translation="MRLVYIVTGLGDSALLLPGSVALLGYLLWRRQARVALAWLAALA
                     LCLGLTALAKVAFMACGGHVTALRMDSPSGHASFSAAFYGACAVVAAFHRPRLQRIAI
                     HAAAIMLVLAIGASRVALGVHSPEEVLSGLLIGGVCVQAFALAGMPAERKPIRIAPLA
                     LVRALIALPVVATGRHLSAEAFLEGIADRLAPAVGCAARP"
     gene            complement(837..1307)
                     /locus_tag="VE686_00255"
     CDS             complement(837..1307)
                     /locus_tag="VE686_00255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009492593.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY82913.1"
                     /translation="MEYKPVEQLRTLADLRVAEPACLTRRERLERWAEVLEREPEARL
                     RSLGEIEFHPREERPLMRADDSPLSVAYADPVLRAAGLRSDTLGDAMLFFDLSERQAH
                     RLLCSCMNGWSISASRAGAQVRHIANPDLRLRAAAWSAGAVAVAGAPALLYLFG"
     gene            complement(1439..>2457)
                     /locus_tag="VE686_00260"
     CDS             complement(1439..>2457)
                     /locus_tag="VE686_00260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003598019.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="SpoVR family protein"
                     /protein_id="HYY82914.1"
                     /translation="MNHGVHRYPRKKKPDLRSEERRERERREHQEQIFNDLWRTVPKT
                     GKATASDLSDERRRALLEVPQENILYFVEKTAPRLQPWQREILRIVRHVAQYFYPQGQ
                     TKVMNEGCATFSHYAIMTRLHDRQLIDDGSYLEFLRSHTNVVSQPEFDDPHYGGLNPY
                     AIGFAMMQDIERISVDPTEEDRAWFPEIAGSRDPYEVLKDVWANYRDESFVAQFLSPR
                     LMRQWRMFQLVDDADQSHLRVDAIHDERGYRRIRRALARQYDVAWLDPDIQVVDVDLA
                     GDRKLILHHNVLNRILLDEADARGVLQHLADLWGYDVLLQEIEPATGTVLKEHTASAR
                     RTFF"
BASE COUNT          391 a          820 c          889 g          357 t
ORIGIN      
        1 atggcgacca agatgccgtt cgtcggccgc ggctgaggcg aggcacgatc tggtccaacc
       61 cgtcgccccc tcccccgttt tgggggagcg ccgttgtcac ggtctcgcgg cgcagcccac
      121 cgccggcgcg aggcgatcgg cgatgccttc gaggaaggcc tcggcgctga ggtgccgccc
      181 ggtggcgacc accggcagcg cgatcagcgc gcgcaccagc gcgagcggcg cgatgcggat
      241 aggctttcgc tcggcgggca ttccggcaag cgcgaaggcc tggacgcaca cccccccgat
      301 gaggagcccg ctcagaacct cctcggggct gtggactccg agcgcgaccc ggctcgcgcc
      361 gatggccagc acgagcatga tcgccgccgc atggatggcg atgcgctgga gccgaggccg
      421 gtggaacgcc gcgacgaccg cacaggcgcc atagaacgcg gcgctgaagc tcgcgtggcc
      481 gctcgggctg tccattctga gcgccgtgac gtgcccgccg caggccatga acgccacctt
      541 ggcgagggcg gtcaggccga ggcagagggc aagcgctgcg agccacgcga gcgcgacccg
      601 ggcctgccgg cgccacagaa ggtatccaag gagcgcgacc gagcccggca ggagcagagc
      661 cgagtcgccc aaccctgtga cgatgtaaac gagacgcaaa ccacggggct ccggcggccg
      721 gcgcgccaca tgcagcagcg aacgccacgg aacccgtaaa gtcggatcgg cacgagggca
      781 acgtgccgga ggcggttgcc cgcgtccggc cgttcacgtt cgaaggagcg cggccctcag
      841 ccgaacaggt agagcaaggc cggcgcgccc gcgaccgcca cggcaccggc gctccaggcg
      901 gcagcgcgca ggcgcagatc gggattggcg atgtggcgga cctgcgcccc ggcccggctg
      961 gcggaaatgc tccagccgtt catgcacgag cacaggagac gatgcgcctg gcgctcggag
     1021 aggtcgaaga acagcatcgc gtcgccgagc gtgtcgctcc gaagcccggc cgcgcgcagc
     1081 accggatccg cgtaggcgac gctgagcgga gaatcgtcgg cgcgcatgag cggccgctcc
     1141 tcgcgcgggt ggaactcgat ctcgcccagc gagcgcaggc gcgcttcggg ttcgcgctcc
     1201 aggacttcgg cccagcgctc gaggcgctcg cggcgcgtca ggcacgcggg ctcggcgacc
     1261 cgcaggtcgg caagggtacg cagctgttcg acgggcttgt attccatggg accttctccc
     1321 ttcgagagaa gaccgcgcgg tgaccggcgc accgccgatc ctccttcaac ggaaccatcg
     1381 tcgttccggt ccgcggcaac actggggcag aaacaaaagt tccgtgcccg aatcggcgtc
     1441 agaagaaggt gcggcgtgcg ctcgcggtat gctctttcag cacggtcccg gtggccggct
     1501 cgatctcctg caggaggaca tcgtagcccc acaggtcggc gagatgctgc agcacgcccc
     1561 gggcgtcggc ctcgtcgagc aggatgcggt tcagcacatt gtgatgcagg atcagcttgc
     1621 ggtcgccggc gaggtcgacg tcgacgacct ggatgtccgg atcgagccag gcgacgtcgt
     1681 actgacgagc gagcgcgcgg cggatgcggc ggtagccgcg ctcgtcatgg atcgcatcga
     1741 cgcgcaggtg cgattggtcg gcgtcgtcga cgagctggaa catgcgccac tgccgcatca
     1801 gccgcgggct aaggaactgc gccacgaagc tctcgtcgcg gtagttggcc cacacgtcct
     1861 tgagcacctc gtaggggtcg cgcgagccgg cgatctcggg gaaccacgcc cggtcctcct
     1921 cggtcgggtc gaccgagatg cgctcgatgt cctgcatcat cgcgaagccg atggcgtagg
     1981 ggttgaggcc accgtagtgc gggtcgtcga actcgggctg cgagaccacg ttcgtgtgcg
     2041 accgcaggaa ctccaggtac gagccgtcgt cgatgagctg ccggtcgtgc aggcgcgtca
     2101 tgatggcgta gtgcgagaag gttgcgcagc cctcgttcat caccttggtc tgcccctggg
     2161 ggtagaagta ctgggcgacg tggcggacga tgcggaggat ctcgcgctgc cacggctgca
     2221 gccgcggcgc cgtcttctcg acgaagtaga ggatgttctc ctgcggcacc tcgaggaggg
     2281 cgcgccggcg ctcgtcggac aggtcgctcg ccgtcgcctt gccggttttc ggtaccgtgc
     2341 gccagaggtc gttgaagatc tgctcttggt gctcgcggcg ctcccgctcg cgccgctcct
     2401 cggagcgcag gtccggcttc ttcttgcgcg ggtagcggtg gacgccgtgg ttcatga
//
LOCUS       DASQWN010000014         5421 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_994715, whole genome shotgun sequence.
ACCESSION   DASQWN010000014 DASQWN010000000
VERSION     DASQWN010000014.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 5421)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5421)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5421
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_994715"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..181)
                     /locus_tag="VE686_00265"
     CDS             complement(<1..181)
                     /locus_tag="VE686_00265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009493901.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1289 domain-containing protein"
                     /protein_id="HYY82915.1"
                     /translation="MARISTPCIRVCSLDAEVGLCAGCGRTAEEIAGWLRLSEEDRLR
                     IMAELEDRMRRAYAAL"
     gene            complement(200..982)
                     /gene="cobS"
                     /locus_tag="VE686_00270"
     CDS             complement(200..982)
                     /gene="cobS"
                     /locus_tag="VE686_00270"
                     /EC_number="2.7.8.26"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009493900.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008818 - cobalamin 5'-phosphate synthase
                     activity [Evidence IEA];
                     GO_process: GO:0009236 - cobalamin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenosylcobinamide-GDP ribazoletransferase"
                     /protein_id="HYY82916.1"
                     /translation="MSDLVRCLRFYSRLPTPVLPWETDPHGVPDFRTMPRMLPLAGVV
                     IGMVGATAMVAALSLGLGTLLSAVLAIGTLTIVTGAFHEDGLADAADGLGGGATPERR
                     LEIMRDSRIGSYGGAALILAFGLRIAALATLAERMSTGSVAMAIIMTACVSRVAALLL
                     FGLSPPARSTGAAYVVGQPSMSTLATACVLAVGIAAALGAAGGLPLRGLTLGLALAVA
                     VAVAAARIASRLVGGHTGDIAGATQQIAEIALLVALLIASPP"
     gene            1112..2152
                     /gene="cobT"
                     /locus_tag="VE686_00275"
     CDS             1112..2152
                     /gene="cobT"
                     /locus_tag="VE686_00275"
                     /EC_number="2.4.2.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012605877.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008939 -
                     nicotinate-nucleotide-dimethylbenzimidazole
                     phosphoribosyltransferase activity [Evidence IEA];
                     GO_process: GO:0009236 - cobalamin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nicotinate-nucleotide--dimethylbenzimidazole
                     phosphoribosyltransferase"
                     /protein_id="HYY82917.1"
                     /translation="MTMMTTTDSAAPFDDILRLIGSMPGPDEAAVAAVRDRDRNLTKP
                     TGSLGRLEWIVEWLAAWQGKAKPSVDRPLVCVFAGSHGVAKRGVSAYPDSVNRQMLDN
                     FAAGGAAVSQICATLGLGFKVFDLALDVPTNDIVEAPAMDEKACVATMAFGMECIAGG
                     ADLLALGDMGIGNTTIAAAIYAALYGGPAEKWVGRGTGLDDAGLARKAAAVDAAIAYH
                     REHLDSPLEVLRRVGGREIAALAGAILAARLERIPVVLDGYVVTAAAAVLHAIEPTSI
                     DHCVAGHLSAEGAHQEVLERMNKIPLLALGMRLGEGSGAALAAGIIKTAAAVHGGMAT
                     FEQAGVSRAGGS"
     gene            complement(2149..3675)
                     /locus_tag="VE686_00280"
     CDS             complement(2149..3675)
                     /locus_tag="VE686_00280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018042500.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_function: GO:0004673 - protein histidine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAMP domain-containing sensor histidine kinase"
                     /protein_id="HYY82918.1"
                     /translation="MNELTADDIQRGQGTASDDVSRRRRIAQDVRAAREKLTSSIGLR
                     RAFDYELVRLYAQYRVGAAVPLAMLALAVGAGATVWLPITALTLPLVVVLGAIGFTAA
                     LAQAFLRKDPETVPLRTWRRSFLLGDLLQAASWTLIVPALGEIHAPGAGTFVSFLLVM
                     LAAVVAMLSATIPAAVYAGIAPLMLGVLGMLWRSWPAIDALMLAVMAISAQAFFVVLA
                     NRLYCSAVATLQSRAEKDALFSELEQAKANSDEARRRAEEANMAKSRFLATMSHELRT
                     PLNAILGFSEVMKNEVFGVHASPTYREYSNDIHGSGQHLLALINEILDLSRIEAGRYE
                     LNEEAIQLAHIVEDCRHMMGLRAKAKAQAIKDAIDPSLPRIWADERAVRQIVLNVLSN
                     AVKFTPPGGEIVLKVGWTSSGGQYVSVRDSGPGIPDEEIPIVMSSFGRGSLAIKTAEQ
                     GSGLGLPIVKGLVDLHGGNFRLVSRPREGTEVIVTFPAERVMDTLPAVDLAKPSRSAA
                     "
     gene            3900..4511
                     /locus_tag="VE686_00285"
     CDS             3900..4511
                     /locus_tag="VE686_00285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008875843.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione S-transferase"
                     /protein_id="HYY82919.1"
                     /translation="MKLYNTRVAPNPRRVRIFLAEKGVSVPTVEVDLGRMEHKAPDYV
                     AVNPLQRTPALALDDGTIITESIAICRYFEELHPEPPLFGTTPLERATVEMWQRRMEF
                     GLLGPVAAAFRHLHPAMAQMEVPQVAAWGESNKPKVLEFIAFLDRHLADRPFVCGERL
                     TVADITGLVAVDFMKPARVVLPDEAANVRRWHAELAARPSAGA"
     gene            4516..5259
                     /locus_tag="VE686_00290"
     CDS             4516..5259
                     /locus_tag="VE686_00290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014491344.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HYY82920.1"
                     /translation="MRLTVVGCGDAFGSGGRANACFWLETGAATVALDFGATSLVALK
                     RMGLDPNRIDAVLISHLHGDHFGALPFLLLDAQFDSGRERPLTIVGPVGLRERLAAAQ
                     EVFFPGSSKNQWRFKLEVVELPCGTPLRVAGADVVSFEVIHPSGAPATALRLSDGVRT
                     LAYSGDTSWTDRLVDAAQGADLLIVECYRLASAPANHLDLATLEDKRAVLGAKRILLT
                     HMSDEVLSEAGTIAAKGYEVARDGLVVDI"
     gene            complement(5272..>5421)
                     /locus_tag="VE686_00295"
     CDS             complement(5272..>5421)
                     /locus_tag="VE686_00295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018044486.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="modification methylase"
                     /protein_id="HYY82921.1"
                     /translation="VGSIHKIGALAQGLPACNGWTFWHAERKGRLVVVDEFRSIVRAG
                     MGSAA"
BASE COUNT          833 a         1884 c         1916 g          788 t
ORIGIN      
        1 cgagggcggc gtaggcgcgg cgcatgcggt cctctagctc agccatgatg cgcaggcggt
       61 cctcctcgct gaggcggagc cagccggcga tctcctcggc cgtgcgcccg cagcccgcgc
      121 agagcccgac ctcggcgtcg aggctgcaga cccggataca aggggtggaa atgcgcgcca
      181 tgagccaccc cttatctcgt cacggcggcg aggcgatcaa gagggcgacc aggagcgcga
      241 tctcggcgat ctgctgcgtc gccccggcga tgtcgcctgt gtgaccgccg acgagcctcg
      301 acgcgatgcg cgctgccgcg actgcgacag caacggcgag cgccagcccg agcgtgagac
      361 cgcgcagcgg cagcccgccg gcggctccga gtgccgccgc gatgccgacc gcgaggacgc
      421 aggctgtcgc aagggtcgac atggagggct ggccgacgac gtaggcggcg cccgtcgacc
      481 gggccggtgg cgacaggccg aacagaagga gcgccgccac ccgcgagacg cacgccgtca
      541 tgatgatggc catggcgacg gagccggtac tcatgcgctc cgcgagggtc gccagggcgg
      601 cgatccgaag cccgaaagcc aggatcagcg ccgcgccccc gtaagagccg atgcggctgt
      661 cgcgcatgat ctcgaggcgc cgctccgggg tcgcgccgcc gccgaggccg tcggccgcgt
      721 cggcaagacc gtcctcgtgg aaggcgccgg tcacgatggt gagcgtccca atggccagga
      781 cggccgagag cagcgtgccg aggccaaggg agagtgcggc aaccatcgcg gtcgcgccga
      841 ccatgccgat gacgacaccc gcgaggggca gcatgcgcgg catggtgcgg aagtcgggaa
      901 cgccgtgggg atccgtctcc cacggcagca cgggcgtggg caggcgggaa tagaaccgca
      961 ggcagcgcac aaggtccgac aacgctgttt tgccggcgtc ggctgctcct cgccgcgtaa
     1021 tgcctcgttc tcgcgccatg ccgctgcctt cacccggggt gccgcgcccg ttatagaccc
     1081 gcgggcggcg ggcgcaggct tttgcgcggg gatgacgatg atgacgacaa cggattcggc
     1141 cgcgccgttc gacgacatcc tgcgcctgat cggatcgatg cccggcccgg acgaggccgc
     1201 ggtcgcagcc gtgcgcgacc gcgaccgcaa cctcaccaag cccaccggaa gcctcgggcg
     1261 gctcgagtgg atcgtcgagt ggctcgcggc ctggcagggc aaggcgaagc cgagcgtcga
     1321 ccgccccctc gtctgcgtct tcgcgggcag ccacggcgtc gccaagcgcg gcgtctcggc
     1381 gtaccccgac agcgtgaacc ggcagatgct cgacaacttc gccgccggag gggccgccgt
     1441 gagccagatc tgcgcgacgc ttgggctcgg cttcaaggtc ttcgacctcg cccttgacgt
     1501 tccgacgaac gacatcgtcg aggcccctgc catggacgag aaggcgtgcg tcgccaccat
     1561 ggccttcggc atggaatgca ttgccggggg tgccgatctt ctcgcgctcg gcgacatggg
     1621 catcggcaac accacgatcg ccgccgcgat ctacgccgcc ctttatggcg gaccggcgga
     1681 gaaatgggtc gggcgcggca ccggcctcga cgatgccggg ctcgcccgga aggccgccgc
     1741 cgtcgacgca gcgattgcct accaccgcga gcacctcgac agcccgctcg aggtgcttcg
     1801 ccgggtcggc gggcgcgaga tcgcggcgct tgccggcgcg attctcgccg cccggcttga
     1861 gcgaatcccc gtggtcctcg acggatacgt ggtgacggcc gcggctgccg tccttcacgc
     1921 catcgagccg acctcgatcg atcattgcgt ggccgggcac ctctccgccg agggcgcgca
     1981 ccaggaggtg ctcgagcgca tgaacaagat cccgctgctc gcgctcggga tgcggctggg
     2041 ggaggggagc ggcgcggccc tcgcggccgg gatcatcaag acggcggcag ccgtgcacgg
     2101 cggcatggca accttcgagc aggccggcgt gtcgcgcgcg ggcggctctt aggccgccga
     2161 ccggctcggc ttggcgagat cgacggccgg cagcgtgtcc atgacgcgct ccgccgggaa
     2221 ggtgacgatc acctcggtgc cctcgcgagg cctcgatacg aggcggaagt tgccgccgtg
     2281 caggtcgacg agtcccttga cgatgggcag cccgagaccg gagccctgct cggccgtctt
     2341 gatggcgagg gatccccgcc cgaaggacga catcacgatc gggatctctt cgtccgggat
     2401 gccaggtccg ctgtcgcgaa cgctgacgta ctggccgccc gaggaagtcc agcccacctt
     2461 gaggacgatc tcgcctccgg gcggcgtgaa cttcacggcg ttagaaagga cgttgagcac
     2521 gatctggcgc accgcccgct cgtccgccca gatccgcggc agcgaggggt cgatcgcgtc
     2581 cttgatggcc tgcgccttgg ctttcgcgcg caagcccatc atgtgccggc aatcctcgac
     2641 gatatgggcg agctggatgg cctcctcgtt gagctcgtag cggccggcct cgatgcgcga
     2701 gaggtccagg atctcgttga tgagcgcgag gaggtgctgc ccgctgccgt ggatgtcgtt
     2761 cgagtactcg cgataggtcg gcgaggcatg cacgccgaag acctcgttct tcatgacctc
     2821 cgagaagccg aggatggcgt tcagcggcgt gcgcagctca tggctcatgg tggcgaggaa
     2881 gcgcgacttc gccatgttgg cttcctcggc gcgtcggcgc gcctcgtccg agttggcctt
     2941 ggcctgctcg agctcgctga acagggcgtc cttctcggcg cgcgattgca gggtcgcgac
     3001 cgcgctgcag tagagccggt tcgccagcac cacgaagaac gcctgcgcgc tgatggccat
     3061 cactgcgagc atcagcgcgt cgatggcggg ccatgatcgc cagagcatgc ccagcacgcc
     3121 gagcatgagc ggcgcgatgc cggcgtagac cgccgccggg atcgtcgctg acagcatggc
     3181 gacgacggcg gccagcatca ccaggaggaa cgagacgaac gttccggctc ccggcgcatg
     3241 gatctcgccc agcgccggga cgatgagggt ccagctcgcg gcctggagca ggtcgccgag
     3301 caggaaggaa cgccgccagg tccgcagcgg cacggtctcg ggatccttgc gcaggaacgc
     3361 ctgcgcgagc gccgccgtga acccgatcgc gccgaggacg accacgaggg gcagcgtgag
     3421 cgcagtgatc gggagccata ccgtcgcccc ggcgccgacg gcgagcgcga gcatggcgag
     3481 cggcacggcg gcgccgaccc ggtactgcgc gtaaaggcgg accagctcgt aatcgaacgc
     3541 gcggcgcagc ccgatggacg acgtgagctt ttcgcgcgcg gcgcggacgt cttgcgcgat
     3601 ccggcgccgg cgcgacacgt cgtccgacgc cgtgccttgg cctctctgga tgtcgtccgc
     3661 ggtgagctcg ttcatgtcga cgcctgccgc cgtcgaatat gctttccaac cgttaagctc
     3721 tcccttcgcg gaagctcgaa aaggcggacg gtcggtccaa tgtgtgcccg cgcacatcga
     3781 tgccggatgc agtgcggtag ggtaggtcac ttcctcccga gaccttgggc gcggcgcgag
     3841 ccgcgccttt tctttgtcgc cgcgcccgtg cacaaacgca ggcctggagg cggacgatca
     3901 tgaagctcta caacacgcgc gtcgccccga acccgcgtcg cgtccgcatc ttcctcgccg
     3961 agaagggcgt atccgtgccg accgtcgagg tcgacctcgg caggatggag cacaaggccc
     4021 cagactacgt cgccgtgaac ccgctccagc gcacgccggc gctggcgctg gacgacggca
     4081 ctatcatcac cgaatcgatc gccatctgcc gctacttcga ggagctccac ccggagccgc
     4141 cactgttcgg gacgaccccg ctcgagcgtg cgaccgtcga gatgtggcag cgccgcatgg
     4201 agttcggcct gcttggaccg gtcgcggcgg ctttccgcca tcttcacccg gcgatggcgc
     4261 agatggaggt gccccaggtc gccgcctggg gcgagtcgaa caagccgaag gtcctcgagt
     4321 tcatcgcctt cctcgatcgc cacctcgccg accgcccctt cgtgtgcggc gagcgtctta
     4381 cggtcgccga catcaccggc cttgtggcgg tcgacttcat gaagcccgcg cgcgtggtgc
     4441 tcccggacga agcggcgaac gtccgccgct ggcacgcgga gctggctgcg cgtccgagtg
     4501 cgggagcctg acgcgatgcg gctcacggtc gtcggctgcg gtgacgcgtt cggctcgggc
     4561 ggacgcgcca acgcctgctt ctggctcgag accggcgccg cgacggtggc gctcgacttc
     4621 ggcgccacct cgctcgtcgc gctcaagcgc atgggcctcg acccgaacag gatcgacgcc
     4681 gtcctgatct cgcatctgca cggcgaccat ttcggggcgc tgccgttcct tctcctcgac
     4741 gcgcagttcg acagcgggcg cgagaggccc ctcaccatcg tgggcccggt cgggttgcgc
     4801 gagcgccttg cggcggccca ggaagtattc ttcccggggt cgtcgaagaa ccagtggcgg
     4861 ttcaagctcg aggtcgtgga gctgccgtgc ggcacgccgc tgcgggtcgc gggcgccgac
     4921 gtcgtcagct tcgaggtcat ccacccctcg ggcgcccccg cgacggcgct ccgtctgagc
     4981 gacggcgtgc ggaccctcgc gtattcgggt gacacaagct ggacggaccg gctcgtcgac
     5041 gccgcccagg gcgccgatct cctcatcgtc gaatgctacc ggctggcgag cgcgccggcg
     5101 aaccacctgg acttggcaac gctcgaggat aagcgcgccg tcctcggcgc caagcggatc
     5161 ctgctcacgc acatgagcga cgaggtgctc agcgaagccg gcaccatcgc ggccaagggc
     5221 tacgaggtgg cgcgcgacgg actcgtggtc gacatctaag ccgagcgccg ctcaggcggc
     5281 gctgcccatt ccggcgcgga cgatcgagcg gaactcgtcg acgacgacca ggcggccctt
     5341 gcgctcggca tgccagaagg tccagccgtt gcaggccggc agcccctgcg cgagggcgcc
     5401 gatcttgtgg atcgagccga c
//
LOCUS       DASQWN010000015         4315 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_697128, whole genome shotgun sequence.
ACCESSION   DASQWN010000015 DASQWN010000000
VERSION     DASQWN010000015.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 4315)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4315)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4315
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_697128"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..198)
                     /locus_tag="VE686_00300"
     CDS             complement(<1..198)
                     /locus_tag="VE686_00300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012093699.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HYY82922.1"
                     /translation="MTERLTADVAIIGGGTAGCAAAVALRTAGMSVVLFEKGLCGAGA
                     SGVNFGGVRQQGRHMAELPLAR"
     gene            complement(195..1556)
                     /locus_tag="VE686_00305"
     CDS             complement(195..1556)
                     /locus_tag="VE686_00305"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020011989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD/NAD(P)-binding oxidoreductase"
                     /protein_id="HYY82923.1"
                     /translation="MADPIVVIIGAGPAGVRAAQTLAGAGLRPILFDEAERPGGQIYR
                     QPPGGVSAQTTVYGFEARKAGAIHRTLGDLADAVDYRPRTLVWNLFQDRLDLLTVQGY
                     GEQRFNRLILATGAMDRVLPFPGWTLPGVFTLGAAQIAFKAQGVSIGRRVALIGAGPL
                     LPLVADQYATAGAEVVAVLDTTPFLTKVRHAPGLLTESTTFAKGLWYTARNKLRGLNV
                     RYGVQALRAEGARQVEALVFRDRAGKEHRIACDGIGASFGLRSEAQLADLAGCAFGFD
                     AVERQWRPQTTQEGRSSVPAIYLAGDGARIGGADIAELQGRRTALAVLEDLGRRVAPS
                     ETGDLDRALKRQAGFRRALEAAYPFPTHLLDDVGDDEIVCRCEGVTAGALRRAACDQD
                     APEVNRLKALTRVGMGRCQGRVCGHVAAELLARARGCPIESVGRLRAQPPIKPIPVLG
                     GDA"
     gene            complement(1549..1797)
                     /locus_tag="VE686_00310"
     CDS             complement(1549..1797)
                     /locus_tag="VE686_00310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008962224.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="(2Fe-2S)-binding protein"
                     /protein_id="HYY82924.1"
                     /translation="MPFTIDGDAFEAREGDLLMTAILLHRPALRRFEFGDADRAGFCF
                     MAACQDCWVSLGDGRRVRACSTAVERGIAVLTEEGRDG"
     gene            1951..3105
                     /locus_tag="VE686_00315"
     CDS             1951..3105
                     /locus_tag="VE686_00315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012631203.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mandelate racemase/muconate lactonizing enzyme
                     family protein"
                     /protein_id="HYY82925.1"
                     /translation="MQVEAINVYLVTAGKLHPVIVEIITDEGITGIGEAAIAYGVGGT
                     AAAGMVKDLSARIVGRDPSRIEELWSEMYDHSFWAKGGGAIVFAGISAIEQALWDIKG
                     KALGVPVYELLGGRIRDEIRVYANGWYGPSRTPAELANAAERPLREGYKALKCYPLAQ
                     WDGAGLRHVTNRQVDRSFANLAFEKVRTLREAVGPEVELMLDLSGGLTTDETIRLCRR
                     FEELDITWVEEPADPFDVGALKKISDKVSIPVAVGERLYTRHAFRKIFEQHAADIVQP
                     DVGNTGGIMEVKKIAAMAEAYNMRVAPHNCATALSTAASLQIAACISNFMTQEIYPYF
                     PERPGYIQVLEDSPEERIKDGVVAVPTAPGLGVALAAERLHPFLWANVRC"
     gene            complement(3351..>4315)
                     /locus_tag="VE686_00320"
     CDS             complement(3351..>4315)
                     /locus_tag="VE686_00320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003599157.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015293 - symporter activity [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="cation:dicarboxylase symporter family
                     transporter"
                     /protein_id="HYY82926.1"
                     /translation="AVAGYAAAAEKDTFVAHVLALIPKSFFDAFAGGDLLQVLLVSVL
                     TGVVVLQLGERTQQINYAIETMGQIFFKIIGLVVKLAPIGAFGAMAFTVGQYGLGSLG
                     NLLGLVLTFYLTSVLFVLVVLGAIAWWAGFSILRFIVYIKDELLIVLGTSSSESVLPQ
                     MMGKMEGLGASKSVVGLVIPTGYSFNLDGTNIYMTLATLFLAQAVGAELSFGQYATII
                     AVAMLTSKGASGVTGAGFITLAATLAAIPNNPVPVAAMTLVLGIDKFMSECRALTNLV
                     GNGVATVVVSAWENELDRAQLAAALAHPVGAAEAVEAKPIEQAL"
BASE COUNT          751 a         1457 c         1464 g          643 t
ORIGIN      
        1 gcgggcgagg ggaagctccg ccatgtggcg gccctgctgc cgcacgccgc cgaaattgac
       61 gccgctggcg cctgccccgc acaggccctt ctcgaagagc acgacggaca tgcccgcggt
      121 gcgcagggcg accgcggcgg cgcagcccgc ggtgccgccg ccgattatgg ccacatcggc
      181 cgtgaggcgc tcggtcatgc gtcgcctccg agcaccggga tcggcttgat cggcggctgg
      241 gctcggagcc gcccgacgct ctcgattggg cagcctcgtg cgcgcgcgag gagctcggcg
      301 gcgacgtggc cacagacgcg tccctggcag cggcccatgc cgactcgggt gagcgccttg
      361 aggcggttca cctccggcgc gtcctggtcg cacgcggcgc ggcgcagggc gccagccgtg
      421 acgccctcgc agcgacacac gatttcgtca tcgccgacgt cgtcgaggag gtgcgtgggg
      481 aacgggtacg cggcttcgag tgcccggcgg aagccggcct gccgcttgag cgcacgatcg
      541 agatccccgg tctcgctggg ggcgacccga cgccccaggt cttcgagcac agcgagggcc
      601 gtgcggcgtc cctggagctc cgctatgtcg gcgccgccga tccgagcgcc gtctccggcg
      661 aggtagatgg caggcacgct cgaacgtcct tcctgcgtgg tttgcggccg ccattgccgt
      721 tcgacggcgt cgaacccgaa ggcgcagccg gcgaggtcgg cgagctgcgc ctcgctgcgc
      781 agcccgaacg acgctccgat gccgtcgcag gcgatgcggt gctccttgcc ggcccggtcg
      841 cgaaacacga gtgcctcaac ctgacgagcg ccctcggccc tgagggcctg gacgccgtaa
      901 cggacgttga gcccgcggag cttgttgcgc gcggtgtacc agaggccctt tgcgaacgtt
      961 gtgctctcgg tgagcaggcc gggcgcgtgc ctgaccttcg tgaggaaagg agtcgtgtcg
     1021 aggaccgcga ccacctcggc tcccgcggtg gcgtattggt ccgccacgag gggcaggagc
     1081 ggaccggcgc cgataagggc gacgcgccgg ccaatcgaga cgccctgcgc cttgaaggcg
     1141 atctgcgccg cgccgagggt gaacacgccg ggcagcgtcc accccgggaa gggcagcacc
     1201 cggtccatgg cgccggtggc gaggatcagg cggttgaagc gctgttcgcc gtagccctgg
     1261 accgtcagga ggtcgagcct gtcctggaac aggttccaga cgagggtgcg gggccggtaa
     1321 tcgacggcgt ccgcaaggtc gccgagcgtg cggtggatcg cgccagcctt gcgcgcttcg
     1381 aagccgtaga ccgtggtctg cgcgctgaca ccgccgggcg gctggcgata gatctgccca
     1441 ccgggccgct cggcctcgtc gaacaggatc ggccgaagcc ccgcccccgc cagcgtctgc
     1501 gccgcccgta cccccgccgg ccctgcgccg atgatgacga cgatcggatc agccatcgcg
     1561 gccctcctcc gtgaggaccg cgatgccgcg ctcgacggcg gtcgagcagg cgcgcacgcg
     1621 ccggccgtcg ccgagggaga cccagcagtc ctggcacgcc gccatgaagc agaatccggc
     1681 gcggtcggcg tcgccgaact cgaagcgccg cagggcaggg cggtgcagga ggatggccgt
     1741 catcaggagg tcgccttcgc gcgcctcgaa ggcgtccccg tcgatcgtga agggcacggt
     1801 cgctccggcg cccgcaaaca atctcgtgag cagccccggc acgtccctca gcccccgccg
     1861 tgttcagacg cggttgaccg cgcgtcggcg cgatccttac gacacggcgc agcgacagca
     1921 caggccccgg tcgcggcgag gaacagccac atgcaagtcg aagcgatcaa cgtctatctc
     1981 gtcacagcgg ggaagctcca ccccgtcatc gtcgagatca tcaccgatga gggcattacg
     2041 ggcatcggcg aagcggcgat cgcctacggg gttggcggca ccgcggcggc tgggatggtc
     2101 aaggacctct cggcccgcat cgtcgggcgg gatccctccc gcatcgagga gctgtggtcg
     2161 gagatgtacg atcactcatt ctgggcaaag ggcggcggcg ccatcgtttt cgcgggcatc
     2221 agcgccattg agcaggcgct gtgggacatc aaaggcaagg cactcggcgt ccccgtgtac
     2281 gagctcctgg gcgggaggat acgggatgag atccgggtct atgcgaacgg ctggtacggc
     2341 ccgtctcgca ccccggcgga gctggcgaac gccgctgagc ggccattgcg ggagggctac
     2401 aaggcgctga aatgctatcc cctggcgcag tgggacggtg ccggcttgcg acacgtcacg
     2461 aatcgccaag tcgatcgcag cttcgcaaac ctcgcattcg agaaggtgcg cacacttcgg
     2521 gaagcagtcg ggcccgaggt cgagctcatg ctcgacttga gtggcggcct caccactgac
     2581 gagaccatcc gcctgtgtcg gcgcttcgag gagctcgaca tcacctgggt cgaggagccg
     2641 gcagaccctt ttgacgtcgg ggcgctgaag aagatctccg ataaagtctc catcccggtc
     2701 gcggtcggcg aacgtctcta cacgcgccac gcctttcgca agatcttcga gcagcacgcg
     2761 gccgacatcg tgcagccgga cgtcggcaac accggcggca tcatggaagt caaaaagatt
     2821 gccgccatgg ccgaggccta caacatgcga gttgcgccgc acaattgcgc gacagcgctc
     2881 tcgacggccg cctcgctcca gatcgccgcc tgcatttcga acttcatgac gcaggagatc
     2941 tacccctatt tcccggaacg tcccggctac atccaagtcc tcgaagactc gccggaggag
     3001 cgcatcaagg atggcgtcgt cgcagtcccg accgcgccgg gccttggtgt ggcgctcgcg
     3061 gccgagcgac tgcacccctt cctgtgggcg aatgtccggt gctgacggcg agcgtaccct
     3121 atgggcgcaa agcggaacgg ccggtcttag ccgacagcgg aacgtccgct ttggagcgag
     3181 cacggcggaa agccgacctt cgaaacgcaa ggcccccgct acacgtcaga ccggcgccgg
     3241 cattggctga agatcgagaa ccccgggctg ggtgcaggcg ccagctgcct gctacatggc
     3301 tcgagcttaa gggagcggcc tcaccaggct attctgcctc tgaccgtagg ctagagggct
     3361 tgctcgatcg gcttcgcctc gacggcttcg gccgcgccga cgggatgagc cagagccgcc
     3421 gcgagctggg cacgatccag ctcgttctcc caggccgaga cgaccaccgt ggctacgccg
     3481 ttcccaacaa ggttcgtcag cgcccggcac tcgctcatga acttgtcaat gcccagcacc
     3541 agcgtcatag ccgcaaccgg aacggggttg ttcggaatcg cggccagcgt cgccgccaac
     3601 gtgatgaagc ccgcgccagt gacgccggag gcccccttcg aggtcagcat cgccaccgcg
     3661 ataatggtag cgtactgccc aaaggacagc tccgccccca ccgcctgggc tagaaacagg
     3721 gtcgccaatg tcatgtagat gttggtgccg tcgaggttga acgaataccc cgtcgggatt
     3781 acgaggccga ccactgactt cgaagcgcca agcccctcca tcttgcccat catctgcggg
     3841 agaacggatt ccgaggagga cgtgccgagt acgatcagga gctcgtcctt gatgtagacg
     3901 atgaagcgta agatcgagaa cccagcccac caggctatcg cgccgagcac gaccagcacg
     3961 aaaaggacgc tcgtcaagta gaacgtcagc accaggccca agagattgcc gaggcttccg
     4021 aggccgtact ggccgacagt gaaagccatc gccccgaagg ccccgattgg ggcgagcttc
     4081 accacaagcc cgatgatctt gaagaagatc tggcccatgg tctcgatagc gtagttgatc
     4141 tgctgcgttc gctcgccgag ctggagcacc accaccccgg tcaggactga gacgagcagg
     4201 acttggagga gatcgccgcc cgcgaaggcg tcgaagaaac tcttcggaat cagcgccagg
     4261 acgtgggcga cgaaggtgtc cttctcggcc gctgctgcgt agccagcgac ggcct
//
LOCUS       DASQWN010000016         4707 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_100682, whole genome shotgun sequence.
ACCESSION   DASQWN010000016 DASQWN010000000
VERSION     DASQWN010000016.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 4707)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4707)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4707
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_100682"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..403)
                     /locus_tag="VE686_00325"
     CDS             complement(<1..403)
                     /locus_tag="VE686_00325"
                     /EC_number="1.1.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009494521.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016616 - oxidoreductase activity, acting
                     on the CH-OH group of donors, NAD or NADP as acceptor
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidinol dehydrogenase"
                     /protein_id="HYY82927.1"
                     /translation="MPLRLDAREPAFARAFEALLAAKREVSQDVDETVRAIIADVSSR
                     GDEAVIDYTRRFDALELSPATLRVSAAEVDEAVARCTPEALEALAFAKNRIEVYHRAQ
                     RPNDALSTDAAGVTLGWRWTALESVGLYVPGG"
     gene            complement(403..837)
                     /locus_tag="VE686_00330"
     CDS             complement(403..837)
                     /locus_tag="VE686_00330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019906240.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2948 family protein"
                     /protein_id="HYY82928.1"
                     /translation="MDLLRLLALDQEDLAIVSAHLQDAVVRVGDIAYLPKERRFALLA
                     RRFDWEAPPNEPRRRLTGLHFERVLGARCRGLDRSNPDAVLNLLAITFDETQSPSGTA
                     TLLFSEGAAIQIDCECVESQMKDLGPVWEAEARPIHAEAESA"
     gene            966..1328
                     /locus_tag="VE686_00335"
     CDS             966..1328
                     /locus_tag="VE686_00335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015822558.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY82929.1"
                     /translation="MKRILLAALGAAALGLATTPASAQWGPPGGGYGGGYGGGGGYGG
                     GGYGRGYRDFDDDEEDERPRYRRGPGYGYGDGYGRRRFGAICVTGRGNCATGRPVPSG
                     SPCGCNIPGFGPKRGVVN"
     gene            complement(1359..2648)
                     /gene="murA"
                     /locus_tag="VE686_00340"
     CDS             complement(1359..2648)
                     /gene="murA"
                     /locus_tag="VE686_00340"
                     /EC_number="2.5.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018389167.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008760 - UDP-N-acetylglucosamine
                     1-carboxyvinyltransferase activity [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine
                     1-carboxyvinyltransferase"
                     /protein_id="HYY82930.1"
                     /translation="MDRIRIRGGAPLNGTIPISGAKNAALPLMIASLLTEDTLELVNV
                     PRLADISSLLRILSNHGVDHTIAGKRPGQTTETGQTIRLSAKTIIDTTAPYELVSTMR
                     ASFWVVAPLLARLGEAKVSMPGGCAIGTRPVDLLIMALERLGAQIEIDAGYVLAKAPR
                     GLKGGEIAFPKVTVGGTHVALMAAALADGTTVIENAAREPEVVDLAACLSKMGARIEG
                     AGSARIVVDGVPRLHGATHEVLPDRIETGTYAMAVAMTGGEVTLENTRPELLESALDV
                     LRQAGVEVSAVNEGIRIRRNGGGIAPVDVTTDPFPGFPTDLQAQFMALMTRAAGTSRI
                     RETIFENRFMHVQELARLGAKIRLDGDSAYVDGVDRLRGAPVMATDLRASVSLVIAGL
                     VADGETTINRVYHLDRGFEALESKLARCGAEIERIRG"
     gene            complement(2700..2867)
                     /locus_tag="VE686_00345"
     CDS             complement(2700..2867)
                     /locus_tag="VE686_00345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017485343.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY82931.1"
                     /translation="MTDVKTKDSRAERLKAALRENLKRRKAQARGRESATESGEDEPS
                     GPPLPPKEPAE"
     gene            3049..4275
                     /gene="hemA"
                     /locus_tag="VE686_00350"
     CDS             3049..4275
                     /gene="hemA"
                     /locus_tag="VE686_00350"
                     /EC_number="2.3.1.37"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018389133.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003870 - 5-aminolevulinate synthase
                     activity [Evidence IEA];
                     GO_process: GO:0006783 - heme biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="5-aminolevulinate synthase"
                     /protein_id="HYY82932.1"
                     /translation="MDYERFFTAALDQLRSERRYRVFADIERVAGRFPAALWHRPEGT
                     REITVWCSNDYLGMGQHPAVIEAMADTARRLGTGAGGTRNISGNNHPVVELEAELAEL
                     HGKDRALVFTSGYVSNQAGISTIARLIPNCLILSDALNHNSMIEGVRQAGCDKAIFRH
                     NDLAHLEELLIAAGERPKLIVFESVYSMDGDVAPIHAICDLAERHSAMTYLDEVHAVG
                     MYGPRGGGIAERDGAMDRVDVIEGTLAKAFGVMGGYIAASAAVVDAVRSFAHGFIFTT
                     ALPPGVAAAATASVRHLKTSSGERDAQQRQAAKTKAALSRAGLPVADTPTHIVPVLVG
                     DAEACKAASDRLLEVHGVYIQPINYPTVPRGSERLRITPGPLHTDAHIAALTEALLEV
                     WQALGLRRAEYAQAAE"
     gene            4381..>4707
                     /locus_tag="VE686_00355"
     CDS             4381..>4707
                     /locus_tag="VE686_00355"
                     /inference="COORDINATES: protein motif:HMM:NF015652.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MHYT domain-containing protein"
                     /protein_id="HYY82933.1"
                     /translation="MHVVHDPSLVALSVLAAMLAAFAALSLAGRLVSADKEARRWWLA
                     ASAAALGGGIWSMHFLGMLALKMPVHAEYDVRLTVLSLVMAVVVTWAGLFTVSRFGGG
                     WRTTAAS"
BASE COUNT          668 a         1624 c         1663 g          752 t
ORIGIN      
        1 ttccgcccgg gacgtagagg ccgacggatt cgagcgcagt ccagcgccag cccagggtca
       61 cgcccgcagc gtcggtcgag agcgcatcgt tcgggcgctg cgcgcggtgg tagacctcga
      121 tgcggttctt ggcgaaggca agcgcctcga gcgcctccgg cgtgcagcgc gcgacggcct
      181 cgtccacctc ggcggcgctc accctcaggg tggcgggcga caactcgagc gcgtcgaagc
      241 ggcgggtgta gtcgatgacg gcttcgtcgc cgcggcttga tacgtcggcg atgatcgctc
      301 gcacggtctc gtcgacgtcc tgcgacacct cgcgcttggc cgcgaggagc gcctcgaagg
      361 cgcgcgcgaa cgcgggctcg cgcgcgtcga ggcgcagggg catcaggcgc tctccgcctc
      421 ggcgtggatc gggcgcgcct cggcttccca aacgggccct agatccttca tctggctctc
      481 gacgcactcg caatcgatct ggatcgcggc gccttcggag aagaggaggg tcgcggtgcc
      541 cgagggcgac tgcgtctcat cgaacgtgat ggcgaggagg ttgagcaccg cgtcggggtt
      601 cgagcggtcg agcccacggc agcgggcgcc gagcacccgc tcgaagtgca accccgtgag
      661 gcgccggcgc ggctcgttcg ggggcgcctc ccagtcgaaa cgccgggcga ggagcgcgaa
      721 ccggcgctcc ttcggcagat acgcaatgtc gccgacgcgc acgaccgcat cctgcaggtg
      781 ggccgagacg atggcgaggt cttcctggtc gagcgcgagg agccgcagga gatccatggc
      841 aatggccgat ccgttgatgt gaccggtagg tagctacgcc cccgggagtg cgcaaccttt
      901 gccgtcagcg catgttcatc tcgatgcggg tatcgtttgc gtcgacaggt tgagggagaa
      961 cgatgatgaa gcgcattctt ttggctgcct tgggcgccgc agcactggga ctggcgacca
     1021 cgccagcgtc cgcgcaatgg ggccctcccg gcggcggcta cggcgggggc tatggcggcg
     1081 ggggcggata tggcggcggc ggatacggcc gcggctatcg cgacttcgac gacgacgagg
     1141 aggacgagcg cccgcgatac cgccgcggcc cgggctacgg gtatggcgac ggctacggcc
     1201 ggcggcgctt cggagcgatc tgcgtcacag ggcgcggcaa ctgcgccacc gggcgcccgg
     1261 taccgtctgg aagcccctgc ggctgcaaca tcccgggctt cgggccgaag cgcggcgtcg
     1321 tcaactgacg accgggggcg ggcaagcccg cccccgcctc acccgcggat gcgttcgatc
     1381 tcggctccac agcgcgccag cttcgactcg agcgcctcga agccgcggtc gagatggtag
     1441 acgcggttga tggtggtctc gccgtccgcg acgaggccgg caataacgag ggacactgag
     1501 gccctcaaat ccgtcgccat gaccggcgcg ccgcgtaggc ggtcgacgcc gtcaacgtag
     1561 gcgctgtcac cgtcgagacg gatcttggcg ccgaggcgcg cgagctcctg cacgtgcatg
     1621 aagcggttct cgaagatggt ctcgcggatg cgggacgtcc cagcagcgcg cgtcatcagg
     1681 gccatgaact gcgcctgcag gtcggtcgga aagcccggga aggggtccgt ggttacgtcc
     1741 acgggtgcga tgccgccgcc gtttcggcgg atgcggatgc cctcgttgac ggcggagacc
     1801 tcgacccctg cctgcctgag cacgtcgagc gcgctctcca ggagctccgg ccgcgtgttc
     1861 tcgagggtaa cctcgccccc cgtcatggcc accgccatgg cgtaggtccc ggtctcgatc
     1921 ctgtcaggca ggacctcgtg cgtggcgcca tggaggcgcg gcacgccatc gactacgatg
     1981 cgggcggatc cggcgccctc gatcctggcc cccatcttgg acaggcaggc ggcaaggtcg
     2041 acgacctcgg gctcccgcgc ggcgttctcg atgacggtcg tgccgtcggc aagtgcggcc
     2101 gccatcaggg cgacgtgcgt gcccccgacc gtgaccttcg gaaaggcgat ctcgccaccc
     2161 ttcagtcctc gaggcgcctt ggccagcacg tagccggcgt cgatctcgat ctgcgccccg
     2221 agacgctcga gggccatgat gaggagatcg accgggcgcg taccgatggc gcacccgccc
     2281 ggcatcgaaa ccttggcctc gccgaggcgc gccagcagcg gcgcgacgac ccagaagctc
     2341 gcccgcatgg tggagacgag ctcgtagggc gcggtcgtgt cgatgatggt cttcgccgag
     2401 agccggatgg tctgccccgt ctcggtggtc tggcccgggc gcttgcccgc aatggtgtgg
     2461 tcgacgccgt ggttcgacag gatgcgcagc agcgacgaga tgtcggcgag ccgcggcacg
     2521 ttgacgagct cgagcgtgtc ctcagtcaag aggctcgcga tcatcagcgg cagtgccgcg
     2581 ttcttggccc cggagatcgg gatcgtgccg ttgagcgggg cgccgccccg gatgcgaatg
     2641 cggtccatca agtcctcgtc gcgttgcggc tcgtgccgca gcctcagcgg cggggggcct
     2701 tattcggccg gctccttcgg gggaaggggt ggcccgcttg gttcgtcctc gcccgattcc
     2761 gtggcggatt cacggccgcg cgcctgcgcc ttgcggcgct tgaggttctc gcgcagggcc
     2821 gccttgagcc gctccgcccg gctgtccttc gtcttgacgt cggtcatgtt tcacgcgacc
     2881 catggtcgcc gcgatcacat aagggcttcg catccggggc tcaacggccg ataacgtctt
     2941 ttcgtaacgg cctatcgaca aggctgcggg cgtccggcag cggggaccat ctggcgcctt
     3001 gttccgccgg gcgcgtgttt ttgcgtcctc atctcccggt gagacctcat ggactacgag
     3061 cgtttcttca ctgccgccct cgaccagctg aggagcgagc gccgctaccg cgtgttcgcc
     3121 gacatcgagc gcgtcgccgg ccggttcccg gcggccctgt ggcatcggcc ggaaggcacc
     3181 cgcgagatca ccgtttggtg ctcgaacgac taccttggca tgggccagca ccccgccgtc
     3241 atcgaggcga tggccgacac ggcgcgccgc ctcggcaccg gcgccggcgg cacgcgcaac
     3301 atctcgggca acaatcatcc cgtggtcgag ctcgaggccg agctcgccga gctgcacggc
     3361 aaggaccgcg cccttgtctt cacctccggc tatgtgtcga accaggccgg catctcgacg
     3421 atcgcgcgcc tgatcccgaa ctgccttatc ctgtcggacg ccctgaacca caactcgatg
     3481 atcgaggggg tgcgccaggc cggctgcgac aaggcgattt tccgccacaa cgacctcgct
     3541 catctcgagg aacttctgat cgcggcgggc gagcggccga agctgatcgt gttcgagagc
     3601 gtctactcga tggacggcga cgtcgctccg atccacgcga tctgcgacct cgccgagcgc
     3661 cacagtgcca tgacctacct cgacgaagtg cacgcggtcg gcatgtacgg gccacgcggc
     3721 ggcggcattg ccgagcgcga cggcgccatg gaccgggtcg acgtcatcga gggcaccctc
     3781 gccaaggcct tcggcgtgat gggcggctac atcgcggcct cggccgccgt ggtggatgcg
     3841 gtgcgcagct tcgcgcacgg cttcatcttc accactgccc tgccccccgg cgtggccgcg
     3901 gccgcgaccg cgtcggtgcg gcacctgaag acctcctcgg gcgagcgcga tgcgcagcag
     3961 cgccaggccg ccaagaccaa ggccgccctc tcccgggccg ggctgcccgt cgccgatacg
     4021 ccgacgcaca tcgtgccggt gctcgtcggc gacgccgagg cctgcaaggc ggcaagcgac
     4081 cgcctgctcg aggtgcacgg cgtctacatc cagccgatca actacccgac cgtgccgcgc
     4141 gggagcgagc gccttcgcat caccccgggc cccctgcaca cggacgccca tattgcggcg
     4201 ctgacggaag cgctgctcga ggtgtggcag gcgctcgggc tgcgccgggc ggagtacgca
     4261 caggcggcgg aatagcggcc ccggcccgct cgcagccgcc gctcggcccg ggttcgacag
     4321 cgggcatttc gccgttcggc tttagcgcga cgttcagggt tcccggatag gtttgcgtgg
     4381 atgcacgtcg tccacgaccc ctccctcgtc gccctctcgg tgctggcggc gatgctcgcg
     4441 gcatttgccg cgctctccct ggcggggcgc ctcgtgtcag ccgacaaaga ggcccggcgg
     4501 tggtggctcg ccgcgtcggc tgccgccctg ggaggtggca tctggtcgat gcacttcctc
     4561 ggcatgctgg cgctgaagat gccggtgcac gccgaatacg acgtgcgcct tacggtcctg
     4621 tccctcgtaa tggcggtcgt tgttacctgg gcgggcctgt tcaccgtgag ccgcttcgga
     4681 ggcggttggc gcacgacggc ggccagc
//
LOCUS       DASQWN010000017         2019 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1094440, whole genome shotgun sequence.
ACCESSION   DASQWN010000017 DASQWN010000000
VERSION     DASQWN010000017.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2019)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2019)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2019
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1094440"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..792)
                     /locus_tag="VE686_00360"
     CDS             complement(<1..792)
                     /locus_tag="VE686_00360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009763993.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HYY82934.1"
                     /translation="MRLTEAFRSALSAIGANALRSLLTMLGIVIGVAAVIAMVAIGSG
                     ARNLVDKQIRSLGANLAIVTPGNVTQGGARLGAGAASTLTDEDAASIKREIDGVTAAA
                     PFVRGNAQAVAGGANWGTTVYGVDNDYFAAREWDVETGRGFDPDEIRRGEIVALLGRT
                     VAKNLFGEADPTDQTIRVRNVPFKVVGVMGPKGQSAFGQDQDDVIFVPLDAGRRRVIG
                     RNYAKDRSVGSIFIKFEKEEDIVPGIEHVTALLRQRHRTGEQEDDF"
     gene            complement(789..1532)
                     /locus_tag="VE686_00365"
     CDS             complement(789..1532)
                     /locus_tag="VE686_00365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009763994.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HYY82935.1"
                     /translation="MALIEARDLSRVYELDGGRVVALDRVSLDIDDGDFVAVMGPSGS
                     GKSTFMNLVGCLDRPTMGSYRLAGAAVETLNANGLAALRNREIGFVFQQFNLLPRTDA
                     LGNVELPMIYAGVERRARHARAMSALERVGLADRAHHRPTQLSGGQQQRVAIARALVN
                     NPSLLLADEPTGALDSRTAIEILALFQELNREGSTIVLVTHDADVARHARRVVRFRDG
                     HVISDERQAPRDARDALEADQAPAEEALA"
     gene            complement(1543..>2019)
                     /locus_tag="VE686_00370"
     CDS             complement(1543..>2019)
                     /locus_tag="VE686_00370"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY82936.1"
                     /translation="RSFEAMRERIVAEVQPTPEQSAAIARILAEGRGAMPGREPGLTD
                     EDRRAAFRQFRQEMQAKIAAVLDPERRAKYLAMSEARGPRAADGGAPGRVFVLDGEGR
                     PQGLALRIGATDGSYTEVLTGDLKEGTGVIVGGGPRAQGTAQETSPMQRPRGPRLF"
BASE COUNT          281 a          721 c          704 g          313 t
ORIGIN      
        1 gaaatcgtcc tcctgctcgc cggtgcggtg gcgctgccgc aggagggccg tgacgtgctc
       61 gatccccggc acgatgtcct cctccttttc gaacttgatg aagatcgacc cgacggagcg
      121 gtccttggcg tagttgcgcc cgatcacccg tcgccgcccc gcatcgaggg gcacgaagat
      181 gacatcgtcc tggtcctgcc cgaacgccga ctggcctttc ggccccatga caccgacgac
      241 cttgaagggc acgttgcgca cgcggatggt ctggtccgtc gggtccgctt cgccgaacag
      301 gttcttcgcg accgtgcggc cgagaagcgc cacgatctcg ccgcggcgga tctcgtcggg
      361 atcgaagccg cgccctgtct cgacgtccca ttcccgcgcc gcgaagtagt cgttgtcgac
      421 gccgtagacg gtcgtgcccc agttcgcgcc acccgccacc gcctgggcgt tgccccgcac
      481 gaaaggcgcg gccgcggtga cgccgtcgat ctcgcgcttg atcgacgcgg catcctcgtc
      541 ggtcaacgtc gaggccgctc ccgccccaag cctggcgccg ccctgcgtga cgttgccggg
      601 cgtgacgatg gcgagattgg cgccaagcga tcggatctgc ttgtcgacga ggttgcgggc
      661 gccggagccg atcgccacca tggcgatgac ggccgcgacc ccgatgacga tgccgagcat
      721 tgtcaggagg ctacgcagcg cattggcacc gatggccgag agcgccgagc ggaaagcttc
      781 cgtcagcctc acgcgagagc ctcctcggcg ggcgcctggt cggcctcgag cgcgtcccgc
      841 gcgtcgcggg gcgcctgcct ctcgtcgctg atgacgtggc cgtccctgaa gcgcaccacg
      901 cgccgggcgt ggcgcgccac gtcggcgtca tgggtgacga gcacaatcgt gctgccctcg
      961 cggttcaact cctggaacaa ggccaggatc tcgattgcgg tgcggctgtc gagggcgccc
     1021 gtgggctcgt cggcgagcag caggcttgga ttgttgacga gcgcacgggc gatcgccacg
     1081 cgctgctgct gaccgccgga cagctgcgtc gggcggtgat gggcccggtc ggcaaggccg
     1141 acccgctcga gcgccgacat ggcgcgcgcg tgacgggccc ggcgctccac gccggcgtag
     1201 atcatgggca gctcgacgtt cccgagggca tcggtccgcg ggagcagatt gaactgctgg
     1261 aagacgaagc cgatctcgcg attgcgcagc gccgccaagc cattggcgtt cagggtctcg
     1321 acggcagcgc cggccagccg gtaactgccc atggtcggcc ggtcgagaca gccgacgagg
     1381 ttcatgaacg tcgacttgcc ggaacccgac ggtcccatga ctgcgacgaa gtccccgtcg
     1441 tcgatatcga gggagacgcg gtcgagggcc acgacccgcc cgccgtcgag ctcgtacaca
     1501 cggctcaagt cccgggcttc gatgagcgcc acgcgccgcg cctcagaaca gccgcggccc
     1561 gcggggccgc tgcatcggcg aggtctcctg ggctgtgcct tgcgcgcgag gcccgcctcc
     1621 gacgatcacg cccgtgccct ccttgaggtc gcccgtcaga acctcggtgt agctcccgtc
     1681 ggtggctccg atgcgcagag ccagaccttg cggccgtccc tcgccgtcga ggacgaagac
     1741 acggccggga gcgccgccgt cggctgcgcg cggcccgcgc gcctcgctca tggcgaggta
     1801 tttcgcccgg cgctcggggt cgaggacggc ggcgatcttc gcctgcatct cctggcggaa
     1861 ttggcggaac gcggcccggc ggtcctcgtc cgtcagtcca ggctcccgcc cgggcatggc
     1921 gccgcggccc tcggccagga tgcgcgcgat ggccgcgctc tgctccggcg tgggttgaac
     1981 ctccgcgacg atgcgctcgc gcatggcttc gaaggaccg
//
LOCUS       DASQWN010000018         3396 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_398415, whole genome shotgun sequence.
ACCESSION   DASQWN010000018 DASQWN010000000
VERSION     DASQWN010000018.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 3396)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3396)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3396
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_398415"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1029)
                     /locus_tag="VE686_00375"
     CDS             complement(<1..1029)
                     /locus_tag="VE686_00375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002715936.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0031317 - tripartite ATP-independent
                     periplasmic transporter complex [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0008643 - carbohydrate transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TRAP transporter large permease"
                     /protein_id="HYY82937.1"
                     /translation="MSPAAQGGLVLVVTVLAFMTGAPVAFALGAVGIGFLVLFQGFDS
                     LRVAAETLYSGLHDFTLVSIPMFVMMGAAIGSSPAGRDLYIALDRWLYRVPGGLVISN
                     LGACALFAALTGSSPATCAAIGKMGIPEMRRRGYPDAVATGSICAGGTLGILIPPSIT
                     FILYGIATETSIGRLFLAGVLPGLLLTALFMLWTLFYIWRSGFRAYAPDFRYSWKEKF
                     QSIPKVAPFLLIVIGVMYVLYGGVATPSEAAGVGAALCVILAVIIYRMWQARDWWQIL
                     RDTTRESVMILMIIAAAVLFGYMLTSLYLTQTLATAIADMHVNRWVLMALINVFLLVC
                     GFFIPPAAI"
     gene            complement(1026..1568)
                     /locus_tag="VE686_00380"
     CDS             complement(1026..1568)
                     /locus_tag="VE686_00380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002715935.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0031317 - tripartite ATP-independent
                     periplasmic transporter complex [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0015740 - C4-dicarboxylate transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TRAP transporter small permease"
                     /protein_id="HYY82938.1"
                     /translation="MDHFIRGVRLLSQACGIVAAALTALAVAVVCQMVFIRSVLNETT
                     IWQTDFVTFGLVAATFIGAPYVLLTKGHVNVDVLPLYSGPRARWWLALIAILISLAFA
                     LTMAVLTFQFWHEAWENNWRSESMWRARLWIPYAAMPVGLGVLALQYVVDLLNLVTGR
                     EPPFGMDPNAHTVALKEAGI"
     gene            complement(1632..2630)
                     /gene="dctP"
                     /locus_tag="VE686_00385"
     CDS             complement(1632..2630)
                     /gene="dctP"
                     /locus_tag="VE686_00385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009451143.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TRAP transporter substrate-binding protein DctP"
                     /protein_id="HYY82939.1"
                     /translation="MRSPRSVLAAATALAVLGGSAAYAQTVLKASHQFPGGKGDPRDE
                     MVQIIAREVKAANVGLEMQVYPGASLFKPNDQWNAIVNGQLDLTSFPLDYASGKVGAF
                     SATLMPGLVRNHERAARLNQSDFMKEIKAKIDKAGAVVLADAWLAGAVASKKACIRKP
                     DDIKGQKIRSAGPTFAAMWQQAGASIVNIPSNEVYNALQTGVAEGTDTSTGSFVSFRL
                     YEQVKCVTAPGENALWFMYEPVLMSKRSFGRLNKQQQDALIAAGKKSEAYFNEASKKL
                     DDEMVETFKKNNVEVVTLTEDEYAAWLKIAQESSYKQFASEVSDGKKLIDAALAVK"
     gene            2938..>3396
                     /locus_tag="VE686_00390"
     CDS             2938..>3396
                     /locus_tag="VE686_00390"
                     /inference="COORDINATES: protein motif:HMM:NF013866.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dienelactone hydrolase family protein"
                     /protein_id="HYY82940.1"
                     /translation="MRLKTWVAAVAAVVAMQVTGTALGSGLERQESFNSGNKTIGVEW
                     FEAAGAAEKAPAIVMLHGADGLTRADRYREGARRIAAGGYHVALVHYLDRTGEKRASF
                     GTIMRNFDPWLATVRDSVTWIARRPGVDPHRIGIVGISLGGTLGLAAAGHD"
BASE COUNT          612 a         1106 c         1152 g          526 t
ORIGIN      
        1 gatcgccgcc ggcgggatga aaaagccgca caccagaagg aagacgttga tcagcgccat
       61 cagcacccag cggttgacgt gcatgtcggc gatcgccgtg gcgagcgtct gggtgagata
      121 gagcgaggtc agcatgtagc cgaacagcac cgccgcagcg atgatcatca ggatcatgac
      181 cgactcgcga gtggtgtcgc gcaggatctg ccaccagtcg cgggcctgcc acatccggta
      241 gatgatcacg gcgaggatga cgcagagggc cgcgccgacg ccggctgcct ccgatggcgt
      301 cgccacgccg ccgtagagca cgtacatgac gccgatgacg ataagaagga acggcgccac
      361 tttggggatc gactggaact tctccttcca cgagtagcgg aagtcgggcg cgtaggcgcg
      421 aaagccgctg cgccagatgt agaacagcgt ccacagcatg aagagcgccg tcaggagaag
      481 gccgggcagc acgccggcca ggaacaagcg cccgatcgag gtctcggtgg cgatgccgta
      541 gaggatgaag gtgatggacg gcgggatgag gatgccgagc gtgccgccgg cgcagatcga
      601 gccggtggcg accgcgtccg ggtagccgcg ccggcgcatc tccgggatgc ccatcttgcc
      661 gatggcggcg caggtcgcgg gcgacgatcc cgtcagggcg gcgaacaggg cgcaggcgcc
      721 gaggttcgag atcacgagcc cgccgggcac gcgatagagc cagcggtcga gggcgatgta
      781 gaggtcgcgc cccgccggcg acgagccgat ggccgcaccc atcatgacga acatcggaat
      841 cgacacgagg gtgaaatcgt gcaggccgga gtacagcgtt tccgccgcca ccctcaagga
      901 atcgaagccc tggaacagca caaggaagcc gattccgacg gccccgagcg caaacgcaac
      961 cggcgccccc gtcatgaagg cgaggaccgt cacgacgagg accaggccgc cttgggctgc
     1021 gggactcata tgccggcctc cttcagagcc accgtatggg cgttcgggtc catcccgaag
     1081 ggcggctccc gacccgtcac gaggttcaga aggtcgacga cgtactgcag cgcgagcacg
     1141 ccgagcccga ccggcatggc cgcgtaggga atccagaggc gggcgcgcca catggattcg
     1201 gagcgccagt tgttctccca cgcctcgtgc cagaactgga aggtcagcac cgccatcgtc
     1261 aacgcgaagg cgagcgagat taggatcgcg atgagggcga gccaccagcg cgcccgcggc
     1321 ccggaataga gcggaagcac gtcgacgttc acgtggccct tggtgaggag gacgtagggc
     1381 gcgccgatga acgtggcggc gacgagcccg aaggtcacga agtccgtctg ccagatcgtc
     1441 gtctcgttca gaacggagcg gatgaagacc atctggcaga ccaccgcgac cgcgagggcg
     1501 gtgagcgcag ccgcgacgat cccgcaggcc tgcgagagca gtcgtacgcc tcgtatgaag
     1561 tggtccatgt ctcgccgcga cctccgctga ggacgatcgg ccggcacgaa ccggccgatc
     1621 gccaagggcg actacttcac cgcgagcgcg gcgtcgatca gcttcttgcc gtccgagacc
     1681 tcgctggcga actgcttata cgagctctcc tgcgcgatct tcagccaggc cgcgtactcg
     1741 tcctccgtca gcgtcaccac ctcgacgttg ttcttcttga acgtctcgac catctcgtcg
     1801 tcgagcttct tcgaagcctc gttgaagtac gcctccgact tcttgcccgc tgcgatgagt
     1861 gcatcctgct gctgcttgtt gaggcggccg aagcttcgct tcgacatgag caccggctcg
     1921 tacatgaacc acaaggcgtt ctcgccgggc gccgtcacgc acttcacctg ctcgtagagc
     1981 cggaacgaga cgaagctgcc ggtgctggtg tcggtccctt cggcgacccc ggtctgaagc
     2041 gcgttgtaga cctcgttcga cggaatattg acgatcgatg cgcccgcctg ctgccacatg
     2101 gccgcgaagg tcggccccgc agagcggatc ttctgcccct tgatatcgtc gggcttgcgg
     2161 atgcaagcct tcttggaagc gaccgcgccg gcgagccagg cgtcggcgag cacgacggcg
     2221 ccggccttgt cgatcttggc cttgatctcc ttcatgaaat ccgactggtt caggcgcgcg
     2281 gcccgttcat ggttgcggac gagaccgggc atcagcgtgg cactgaacgc gccgaccttg
     2341 ccggaggcgt agtcgagcgg gaacgatgta aggtcgagct gcccgttgac gatcgcgttc
     2401 cactggtcgt tcggcttgaa cagggaggct ccgggataga cttgcatctc gagcccgacg
     2461 ttcgcggctt tcacctcacg ggcgatgatc tggaccatct cgtcccgagg gtcgcccttg
     2521 ccgcccggaa actggtgcga cgccttcagg acggtttgcg cgtaagcggc cgagccgccc
     2581 agcacggcta gagccgtggc ggcggcgagg acagacctag gagagcgcat cggatttcct
     2641 ccacttcgtt ttgctttggc aagcttgggc cgccactcgc gcgcaaggcg cgggaaacga
     2701 ccgaacgccc tcgaatagcg ctccccgagg ccccagcata gggccttgcc cccgcaggag
     2761 cccctcgggc ctccctaagc cggccgccca tgcggcgtac cgaagcagcg tcttgcgcgc
     2821 gctttccttc gtgccgagat cgggcgacca ttccctcgac agcgagattc gcggcggccg
     2881 ggccctgagc ctgtgccgac ccgaacgcct gcaagaggcg gcgaaggggg atcttcgatg
     2941 cggctcaaga catgggtcgc cgctgttgcg gcggttgtgg cgatgcaagt gacgggaacc
     3001 gcgttgggct ccgggctcga gcggcaggag agcttcaact ccggcaataa gaccatcggg
     3061 gtggagtggt tcgaggcggc gggagccgcc gagaaggcgc ccgccatcgt gatgttgcac
     3121 ggggccgacg gcctcacccg ggccgatcgc taccgcgaag gcgcgcgtcg catcgcggcc
     3181 ggcggctacc acgtggccct cgtgcactac ctcgaccgca cgggcgagaa gcgcgcgtcg
     3241 ttcggcacca tcatgcgcaa tttcgacccg tggctcgcca ccgtgcgcga ttcggtgacc
     3301 tggatcgcgc gccgccccgg ggtcgatccg caccggatcg gcatcgtcgg catctcgctt
     3361 ggaggcaccc tcgggcttgc ggccgcaggc catgac
//
LOCUS       DASQWN010000019         2017 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1193989, whole genome shotgun sequence.
ACCESSION   DASQWN010000019 DASQWN010000000
VERSION     DASQWN010000019.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2017)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2017)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2017
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1193989"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..289
                     /locus_tag="VE686_00395"
     CDS             <1..289
                     /locus_tag="VE686_00395"
                     /inference="COORDINATES: protein motif:HMM:NF012348.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="type III glutamate--ammonia ligase"
                     /protein_id="HYY82941.1"
                     /translation="AVALASAMDGIQRGEEPPLASDENLVRPEDAELNRLGVPTLPQT
                     LGDALAALAEDDLVREALGDYVCDQFLLVKRNEWSDYRRYVSPWERERYGE"
     gene            338..2002
                     /locus_tag="VE686_00400"
     CDS             338..2002
                     /locus_tag="VE686_00400"
                     /inference="COORDINATES: protein motif:HMM:NF037653.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HYY82942.1"
                     /translation="MITVEDVITLALPPGTTVAAGAAGLGREVTWAARIRSSPPAFGH
                     LAGGELVLLPVAILAELDERLQLDEAIRRLAELGVAGAAVLGTIGKPAREAAEAAGLP
                     LLALPKGADVGALERDAARLISERRRAVQHRGQEVLRQLMDLAIAGEPLGDVVQELAR
                     ISGRPVALEGRDGRLLAYHAVGKAAPSREMIESIVQRDRPVVARWLRTTAEASPADPP
                     TASYELDSAWSRLVAPVIGRDGLLGSVSLIAPRGSATPEDAQVTARGAADCAVVLARE
                     QAAATVRREVELDVLDEVLDGALRSEATLLQQAKRLGHDLLTSHVAVIARIDSTAVGP
                     VRAGGSEERWEGLEASIERIGTTRSGRVLWRIRNNSAEFVLPAADVGQERGLGLTLRD
                     ELVGLVRSGGESAISVGVGTTREGIAGIRRSHAEARQALLLGRRMQGPGHLTLFGDLG
                     VYRLIFAAEGLPELSDLYAQSLGELLAYDRQNNGDLISTLDAFFAANGSPKEAAERLG
                     VHRNTVLYRLDRIRDITGYDLDDAGLRLRLQLALHIHLALGESLAT"
BASE COUNT          325 a          627 c          747 g          318 t
ORIGIN      
        1 tgccgtggcg ctggcgagtg cgatggacgg gatacagcgg ggggaagagc cgccgttggc
       61 ctcggacgag aatctggtcc gtcccgagga tgctgagctg aaccgtctgg gagtgccgac
      121 gctgccgcag acgctcggcg atgctctcgc ggcgctggcc gaggacgatc tcgtgcgcga
      181 ggcgttgggc gactacgttt gcgatcagtt cctgctggtc aagcgtaacg aatggagcga
      241 ctaccggcgc tacgtcagcc catgggaacg ggaacgctac ggtgaatgag acgaccgccc
      301 gcagccagac tccgggcgga gccaggcaaa gccgggaatg atcaccgtcg aagacgtcat
      361 cacgctggca ttgccgccgg ggacgaccgt cgccgctggg gccgccgggc tcgggcgcga
      421 ggtgacctgg gccgcgcgca tccgctccag cccgccggcg tttggacacc tggccggcgg
      481 tgagctggtg ctcctaccgg tggcgatcct ggccgaactt gacgagcggc tacagctgga
      541 cgaggccatt cgccggctgg ccgagctggg agtagctggg gcggccgtcc tgggcacgat
      601 tggcaaaccg gcgcgggaag ccgcggaagc cgccggtctg ccgttgcttg cccttcccaa
      661 aggggcagac gttggagcgc tggagcggga tgcggcgcgg ctgatcagtg agcgccggcg
      721 agcggtgcag caccgaggcc aggaggtgtt gcggcagctg atggacctgg ccattgcggg
      781 cgagccgctc ggtgacgtcg tgcaggaact ggcgcgcatt agcggccggc cggtggcgct
      841 ggaaggccgc gacggccgcc tgctcgccta tcacgcggtc ggcaaggcgg cgccgagtcg
      901 tgagatgatc gagtcgatcg tgcagcgcga ccgccccgtc gtggcgcgct ggttacgcac
      961 aacggccgaa gctagtcccg ccgacccgcc gaccgcgagc tacgagctcg acagcgcctg
     1021 gtcgcggctg gtggcaccgg tcattggtcg cgatgggctg ctcggcagcg tttccctgat
     1081 cgcgcctcgc ggcagcgcga cgccggagga tgcgcaggtc accgctcgcg gtgccgcgga
     1141 ctgtgccgtg gtgctggcgc gagaacaggc cgcggcgaca gtgcgtcgcg aagtcgagct
     1201 cgacgtgctc gacgaggtac tggacggcgc cctgcgcagt gaagcgacgc tcttgcagca
     1261 ggcgaagcga ctcgggcacg acctactcac atcgcatgtg gccgtcatcg cccggatcga
     1321 cagcaccgcc gtcgggccag ttcgcgcagg cggtagcgaa gagcgctggg agggactgga
     1381 ggcgtccatc gagcgcatcg gaacgacccg gagtggccgg gtgctatggc gcatccgtaa
     1441 caacagcgct gagttcgtgc tcccggcagc cgatgtcggt caggagcggg gattagggct
     1501 gacgctgcga gatgagctgg tgggactggt acgctcgggc ggagaaagcg cgatctcggt
     1561 cggggtaggc acaacccggg aaggtatcgc cggaatccgg cgctcgcatg ccgaggcgcg
     1621 ccaggcgctg ctgctcggac gtcgcatgca gggacctggg cacctgacgc tgtttggcga
     1681 tcttggcgtc tatcgactga tcttcgctgc cgaagggtta ccggagttga gcgacctcta
     1741 cgcgcaatct cttggcgaac tgcttgccta tgaccggcag aacaatggcg atctgatcag
     1801 caccctggac gcgttcttcg cggcgaacgg aagcccgaag gaagcggcgg agcggctcgg
     1861 tgtgcatcgc aacaccgtgc tctaccgtct cgaccgcatc cgtgatatca ccggttatga
     1921 cctcgatgat gcgggtctgc gtctgcgttt gcaactcgcg ctgcacattc atctcgcgct
     1981 cggggaaagc ctcgccacct gatctggcgc cggcccg
//
LOCUS       DASQWN010000020         2210 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1094876, whole genome shotgun sequence.
ACCESSION   DASQWN010000020 DASQWN010000000
VERSION     DASQWN010000020.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2210)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2210)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2210
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1094876"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..196
                     /locus_tag="VE686_00405"
     CDS             <1..196
                     /locus_tag="VE686_00405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018899988.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016746 - acyltransferase activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="2-oxo acid dehydrogenase subunit E2"
                     /protein_id="HYY82943.1"
                     /translation="PPHSTILAVGTGEQRPVVRDGQLAVATVMSLTLSCDHRAVDGAL
                     GAKLISALKELIENPMGMLV"
     gene            331..1773
                     /gene="lpdA"
                     /locus_tag="VE686_00410"
     CDS             331..1773
                     /gene="lpdA"
                     /locus_tag="VE686_00410"
                     /EC_number="1.8.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012254145.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004148 - dihydrolipoyl dehydrogenase
                     activity [Evidence IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA];
                     GO_process: GO:0045454 - cell redox homeostasis [Evidence
                     IEA];
                     GO_process: GO:0051068 - dihydrolipoamide metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrolipoyl dehydrogenase"
                     /protein_id="HYY82944.1"
                     /translation="MADQYDIIVIGAGPGGYVTAIRAAQLGFRTAVVDREHLGGICLN
                     WGCIPTKALLRSAEIFHYLQHPKEYGLTVEGKVGFDAAAIVKRSRDVSSRLTAGVGFL
                     MKKNKIDVIWGEAAIDAPGKITVKAPTKSVQGPPAPAPKGALGPGSYQAKHIIVATGA
                     RPRALPGIEPDKKLVWTYFEAMVPERMPKSLVVIGSGAIGIEFASFYRTLGAEVTVVE
                     VMPQILPVEDAEIAAFARKRFEKQGIVIMTGAKVTKVEKSADSVTATVEDGKGGTKQV
                     TAERLISAVGVVGNVENLGLEQLGVKTERGIIMTDDLARTNVPGIYAIGDVAGPPMLA
                     HKAEHEGERCVDAIKGLHAEPLDKGKIPGCTYCNPQVASVGVTEQKAKEMGLDVRVGR
                     FPFAGNGKAIALGEPEGMVKTIFDKKTGKLLGAHMVGAEVTELIQGFVIAMNLETTEE
                     ELIHTVFPHPTLSEMMHESVLDAYGRVIHT"
     gene            complement(1872..>2210)
                     /locus_tag="VE686_00415"
     CDS             complement(1872..>2210)
                     /locus_tag="VE686_00415"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY82945.1"
                     /translation="LSHPTLIRRAHRNGNGRTLARSLFSENMEDRVSHYRRRRRNRLS
                     QQHLQQGAGRQRDASPAAWLVPLAGGVAAAIGIAAIFGFRSPRHPGSRPLDVERSRVE
                     HERQRRAPTI"
BASE COUNT          398 a          742 c          741 g          329 t
ORIGIN      
        1 cccgccgcac tcgaccatcc tcgccgtcgg cacgggcgag cagcgcccgg tggtgcgcga
       61 tggccaactc gcggtcgcga cggtgatgag cctcaccctc tcctgcgacc accgcgccgt
      121 cgacggcgcg cttggcgcca aactgatcag cgccttgaag gagctgatcg agaacccgat
      181 ggggatgctg gtttaggaga gctcatcccc tccgaagcgc agcgaagagc gccggatctc
      241 aggccgaaat gaagcgccat tttcggatgg agatcccggg tcgaccccgg gtaaagcccg
      301 gggccgcccg ggatgacgag cgagagaaac atggctgacc agtacgacat catcgtcatc
      361 ggcgcggggc ctggcgggta tgtgacggcg atccgggcgg cccagctcgg gttcaggacg
      421 gcggtcgtcg accgcgagca tctcggcggc atctgcctca actgggggtg catcccgacg
      481 aaggccctcc tgcgctcggc cgagatcttc cactacctgc agcacccgaa ggaatacggg
      541 ctcaccgtcg agggcaaggt cgggttcgac gccgcggcca tcgtcaagcg ctcgcgcgac
      601 gtgtcgagcc ggctcaccgc cggcgtcgga ttcctgatga agaagaacaa gatcgacgtg
      661 atctggggcg aggccgccat cgacgctccc ggcaagatca ccgtcaaggc gccgacgaaa
      721 tccgtgcagg gcccgcccgc cccggcgccg aaaggggcgc tcggccctgg ctcgtatcag
      781 gccaagcaca tcatcgtggc gacgggcgcc cggccgcggg cgctgcccgg catcgagccc
      841 gacaagaagc tcgtctggac ctacttcgag gctatggtcc cggagcgcat gccgaagtcg
      901 ctcgtggtca tcggctccgg tgccatcggc atcgagttcg cctccttcta ccgtaccctc
      961 ggcgccgagg tgaccgtggt cgaggtcatg ccgcagatcc tgcccgtcga ggacgccgag
     1021 atcgccgcct tcgcccgcaa gcgcttcgag aagcagggca tcgtcatcat gacgggcgcc
     1081 aaggtcacga aggttgagaa aagcgccgat tccgtcacgg caaccgtcga ggacggtaag
     1141 ggcggcacca agcaagtcac tgcggagcgg ctcatttccg ccgtcggcgt cgtcggcaat
     1201 gtcgagaacc tcggcctcga acagctcggc gtgaagaccg agcgcggtat catcatgacg
     1261 gacgaccttg cgcgcaccaa cgtgccgggc atctacgcca tcggcgacgt cgccggcccg
     1321 cccatgctcg cccacaaggc cgagcacgag ggcgagcgct gcgtcgacgc catcaagggc
     1381 ctccacgccg agcccctcga caagggcaag attcccggct gcacctactg caatccgcag
     1441 gtcgcctcgg tcggcgtgac ggagcagaag gccaaggaga tgggcctcga cgtgcgcgtc
     1501 ggccgcttcc ccttcgccgg caacggcaag gcgatcgcgc tcggcgagcc cgagggcatg
     1561 gtgaagacga tctttgacaa gaagaccggc aagctcctcg gcgcacatat ggtcggcgcg
     1621 gaggtgaccg aactgatcca gggcttcgtg atcgccatga acctcgagac caccgaggag
     1681 gagctgatcc acacggtgtt cccgcacccg accctctcgg agatgatgca cgagagcgtg
     1741 ctcgacgcct acggtcgcgt catccacacc tgatgggggc cgccgatgcg gagccaacct
     1801 ccgcctgacg gagcgcagcg gagctagagc agcggttcgt cggcgccgct cgtggcggtc
     1861 gctgccggtc ctcagatcgt gggggcgcgc ctctgccttt catgctcaac gcgcgaccgc
     1921 tcgacatcca gcgggcgaga tccggggtgg cgcgggctgc ggaagccgaa gatcgccgca
     1981 atgccgatag ctgctgcgac accgcccgcc aaaggaacca gccatgcagc cggggaggcg
     2041 tcgcgttgcc ggcccgctcc ttgttgtagg tgctgctggg acaacctgtt gcgtcgccgc
     2101 cgacgataat ggctcacgcg gtcctccatg ttttccgaga agagcgaacg ggcgagcgtg
     2161 cgcccgtttc cgtttcggtg agcacgacgg atgagggtcg gatgacttaa
//
LOCUS       DASQWN010000021         2223 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_895085, whole genome shotgun sequence.
ACCESSION   DASQWN010000021 DASQWN010000000
VERSION     DASQWN010000021.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2223)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2223)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2223
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_895085"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..626)
                     /locus_tag="VE686_00420"
     CDS             complement(<1..626)
                     /locus_tag="VE686_00420"
                     /inference="COORDINATES: protein motif:HMM:NF013488.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015035 - protein-disulfide reductase
                     activity [Evidence IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DsbA family protein"
                     /protein_id="HYY82946.1"
                     /translation="MPTRKITIYIDYKSPYAYLAVGPALSLENEYDVRLDWLPYVLEI
                     PLYLGSVEARNEHQWRRVRYAYMDARRLANRRGLVVRGPKKIFDSSLASMGLLFAKRQ
                     NVFATYNALTFERFWRRELDIEDRSAVKGVLEEAGADTTELFGYFDQEGPGELLAVTE
                     EAHRLGVFGVPMFVLDGELFWGADSLPLLRERLHQTARPGLERESDEH"
     gene            complement(638..>2223)
                     /locus_tag="VE686_00425"
     CDS             complement(638..>2223)
                     /locus_tag="VE686_00425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006473180.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="AMP-binding protein"
                     /protein_id="HYY82947.1"
                     /translation="ASDTCVLRYVLDRQARERPSQTFVCFEDGSEWSYADLLARVRRT
                     AAALQELGVAQGEHVVVWLPNGPEALRVFMALGYMGAVYVPINTGYRGPLLAHVLANS
                     GASLLVADSRLLSRLDDIAAPGIRRVVATGPAGSETTRETVALTDLEAKAGELADLER
                     PIRPWDTQSIIYTSGTTGASKGVLSTYVHSFTSMDRRAWPCVRDEDRFLINLPMFHIG
                     GSFITNAMLCRGGSIAMVESFRTETFWDTVRRTGSTAVFLLGVMGTFLMKRPPGAGDR
                     DHPLRMAFLVPLAEDGLAFSRRFGAEVFTLFNMTEIATPLLSEANPSKLGTCGRLREG
                     VEARLVDDNDCEVGTGSLGELILRMDDPWTLSHGYNKDPAATARAWRNGWFHTGDAFR
                     RDPDGNYEFVDRLKDVIRRRGENVSSFEVEAVVNLHPDVQESAAIPVPSDHGEDEVMI
                     VVAPKPGCEINPPALVTFLTDRMAHFMVPRYIRVLDALPKTPTAKIQKAALREAGRTE
                     HTWDREAAGIVLKRERLPT"
BASE COUNT          396 a          728 c          704 g          395 t
ORIGIN      
        1 ctgtgctcat cactctctcg ctccagcccc gggcgagccg tctgatggag ccgctcacgc
       61 aacagcggta ggctgtcggc gccccagaac agctcgccgt caagcacgaa catcggcacc
      121 ccgaacactc cgagccggtg cgcctcctcg gtgacggcga ggagttcgcc gggtccctct
      181 tggtcgaaat atccgaacag ctcggtcgta tccgcgccgg cctcctcgag cacgcccttc
      241 accgccgagc ggtcctcgat gtcgagctct cgccgccaga atcgctcaaa ggtgagcgca
      301 ttgtaggtag caaagacgtt ctggcgcttc gcgaacagca gccccattga tgcgagcgac
      361 gaatcgaaga tcttcttagg accgcggacc acaagcccgc gccggttcgc gagccgccgc
      421 gcgtccatgt aggcgtaccg cacccggcgc cattgatgct cgtttcgcgc ctctacgctg
      481 cccaggtaga ggggtatctc gaggacatag ggcagccagt cgaggcgaac gtcgtactcg
      541 ttttccaagc tgagggcagg gccgacagcg aggtacgcgt aggggctctt gtagtcgatg
      601 tagatggtta ttttgcgggt gggcatgggg cttatcttca cgtcggcaag cgctcgcgct
      661 tcagcacgat ccctgcggcc tcccgatccc acgtgtgctc ggtcctaccg gcctcgcgca
      721 gagcggcctt ctggattttc gctgtagggg tcttcggcag cgcgtctaga acacggatgt
      781 agcgtggcac catgaagtgc gccatccgat ctgtcaggaa ggtcacaagc gcagggggat
      841 tgatctcgca cccgggcttc ggcgcgacca cgatcatgac ttcgtcctcg ccgtggtcgc
      901 ttgggactgg gatcgcggcg ctctcctgca catccgggtg gaggttcacg acggcttcca
      961 cctcgaagga ggagacgttc tcgccgcgtc gtcgaatgac gtccttgagc cggtcgacga
     1021 attcgtagtt gccgtcggga tcgcgacgga acgcatcgcc cgtgtggaac cagccgttgc
     1081 gccaagctcg cgcggtcgcc gccgggtcct tgttgtagcc gtggctcaag gtccaagggt
     1141 cgtccatgcg caagatcagt tctccgaggc tgcccgtccc gacctcacag tcattgtcgt
     1201 cgacgagccg cgcctccacc ccctcgcgga gccgcccgca ggtgccgagc ttcgaaggat
     1261 tcgcctcgga gagcagcggc gtcgcgatct cggtcatatt gaacagcgtg aacacctcgg
     1321 cgccgaacct tcgcgagaat gcaaggccgt cctcggcgag tggtaccagg aaagccattc
     1381 gcagcgggtg gtcccggtca cccgcgccag gcggccgctt catcaagaac gtgcccatca
     1441 cgcccagcag gaagaccgcc gtggagcccg tacggcggac cgtgtcccag aacgtttcgg
     1501 tccggaagct ctcaaccatc gcgatcgagc cgccacggca cagcatggcg ttggtgatga
     1561 agctgcctcc gatgtggaac atcggaagat tgatgagaaa gcgatcttca tcccgcacgc
     1621 acggccaggc acgtcgatcc atgctggtga aggagtggac gtatgtggac agcactccct
     1681 tcgaggcgcc cgttgtgcct gacgtgtaga tgatggattg cgtgtcccag ggccggatcg
     1741 gccgctcgag atccgctagt tcgcccgcct tggcctcaag atccgtaagg gccaccgtct
     1801 cgcgagtggt ctctgatcca gcaggccccg tcgccaccac tctccgaatg ccgggcgcag
     1861 cgatatcgtc gaggcgcgag agaagacgcg agtccgcgac aagtaagctc gcgccagagt
     1921 tcgcgagcac gtgcgcgagg agtggtcccc gatacccggt gttgatgggc acgtacacgg
     1981 cacccatgta gccgagcgcc atgaacaccc gcagcgcctc aggcccgttt ggcagccaga
     2041 ccacgacgtg ttcgccctgc gcgacgccga gttcttgaag cgcggcggct gtgcgccgga
     2101 cgcgtgccag cagatcggcg taactccact cacttccgtc ctcgaagcag acgaaagtct
     2161 gggacggccg ctcccgggcc tgccgatcga ggacgtagcg cagaacgcag gtgtcagatg
     2221 ccg
//
LOCUS       DASQWN010000022         3514 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1194470, whole genome shotgun sequence.
ACCESSION   DASQWN010000022 DASQWN010000000
VERSION     DASQWN010000022.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 3514)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3514)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3514
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1194470"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..806)
                     /locus_tag="VE686_00430"
     CDS             complement(<1..806)
                     /locus_tag="VE686_00430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020093871.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF444 family protein"
                     /protein_id="HYY82948.1"
                     /translation="MYIIDRRLNPGGKSLANRQRFLRRAKALVRRAVRDSSKERSIKD
                     MEHGGEVTIPVDGVREPRFHRAGAGGVRDLILPGNKEFVQGDTIPRPPGGAGRGGPEG
                     SEDGGGEDDFRFVLTQEEYLELFLDDLELPDLAKRKLASIDSPVWRRAGYSVSGSPAN
                     LSLTRTMRNSLSRRIALRRPKAEEIAQLEEEVAALERDGLETDRLDVLRAELALMKQR
                     TLRIPYIDPFDVRYRRFEPHPRPVAQAVMFCLMDVSGSMTESMKDLAKRF"
     gene            complement(826..2772)
                     /locus_tag="VE686_00435"
     CDS             complement(826..2772)
                     /locus_tag="VE686_00435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019904959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004672 - protein kinase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PrkA family serine protein kinase"
                     /protein_id="HYY82949.1"
                     /translation="MFPTDDLFSSFARTYDSRRETEMTLSEYLQGCRDDPMMYASAPE
                     RILAAIGEPQMLDTAKDARLGRIFMNRTIRVYPAFAEFYGMEETIERIVSFFRHAAQG
                     LEERKQILYLLGPVGGGKSSLAERLKALMEQHPIYVLKAGNDMSPVFESPLGLFDPEQ
                     LGAEIEERYGVPRRRLTGLMSPWAVKRLDEFRGDLSKFKVVKVRPSRLRQIGIAKTEP
                     GDENNQDISSLVGKVDIRKLETLAQNDPDAYSFSGGLNRANQGMLEFVEMFKAPIKML
                     HPLLTATQEGNYVGTENIGAIPFSGVIMAHSNEAEWQTFKANKNNEAFIDRIYVIKVP
                     YCLRVTEEQKIYEKLIHGSELEGAPCAPATLEMLARFSVLSRLREHENSNAYSKMRVY
                     DGESLREVDPRARSMQEYKDSAGVDEGMDGVSTRFAFKVLAATFNHDTIEIAADPVHL
                     MYVLEQSIRREQLPDETEKRYMEFIKAELAPRYAEFIGHEIQKAYLESYHDYGQNLFD
                     RYVDYADAWIEDQDFKDPDTGQLLNRELLNQELTKIEKPAGIANPKDFRNEVVKFALR
                     SRASHGGRNPSWTSYEKLREVIERRMFSQVEELLPVISFGSKKDSDTEKKHGEFVERM
                     EARGYTERQVRRLVEWYMRVKQAG"
BASE COUNT          541 a         1146 c         1197 g          630 t
ORIGIN      
        1 aagaagcgct tcgccaagtc cttcatcgac tccgtcatgg agcccgacac gtccatgagg
       61 cagaacatga ccgcctgcgc gacggggcgc gggtgcggct cgaagcggcg gtagcgcacg
      121 tcgaaggggt cgatgtaggg gatgcgcagg gtgcgctgct tcatcagcgc gagctcggcg
      181 cgaagcacgt cgaggcggtc ggtctcgagc ccgtcccgct cgagcgccgc gacctcttcc
      241 tcgagctgcg cgatctcctc ggccttcggg cgccggagag caatgcggcg cgacagcgag
      301 ttgcgcatgg tgcgcgtgag cgacaggttg gccggcgaac ccgagaccga gtagccggcc
      361 cgccgccaca ccgggctgtc gatcgacgcg agcttgcgct tggcgagatc gggaagctcg
      421 aggtcgtcga ggaacagctc gaggtattcc tcctgggtca ggacgaagcg gaagtcgtcc
      481 tcgccgccgc cgtcctcgct cccctccggc ccgccgcggc ctgccccgcc cggcgggcgg
      541 ggaatggtgt cgccctgcac gaactccttg ttgcccggca ggatcaggtc gcgcacgccg
      601 cccgcgcccg cgcggtggaa gcgcggctcg cgcacgccgt cgacggggat cgtgacctcg
      661 cccccatgct ccatgtcctt gatgctgcgc tccttcgagg agtcgcgcac cgcacgccgc
      721 accagcgctt tcgcgcgccg caggaagcgc tgtctgttgg cgaggctctt ccctcccggg
      781 ttgaggcggc ggtcgatgat gtacatcgct atgctcgcga agggcttagc cggcctgctt
      841 caccctcatg taccactcga cgagacgccg gacctgacgc tcggtgtagc cgcgcgcctc
      901 catgcgctcg acgaactcgc cgtgcttctt ctcggtgtcg ctatccttct tcgagccgaa
      961 gctgatgacc ggcagcagtt cctcgacctg gctgaacatg cgccgctcga tgacctcgcg
     1021 cagcttctcg taggacgtcc aagagggatt gcggccgccg tgcgacgccc gcgagcgcag
     1081 cgcgaacttg accacctcgt tgcggaaatc cttcgggttg gcgatgccgg ccggcttctc
     1141 gatcttggtc agctcctggt tcaggagctc gcggttgagg agctgcccgg tgtcggggtc
     1201 cttgaagtcc tgatcctcga tccaggcgtc ggcatagtcg acgtagcggt cgaagaggtt
     1261 ctggccgtag tcgtggtacg actcgaggta cgctttctgg atctcgtggc cgatgaactc
     1321 ggcgtagcgc ggcgcgagct cggctttgat gaactccatg tagcgcttct cggtctcgtc
     1381 cggcagctgc tcgcgccgga tcgactgctc gagcacgtac atgaggtgga cggggtcggc
     1441 ggcgatctcg atggtgtcgt ggttgaacgt cgccgcgagc accttgaagg cgaagcgcgt
     1501 cgagaccccg tccatgccct cgtcgacgcc ggccgagtcc ttgtactcct gcatggagcg
     1561 ggcgcgcggg tcgacctcgc gcagggactc gccgtcatag acgcgcatct tcgagtaggc
     1621 gttcgagttc tcgtgctcgc gcaggcgcga cagcaccgag aagcgcgcca gcatctcgag
     1681 ggtcgcgggc gcgcacgggg cgccttcgag ctcggagccg tggatcagct tctcgtagat
     1741 cttctgctct tcggtgacgc gcaggcagta cggcaccttg atgacgtaga tacgatcgat
     1801 gaaggcctcg ttgttcttgt tggccttgaa ggtctgccac tcggcctcgt tcgagtgcgc
     1861 catgatgacg cccgagaacg ggatcgcgcc gatgttctcg gtgccgacgt agttgccctc
     1921 ctgcgtcgcc gtgagcagcg ggtgcagcat cttgatcggc gccttgaaca tctcgacgaa
     1981 ctcgagcatg ccctggttcg cccggttgag gccgcccgag aagctgtagg cgtcggggtc
     2041 gttctgcgcc agcgtctcga gcttgcggat gtcgaccttg ccgacgaggg acgagatgtc
     2101 ctggttgttc tcgtcgccgg gctccgtctt ggcgatgccg atctggcgca gccgcgacgg
     2161 cctgaccttg accaccttga acttcgagag atcgccgcgg aactcgtcga gacgcttgac
     2221 cgcccacggg ctcatgagac ccgtgaggcg ccggcgcggc acgccgtagc gctcctcgat
     2281 ctcggcgccg agctgctcgg gatcgaacag cccgagcggg ctctcgaaca ccgggctcat
     2341 gtcgttgccg gccttgagca cgtagatcgg atgctgctcc atcagcgcct tgaggcgctc
     2401 ggcgagagac gacttgccgc cgccgaccgg cccgagcagg tagaggatct gcttgcgctc
     2461 ctcgaggccc tgcgcggcgt gacggaagaa cgacacgatg cgctcgatcg tctcctccat
     2521 gccgtagaac tcggcgaagg cgggatagac gcggatcgtg cggttcatga agatgcggcc
     2581 gagccgggcg tccttcgccg tatcgagcat ctgcggctcg ccgatggcgg cgaggatgcg
     2641 ctcgggcgcg ctcgcgtaca tcatcgggtc gtcgcggcag ccctgcaggt attcggagag
     2701 ggtcatctcc gtttcgcggc gcgaatcgta ggtgcgcgca aagcttgaga agagatcgtc
     2761 ggtcgggaac atggccgcct gcgaatgctt catcatctta gctataaccc ccgggcagca
     2821 gttaaggttg ccgaacaatc gggcgggacg cgggcagaac cgcgcgagac ttgagaatta
     2881 acattactgg gcgggcgacg acggccggcg acttcggcgc gggtgccgcg aatgcgaaag
     2941 cgggtttgcc atggccccat cgtcgccctc cttcggtcga cggtgaccgg cgctcaaggc
     3001 gcgcggtcga acctcgacca tgcagccatc gtgccgaata ccaggcgcta cgcgacgggg
     3061 gcggtggaca gccaactttc cgtcgtgtgc ttcgttcgcc gggagtgtgg cacgcgcgcc
     3121 ctgcttcgcg cagcgttcgg gggcgccatc cacaaccgac ttcgagtcgg ccggctgcgg
     3181 ccctgcgccg caaccgcgct cagcggctca aggaggaacg cacggccgag tggtcgccat
     3241 cgtcgcaggc gaagacggtg tggcgcatga gcgcctcctc gccgggttaa cgcggcggga
     3301 gccgacggag ttcgatgtag ctgcggagcc gcggccgcag gctccggcat cgggcagcta
     3361 acattacgtc acccaaccgg aaccgccaaa gctaagccac gttgcctctg cacgcgggag
     3421 tgccgtgcca tgcgagatca tgatcgcgct tacgtcgttt gcgctgaccg gcgtcctggt
     3481 cgccatcacc gaaaacccgg gtctcgccac ggcg
//
LOCUS       DASQWN010000023         6691 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_3727, whole genome shotgun sequence.
ACCESSION   DASQWN010000023 DASQWN010000000
VERSION     DASQWN010000023.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 6691)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6691)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6691
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3727"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..667
                     /locus_tag="VE686_00440"
     CDS             <1..667
                     /locus_tag="VE686_00440"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003599916.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HYY82950.1"
                     /translation="RPVLDRGESFDAYATRHLSASRRKGLRRRRSKLAELGEVTFRSV
                     TEGPALAEAVEDFLALERAGWKGSRGTALASRPATIELARALFASAGGPVAARADMIR
                     LDGRPIAVSLALDCGRTAHLLKTAFDESLRAYGPGVVLEAEIVRACHEERFADRLDSA
                     SLPGGVLDDLYADRERIGDFLFATTAEVGGPALQRVADAERLRRAAMKQLKQLYSRMA
                     GGR"
     gene            731..1441
                     /locus_tag="VE686_00445"
     CDS             731..1441
                     /locus_tag="VE686_00445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019403426.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0004826 - phenylalanine-tRNA ligase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phenylalanine--tRNA ligase beta subunit-related
                     protein"
                     /protein_id="HYY82951.1"
                     /translation="MPIELSIAELRERFPGFRVAVIVAEDLRVAEARSPELDALIAER
                     EAACRAAWAGVDLSEIPGIAAWRAAYKAFGIKKTSYRSSVERLVKRVKADERLPAVNT
                     LVDLYNAVSLTHVFCCGADDLDRVTLPLAFRYARAGDSFIDMGAQPGEDPNDPPKDGE
                     VVYADAHHVLCRRWNWRQDARTGLSIATTRAVITVQANGLGDLEAALGDLTELVARFA
                     GGRCRVAVADAGMPVATL"
     gene            complement(1463..1927)
                     /gene="ruvX"
                     /locus_tag="VE686_00450"
     CDS             complement(1463..1927)
                     /gene="ruvX"
                     /locus_tag="VE686_00450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016920566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003674 - molecular_function [Evidence
                     IEA];
                     GO_process: GO:0008150 - biological_process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction resolvase RuvX"
                     /protein_id="HYY82952.1"
                     /translation="MNDDIEALVAALPKGARLLGIDLGTKTIGLALSDVERRIATPLE
                     TLKRTKFTPDADAIRRVVDRFGVGGLVVGLPLNMDGTEGPRSQATRAFVRNLKPLVQI
                     PVAFWDERLSTMAVTRTLMDADASRARRGALVDKMAAAYILQGALDRASPGE"
     gene            2017..2721
                     /locus_tag="VE686_00455"
     CDS             2017..2721
                     /locus_tag="VE686_00455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012334075.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal-dependent hydrolase"
                     /protein_id="HYY82953.1"
                     /translation="MQITWFGHSAFRLDFAGKVVLIDPFFTGNPAFDGDRAKAVAGAT
                     HILITHGHGDHIGDAVDISAQTGAKVVTNYDLCMYLASKGLKTFDPMNTGGTTDQDGF
                     TVTLVRADHSAGLVEAGVGFPLGNPNGVVVKAPGEPTVYHMGDTDIFGDMALIAEIHR
                     PQVAMVPIGDRFTMGPETAALAVSRFFKLKAAIPCHYGSFPIIEQTADRFVAALEGSG
                     VQAVVPHKHMPVTIGA"
     gene            2838..3200
                     /locus_tag="VE686_00460"
     CDS             2838..3200
                     /locus_tag="VE686_00460"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY82954.1"
                     /translation="MNFHSQGLHGIVDHAPTADPTVARAPVASASVRPSEGSGEDGRP
                     SRRIPEQDILVVGRRSGAKDKQDGPVRLVPGISRRRLAVRLLLVAALIGETIFTVRTW
                     PAKPIAVPDVSDSRSVIV"
     gene            3277..3564
                     /gene="gatC"
                     /locus_tag="VE686_00465"
     CDS             3277..3564
                     /gene="gatC"
                     /locus_tag="VE686_00465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011472713.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0030956 - glutamyl-tRNA(Gln)
                     amidotransferase complex [Evidence IEA];
                     GO_function: GO:0050567 - glutaminyl-tRNA synthase
                     (glutamine-hydrolyzing) activity [Evidence IEA];
                     GO_process: GO:0006424 - glutamyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase
                     subunit GatC"
                     /protein_id="HYY82955.1"
                     /translation="MSVDLETVRRIARLARIAVTDDDVPHLQGELNAILSFVEQLNEV
                     DVRGIEPMTSVTPMAMKKRQDGVTDGGYPELVVRNAPSTDDNFFLVPKVVE"
     gene            3694..5175
                     /gene="gatA"
                     /locus_tag="VE686_00470"
     CDS             3694..5175
                     /gene="gatA"
                     /locus_tag="VE686_00470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015823501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0030956 - glutamyl-tRNA(Gln)
                     amidotransferase complex [Evidence IEA];
                     GO_function: GO:0050567 - glutaminyl-tRNA synthase
                     (glutamine-hydrolyzing) activity [Evidence IEA];
                     GO_process: GO:0006424 - glutamyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase
                     subunit GatA"
                     /protein_id="HYY82956.1"
                     /translation="MTELTDLTLADARDGLKTKRFSSREIAQDHIAAIEGARALNAFL
                     VETPDQALAMAQASDARLAKGEGGPLEGVPLGIKDLFCTKDVVTTAGSKILEGFRPPY
                     ESTITSQLWRDGAVMLGKLNLDEFAMGSSNETSAYGPVTSPWRRPGSNAALVPGGSSG
                     GSAAAVAARLCLGATATDTGGSIRQPAAFTGTVGIKPTYGRCSRWGVVAFASSLDQAG
                     PITRTVRDAAILLRAMAGHDPKDTTSVDAPVPDFEAAVTRGVKGLKIGIPREYRLDGM
                     AAEIETLWADGIAWLKAAGAEIVDVSLPHTNYALPAYYIVAPAEASSNLARYDGVRYG
                     LRVDGRDITDLYERTRAAGFGREVKRRVMIGTYVLSAGYYDAYYVRAQRIRTLIKRDF
                     EEVYASGVDAILTPATPSAAFAVGDKGSGDPVEMYLNDVFTVTVNMAGLPGIAVPAGR
                     DAQGLPLGLQLIGRAFDEETLFAAAQVIEDAAGRMDLPEAWWA"
     gene            5166..5477
                     /locus_tag="VE686_00475"
     CDS             5166..5477
                     /locus_tag="VE686_00475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012254589.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY82957.1"
                     /translation="MGLSQVAPPSVALSTWLLAGFDPVLIVVAVYLGWSADQVGKIAV
                     AAIAALAVSLLVAWVVTGLGLPSPAPIGRDYPTLIPVRAAAAVAWATAAYVTRRLARR
                     S"
     gene            5549..5962
                     /locus_tag="VE686_00480"
     CDS             5549..5962
                     /locus_tag="VE686_00480"
                     /inference="COORDINATES: protein motif:HMM:NF019498.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupin domain-containing protein"
                     /protein_id="HYY82958.1"
                     /translation="MRSFIAATAAIATLLAVTTTAAAQAPATAKPEEILKEVVAGMPR
                     GERQEVRVFTATLKPGDRTPFHTHRFPVAAYVLEGAFTLELEGRPPVIVKAGEAILEP
                     PNVRMTGFNRAAENTRIVIFYVADPGTPFLDMAHH"
     gene            complement(6189..>6691)
                     /locus_tag="VE686_00485"
     CDS             complement(6189..>6691)
                     /locus_tag="VE686_00485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015931608.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="UvrB/UvrC motif-containing protein"
                     /protein_id="HYY82959.1"
                     /translation="VFERDHVRVDTGLSKSDVTVGHNLKAVIADLEKRMRAAAADLEF
                     EEAARLRDELKRLQAAELAIADDPMATQGAVEREAGKFAGAKKYGRQANLPPDGTARG
                     GGDAPLGYGPIGKGRSDEGTRIRKPTLDEMGPGTDRELPLTYKERPAGRSTQGFAGQR
                     PKYKRR"
BASE COUNT          983 a         2334 c         2297 g         1077 t
ORIGIN      
        1 ccggccggtg ctcgatcgcg gggagagttt cgacgcctac gcgacccggc atctgagcgc
       61 gagccggcgc aagggcctgc ggcggcggcg cagcaagctc gccgagctcg gcgaggtcac
      121 cttccgaagc gtgactgaag gccctgcgct cgccgaggct gtcgaggact tcctggcgct
      181 cgaacgcgcc ggatggaagg gatctcgcgg tacggcgctg gcgagccgtc cggcgaccat
      241 cgaactcgcc cgggcgctgt tcgcgagcgc cgggggcccg gtggccgccc gggccgacat
      301 gatccgcctc gatggccgcc cgatcgcggt cagcctcgcg ctcgactgcg gtcgtacggc
      361 acacctgctc aagacggcgt tcgacgagtc cctgcgcgcg tacgggcccg gggtcgtgct
      421 cgaggccgag atcgtgcggg cctgccacga agagcgcttt gccgaccggc tcgattccgc
      481 gagcctgccc ggcggcgtgc tcgacgacct ctacgccgac cgcgagcgca ttggcgactt
      541 tctcttcgct accactgccg aggtcggcgg gccggcgctc cagcgtgtcg cggacgccga
      601 gcggctccgg cgcgccgcca tgaagcagct gaagcaactc tattcgcgca tggccggagg
      661 gcggtagcgc cggttgtctc agaagccggc ctgtctcatg aggaggtccg gttcccctgg
      721 accccggccc atgcctatcg agctttccat cgccgaactt cgcgagcgtt ttcccgggtt
      781 ccgcgtcgcc gtgatcgtcg ccgaggatct gcgcgtcgcc gaggcgcgct cccccgagct
      841 cgacgccttg atcgccgagc gggaggctgc ctgtcgcgcc gcttgggcgg gtgtcgactt
      901 gtccgagatt cccggcatcg ccgcgtggcg cgccgcctac aaggcgttcg gcatcaagaa
      961 gacgagctac cgctcctccg tcgagcggct cgtgaagcgg gtgaaggcgg acgagcgcct
     1021 gcccgccgtg aacaccctcg tcgacctgta caacgcagtg tcgcttaccc acgtgttctg
     1081 ctgtggcgcc gacgacctcg acagggtgac gcttccgctc gcgttccgct acgcgagggc
     1141 cggcgacagc ttcatcgaca tgggcgccca gccgggcgag gatccgaacg atccgcccaa
     1201 ggacggggag gtcgtctacg ccgacgccca ccacgtcctg tgccgccgct ggaactggcg
     1261 ccaggacgcc cgcaccggtc tttcgatcgc gacgacccgg gcggtgatca ccgtccaggc
     1321 caacggtttg ggcgacctag aggccgcact cggcgacctt accgaactgg ttgcgcgctt
     1381 cgccggcggg cgctgtcgcg ttgcggttgc tgatgccggc atgcccgtcg cgaccctctg
     1441 agccgaagcg ctcctcgcaa cctcactcgc ccggggacgc gcggtcgagc gccccttgga
     1501 ggatgtatgc ggcggccatc ttgtcgacga gcgcgccccg gcgggcgcga gaggcgtcgg
     1561 cgtccatgag tgtccgcgtg accgccatgg tggacaggcg ctcgtcccag aaagccaccg
     1621 ggatctggac cagaggcttt agattgcgga cgaaagctcg ggtagcctgc gagcgcggac
     1681 cctcggtccc gtccatgttc agggggaggc cgacgacgag cccgccgacg ccgaaccggt
     1741 cgacgacgcg acggatggcg tcggcgtcgg gcgtgaactt cgttcgcttc agggtctcga
     1801 gcggcgtggc gatgcggcgc tcgacgtcgg agagcgcgag gccgatcgtc ttggtaccga
     1861 ggtcgatgcc gagcagccgc gcgcccttcg gaagcgccgc gacgagcgcc tcgatatcgt
     1921 cgttcatgcg cgatgatgtc ctcgtccttg tcccgcgggc cgcttcggct atcgtcccgc
     1981 gccgcgagac taggccatca cccgcaggag cacgagatgc agatcacctg gttcggccat
     2041 tccgccttta ggctcgactt cgccggcaag gtcgtgctga tcgacccgtt cttcaccggg
     2101 aacccggcgt ttgacggcga ccgggccaag gcggtggcgg gtgcgaccca catcctgatc
     2161 acgcatgggc acggcgacca tatcggcgac gcggtggaca tttcggccca gacgggcgcc
     2221 aaggtcgtga ccaactacga cctttgcatg tacctcgcgt cgaaggggct gaagacgttc
     2281 gatcccatga acaccggcgg caccaccgac caggacggct tcacggtgac tctggtgcgc
     2341 gcggaccact cggccggtct cgtcgaggcg ggggtcgggt ttcctctcgg caaccccaac
     2401 ggcgtcgtcg tgaaggcgcc cggcgagccg accgtctacc acatgggcga cacggacatt
     2461 ttcggcgaca tggcgctgat cgccgagatc catcggcctc aggtcgccat ggtgccgatc
     2521 ggcgaccgct tcacgatggg ccccgagaca gcggcgctcg cggtctcacg ctttttcaag
     2581 ctgaaggccg cgatcccgtg ccattacggc tcgtttccga tcattgagca gaccgcggat
     2641 cgctttgtcg cggcgctcga gggctcgggg gtgcaggcgg tggtccccca caagcacatg
     2701 ccggtgacga tcggggcatg acgcccccgc ggcggcggcc tcaaggttaa ggataactta
     2761 cggcggggct ggataggccc ggcgcgtttg cggcatagtg ggcgttaacg tttcgttaac
     2821 cacagggccc gcctgccgtg aacttccaca gccaaggcct gcatggcatc gtcgaccatg
     2881 cgcccacggc cgatccgacg gttgctcgag cgccggtcgc gtcggcttcg gtgcggccga
     2941 gcgagggatc cggagaggac gggcggcctt cgcggcgcat tcccgagcag gacatcctcg
     3001 tcgtcggtcg ccgcagcggc gcgaaggaca agcaggatgg gccggtgcgg ctggtgccgg
     3061 gcatttcccg ccggcgcctc gccgtgcggc tgctcctcgt tgccgccctc atcggcgaga
     3121 ccatcttcac ggtcaggacc tggccggcaa agccgatcgc cgtccccgac gtgtccgatt
     3181 cgcgaagcgt gatcgtctaa gctccgtcgg ttgcccggcg gcaggggcgg gtgctatagg
     3241 cgcgccgcac cttccccgta cccgcttggg cctgccatgt cggtcgatct cgagactgtc
     3301 cggcgcatcg cacggcttgc gcgtatcgcc gtcaccgacg acgacgttcc ccacctgcaa
     3361 ggcgagctga acgctatcct ctcgttcgtc gagcagctga acgaggtcga cgtgcggggc
     3421 atcgagccca tgacatccgt taccccgatg gccatgaaga agcggcagga cggcgtgacg
     3481 gacggcggct acccggagct ggtcgtccgc aacgcacctt cgacggacga caacttcttc
     3541 ctggtcccca aggtggtcga ataggcgctt gcgagcgcgt ggtcaccccg gggcggagcg
     3601 aagcgcagac ccgaggacct cgccatcgag agccgctttc tgcaccagat cccgccgcgg
     3661 cgagccgcgt ccggacgacg agaaaaatga accgtgaccg agctcaccga cctcaccctt
     3721 gccgacgccc gtgacggcct gaagacgaag cgcttctcct cgcgggagat cgcgcaggac
     3781 catatcgccg cgatcgaagg ggcgcgcgcg ctcaacgctt tcctcgtcga gactccggac
     3841 caggcgctcg ccatggcgca ggcttcggat gcccggctcg cgaaagggga gggcgggccg
     3901 ctcgagggcg tgccgctcgg catcaaggat ctgttctgca ccaaggacgt ggtcaccacg
     3961 gcagggtcga agatcctcga gggcttcagg ccgccctacg agtcgacgat cacctcgcaa
     4021 ctgtggcgcg acggcgccgt gatgctcggc aagctcaacc tcgacgagtt cgccatgggc
     4081 tcctcgaacg agaccagcgc ctacggcccg gtcacctcac cgtggcgtcg gcccggctcg
     4141 aacgcggcgc tcgtccccgg cggctcgtcg ggcggctcgg ccgccgccgt cgcagcacgc
     4201 ctttgcctcg gcgctacggc gaccgacacg gggggctcaa tccgccagcc ggcggctttc
     4261 acggggacgg tagggatcaa gccgacgtac gggcgctgct cgcgctgggg cgtggtcgcc
     4321 ttcgcgtcct cgctcgacca ggcgggcccg atcacgcgca ccgtgcgcga cgccgccatt
     4381 ctgttgcgcg ccatggccgg ccacgacccg aaggacacca cctccgtcga cgcgccggtg
     4441 cccgatttcg aggccgccgt gacgcggggt gtcaaggggc tgaagatcgg catcccgcgc
     4501 gagtaccgcc tcgacggcat ggccgccgag atcgagacgc tgtgggccga cggcattgcc
     4561 tggctcaagg cggcgggggc cgagatcgtc gacgtgtcgc tgccgcacac caactacgcc
     4621 ctgccggcgt actacatcgt cgcgcccgcc gaggcttcgt cgaacctcgc ccgctacgac
     4681 ggtgtgcgct acggcctgcg ggtcgatggc cgcgatatca cggatttgta cgagcgcacc
     4741 cgggccgccg gcttcggccg cgaggtgaag cgccgggtca tgatcggcac ctacgttctg
     4801 tcggccggct actacgacgc ctactatgtg cgggcgcaga ggattcggac cctcattaag
     4861 cgcgacttcg aggaggtcta cgcgtccggc gtcgacgcga tcctcacgcc ggcaacgccg
     4921 tccgccgcct tcgcggtcgg cgacaagggc tccggcgatc ccgtcgagat gtacctgaac
     4981 gacgtcttca ccgtgaccgt gaacatggcg ggcctgccag ggatcgccgt gccggccggt
     5041 cgcgacgccc aaggtcttcc gctcgggctc cagcttatcg gccgcgcgtt cgacgaagag
     5101 accctgttcg ccgccgccca ggtgatcgag gacgccgcgg ggcgcatgga cttaccggaa
     5161 gcctggtggg cctgagccag gtggcgcctc cctccgtcgc cctctcgacg tggctgctgg
     5221 ccggcttcga tccggtgctg atagtggtcg ccgtctacct cggttggtcc gcagaccagg
     5281 tcggcaagat cgccgtcgcc gcgatcgcgg cgctcgcggt gtcgctgctc gtcgcctggg
     5341 tcgtcaccgg tctcgggctg ccctcgccgg cgccgatcgg acgcgattac ccgacgctca
     5401 ttcccgtccg cgccgcggcg gccgtcgctt gggcgaccgc cgcctacgtg acgaggcgct
     5461 tggcccgtcg atcctagttt acgaccgggc agctttgcac ggctgccccg gagcaggcac
     5521 actccgctcg tctggagggg aggcccctat gagaagcttc atcgccgcca ccgccgccat
     5581 cgcgacgttg ttggctgtaa cgacgaccgc agcagcgcag gcgccagcga ccgcgaagcc
     5641 ggaggaaatc ctgaaggaag tggtggcggg gatgccgcgc ggcgagcgcc aggaggtccg
     5701 tgtgttcacg gcgaccctga agccgggtga ccgaacgccg ttccacaccc accgattccc
     5761 tgtcgccgcc tacgtgctcg agggcgcctt cacgctcgag ctggagggtc gcccgcccgt
     5821 gatcgtcaaa gcgggcgagg cgattctcga gccgccgaac gtgcgcatga ccggcttcaa
     5881 tcgtgcagcc gagaacacgc gcatcgtgat cttctacgtc gccgacccag gcacgccctt
     5941 cctcgacatg gcgcaccact gaggactgtc gcgtgaccgt ccggcttttg gcgcggcgac
     6001 gacgcgaccg gcgtggcgtg agctgcctag cgcagcccga agaacgacag gatcgcgatg
     6061 atgatgacga cggccccgac gagccagata aggttgttca tgtccgcggt gctccaagct
     6121 gtgccattcg acaacccggg acacaaacca atgttccggg gccttgccgc cagcggaggg
     6181 gaccgaggct agcgccgctt gtacttcggc cgctggcctg cgaagccttg agtggagcgg
     6241 ccggcgggac gctccttgta ggtgagggga agctcgcggt ccgtccctgg gcccatttca
     6301 tccagggtgg gcttgcggat ccgggtgccc tcgtcggagc ggcccttccc gatcgggccg
     6361 tagccgaggg gtgcgtcccc gccgcccctg gccgtgccgt ccggcggcag gttggcctga
     6421 cggccgtact tcttggcgcc ggcgaacttg ccggcctcgc gctcgaccgc tccttgcgtc
     6481 gccatgggat cgtccgcgat ggcgagttcc gccgcctgca gtcgcttgag ctcgtcgcgc
     6541 agccgcgccg cctcctcgaa ttcgaggtcg gcggcggcgg cccgcatgcg cttctcgagg
     6601 tcggcgatga cggccttgag gttgtggccg acggtaacgt cggacttgga caaccccgtg
     6661 tcgacgcgca cgtggtcccg ctcgaacacg g
//
LOCUS       DASQWN010000024         2664 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1194796, whole genome shotgun sequence.
ACCESSION   DASQWN010000024 DASQWN010000000
VERSION     DASQWN010000024.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2664)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2664)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2664
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1194796"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..859
                     /locus_tag="VE686_00490"
     CDS             <1..859
                     /locus_tag="VE686_00490"
                     /inference="COORDINATES: protein motif:HMM:NF014841.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051287 - NAD binding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="NAD(P)-dependent oxidoreductase"
                     /protein_id="HYY82960.1"
                     /translation="IGQIDLPAERLAGMSKLRAIFNVEGNFLPNIDYGWCLDHGVHVL
                     NTSPVYATSVAETALGMALDLAREITATHEAFRSVSEKWGLESNACSFLLTGAKAGIV
                     GLGDLGGALRRMLVPFRCEVRVFDPWLSERRIREQDCIPSSLDEVFRQSRIVFLFASS
                     TVENQGFIGERELSLMQRGSVVLVMSRAGIIDFGALERAVRDGHVRAGIDVFPVEPLP
                     ADSALRKLHGVVLSSHRSGGMRESFLEIGRLVLADAELILRGLPPQVCRRAERETVAR
                     MRSRPVFRS"
     gene            911..1981
                     /locus_tag="VE686_00495"
     CDS             911..1981
                     /locus_tag="VE686_00495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007701409.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016853 - isomerase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sugar phosphate isomerase/epimerase"
                     /protein_id="HYY82961.1"
                     /translation="MRTIKGPGVFLAQFAGDKDPFNSIEGLADWAAGKGFQGVQIPTW
                     DRRVIDLKAAAENQAYCDDYAGRLAEHGLVVTELASHLQGQLVALHPAYDHPADSFAA
                     ATVRGNPQARQQWAVEQLHLCAKASRRFGIDRHVTFSGSLLWPFLYPYPQWTDGLIED
                     GFDEQARRWRPILDAFDENGVDLCYEIHPAEDLHDGLTFEMFLERVGNHPRCNIMYDP
                     SHLVLQAIDYLAYIDHYHERIRMFHVKDAEFRPNGKTGAYGGFQPWMRRAGRFRSPGD
                     GQVDFKAVFSKLSGYDFDGWAVLEWECCLKNSEDGAAEGAKFIADHIIRVSERAFDDF
                     VKANADREINNRILGIGRETRA"
     gene            1978..>2664
                     /locus_tag="VE686_00500"
     CDS             1978..>2664
                     /locus_tag="VE686_00500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007788971.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0016651 - oxidoreductase activity, acting
                     on NAD(P)H [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Gfo/Idh/MocA family oxidoreductase"
                     /protein_id="HYY82962.1"
                     /translation="MSDSRVRPLRLGMIGGGEGAYIGNIHRIAARLDGVFQLVAGAFD
                     ADAARGHRFAATQGLDPARSYDDYRAMIAAENMRDDRVEAVAICTPNHTHFPIAKAFL
                     EAGYDVICEKPLTTTLADAIELERLVKATGRFMGVTYTYSGYPMVHAARETVASGQLG
                     KIRVVQVEYPLEWMATGIELEGNQQAAWRTDPKKNGRGGSISDIGTHAYHLAGYVTGL
                     EAEAIAADLAT"
BASE COUNT          481 a          857 c          863 g          463 t
ORIGIN      
        1 catcggccag atcgacctgc cggcggagcg tcttgcgggc atgagcaagc tgagggcgat
       61 cttcaacgtc gaaggaaact tcctgcccaa cattgattac ggctggtgcc tcgaccacgg
      121 agtccacgtg ctgaacacca gcccggttta cgctacatcg gtcgcggaaa ccgcgcttgg
      181 catggcgctc gacctggcgc gcgagatcac cgctacccat gaggcgttcc gctcggtctc
      241 ggaaaaatgg ggacttgaaa gcaatgcgtg cagcttcctg ctgaccggcg cgaaggccgg
      301 catcgtcggg cttggcgatc tcggcggcgc attgcgccgc atgctcgtcc cgttccgttg
      361 tgaagtccgc gtcttcgacc cttggctctc cgaacgacgc atccgcgagc aggactgcat
      421 cccgtccagc ctcgacgagg tgttcaggca gtcgcgcatc gtgttcctgt tcgccagttc
      481 taccgtcgag aatcagggct tcatcggcga gcgcgagtta tctctgatgc agcgcggctc
      541 cgtcgtgctg gtgatgagcc gcgccggcat catcgatttc ggcgcgctgg agcgggcggt
      601 tcgcgacggc catgtacgcg ccggtattga cgtctttccg gtcgagccgc taccggcaga
      661 ctccgccttg agaaagctgc acggtgtcgt cctctccagc catcgcagcg gcggcatgcg
      721 ggagagcttc ctcgaaatcg gccggctggt gctggccgat gcggaactca ttctgcgcgg
      781 cctgccgccg caggtctgca ggcgcgccga gcgcgagacg gtggcccgca tgcgcagccg
      841 gccggtgttc agatcgtaga tggatgaagt ccgacaaacc ggcgcggcgc ggtgcctgaa
      901 ggagagatag atgcggacga taaagggccc gggcgttttc ctggcgcagt tcgcgggcga
      961 caaggacccg ttcaactcga tcgagggact ggcggactgg gctgccggca aagggttcca
     1021 aggcgtgcag atccccacct gggacaggcg cgtcatcgac ctgaaggcgg cggcggaaaa
     1081 ccaggcctat tgcgacgact acgccggcag gctggccgaa cacggcctcg tcgtcacgga
     1141 gttggcctcg cacttgcagg gccagctcgt ggcgctgcac cccgcctacg accacccagc
     1201 ggattccttc gccgccgcca cggtgcgcgg caatccgcag gcgcgccagc aatgggcggt
     1261 ggagcaactg cacctgtgcg ccaaggcgtc ccggcgcttc ggcatcgacc ggcacgtcac
     1321 cttttccggc tcgttgcttt ggccattcct ctatccttat ccgcaatgga ccgacgggct
     1381 gatcgaggat ggattcgacg agcaggcacg gcgctggcgg ccaatcctcg acgcctttga
     1441 cgaaaacggc gtcgacctct gctacgagat ccatcccgcc gaggacctgc atgacggact
     1501 gaccttcgag atgttcctgg agcgcgtcgg caaccatccg cgctgcaaca tcatgtacga
     1561 tcctagccac ctcgtgctgc aggcgatcga ctacctcgcc tatatcgacc actatcacga
     1621 gcgtatccgc atgttccacg tgaaggacgc cgagttccgc ccgaacggca agaccggcgc
     1681 ctatggcggc ttccagccct ggatgcggcg cgccgggcgc ttccgctcgc cgggcgacgg
     1741 gcaggtcgac ttcaaggcgg tgttctccaa gctgtcgggc tacgatttcg acggctgggc
     1801 ggtgctggaa tgggagtgct gcctgaagaa ttccgaggac ggcgcggccg aaggcgccaa
     1861 gtttatcgcc gaccatatca tccgcgtatc cgagcgtgcg ttcgacgatt tcgtcaaggc
     1921 gaatgccgac cgggagatca acaacaggat tctcggcatc ggcagggaga cgcgggcatg
     1981 agcgacagtc gggtacggcc gctgcggctc ggcatgatcg gcggcggcga aggtgcctat
     2041 atcggcaaca tccatcgtat cgccgcgcgg ctcgacggcg tattccagct cgtcgctggt
     2101 gccttcgatg ccgatgcggc gcgcggccat cgcttcgccg cgacgcaagg gctcgatcct
     2161 gcccgctcct atgacgacta cagggcgatg atcgcggcgg agaacatgcg tgacgaccgt
     2221 gtcgaggcgg tggccatctg tacgccgaac catacgcatt tcccgatcgc caaggccttc
     2281 ctggaagccg gctacgacgt catctgcgag aagccgctga ccacgacact tgcggacgcc
     2341 atcgaactgg aacggctggt aaaggcgacc ggtcgcttca tgggtgtgac ctacacctat
     2401 tcgggctatc cgatggtgca cgcagcgcgc gaaacggtgg caagcggcca gctcggaaag
     2461 atccgcgtcg tgcaagtcga gtatccgctc gaatggatgg cgaccggcat cgaactcgag
     2521 ggcaaccagc aagcggcttg gcgcacggac cccaagaaaa atggccgtgg cggctcgatt
     2581 agcgacatcg gcacccacgc ctaccacctc gcgggctacg tcaccggact cgaagccgag
     2641 gcgattgcag ccgatctcgc aacg
//
LOCUS       DASQWN010000025         3087 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_698713, whole genome shotgun sequence.
ACCESSION   DASQWN010000025 DASQWN010000000
VERSION     DASQWN010000025.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 3087)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3087)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3087
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_698713"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..671)
                     /locus_tag="VE686_00505"
     CDS             complement(<1..671)
                     /locus_tag="VE686_00505"
                     /EC_number="4.6.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012029707.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009975 - cyclase activity [Evidence IEA];
                     GO_function: GO:0016849 - phosphorus-oxygen lyase activity
                     [Evidence IEA];
                     GO_function: GO:0032555 - purine ribonucleotide binding
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenylate/guanylate cyclase domain-containing
                     protein"
                     /protein_id="HYY82963.1"
                     /translation="MATTPKRRLTTILCADVHGYSRLMGADEAGTLADLRRSRAAMTA
                     LVERHDGRVVNTWGDALIAEFPSVVEAVQCAIEVQQELSAHEADRPEAQRMRYRIGIN
                     LGDVMVDGSDIYGDGVNIAARLQELAEPGGILISGPVYDQVHNKLTIGFDCLGQQQVK
                     NVSVPVMSYRVALSGALTAQPHVADAHPAATRATAPSTGFALLDWYRDLPRHSAILFA
                     VCLLLV"
     gene            complement(676..1848)
                     /gene="queG"
                     /locus_tag="VE686_00510"
     CDS             complement(676..1848)
                     /gene="queG"
                     /locus_tag="VE686_00510"
                     /EC_number="1.17.99.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015931875.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:0052693 - epoxyqueuosine reductase
                     activity [Evidence IEA];
                     GO_process: GO:0008616 - queuosine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA epoxyqueuosine(34) reductase QueG"
                     /protein_id="HYY82964.1"
                     /translation="MRGAELKREVETRAKALGFDVMRVAPAQAAPEVRERLEAWLAEG
                     HHGEMTWMAETAERRAAPNALWPEAKSVVMLGMSYGPKDDPLASLALKDRGTISVYAR
                     MRDYHDVVKGKLKELAGFLAARSGEDVKVFVDTAPVMEKPLAQAAGLGWQGKNTILVS
                     REFGSWLFLGSIFTAAELPTDPPEPDHCGSCTRCLDVCPTNAFPAPYRLDARRCIAYL
                     TNEHKGPIEAELRPLMGNRVFGCDDCLAVCPWNKFAQTAREARLAQREEFAAPPLAEL
                     ARLDDAAFRARFAGTPVKRTGRDRFLRNVLIAIGNSGDPELAAEAVRLLDDASPLVRA
                     MAVWAASRLLPGDAVADLAARYRPLEPDADVRGEWDRALPHAARAAPCDSAALALQ"
     gene            complement(1845..2534)
                     /locus_tag="VE686_00515"
     CDS             complement(1845..2534)
                     /locus_tag="VE686_00515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017485713.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_process: GO:0006749 - glutathione metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione S-transferase family protein"
                     /protein_id="HYY82965.1"
                     /translation="MAILHHYPFCPQSRFVRLVLAEIGMESQTVEERPWERRPEFLAT
                     NPAGTTPVLQDGQLAVPGAAVIAEYLDETRGLGLNGRRLLPEGPAERVEVRRLLDWFL
                     VKFHDEVSGYLVTEKIYKRFMPTNGGGGAPDMAAIRAARTNVRYHLKYIGYLVATRNW
                     LAGDDLTYADLAAAAHLSAADYLGDVPWDEDDSAKAWYARVKSRPAFRALLADRVPGM
                     APPAHYADLDF"
     gene            2691..>3087
                     /locus_tag="VE686_00520"
     CDS             2691..>3087
                     /locus_tag="VE686_00520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009763462.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0050380 - undecaprenyl-diphosphatase
                     activity [Evidence IEA];
                     GO_process: GO:0016311 - dephosphorylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyl-diphosphate phosphatase"
                     /protein_id="HYY82966.1"
                     /translation="MTQYVQALLLGFVEGVTEFLPVSSTGHLLLLGHFLGFESTGKAF
                     EVLVQLGAILAILIAFFGRLWNIALALPSDPSARRFVVGVLAAFLPAAAIGAVLHGFI
                     KGVLFNPWVVCVALILGGFVLLVVDRMRLE"
BASE COUNT          439 a         1039 c         1131 g          478 t
ORIGIN      
        1 acgagaagca ggcagacggc gaagaggatc gcgctgtggc gcggcaggtc cctgtaccag
       61 tccagcagcg cgaacccggt cgaaggcgcg gtcgcgcgcg tagccgcggg gtgcgcgtcc
      121 gccacatggg gctgcgccgt cagagcgccg ctaagcgcaa cgcggtagct catcaccggc
      181 acggagacgt tcttgacctg ctgctggccg aggcagtcga agccgatggt gagcttgttg
      241 tggacctggt cgtagacggg ccccgagatg aggatgccgc cgggctcggc gagctcctgc
      301 aggcgggccg cgatgttgac gccgtcaccg tagatgtcgc tgccgtcgac catgacgtcg
      361 ccgaggttga tgccgatgcg gtagcgcatg cgctgcgcct cggggcggtc cgcctcgtgc
      421 gccgagagct cctgctgcac ctcgatggcg cattgcaccg cctcgacgac gctcgggaac
      481 tccgcgatca gggcgtcgcc ccaggtgttc acgacgcggc cgtcgtggcg ctcgacgagc
      541 gccgtcatgg cggcgcgcga gcggcgcagg tcggcgagcg tgccggcctc gtccgcgccc
      601 atcaggcgtg agtagccgtg cacgtcggcg cagaggatgg tcgtcaggcg gcgtttcggc
      661 gtcgtggcca tgccgtcatt gtagcgccaa agcggcgctg tcgcacggtg cggcgcgcgc
      721 ggcgtgcggt agcgcacggt cccactctcc ccgcacgtcc gcatcgggct cgagcgggcg
      781 atagcgcgcg gcgaggtccg cgaccgcgtc gccgggcagg aggcggctcg cggcccaaac
      841 ggccatggcg cgcacgagcg gcgacgcatc gtcgaggagg cgcacggcct cggccgcgag
      901 ctccgggtcg ccggagttgc cgatggcgat gagcacgttg cgcaggaagc ggtcgcgccc
      961 ggtgcgcttc accggcgtcc cggcgaagcg ggcccggaag gcggcgtcgt cgaggcgggc
     1021 gagctccgcg aggggcggcg ccgcgaactc ctcacgctgc gctaggcgcg cctctcgagc
     1081 ggtttgcgcg aacttgttcc atgggcagac ggcgaggcag tcgtcgcagc cgaagacgcg
     1141 gttgcccatg agggggcgca actccgcctc gatcgggcct ttgtgctcgt tcgtcaggta
     1201 ggcgatgcag cgccgagcat cgaggcggta cggggccgga aaggcgttcg tggggcacac
     1261 gtcgaggcag cgggtgcagg agccgcaatg gtccggctcg ggcgggtccg taggcagctc
     1321 ggctgccgtg aagatcgagc cgaggaaaag ccagctgccg aactcgcgcg acaccaggat
     1381 ggtgttcttg ccctgccagc cgaggcccgc ggcctgcgcc aggggcttct ccatcacggg
     1441 ggcggtgtcg acgaagacct tcacgtcctc gcccgagcgc gccgccagga agccggcgag
     1501 ctccttgagc ttgcccttca cgacgtcgtg gtagtcgcgc atccgagcgt agaccgagat
     1561 ggtgccgcgg tccttcagtg cgagggaggc gagcgggtcg tccttcgggc cgtagctcat
     1621 gccgagcatg acgacgcttt tcgcttcggg ccagagcgcg ttcggagcgg cgcggcgttc
     1681 ggccgtctcg gccatccagg tcatctcgcc gtgatgccct tccgcgagcc aggcctctag
     1741 gcgctcgcgg acctcgggcg ccgcctgcgc gggcgccacg cgcatgacat cgaagccgag
     1801 cgccttggcg cgcgtctcga cctcccgctt gagctcggcg cccctcaaaa atcgaggtcg
     1861 gcgtagtgcg ctggcggcgc catcccgggc acccggtcgg cgaggagcgc gcggaaggcc
     1921 ggccgggact tcacccgcgc gtaccaggct ttcgcgctgt cgtcctcgtc ccatggcacg
     1981 tcgcccaggt agtccgccgc cgagagatgg gcggcggcgg cgagatcggc ataggtcaga
     2041 tcgtcgcccg caagccagtt ccgcgtcgcg acgaggtagc cgatgtactt gagatggtag
     2101 cgcacgttcg tgcgcgccgc gcggatcgcc gccatgtcgg gcgccccgcc gccgccgttc
     2161 gtcggcatga agcgcttgta gatcttctcg gtgacgaggt agcccgaaac ctcgtcgtgg
     2221 aacttgacca ggaaccagtc gagcaggcgc cgcacctcca cgcgctcagc cgggccttcc
     2281 ggcagcaggc ggcggccgtt gagcccgagg ccccgggtct cgtcgaggta ctcggcgatc
     2341 acggcggcgc ccggcacggc gagctgcccg tcctgcagca ccggggtggt gccggcaggg
     2401 ttcgtcgcca ggaactccgg ccgccgctcc cacggtcgct cctcgacggt ctgcgactcc
     2461 atcccgatct cggcaaggac aagacggacg aaacgcgact gcggacagaa cggataatgg
     2521 tggagaatgg ccatgcgggc tgagacgggg aaaggcgggc gggattaagg ccggggagag
     2581 ttaatggcgc ctaactgtgc ggaagggaag gcaatgctga gtggcgctac gcgcaaggcc
     2641 cgctataacg cgcgcggcga atccgccgcc actcctccga agagccctgc atgacgcaat
     2701 acgttcaagc gctgctgctc ggcttcgtcg agggcgtgac cgagttcctg ccggtgtcat
     2761 cgaccggcca cctcctgctc ctgggccact tcctcggctt cgagtcgacc ggcaaagcct
     2821 tcgaggtgct cgtgcagctc ggcgccatcc tggcgatcct gatcgccttc ttcgggcgcc
     2881 tgtggaacat cgcgctggcg ctgccgtccg acccgtcggc gcgccgtttc gtcgtcgggg
     2941 tgctggcggc cttcctgccc gcagccgcga tcggagccgt gctgcacggc ttcatcaagg
     3001 gtgtcctctt caacccctgg gtcgtgtgcg tcgcgctgat cctcggcggc ttcgtgctcc
     3061 tggtggtcga ccgcatgcgg ctcgaag
//
LOCUS       DASQWN010000026         4143 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1195135, whole genome shotgun sequence.
ACCESSION   DASQWN010000026 DASQWN010000000
VERSION     DASQWN010000026.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 4143)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4143)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4143
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1195135"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            219..1181
                     /locus_tag="VE686_00525"
                     /pseudo
     CDS             219..1181
                     /locus_tag="VE686_00525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018263258.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent helicase C-terminal
                     domain-containing protein"
     gene            complement(1199..1834)
                     /gene="cmk"
                     /locus_tag="VE686_00530"
     CDS             complement(1199..1834)
                     /gene="cmk"
                     /locus_tag="VE686_00530"
                     /EC_number="2.7.4.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012322504.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004127 - cytidylate kinase activity
                     [Evidence IEA];
                     GO_process: GO:0015949 - nucleobase-containing small
                     molecule interconversion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="(d)CMP kinase"
                     /protein_id="HYY82967.1"
                     /translation="MIIAIDGPAASGKGTLAKRLAAHFGLPHLDTGLLYRAVARTILD
                     RNSDLAHEPTATLVAQSLDTSHLDDPRLREREMGEAASLVSGFQPVRDALIEFQRRFA
                     AQLPGAVLDGRDIGTVVCPIAEVKLFVTATPEERARRRHLELVARDEPADFTAILEDI
                     RRRDERDTSRAVAPLRPAPDAVVLDTTSLDADAAFRRALEVVESARGRMTA"
     gene            complement(1843..3210)
                     /gene="aroA"
                     /locus_tag="VE686_00535"
     CDS             complement(1843..3210)
                     /gene="aroA"
                     /locus_tag="VE686_00535"
                     /EC_number="2.5.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018042728.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003866 - 3-phosphoshikimate
                     1-carboxyvinyltransferase activity [Evidence IEA];
                     GO_process: GO:0009423 - chorismate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-phosphoshikimate 1-carboxyvinyltransferase"
                     /protein_id="HYY82968.1"
                     /translation="MTGRRSRVSHGGAEASPVTAVPGSALRGRVRVPGDKSISHRSLI
                     LGLLAIGETRIEGLLEGDDVLRTARACEALGAAIMHDAAGRWRVRGAGIGGLVEPRDV
                     LDFGNAGTGSRLMMGVAGSHPIVATFDGDASLRKRPMRRILDPLVRMGTNVVSEAEGG
                     RVPLTLRGPRETIPIVYETPAASAQIKSAVLLAGLNSPGRTTVVEQAATRDHTERMLR
                     HFGATVTVEPHGGDGRAISLEGHPELRGAEVVVPADPSSAAFPLVAALITPGSEVIVE
                     GVMTNPLRTGLITTLLEMGAEIEQTNARDEGGETVADLKVRASPLFGVDVPAARAPSM
                     IDEYPVLAVAASFARGSTRMRGLHELRVKESDRLAAVAAGLDAAGVIHEIEGDDLIVH
                     GTGRAPLGGGTVATHLDHRIAMAFLVMGLASAEGMRVDDGTMITTSFPSFVPMMRELG
                     AALSD"
     gene            3356..3733
                     /locus_tag="VE686_00540"
     CDS             3356..3733
                     /locus_tag="VE686_00540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015933413.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR02300 family protein"
                     /protein_id="HYY82969.1"
                     /translation="MAKPELGLKRLCANCGAKFYDLNKDPIVCPKCDTVFQAAQLTRV
                     PSPAAARARDPEEETDVEPAGPEIVSLDEVEASENEKDVVVAEDDVDIAETTDDTFLE
                     EEEEGEDDVTALIDGDIEDDEEA"
     gene            3825..3900
                     /locus_tag="VE686_00545"
     tRNA            3825..3900
                     /locus_tag="VE686_00545"
                     /product="tRNA-Ala"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:3858..3860,aa:Ala,seq:ggc)
BASE COUNT          619 a         1445 c         1478 g          601 t
ORIGIN      
        1 gctgccaagc actctcttgc gccgagtgct agcctgcgac tccgaggccg cttagcgcca
       61 tccctccccg cgaggggagg gcggagacgg gcgcgtcagc gcccgcccgg gtggggcgga
      121 accgcggtgc cgactcagac acatcgggct tccgccccac cccgctcgcg cctgcaggcg
      181 cgagtcgccc tcccctcgcg gggagggatg atgcctcgct cggcaccctc gtcgcgctcg
      241 cctatccgga ccgcattgca aaggcgcggg ggcgcccggg cgagtacgtg atggcaaacg
      301 gccgcggcgg caccatggag gcacacgagc ggctcgcgcg cgagccgttc ctcgccgtcg
      361 ccgagatcgc cggcgctgcc gcctcggcgc ggatcctcgc ggccgccgcg atattgctgc
      421 ccgagattga ggctctggct ggcgagcgca tcgtgtccgc ccaggaggtg gcctacgacc
      481 ggggcgctca gtccctgagg gcgcgcgaca cgcgccgcct cggcgccgtc gtgctctccg
      541 agcaccctct gccggtaccc gcgaccgagg aggcggcgcg ggctctcgcg cgtgggatcg
      601 cgtcggccgg cgtcggtgcc ctgccgtggt cgaaggcgct catgcagtgg cgcgagcggg
      661 tcgccttcct gcgccgcgca gagggcgagg aatggccgga tgtctccgac gacactctcg
      721 cgctcaccgt cgaggagtgg ctcgcgccgc acctcgtcgg caaggcggcg gtcgcggacc
      781 tcgcgcccga cgagctgtcc gacgccgtgc acgccctcct gccctggccc ctgcggcgtc
      841 ggctcgacga cgaggcgccg acgcacattg aggtcccgac gggctcccgt atcgccatcg
      901 actatggcgg ggagcagggc ccggtgttgg cggtgcgcgt gcaggagctg ttcggcctcg
      961 accgccaccc gaccatcgcg ggcgggcgcg tgcccctcgt cctgcagctt ctgtcgccgg
     1021 cgcagcgacc gatccagatc acccgcgatc tgcccggctt ctggcgcggc tcctggacgg
     1081 cggtgcgggc cgacatgcgc ggccagtatc ccaagcatcc ctggcccgag gatccgttga
     1141 gcgcgccgcc aacccgccgc gccaagcccc gcgcaacttg agaggagccg gcgaccgcct
     1201 acgcggtcat gcggcctcgg gcactctcga ctacctcaag ggccctccgg aacgcggcgt
     1261 cggcgtcgag tgaggtagtg tcgaggacga ccgcatcggg agcgggccgc aggggagcga
     1321 cggcgcgcga ggtatcgcgc tcgtcgcggc ggcggatgtc ctccaggatc gccgtgaagt
     1381 cggccggctc gtcgcgggcg acaagctcga ggtggcgccg gcgcgctcgc tcctcgggcg
     1441 tcgcggtgac gaacagcttc acctccgcga tcgggcacac caccgtgccg atgtcgcggc
     1501 cgtcgaggac ggcgcccggg agctgcgccg cgaagcgacg ctggaactcg atgagcgcgt
     1561 cgcgcacggg ctggaagccc gagacgaggg aggcggcctc gcccatctcg cgctcgcgca
     1621 ggcgcgggtc gtcgagatgg gacgtgtcga gggattgcgc gaccagggtc gcggtcggct
     1681 catgcgctag atctgagttt ctgtcgagaa tcgtccgggc gaccgcccgg tagaggaggc
     1741 cggtgtcgag gtgcggcagg ccgaaatggg ctgcgagacg cttggcaagg gtgcccttgc
     1801 cggaggccgc cgggccgtcg atggcgatga tcatcccggc gctcaatcgc tcaaagccgc
     1861 accaagttcc cgcatcatcg ggacgaagga cgggaagctg gtggtgatca tcgtcccgtc
     1921 gtccaccctc attccctcag cgctcgcaag tcccatgacg aggaacgcca ttgcgatgcg
     1981 gtggtccagg tgggttgcga cagtgccgcc gccaagcggc gcgcgtccgg tgccgtgcac
     2041 gatgaggtcg tcgccctcga tctcgtggat aacaccggcg gcgtcgagcc cagcggcgac
     2101 ggccgcgagg cgatcggatt ccttgactct cagctcgtgc aggccgcgca tgcgcgtcga
     2161 gccgcgcgcg aaggatgccg ccaccgcgag caccggatac tcgtcgatca tcgacggcgc
     2221 ccgcgcggcg gggacgtcga caccgaacag gggacttgcg cgcaccttga ggtcggcgac
     2281 ggtctcgccg ccctcgtcgc gcgcgttggt ctgctcgatc tcggcgccca tctccaacag
     2341 ggtggtgatg agcccggtcc gcagcggatt cgtcatcacg ccctcgacga tgacctccga
     2401 tccgggcgtg atcagcgcgg ccacgagggg gaaggcggcc gaagacgggt ccgcgggcac
     2461 gaccacctcg gcgcctcgta gctccggatg gccctcgagc gatatggcgc ggccatcgcc
     2521 tccgtgcggc tcgaccgtga ccgtggcccc gaagtgacgc agcattcgct ccgtgtggtc
     2581 ccgcgtcgcc gcctgctcga cgacggtcgt gcgtccggga gagttgaggc ccgcgagcag
     2641 caccgcggac ttgatctggg ccgaggcggc aggggtttcg tagacgatcg ggatggtctc
     2701 gcgcgggccg cgcagcgtca ggggtacgcg cccgccctcg gcctcgctca ccacgttcgt
     2761 ccccatccgc acgagcggat cgaggatgcg gcgcatcggg cgcttgcgca gcgaggcgtc
     2821 gccgtcgaag gtcgccacga tcggatggct gccggcgacc cccatcatca agcgcgagcc
     2881 cgtgccggcg ttgccgaaat cgaggacgtc gcgcggctcg acgagaccgc cgatgccggc
     2941 cccgcgcacc cgccagcggc ccgccgcatc gtgcatgatg gcggcgccga gcgcctcgca
     3001 agcgcgggcg gtgcgcagca cgtcgtcgcc ctcgagcagg ccctcgattc gggtctcgcc
     3061 gatcgcaagc aggccgagga tcagcgaccg gtgcgagatc gacttgtcgc cgggaacccg
     3121 cacgcgcccc cgcagggccg agccaggcac ggccgtgacg ggagaggcct ctgcgccacc
     3181 gtgcgacacc ctcgacctcc gccctgtcat cccctgaagc gggcggtcgt taacacgggt
     3241 ggggggtgcc gtcatcagcg ccgacgcggc tcgcatttgt catttgacaa gggggcgacc
     3301 cgcgactaac gggagccctc ttccgaacac ccgacgaagt tgaaggctgt cacccgtggc
     3361 caaaccggaa ctgggcttga agcgtctgtg cgcgaactgc ggcgccaagt tctacgacct
     3421 gaacaaggac ccgatcgtct gcccgaagtg cgatacggtg tttcaggcag cgcagctcac
     3481 gcgagtcccg agcccggccg cagcccgcgc ccgtgatccc gaggaggaga ccgatgtcga
     3541 gccggccggc ccggagatcg tgtctctcga cgaggtcgag gcgagcgaga acgagaagga
     3601 cgtagtcgtg gccgaagacg acgtcgacat tgccgagacg acggacgaca ccttcctcga
     3661 ggaagaagag gagggcgagg acgacgtcac cgcgcttatc gacggcgaca tcgaggacga
     3721 cgaagaggct tgagtaagca ggggcgtccg actatagaga cgccctcccg ccaccctcgg
     3781 cggatccccc cgcggtcttg atcccgacac cgcgggtttg cgttggggcc atagctcagt
     3841 tgggagagcg cttgaatggc attcaagagg tcggcggttc gattccgcct ggctccacca
     3901 cgcacccgta gatagagggc gtgatccgcc cgggcgaaga atacgtcgtt attcccgaga
     3961 cttagcggcg cgcttctacc gtttcggcgg tctcttggcc cagagaccgc cattcccggc
     4021 ccgctttggc cggccgtctc cgagcgaaaa aacgtgcttc gtgtacggcg accggagaat
     4081 ggttcgcgga ctgcgtgctt gggtcagccg tcggtcgttc cttccggtcg agaaggcgat
     4141 cgc
//
LOCUS       DASQWN010000027         2133 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1294367, whole genome shotgun sequence.
ACCESSION   DASQWN010000027 DASQWN010000000
VERSION     DASQWN010000027.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2133)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2133)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2133
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1294367"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2132)
                     /gene="mobF"
                     /locus_tag="VE686_00550"
     CDS             complement(<1..2132)
                     /gene="mobF"
                     /locus_tag="VE686_00550"
                     /inference="COORDINATES: protein motif:HMM:NF041492.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MobF family relaxase"
                     /protein_id="HYY82970.1"
                     /translation="MSVAWAFAAPAEQATIWQAHRDAVHEAMTYLETIIGRARIGDGG
                     REGFEPGHVGWLAFDHHTARPTLTMAVQKDGQTVTEMVPVPVPGDPDLHTHVLVPNAV
                     FCDSGRVSALDTAQLQGAVKEVGALYQAHLAQHLRDRLSASVSLDPETGMARLDAIPD
                     PVRTHFSKRTLGGEEAARAYAKELGLDWDTLAPERRTGLLKAGTQGTAPGLDGTLREK
                     LRKDDMADFADWRRQADGLGWRYAGIETHGPPMPPLSPEERLQKAYEVALPWLETELD
                     RRAVVGVGEVRAAALRGLIAHGIEKSADIDTVTERFMAEGVRQHGHTTRLYWQEAEEP
                     RQAKLTTALHVSQERAFIALAREAAADRSDALSRDQARQAIQQSGLTFSGEQTEAIHR
                     LGEGGRLGVMIGAAGIRKTTSLQPLVSAWHEQARDVHGIALAWRQADELVDAGIPQQR
                     VKAISVFELAAAKGEIALSSKSVVVVDELGLLGTRQGLALLRLQQQHGFRMVWMGDPK
                     QLASIEAGPIIELSRRALGEEQVPEILTTRRQQSERERAIAGLFREGKAAAALAMKRE
                     DGTAELVAGGYREAVERVASLVKERLSANAGDPRYSLTVSAPTNADAHRLGVAIRQAR
                     RELGQVGPDRVRIKAVGQGGSEYPMAIATGDKVRLFASTRVQGERGSIGRNGSVLTVL
                     DADEAGMRVKNLKGREGRVDWKTLADEAG"
BASE COUNT          279 a          797 c          684 g          373 t
ORIGIN      
        1 cccgcctcat cggcgagcgt tttccagtcg acacgccctt cccgcccctt aagattcttt
       61 actcgcatcc cggcctcgtc ggcgtccagc acggtcagta ccgagccgtt gcggccgatg
      121 ctgccccgct cgccctgcac ccgcgtcgag gcgaacaggc gcaccttgtc gccggtggcg
      181 atggccatcg gatactcgct gcccccctgc cctaccgctt tgatgcggac gcggtcgggt
      241 ccgacctggc ccagctcgcg gcgcgcctgc cggatcgcaa cgccgagccg gtgcgcgtcg
      301 gcattggtcg gcgccgagac ggtgaggctg tagcgagggt ccccggcatt cgccgagagc
      361 cgctccttga ccagcgatgc gacgcgctcc accgcctcgc ggtagccgcc cgccaccagc
      421 tccgccgtgc cgtcctcgcg cttcatggcg agcgccgcgg cagcctttcc ctcgcggaac
      481 agcccggcga tggcccgctc gcgctcgctc tgctgccggc gcgtggtgag gatctccggt
      541 acttgttctt cccccagcgc gcggcgcgac agttcgataa tcgggcctgc ctcgatgctg
      601 gcgagttgct tgggatcgcc catccacacc atgcggaaac cgtgctgttg ctggagccgc
      661 agcagcgcca gcccctgccg ggtgccgagc aggccgagct cgtccaccac caccacggat
      721 ttcgaggaca gcgcgatctc tcccttcgcc gccgccagct cgaacacgct tatcgccttc
      781 acccgctgtt gcgggatgcc cgcgtccacc agctcgtcgg cctgtcgcca cgccagggcg
      841 atcccatgta cgtcgcgagc ttgctcgtgc caggcgctga ccagcggctg aaggctcgtc
      901 gtttttctga tacctgccgc gccgatcatc accccgagcc gcccgccttc gccgagccga
      961 tggatggcct cggtctgctc gcccgagaac gtgagccccg attgctgtat ggcctgcctg
     1021 gcctggtcgc ggctgagtgc gtcgcttcgg tcggcggcgg cctctctcgc cagcgcgatg
     1081 aacgctcgct cctgcgagac atgcagtgcc gtggtcagct tagcctgtcg cggctcctcg
     1141 gcttcctgcc agtagagccg cgtcgtatgg ccgtgctggc gcaccccttc ggccatgaag
     1201 cgctcggtca cggtgtcgat atcggcgctc ttctcaatgc catgcgcgat caagccgcgc
     1261 agcgcagcgg cgcgaacctc gccgaccccg accacggcgc gccggtccag ctccgtctcc
     1321 agccaaggca gcgcgacctc gtaggccttc tgcagccgtt cctccggaga gagcggcggc
     1381 atcggcggcc cgtgggtctc gataccggcg tatcgccaac cgagaccgtc cgcctgtcgt
     1441 cgccagtcgg cgaaatcggc catatcgtcc ttgcgcagct tctcccgcag cgtcccgtcc
     1501 agccccggcg ccgttccttg cgtgcccgct ttcagcagcc cggtgcgccg ctccggcgcg
     1561 agcgtgtccc agtcgaggcc gagctctttc gcataggcgc gtgccgcttc ctcgccgccc
     1621 agcgtgcgct tggagaagtg cgtgcggacc gggtcgggaa tggcgtccag ccgcgccatg
     1681 ccggtctccg ggtcgagcga gacggaggcg ctcaggcgat ctcggaggtg ctgcgccagg
     1741 tgcgcctggt agagtgcccc gacctccttc accgcgccct gcagctgcgc cgtatcgagg
     1801 gcgctgacgc ggcccgagtc gcagaacacg gcgttgggca cgaggacgtg cgtgtgcagg
     1861 tcaggatcac ccggcaccgg caccggaacc atctccgtga cagtctgccc gtctttttgc
     1921 accgccattg tcagtgtcgg tcgcgcggta tggtgatcaa aggcgagcca gccgacatgc
     1981 cccggctcga atccctctcg gccgccatcg ccgatgcggg cgcgaccaat gatggtctcc
     2041 agataggtca tggcctcgtg cacggcgtcg cggtgggcct gccagatagt ggcttgctcg
     2101 gctggcgcgg cgaaggccca agcgaccgac acg
//
LOCUS       DASQWN010000028         2294 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_599713, whole genome shotgun sequence.
ACCESSION   DASQWN010000028 DASQWN010000000
VERSION     DASQWN010000028.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2294)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2294)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2294
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_599713"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            174..1991
                     /gene="gcl"
                     /locus_tag="VE686_00555"
     CDS             174..1991
                     /gene="gcl"
                     /locus_tag="VE686_00555"
                     /EC_number="4.1.1.47"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014496650.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009028 - tartronate-semialdehyde synthase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glyoxylate carboligase"
                     /protein_id="HYY82971.1"
                     /translation="MTRMTAAQAAVLVMEKEGITSAFGVPGAAINPFYAAMREHGRIR
                     HILARHVEGASHMADGYTRAAPGNIGVCIGTSGPAGTDMITGLYAAAADSLPILCITG
                     QAPRAKLHKEDFQAIDIESIAKPVAKWAVTVREPGLVPRVFQQAFHVMRSGRPGPVLI
                     DLPIDVQMAEIEFDIDTYEPLPVYKPAASRRQIEKALDMLAEAEHPLIVAGGGVINAN
                     ASDLLVEFAEVTGVPVIPTLMGWGCIPDDHPLMAGMVGLQTSHRYGNATFLQSDFVLG
                     IGNRWANRHTGTIESYTKGRRFVHVDIEPTQIGRVFNPDYGIVSDAKAALALFVEVAR
                     ERKAAGRLRDFSDWAQSAEHRKRNMLRRSHYDQVPLKPQRVYQEMNEAFGRDTTYVTT
                     IGLSQIAGAQFLHVYEPRRWINCGQAGPLGWTLPAALGVRAADPDREIVALSGDYDFQ
                     FMIEELAVGAQHKLPYLHVVVNNSYLGLIRQAQRGFQMDFEVSLAFENINSENGEDVA
                     GYGVDHVAVAEGLGCKAVRVKSPNEFKEAFATARQLMEEHRVPVVLEFILERVTNVSM
                     GTEIHNVSEFEEVLCLDPSLTIDDVSGSVLRTKEPAPAE"
     gene            2137..>2294
                     /locus_tag="VE686_00560"
     CDS             2137..>2294
                     /locus_tag="VE686_00560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015342322.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxypyruvate isomerase"
                     /protein_id="HYY82972.1"
                     /translation="MPRFCANLTMLYGEHGFLDRFAAAATDGFKGVEYLFPYDFPKEE
                     LKERLERHG"
BASE COUNT          437 a          764 c          721 g          372 t
ORIGIN      
        1 gtcttggcag cccaaagcag atagcgatat ctaagcggac agagctcatt ttctatcaag
       61 gtgaatttga ggcacactgg ctcttcaact tcgatagatg gctgcgataa gccctcataa
      121 acgaggctat gtgtggccat acctgaccca gaagactcga gaaaggaaac acgatgacac
      181 gaatgactgc cgcacaagcc gccgttctgg tgatggaaaa ggagggcatc acaagcgcct
      241 ttggcgtccc cggcgcggct atcaatccgt tctatgcggc gatgcgcgag cacggccgca
      301 tccgccacat tctcgcccgt cacgtcgagg gcgcctcgca catggccgac ggctacaccc
      361 gcgccgcgcc gggcaacatc ggagtttgca tcggaacgtc cggtccggcc ggaacggaca
      421 tgatcaccgg tctctacgcc gccgccgccg actccctccc catcctgtgc atcacgggcc
      481 aggccccgcg cgccaagctg cataaggagg atttccaggc gatcgacatc gagtcgatcg
      541 ccaagccggt cgccaaatgg gccgtgacgg tgcgcgagcc aggcctcgtg ccgcgcgtct
      601 tccagcaggc gttccacgtc atgcgctcag ggagacccgg tccggtcctg atcgacctgc
      661 ccatcgacgt ccagatggcc gagatcgagt tcgacatcga cacgtatgaa ccgctgcccg
      721 tctacaagcc cgccgcgagc cggcgccaga tcgaaaaggc gctcgacatg ctcgccgagg
      781 cggagcaccc gctgatcgtc gcgggcggcg gcgtcatcaa cgcgaacgcc tccgaccttc
      841 tggtcgagtt cgccgaggtc acgggcgtcc cggtgatccc gacgctaatg ggctggggct
      901 gcatcccgga cgatcacccc ctcatggccg gcatggtcgg cttgcagacc agtcaccgct
      961 acggcaacgc caccttcctt cagtccgact tcgtcctcgg catcggcaac cgctgggcga
     1021 accgccacac gggcactatc gagagctaca cgaagggccg gcggttcgtg catgtggaca
     1081 tcgagccgac gcagatcggc cgcgtcttca acccggatta cggcatcgtc tccgacgcga
     1141 aggcggcgct cgcgctgttc gtcgaggttg cgcgggagcg gaaggcggcg gggcggctca
     1201 gggacttttc agactgggcg cagtccgccg agcatcgcaa gaggaacatg ctgcgccgca
     1261 gccactacga tcaagtgccg ctgaagcccc agcgcgtcta tcaggagatg aacgaggctt
     1321 tcggccgcga caccacctac gtgaccacga tcggcctctc gcaaatcgcc ggggcgcagt
     1381 tcctgcacgt ctatgagccg cgccgctgga tcaattgcgg gcaggccggt ccgctcggct
     1441 ggaccttgcc cgccgctctc ggcgtgcgcg ccgccgaccc ggatcgggag atcgtggccc
     1501 tgtcaggcga ctacgacttc cagttcatga tcgaggagtt ggcggtcggg gcgcagcata
     1561 agctccccta tctgcacgtg gtcgtgaaca actcctacct cggcttgatc cggcaggcgc
     1621 agcgcggctt ccagatggac ttcgaggtca gcctcgcctt cgagaacatc aacagcgaga
     1681 acggcgagga cgtcgccggc tacggcgtcg atcacgtcgc cgtcgccgag ggattggggt
     1741 gcaaggcggt gcgcgtcaaa agcccgaacg agttcaagga agcgttcgcc acggcgcgac
     1801 agctcatgga ggaacatcgg gtgccggtcg tgctcgagtt catcctcgag cgcgtcacca
     1861 acgtctctat gggcaccgaa atccacaacg tcagcgagtt cgaggaggtc ttgtgccttg
     1921 atccctcgct cacgatcgac gatgtctccg ggtcggttct gcggacgaag gagccggccc
     1981 cggccgagta gtgagaagag gggcggccgc ggccgtgcgg ctcgccccga ccttgcggct
     2041 aaagacgcat tccacgacac aagcctgctc ggccggagcg cgcctccacg acacagaccg
     2101 accgtggtcg tggagcaacg aaagcgggag acggacatgc ccagattctg cgccaacctg
     2161 acgatgctct acggcgagca cggcttcctc gaccgcttcg ccgccgccgc gaccgacgga
     2221 ttcaagggcg tcgagtacct gttcccctac gatttcccga aggaggagct caaggagcgg
     2281 ctcgagcgcc acgg
//
LOCUS       DASQWN010000029         2253 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_699103, whole genome shotgun sequence.
ACCESSION   DASQWN010000029 DASQWN010000000
VERSION     DASQWN010000029.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2253)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2253)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2253
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_699103"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            19..>2253
                     /locus_tag="VE686_00565"
     CDS             19..>2253
                     /locus_tag="VE686_00565"
                     /EC_number="1.2.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003599895.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004591 - oxoglutarate dehydrogenase
                     (succinyl-transferring) activity [Evidence IEA];
                     GO_function: GO:0030976 - thiamine pyrophosphate binding
                     [Evidence IEA];
                     GO_process: GO:0006099 - tricarboxylic acid cycle
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoglutarate dehydrogenase E1 component"
                     /protein_id="HYY82973.1"
                     /translation="MARQDLNEAFLQTSFLYGGNAAYVEDLYAQYTKDPASVNGQWRA
                     FFETLKDDRQIVVKNADGASWAKPGWPVVANGELVAALDGNWGEAERAVGDKIKAKAQ
                     GTGVELSPADVQQATRDSLRALMLIRSYRVRGHLHAKLDPLDLEPRGDHAELDPSHYG
                     FAEADWDRPIFLDHVLGLEFATIREIVALLERTYCQTLGVEFMHIADPAEKAWIQERI
                     EGADKEISFTREGKRAILNKLVEAEGFEKFLDLKYTGTKRFGLDGSEAMIPALEQIIK
                     RGGTLGVKDIVLGMAHRGRLNVLAQVMGKPHRAIFHEFKGGSFTPDDVEGSGDVKYHL
                     GASSDRAFDGNAVHLSLTANPSHLEIVDPVVLGKVRAKQDQLGDIVERIKVMPLLIHG
                     DAAFAGQGVVAECLGLSGLRGHRTGGSVHFIVNNQIGFTTNPRYSRSSPYPSDVAKMV
                     QAPIFHANGDDPEAVVFAAKVATEYRQKFHKPVVIDMFCYRRFGHNEGDEPAFTQPKM
                     YRKIRSHPTTLELYAQKLEAEGVVTPAELDEMKGAWRAKLEQEFEVAQAYKPNKADWL
                     DGRWAGLKAAREDADDPRRAQTGVSAETLAEIGRKITEVPGTVHLHRTIQRFLDNRKK
                     MIESGEGIDWATAESLALGTLLLEGHPVRLSGQDVERGTFSQRHCVLIDQEDETRYTP
                     LNNIRSGQARFEVINSMLSEEAVLGFEYGYSLSEPNALVLWEAQFGDFANGAQVVFDQ
                     FISSG"
BASE COUNT          398 a          790 c          740 g          325 t
ORIGIN      
        1 cccccgagtc gaaccgtcat ggcacgccag gatctcaacg aagccttcct gcagacctca
       61 ttcctgtacg gcggcaacgc cgcctacgtg gaggatctct acgcgcagta caccaaggac
      121 ccggcctcgg tgaacgggca gtggcgggcg ttcttcgaga cgctgaagga cgaccggcag
      181 atcgtcgtca agaacgccga cggggcctcc tgggcgaagc ccggctggcc cgtcgtcgcg
      241 aacggcgagc tcgtggcggc gctcgacggc aactggggcg aggcggaacg cgcggtcggg
      301 gacaagatca aggccaaggc gcagggcacc ggcgtcgagc tcagcccggc ggacgtgcag
      361 caggcgaccc gcgactcgct ccgcgcgctc atgctgatcc gctcctaccg ggtgcgcggc
      421 catctgcacg ccaagctcga tccgctggat ctcgagccgc gcggcgacca tgccgagctc
      481 gacccgtcgc actatggctt cgcggaggcg gactgggacc gcccgatctt cctcgaccac
      541 gtgctcgggc tcgagttcgc caccatccgc gagatcgtgg cgctgctcga gcgcacgtac
      601 tgccagacgc tgggcgtcga gttcatgcac atcgccgatc cggccgagaa ggcctggatc
      661 caggagcgca ttgagggcgc cgacaaggag atcagcttca cccgcgaggg caagcgcgcg
      721 atcctcaaca agctcgtcga ggcggagggc ttcgagaagt tcctcgacct caagtacacg
      781 ggcaccaagc gcttcggcct cgacggctcg gaggcgatga tcccggcgct cgagcagatc
      841 atcaagcgcg gcggcaccct cggggtgaag gacatcgtcc tcggcatggc ccatcggggt
      901 cgtctgaacg tgctggccca ggtaatgggc aagccccacc gcgccatctt ccacgagttc
      961 aagggcggct cgttcacgcc cgacgacgtg gaagggtctg gcgacgtcaa gtaccacctc
     1021 ggcgcctcct cggaccgcgc cttcgacggc aacgccgtcc acctgtcgct gaccgcgaac
     1081 ccgtcgcacc tcgagatcgt cgatcccgtg gtgctgggca aggtgcgcgc caagcaggac
     1141 cagctcggcg acatcgtcga gcgcatcaag gtgatgccgc tcctgatcca tggcgacgcc
     1201 gccttcgccg gccagggcgt cgtcgccgag tgcctaggcc tctcgggcct gcgcggccac
     1261 cggaccggcg gctcggtgca cttcatcgtc aacaaccaga tcggcttcac gacgaacccg
     1321 cgctactcgc gttcgtctcc ctatccctcc gacgtcgcca agatggtgca ggcgccgatc
     1381 ttccacgcca acggggacga cccggaggcc gtggtcttcg ccgccaaggt ggccaccgag
     1441 taccggcaga agttccacaa gccggtcgtc atcgacatgt tctgctaccg ccgcttcggc
     1501 cacaacgagg gcgacgagcc ggccttcacg cagccgaaga tgtaccggaa gatccggtcg
     1561 catccgacga cgctcgagct ctacgcgcag aagctcgagg ccgagggtgt cgtgacccct
     1621 gccgaactcg acgagatgaa gggcgcctgg cgggcgaagc tcgagcagga gttcgaggtc
     1681 gctcaggcct acaagcccaa caaggcggac tggctcgacg gccgctgggc cggcctcaag
     1741 gccgcccgcg aggacgccga cgacccgcgt cgtgcccaga ccggcgtctc ggccgagacc
     1801 ctggcggaga tcgggcgcaa gatcaccgag gtgccgggga cggtccacct gcaccggacg
     1861 atccagcgct tcctcgacaa ccgcaagaag atgatcgaga gcggcgaagg catcgactgg
     1921 gcgacggccg agagcctcgc gctcggcacg ctgctcctcg aggggcaccc cgtccgcctg
     1981 tccggccagg acgtcgagcg cgggacgttc tcccagcgcc attgcgtgct gatcgaccag
     2041 gaggacgaga cccgctacac gccgctcaac aacatccgca gcggccaggc gcgcttcgag
     2101 gtcatcaact cgatgctgtc cgaggaggcg gtgctcggct tcgagtacgg ctactccctc
     2161 tcggagccga acgctctcgt gctgtgggaa gcgcagttcg gagacttcgc caacggcgcc
     2221 caggtcgtct tcgaccagtt catctcgtcg ggc
//
LOCUS       DASQWN010000030         3006 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1096221, whole genome shotgun sequence.
ACCESSION   DASQWN010000030 DASQWN010000000
VERSION     DASQWN010000030.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 3006)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3006)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3006
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1096221"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(33..108)
                     /locus_tag="VE686_00570"
     tRNA            complement(33..108)
                     /locus_tag="VE686_00570"
                     /product="tRNA-Ile"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(73..75),aa:Ile,seq:cat)
     gene            complement(249..1742)
                     /gene="guaB"
                     /locus_tag="VE686_00575"
     CDS             complement(249..1742)
                     /gene="guaB"
                     /locus_tag="VE686_00575"
                     /EC_number="1.1.1.205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019905402.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003938 - IMP dehydrogenase activity
                     [Evidence IEA];
                     GO_process: GO:0009152 - purine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IMP dehydrogenase"
                     /protein_id="HYY82974.1"
                     /translation="MARIVADRLIEGLTFDDVLLRPGHSIVLPADVDIKTKLTRSIGL
                     NLPIIASAMDTVTEAAMAIAMAQNGGLGVIHRNLEPDAQAEQVRQVKKYESGMVMNPI
                     TIHPDETLSAALALMKRHGISGIPVVERGPNGANGKLVGILTNRDVRFATHPDQPVAE
                     LMTKERLITVREGVTQDEAKRLLHQFRIEKLLVVDEHYRCIGLITVKDIEKQVTYPHA
                     AKDEQGRLRVAAATTTGEGGFERAERLIDAGCDLIVVDTAHGHSAKVLETVTRVKKLS
                     NAVQVIAGNVATRDGTKALIDAGADAVKVGIGPGSICTTRIVAGVGVPQLTAILEACE
                     AASSGEVPVIADGGIKFSGDLAKALAAGASCAMVGSLLAGTDEAPGEVFLYQGRSYKA
                     YRGMGSVGAMARGSADRYFQAEVRDALKLVPEGVEGQVAYKGPVSGVLHQLAGGLRAA
                     MGYVGGASLEEFRERAQFIRITNAGLRESHVHDVTITRESPNYPGRA"
     gene            1931..2098
                     /locus_tag="VE686_00580"
     CDS             1931..2098
                     /locus_tag="VE686_00580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015933020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY82975.1"
                     /translation="MEYVVGVVALLAVLFLVGRGTPLHAWPLIIAATLAVVVAVVLLE
                     RGGYWPASWRR"
     gene            complement(2172..2417)
                     /locus_tag="VE686_00585"
     CDS             complement(2172..2417)
                     /locus_tag="VE686_00585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015928073.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY82976.1"
                     /translation="MIRTLVLGAALATLTSAAIAQPVYVQRRAPAYVESYEAPYSPAY
                     GRHAQVCQRWCPEDASPCDPVNFKIADGRCRPTLFYR"
     gene            2653..>3006
                     /locus_tag="VE686_00590"
     CDS             2653..>3006
                     /locus_tag="VE686_00590"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY82977.1"
                     /translation="MKRDIFSMAALWAALILTGPAAAQGVVVPTPGSAPTVAGPNSTN
                     PSAAASGGLGATNPSAASSAVTTPNALNPSGTSSTFAPTSIDGTSRVLPRVAPTNRVV
                     RERARTRPQRRQARNH"
BASE COUNT          432 a         1036 c         1051 g          487 t
ORIGIN      
        1 ccgcaacgtc ccacccaagt ccctgaagga tatggtgggc cctgcaggac tcgaacctgc
       61 aaccagaccg ttatgagcgg ccggctctaa ccattgagct acgggcccca cagggcttgc
      121 gcttcttagc cgacgatagc cgtgacgtca tccgcagggc cgcgcaggct cggatcaccg
      181 acgggcgggg ttcgccgcag gatctggcgg tgtcgcaatg accgcgtcgg acctgcgcct
      241 ctgccggctc aggcgcggcc cgggtagttg gggctttcgc gggtgatggt gacgtcgtgg
      301 acgtggctct cgcgcaggcc cgcattggtg atgcggatga actgggcgcg ctcccggaac
      361 tcctcgaggc tcgcgccgcc tacgtagccc atcgcggcgc gcaggccccc ggcgagctgg
      421 tgcaacacgc ccgagaccgg ccccttgtag gcgacctgac cctcgacgcc ctcgggcacg
      481 agcttcaggg cgtcgcggac ctcggcctgg aagtagcggt cggcggagcc acgggccatg
      541 gcgccgacgg agcccatgcc gcggtacgcc ttgtaggagc gtccctggta caggaacacc
      601 tcgcccggcg cctcgtcggt cccggcgagg agcgagccga ccatggcgca ggaggcgccg
      661 gccgcgagag ccttggcgag atcgcccgag aacttgatgc cgccgtcggc gatgaccggc
      721 acctcccccg aggacgcggc ctcgcaggcc tcgaggatgg ccgtgagctg cggcacgccg
      781 accccggcga cgatgcgagt ggtgcagatc gagcccgggc cgatgccgac tttgacggcg
      841 tcggcgccgg cgtcgatcag cgccttggtg ccgtcgcgcg ttgccacgtt accggcgatc
      901 acctgcacgg cgttggacag cttcttcacg cgcgtgacgg tctcgaggac cttggccgag
      961 tgaccgtgcg ccgtgtcgac gacgatgagg tcgcagccgg cgtcgatgag gcgctcggcg
     1021 cgctcgaagc cgccctcccc cgttgtcgtg gcagcggcga cgcgcagccg gccctgctcg
     1081 tccttggcgg cgtgcggata ggtgacctgc ttctcgatgt ccttgacggt gatgaggccg
     1141 atgcagcggt agtgctcgtc gacgacgagc agcttctcga tgcggaactg gtgcagcagg
     1201 cgcttcgcct cgtcctgcgt caccccctcg cgcaccgtga tgaggcgttc cttcgtcatc
     1261 agctcggcga cgggctggtc ggggtgagtg gcgaagcgca cgtcgcggtt cgtcaggatc
     1321 ccgacgagct tgccgttggc gccgttcggc ccgcgctcga ccaccggaat ccccgagatg
     1381 ccgtgacgct tcatgagcgc cagcgcggcc gaaagcgtct cgtccgggtg gatggtgatg
     1441 gggttcatca ccatgcccga ctcgtacttc ttgacctgcc gcacctgctc ggcctgggcg
     1501 tccggctcga ggttgcgatg gatgacgccg aggccgccgt tctgcgccat ggcgatggcc
     1561 atggcggctt ccgtcacggt gtccatggcg gacgcgatga tgggcaggtt caacccgatc
     1621 gagcgggtga gcttggtctt gatgtcgaca tcggcgggca gcacgatgga atgcccgggc
     1681 cgcagaagca cgtcatcgaa ggtcaagcct tcgatgagac gatcggcgac gatgcgggcc
     1741 atggccaact ccggatgtga ggagacgcgc cctgccgcta cgagtcgcgg cagacgcatg
     1801 agttggcggc ggtcggtagc acgtcatgcg ccaaagcgcc aaaggattcg tcggcagggc
     1861 gcagggcggc gctctctggc gcctgccgcc ggacttcgct actcccctct cggcacgagg
     1921 ggagatcgca atggaatacg tcgtcggcgt cgtcgcgctt ctcgcggtgc tgttcctcgt
     1981 tgggcgcggg acgcccctgc acgcctggcc cctgatcatc gccgcgacgc tcgcggtcgt
     2041 cgtcgcggtc gtgctgctcg aacgcggcgg ctactggccg gcctcttggc gccgttagat
     2101 caggcgccgc tgaacgcggc ccccgtccga cgacaatctt gcctcggacg gctgcctccg
     2161 gcctcagccg ctcagcggta gaacagggtc gggcggcagc ggccgtcggc gatcttgaag
     2221 ttgacgggat cgcacgggct cgcgtcctca gggcaccagc gctggcacac ctgggcgtgg
     2281 cgtccgtacg cgggcgagta cggcgcctcg tagctttcga cgtaggcagg agcgcggcgc
     2341 tgcacgtaga ccggctgcgc gatcgcggcg gaggtcagcg tcgccagcgc ggcgccgagg
     2401 acgagggttc tgatcatcgg tcgtggctct tttcggataa gcacgagttg cagggcgtat
     2461 cccccacccc tgaccgtcaa cgcagtagcg gctctccggg tccacgacaa tggtcaagct
     2521 tggccgagac ttctggtcgc ggcaactggg cgatgccgtc ccgaagagca tgcgggcttc
     2581 cgccgagtct tggcgatgga ccaaatgctc cgtcgcgcgt tcactccgcg gtgttggacg
     2641 gagggccggg ccatgaagcg tgacatcttc tccatggccg cgctgtgggc cgcgctcatc
     2701 ctcacgggtc ccgcagcggc gcaaggcgtc gtcgtgccga cccctggctc agcgccgacg
     2761 gtcgcgggcc cgaattccac gaacccctcc gccgccgcct cgggcgggct cggcgccacg
     2821 aaccccagcg ccgcctcgtc ggccgtcacc acccccaatg cgctcaaccc gagcggaacc
     2881 tcgtcgacct tcgcgccgac ctccatcgac ggcacgagcc gcgtgctgcc tcgagtcgcg
     2941 cccacgaacc gagtggtgcg cgaacgcgcc cgcacccgtc cccagcggcg gcaggcgcgt
     3001 aaccat
//
LOCUS       DASQWN010000031         2029 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_895653, whole genome shotgun sequence.
ACCESSION   DASQWN010000031 DASQWN010000000
VERSION     DASQWN010000031.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2029)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2029)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2029
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_895653"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..637)
                     /locus_tag="VE686_00595"
     CDS             complement(<1..637)
                     /locus_tag="VE686_00595"
                     /inference="COORDINATES: protein motif:HMM:NF012334.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HYY82978.1"
                     /translation="MLRGVGGELVDDDGEAERHLGRDHHVLARERHAPAVDPRLAVDH
                     VVDERVLGFRRIGCAGPLRLAERRKRRHGFPRGAPVASVAGDPSEMTFDFADTRVVVA
                     GGSRGIGRSIALAFAQAGANVSICARGAEALAAADAEIGRHARTHHAAVCNLADSEAI
                     ARYVPEAAAALGGIDVLINNASGFGVGDDDAGWDASTSVDIMATVRASRAAV"
     gene            712..885
                     /locus_tag="VE686_00600"
     CDS             712..885
                     /locus_tag="VE686_00600"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY82979.1"
                     /translation="MVSAPARQGFGTALTRTTAEGELAGTIRTDYQPGGMREIRIPLE
                     MNASAYERVPELA"
     gene            complement(899..1534)
                     /locus_tag="VE686_00605"
     CDS             complement(899..1534)
                     /locus_tag="VE686_00605"
                     /inference="COORDINATES: protein motif:HMM:NF019428.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TadE/TadG family type IV pilus assembly protein"
                     /protein_id="HYY82980.1"
                     /translation="MSAGDDGRRRRRRSFRRDERGTTAVEFGLIGGTLILTLMGIVDF
                     ANAYFQWNRAAKAVHLGVRLASVSDPVSSDLKTYDGTSSTVFPGDDMPAFQRVCTGAT
                     ASCTNGTYDATAMNTLVYGRGNTACPATPGPIPGMCSLFPAIRPQNVVVEYLHTGLGY
                     AGRPGGPVPTITLRLTGLSYQFVVLNGLLRYTPLTMSGLSATATAEDMAGR"
     gene            complement(1521..>2029)
                     /locus_tag="VE686_00610"
     CDS             complement(1521..>2029)
                     /locus_tag="VE686_00610"
                     /inference="COORDINATES: protein motif:HMM:NF019428.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="TadE/TadG family type IV pilus assembly protein"
                     /protein_id="HYY82981.1"
                     /translation="RPRRGRGLRLVLRAWRDERGAAAIEAAAALPFLVALGAGLFELG
                     GAFYKYELMQTGIRDGARYLARMADPSASAAVTAAKNLAVTGAISGTPAARVTGWQTS
                     HLQITYVQTANPADGTTGLRQYRGGANLTTIRVASAMPYTGLGLLSAFGLGAVTIRAA
                     HEERYVGW"
BASE COUNT          284 a          711 c          766 g          268 t
ORIGIN      
        1 gcacggcggc gcggcttgcc cgcacggtcg ccatgatatc gacgctcgtg ctcgcatccc
       61 agcccgcgtc gtcgtccccg acgccgaacc cgctcgcgtt gttgatgagc acgtcgatgc
      121 cgccgagcgc cgccgcggcc tcgggcacgt accgcgcgat ggcctcgctg tcggcgaggt
      181 tgcagacggc cgcatggtgc gtgcgcgcgt ggcgaccgat ctcggcatcg gccgccgcga
      241 gcgcttccgc gccgcgggcg cagatcgaca cgttggcgcc ggcttgcgcg aacgccaacg
      301 cgatgctgcg cccgatgccg cggcttccgc ccgccacgac gacccgggtg tcggcgaaat
      361 cgaaagtcat ctccgaggga tctccagcga cgctcgcgac gggagcgcct cgtgggaaac
      421 cgtgccgccg tttgcggcgc tccgcaaggc gtagcgggcc ggcgcagccg atgcgccgaa
      481 agccgaggac gcgctcatcc acgacgtggt caaccgcgag gcgcggatct acggcgggcg
      541 cgtgacgctc gcgggcgagg acgtggtggt cccgcccaag gtggcgctcg gcctcgccat
      601 catcgtccac gagctcgcca ccaacgccgc gaagcacggc gccctgtcga ccacggaggg
      661 ccgctccggg acggcaccct cgaggtcgcg tgggatgaga gcgacggccc cgtggtgtcg
      721 gccccggcgc ggcagggctt cggcacggcg ctgacgcgca cgacggctga aggcgagctc
      781 gccgggacca tccgcacgga ctaccagccc ggcggcatgc gcgagatcag gatcccgctc
      841 gagatgaacg cctcggccta cgagcgcgtg cccgagctcg cctgagcggg gcagggacct
      901 agcggcccgc catgtcctcg gcggtggcgg tcgccgacag gcccgacatc gtcagcggcg
      961 tgtatctgag caggccgttg agcacgacga actggtagct gagcccggtg agccgcagcg
     1021 tgatggtggg cacgggcccg cccggccggc cggcgtagcc gaggcccgtg tgcaggtact
     1081 cgaccacgac gttctgcggg cggatggccg ggaacaggct gcacatgccc gggatggggc
     1141 cgggagtggc cgggcaggcg gtgttgccgc ggccgtagac cagcgtgttc atggccgtcg
     1201 cgtcgtaggt gccgttggtg cacgaggccg tcgccccggt gcagacgcgc tggaaggccg
     1261 gcatgtcgtc gcccgggaag accgtcgagg aggtcccgtc gtaggtcttg agatcggacg
     1321 agacggggtc cgagaccgat gcgagccgca ctccgaggtg cacggccttg gcggcccggt
     1381 tccactggaa ataggcgttg gcgaagtcga cgatgcccat gagcgtcagg atcagcgtcc
     1441 cgccgatcag gccgaactcg actgccgtcg tgccgcgctc gtcgcgccgg aacgacctgc
     1501 ggcggcggcg acgtccgtcg tcaccagccg acatagcgtt cctcatgggc tgcgcggatc
     1561 gtcaccgcgc cgaggccgaa cgcgctcaac agccccagcc ccgtgtacgg catcgcgctc
     1621 gcgacgcgga tggtggtgag gttcgcgccg ccccggtact ggcgcaggcc ggtggtcccg
     1681 tcggccggat tggccgtttg gacgtaggtg atctggaggt gcgaggtctg ccagcccgtc
     1741 acgcgtgcgg ccggggtccc gctgatggcc ccggtaacgg cgaggttctt ggcggccgtg
     1801 accgcggcgg aggcggacgg gtccgccatc cgcgcgagat agcgcgcgcc gtcccggatc
     1861 ccggtctgca tgagctcgta cttgtagaac gcgcccccga gctcgaagag gccggcgccc
     1921 agcgcgacga ggaacggcag ggcggcagcg gcctcgatgg cggcggctcc gcgctcgtcg
     1981 cgccaagcgc gcagcacgag gcgcagcccc cgcccgcgcc gggggcgcg
//
LOCUS       DASQWN010000032         2911 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1295108, whole genome shotgun sequence.
ACCESSION   DASQWN010000032 DASQWN010000000
VERSION     DASQWN010000032.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2911)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2911)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2911
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1295108"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..318)
                     /locus_tag="VE686_00615"
     CDS             complement(<1..318)
                     /locus_tag="VE686_00615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018042526.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inositol monophosphatase family protein"
                     /protein_id="HYY82982.1"
                     /translation="MPDPSPDTAARLLPVMREAARAAGALAFDHFRHGGKTSARIWSK
                     HGGSPVTEADMLVDRFLKERLEAALPEAAWLSEETIDDPVRLERRLVWIVDPIDGTRA
                     FLGG"
     gene            547..1038
                     /locus_tag="VE686_00620"
     CDS             547..1038
                     /locus_tag="VE686_00620"
                     /inference="COORDINATES: protein motif:HMM:NF039656.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6101 family protein"
                     /protein_id="HYY82983.1"
                     /translation="MTSMTGAVRVAADGPGSPIQILPHLVATRSLDGAVTMPGAGTAN
                     AAGLALKVDPNTDGFLVEVVDRDGTMLVRLGPFDQDDIVAVWRALGASSGLPLMVERP
                     DGGLDAPYAQVGPLPLGAIRIRRRHGLLNGRRPRFLVRRRTGRLPPRPRVFRGDELFS
                     HNR"
     gene            complement(1042..1983)
                     /gene="ubiA"
                     /locus_tag="VE686_00625"
     CDS             complement(1042..1983)
                     /gene="ubiA"
                     /locus_tag="VE686_00625"
                     /EC_number="2.5.1.39"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015927117.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008412 - 4-hydroxybenzoate
                     octaprenyltransferase activity [Evidence IEA];
                     GO_process: GO:0006744 - ubiquinone biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxybenzoate octaprenyltransferase"
                     /protein_id="HYY82984.1"
                     /translation="MVIEIDRALPDAIRGHWVDRHAPASLRPYLRLARIERPIGWWLL
                     LLPCWWSAALAAIATDRPYPDPLHCVLFLIGAVAMRGAGSTYNDIVDRDLDGRVERTR
                     DRPLPSGQVTVTRAVAFLGLQALIGLAVLLQFNRFAILTGIASLGIVAAYPFMKRVMW
                     IPQLVLGLAFAWGGLMGWAAAVGSLAAAPIALYLAAVAWTIGYDTIYALQDIEDDETA
                     GIKSSALLFGEHVRIAVAVFYALACALLLGALILAEAGLVAYAGAAVFAVHLAWQVAR
                     IDGRDGAVALATFRSNRDAGLILFAALSLDAWAYAGA"
     gene            complement(2040..2549)
                     /locus_tag="VE686_00630"
     CDS             complement(2040..2549)
                     /locus_tag="VE686_00630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019906944.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY82985.1"
                     /translation="MPAFSFRPLALRFAMAGALAGVAGLAATPATAQNAACQEGGKLM
                     NQRQAIVAQLSKLGSKKIDPRAACPLFGKLVSNGTAAIKWMDTNKDWCSIPDPFVENF
                     KGDHAKATELRGKACAAAAQVQAMEKKARQAQQEGGPGGGGPGAGGAGGMLGGPGLTG
                     SFKLPQGAL"
BASE COUNT          469 a         1021 c         1035 g          386 t
ORIGIN      
        1 gccgccgaga aacgcccgcg tgccgtcgat cggatccacg atccagacga gccgccgctc
       61 gaggcggacc ggatcgtcga tggtttcctc ggacagccac gcggcctccg gcagcgccgc
      121 ttcgagccgc tccttgagga aacggtcgac gagcatgtcg gcttccgtaa cgggagagcc
      181 gccgtgcttc gaccagatgc gcgccgacgt cttcccgccg tgccggaaat ggtcgaacgc
      241 aagcgccccc gccgcgcgcg cggcctcacg catgacggga agaagtcgag ctgcggtgtc
      301 gggagaggga tcgggcatgc ggtcgcgatt cggggggaga gccagagtgc aatgtggggt
      361 gttccggtgc ggaacgcacg ccatgcaaca gcgacagcaa gcttttgttc ggcatggcgc
      421 gcggaaacgc cagcttaacc caatgcttta agcgctttcc gaccgctcgg cgccatgatg
      481 agccatcaac ccgagcggtc cgctagaggc cgccgggcgc cgaacagggc gtcgacagat
      541 atggccatga cctcgatgac cggggccgtt cgcgtcgcag cggacggtcc cggttccccg
      601 atccagattc tcccccacct ggtcgcaacg cgcagccttg acggcgcggt gaccatgccg
      661 ggcgccggaa ccgccaatgc ggccgggctc gccctcaagg tggaccccaa caccgacggc
      721 ttcctcgtcg aggtggtgga ccgcgacggc accatgctgg tccggctcgg ccctttcgat
      781 caggacgaca tcgtcgcggt gtggcgggcg ctcggcgcct cgtcgggcct gccgctcatg
      841 gtcgagcggc cggacggcgg cctcgatgcg ccgtacgcgc aggtcggacc gctcccgctc
      901 ggcgccattc gcatccgccg ccgtcacggg ctcttgaacg ggcgccggcc gcggttcctc
      961 gtccgccgca ggaccggacg cctgccgccc cgcccgcgcg tgttccgcgg cgacgagctt
     1021 ttctcccaca accgctgacg tctacgcccc ggcgtacgcc cacgcgtcga ggctaagcgc
     1081 cgcaaacagg atcagccccg catcgcggtt ggatcggaac gtcgcgagcg ccacggcccc
     1141 gtcgcggccg tcgatgcgcg ccacctgcca cgcgaggtgg accgcgaaca ccgccgcccc
     1201 cgcgtaggcg acgagacccg cttccgcgag gatgagcgcg ccgaggagaa gcgcacaggc
     1261 gagggcgtag aagacagcaa ccgcgatccg gacatgctcg ccgaagagca gcgccgacga
     1321 cttgatgccg gcagtctcgt cgtcctcgat gtcctgcagc gcgtagatgg tgtcgtagcc
     1381 gatcgtccac gccacggcgg cgagatagag cgcgatcggc gcggccgcga ggctcccgac
     1441 ggcggcggcc cagcccatga gcccgcccca cgcgaaggcg agcccgagca cgagctgcgg
     1501 aatccacatc acccgcttca tgaacgggta cgcggcgacg atgccgagcg aagcgatgcc
     1561 ggttaagatc gcgaaccgat tgaactggag caggacggcg aggccgatca gggcctgcag
     1621 ccccaggaac gcgacggcgc gcgtcaccgt cacctggcct gagggcaggg ggcggtcccg
     1681 cgtccgctcg acgcggccgt cgaggtcgcg atcgacgatg tcgttgtagg tcgagccggc
     1741 accgcgcatc gcgaccgcgc cgatcaggaa gagaacgcag tgcagcgggt cgggataggg
     1801 ccggtccgtg gcgatggcgg caagcgcggc cgaccaccag cacggcagca gcaggagcca
     1861 ccagccgatc gggcgctcga tgcgggcgag ccgcagatac ggcctgagcg acgcgggcgc
     1921 gtgccgatcg acccaatggc cgcgaatagc gtccgggagc gccctgtcga tttcgatcac
     1981 cacgtcggac tgggacctaa acgcctggcg agcggtccgc ggcccctctc aagcgagcct
     2041 tacagcgcgc cttgcggcag cttgaaggat ccggtcagtc ccgggccacc gagcatgccg
     2101 cccgcgccac cagcgcccgg accgccgcca ccggggccgc cttcctgctg cgcctggcgc
     2161 gccttcttct ccatggcctg aacctgcgcg gcggccgcgc acgccttgcc gcgcagctcc
     2221 gtcgccttgg cgtgatcgcc cttgaagttc tcgacgaagg ggtcggggat cgagcaccag
     2281 tccttgttcg tatccatcca cttgatcgcg gcggtgccgt tcgagacgag cttgccgaac
     2341 agcgggcagg ccgcgcgagg atcgatcttc ttgcttccga gcttggacag ttgcgccacg
     2401 atggcctggc gctggttcat gagcttgccg ccttcctggc aggcggcgtt ctgtgccgtc
     2461 gcgggagtgg ccgcgaggcc ggcaacgccc gcgagggcgc ccgccatcgc aaaacgcagg
     2521 gcgagcggac ggaacgagaa ggcgggcatt ctggacgtcc ttggccggga gcgcggcacg
     2581 cggcgcgcgc gtcgttgcct agcaggtcgg ggcatcgaag caaagcgcag cgctgtcgcg
     2641 gaccccgtcc accccacgct ttcgagaggg cacgcggcgc tcggaacgaa gccggaccgg
     2701 cccgagtttg agccgcaggc ggctctcgag caggccgacc agggccagag gaggacgaca
     2761 tggcgcgtgg agggcgcatg cgcggcgggt acggcggcga aggctacagc aactacgggc
     2821 gcgactatgg ccgcggagcg cagggcggag gcgccgaggg gcccgccttc ggcgactacg
     2881 gcagcctgcc gtccggggcc gagcggcgct a
//
LOCUS       DASQWN010000033         2647 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_997391, whole genome shotgun sequence.
ACCESSION   DASQWN010000033 DASQWN010000000
VERSION     DASQWN010000033.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2647)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2647)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2647
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_997391"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..666)
                     /locus_tag="VE686_00635"
     CDS             complement(<1..666)
                     /locus_tag="VE686_00635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009210440.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HYY82986.1"
                     /translation="MTAGPILEVEGLSVDIATAGGTLHAVRDLSFTVNRGETLCLVGE
                     SGCGKSMTALSIMDLLPRAATRRARRLSFDGQDLSKGRGVEAVRGNRMTMIFQEPMTA
                     LNPAYTIGDQLTEGYLRHKGGAGSAARERAVLLLEKVGIASAGERLRQYPHQLSGGLR
                     QRVMIAMALMCGPDLVIADEPTTALDVTIQAQILRLLGDLQKELGIALVLITHDLGVV
                     ARLA"
     gene            complement(663..1568)
                     /locus_tag="VE686_00640"
     CDS             complement(663..1568)
                     /locus_tag="VE686_00640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019402430.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HYY82987.1"
                     /translation="MAIDRLTLPEPLDVLEPTAGARLRGRLFKHTSLVFGLGIVGLVA
                     LLALCAPLIAPHDPYAQDLARRTIPPVWYAKGSWEHVFGTDNLGRDYFSRTLYGARIS
                     LLIGVSVMLISGVIGTTMGLLAGYFGGKVDLAVTFLVTTRLAMPVILVALAVVALLGG
                     SLTVVILTLGLLKWDRFAVVMRSATQQTRSLDYVAAAQAAGASTARVILGEVLPNIAP
                     HLIVVATLEAASAILLEAALSFLGLGVQPPLPSWGLMIAEAKAYMFFSFWLIAIPGTA
                     LAVLVFGINLAGDGLRDALAPEGRT"
     gene            complement(1568..2485)
                     /locus_tag="VE686_00645"
     CDS             complement(1568..2485)
                     /locus_tag="VE686_00645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012321300.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HYY82988.1"
                     /translation="MLAFVLKRLGLALLVALTVSLISFTLLRLSGDVASAIAGEGARA
                     EDIELVRKTYGLDRPLVVQYLDWLWRTVRGDFGQSLYFKTDVIGLVIEKLPTTLWLGL
                     FSILFALAVSIPLGVLAAVFANSWIDRLALGIAVFGQALPNFFFALILIMLFSIQLRW
                     LPVSGSGTWAHFVMPTIALGYYVAPAFMRLTRAGMVEVLSADYIRTARAKGLPARTVI
                     FKHALRNAVVPVVALAAVQLGFLLGGSVVIETIFALDGLGFLAYESISHRDFPVTQAV
                     VMLLSVFYVLLTLAADIANAWLDPRMRVA"
BASE COUNT          492 a          854 c          975 g          326 t
ORIGIN      
        1 cgcgaggcgc gcgacgacgc cgaggtcgtg tgtgatcagc acgagcgcga tgccgagctc
       61 cttctgcaga tcgccgagaa gccgcaggat ctgcgcctgg atggtgacgt cgagcgccgt
      121 ggtgggctcg tcggcgatga cgaggtcggg cccgcacatg agggccatgg cgatcatcac
      181 gcgctggcgc aggccgccag agagctgatg cgggtactgg cgcagacgct cgccggccga
      241 cgcgatgccg accttctcga ggagcaaaac cgccctttcg cgtgcggcgg acccggcgcc
      301 gcccttgtgg cgcaggtacc cctcggtgag ctggtccccg atggtgtagg cggggttcag
      361 cgccgtcatg ggctcctgga agatcatggt catgcggttg ccgcgcaccg cctcgacacc
      421 cctccccttc gagaggtcct ggccgtcgaa ggacaggcgc cgcgcgcggc gcgtcgcggc
      481 ccgcggtagc aggtccatga tcgacagggc cgtcatggac ttcccgcatc cggactcgcc
      541 gacgaggcac agcgtctcgc cgcggttcac cgtgaaagaa aggtcgcgta cggcgtggag
      601 cgtgccgccc gcggtggcga tgtccacgga caggccctcg acctcgagga tcgggcccgc
      661 cgtcatgtcc gcccctccgg tgcgagcgcg tcgcgcaggc cgtcgccggc gaggttgatg
      721 ccgaagacca ggacggcgag cgcggtgccc gggatggcga tgagccagaa cgagaagaac
      781 atgtaggcct tggcttcggc gatcatgagg ccccaggacg gcagaggcgg ctgcacgccg
      841 aggccgagga acgacagcgc cgcctcgagc aggatggcgc tcgcggcctc gagcgtcgcg
      901 acgacgatga gatggggcgc gatgttgggc agcacctcgc cgagaatgac ccgcgccgtc
      961 gaggcgcccg ccgcctgcgc ggcggcgacg taatcgaggg agcgcgtctg ctgcgtggcg
     1021 ctgcgcatga cgaccgcaaa gcggtcccac ttcaggagcc cgagggtcag gatcacgacc
     1081 gtaagcgagc cgcccagcag cgccaccacg gcgagcgcca ccaggatgac cggcatggcg
     1141 agccgcgtcg tgaccaggaa cgtcaccgcg aggtcgacct tgccgccgaa gtagccggcg
     1201 agcagtccca tggtcgtccc gatgacgccc gagatgagca tgacggagac gccgatcagc
     1261 agggaaatcc gtgccccgta gagcgtgcga gaaaaatagt cgcggccgag gttatcggtg
     1321 ccgaagacgt gctcccagct tcccttggcg taccacacgg gcgggatggt tcgccgcgcg
     1381 aggtcctggg catagggatc gtgcggggcg atgagcggtg cgcacagggc taggagggca
     1441 accagcccca cgatgccgag gccgaacacc aggctcgtgt gcttgaacag gcggccgcgc
     1501 aggcgcgcgc ccgcggtggg ctcgaggacg tcgagcggct cggggagggt caggcggtcg
     1561 atggccatca cgccacccgc atgcgcgggt cgagccaggc gttcgcgatg tcggccgcga
     1621 gcgtcagcag gacgtagaac acggacagga gcatcacgac ggcctgggtc accgggaaat
     1681 cgcggtggct gatgctctcg taggccagga acccgaggcc atcgagggcg aagatggtct
     1741 cgatcaccac ggagccgccc aaaaggaacc cgagctgcac ggcggcgagc gccacgaccg
     1801 gcaccacggc attgcgcagg gcgtgcttga agatgacggt gcgcgccggc aggcccttgg
     1861 cgcgcgccgt gcggatgtag tcggccgaga gcacctcgac catgccggcg cgcgtcaagc
     1921 gcatgaaggc cggcgccacg tagtagccga gcgcgatggt cggcatgacg aaatgcgccc
     1981 aggtgccgct ccccgacacc ggcagccagc gcagctggat cgagaacagc atgatgagga
     2041 tgagggcgaa gaagaagttg ggcagcgcct gcccgaacac cgcaatgccg agcgcgagcc
     2101 ggtcgatcca gctgttggcg aacacggccg cgagaactcc gagcgggatc gagaccgcga
     2161 gggcgaacag gatcgagaac agcccgagcc acagggtcgt cggcagcttc tcgatgacca
     2221 ggccgatgac gtcggtcttg aaatagagcg actgcccgaa gtcgccccgc accgtgcgcc
     2281 agagccagtc gaggtactgc acgacgagag gccgatcgag gccgtaggtc ttgcggacga
     2341 gttcgatgtc ctcggcgcgc gcgccctctc cggcgatcgc cgaggcgacg tcgccggaga
     2401 ggcgcaggag cgtgaagctg atgagcgaca cggtgagcgc cacgaggagc gcgaggccga
     2461 gccgcttcag gacaaaggca agcatggggt cttgtactct gcggtcactg ccggggccaa
     2521 gcggcgcacc gccgcgcgct ccggatgccc gcgaaacggc gacgatgccg gaaaaacccc
     2581 gagggggccg ccgacgatgc cgggaagatg ccgacaaaaa ccgacgatga cgacaagcct
     2641 cgccagg
//
LOCUS       DASQWN010000034         3434 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1395352, whole genome shotgun sequence.
ACCESSION   DASQWN010000034 DASQWN010000000
VERSION     DASQWN010000034.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 3434)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3434)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3434
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1395352"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..209)
                     /locus_tag="VE686_00650"
     CDS             complement(<1..209)
                     /locus_tag="VE686_00650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016847076.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HYY82989.1"
                     /translation="MLRRLPPLNAVKSFEAAARSESFARAAEELRVTPAAVSHQVKAL
                     EATLGLKLFTRERQRLAITEAGREYL"
     gene            385..834
                     /locus_tag="VE686_00655"
     CDS             385..834
                     /locus_tag="VE686_00655"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY82990.1"
                     /translation="MANRHIVHQTAQMRCPNGEKRVASGPLLGRAASLLLGVAITLAA
                     TATAGHAACSATLAVTATRMADLQAPASGRLWFATISVDAAGCAADATGNFDMVVSRA
                     KENAPEVVFRERFVWQAPSVTIGVDFAADEAVEDYRIERVTPCACSG"
     gene            complement(836..1546)
                     /locus_tag="VE686_00660"
     CDS             complement(836..1546)
                     /locus_tag="VE686_00660"
                     /EC_number="4.2.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018271394.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016829 - lyase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DJ-1/PfpI family protein"
                     /protein_id="HYY82991.1"
                     /translation="MSEPASPAALDIGFPLFPALTQLDLTGPWEVLTRLPGARCHLLA
                     HDLAPVRSASGLTIVPTLTYAECPQLAMVCVPGGPGHLTAMEDQALLAFLRRQAPGCR
                     YVTAVCTGALVLGAAGLLRGYRATTHWMSRERLATFGAIPVAERVVVDRNRITGGGVT
                     AGIDFALTVAADLAGPETARQIQLGVEYAPAPPFSDGTPETADPALVAAVREKAKAYQ
                     ARMAEIDARAAARLESSA"
     gene            1654..2415
                     /locus_tag="VE686_00665"
     CDS             1654..2415
                     /locus_tag="VE686_00665"
                     /EC_number="2.6.99.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012336247.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0033856 - pyridoxine 5'-phosphate synthase
                     activity [Evidence IEA];
                     GO_process: GO:0008615 - pyridoxine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxine 5'-phosphate synthase"
                     /protein_id="HYY82992.1"
                     /translation="MKPLRLGVNIDHVATIRNARNGHHPDPVRAAHLAILAGADGITA
                     HLREDRRHIRDDDMERLKRQLFSPLNFEMAATEEMIAIARRIRPHAACLVPEKRTEQT
                     TEGGLDVVGGHNHLVPAVRALAEEGMRVSLFVEPEIEAMEAARALGAPVVELHTGAYA
                     DAVIADETDRVGEELERLRRAAAHGAAIGLEIHAGHGLTIDNVGPVAAIAELAELNIG
                     HALVGDAIFMGLDEAVRQMRAAMDAGREGAAARRG"
     gene            2450..2851
                     /gene="acpS"
                     /locus_tag="VE686_00670"
     CDS             2450..2851
                     /gene="acpS"
                     /locus_tag="VE686_00670"
                     /EC_number="2.7.8.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019905369.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008897 - holo-[acyl-carrier-protein]
                     synthase activity [Evidence IEA];
                     GO_process: GO:0008610 - lipid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="holo-ACP synthase"
                     /protein_id="HYY82993.1"
                     /translation="MILGIGSDLCDIRRIERSLDRFGDRFTNRIFTEGERARSDRRAA
                     RAPSYARRFAAKEACSKALGTGMRAGVFWRDMEVVNLPSGRPTMRLTGGALMRLKEMT
                     PAGWEAVVHVSLTDDPPLAQAFVVIEARPRP"
     gene            2931..>3434
                     /gene="lepB"
                     /locus_tag="VE686_00675"
     CDS             2931..>3434
                     /gene="lepB"
                     /locus_tag="VE686_00675"
                     /EC_number="3.4.21.89"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019404170.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004252 - serine-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0006465 - signal peptide processing
                     [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptidase I"
                     /protein_id="HYY82994.1"
                     /translation="MDQARVDQRLKKEEGGLWETIKVVIQALLIAVVVRTVLFQPFNI
                     PSGSLVPTLLVGDYLFTSKYSYGYSRYSIPFGPPLFSGRLWGSEPKRGDIAVFKLPKD
                     NSTDYIKRVIGLPGDKIQVVEGILQINGKAVLRERIADYETSDAFGRTIAVPQYQETL
                     PNGVSHRI"
BASE COUNT          543 a         1188 c         1186 g          517 t
ORIGIN      
        1 agatactcac ggcccgcctc cgtgatggcg agccgctgcc gctcgcgcgt gaagagcttg
       61 agcccgagcg tcgcctccag cgccttcacc tgatggctga cagctgccgg cgtgacgcgc
      121 aactcctcgg cggcccgcgc aaagctctcg ctgcgggccg ccgcctcgaa gcttttgacg
      181 gcgttgagcg gcggcagccg gcgaagcatc tcgtgtccat acaaaaaatt aaggctagtg
      241 tacgagttgc catggccgtc gcaagtcggt tgctcccgct aggatggtta ccttttctaa
      301 ggcggccgtt agaactactg cgttgtgcga ccgtcctgct ttcgcctgaa atgtcctcct
      361 gccccggcac ccggaggagc accgatggcc aaccgacaca tcgtccacca aaccgcgcag
      421 atgcggtgcc ccaatggcga gaagcgcgtc gcgagcggcc ccctgctcgg ccgagcggcc
      481 tcccttcttc tcggcgtcgc gatcacgctc gccgcgacgg cgacggccgg gcacgcggcc
      541 tgcagcgcga ccctggcggt gaccgcgacc cgcatggccg atctccaggc gccggcgtcc
      601 ggacggctct ggtttgccac catctcggtc gatgccgcgg gctgcgcggc ggatgcgacg
      661 gggaacttcg acatggtcgt gtcccgcgcc aaggaaaacg cgcccgaggt cgtgttccgc
      721 gagcgcttcg tctggcaagc cccctccgtg accatcggcg tcgacttcgc cgccgacgag
      781 gcggtggagg actaccgaat cgagcgagtc acgccctgcg cgtgttcggg ctagatcacg
      841 ccgaggactc gaggcgcgcc gccgccctcg catcgatctc cgccatgcgg gcctgataag
      901 ccttggcctt ctcgcgaacg gccgcgacga gcgccgggtc ggcggtctcc ggcgtcccgt
      961 ccgagaaggg tggggcaggg gcgtattcca ccccaagctg gatctggcgc gcggtctctg
     1021 ggccggcgag atcggccgcg accgtcagag cgaagtcgat gccggccgtc accccgccgc
     1081 cggtgatgcg gttgcggtcg acgacgactc tctcggccac cgggatcgcg ccgaacgtcg
     1141 cgaggcgctc gcgagacatc cagtgcgtcg tggcacgata gccgcgcagg agccccgcgg
     1201 ccccaagcac gagcgcgcct gtgcacacgg ccgtcacata gcggcagccg ggcgcctgcc
     1261 ggcgcagaaa cgcgagcagc gcctgatcct ccatggccgt gagatgcccg ggcccgccgg
     1321 gcacgcacac catggcgagc tgtgggcact cggcataggt gagcgtcggg acgatggtga
     1381 gaccgctcgc gctgcgcacc ggagcaagat cgtgggcgag gaggtggcag cgcgcgccgg
     1441 gcagccgcgt cagcacctcc caagggccgg tcaggtcgag ctgcgtcagc gcggggaaga
     1501 gcggaaagcc gatatcgagg gcagcggggg aggcaggctc ggacattgca tcgctccaca
     1561 agggccgcgg gtgcgccggg gcgcggcgcc gccctgcacc atagtgtagc tctcgcgcat
     1621 cggctaaaca ggtcgcatgc gaggacgagc cgaatgaagc ccctgcgtct cggcgtgaac
     1681 atcgatcacg tggcgaccat ccggaacgcc cggaacggcc atcatcccga cccggtgcgc
     1741 gccgcgcatc ttgctattct agccggtgcc gacggcatca ccgcgcacct gcgcgaggac
     1801 cgccggcaca tccgcgacga cgacatggag cgcctgaagc ggcagctgtt ctcgccgctg
     1861 aacttcgaaa tggccgcgac cgaggagatg atcgccatcg cgcggcggat ccggccgcac
     1921 gccgcctgcc tcgtgccgga gaagcgtacc gagcagacga cggagggcgg gctcgacgtc
     1981 gttggcgggc acaatcacct tgtcccggcc gtccgggcgc tcgcggagga ggggatgcgg
     2041 gtgtcgctct tcgtcgagcc cgagatcgag gccatggagg cggcgcgcgc gctcggcgcg
     2101 cccgtcgtcg aactgcatac gggggcgtac gccgacgcgg ttattgccga tgagactgat
     2161 cgggtcgggg aggagctcga gcgccttcgc cgggccgccg cgcatggcgc cgcgatcggc
     2221 ctcgagatcc acgccgggca cggcctgacc atcgacaacg tcggccctgt ggcggccatt
     2281 gcggagctcg ccgagctcaa catcgggcat gccctcgtcg gggacgccat cttcatgggc
     2341 ctcgacgaag ccgtgcggca gatgcgggcc gccatggatg cgggccggga gggtgcggcg
     2401 gcgcggcgcg ggtgacaagc gcgccagttc tgcccacttg taacgtccca tgatcctcgg
     2461 catcggctcg gacctctgcg acatccggcg catcgaacgg tcgctcgacc gtttcggcga
     2521 ccggttcacc aatcgcatct tcaccgaggg cgaacgggcg cgcagcgacc ggcgcgctgc
     2581 gcgtgcgccg tcgtatgctc ggcgattcgc cgccaaggag gcctgctcga aggcgctcgg
     2641 caccggcatg cgcgcgggcg tgttctggcg cgacatggag gtcgtcaacc tgccgagcgg
     2701 ccgcccgacc atgcggctca ccggcggcgc gctgatgcgg ctgaaggaga tgacgcctgc
     2761 cggctgggaa gccgtggtgc acgtctcgct gaccgacgat ccgccgctcg cgcaggcttt
     2821 cgtcgtcatc gaggcgcgac cgcgaccgtg agacggctcg cgttgcggca cgaggcccat
     2881 tgagctagac cgcccgcggt cgggcggcgc ccgcttcagg atcgcatgag atggaccagg
     2941 cccgcgtgga ccagaggctc aagaaggaag aaggcggcct ctgggagacc atcaaggtcg
     3001 tcatccaggc gctcctcatc gccgtcgtcg tccgcacggt gctgttccag cccttcaaca
     3061 ttccctcggg ctcgctcgtc ccgaccctgc tcgtcggcga ctacctgttc acgtcgaagt
     3121 actcctacgg ctattcacgc tattcgattc cgttcggccc gccgctgttc tccggccgtc
     3181 tctgggggtc ggagccgaag cgcggcgaca ttgcagtgtt caagctgccg aaggacaact
     3241 cgacggacta catcaagcgg gtcattggcc ttccgggcga caagatccag gtggtcgagg
     3301 gtatcctgca gatcaacggc aaggccgttt tgcgcgagcg catcgccgac tacgagacaa
     3361 gcgacgcctt cggccgcacc atcgcagtcc cgcagtatca ggagaccctg ccgaacgggg
     3421 tgtcccaccg catc
//
LOCUS       DASQWN010000035         3726 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1197353, whole genome shotgun sequence.
ACCESSION   DASQWN010000035 DASQWN010000000
VERSION     DASQWN010000035.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 3726)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3726)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3726
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1197353"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(290..484)
                     /locus_tag="VE686_00680"
     CDS             complement(290..484)
                     /locus_tag="VE686_00680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008973981.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY82995.1"
                     /translation="MSGNGKPDRSSDTSTVNPGDAAPAGTPGTGENVCQDCKGSGRLG
                     NAPCKTCGGTGKVIEGISGA"
     gene            646..1662
                     /gene="dgcN"
                     /locus_tag="VE686_00685"
     CDS             646..1662
                     /gene="dgcN"
                     /locus_tag="VE686_00685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019964522.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyltransferase DgcN"
                     /protein_id="HYY82996.1"
                     /translation="MQISPPYLMFLGDVPDQLAAKTAHGIVDWRREWCLGQLRLPGCG
                     ADLGLPEIGIDEAGRQGAKTLIVGVANAGGFLPDHWTAVIVQAIEAGLDVASGLHVRL
                     GSKPEIAQAAARHGRKLFDVRHSDQSFATGKGRKRTGLRLLTVGTDCSVGKKYTVLAL
                     EREMRASGFDAEFRATGQTGVFISGRGVAIDAVVADFISGAVEWLSPDAAADHWDLVE
                     GQGSLFHPSFAGVSLGLLHGAQPDAFVVCHEPTRTTMRGVQQPLPSIGEVIDLTIRCG
                     RLTNPAIRPVGIAVNTQALGEDEAKAYLDGLAREHELPATDPVRFGVASIVELLGKAF
                     PRAR"
     gene            1726..2352
                     /locus_tag="VE686_00690"
     CDS             1726..2352
                     /locus_tag="VE686_00690"
                     /inference="COORDINATES: protein motif:HMM:NF022607.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2939 domain-containing protein"
                     /protein_id="HYY82997.1"
                     /translation="MRWFIRFFVVLTLAWLVFAASPYYALYDFARAVEAGDLATIRSR
                     VNFSAVRISLSKQLVTAYLVATGRESELKASNKGLVAAAGGTLVDPLLAQYVTPEALA
                     GFLADGRGAAGAAGSGAGITLPGAASADGGLAPKSLRAAWSLFLGSESRGFRVIVFPV
                     PPEKSPEEQFRLQFRLSGLTWRLVGVEMPQAVQQRLIQEMLRREGKGA"
     gene            complement(2374..2511)
                     /locus_tag="VE686_00695"
     CDS             complement(2374..2511)
                     /locus_tag="VE686_00695"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY82998.1"
                     /translation="MAGQGNTASVAAPLAPVPHLSLGAACLGFFASTLGLTAVMVFLG
                     A"
     gene            complement(2592..3392)
                     /locus_tag="VE686_00700"
     CDS             complement(2592..3392)
                     /locus_tag="VE686_00700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012112525.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HYY82999.1"
                     /translation="MRLARRAARWGFAAAAIVAPALVQAAEPEPCPGLVASREALFQR
                     AALGEREVGLTFVGHATFVIESAGGIRAATDYNDHVRPPVPPDIATMNKAHTTHFTMR
                     PDPRIKHVLRGWDMSGAAAHHDVTVGDMHVRNVATNLRDWGGGTENNANSIFVFETAQ
                     LCIAHLGHLHHTLTPEHLTKLGRIDVLLVPVDGGYTLDTAGMMEVLAAINAPLMIPMH
                     YFNSATLERFLTAARARYAVEFSNTPSIVVSRETLPRAAKVLVLPGLH"
     gene            3528..3605
                     /locus_tag="VE686_00705"
     tRNA            3528..3605
                     /locus_tag="VE686_00705"
                     /product="tRNA-Pro"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:3563..3565,aa:Pro,seq:ggg)
BASE COUNT          544 a         1289 c         1295 g          598 t
ORIGIN      
        1 atggcttgca ccaacaggag gagcaccagc gagatggcaa cccgcgcctt cgcggccgtc
       61 atttcggcct caagctccgc gctcgccagg agccgcggcg ccgcgtccgc ggccgggtcg
      121 tccatgatac gccccccgca gacgcgtccg gcgcgccaga tccggttacc cggaacacgc
      181 gtattgtact gcgcgcgcgg ctccctgtcc cagcgatagc tcccgccgct gcggcgagtg
      241 cgtctcccgg cgagacagcc cttcgcggcg acctcttcgc ttgcgggctc tacgcccccg
      301 agatgccctc gatcaccttg ccggttccgc cgcaggtctt gcagggagcg ttcccgagcc
      361 ggcccgaacc cttgcagtcc tggcagacgt tctcaccggt gccgggcgtc ccggccgggg
      421 ccgcgtcgcc ggggttgacg gtggacgtgt ccgacgaccg atccggtttt ccgttgccgc
      481 tcatccgggg ttcctcctca tcgggttggc ttggctgacc aacgccgcgc gatggagcag
      541 ggttgcgtcc cgagcggcgg agatcgcttg cgcgcggagg cttgtgaaac gacattgcgg
      601 gccagccgcc gcggttacag ccgcggccgc tcccaggaga gttccgtgca gatttcccca
      661 ccctacctga tgttcctcgg cgacgtgccg gaccagctcg ccgccaagac cgcgcacggc
      721 atcgtcgatt ggcgccgcga atggtgcctc gggcagttgc ggctgccggg gtgcggtgcc
      781 gatctcggct tgcccgagat cggcatcgac gaggccggcc gtcagggcgc caagaccttg
      841 atcgtcggcg tcgcgaacgc gggcgggttc ctgccggacc actggaccgc ggtcatcgtc
      901 caggcgatcg aggccgggct cgacgtggcg agcgggttac acgtgcgcct cggctccaag
      961 cccgaaatcg cgcaagccgc ggcgcgacac ggccgcaagc tcttcgacgt tcgccactcc
     1021 gaccagagct tcgcgaccgg gaagggccgc aagcgcaccg gcctgcgcct gctcacggtg
     1081 ggcaccgatt gctcagtggg caagaagtac acggtcctgg cgctcgagcg cgagatgcgc
     1141 gccagcggct tcgacgccga gttccgggcg accgggcaga cgggcgtgtt catctcggga
     1201 cgcggcgtcg ccatcgacgc cgtcgtagcg gatttcattt ccggagccgt cgagtggctg
     1261 tcgccggacg ccgccgcgga ccactgggac cttgtggagg gccagggctc gctctttcat
     1321 ccctccttcg cgggcgtatc gctcgggctc ctccacggcg cgcaacccga tgccttcgtg
     1381 gtctgtcacg agccgacgcg aacgaccatg cgcggcgtcc agcagccgtt gccgtccatc
     1441 ggcgaggtca tcgacctcac gatccggtgc ggccggctga ccaaccccgc catccggccg
     1501 gtcggcatcg ccgtcaacac ccaggccctc ggagaggacg aggcaaaggc ctatctcgac
     1561 ggcttagcgc gggagcacga gctgccggcg accgatcccg tccgcttcgg cgtcgcgtcc
     1621 atcgtcgagc tactcggcaa ggcgttcccc cgcgcccgct gagactgccg ccgcttttcc
     1681 gtattgtcgc cgccggcagg cctcaaacga cggcgaggag ctgccatgcg ctggttcatc
     1741 cgtttcttcg tcgtccttac gctcgcctgg ctcgtctttg cggcgtcgcc ctactacgcc
     1801 ctgtacgact ttgctcgggc cgtcgaggcc ggcgacctcg cgaccatcag gtcccgggtc
     1861 aacttctcgg ccgtgcggat ctcgctgtcg aagcaactcg tcaccgccta cctcgttgcg
     1921 acgggccgcg agagcgagct caaggcgtcg aacaagggcc ttgtggcagc ggcgggcggc
     1981 acgctcgtcg atccgcttct cgcccagtac gtaacgcctg aagccctagc gggcttcctc
     2041 gccgacgggc gtggagcggc gggagcggcc gggtccggag ccggcatcac gttgccggga
     2101 gcagcatccg ccgacggagg cctggcgccg aagagcctga gggccgcctg gagcttgttc
     2161 ctcggatccg aaagccgcgg tttccgcgtc atcgtgttcc cggtgccgcc ggagaagagc
     2221 cctgaagagc aattccggct gcagttccgg ctgagcggcc tcacctggcg gctagtcggg
     2281 gtggagatgc cgcaggcagt ccagcagcgg ctgatccagg agatgctgcg ccgggaaggc
     2341 aagggcgcct gagccccagc ctccgcgaag gtctcaggcg cccaggaaca ccatgaccgc
     2401 ggttaggccg agggtcgagg cgaagaagcc gaggcacgca gccccgagcg aaagatgcgg
     2461 caccggcgcg agcggcgcgg caacgcttgc agtgtttccc tggcccgcca tggcggcctc
     2521 ctccttcgat gggaggacct tcagccaagc cgtgcccgag cggtgtgcgg cagcgcacgc
     2581 gacggggcgg ctcagtggag ccccggcagg accagcacct tcgcggcccg cggcagcgtc
     2641 tcgcgcgaaa ccacgatgga cggcgtgttg gagaactcga ccgcgtagcg cgcccgcgcc
     2701 gcggtaagga agcgctcgag agtcgcgctg ttgaagtagt gcatggggat catgagcggc
     2761 gcgttgatcg ccgcgagcac ctccatcatg ccggcggtgt cgagggtgta gccgccgtcg
     2821 acgggcacga gcaggacatc gatgcgaccg agcttcgtca ggtgctccgg cgtgagcgta
     2881 tggtgcaggt ggccgagatg agcgatgcag agttgggccg tctcgaacac gaagatcgag
     2941 ttcgcgttgt tctccgtccc gccgccccaa tcgcgcaggt tggtcgcgac gttgcgtacg
     3001 tgcatgtcgc cgaccgtcac gtcgtgatgc gcggcggcgc cgctcatgtc ccagcccctc
     3061 aggacgtgct tgatgcgtgg gtccggccgc atcgtgaagt gcgtcgtgtg cgccttgttc
     3121 atggtggcga tgtcgggcgg cacgggaggg cggacgtggt cgttgtagtc ggtcgctgcc
     3181 cggatcccgc ccgcgctctc gatgacgaac gtcgcatgcc cgacgaaggt caggccgacc
     3241 tcgcgctcgc cgagcgccgc gcgctggaag agcgcctcgc gcgatgcgac gaggccaggg
     3301 cacggctccg gctcggcggc ctggacgagg gccggcgcga ctatggctgc agcggcaaaa
     3361 ccccatcgtg cggcgcggcg ggcaaggcgc atgggacacc ttcgaggcga ggaccggcca
     3421 gtgtacccgg gtcaccggcg aacgctacag gtcccggcgg ccgtcgagcc gcaccgatcc
     3481 ggagcgcatt gcacaacccc cctcgagccc ctataagccg cccacgtcgg agcgtagcgc
     3541 agcccggtta gcgcactagt ctgggggact aggggtcccg agttcaaatc tcggcgctcc
     3601 gaccactcaa acccttgacc ggtttgggtt ttcaggaggc tcggccgggg cgcctttggt
     3661 ctggttgcgc tcgtgtcgcc accatgtcgc cacgtcgacg aaggtcgggg cgctgaagtg
     3721 catttc
//
LOCUS       DASQWN010000036         2556 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1098162, whole genome shotgun sequence.
ACCESSION   DASQWN010000036 DASQWN010000000
VERSION     DASQWN010000036.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2556)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2556)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2556
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1098162"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1390)
                     /locus_tag="VE686_00710"
     CDS             complement(<1..1390)
                     /locus_tag="VE686_00710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009492302.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transglycosylase domain-containing protein"
                     /protein_id="HYY83000.1"
                     /translation="MNVVLVKLFATALTLSQVTTRPDAIRTDFDPVRDRPAVAQLLRD
                     GCAHMKKAFDIEDINLDDLITTAMDDPQALTSNAKVLQGIEFKDLHAAYREFCKNEKV
                     EGSPVDLGEVITYYVKAVADLPDHARLKGMKLPGATLVLDGKGERFAEIHEPDHRRVW
                     VPISEIPQAVQQAFVAAEDKRFFEHRGIDERSVIRAFMSSFAKTGRPQGGSTITQQVA
                     KNLLVGDDVTYERKMREMIVAARVERTLSKPEILELYLNSIYLGRRSWGIEMAAQSYF
                     GKRARDLTLEEGALLAGLTKGPSFYNPDRHPARVQQRLAYVLGRLAENGAISAEAAQQ
                     AAANPPRLVAHDRVRREVGFHYVDYVAREAKKVAKLSSLTADSYVVRSTIHPELQRAT
                     EVALQDGLARYERAHGRARFAGSEMNLADAIRRVEAKGLADPSVPAWRQVFGAARMPL
                     YDVHWPAAIVLDK"
     gene            complement(1633..>2556)
                     /locus_tag="VE686_00715"
     CDS             complement(1633..>2556)
                     /locus_tag="VE686_00715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011090157.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldo/keto reductase"
                     /protein_id="HYY83001.1"
                     /translation="LGKSGLRVSVVGLGCNNFGGRIDLEATRKVVHKAIDLGITLFDT
                     ADVYGERGGSETLLGQVLGNRRKDIVLASKFGMVMDDAEKLKGGSRRYIMRAVEDSLR
                     RLKTDWIDLYQLHRNDPLTPLEETLRALDDLIRQGKVRYIGCSNLPAWRVVEAQWTAR
                     TKGLNAFTSCQDEYSLLVRDIERDIVPVAQEYGLGILPYFPLASGLLTGKYRRNATLP
                     EGARLTTTQRLADRYMTEANWERVERLDDFAKARGRTLLELAFSWLAAKPVVSSVIAG
                     ATKPEQLEANVRATEWTLTPEDLAEIDAITA"
BASE COUNT          394 a          854 c          862 g          446 t
ORIGIN      
        1 ccttgtcgag cacgatcgcg gccggccagt gcacgtcgta gagcggcatg cgggcggcgc
       61 caaaaacctg ccgccaagcc ggcaccgacg ggtccgccag acctttcgcc tccacccgcc
      121 ggatggcgtc ggcgaggttc atctcggaac cggcaaaacg cgcccggcca tgcgcgcgct
      181 catagcgggc gagcccgtcc tgcagcgcca cttcggtggc gcgctgcagt tccggatgga
      241 tggtggagcg caccacatag gagtccgccg tcaggctcga cagcttggcg accttcttgg
      301 cctcgcgcgc gacataatcc acatagtgaa agccgacctc gcgccgcacc cggtcatggg
      361 ccacgagccg cggcggattg gcggccgcct gctgcgccgc ctcggcgctg atcgccccgt
      421 tttcggccag ccgccccagc acataggcga gccgctgctg cacccgcgcc ggatggcggt
      481 cgggattgta gaaactcggc cccttggtga gaccggcgag cagcgcgccc tcttccagcg
      541 tgaggtcgcg cgcgcgcttg ccaaaatagc tctgcgccgc catctcgatg ccccaggagc
      601 ggcggccgag atagatcgag ttgagataga gctccagaat ctccggcttc gacagcgtgc
      661 gctccacccg cgccgccacg atcatctcgc gcatcttgcg ctcataggtg acgtcgtcgc
      721 ccaccagcag gttcttggcc acctgctggg tgatggtgga gccgccctgc ggccgcccgg
      781 tcttggcaaa cgaactcatg aaggcgcgga tcaccgatcg ctcgtcgatg ccgcggtgct
      841 cgaaaaagcg cttgtcctcc gccgccacaa aggcctgctg cacggcttgc ggaatctcgg
      901 aaatcggcac ccacacccgg cgatggtcgg gctcgtggat ctcggcgaag cgctcgcctt
      961 tgccgtccag cacgagggtg gccccgggca gcttcatgcc cttgagcctg gcgtggtcgg
     1021 gcaggtcggc gaccgccttt acgtagtatg tgatcacctc gccgagatcg acgggggagc
     1081 cctcgacctt ctcgttcttg cagaactcgc gataagcggc gtgcagatcc ttgaactcga
     1141 ttccctgcag caccttggcg ttggacgtca gcgcctgcgg gtcgtccatg gccgtggtga
     1201 tgaggtcgtc gaggttgatg tcctcgatat cgaaggcctt cttcatgtga gcgcagccgt
     1261 cgcgtaggag ctgcgccacg gcgggcctgt cccgcacggg atcgaagtcc gtcctgatgg
     1321 catcggggcg ggtggtgacc tggctcaacg tcagggcggt cgcaaaaagc ttgacgagga
     1381 ccacgttcat aggcgggctg aagcctcggg gcgcaggctc actgagcgcc cgttcagatg
     1441 aatcaaagct gtacaaagcg gctttttgcg gatggctcgg tcgtggtccg gactggctca
     1501 gcagacgctc ggcggcagcc ggaggcgccg tcgcctacgg ggttcgcgtg ctggcccatc
     1561 gaaaggctgc ccgggtaccc gccctcgccg tagccacggg cagcgcacgg gcttgaagct
     1621 gcgggtggct tcttacgccg tgatcgcgtc gatctcggcg aggtcctcgg gcgtgagcgt
     1681 ccactcggtc gcgcggacgt tcgcctcgag ctgctcgggc tttgtcgcgc cggcgatgac
     1741 gctcgacacg accggcttcg cagcgagcca gctgaaggcg agttcgagga gcgtgcggcc
     1801 gcgcgccttg gcgaagtcgt cgaggcgctc gacccgctcc cagttcgcct ccgtcatgta
     1861 gcggtcggcg agccgctgtg tggtcgtgag ccgcgcacct tcgggcaggg tggcgttgcg
     1921 ccggtacttg ccggtgagca acccgctcgc gagagggaaa tacggcagga tgccgaggcc
     1981 gtattcctgc gccaccggca cgatgtcccg ctcgatgtca cgcaccagca ggctgtactc
     2041 gtcctggcac gaggtgaatg cgttgaggcc cttcgtgcgc gccgtccact gcgcttcgac
     2101 cacgcgccag gcggggaggt tcgagcagcc gatgtagcgc accttcccct ggcggatgag
     2161 gtcgtcgagc gcccgcagcg tctcctcgag cggcgtcagc gggtcgttgc ggtgcagctg
     2221 gtagaggtcg atccagtcgg tcttcaggcg cctgagagag tcctcgacgg cccgcatgat
     2281 gtagcgccgc gagccgcctt tcagcttctc ggcatcatcc atgaccatgc cgaacttcga
     2341 ggcgagcacg atgtccttgc ggcggttgcc tagcacctgc ccgagcaggg tctccgagcc
     2401 gccgcgctcg ccatagacgt cggccgtgtc gaacaacgtg atgccgaggt cgatcgcctt
     2461 gtgcaccact ttgcgggtcg cctcgaggtc gatgcgaccg ccgaagttgt tgcagccgag
     2521 gccgacaacg gacacccgaa ggcccgactt gccgag
//
LOCUS       DASQWN010000037         5415 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1396231, whole genome shotgun sequence.
ACCESSION   DASQWN010000037 DASQWN010000000
VERSION     DASQWN010000037.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 5415)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5415)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5415
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1396231"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..178)
                     /locus_tag="VE686_00720"
     CDS             complement(<1..178)
                     /locus_tag="VE686_00720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011423854.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trehalose-6-phosphate synthase"
                     /protein_id="HYY83002.1"
                     /translation="MRSGRLVVVSNRVPVPGDGARSSAGGLAVALEAALKARGGLWFG
                     WSGKTGESDPEALDV"
     gene            complement(435..1184)
                     /gene="otsB"
                     /locus_tag="VE686_00725"
     CDS             complement(435..1184)
                     /gene="otsB"
                     /locus_tag="VE686_00725"
                     /EC_number="3.1.3.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020090562.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004805 - trehalose-phosphatase activity
                     [Evidence IEA];
                     GO_process: GO:0005992 - trehalose biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="trehalose-phosphatase"
                     /protein_id="HYY83003.1"
                     /translation="MTVAARRLALFLDFDGTLVDIAPLPDAVVVEPDLPATLERLRAS
                     MGGALALVSGRPIATLDAFLGTAFDAAGLHGLEARLGGTLHPCNIEDHPHLRRGIAWL
                     RETLDVPGIVIEDKGCSVGVHWRLAPDHAEPAREAAEELAAGLGPEYRIQHGKMVAEV
                     LPVQAGKGGAIARFLEHAPYAGRVPLFVGDDLTDEDGFSVVNRLGGTSVRVGAGPTQA
                     THRVASAAAFRILLRQWAEAGTVDLAALART"
     gene            complement(1189..1854)
                     /locus_tag="VE686_00730"
     CDS             complement(1189..1854)
                     /locus_tag="VE686_00730"
                     /EC_number="3.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014492142.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HYY83004.1"
                     /translation="MIKAVLFDVDGTLIDSVDLHARAWQEALAHCGYDVAFEAVRSQI
                     GKGGDQLMPVFVPKDDLKRRGEELETYRGDLFKRKYLPHVRPFPKVRDLFERLRADRK
                     TIVLASSGKAEEVRRYMDIARIADLIDASTSSDEVERSKPYGDIFAAALGKAAPARAE
                     EAIVIGDTPYDAQAAGKVGLRTIGVLCGGFPEADLRAAGCSAIFRDPADLLARYEHSP
                     LAE"
     gene            1975..3327
                     /locus_tag="VE686_00735"
     CDS             1975..3327
                     /locus_tag="VE686_00735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018043668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="solute carrier family 23 protein"
                     /protein_id="HYY83005.1"
                     /translation="MAGEGYFPGWRLKTQGAVMPDERLPAGQTVVLGLQHVVAMFGAT
                     VLAPILMGFDPNVAILFSGIATLIFFVAVGGRVPSYLGSSFAFIGPVLAATGATVGQA
                     NPNIAVALGGIIAAGALYFLIGLIVQLAGHRWIERLMPPVVTGAIVAAIGLVLAPIAI
                     ASASGTSATDPAGAAFPRWIALITVVAVGLVAVYAPGFWRRLPILIGAALGYFAYLVL
                     ANGFGIGAPIDFSKVGAAQWLGLPQFASPVFNGAAISLIAPVAIILVAENLGHIKAIG
                     AMTGRNLDPYLGRAFMGDGVATMLSGFFGGTGVTTYAENMGVMAVTRIYSTLLFVAAA
                     CIAILLGFSPKFGALIQTIPVPVLGGLSIVVFGLIAAAAGRIWVENRVDFSQPRNLVP
                     VAVALVLGAGNFKLNVAGFTLDGIGTATFGAIILYHLLNRAGATDERDAKAPSGTADA
                     "
     gene            3412..5124
                     /locus_tag="VE686_00740"
     CDS             3412..5124
                     /locus_tag="VE686_00740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003615702.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AMP-binding protein"
                     /protein_id="HYY83006.1"
                     /translation="MTNTAVPAAAPADAKPWLKAYPPGVQASIDESKIGTVTDIFLES
                     VRRYGDRDALESFGHRMTYAAVHKAAQAIGSWLQGQGLKKGDRVALMMPNVLAYPAST
                     FGALMGGFAVVNVNPLYTPRELVHQLNDSGARAIIVLENFAHTVEAALPQTKIEKVVI
                     ARPGDLMGLKGVLVNVVSRYVKKAVAPYKLPDAVPFSRVLAEGGKRPLDRVAVSPDDV
                     AFLQYTGGTTGVAKGATLLHRNVSANLLQIEAIIHPFLDDREGRLMITALPLYHILAL
                     TGCGLFMCRLGACQLLIANPRDIDGFVKILQTRPFTSLVLVNTLYNALGNHPDIGKAD
                     FSKLEFCTAGGMATQAAVAKRWKAISGKPIVEGYGLSETSPVVSSNFLNLEEFSGTIG
                     YPVPSTDVSIRSDDGKPLPIGEAGEICIKGPQVMAGYWNRPDETAKVMTADGYFRSGD
                     VGVMLPDGALKIVDRLKDMVLVSGFNVYPNEIEDVLASHPGVLEAAVIGVPDEHSGEA
                     VAAYVVRKDPALTEDALRAYCRENLTGYKVPRTISFREALPKTNVGKVLRRALRDEVL
                     APPA"
     gene            5235..>5415
                     /locus_tag="VE686_00745"
     CDS             5235..>5415
                     /locus_tag="VE686_00745"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-methionine-sulfoxide reductase catalytic
                     subunit MsrP"
                     /protein_id="HYY83007.1"
                     /translation="MLIKHVRSSDVRASDVTPEAAFLNRRAFIAASAGAIAGSSIAPP
                     ALAQLADPTLDLYPAK"
BASE COUNT          825 a         1891 c         1829 g          870 t
ORIGIN      
        1 tcacgtcgag cgcctcggga tcagattcgc cggtcttacc cgaccagccg aaccatagcc
       61 caccccgcgc cttgagcgcg gcttcgagcg cgaccgcgag cccacctgcg ctcgacctcg
      121 ccccgtcgcc tggcaccggc acccggttcg acacgacgac gagccgaccg ctgcgcatcg
      181 caccgttcgg tccggcgcca tcggccgggg aaggaccgtt gcctggccgc ccgttcgtgg
      241 gcgtgctccg ccgcgggcgc gcgcccgaca ggggcacgcc cgtgccgtgc gcctcgacgg
      301 caacggctgg agggctcccg aagagtgagg gaagtgcgtc ggacgggccc ggaaccggac
      361 ggctcgtcat cgtgcgcctg aatggacgtt catctacatg ggcaacccgt accggccgcc
      421 aaatgttccg catgtcaggt ccgcgcgagg gcggcgaggt cgacggtgcc ggcctccgcc
      481 cattgcctca ggaggatgcg gaacgcggca gcggaagcga cgcgatgtgt cgcttgcgtc
      541 gggcccgcgc cgaccctgac cgaagtgccg ccgaggcggt tcaccaccga aaatccatcc
      601 tcgtctgtga gatcgtcccc gacgaagagc ggcacccggc cggcataggg tgcgtgctcg
      661 aggaaacgtg cgatcgctcc gcccttgccg gcctgcacgg ggagcacctc ggcgaccatc
      721 ttgccgtgct ggatgcggta ttccggcccg agccccgccg cgagctcctc ggcggcctcc
      781 ctcgcgggtt ctgcgtgatc gggcgcgagg cgccagtgca ccccgaccga gcagcccttg
      841 tcctcgatga cgatgcccgg gacatcgagg gtctcgcgca gccaggcgat gccgcggcga
      901 agatgcgggt ggtcttcgat attgcacggg tgcagcgtcc ccccgaggcg ggcttccagc
      961 ccgtgcagcc cggccgcgtc gaaggcggtg cccaggaagg catcaagggt cgcgataggg
     1021 cggccgctga cgagggcgag ggccccgccc atagacgcgc gcaaccgctc gagggtggcg
     1081 ggcaggtccg gctccacgac cacggcgtcc ggcagcggcg cgatgtcgac cagggtgccg
     1141 tcgaagtcga ggaagagcgc aaggcgccgc gccgccacag tcatcgcttc actccgcgag
     1201 cggagagtgc tcgtagcggg cgagaagatc cgccgggtcc cgaaagatgg cactgcagcc
     1261 agccgccctc aagtcggctt ccgggaagcc tccgcagagg acgccgatcg ttcgcaagcc
     1321 caccttgccg gcggcttgcg cgtcgtacgg cgtgtcgccg atcacgatcg cctcctcggc
     1381 gcgggccggc gcggccttcc cgagcgcagc cgcgaagatg tcgccgtacg gcttcgagcg
     1441 ctcgacctcg tccgatgacg tcgaggcgtc gatgaggtcg gcgatcctgg cgatgtccat
     1501 gtagcgcctg acctcttccg ccttgccgga cgaggcgagc acgatcgtct tgcggtcggc
     1561 ccgtagacgc tcaaagaggt cgcggacctt cgggaaaggc cgcacgtgcg gcaggtactt
     1621 ccgcttgaac aggtcgccgc ggtaggtttc gagctcctcg ccgcgccgct tcaggtcgtc
     1681 cttgggcacg aacaccggca tgagctggtc gccgcccttg ccgatctgcg aacgtacggc
     1741 ctcgaaggcg acgtcgtagc cgcaatgggc aagcgcctcc tgccaagcgc gggcgtggag
     1801 atcgacgctg tcgatgaggg ttccgtcgac gtcgaagagc actgctttga tcatgggccg
     1861 gcaacggtcc agcgcttgct tttgatccct ccgggctcct cgcggcgaac ggcaaccctg
     1921 gaccggcgcg gagcgggcgc tacggtgatg ctgggcaggc gaggggaggc ggcgatggca
     1981 ggcgagggct atttcccagg gtggcggctc aagacccaag gggccgtcat gcccgacgag
     2041 cgcctcccgg cagggcagac ggtggtgctc gggctgcagc acgtggtcgc gatgttcggc
     2101 gcgaccgtgc tggcgcctat cctgatgggc ttcgacccaa acgtcgcaat cctcttctcg
     2161 ggcatcgcga cattgatctt cttcgtcgcg gtgggaggcc gggtcccgag ctacctcggc
     2221 tcgagcttcg ccttcatcgg acccgtgctc gccgcgaccg gcgcgacggt cggccaagcc
     2281 aatccgaata ttgccgtcgc gctcggcggc atcatcgcgg ccggcgcgct ctatttcctc
     2341 atcgggctga tcgtccagct ggcaggccat cgctggatcg aacgcctcat gccgccggtg
     2401 gtcacgggcg ccatcgtcgc ggctatcggc ctcgtgctcg cgccgattgc gatcgcaagc
     2461 gcatctggca cctcggcgac cgatccggcg ggcgccgcgt tcccgcgatg gatcgcgctg
     2521 atcacggtcg tcgccgtcgg cctcgtcgcg gtgtacgcgc cgggcttctg gcgccggctt
     2581 ccgatcctga tcggcgccgc cctcggctac ttcgcctatc ttgtgctcgc caacggcttc
     2641 ggcatagggg cgccaatcga cttctccaag gtcggcgcgg cgcagtggct cggcctaccc
     2701 cagttcgcaa gtccggtctt caacggtgcc gcgatcagcc tcatcgcgcc ggtcgcgatc
     2761 atcctcgttg cggagaacct cgggcacatc aaggcgatcg gcgccatgac ggggcgcaac
     2821 ctcgacccgt atctcggccg cgcgttcatg ggcgatggtg tcgcgaccat gctctcgggc
     2881 ttcttcgggg gcactggggt cacgacgtat gccgagaaca tgggcgtcat ggctgtcacg
     2941 cgcatctact cgactctgct cttcgtggcg gccgcgtgca tcgcgatcct gctcgggttc
     3001 tcgccgaagt tcggggcgct gatccagacc atcccggttc cggtgctcgg gggcctgtca
     3061 atcgtggtct tcgggctcat cgccgctgcg gcgggccgga tctgggtcga gaaccgggtc
     3121 gacttctcgc agccgcgcaa cctcgtcccg gtcgccgtcg cgctcgtcct cggagccggc
     3181 aacttcaagc tcaacgtcgc cggcttcacc ctcgacggga tcgggacggc gaccttcggg
     3241 gcgatcatcc tctaccacct cctgaaccga gcgggagcaa cagacgagcg ggacgcgaag
     3301 gcgccgtccg ggacggcaga cgcgtaactc ggctgccaac atcccaggcg cccttgccgc
     3361 accggcgcgg gtgtggtgcg ctaggcgcga acgagaacat ggggggagac catgaccaac
     3421 acagcagttc ccgcggcggc gcccgccgat gcgaagccgt ggctcaaggc gtatccgccg
     3481 ggcgtccagg cgagcatcga cgagtccaag atcggcaccg tcacggacat cttcctcgag
     3541 agcgttcgcc gctacggcga ccgcgacgcg ctcgagagct tcgggcaccg catgacctac
     3601 gcggccgttc acaaggccgc ccaggcgatc gggtcatggc tgcaggggca aggtctcaag
     3661 aagggcgacc gtgtcgccct gatgatgccg aatgtgctcg cctatccggc ctcgaccttc
     3721 ggcgcgctca tgggcggctt cgcggtcgtg aacgtgaatc cgctgtacac gccgcgtgag
     3781 cttgtccacc agctcaacga ctccggcgcc cgggcgatca tcgttctcga gaacttcgcc
     3841 catacggtcg aagcggcgct gccgcagacc aagatcgaga aggtcgtgat cgcacggccc
     3901 ggggacctca tgggcctcaa gggcgtgctc gtgaacgtcg tttcgcgcta cgtgaagaag
     3961 gcggtcgcgc cctacaagct gccggacgcg gtgccgttca gccgggtcct cgccgagggc
     4021 ggcaagcggc cgctcgaccg cgtggcggtc tcgcccgacg atgtcgcgtt cctgcagtac
     4081 acgggcggga cgacgggggt cgccaagggc gcgacgctcc tgcatcgcaa cgtctcggcg
     4141 aacctcctcc agatcgaggc catcatccat ccgttcctcg acgaccgcga gggccggctg
     4201 atgatcacgg ccctgccgct ctaccacatc ctcgccctca cgggttgcgg gttgttcatg
     4261 tgccggctcg gcgcgtgcca gctcctcatc gccaacccgc gcgacatcga cgggttcgtg
     4321 aagatcctgc agaccaggcc gttcacgtcg ctggtgctcg tcaacaccct ctacaacgcc
     4381 ctcggcaacc accccgacat cgggaaggcg gacttttcga agctcgagtt ctgcacggcc
     4441 ggcggcatgg cgacccaggc cgccgttgcc aagcgctgga aggcgatcag cggcaagccg
     4501 atcgtcgagg gctacggcct ctcggaaacg tcgcccgtcg tctcgtcgaa cttcctcaac
     4561 ctcgaggagt tctcaggcac tatcggctac ccggtcccgt cgaccgacgt gtcgatccga
     4621 tccgatgacg gcaagccgct gccgatcggg gaggcgggcg aaatctgcat caagggcccg
     4681 caggtcatgg ccggatattg gaaccgcccg gacgagaccg ccaaggtcat gacggcggac
     4741 ggctacttcc gttccggcga cgtcggcgtg atgctccccg acggcgcgct caagatcgtc
     4801 gaccggctca aggacatggt cctggtgtcg ggtttcaacg tctatccgaa tgagatcgag
     4861 gacgtgctcg caagccaccc gggcgtgctc gaggcggcgg tgatcggggt gccggacgaa
     4921 cactcgggag aggcggtcgc cgcctacgtg gtccgcaagg atccggctct cacagaggac
     4981 gccctgcgtg cctactgccg cgagaacctc accggctaca aggtgccgcg caccatctcc
     5041 ttccgcgagg ccctgccgaa gacgaacgtc ggcaaggtgc tgcggcgcgc cctgcgcgac
     5101 gaggtcctcg cgccgccggc ctgaggtggc acccgagcgg ggtcgcggcg ccttgatcgc
     5161 gggccctcgc cgttctgtga cttgagttcg cgtgcccgtg cggcgagggt gccggcctcg
     5221 gaaggagatc tccgatgctg atcaagcatg tacgctcgtc ggacgtccgc gcctctgacg
     5281 tcacgcccga agccgcgttc ctcaaccggc gcgcgttcat cgccgcgagc gcgggagcaa
     5341 tcgcaggcag cagcatcgcc ccgcccgccc ttgcgcaact cgccgacccg acgctggatc
     5401 tttatccggc caagc
//
LOCUS       DASQWN010000038         3227 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1198129, whole genome shotgun sequence.
ACCESSION   DASQWN010000038 DASQWN010000000
VERSION     DASQWN010000038.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 3227)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3227)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3227
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1198129"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..80
                     /locus_tag="VE686_00750"
     CDS             <1..80
                     /locus_tag="VE686_00750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013166245.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="transcription termination/antitermination
                     protein NusG"
                     /protein_id="HYY83008.1"
                     /translation="RVKVAVSIFGRATPVELEYTQVEKT"
     gene            257..706
                     /gene="rplK"
                     /locus_tag="VE686_00755"
     CDS             257..706
                     /gene="rplK"
                     /locus_tag="VE686_00755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010686899.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L11"
                     /protein_id="HYY83009.1"
                     /translation="MAKKITGYVKLQVPAGAANPSPPIGPALGQRGLNIMEFCKAFNA
                     KTAQMEKGTPIPVIITAYQDRSFTFEMKQPPVTYFLKRAAGLKLGKKPASGSKTPGKG
                     GAVGRVTEAQLREIAAVKMPDLNCESVDAAVAMIRGSARAMGLEVVA"
     gene            719..1420
                     /gene="rplA"
                     /locus_tag="VE686_00760"
     CDS             719..1420
                     /gene="rplA"
                     /locus_tag="VE686_00760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007566052.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000311 - plastid large ribosomal subunit
                     [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L1"
                     /protein_id="HYY83010.1"
                     /translation="MAHQGKRIRAAREGIDATKLYGIQDAVKLIKERAKAKFDETVEV
                     AMNLGVDPRHADQMVRGVCNLPNGSGRDVRVAVFARGAKADEAKAAGADVVGAEDLVE
                     IVQGGTIDFDRCIATPDMMPLVGRLGKVLGPRGLMPNPKVGTVSMDVAGAVRAAKGGA
                     VEFRVEKAGIVHAGIGKASFEDGKLVENIRAFADAVAKAKPAGAKGTYIQRIAVTSTM
                     GPGVKVDPASVLGTA"
     gene            1915..2433
                     /gene="rplJ"
                     /locus_tag="VE686_00765"
     CDS             1915..2433
                     /gene="rplJ"
                     /locus_tag="VE686_00765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015928578.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0015934 - large ribosomal subunit
                     [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L10"
                     /protein_id="HYY83011.1"
                     /translation="MDRAAKRELVSTLNDVFSNTSVVVVAHYKGLTVADMQKLRTQMK
                     QAGATVKVAKNRLAKIALEGTDVASIQTLMKGPTLIAYSSDPVAAPKVAVDFAKGNDK
                     LVILGGAMGTTALNPDSVKALATMPSLDELRAKLVGLIQAPATKIAQVVNAPAAKLAR
                     VFGAYAKTGEAA"
     gene            2490..2867
                     /gene="rplL"
                     /locus_tag="VE686_00770"
     CDS             2490..2867
                     /gene="rplL"
                     /locus_tag="VE686_00770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003597539.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L7/L12"
                     /protein_id="HYY83012.1"
                     /translation="MADLAKIVDDLSSLTVLAAAELAKLLEEKWGVSAAAAVAVSAGP
                     AAGAAAPAAEEQTEFTVVLAGVGDKKIEVIKEVRAITGLGLKEAKDLVEGAPKPVKES
                     VGKDEAEKIKATLEKVGAKVELK"
BASE COUNT          581 a         1076 c         1082 g          488 t
ORIGIN      
        1 cccgcgtgaa ggtggcggtc tcgatctttg gccgcgcgac gccggtcgag ttggaataca
       61 cccaggtcga gaagacctga cggatgaatt ctcggccgga gccctgcttc ggccctgatc
      121 gcctctacgg aggctcactt cgcgggaggc ttgtccggtc gccagccggg cctttgaaga
      181 agccgtaccg cgacctgcaa ccgcctgaca gcccggccgg cagccgggcc cgatggcatt
      241 tctagggagc agtcccatgg caaagaagat cacgggctac gtgaagcttc aggttccggc
      301 cggcgccgcc aacccgtcgc cgccgatcgg tcccgcgctc ggtcagcgcg gcctcaacat
      361 catggaattc tgcaaggcct tcaacgcgaa gaccgcgcag atggagaagg gcaccccgat
      421 cccggtgatc atcaccgcgt atcaggaccg ctccttcacc ttcgagatga agcagccgcc
      481 cgtcacgtac ttcctcaagc gcgcggcagg gctgaagctc ggcaagaagc cggcctcggg
      541 ctcgaagacc cctggcaagg gcggggccgt cggccgcgtg acggaagcgc agctgcgcga
      601 gatcgccgcc gttaagatgc ccgacctcaa ctgcgagtcg gtcgatgccg ccgtggccat
      661 gatccggggt tcagcccggg ccatgggcct cgaagtcgtc gcttaagggg aggggaccat
      721 ggcacatcaa ggcaagcgta tccgcgccgc ccgcgagggc atcgacgcca ccaagctcta
      781 cggcatccag gatgccgtga agctcatcaa ggagcgcgcc aaggcgaagt tcgacgagac
      841 cgtcgaggtc gccatgaacc tcggcgtcga cccgcgccac gccgaccaga tggtccgcgg
      901 cgtctgcaac ctgccgaacg gctccggccg tgacgtgcgg gtggcggtct tcgctcgcgg
      961 cgccaaggcg gacgaggcca aggcggcagg cgccgacgtc gtcggggccg aggacctcgt
     1021 cgagatcgtc cagggcggca cgatcgactt cgaccgctgc atcgcgacgc ccgacatgat
     1081 gccgctggtc ggccgcctcg gtaaggtgct gggcccgcgc ggcctgatgc cgaacccgaa
     1141 ggtcggcacg gtgtcgatgg acgtcgccgg cgcggtccgg gccgccaagg gcggcgcggt
     1201 cgagttccgg gtcgagaagg cgggcatcgt gcacgccggc atcggcaagg cgtcgttcga
     1261 agacggcaag ctcgtcgaga acatccgcgc cttcgcggac gccgtcgcca aggccaagcc
     1321 cgcgggcgcc aagggcacct acatccagcg catcgccgtc acctcgacga tgggccccgg
     1381 cgtgaaggtc gacccggcga gcgtgctcgg caccgcgtaa cagcgggccg gaaagcctcg
     1441 ccaatcccct tgactctttg tcgcaagggg attggcaggc ctgcttcgac catgtaagag
     1501 acagcccatg tctccatata tccgtacggg cgggcggagt tttccgcgcg cctaaacgag
     1561 tttccgtccg ggcgaccggg cggaggacgg ccggcgagcc gaagggtttc cctttggctc
     1621 gatccggcca tgtcctgtcc gagactgcag gtgccggccg ggctcgcccg tccggcttaa
     1681 gccatccggg cctgcataga cggggaaggc cgtaattccc gttcgcctct gtccgaggcg
     1741 gacgtgttcg gttcgaacca tctcgcccgc ctcgcggctc gccgcgattc gggggacagg
     1801 gcttgcgaga gcgtcgctca aagccgctcg gaggtgcaag ccttcgggtc gcgtgtttga
     1861 gcggcagatg caaccggcgg ggcagcgttt gtcccgccta tcggagagag cccagtggac
     1921 agagcagcaa agcgcgagct cgtctcgacg ctcaacgacg tgttttcgaa cacgagcgtg
     1981 gtcgtcgtgg cccactacaa aggcctcacg gtcgccgaca tgcagaagct gcgtacgcag
     2041 atgaagcagg ccggcgccac cgtgaaggtc gccaagaacc ggctcgccaa gatcgctctc
     2101 gaaggcacgg acgtcgcgtc catccagacc ctgatgaagg gtccgaccct gatcgcttac
     2161 tcgagcgatc cggtcgcggc gcccaaggtc gccgtcgact tcgccaaagg aaacgacaag
     2221 ctcgtgatcc tcggcggggc gatgggaacg accgccctga atccggacag cgtgaaggca
     2281 ctcgccacca tgccgtccct cgacgaactg cgtgccaagc tcgtggggct catccaggct
     2341 cccgcgacga agatcgcgca ggtcgtcaac gcgccggcag cgaagctcgc ccgcgtgttc
     2401 ggggcctatg ccaagacagg cgaagcggcg taacgccgat ccacctcaaa ccctgatcat
     2461 cgaaccgaac acactgaagg atcaaaacca tggctgatct tgccaagatc gtcgacgacc
     2521 tgtcgtcgct gaccgttctc gcggccgccg agctcgcgaa gctcctcgag gagaagtggg
     2581 gcgtctccgc cgccgccgcc gtcgcggttt cggccggccc ggctgccggc gccgccgctc
     2641 cggccgccga ggagcagacc gagttcacgg tcgtcctcgc cggcgtcggc gacaagaaga
     2701 tcgaggtcat caaggaagtc cgcgccatca cgggcctcgg cctcaaagag gccaaggacc
     2761 tcgtcgaggg tgcgccgaag cccgtcaagg agagcgtcgg caaggacgag gccgagaaga
     2821 tcaaggccac cctcgagaag gtcggcgcca aggtcgagct gaagtaactg cgttacgtca
     2881 gcttcatccc cgggacgcgc agcgaaaccc gggggtcccg ctccgagggc gtgccttccg
     2941 gaacgggatg gccgggtcag ccccggccat gacgagaaca tgatgcgacg gtctcgggct
     3001 tcttgcccgg ggccgtcgta tccgtccggg gcccctggtc tccgggcgtt gcagtcggga
     3061 tcgcgtgaag atcccatttt tcaatgcgtt gctgccattc gttgcagtaa cgcgtcatgc
     3121 ggttgacccg gcgccccaag gcaaggcgcc cggtcagccg tgatgaggag cgaggtcgaa
     3181 acaatggccc agacgctgat tggtcgtaag cgcatccgca ggttctt
//
LOCUS       DASQWN010000039         3008 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_896814, whole genome shotgun sequence.
ACCESSION   DASQWN010000039 DASQWN010000000
VERSION     DASQWN010000039.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 3008)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3008)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3008
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_896814"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            189..356
                     /gene="rpmG"
                     /locus_tag="VE686_00775"
     CDS             189..356
                     /gene="rpmG"
                     /locus_tag="VE686_00775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006611239.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L33"
                     /protein_id="HYY83013.1"
                     /translation="MAKAVTIKVKLVSSADTGFYYVTKKNSRTKTDKLVMKKYDPVAK
                     KHVEFREAKIK"
     gene            complement(422..649)
                     /locus_tag="VE686_00780"
     CDS             complement(422..649)
                     /locus_tag="VE686_00780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009764345.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dodecin"
                     /protein_id="HYY83014.1"
                     /translation="MPEEHVYKVIELVGSSEKSIEDAIQTAVSRAGRNLRNLRWFEVM
                     QTRGHVEGGQVRHYQVTLKVGFTLDDEGAGD"
     gene            complement(1016..2389)
                     /locus_tag="VE686_00785"
     CDS             complement(1016..2389)
                     /locus_tag="VE686_00785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017487119.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PleD family two-component system response
                     regulator"
                     /protein_id="HYY83015.1"
                     /translation="MSARVLVVDDIFPNLKLLETKLTAEYFDVVGAMNGPDALAICEQ
                     GLCDIVLLDVMMPGMDGFEVCRRIKGSPATAHLPVIMVTALDQPGDRLRGLDAGADDF
                     LTKPVDDIALVARVRNLVRLKSMMDELRTRAMASRDFGFTDPLVAAAAETGLNASVLL
                     VDERPSSHERLSATLRHSHLVEVEQDPHNALVRAAEGNFDVVIVSLDLQDFDGLRLCS
                     QLRSLDRTRKASVLMIADPDDKARILRGLDIGVHDYVLRPVDRNELVARVRTLVRRKR
                     FADRLRESVQTSMELAVTDALTGLHNRRYLDSHLGGLFDEAALRGRPMSILVMDIDRF
                     KTINDTFGHDAGDEVLREFSMRVRAHTRGIDVVARFGGEEIVVVVPDTPLDGAEAVAE
                     RIRERVEATPFAVHRATRQVSVTVSIGVAAREDGDTSSAEVLKRADQALYLAKQRGRN
                     RVVATAA"
     gene            complement(2405..2773)
                     /locus_tag="VE686_00790"
     CDS             complement(2405..2773)
                     /locus_tag="VE686_00790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003599942.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HYY83016.1"
                     /translation="MKKTVLIVEDNELNMKLFNDLLEAHGYATLKTGNGIDAIELARA
                     HRPDLILMDIQLPEVSGLEVTKWLKEDDELKAIPVIAVTAFAMKGDEERIREGGCEAY
                     LSKPISVGKFLATVRTYLGD"
BASE COUNT          475 a          995 c         1055 g          483 t
ORIGIN      
        1 catggctgtc ttcttacgcg ctccgcgccc gcctgtgcag ccggcccgcg cggtgcgccg
       61 gcgcgcccgc cgatcttgac gcacgcggct cgatgcggca tggagccggc acgatttcgg
      121 ccgggttcgc ccggcccttt gcgtttggcc tcgtgagcgc cggcgcgagc accccgaaag
      181 gttcgaccat ggccaaggcc gtcaccatca aagtcaagct cgtctcgtca gccgacaccg
      241 gcttctacta cgtgacgaag aagaactcgc gcaccaagac cgacaagctc gtcatgaaga
      301 agtacgaccc ggtcgccaag aagcacgtcg agttccgcga agccaagatc aagtaaggct
      361 cgccctcgcg cgaggctgtt cgagccgccc ctcgccgggg cggctttttg ctgcctgccg
      421 ctcagtcgcc ggcgccctcg tcgtcgaggg tgaaaccgac cttcagggtg acctggtagt
      481 ggcggacctg gccgccctcg acgtggccgc gggtctgcat cacctcgaac cagcgcaggt
      541 tcctgagatt ccggccggcg cgcgacaccg ccgtctggat ggcatcctcg atgctcttct
      601 ccgaggaccc gacgagctcg atgaccttgt agacgtgctc ctccggcatg gccgctctcc
      661 cgctcatgcc gcccgcggcg gccgagccgc gatggtacgt ctgccaaggg gtcgaggcca
      721 ggggccgcga ggcgcgggtt gcggaaggaa aaaggcggcc ggccaggagc ggcgatgagg
      781 aggccatgaa ccgccccttg gccggcctag acccgcggag cgccaggaga tgcggcggac
      841 ctgacgctcc agggtcgttc gagggcgctc gaggcaggca gtgcatgcgg tcgagcgccg
      901 ttgaaccgac ccttaccgcc cccggtctcc ggggcaaggc gcagagcctc gcttcggcgg
      961 cttaaatcct tgtaaaggtt aagtgttagg cgtggagctt gccggccgcc gagcgtcagg
     1021 cggccgttgc gacgacgcga ttgcggccgc gctgcttcgc cagatacagc gcctgatcgg
     1081 cgcgcttcag cacctcggcc gaggaggtgt cgccatcttc gcgggcggcg acgccgattg
     1141 acacggtgac cgagacttgc cgcgtcgccc ggtggaccgc gaatggggtc gcctccacgc
     1201 gctcgcggat gcgttcggcg acggcctcgg cgccatcgag cggggtgtcc gggacgacga
     1261 cgacgatctc ctcgccgccg aagcgggcga cgacgtcgat gccgcgggtg tgggcccgca
     1321 cgcgcatgga gaattcgcgc agcacctcgt cgccggcgtc gtggccgaag gtgtcgttga
     1381 tggtcttgaa gcggtcgatg tccatgacga ggatcgacat gggccggccg cgcagcgccg
     1441 cctcgtcgaa gagcccgccg aggtggctgt cgaggtagcg tcggttgtgg agccccgtca
     1501 gcgcgtccgt gacggcgagc tccatcgagg tctggacgct ctcccgcagg cggtcggcga
     1561 agcgcttgcg gcgcaccagc gtgcgaaccc gcgccacgag ctcgttgcgg tcgaccgggc
     1621 gcagcacgta gtcgtgcacg ccgatgtcga ggccgcgcag gatgcgcgcc ttgtcgtccg
     1681 gatcggcgat catcagcacg gaggccttgc gcgtccggtc gagggatcgc agctggctgc
     1741 acaggcgcag gccgtcgaaa tcctggagat caaggctcac gatcaccacg tcgaagttgc
     1801 cctcggcggc gcgcaccagg gcgttgtggg ggtcctgctc gacctcgacg aggtgcgaat
     1861 gccgcagcgt ggcggaaagg cgctcgtgcg agctcggccg ctcgtcgacg agcagcaccg
     1921 aggcgttgag gccggtctcg gccgccgcgg ccacgagcgg gtcggtaaaa ccgaagtcgc
     1981 gggacgccat ggcgcgcgtg cgcagctcgt ccatcatcga tttcaggcgg acgaggttgc
     2041 gcacccgcgc gacgagggcg atgtcgtcga cgggtttggt caggaagtcg tcggcgccgg
     2101 cgtcgaggcc gcgcaggcgg tcgccgggct ggtcgagggc cgtcaccatg atgaccggca
     2161 ggtgcgccgt cgccggcgac cccttgatgc gccggcacac ctcgaagccg tccatgcccg
     2221 gcatcatcac gtcgaggagg acgatgtcgc acaggccctg ctcgcagatg gcgagggcgt
     2281 cgggcccgtt catggccccg acgacgtcga aatactcggc cgtgagcttg gtctcgagga
     2341 gcttcaggtt cgggaaaata tcgtcgacga caagaacgcg ggcggacatg gcaatgcttt
     2401 ccggtcaatc accgagatag gtgcgcacgg tcgcgaggaa tttcccgacc gagatgggct
     2461 tcgacagata ggcctcgcag ccgccctcgc ggatgcgctc ctcgtctccc ttcatggcga
     2521 aggccgtcac ggcgatcacc gggatggctt tcagctcgtc gtcctccttc agccacttgg
     2581 tgacctcgag cccggacacc tcgggcagct ggatgtccat gaggatgaga tcgggcctgt
     2641 gggcccgggc gagctcgatg gcgtcgatgc cgtttccggt cttcagggtg gcgtagccgt
     2701 gcgcctcgag gaggtcgttg aagagcttca tgttgagctc gttgtcctcg acgatgagca
     2761 cggtcttttt cattggctca tcccctgtgg cgatggacag ggcgcagcgc gccttcgtcc
     2821 ttgcccctcg tgtcggatgc tagtgttaga ggagacatct tgacgaaagg caaaccagac
     2881 ccgcgaagcg ggcgaaagcc gccggaacgg cggtcggccc ggagcgctcc gccccgcacc
     2941 ccgcgacacc ggcatcttcc aaacgccccg ccggaccgac gatgccgggc aaaacgcgga
     3001 cgatgccg
//
LOCUS       DASQWN010000040         2075 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_7666, whole genome shotgun sequence.
ACCESSION   DASQWN010000040 DASQWN010000000
VERSION     DASQWN010000040.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2075)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2075)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2075
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_7666"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..630
                     /locus_tag="VE686_00795"
     CDS             <1..630
                     /locus_tag="VE686_00795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009489454.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YfhO family protein"
                     /protein_id="HYY83017.1"
                     /translation="GYKCRLAGLLGLEYLVLDRPAERLPRHFPRVNDAKLLYGSGQMW
                     IYRLAPAMPRAYVASRLVPVDSEAVLSQDELPEFERTTEALVDDAAVQEIKGDFGQHG
                     GAEAGTLEPMRSSARVTRYERNAVALDVETDHAGLLVLHDIYYPGWEATVDGEPRPIL
                     RANLLFRGVEVGPGRHRVEFRFRPLSMENLVAAATELVEKDDGTERVVQ"
     gene            658..1587
                     /locus_tag="VE686_00800"
     CDS             658..1587
                     /locus_tag="VE686_00800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012454168.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY83018.1"
                     /translation="MKRHILIALALTAQQISAQAQTPTLPSAGSESQPPVGTPTLPPA
                     ASAGAVAPGASAQPAEPTVLSLSAFFSGDPKPIRSGLTWRVYEDRGDQPALLAKSDDP
                     APSFNLPPGAYIVHAAYGFAGATKRVTVAPSGGAAERLAISAGALQLGGVIGDNPIPP
                     AKLSFAIFVPVGNNSEGRLVRANVKGGDIVRLPEGVYHVVSTYGDSNAIMRADLRVEA
                     GRVTAATLNHRAATVTLKLVATAGGEAFAGTAFSVLTPGGDVIREAIGAFPSLTLADG
                     DYVVIARHEGQVYTREFKVESGLDRDIEVTAAR"
     gene            complement(1611..1925)
                     /gene="sugE"
                     /locus_tag="VE686_00805"
     CDS             complement(1611..1925)
                     /gene="sugE"
                     /locus_tag="VE686_00805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013891841.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="quaternary ammonium compound efflux SMR
                     transporter SugE"
                     /protein_id="HYY83019.1"
                     /translation="MAWVLLSVAGLFEVGWAIGLKYTEGFTRLVPSVLTIASMAVSML
                     LLGLALRTLPVGTSYAVWTGIGTVGTALFGIYLFGEPATALRLACIGLIVAGILGLKL
                     VA"
BASE COUNT          329 a          739 c          705 g          302 t
ORIGIN      
        1 ggatacaagt gccggctcgc cggcctcttg ggcctcgagt acctcgtcct cgaccgtccc
       61 gcggagcgcc tgccgcggca cttcccgcgg gtgaacgacg ccaagctcct ctacggctcg
      121 ggccagatgt ggatctatcg cctcgccccc gccatgccgc gcgcgtacgt cgccagccgc
      181 ctggtgcccg tcgactcgga ggccgtgctg tcccaggacg agctgccgga gttcgagcgc
      241 acgacggagg cgctcgtcga cgacgccgcg gtgcaggaga tcaagggcga cttcggccag
      301 catggcggtg ccgaggccgg gactctggag cccatgcgca gctcggcgcg ggtgacgcgt
      361 tacgagcgca acgccgtcgc gctcgacgtc gagaccgacc acgccggcct cctcgtcctg
      421 cacgacatct actacccggg ttgggaggcg acggtcgacg gcgagcctcg ccccattttg
      481 cgcgcaaacc tgctgttcag aggcgtcgag gtcggacccg gccggcaccg ggtcgaattc
      541 cggttccgtc cgctctcgat ggagaacctg gtcgccgctg cgaccgagct cgtggaaaag
      601 gacgacggga ccgagcgggt cgtgcagtga tccgggcggg cgtcgtgcgg ggctagcttg
      661 aaacgacata tcttgattgc ccttgcgctc acggcgcagc agatctcggc ccaggcgcag
      721 acccccaccc tgccctcagc gggcagcgag tcgcagccgc cggtcgggac gccgacgctg
      781 ccgccggccg caagcgcagg agccgtcgca ccgggcgctt cagcacaacc ggcggagccc
      841 accgtgctgt ccctcagcgc gttcttcagc ggcgatccga agccgatccg ctcagggctg
      901 acctggcgcg tctacgagga ccgcggtgac cagccggcgc tgctcgccaa gtccgatgac
      961 cccgcgccga gcttcaacct gccccccggg gcctacatcg tgcacgctgc ctacgggttt
     1021 gccggagcga cgaagcgcgt caccgtggcg ccttcggggg gcgccgccga gcggctcgcg
     1081 atcagcgcgg gagcgctgca gctcgggggc gtcatcggcg acaacccgat cccgcccgcg
     1141 aagctctcct tcgcgatttt cgtgccggtc ggaaacaact ccgaagggcg gctggtgcgg
     1201 gcgaacgtga agggcggcga catcgtccgg ctgcccgagg gcgtctatca cgtggtctcg
     1261 acctacgggg actcgaacgc catcatgcgc gccgaccttc gggttgaggc tggccgggtg
     1321 accgcggcaa ccctcaacca tcgcgccgcg accgtcaccc tgaagctcgt ggccacggcc
     1381 ggcggcgagg ctttcgccgg aacggccttc agcgttctca cccccggggg cgacgtcatc
     1441 cgcgaggcca tcggcgcttt cccgtccctc acccttgccg acggcgacta cgtggtcatc
     1501 gcccgccacg agggccaggt ctatacccgc gaattcaagg tggagagcgg cctcgatcgc
     1561 gatatcgagg tcaccgcggc gcggtaggtc cacctctccg gatgcggccc tcaggcgacg
     1621 agcttgaggc ccaagatgcc ggcgacgatc aggccaatgc aggcgaggcg cagcgccgtc
     1681 gccggttctc cgaagaggta gatcccgaag agcgccgtgc cgaccgtgcc gatccccgtc
     1741 cacaccgcgt acgaggtccc gaccggcagg gttctcagcg caaggccgag gagcagcatg
     1801 ctcactgcca tgctggcgat agtcagcacg gaaggcacaa gccgcgtgaa gccctcggtg
     1861 tacttgagcc cgatcgccca gccgacctcg aacagccccg cgacagagag cagaacccaa
     1921 gccaaggcct agtggatctc cggctcggga atcccctcgg aaccctcgag gaagtcgaag
     1981 tcggcgccct cgtgagcctg gcgcacgtgc tgggcgaaga gcctgttgta gccacgtggg
     2041 tagtcgcggg gcggcggcga ccaggttttc agtcg
//
LOCUS       DASQWN010000041         2066 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1099122, whole genome shotgun sequence.
ACCESSION   DASQWN010000041 DASQWN010000000
VERSION     DASQWN010000041.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2066)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2066)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2066
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1099122"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..738
                     /locus_tag="VE686_00810"
     CDS             <1..738
                     /locus_tag="VE686_00810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009760039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HYY83020.1"
                     /translation="AQRGAGALALLGLLGLWQAASSAGLVSPIFAPSPFDVGRALWAM
                     LQSGELAAHVAASLGRFLSGFAIGGTAGVAFGLAVGLSSVMRAPGATVVAALFPIPKI
                     ALLPLFILWFGIGEASKVATIAFGTFFPTVIATYGAVDNVDRSLVRMGRSFALSPAAI
                     VAKIILPGAVPGILSGLRIAASIGVVLLVAAEMIGAEQGLGALVLAAGNLMQSDRLLA
                     GVVVLSMLGLLIAAFIGAVERHLLRWR"
     gene            802..1821
                     /locus_tag="VE686_00815"
     CDS             802..1821
                     /locus_tag="VE686_00815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012255495.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004340 - glucokinase activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0005536 - glucose binding [Evidence IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA];
                     GO_process: GO:0051156 - glucose 6-phosphate metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glucokinase"
                     /protein_id="HYY83021.1"
                     /translation="MGQRAGEPYTFPVLVGDIGGTNARFAVVVSPEAEPELLPKSRTD
                     ELPGPIEAVAHALAGWSGPRPRSALIGVATQVDGPVAHLTNARWSLDAAALGAAFDLQ
                     RLTLVNDFVPVATALVPLHDRHPEALVRLGPDVPARRGPSVVLGPGTGLGAAALIPVG
                     ECLLVQSTEAGHIDFGPCEVDEPPLFAEVDRVCDRHTAEAVLSGPGLLRLYRAHARHR
                     GVGSACSEPKHVVDAGLAGNEVAGAALMHFARLLGRFAGDLALVFGAVGGVYVAGGIA
                     PRIASVLLASDFRQAFERKAPLDRFVRAVPTWLIAHPDPAIEGLAAIAAAPDRFLFQS
                     YTWKP"
     gene            complement(1824..>2066)
                     /locus_tag="VE686_00820"
     CDS             complement(1824..>2066)
                     /locus_tag="VE686_00820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012040906.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HYY83022.1"
                     /translation="LEIRALAIAMFYAVGTGIGGVLGPLVFGMLVESGSRTAVFMGYL
                     FGSALMIGAALVAARWAVAAERKSLEHVARPLALAE"
BASE COUNT          237 a          774 c          728 g          327 t
ORIGIN      
        1 gcgcagcgcg gggccggcgc cctcgcgctc ctggggctcc tggggctgtg gcaggcggca
       61 tcgagcgccg ggctcgtcag cccgatcttc gcgccgagcc cgttcgacgt cgggcgcgcg
      121 ctctgggcga tgcttcagag cggcgagctt gccgcccatg tcgcggcctc gctcgggcgc
      181 ttcctgtcgg gcttcgccat cggcggcacg gccggggtcg cgttcggcct cgcagtcggg
      241 ttgtcgagcg tcatgcgcgc tccgggcgcc acggtcgtcg cggcgctgtt cccgatcccc
      301 aagatcgcgc tcctgccgct gttcatcctg tggttcggca tcggcgaggc ctcgaaggtg
      361 gcgaccatcg ccttcggcac cttcttcccg accgtgatcg ccacctacgg cgccgtcgac
      421 aacgtcgacc gctcgctggt gcgcatgggc cgcagcttcg cgctgtcgcc ggccgccatc
      481 gtcgccaaga tcatcctgcc cggcgcggtg ccgggcatcc tctcgggcct gcgcattgcc
      541 gcgtccattg gcgtcgtgct cctcgtcgcc gccgagatga tcggtgccga gcagggcctc
      601 ggcgccctgg tgcttgccgc tggcaacctg atgcagtccg accgcctgct cgccggcgtc
      661 gtggtgctgt ccatgctggg cctcttgatt gccgcgttca tcggagccgt ggagcgccac
      721 ctcctgcgct ggcgctgacg cgggagcccg agccgcgggt gcgcgttgac ctccgaccga
      781 ccacgacgga gtcttctcgg aatgggacag cgggcgggcg agccgtacac gttcccggtg
      841 ctcgtcggcg acatcggcgg gacgaacgcg cgctttgcgg tcgtggtctc gccggaggcc
      901 gagccggaac tcctgccgaa gagcaggacg gacgagctgc ccgggccgat cgaggccgtc
      961 gcgcacgcgc tcgcaggctg gagcggcccg cgcccgcgct cggcgctgat cggcgtcgcc
     1021 acgcaggtgg acgggccggt ggcgcacctg accaatgcgc gatggagcct cgatgctgcg
     1081 gctctcggag cggcgttcga cctgcagcgc ctcacgctcg tcaacgattt cgtgccggtc
     1141 gcgaccgcgc tcgtccccct gcacgatcgt catccggaag ccctggtgcg gcttgggccg
     1201 gatgtgccgg cgcggcgcgg cccgagcgtg gtcctcggac cgggaaccgg gctcggcgcg
     1261 gcggccctca ttcccgtggg cgagtgcctg ctcgtgcagt ccacggaagc gggccatatc
     1321 gacttcggtc cgtgcgaggt cgacgagccg ccgctcttcg ccgaggtcga ccgcgtgtgc
     1381 gaccgtcaca ccgccgaagc cgtgctgtcg gggccgggcc tgctgcgcct ctaccgcgcc
     1441 catgcccgcc atcgcggcgt cggctccgca tgcagcgagc cgaagcacgt cgtcgacgcg
     1501 ggcctggccg gcaacgaggt cgcgggcgcc gcgctgatgc acttcgcgcg cctcctcggc
     1561 cggttcgcgg gcgacctggc cctcgtgttc ggcgccgttg gcggcgtcta cgtcgccggc
     1621 ggcatcgcgc ctcgcatcgc ctccgtgctc ctggcgagcg atttccggca ggcgttcgag
     1681 cgcaaggcgc ccctcgaccg gttcgtccgc gcggtcccga cctggctcat cgcccatccc
     1741 gatccggcca tcgagggcct tgcggcgatc gccgccgcgc cggaccgatt cctgttccag
     1801 tcctatacct ggaagccttg aggtcactcc gccaaggcga ggggccgcgc cacgtgctcc
     1861 agcgacttgc gctcagcggc gacggcccag cgcgccgcca cgagcgcggc gccgatcatc
     1921 agggccgagc cgaacaggta gcccatgaac acggccgtcc gcgacccgct ctcgaccagc
     1981 atgccgaaca ccagcggccc cagcacgccg ccaatgccgg tgccgacggc gtagaacatg
     2041 gcgatggcaa gcgcccggat ttcgag
//
LOCUS       DASQWN010000042         2714 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_603248, whole genome shotgun sequence.
ACCESSION   DASQWN010000042 DASQWN010000000
VERSION     DASQWN010000042.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2714)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2714)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2714
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_603248"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            78..740
                     /locus_tag="VE686_00825"
     CDS             78..740
                     /locus_tag="VE686_00825"
                     /EC_number="1.11.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011926194.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008379 - thioredoxin peroxidase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peroxiredoxin"
                     /protein_id="HYY83023.1"
                     /translation="MALQIGDTAPDFEADTTEGRLRFHEWIGDSWCVLFSHPKNFTPV
                     CTTELGYMAKLKPEFDRRGCKIVGLSVDPVEDHAAWSRDIAETTGHAPNYPMIGDADL
                     KVAKLYGMIHPDATGGARERKAADNATVRNVFVIGPDKAIKLIIAYPMSTGRNFDEVL
                     RVLDSLQLTARHKVATPVNWRQGEDVIIVPAVPDEEARQRFPEGWKAPKPYMRIVPQP
                     RT"
     gene            823..1860
                     /locus_tag="VE686_00830"
     CDS             823..1860
                     /locus_tag="VE686_00830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018330152.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HYY83024.1"
                     /translation="MIFRQLFDSASSTYSYLIASRRGGEALIIDPVLEKVDRYLQLVR
                     ELDLRLVKAVDTHLHADHITGLGALRDRTRCITVMGEQSGVDVVSMRVSDGDTLRVEG
                     VGLEAIYTPGHTDDSYSFHMGDRVFTGDTLLIRGTGRTDFQNGDPRAQYEAIFNRLLR
                     LPEETLVFPAHDYKGDTVSTIGEEKAFNPRLQVGSVDEYVALMNGLNLPNPKMMDVAV
                     PANMRQGLHQEEVAKRGWAVTAEAGKALLGRRDVALVDLRERGERQRHGEVPGALHVP
                     YQDLQEGIRPGGVLHELAAATGKRLVFFCAFGERSAMAVQAAQDAGLDSACHIQGGMD
                     AWKKAGGPAVV"
     gene            2100..>2714
                     /locus_tag="VE686_00835"
     CDS             2100..>2714
                     /locus_tag="VE686_00835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011090675.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008430 - selenium binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="selenium-binding protein SBP56-related protein"
                     /protein_id="HYY83025.1"
                     /translation="MNMRPDPTFHASPKLAMDAPAEDFAYTLLLCPDASKPDALAVVD
                     VKPGSPTFSRVVHTVPMPNTGDEFHHFGWNACSSALSPLSGHAFLERRYLVIPGLRSS
                     RLHVVDVKEDPFNPKLVKVIEAEELHRKTGYSRPHTSHCGPEGLYFSALGAPDGGGPG
                     GVFLMDHETFEPKGQWEIDRGPQEFAYDVWWNIGYDTLLTSEWGL"
BASE COUNT          443 a          941 c          974 g          356 t
ORIGIN      
        1 gccggaactc tcggcggccg cgtgccgcgc cgcccgagga gcatcggccg aacaaggtcg
       61 aaccagggag gattacgatg gctctacaga tcggcgacac cgccccggac ttcgaggcgg
      121 acacgacgga ggggcgcctc cggttccacg agtggatcgg cgactcttgg tgcgtgctct
      181 tctcgcaccc caagaacttc acgccggtct gcacgaccga actcggctac atggccaagc
      241 tcaagcccga gttcgaccgg cgcggctgca agatcgtcgg cctcagcgtc gatccggtgg
      301 aggaccacgc ggcgtggtcc agggacatcg cggaaacgac cgggcacgcc ccgaactacc
      361 ccatgatcgg cgacgccgac ctcaaggtgg cgaagctcta cggcatgatc caccccgacg
      421 ccacgggcgg cgcaagggaa cggaaggcgg cggacaacgc gacggtgcgc aacgtcttcg
      481 tcatcgggcc ggacaaggcg atcaagctga tcatcgccta ccccatgagc acgggccgca
      541 acttcgacga ggtgctgcgg gtgctcgact ccctgcagct gacggcgagg cacaaggtcg
      601 ccacgcccgt gaactggcgg cagggggagg acgtgatcat cgtgcccgcc gttcccgacg
      661 aggaggcgcg gcagcggttc cccgagggct ggaaggcgcc gaagccctac atgcgcatcg
      721 tgccgcagcc gaggacctga acgggggccg ggcaccaggc ccggggatcc gcccgcctgg
      781 cgcccgccgg ggcgggcggt cgcctccccg agggagggag ccatgatctt tcgccagctc
      841 ttcgacagcg cctccagcac ctacagctac ctgatcgcca gccgccgcgg cggcgaagcg
      901 ctgatcatcg acccggtgct ggagaaggtg gaccgctacc tccagctggt gcgcgagctg
      961 gacctgcgcc tggtgaaggc ggtggacacg cacctgcacg ccgaccacat caccggcctc
     1021 ggcgcgctgc gcgaccggac gcggtgcatc accgtgatgg gcgagcagag cggcgtggac
     1081 gtggtctcca tgcgcgtgtc cgacggcgac acgctgcggg tcgagggggt gggcctggag
     1141 gcgatctaca cgccgggcca caccgacgac tcctacagct tccacatggg ggaccgcgtc
     1201 ttcaccggcg acacgctgct gatccgcggc accgggcgga ccgacttcca gaacggcgac
     1261 ccgcgcgcgc agtacgaggc catcttcaac cggctgctgc gcctgcccga ggagacgctg
     1321 gtcttcccgg cgcacgacta caagggcgac acggtcagca ccatcggcga ggagaaggcg
     1381 ttcaacccgc gcctgcaggt ggggtcggtg gacgagtacg tggcgctgat gaacgggctg
     1441 aacctgccga acccgaagat gatggacgtg gcggtgccgg ccaacatgcg ccaggggctg
     1501 caccaggagg aggtggcgaa gcggggctgg gcggtcaccg cggaggcggg gaaggcgctg
     1561 ctcggccgcc gcgacgtcgc cctggtcgac ctgcgcgaac gcggcgagcg ccagcggcac
     1621 ggcgaggtcc ccggcgcgct gcacgtgccg taccaggacc tgcaggaggg catccggccc
     1681 ggcggcgtgc tgcacgagct ggccgccgcc accggcaagc gtctggtgtt cttctgcgcc
     1741 ttcggcgagc gctcggcgat ggcggtgcag gcggcgcagg acgcggggct ggactcggcc
     1801 tgccacatcc aaggcgggat ggacgcgtgg aagaaggccg gcgggcccgc cgtagtctga
     1861 gccgcgccgc gcgcgggccc atcgcgcgcc cgcgtccaag ttcgtcgtgc cgcggcgagc
     1921 gccgcgatgt tgcgcttcgc ccgggaccgg cgccgtgtgc cctgccgcct ccaaggtgtc
     1981 cattgcgggc gcagcctgct ggcaagattt caatagtgcc gtacgcggaa caggcacaag
     2041 gtggggcgcg atgggctggc ggcgctgagg gagcgcgaag aaccacagga ggctctgcca
     2101 tgaacatgcg gccggatccc accttccacg cgtcgccgaa gctcgccatg gacgcgccgg
     2161 cggaggactt cgcctacacg ctgctgctct gccccgatgc ctcgaagccc gacgcgctcg
     2221 ccgtcgtcga cgtgaagccc ggctccccga ccttcagccg ggtggtccac acggtgccga
     2281 tgccgaacac gggcgacgag ttccaccact tcggctggaa cgcctgctcg tcggcgctgt
     2341 cgccgctgag cggccacgcc ttcctcgaac gccgctacct ggtcatcccc gggctgcgct
     2401 cctcgcgcct gcacgtggtc gacgtcaagg aggacccctt caaccccaag ctcgtgaagg
     2461 tcatcgaggc cgaggagctg caccgcaaga ccggctactc ccggccgcac acgtcgcatt
     2521 gcgggccgga gggcctgtac ttcagcgcgc tcggcgcgcc cgacggcggc gggccgggcg
     2581 gcgtgttcct catggaccac gagacgttcg agccgaaggg ccagtgggag atcgaccgcg
     2641 ggccgcagga gttcgcgtac gacgtctggt ggaacatcgg ctacgacacg ctgctgacca
     2701 gcgagtgggg cctg
//
LOCUS       DASQWN010000043         3633 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1397470, whole genome shotgun sequence.
ACCESSION   DASQWN010000043 DASQWN010000000
VERSION     DASQWN010000043.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 3633)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3633)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3633
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1397470"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..957
                     /gene="glpD"
                     /locus_tag="VE686_00840"
     CDS             <1..957
                     /gene="glpD"
                     /locus_tag="VE686_00840"
                     /EC_number="1.1.5.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019404854.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009331 - glycerol-3-phosphate
                     dehydrogenase complex [Evidence IEA];
                     GO_function: GO:0004368 - glycerol-3-phosphate
                     dehydrogenase (quinone) activity [Evidence IEA];
                     GO_process: GO:0006072 - glycerol-3-phosphate metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol-3-phosphate dehydrogenase"
                     /protein_id="HYY83026.1"
                     /translation="TVRAKVLVNAAGPWIGSVLTDVVRAEAPARVRLVQGSHIVVPRL
                     YQHERCYIFQNADNRIVFAIPYERDFTLIGTTDRDYKGDPGAVAASEEEIAYLCAAAG
                     EYFRTPVAPADVVWTYSGVRPLYDDGASAAQEATRDYVLHLDAPEGRPALLSIYGGKI
                     TTYRRLAEAALEKLAPHVPAARAPSWTATAPLPGGDFPVDGYDDLVAATVGRHSYLPR
                     SLAARLVRAYGTKVERLLAGAASMADLGQVFGADLTEAEVRYLMAEEWATRADDVVWR
                     RTKLGLRLSGAETAALDTFMQAASARESGPSAAPRSGTSSQS"
     gene            974..2479
                     /gene="glpK"
                     /locus_tag="VE686_00845"
     CDS             974..2479
                     /gene="glpK"
                     /locus_tag="VE686_00845"
                     /EC_number="2.7.1.30"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015927936.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004370 - glycerol kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006071 - glycerol metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol kinase GlpK"
                     /protein_id="HYY83027.1"
                     /translation="MAPYVLAIDQGTTSSRAILFRRDVSIAAVAQQEFPQHFPAPGWV
                     EHDPEDLWTTTVATCRAALEQIGAAARDVAAIGITNQRETTLLWDRRTGAPLHRAIVW
                     QDRRTADLCMRLKADGHELAVTAKTGLILDPYFSGTKLAWLLDNVPGARERAQRGELA
                     FGTVDSYLLWRLTGGAVHATDATNAARTLLFDIHEGAWDDDLLALLDIPRALLPDVRD
                     CAAEFGTTVPELFGGSIAVRGIAGDQQAATIGQACFRPGMLKSTYGTGCFALLNTGDA
                     AVASKAKLLTTIAYQLDGRRTYALEGSIFVAGAAVQWLRDGLGIIQAASQSGALAEAA
                     DPSQEVYLVPAFVGLGAPYWDPDARGAIFGLTRGTGPKELARAALESVCFQTADLVAA
                     MQADWPQAQESATVLRVDGGMVASDWTMQRLADLLGAPVDRPEIKETTALGAAYLAGL
                     SAGLYPDPERFADGWRLERRFVPAMEPATRERKLAGWRDAVGRLLRPRQSA"
     gene            complement(3040..3270)
                     /locus_tag="VE686_00850"
     CDS             complement(3040..3270)
                     /locus_tag="VE686_00850"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY83028.1"
                     /translation="MPRYFFHLADSSERILDPDGLELASDTTAILEATQAVRELLDED
                     QAQATWNGWSLQVVDEGGRVVVSIDLDEVRLH"
BASE COUNT          569 a         1299 c         1205 g          560 t
ORIGIN      
        1 accgtgcgcg ccaaggtgct cgtcaacgcc gccggcccgt ggatcggcag cgtgctgacg
       61 gatgtcgtgc gggcggaagc cccggcgcgc gtgcgcctgg tccagggttc gcacatcgtc
      121 gtgccgcgcc tgtaccagca cgagcgctgc tacatcttcc agaacgccga caaccgcatc
      181 gtcttcgcca tcccttacga gcgcgacttc acgctcatcg gcacgacgga ccgcgactac
      241 aagggcgacc ccggggccgt cgcggcgagc gaggaggaga tcgcctacct ctgtgccgcc
      301 gccggagagt acttccgtac ccccgtcgcg cccgcggatg tcgtgtggac ctattcgggc
      361 gtgaggccgc tctacgacga cggcgcctcg gccgcgcagg aggcgacgcg ggactacgtt
      421 ctccacctcg acgcgccgga gggtcgcccg gcgcttctgt cgatctacgg cggcaagatc
      481 acgacctatc gtcgcctcgc cgaggccgcg ctcgagaagc tggcgcctca cgtgccggcc
      541 gcccgcgcgc catcctggac cgccacggcg ccgctgcctg gaggcgactt cccggtcgac
      601 ggctacgacg acctcgtcgc cgctaccgtc ggccggcata gctacctccc ccggagcctc
      661 gcggcccgcc tggtgcgcgc gtacgggacc aaggtggagc gtcttctcgc aggcgcggcg
      721 tccatggccg atctggggca ggtcttcggc gcggatctca ccgaggcgga ggtccgctac
      781 ctgatggccg aggagtgggc gacccgggcc gacgacgtgg tctggcgccg gacgaagctc
      841 ggcttgcgtc tgtcgggcgc cgagacggcc gcactcgata cgttcatgca ggccgcctcg
      901 gctcgcgaaa gcgggccttc tgctgcgccc cgctcgggga catcatcaca gtcgtagcct
      961 cggaggattg gccatggctc cttacgtcct tgccatcgac cagggcacga cgtcgtcgcg
     1021 cgccatcctg ttccgccgcg acgtctcgat cgcggcggtg gcgcaacagg aattcccgca
     1081 gcatttcccg gcccctggct gggtcgagca cgacccggag gatctgtgga cgacgacggt
     1141 tgcgacctgc cgcgccgcgc tcgagcagat cggcgccgcc gcccgggacg tggcggccat
     1201 cgggatcacc aaccagcgcg agaccacgct gctctgggac aggcgcacgg gggcgccgct
     1261 ccaccgcgcc atcgtatggc aggaccggcg cacggccgac ctttgcatgc gcctgaaggc
     1321 tgacggccat gagcttgccg tcaccgcaaa gacgggcctg atcctcgacc cctacttttc
     1381 cgggaccaag ctcgcctggc ttctcgacaa cgtgcccggc gcacgggagc gcgcgcagcg
     1441 cggcgaactc gccttcggca cggtcgattc gtatctcctg tggcgactga cgggaggcgc
     1501 cgtgcatgcc actgacgcga cgaatgccgc ccgcacgctc ctgttcgaca tccacgaggg
     1561 cgcctgggac gacgacctcc tcgccctcct cgacatcccg cgagcgctct tgccggacgt
     1621 ccgcgactgc gcggccgagt tcgggacgac ggttccggag ctcttcggcg gctcgatcgc
     1681 agttcgcggc atcgccggcg accagcaggc ggcgaccatc ggccaggcct gcttccgccc
     1741 gggcatgctg aagtcgacgt acgggacggg gtgcttcgcc ctcctcaaca cgggcgacgc
     1801 tgcagtcgcg tcgaaggcaa agctcctcac caccatcgcg tatcagctcg acgggcggcg
     1861 cacgtacgcg ctcgagggct cgatcttcgt tgccggcgcg gccgtccagt ggctgcgcga
     1921 cgggctcggg atcatccaag cggcgtccca atccggtgcg ctcgccgagg ccgctgatcc
     1981 gtcgcaggag gtgtatctcg tcccggcttt cgtggggctc ggggcgccgt attgggatcc
     2041 ggatgcgcgc ggcgccatct tcggcctcac ccgcgggacc gggccgaagg agctcgcgcg
     2101 cgccgcgctc gagagcgtgt gcttccagac cgccgacctc gtggcggcca tgcaggccga
     2161 ctggcctcag gctcaggagt ccgcgacggt cctgcgggtc gacggcggca tggtcgcctc
     2221 cgactggacc atgcagcgcc tcgccgacct cctcggcgcg ccggtcgatc ggcccgagat
     2281 caaggagacg accgcgctcg gcgcggcgta tctagccggc ctctcggccg ggctctaccc
     2341 cgaccccgag cgcttcgccg atggctggcg gctcgagcgg cgattcgtgc ccgccatgga
     2401 accggcgacc cgggagcgca agctcgccgg gtggcgcgac gccgtcggcc ggctgctgcg
     2461 gccccgccag tccgcctgaa catccgatca tgtgagcgcg tggcgcaggc cgttgctgtc
     2521 caaagcggaa ccgcacagca gatggcgcga agggctgccg cagatgctcg aggaagcgcg
     2581 tcgcgcaatt cccgagcact tgaagttccg tgccctatgc cgcacagtct tcgatgtcga
     2641 atttagctgg gacacagggc caaactgccg ccggagaccg ggatgacacg cgaaaaggcc
     2701 gcttctactg gacgcgaggt cccgtcgtcc gactccgcga aagtgaaaga gcacattcgg
     2761 aagcttctcg ccaaggcccg agagaagagc tcaaaagcgg ccaggcggtc cgccctttac
     2821 gagcacatcg ccggacaact ggcggactgt gccagggtcg gcctcctcct ggcttccgtt
     2881 gcgtgaagac acgtcgcccc tgatcaccgg gcagagtccg cggagttccg acggagccat
     2941 gcccgatacg gacgccccgc attccgccgt tgacctgacg atgcggcgcc tgcttggaag
     3001 ccggggacct aaaggcccgc gaacatcgaa cgggctaagt caatgcagcc tgacctcgtc
     3061 aaggtcgatg gatacgacaa cgcgaccgcc ctcatccacg acttgaagag accacccgtt
     3121 ccaggtcgct tgcgcttggt cctcgtccag caactccctg accgcctgcg tcgcttccag
     3181 gatagcggtc gtgtcgctcg ccaattccag gccgtctgga tcaaggatgc gctcggagct
     3241 gtccgccagg tggaagaagt agcgcggcat cgtcgtcccc gccgtgaact caagatgcga
     3301 tcgggccata agatcttggt cccgtgaggc gctgcacagc cagcgccttt tgcggcgccc
     3361 tagcactctt tacggggcag gcccacaacc aacggcggaa gcggtctagc ggagcgccaa
     3421 cttcgcttcc tgctgcccgc ctaagcgcgg ttctcgggca aagcaaggcg ccgcccccca
     3481 caaatgcagc tcccaaccca actcatccct aacgatacgg aggcgccgct aaacctgcgc
     3541 tgaatggctc agcaaaaggg tcctcgtggg gagccgcgcc tcgtcggatg ctcaggggcg
     3601 atcctcggca gccagggggc ggcgtgtgga gtc
//
LOCUS       DASQWN010000044         2459 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1099802, whole genome shotgun sequence.
ACCESSION   DASQWN010000044 DASQWN010000000
VERSION     DASQWN010000044.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2459)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2459)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2459
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1099802"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(39..>2459)
                     /locus_tag="VE686_00855"
     CDS             complement(39..>2459)
                     /locus_tag="VE686_00855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009493332.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3772 domain-containing protein"
                     /protein_id="HYY83029.1"
                     /translation="AAPPPLGSASPAPVASAESRAARAKLDAYKAELDQKEAALQRQR
                     LTGAELQTLRQEIDPVAEGIRAIVDDFGPRVDGAKARLDQLGPKPPEEAQPESPDVAR
                     ERTAREAALADFGETQRLAKTLLVQAEQLTTQISDRRRGAFARALLERTSGILSPDLW
                     SAVVAALPRELRALRTVTDDWFTLVAARASFGALMLVGLAIGVAVALYVGRRHLLPRL
                     VVRDPAAVDPSRRRRLLSALGVFAIGALPAAAGSWIVYAALEAVGFLPPRIQPFAASV
                     LSGLAFVAFVKALADALLADGHASWRVIAVSDAAAARTAHFAIGLSAVYAIGKALEAL
                     NTGIAAALPISVATRGVAAFACALVVAELLRRFATTTSEEEASLGPYVATEPESGGPM
                     RLLGWIAVAAIIAAALVGYVALASFLVDQLVWVGILFGALLLSLQLVDEFIGGTLSGR
                     TRVATTLQANTGLRRRALEQIGVLATGIARLVLIVVAVVLALAPWGVDSADVAGSIRA
                     AFFGVTIGGVTISLSTVGISCLVFALVLVVTRVIKRWLDTTFLPATDLDAGLRNSIST
                     AFGYLGLFVAAALGFAYLGLSLDKIAIVAGALSVGIGFGLQSIVNNFVSGLILLWERP
                     IRVGDLIVVGDGEGYVRRISVRATEIETFDRSTIIVPNSNLISGTVRNRVRGDRTGRV
                     IVSVSVLRSTDPAQAAEILTRCAGQHVDVLKEPPPRVVFKKIGDAMLEFDLVCYVADV
                     DFQMRVMSDLNFAVFACLTEAKIIPPLGPPAMDVKGLGGVETALDHIAQAIGSAAATP
                     SEPGPTRR"
BASE COUNT          414 a          808 c          936 g          301 t
ORIGIN      
        1 gcgcagcgcc gccgtcaaag ccggcgagca gtacaagatc accgccgagt agggccgggt
       61 tccgacggcg tcgcagcggc gctgccgatc gcctgggcga tgtggtcgag cgccgtctcg
      121 acgcctccga ggcccttcac gtccatggcc ggcggtccga gcggcgggat gatcttcgcc
      181 tcggtgagac aggcgaagac ggcgaagttc aggtcgctca tgacgcgcat ttggaaatcc
      241 acgtcggcga cgtagcagac gaggtcgaat tcgagcatgg cgtccccgat cttcttgaag
      301 acgacgcgcg ggggcggctc tttcaggacg tcgacatgct ggcccgcgca gcgcgtcagg
      361 atctcggccg cctgggccgg atcggtgctg cgcaagacgc tgacgctgac gatgacccgg
      421 ccggtgcggt cgccgcgcac ccggttgcgc accgtgccgg aaatcaggtt cgagttcggg
      481 acgatgatgg tcgagcggtc gaaggtctcg atctcggtcg cgcgcacgct gatgcgccgg
      541 acatagccct cgccgtcgcc gacgacgatg aggtcgccga cccggatcgg gcgctcccac
      601 aagaggatca ggcccgagac gaagttgttg acgatcgact gcaggccgaa gccgatgccg
      661 accgagaggg cgcccgccac gatggcgatc ttgtcgagcg agaggccgag gtaggcgaac
      721 ccgagcgccg ccgcgacgaa caggccgaga tagccgaacg ccgtgctgat cgagttgcgc
      781 aggccggcat cgaggtcggt ggcgggcagg aatgtcgtgt cgagccagcg cttgatgacg
      841 cgcgtgacca ccaggacgag ggcgaacacg aggcacgaga tgccgaccgt cgacagcgag
      901 atggtgacgc cgccgatggt gacgccgaag aaggccgccc tgatcgagcc ggcgacatcg
      961 gccgagtcga cgccccaggg agcgagggcc agcacgaccg ccacgacgat cagcacgagg
     1021 cgcgcgatgc cggtcgcgag cacgccgatc tgttccagcg cgcgccttct caggccagtg
     1081 ttggcctgga gcgtcgtggc gacgcgggtc cggcccgata aagtgccgcc gatgaactcg
     1141 tcgacgagtt gcagcgatag gagcaaggcg ccgaagagga tgccgaccca gacaagctgg
     1201 tcgacaagga acgacgcgag cgcgacgtag ccgacaaggg ctgcggctat gatggccgcg
     1261 acggcgatcc agccgagcag ccgcatgggc ccgccgctct cgggctccgt cgcgacgtag
     1321 gggccgagag aggcttcctc ctcgctcgtc gtcgtcgcga agcggcgcag gagctcggcc
     1381 accacgaggg cgcaggcgaa tgccgcgacg ccacgggtcg cgacgctgat cggcagggcg
     1441 gcggcgatgc ccgtgttcaa ggcttcgaga gccttgccga tggcgtacac ggcgctgagg
     1501 ccgatggcga agtgggccgt cctggccgcg gccgcatccg acaccgcgat gacgcgccac
     1561 gaagcatggc cgtcggccag caaggcgtcg gcgagcgcct tcacgaaggc cacgaaggcg
     1621 aggccggaca ggacggaggc cgcgaacggc tggatgcggg gcggcaggaa gccgacggcc
     1681 tcgagagccg cataaacgat ccagctgccg gcggcggcgg gcagggcgcc gatcgcgaag
     1741 acgccaaggg ccgagagcag gcgcctgcgc cggctcggat ccacggcggc cgggtcgcgc
     1801 acgacgaggc gcggcaggag atggcgccgg ccgacgtaca gggcgacggc aacaccgatg
     1861 gcgagcccga caagcatcaa agcgccgaac gacgcacggg cggcgacgag agtgaaccag
     1921 tcatccgtca cggtgcgcag ggcccgcagc tcgcgcggga gcgccgcgac gaccgcgctc
     1981 cacagatcgg ggctgaggat gccggaggtg cgctcgagga gcgcgcgcgc gaaggcgccg
     2041 cgccgccggt cgctgatctg cgtggtcagc tgctccgcct ggacgagcag ggtttttgca
     2101 aggcgctgcg tctcgccgaa gtcggcgagc gccgcctccc gcgcggtgcg ctcgcgggcc
     2161 acgtcggggc tctcgggctg ggcctcctcg gggggcttcg ggccgagctg gtcaagccgc
     2221 gccttggcgc cgtcgacccg cggaccgaag tcgtcgacga tcgcgcgaat gccctcggcg
     2281 acgggatcga tctcctggcg cagggtctgc agctcggccc cggtcaggcg ctgccgctgg
     2341 agcgcggctt ccttctgatc gagctcagcc ttgtaggcgt cgagcttggc gcgcgcggcg
     2401 cggctctccg ccgacgcgac gggggccggg gatgccgacc cgagcggagg cggcgcggc
//
LOCUS       DASQWN010000045         3257 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_500346, whole genome shotgun sequence.
ACCESSION   DASQWN010000045 DASQWN010000000
VERSION     DASQWN010000045.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 3257)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3257)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3257
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_500346"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            317..1090
                     /locus_tag="VE686_00860"
     CDS             317..1090
                     /locus_tag="VE686_00860"
                     /EC_number="2.7.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009764270.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003951 - NAD+ kinase activity [Evidence
                     IEA];
                     GO_process: GO:0006741 - NADP biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0019674 - NAD metabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD kinase"
                     /protein_id="HYY83030.1"
                     /translation="MARRFSAIAFVSSGTPEADAALATLCGRYPCADPEDADVIVALG
                     GDGLMLQTLHRFLGKAKPIYGMNKGTVGFLMNDFHPDDLEDRLEAAQRSVVHPLLMTV
                     RDVKGETHTARAINEVSMLRQIHQAAKLTISVDGRVRLQELVADGILVATPAGSTAYN
                     LSVGGPILPLNAPLLAVTPISAFRPRRWRGALLPDRAQIRIDVNEPEHRPVSAVADHT
                     EFRSVTQVDVSMDRSLDLVMLHDPGHSLDERILREQFGF"
     gene            complement(1094..2305)
                     /locus_tag="VE686_00865"
     CDS             complement(1094..2305)
                     /locus_tag="VE686_00865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012335941.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2336 domain-containing protein"
                     /protein_id="HYY83031.1"
                     /translation="MIIKRFLLWSRTAPPAQRAAAIGALCRAYVDGELELNDRFEAET
                     AMTAMLDDASPLVRRAVAEALADSAEAPRHVVLGLASDQSDIAATVLARSPLLADPDL
                     VDCVAIGDDLVQTAVARRRDVSAAVSGALAEIGGAEAVAALLDNRGAMISDGSLSRIV
                     DRLGSDATVREALLARDDLPLDIRQAVAHALSRSLAAFVAECGWLSPERSERATREAR
                     EKTTVDLSGVARANDVRRLVSHLRTSAQLTPALILRALLSRALPFAEAAFADLSGLPV
                     KRVSRLMQDRHGSGFTALYRRAGLPDRLRPAFAAAVAATRGHHAGQPSVPQLSRRVIA
                     DTLMACATLPARDGAAITALLRRYDVEAAREEARELAGVLADEAALASILRHMPELIE
                     DELRPERLLAA"
     gene            2417..2908
                     /locus_tag="VE686_00870"
     CDS             2417..2908
                     /locus_tag="VE686_00870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019403237.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016829 - lyase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MaoC family dehydratase"
                     /protein_id="HYY83032.1"
                     /translation="MSDSPSPTPHPRGGLYFEDFTVGSSLRHRLTRTVTQMDNMLFSN
                     MTLNPQPLHIDAHFCATETEWGRPLMNSLFTLGLMIGISVNDTTVGTTIGNLGMSEVK
                     FPAPLFEGDTVSVTTEVAAKRESRSRPDAGIVDFVHRAYKQDGTLVAECRRQAFMRKR
                     PAA"
     gene            2910..>3257
                     /locus_tag="VE686_00875"
     CDS             2910..>3257
                     /locus_tag="VE686_00875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015927049.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aldolase/citrate lyase family protein"
                     /protein_id="HYY83033.1"
                     /translation="MRSLLFVPGDSARKLDKAMQSGADALILDLEDSVAPSGKAAARK
                     VTAEFMAATAKEPKRPRLIVRVNALTTGMTDDDLDGVMAGAPDAILLPKTVGGADVAH
                     LGAKLAVREAEFGF"
BASE COUNT          507 a         1167 c         1117 g          466 t
ORIGIN      
        1 gggcgccgca gcggcgggcg gcgcggtccc cggcgcaggt gcggaactct gctgtgcgct
       61 cgacgaaccg gctgcaagca atgacagcgc caaggcggca gccacaagtc ctctcatgat
      121 gttccctccc ctgttgttgg gcgcaggcta gcccctcggg cgtgcgtggc aactcacgtc
      181 gtgttgatct ggcccgcgcc gggctccccc cgcgatgggt gctggacgcg acacgtccgc
      241 tccatgctat gtgtcgtcgt tcgcccgcgc cgtgcgcggg agacggcagg tccgacgccg
      301 cagggtgagc aggttcatgg cgcgacgctt ctccgcgatc gctttcgtgt cgagcggaac
      361 gcccgaggcg gatgcggcgc tcgcgaccct ttgcggacgc tatccttgtg ccgatcccga
      421 ggacgccgac gtcattgtgg ccctcggcgg cgacggcctg atgctgcaga cccttcaccg
      481 ctttctcggc aaggcgaagc cgatctacgg catgaacaag gggaccgtcg ggttcctgat
      541 gaacgacttc catcccgacg acctcgagga ccggctcgag gctgcgcaac gcagtgtcgt
      601 gcacccgctg ctcatgaccg tgcgcgacgt caaaggcgaa acccacaccg cccgcgccat
      661 caacgaggtc tcgatgctgc gccagatcca ccaggcggcg aagctcacca tctcggtcga
      721 cggccgcgtc cgcctgcagg agctcgtggc ggacgggatt cttgtcgcga cgccggccgg
      781 gtccaccgcg tacaacctgt cggtcggcgg gccgatcctg cccctgaacg cgccgcttct
      841 cgcggtgacg ccgatctcgg ccttccggcc tcggcgttgg cgcggcgcgc tgctgccgga
      901 tcgcgcccag atccgcatcg acgtgaacga gcctgagcac aggcccgtga gcgccgtcgc
      961 ggaccacacc gagttccgct ccgtcacgca ggtggacgtt tcgatggatc gcagcctcga
     1021 cctcgtcatg ctgcacgacc cggggcacag cctggacgag cggatcctgc gcgagcagtt
     1081 cggcttctag gcgctacgca gccagaaggc gctcggggcg aagctcatcc tcgatcagct
     1141 ccggcatgtg gcgcagaatc gacgcaagcg cagcctcgtc ggcgaggacg ccggcgagtt
     1201 cgcgcgcttc ctcgcgcgcc gcctcgacat cgtagcgccg cagcagcgcc gtgatggccg
     1261 cgccatcccg cgcgggaagc gtcgcgcagg ccatcagcgt gtcggcgatg acccggcgcg
     1321 acagctgcgg cacgctgggc tgcccggcgt ggtgaccccg cgttgcagcg acggccgctg
     1381 cgaacgcggg acgcagccgg tccggcagtc cggcgcgccg gtacaaggcc gtgaaccccg
     1441 agccgtgccg atcctgcatg agcctcgaga cacgtttgac cgggagtccg gacaggtcgg
     1501 cgaaggcggc ttcggcgaaa ggcagcgcgc gggacaaaag tgcccgcagg atcagcgccg
     1561 gggtgagctg cgccgacgtg cgcaggtggg acacgagccg ccgcacatcg ttcgcccggg
     1621 cgacgcccga gagatcgacc gtcgtcttct cgcgcgcctc acgcgtcgcg cgctcgctcc
     1681 gctcggggct gagccagcca cactccgcga cgaacgccgc cagcgagcgc gagagcgcgt
     1741 gtgcgaccgc ctggcggatg tcgaggggca ggtcgtcacg ggcgagcagc gcctcgcgca
     1801 cggtcgcgtc cgatccgagc cggtcgacga tacgggagag gcttccgtcc gagatcatgg
     1861 cgccacggtt gtcgaggagc gccgcgaccg cctcggcgcc gccgatctcg gcgagcgcgc
     1921 ccgagaccgc ggccgagacg tcccgcctgc gcgcgaccgc tgtctggacg agatcgtcgc
     1981 cgatggcgac gcagtcgacg aggtcggggt cggcgagcag cggcgagcgc gcgagcacgg
     2041 tcgccgcgat gtcgctctgg tcgcttgcga gcccgagcac cacgtgccgc ggcgcttccg
     2101 ccgagtcggc cagggcttcg gcgaccgccc ggcgcacgag cggcgatgca tcgtcgagca
     2161 tcgccgtcat ggcggtttcg gcctcgaaac gatcgttcag ctcaagctcg ccgtcgacgt
     2221 aggcccggca gagggcgccg atggcggcgg cacgctgcgc cggaggcgcc gtgcgggacc
     2281 agaggaggaa acgcttgata atcatacgcc accaccgtca cgccggcgct cgcagcaagc
     2341 gcctccgaac tcgccctgga gcgtgcgccg gttatggtaa aggaacgata aagcttggct
     2401 cgcacgaggt cagaccatga gcgacagccc gtcccccacg ccgcacccgc gcggcggcct
     2461 ctacttcgag gatttcaccg tcgggtcctc cctgcggcac cggctcacgc gcacggtgac
     2521 ccagatggac aacatgctgt tctccaacat gaccctgaac ccgcagcccc tccacatcga
     2581 cgcgcacttc tgcgccacgg agaccgagtg ggggcgcccg ctcatgaact cgctgttcac
     2641 gctcggcctc atgatcggca tctcggtaaa cgacaccacg gtcggcacca ccatcggcaa
     2701 cctcggaatg tcggaggtga agttccctgc cccgctgttc gagggcgaca ccgtgagcgt
     2761 cacgacggag gtcgccgcca agcgcgagtc gcgctcccgg ccggacgcgg gcatcgtcga
     2821 cttcgtgcac cgggcctata agcaggacgg gacgctcgtc gccgagtgcc gccgccaggc
     2881 tttcatgcgc aagcgcccgg cggcctgaca tgcgttccct gctcttcgtc cccggcgaca
     2941 gcgcccgcaa gctcgacaag gcaatgcaat cgggcgccga cgcactcatc ctcgacctgg
     3001 aggattcggt ggcgccgtcg ggcaaggcgg cggcgcgaaa ggtcacggcg gagttcatgg
     3061 ccgccaccgc caaggagccg aagcggcctc gcctcatcgt gcgggtcaac gcgctcacga
     3121 ccggcatgac ggacgacgat ctcgacggcg tcatggccgg cgcgcccgac gcgatcctct
     3181 tgcccaagac cgtcggcggc gctgacgtgg cgcacctcgg cgccaagctt gccgtgcgcg
     3241 aggccgagtt cggattt
//
LOCUS       DASQWN010000046         5394 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_603905, whole genome shotgun sequence.
ACCESSION   DASQWN010000046 DASQWN010000000
VERSION     DASQWN010000046.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 5394)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5394)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5394
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_603905"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1048)
                     /locus_tag="VE686_00880"
     CDS             complement(<1..1048)
                     /locus_tag="VE686_00880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017992969.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HYY83034.1"
                     /translation="MSGRGRVHFEGITKMHGTFRALKGVDFEIEPGEFFALLGPSGSG
                     KSTTLRILAGLDMPTSGRVVVDGKDVTAVAASERDVAMVFQSYALYPHMTVFQNIAFP
                     LEMAKLPKAEIPGAVQEAARKVKIEHLLNRKPGQLSGGQQQRCALARAIVRKARLFLL
                     DEPLSNLDAKLRLETRVELKKLQRSLGVTAVYVTHDQEEAMTLADRMAVFMEGEIQQI
                     GRPTEVFARPNSVDVAAFIGSPPMNLIPARYAQGRATIAGGTLRTAVDMPGEQDVIIG
                     IRPGAVRFEEGGMPATVDLVEHLGDTAVLDLDLAGAAVRARVSDGPVPREGERVRITA
                     RPADVHVFDAASGQR"
     gene            complement(1045..1884)
                     /locus_tag="VE686_00885"
     CDS             complement(1045..1884)
                     /locus_tag="VE686_00885"
                     /inference="COORDINATES: protein motif:HMM:NF012738.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0008643 - carbohydrate transport [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="carbohydrate ABC transporter permease"
                     /protein_id="HYY83035.1"
                     /translation="MSGRRIRLFAGIAASSAFLLAWVFPIVWSVLNSFKTEQDVLAYP
                     PKLVFSPTLAAYRDVLFGSSSILPNLWSSFVISVGTTIVTIVLAVPAAYALARVRMPG
                     KRLAGFYVLATQMLPPVGIIIPYFLVLRNIGWIDTYQGMILIYLSFSLPFAIWLMVSY
                     FEEIPLEMEEAAYLDGASRLRALWRIIIPQVQGGIAVTVVFVFLNAWNEFLFAVVLSG
                     NTVRPVTIAMFNFVSVEQTLWAKLAAVSVLAMLPVIVLGVVAQKNIVKGLTVGAVKGG
                     GRR"
     gene            complement(1881..2768)
                     /locus_tag="VE686_00890"
     CDS             complement(1881..2768)
                     /locus_tag="VE686_00890"
                     /inference="COORDINATES: protein motif:HMM:NF012738.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter permease"
                     /protein_id="HYY83036.1"
                     /translation="MSDPGRDLARRERSFAAALLAPAFVVLMATTTFPLMYLVWTSAF
                     RIDLAMPFADGYVGLANYRDIVADPRFWSSLAVSLVYTGTTVALQLVIGLALALFVMR
                     MKRGQALFRLVAILPVVLSPAVVGMVWRTFMLAPEFGVVDYLAITAGLGSRNWLGDPT
                     LALVSVVAIHTWQWAPFAFMVLLASLAALPEDIYEAARLDRANAWQRFRRITLPLLRP
                     AIVMVVIMRTMVALTAFAAIFTVTGGGPGTATEILNLYVYRKSFTELSIGYGAALAVA
                     LLIVTVLISAVLFLVRRAR"
     gene            complement(2829..4223)
                     /locus_tag="VE686_00895"
     CDS             complement(2829..4223)
                     /locus_tag="VE686_00895"
                     /inference="COORDINATES: protein motif:HMM:NF024808.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter substrate-binding protein"
                     /protein_id="HYY83037.1"
                     /translation="MAARMPTRRQAMKLGLAASAAAVGAPALLRSASAQDANLAPYQS
                     AKMDWRQASGETITVAVIPASYFDNLITLAPQFEALTGIAVRFEKIPPAQIRQKSVID
                     LTSKTATYATHAADPMYYALYSANKWVEPLDPFLKDASLTDPAWFKADDIVPNWRAAN
                     TIDGKLLGIPYDGEVTLQVYRKDLYEAKGLKAADDLDAFVANAAAVHDPNNRLWGTAL
                     RGVAGAGQNVYIYSSLFREFGGDWFKGGKLAVNGPEAEAALAWYVDLMRKFAPAAAQN
                     WNWPDIADAFSQGTVASYIDAHSSASVVNNAEKSKVIGKVAYARWPKGPSGKRVSSIW
                     NWGFPINAALPDKRKKATWLFIQWAASEETQARTAHRFAGPAKRSGVNRTSMWRDPAY
                     VEVMRGFGDNFVDATLASLQNDTDVDWRPRVPQWPAVGDTLATAIQSALAGQATTKAA
                     LDEAQKRIEPMMRG"
     gene            4405..5265
                     /locus_tag="VE686_00900"
     CDS             4405..5265
                     /locus_tag="VE686_00900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011509498.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HYY83038.1"
                     /translation="MTPDVKTFFDKATGTATHVVHAGPGSAAAVIDSVLDFDAKSGRT
                     DHTSAEQVIAFVREQELTVEWLLETHVHADHLSAAPYLRTRIGGRIGIGARVIEVQEK
                     FGKIFNFGLHADGEGRDFDRLFDDGDRFGIGNAEVQVMAVPGHTPADIAYLIGDAVFV
                     GDTIFMPDCGSARADFPGGDARTLYRSAKRILALPPETRIFICHDYPPDGREVRFETT
                     VGEERAGNKHLRDGIGEDEFVEMRNARDKTLAMPALMIPSVQVNMRAGHMPPPEDNGV
                     SYLKVPINVL"
BASE COUNT          899 a         1816 c         1858 g          821 t
ORIGIN      
        1 gccgctggcc gctggccgcg tcgaagacgt ggacgtcggc gggccgggcc gtgatcctca
       61 cgcgctcgcc ttcgcgcggc accgggccgt cgctcacccg ggcgcggacc gccgcccccg
      121 caaggtcgag gtcgagcaca gccgtatcgc cgagatgctc gacgagatcg accgtcgccg
      181 gcatgccgcc ctcctcgaag cgcaccgctc ccggcctgat cccgatgatg acgtcttgct
      241 caccgggcat gtcgacggcc gtccgcaacg tcccgcccgc gatggtggcg cgtccctgtg
      301 cgtagcgggc cgggatgagg ttcatgggcg ggctgccgat gaaggccgca acgtcgacgg
      361 agttcggccg cgcgaagacc tcggtcggcc gcccgatctg ctggatctcg ccctccatga
      421 acaccgccat gcggtcggcg agcgtcatcg cctcctcctg gtcgtgcgtc acgtagacgg
      481 cggtgacccc gagcgagcgt tgcagcttct tgagctcgac ccgggtctcg agccgcagct
      541 ttgcgtcgag gttcgacagg ggctcgtcga ggaggaacag ccgagccttg cgcacgatgg
      601 cccgcgcaag cgcgcagcgc tgctgctgcc cgccggagag ctggcccggc ttgcgattga
      661 gcaaatgctc gatcttcacc ttgcgcgccg cttcctggac ggccccgggg atctcggcct
      721 tcgggagctt cgccatctcg agcgggaagg cgatgttctg gaacaccgtc atgtgcgggt
      781 agagggcgta gctctggaac accatggcga cgtcgcgctc gctcgccgcg acggcggtga
      841 cgtccttgcc gtcgacgacc acccggcccg atgtcggcat gtcgaggccc gcgaggatgc
      901 gcagcgtcgt gctcttgccg gaaccggagg ggccgagcag cgcgaagaac tctccgggct
      961 cgatctcgaa gtcgacccct ttcagcgcac ggaaggtacc gtgcatcttg gtgatgccct
     1021 cgaagtgcac ccgtccgcgc ccgctcatcg ccgaccgcct cccttgacgg cgccgaccgt
     1081 gaggcccttg acgatgttct tctgcgccac gacgccgagc acgatgacgg gcagcatggc
     1141 gaggaccgag actgcggcga gcttcgccca caaggtctgc tcgacggaga cgaagttgaa
     1201 catggcgatg gtcaccgggc gaacggtgtt gccgctgagg accaccgcga agaggaactc
     1261 gttccacgcg ttgaggaaga cgaagacgac ggtcaccgcg atgccgccct ggacctgggg
     1321 gatgatgatc cgccacagcg cgcgcagccg gctggccccg tcgaggtagg cggcctcctc
     1381 catctcgagc gggatctcct cgaagtagga gaccatcagc cagatcgcga aaggcagcga
     1441 gaacgacagg tagatcagga tcatgccctg ataggtgtcg atccagccga tgttccgcag
     1501 gaccaggaag tacgggatga tgatgccgac gggcggcagc atctgggtcg cgagcacgta
     1561 gaagcccgcg agccgcttgc cgggcatgcg cacccgcgcc agcgcatagg ccgccggcac
     1621 cgcgagcacg atggtgacga tggtcgtccc gaccgagatg acgaagctgc tccacaggtt
     1681 cggcaggatc gaggacgagc cgaacaacac gtcgcggtac gccgcaaggg tcggcgagaa
     1741 gacgagcttc ggcgggtagg cgaggacgtc ctgctcggtc ttgaaggagt tcaggacgct
     1801 ccacacgatc gggaagaccc acgcgagcag gaacgccgag gaggccgcga tgccggcgaa
     1861 cagccgtatc ctgcgcccgc tcaccgcgcc ctcctgacga ggaagagcac ggcggagatg
     1921 aggacggtaa cgatcagcag cgcgaccgcg agcgccgcgc cgtagccgat cgacagctcc
     1981 gtgaaggact tgcggtagac gtagaggttc aggatctccg tcgccgttcc cggcccgccc
     2041 cccgtgacgg tgaagatcgc cgcgaacgcg gtcagcgcca ccatggtgcg catgatgacg
     2101 accatgacga tcgccggccg caacagcggc agggtgatgc gccggaagcg ctgccaggcg
     2161 ttggcgcggt cgaggcgggc cgcctcgtag atgtcttccg ggagcgccgc gaggctcgcg
     2221 agcaggacca tgaaggcgaa gggcgcccac tgccaggtgt ggatcgccac cacggagacg
     2281 agagcgagcg tcgggtctcc gagccagttc ctgctgccga gcccggccgt gatggcgagg
     2341 taatcgacga cgccgaactc cggcgcgagc atgaacgtgc gccacaccat gccgacgacc
     2401 gccggcgaga ggacgaccgg caggatggcc accagccgga acagcgcctg cccgcgcttc
     2461 atgcgcatga cgaacagcgc cagggcgagg ccgatgacga gctgcagggc gacggtcgtc
     2521 ccggtataga cgaggctcac ggcgagcgac gaccagaacc gcgggtcggc aacgatgtcg
     2581 cggtagttgg ccaatcccac gtagccgtcc gcgaacggca tcgcgaggtc gatgcggaag
     2641 gcgctcgtcc agacaaggta catgagcggg aacgtcgtgg tcgccatcag caccacgaac
     2701 gccggcgcga gcagcgccgc cgcgaacgag cgctcgcgcc gggcgagatc cctgcccgga
     2761 tcgctcatgc cgcgtgccgc aactcgcccg gacaagagcc cggccgcaga cgcctccgcc
     2821 acgctgcttt agccgcgcat cataggctca atgcgcttct gcgcctcgtc gagggcggcc
     2881 ttcgtggtcg cctgcccggc aagcgccgac tggatcgccg tcgcgagcgt gtcaccgaca
     2941 gcgggccact gcggcacgcg cggccgccag tccacgtctg tgtcgttctg caacgacgcg
     3001 agcgtggcgt cgacgaagtt gtcgccgaag ccgcgcatga cttcgacgta ggccgggtcg
     3061 cgccacatcg aggtgcggtt cacgcctgag cgcttggccg gccccgcgaa gcggtgcgcc
     3121 gtgcgcgcct gcgtctcctc gctcgcggcc cactggatga agagccaggt cgccttcttg
     3181 cgcttgtccg gcagggcggc gttgatgggg aagccccagt tccagatcga gctcacgcgc
     3241 ttgcccgagg ggcccttggg ccagcgggca taggcgacct tgccgatgac cttcgatttc
     3301 tcggcgttgt tgacgaccga ggccgatgaa tgggcatcga tgtaggatgc gacggtccct
     3361 tgcgagaagg cgtcggcaat gtccggccag ttccagttct gggctgccgc cggcgcgaac
     3421 ttgcgcatca ggtcgacgta ccaggcgagc gcggcctcgg cctccggtcc gttgacggcg
     3481 agcttgccgc ccttgaacca atcgccgccg aactcccgga acagggacga gtagatgtag
     3541 acgttctggc ccgcgcccgc gacgccgcgc agggccgtgc cccagaggcg gttgttcggg
     3601 tcgtgcaccg ccgcggcgtt ggccacgaag gcgtcgaggt cgtcggcggc cttcaggccc
     3661 ttagcctcgt agagatcctt gcggtagacc tggagcgtca cctcgccgtc gtaagggatg
     3721 ccgaggagct tgccgtcgat ggtgttcgcc gcgcgccagt tcgggacgat gtcgtcggcc
     3781 ttgaaccacg ccgggtcggt gagcgacgcg tccttgagga acgggtcgag cggctcgacc
     3841 catttgttcg ccgagtagag cgcgtagtac atcgggtccg ccgcgtgggt cgcgtaggtg
     3901 gcggtcttcg aggtgaggtc gatgacgctc ttctgccgga tctgcgccgg cgggatcttc
     3961 tcgaagcgga cggcgatgcc cgtgagcgcc tcgaactgcg gcgccagggt gatgagattg
     4021 tcgaagtagc tcgccgggat gacggcgacc gtgatggtct cgcccgacgc ttggcgccag
     4081 tccatcttcg ccgactgata cggcgcgagg ttcgcgtcct gcgctgaggc ggaccgcagg
     4141 agcgccggcg ctcccaccgc ggcggccgag gccgcgagcc cgagcttcat cgcctgccgt
     4201 ctcgtcggca tcctggcagc catcggcgtg tcctccccgg cttagcgcct ttatgtcagg
     4261 acattccgtg cgttgttatg acgagtcaag cgtacccccc ggcgcagagg ctccctcgga
     4321 tgcgcctatt gcagttcgat cgcgacactt cgaggcggac caaacatcgg ctacactgcg
     4381 tagcgagagc ccggagggcc cccgatgacg ccggacgtca aaaccttctt cgacaaggca
     4441 accggaaccg cgacgcacgt cgtgcatgcg ggaccgggca gcgcggcagc ggtgatcgat
     4501 tcggtcctcg acttcgatgc caagtccggc cggaccgatc atacctcggc cgagcaggtc
     4561 attgccttcg tgcgcgagca ggagctcacg gtggagtggc tcctcgaaac gcacgtccac
     4621 gccgatcatc tctcggctgc gccctacctg cgcacccgca tcggcgggcg tatcggcatc
     4681 ggcgccaggg tgatcgaggt gcaggagaag ttcggcaaga tcttcaactt cggcctccac
     4741 gccgacggtg agggacgcga cttcgatcgg ctgttcgacg acggtgaccg cttcggcatc
     4801 ggcaacgccg aggtgcaggt tatggccgtg ccggggcaca cgcctgccga cattgcctac
     4861 ctcatcgggg atgcggtgtt cgtcggcgac accatcttca tgccagactg cggaagcgct
     4921 cgtgccgact tccccggtgg agacgcgcga acgctctacc gctccgccaa gcgcatcctc
     4981 gcgctcccgc ccgagacccg gatcttcatc tgccacgact acccgccgga cggccgggag
     5041 gtgcgcttcg aaacgaccgt cggcgaagag cgggccggca acaagcatct gcgcgacggc
     5101 atcggcgagg acgagttcgt ggagatgcgg aacgcccgcg acaagacgct ggcgatgccc
     5161 gctctgatga tcccctccgt gcaggtcaac atgcgcgccg gccacatgcc gccgcctgaa
     5221 gacaacggcg tctcctacct gaaggtaccg atcaacgtgc tctagggatg cagttgctcg
     5281 acgctgtcac cgcgccgcga aggcgacgag aaccccgttc gcggcggcgg gcggcacgac
     5341 gatgccggag cctgcccgca tgccggcgcc gccggccgcc ttcgccgcgg cctc
//
LOCUS       DASQWN010000047         4004 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_500421, whole genome shotgun sequence.
ACCESSION   DASQWN010000047 DASQWN010000000
VERSION     DASQWN010000047.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 4004)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4004)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4004
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_500421"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..339)
                     /gene="hisI"
                     /locus_tag="VE686_00905"
     CDS             complement(<1..339)
                     /gene="hisI"
                     /locus_tag="VE686_00905"
                     /EC_number="3.5.4.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009489446.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004635 - phosphoribosyl-AMP
                     cyclohydrolase activity [Evidence IEA];
                     GO_process: GO:0000105 - histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosyl-AMP cyclohydrolase"
                     /protein_id="HYY83039.1"
                     /translation="MSSAVPFAPPGGKAELEEGRAFTPRFGPDGLITCVTADAGSGAV
                     LMVAHMNAEALARTLATGEAWYWSRSRGELWRKGATSGQLQTVVEMRVDCDQDAVWLK
                     VRVGGDGGCCH"
     gene            complement(346..963)
                     /gene="folE"
                     /locus_tag="VE686_00910"
     CDS             complement(346..963)
                     /gene="folE"
                     /locus_tag="VE686_00910"
                     /EC_number="3.5.4.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018264614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003934 - GTP cyclohydrolase I activity
                     [Evidence IEA];
                     GO_process: GO:0042559 - pteridine-containing compound
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:0046654 - tetrahydrofolate biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTP cyclohydrolase I FolE"
                     /protein_id="HYY83040.1"
                     /translation="MDAAVRSSLPRDPGSPQDRPTREEAEAAVRTLIRWAGDDPEREG
                     LRDTPSRVAAAYEELYAGYAEDPAQVLDRVFEEVEAYGDMVVVRDIPFHSQCEHHMLP
                     FHGVVHVAYYPSTGVVGLSKLARVVDVFARRLQTQEAMTVQIAEAIDEVLKPRGVAVL
                     ADAEHMCMSMRGVRKEGSRTLTTRFTGVFAEDPAEQVRFLTLVRG"
     gene            1105..1551
                     /locus_tag="VE686_00915"
     CDS             1105..1551
                     /locus_tag="VE686_00915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008961319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster assembly scaffold protein"
                     /protein_id="HYY83041.1"
                     /translation="MLDDIYNRKILELAADIPRLGRLAEPDASATAHSKLCGSTVTVD
                     LKVEGDTVTDFAHDVKACALGQASSSIMARHVVGSSAQELREVRAAMRRMLKEDGPAP
                     SGKWEDLAVLEPVRAFKARHASTLLTFDAVVDAIERARGQQSQAAG"
     gene            complement(1554..2390)
                     /locus_tag="VE686_00920"
     CDS             complement(1554..2390)
                     /locus_tag="VE686_00920"
                     /inference="COORDINATES: protein motif:HMM:NF018352.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MipA/OmpV family protein"
                     /protein_id="HYY83042.1"
                     /translation="MRSNLVLAAGFSLLLVGAARAADVAEVPRADAMFAPVPVTSDEW
                     IVTVRGTVSIAPRFEGSDRFGLFAFPGLGFRRASQPVQFSAPDDGADFAVYRQNGFSI
                     GPVARFRPGRYLNDDARLFGLHDVRWSVEPGVFVEYWATPEIRARAELRHGVRGREGF
                     VADFGVDWVSRLGAFTAAVGPRLRLADAAYHRDYYGVSFAESALSGRFAPYRPGGGIN
                     SVGAAASLGYQWNQAWGTTVFAGYRRLMSDAADSPIVRGIGSPNQFEVGASVSYSFRT
                     GL"
     gene            2428..2865
                     /gene="yidD"
                     /locus_tag="VE686_00925"
     CDS             2428..2865
                     /gene="yidD"
                     /locus_tag="VE686_00925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008934051.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane protein insertion efficiency factor
                     YidD"
                     /protein_id="HYY83043.1"
                     /translation="MSVKQHSRVFLDSPARRKPPHARAARLLAHGLIRAYQLTLSGLI
                     GRQCRHLPSCSEYADEAIQRHGVWAGGWMGVARICRCGPGGTSGLDFVCEEVPPAARW
                     YAPWRYGRWRGVNADMPYAWVAHRRRAGYSQPHTPAYLPRLQE"
     gene            2880..>4004
                     /locus_tag="VE686_00930"
     CDS             2880..>4004
                     /locus_tag="VE686_00930"
                     /EC_number="6.1.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012253760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0000049 - tRNA binding [Evidence IEA];
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004812 - aminoacyl-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0004829 - threonine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016874 - ligase activity [Evidence IEA];
                     GO_process: GO:0006435 - threonyl-tRNA aminoacylation
                     [Evidence IEA];
                     GO_process: GO:0043039 - tRNA aminoacylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="threonine--tRNA ligase"
                     /protein_id="HYY83044.1"
                     /translation="MITLTFPDGAQRQFEPGTTGRQIADGISKSLTKRTVAMALDGAL
                     TDLADPIARDARIEFVSRDDPRALELIRHDAAHVLAEAVQALYPGTQVTIGPVIENGF
                     YYDFARPEPFTPEDFPAIEAKMREIIARDRPFTKELWSRDKAREVFRDKGESFKLELI
                     DAIPQGEDLKIYAQGEWFDLCRGPHMTSTGKVGSAFKLMKVAGAYWRGDSRNPMLTRI
                     YGTAWATQEDLDRYIKQLEEAERRDHRRLGREMDLFHFQEEGPGVVFWHPKGWTMFQE
                     LVSYMRRRLKGDYDEVNAPQILDKALWETSGHWDWYRENMFVTKTEDERVFAIKPMNC
                     PGHVQIFKHGLKSYRDLPLRLAEFGAVSRYEPSGALHGLMR"
BASE COUNT          628 a         1428 c         1400 g          548 t
ORIGIN      
        1 gtgacagcag ccgccatcgc cgccgacgcg caccttcagc cagacggcgt cctggtcgca
       61 gtcgacgcgc atctcgacca cggtctgaag ctggccgctg gtcgcgccct tgcgccacag
      121 ctcgccgcgc gagcgcgacc agtaccaggc ctcgccggtc gcgagcgtgc gcgcgagggc
      181 ctccgcgttc atgtgcgcga ccatcagcac cgccccgctg ccggcgtccg ccgtgacgca
      241 ggtgatgagg ccgtcgggcc cgaagcgcgg cgtgaaggcg cgaccttcct cgagctccgc
      301 cttgcctccc ggcggggcga acgggacagc ggacgacatc agggctcagc cgcggacgag
      361 ggtgaggaag cggacctgct cggcagggtc ttccgcgaag acgcccgtga agcgggtggt
      421 gagggtccgg gagccttcct tgcggacccc gcgcatggac atgcacatat gctcggcgtc
      481 ggcgagcacc gcgacgccgc gaggcttgag cacctcgtcg atcgcctcgg cgatctgcac
      541 ggtcatcgcc tcctgggtct gcaggcggcg cgcgaacacg tccacgacgc gggcgagctt
      601 cgacaagccg acgacgccgg tgctcggata ataggccacg tgcacgacgc cgtggaacgg
      661 cagcatgtgg tgctcgcact gggagtggaa cgggatgtcg cgcacgacga ccatgtcgcc
      721 gtaagcctcg acctcctcga acacccggtc gagcacctgc gccgggtcct cggcgtatcc
      781 ggcgtagagc tcctcgtagg ctgcggcgac ccggctcggc gtgtcgcgca ggccctcccg
      841 ctcggggtcg tcgccggccc agcggatcag ggtgcggacg gcggcctcgg cctcctcgcg
      901 ggtcggacgg tcctggggag agcccgggtc ccgcggcagg gatgagcgaa ccgcagcgtc
      961 catgaagcct cgctcctcaa gcccttgggg caggcgcggc acccatgcgg ccgacgcctg
     1021 atggcgggtc ctcgtcgaac cctgccctaa cccctatatt gcgctcagag ccctgcgctg
     1081 caacggcgac acccgcgacc cgcgatgctg gacgacatct acaaccgcaa aatcctcgag
     1141 ctcgccgccg acatcccgcg gctcgggcgc ctcgccgagc ccgacgcgag cgcgacggcg
     1201 cactcgaagc tgtgcggctc gaccgtgacg gtcgacctca aggtcgaggg ggacacggtc
     1261 acggacttcg cgcacgacgt gaaggcctgc gcgctcggcc aggcctcgtc gtcgatcatg
     1321 gcccgccatg tcgtcggctc gtcggcgcag gagttgcgcg aggtgcgcgc cgccatgcgc
     1381 cgcatgctca aggaggacgg tccggcgccg tcgggcaagt gggaggacct ggccgtgctc
     1441 gagccggtgc gcgccttcaa ggcccggcac gcctcgaccc tgctgacctt cgacgccgtc
     1501 gtggacgcga tcgagcgcgc ccgcgggcag cagtcgcagg cggccgggta ggcctacaat
     1561 ccggtgcgga aggagtagct gacgctggcg ccgacctcga actggttcgg cgagccgatg
     1621 ccgcgcacga tcgggctgtc cgcggcgtcg ctcatgaggc ggcggtagcc ggcgaacacc
     1681 gtggtgcccc aggcctggtt ccactggtag ccgagcgagg ccgcagcgcc gacggagttg
     1741 atgccgccgc ccggccggta gggcgcgaag cggccgctca gggccgactc ggcgaagctc
     1801 acgccgtagt agtcccggtg gtaggcagcg tcggcgaggc gcaggcgcgg cccgacggcc
     1861 gccgtgaagg cgccgaggcg gctcacccag tcgacgccga agtcggcgac gaagccttcg
     1921 cggccgcgca cgccatggcg cagctcggcc cgggcgcgga tctcgggcgt cgcccagtac
     1981 tcgacgaaga cgccgggctc gacggaccag cgcacgtcgt gcaggccgaa caggcgcgcg
     2041 tcgtcgttga ggtatcgccc gggccggaag cgcgccaccg ggccgatgct gaagccgttc
     2101 tgccggtaga cggcgaagtc ggcgccgtcg tcgggggcgc tgaactgcac cggctggctg
     2161 gcgcgccgga agccgagccc cgggaaggcg aacaggccga accggtccga gccctcgaac
     2221 ctcggtgcga tgctgacggt gccccgcacc gtgacgatcc actcgtccga cgtcaccggg
     2281 acgggcgcga acatggcatc ggcgcggggg acctccgcca catcggctgc tcgcgctgcc
     2341 ccgaccagaa gcagggaaaa gccggcggcg agcacgaggt tggagcgcat ggtcggaact
     2401 cttacactac gaagccaggc tggcgcgatg tccgttaagc aacactcaag agttttcctc
     2461 gactcgcccg caaggcgcaa gccgccgcac gcgcgggcgg cgcggctcct cgcgcacggc
     2521 ctcatccgcg cctaccagct caccctgtcg ggcctgatcg ggcgccagtg ccgccatctg
     2581 ccgtcctgct cggagtacgc cgacgaggcg atccagcgcc acggcgtctg ggccgggggc
     2641 tggatgggcg tcgcccgcat ctgccgttgc ggcccgggag gcacctccgg cctcgacttc
     2701 gtctgcgagg aagtgccgcc tgcggcgcgg tggtacgcgc cctggcgcta cggccgctgg
     2761 cgcggcgtca acgccgacat gccgtatgca tgggttgcac accggcggcg cgcgggctac
     2821 tcgcagccgc acacacccgc ttacctgcct cgtttgcagg agtgagccag gagctcttga
     2881 tgatcaccct gacgtttccc gacggcgcgc agcgtcagtt cgagcccggc accaccggcc
     2941 gccagatcgc cgacggcatc tcgaagtcgc tgaccaagcg cacggtggcc atggccctcg
     3001 acggggcgct caccgacctc gccgacccca tcgcgcgcga cgcccgcatc gagttcgtct
     3061 cccgcgacga tccgcgggcg ctggagctca tccgccacga cgcggcgcac gtgctcgccg
     3121 aggccgtgca ggcgctctat ccgggcaccc aggtgaccat cgggccggtg attgagaacg
     3181 gcttctatta cgacttcgcc cggcccgagc cgttcacgcc cgaggacttt ccggccatcg
     3241 aggccaagat gcgcgagatc atcgcgcgcg acaggccctt caccaaggag ctgtggagcc
     3301 gcgacaaggc ccgcgaggtg ttccgggaca agggcgagag cttcaagctc gagctcatcg
     3361 acgccattcc gcagggcgag gacctcaaga tctacgcgca aggggagtgg ttcgacctgt
     3421 gccgcgggcc gcacatgacc tcgacgggca aggtcggctc ggccttcaag ctcatgaagg
     3481 tcgccggcgc ctactggcgc ggcgacagcc gcaacccgat gctgacccgc atctacggca
     3541 cggcgtgggc cacgcaggag gacctcgacc gttacatcaa gcagctcgag gaagccgagc
     3601 gccgcgacca ccggcgtctc gggcgtgaga tggacctctt ccacttccag gaggaggggc
     3661 cgggcgtggt gttctggcac cccaagggct ggaccatgtt ccaggagctc gtctcctaca
     3721 tgcgccggcg cctcaaaggc gactacgacg aggtcaacgc gccccagatc ctcgacaagg
     3781 ccctgtggga gacctcgggg cactgggact ggtaccggga gaacatgttc gtcaccaaga
     3841 ccgaggacga gcgagtcttc gccatcaagc cgatgaactg ccccggccac gtgcagatct
     3901 tcaagcacgg cctgaagtct taccgcgatc tgcctctgcg ccttgcggaa ttcggcgcgg
     3961 tgtcgcgcta cgagccgtcc ggcgcgctgc acggcctcat gcgc
//
LOCUS       DASQWN010000048         2040 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1001300, whole genome shotgun sequence.
ACCESSION   DASQWN010000048 DASQWN010000000
VERSION     DASQWN010000048.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2040)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2040)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2040
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1001300"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1989)
                     /locus_tag="VE686_00935"
     CDS             complement(<1..1989)
                     /locus_tag="VE686_00935"
                     /inference="COORDINATES: protein motif:HMM:NF024589.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HYY83045.1"
                     /translation="MVGRDQELALMLERWQPAAAGEGQAVLLVGEAGIGKSRLVQATL
                     DTVAAGENITLRYQCSPHHTGTALWPIIQQLRFAAGLAPADSETANLDKLEVLLRQAA
                     ADIHEAVSMVAALLGIDAGQRYTVLNLSPQQQRARTLAVLVEQLLGLARRRPVLMVVE
                     DTHWIDPTTLELLGQALDRIAGARVLMLLTSRPDNQPSLGGHPHVTRLTLNRLGRTPT
                     EAIVARLTDGMSLPPAVLEEIAARTDGVPLFVEELTKAVLETGPTGSGGAVPTSLHAS
                     LMARLDRVPDVKEVAQTAACIGREFAYPLLAEVSPLPEAELQGALDRLAAAELVFRRG
                     MPPEASYTFKHALVRDAAHESLLKTRRKQLHAHIVQALEAQFPEVATAQPELLAHHCA
                     EGGLIERAVDYWFAAGERALRASANVEAIQHLSQGIRLLTSSLPDTPGRQRTELRFQI
                     SLGASLLATRGWAASEAVQAYRRADELCRALGDHVERFKVVLGLWFFYLTRGETQQAR
                     SLGDELFELAEQQNDDDLRLQALHAAWGICTWLGEFAAGREHAERGLALYSPAKHASH
                     ALTYGGHDPGVCGWARGGMDLWFLGYPDQADVYVRRAVALAEEIGHPPTVAHALNYGI
                     LCQQFRRDAATVRSWGERMASLAAEHGLALFEATAIAAH"
BASE COUNT          326 a          702 c          689 g          323 t
ORIGIN      
        1 gtgtgccgcg atcgcggtag cctcgaacag cgccagcccg tgctcggccg cgaggctggc
       61 catgcgctcg ccccagctgc gcactgtcgc tgcgtcgcgc cgaaactgct ggcacaggat
      121 gccgtagttg agggcgtgcg ccaccgtcgg cggatgtccg atctcctccg cgagcgccac
      181 tgcgcggcgg acgtatacgt ccgcctggtc cggatagccg aggaaccaca ggtccatgcc
      241 gccccgcgcc cagccgcaga cacccgggtc gtggccgccg tatgtcaggg cgtgcgatgc
      301 gtgcttcgcc ggactgtaga gagccagccc gcgttcggca tgctcccggc cggcggcgaa
      361 ctcgccaagc cacgtgcaga taccccacgc cgcgtggagg gcttgaaggc gcagatcgtc
      421 atcgttttgt tgctcggcca actcgaacag ctcgtcgccg agcgaccttg cctgctgggt
      481 ttccccacgc gttagataaa agaaccagag ccccagcacg actttgaagc gctcgacgtg
      541 gtcaccgagg gcacgacaca gctcatcggc acgacggtaa gcctgcaccg cctccgaggc
      601 tgcccacccc cgcgtcgcta ggagcgaggc gcccagcgag atctgaaatc gcagctccgt
      661 ccgctggcgc cccggtgtat cgggaagcga gctggtgagc aggcggatgc cttgcgagag
      721 gtgctggatg gcctcgacgt tggccgaggc gcgtagcgcg cgttcaccgg cagcaaacca
      781 ataatcgacc gcccgctcga tcaggccacc ctcggcgcaa tggtgcgcga gcagctcggg
      841 ctgggcggtc gccacctccg ggaactgtgc ctcgagtgcc tggacgatgt gggcgtgcag
      901 ctgcttccga cgtgtcttga gaaggctctc atgggcagcg tctcgcacca gcgcgtgctt
      961 gaaggtgtaa ctcgcctccg gcggcatgcc gcgccgaaag accaactcgg cggcggcgag
     1021 ccggtccagc gcgccctgca gttcagcctc gggcagaggc gagacctccg ccagaagcgg
     1081 ataggcgaac tcacgcccga tgcaggctgc tgtctgagcc acctccttga catccggcac
     1141 ccgatccagc cgagccatga gcgaggcgtg cagcgaggtc ggaacagccc ctcctgatcc
     1201 cgtcggtccg gtttccagca cggccttggt cagctcctcg acgaacagcg gcaccccgtc
     1261 ggtccgggct gcgatttcct ccaggaccgc gggcggcaag ctcatgccgt cggtcaggcg
     1321 cgcgacgatc gcttcggtcg gagtgcggcc gaggcggttg agcgtgagcc gcgtcacgtg
     1381 cgggtgcccg cccaggctcg gctggttgtc gggccggctc gtcagcagca tcagcacccg
     1441 cgcgccggcg atccggtcga gggcttggcc gaggagttcg agggtggtgg ggtcgatcca
     1501 gtgcgtatcc tccaccacca tcagcacggg tcggcggcgt gcgagcccga gaagctgctc
     1561 gaccagcacc gccagcgtgc gggcacgttg ctgctgcggg ctgaggttca gcactgtgta
     1621 acgttgccct gcatctatgc cgagcagtgc cgcaaccatg gacactgctt cgtgaatatc
     1681 cgccgctgcc tggcgtagca gcacctcaag cttgtcgaga ttggccgtct cactgtcagc
     1741 aggcgcgaga ccggcagcga agcggagctg ctggatgatc ggccacagcg ccgtgccggt
     1801 gtgatggggc gagcactgat agcgcagagt gatattctca cccgcggcga ccgtgtcgag
     1861 cgtggcctgg accaatcgcg atttgccgat gccggcctcg ccgaccagca gcaccgcctg
     1921 gccctcgccg gccgcggccg gctgccaccg ctcaagcatc agcgccagct cctgatcgcg
     1981 cccgaccatg ggcaacgccc ggcctgatcg ttgggcctcg aaacggctgc tcgtaggatg
//
LOCUS       DASQWN010000049         3504 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1398695, whole genome shotgun sequence.
ACCESSION   DASQWN010000049 DASQWN010000000
VERSION     DASQWN010000049.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 3504)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3504)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3504
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1398695"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..293)
                     /locus_tag="VE686_00940"
     CDS             complement(<1..293)
                     /locus_tag="VE686_00940"
                     /inference="COORDINATES: protein motif:HMM:NF045432.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA ligase"
                     /protein_id="HYY83046.1"
                     /translation="MAAKEEIELAGVRLTSPDKVLYPEQGITKRDLAEYAIAVADWML
                     PHVARRPITLVRCPTGRQKKCFYQRHAGSGVPSELSEVEISGFEESGAYLYIT"
     gene            complement(294..1373)
                     /locus_tag="VE686_00945"
     CDS             complement(294..1373)
                     /locus_tag="VE686_00945"
                     /EC_number="6.5.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018237518.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003910 - DNA ligase (ATP) activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent DNA ligase"
                     /protein_id="HYY83047.1"
                     /translation="MATARANRATGGGLSSLPLGIDTSPMEAKLVDSLPDDAGWQFEP
                     KWDGFRCLAFRGGDEVDLRAKSGKPLARYFPEVVEFVRALKPDRFVLDGELAIPTGDT
                     LSFDALQMRLHPAESRIRKLAHETPAILILFDILVTPDGGALLDALLGERRAALEAFF
                     ANAGQSDSLRLSPYTRDRKEAQRWLAKAGGALDGVIAKRLDGPYVSGERAMLKVKRMR
                     TADCVVGGFRYGTNSRVVGSLLLGLYDEEGRLDHVGFTSNIGADEKPALTKRLEALIE
                     PPGFTGDAPGGPSRWSTERTGEWQPLRPELVVEVRYDHVSGGRFRHGTRLVRWRPDKA
                     PRQCTFEQMQEEARPARLVAKMLEG"
     gene            complement(1437..2591)
                     /gene="nagA"
                     /locus_tag="VE686_00950"
     CDS             complement(1437..2591)
                     /gene="nagA"
                     /locus_tag="VE686_00950"
                     /EC_number="3.5.1.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003608450.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008448 - N-acetylglucosamine-6-phosphate
                     deacetylase activity [Evidence IEA];
                     GO_process: GO:0006040 - amino sugar metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylglucosamine-6-phosphate deacetylase"
                     /protein_id="HYY83048.1"
                     /translation="MTPALHAIAADCIFDGDTVHGEAAVLVARDTIVALVPQAEMPTG
                     ANIEQLPPGTWLAPGFIDVQVNGGGDVLFNDALDPEGIATMAAAHRRFGTTSLLPTLI
                     TDRPEKLERGIAAVRKAMRTNPSVLGIHLEGPFISAQRPGVHDPAAIRRPTDADLALL
                     TSLDTGVTLVTLAPEEVPAGFVAALSRAGVRVSLGHSMATYDETRAAMAEGLTGFTHL
                     FNAMRPLGSRDPGPIAAALETPACWYGLIVDGEHVDAAVLRLALRGLGRPMLVTDAMP
                     PVGGTRGRFSLYGQEIAVRDGRCVTSDGTLAGAALDMASAVRNAVRLLGIDLAGALHM
                     ASTAPADFLGLGERLGRVKAGARADLVALDPTTVHLLRTWVAGEASDPER"
     gene            complement(2588..>3504)
                     /locus_tag="VE686_00955"
     CDS             complement(2588..>3504)
                     /locus_tag="VE686_00955"
                     /EC_number="3.5.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018406894.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_function: GO:0097367 - carbohydrate derivative binding
                     [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="SIS domain-containing protein"
                     /protein_id="HYY83049.1"
                     /translation="RPPHVVVTCARGSSAHAATFGKHLIERTLGIPVAAAAPSVTTVY
                     RKALRLEGELFLAVSQSGASHDLVEQAEAARRAGAVTVALVNADDSMLARACDIVLPM
                     AAGPEHSVAATKTFVASLAALMRLAAAWSEDAAMTAALERLPERLALATDLDWSAALP
                     SLTEAVSLMTIGRGPTLAIAREASLKLKETCNLHAEAFSGAEVRHGPVTLVSTQYPIL
                     MFMPTDAAAAGLRRLADDFRTMKASLFVAEPGEPAPGRLPALAPEQPEADAICLIQSF
                     YGMAVQLSARRGLDADRPRHLKKVTRTR"
BASE COUNT          476 a         1206 c         1310 g          512 t
ORIGIN      
        1 tccgtgatgt agaggtaggc gcccgactcc tcgaaccctg agatctcgac ctcgctgagc
       61 tcgctcggca cgcccgagcc ggcgtggcgc tggtagaagc acttcttctg ccgcccggtc
      121 gggcagcgca cgagagtgat cggccggcgc gccacgtggg ggagcatcca gtcggcgacc
      181 gcgatggcgt actcggcgag atcgcgcttg gtgatgccct gctcggggta gagcaccttg
      241 tcggggcttg tcaggcgcac gccggcgagc tcgatttctt ccttcgcggc cactcaaccc
      301 tccagcatct tggcgacgag cctggccggg cgcgcctcct cctgcatctg ctcgaaggtg
      361 cactgccggg gcgccttgtc gggccgccag cgcacgagcc gcgtcccatg ccggaaccgg
      421 ccgccgctga cgtggtcgta gcgcacctcg acgacgagct ccggccgcag cggctgccat
      481 tcgccggtgc gctccgtcga ccagcggctt gggcctcccg gggcgtcgcc cgtgaagccc
      541 ggaggttcga tcagcgcctc gaggcgcttc gtcagcgcgg gcttctcgtc ggcgccgatg
      601 ttcgaggtga agccgacgtg gtcgagccgg ccctcctcgt catagaggcc gagcaggagc
      661 gagccgacca cgcgggagtt ggtgccgtag cgaaagccgc cgacgacgca gtcggcggtg
      721 cgcatgcgct tcaccttgag catggcccgc tcgccgctca cgtaggggcc gtcgaggcgc
      781 ttggcgatga cgccgtcaag cgctccgccg gccttggcga gccacctctg cgcttccttg
      841 cggtcgcgcg tgtagggcga gagcctgagc gagtcgcttt ggccggcgtt ggcgaagaac
      901 gcctcgaggg ccgcccggcg ctcgcccaaa agggcgtcga ggagcgcgcc cccgtccggt
      961 gtcacgagga tgtcgaacag gatcaggatg gccggtgtct cgtgcgcgag cttgcggatg
     1021 cggctctcgg ccggatgcag gcgcatctgc agggcgtcga acgagagggt gtcgcccgtc
     1081 ggaatggcga gctcgccgtc gagaacgaag cggtccggct tcaaggcgcg gacgaactcg
     1141 accacctcgg gaaagtagcg cgccagcggc ttgcccgatt tggcgcgcag atcgacttcg
     1201 tcgccgcccc ggaaggcgag gcagcgaaac ccgtcccatt tcggctcgaa ctgccagccc
     1261 gcgtcgtccg gcaggctatc gacgagcttc gcctccatgg gggaggtgtc gatgccgagg
     1321 ggaaggctgc tcagcccgcc ccccgtggcc cggtttgctc gcgccgtcgc catctgccac
     1381 cggttcctcc gcgttcaggg aggaaagtcg tttgaccggc cgattcgttc cccaggtcag
     1441 cgctccgggt cgctcgcctc gcctgccacc caggtccgca gcaggtgaac ggtcgtcggg
     1501 tcgagggcga cgaggtccgc ccgcgcgccg gctttcacgc gtccgagccg ctctccgagc
     1561 ccgaggaagt cggccggcgc ggtcgaggcc atgtggagcg cgccggcaag atcgatcccg
     1621 aggaggcgga ccgcgttgcg caccgcgctt gccatgtcga gggcggcgcc cgcgagggtc
     1681 ccgtccgatg tgacgcagcg cccatcgcgg acggcgatct cctggccgta gaggctgaat
     1741 cggccccgtg tcccgccgac gggcggcatg gcgtcggtca cgagcatggg ccggccgagg
     1801 ccgcgcaggg cgagccgcag cacggcggca tcgacgtgct cgccgtcgac gatgagacca
     1861 taccagcacg ccggcgtctc cagcgcggcc gcgatcgggc ccggatcgcg gctgcccaag
     1921 gggcgcatgg cgttgaacag atgcgtgaag cccgtgagcc cctccgccat ggcggcccgg
     1981 gtctcgtcgt aggtcgccat ggagtggccg agcgacacgc gcacgcccgc gcgcgacagc
     2041 gccgcgacga agccggcggg gacctcctcg ggggccagcg tcacgagcgt gacgccggtg
     2101 tcgaggctcg tcagaagcgc gagatcggca tcggtcggcc ggcggatcgc ggcaggatcg
     2161 tgcacgcccg ggcgctgggc tgagatgaac gggccttcga ggtggatgcc gagcacgctc
     2221 gggttcgtcc gcatcgcttt gcgcaccgcc gcgatgccgc gctccagctt ctcgggccgg
     2281 tccgtgatca gcgtcggcag gaggctcgtc gtgccgaagc gccggtgcgc cgccgccatg
     2341 gtcgcgatgc cctcggggtc gagggcgtcg ttgaagagca cgtcgccgcc gccgttgacc
     2401 tggacgtcga tgaagcccgg cgcgagccat gtgccgggag gcagctgctc gatgttggcc
     2461 ccggtcggca tctcggcctg cggaaccaag gcgacgatgg tatcccgggc gacgaggacg
     2521 gcagcctcgc cgtgaacggt atcgccgtcg aagatgcagt cggccgcgat ggcgtgcagc
     2581 gccggggtca tcgggtgcgc gtcaccttct tgaggtgccg gggccggtcg gcgtcgaggc
     2641 cgcggcgcgc cgagagctgc accgccatgc cgtagaagct ctggatcagg cagatcgcgt
     2701 cggcctcggg ctgctcgggc gcgagcgccg gcaggcgtcc tggggccggc tcgcccggct
     2761 cggccacgaa gagggacgcc ttcatggtgc ggaagtcgtc ggcgaggcgg cgcaggccgg
     2821 ccgcggcggc gtcggtcggc atgaacatga ggatcgggta ctgcgtcgag acgagcgtca
     2881 ccgggccgtg ccgcacctcg gcgccgctga aggcctcggc gtgcaggttg caggtttcct
     2941 tgagcttgag cgacgcctcg cgcgcgatgg cgagcgtcgg gccccggccg atggtcatca
     3001 ggctcaccgc ttcggtgagg ctcggcaggg cggcgctcca atcgaggtcg gtcgcgagcg
     3061 cgagccgctc gggcagccgc tcgagcgcgg ccgtcatcgc tgcgtcctcg ctccacgccg
     3121 ccgcgagccg catgagcgcc gcaagcgacg ccacgaaggt cttggttgcc gcgacgctgt
     3181 gctccggccc ggccgccatg ggaagcacga tgtcgcaagc gcgcgcgagc atgctgtcgt
     3241 cggcattgac gagagcgacc gtcaccgcgc cggcgcgccg cgccgcttcg gcctgctcga
     3301 cgagatcgtg gctcgctccc gattgcgaca ccgcgaggaa cagctcgccc tcgaggcgca
     3361 gcgccttgcg gtagacggtc gtcacgctcg gcgccgccgc ggcgaccgga atgccgagag
     3421 tgcgctcgat gaggtgcttg ccgaaggtcg cggcgtgggc cgagctgccg cgggcgcagg
     3481 tcacgaccac gtgaggcggg cggg
//
LOCUS       DASQWN010000050         2051 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1299736, whole genome shotgun sequence.
ACCESSION   DASQWN010000050 DASQWN010000000
VERSION     DASQWN010000050.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2051)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2051)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2051
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1299736"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..854
                     /locus_tag="VE686_00960"
     CDS             <1..854
                     /locus_tag="VE686_00960"
                     /EC_number="4.2.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014491284.1"
                     /note="cleaves the ring of
                     2,3-dihydro-2,3-dihydroxybenzoyl-CoA forming
                     6-hydroxy-3-hexenoyl-CoA; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="benzoyl-CoA-dihydrodiol lyase"
                     /protein_id="HYY83050.1"
                     /translation="ERIATITIRAPEGPAPETVDAMVAQGSGFWPLQVARELDDAILH
                     LRINELETAVLLFKTLGDGAGVLAHDAFLDANKDHWLANEIRHLWKRVLKRIDVTSRT
                     LVAIVEPGSCFVGTLAELVFAADRSYMLIGEKAGDNRGPATLVLNAANFGPYPMSHGL
                     TRLQSRFQADPEDVERARARSGEPIEGDDAERLGLVTFALDDIDWDDEVRLAVEERAS
                     LSPDALTGMEANLRFVGPETMESKIFARLTAWQNWIFQRPNAVGEEGALRRYGTGQKA
                     AFDMTRV"
     gene            860..>2051
                     /gene="boxB"
                     /locus_tag="VE686_00965"
     CDS             860..>2051
                     /gene="boxB"
                     /locus_tag="VE686_00965"
                     /EC_number="1.14.13.208"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002714210.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051213 - dioxygenase activity [Evidence
                     IEA];
                     GO_process: GO:0010128 - benzoate catabolic process via
                     CoA ligation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="benzoyl-CoA 2,3-epoxidase subunit BoxB"
                     /protein_id="HYY83051.1"
                     /translation="MDLQNVDYSTKIPNNVGLTSDRQVLKALEGWHPGYLDWWNDMGP
                     EGFQESLVYLRTAVSVDPKGWAKFDYVRMPEYRWGILLAPQEEGRKVNFGAHMGEPAW
                     QEVPGEYRAMLRRLIVIQGDTEPASVEQQRHLGKTAPSLYDMRNLFQVNVEEGRHLWA
                     MVYLLQKYFGRDGREEADDLLRRRSGDEDAPRMLGAFNEATPDWLSFFMFTFFTDRDG
                     KMQLESLAQSGFDPLSRTCRFMLTEEAHHMFVGETGVGRTLQRTCEAMVAAGIEDPYG
                     RDRVRALGVVDLPTIQKKMNLHFTLSLDLFGSEVSTNAANFYNSGLKGRFQETKIDDD
                     HRLTDATYPVSKLVDGKVTLVDEPALTALNMRLRDDYVVDCAKGVERWNKIIEKTGVK
                     FRLEL"
BASE COUNT          356 a          713 c          673 g          309 t
ORIGIN      
        1 ccgagcgcat cgccacgatc accatccgcg cacctgaagg gcctgcgccc gagaccgtcg
       61 acgccatggt ggcgcagggg tcagggttct ggccgcttca ggtcgcgcgc gagctcgacg
      121 acgccatcct gcacctgcgg atcaacgagc tcgagacggc ggtcctcctg ttcaagaccc
      181 tcggcgacgg cgcaggcgtg ctggcgcacg acgctttcct cgacgccaac aaggaccatt
      241 ggctcgccaa cgagatccgg cacctgtgga agcgcgtgct gaagcgcatc gacgtcacct
      301 cgcgcaccct cgtcgccatc gtcgagcccg gctcgtgctt cgtcggcacg ctggcggagc
      361 tcgtgttcgc cgccgaccgc tcgtacatgc tcatcggcga gaaggccggc gacaaccgcg
      421 gccccgcgac gctcgtgctg aacgccgcaa acttcggccc ctacccgatg agccacgggc
      481 tcacgcgcct gcaatcgcgt ttccaggccg atcccgagga cgtggagcgg gcccgcgccc
      541 ggagcggcga gccgatcgag ggcgatgacg ccgagcgcct cgggctcgtc accttcgcgc
      601 tcgacgacat cgactgggac gacgaggtgc ggctggccgt ggaggagcgc gcgagcctct
      661 cgcccgacgc gctcacgggc atggaggcga acctgcgctt cgtcggcccc gagaccatgg
      721 aatcgaagat cttcgcgcgc ctcaccgcct ggcagaactg gattttccag cgtccgaacg
      781 cggtcggcga ggaaggcgcg ctgcgccgct acggcaccgg ccagaaggcc gcgttcgaca
      841 tgacgagggt gtgagagaga tggacctcca gaacgtcgat tactcgacca agatccccaa
      901 caacgtcggg ctgacctccg accggcaggt gctgaaggcc ctcgagggct ggcacccagg
      961 ctatctcgac tggtggaacg acatggggcc ggaaggcttc caggagtccc tcgtgtacct
     1021 gcgcaccgcc gtctcggtcg acccgaaggg ctgggcgaag ttcgactacg tgcgcatgcc
     1081 cgagtaccgc tggggcattc tgctggcgcc ccaggaggaa gggcgcaagg tcaacttcgg
     1141 cgctcacatg ggcgagcccg cttggcagga ggtgcccggc gagtaccgcg ccatgctgcg
     1201 ccgcctcatc gtcatccagg gcgacaccga gccggcgtcc gtcgagcagc agcgccatct
     1261 cggcaagacg gcgccgtccc tctacgacat gcgcaacctg ttccaggtca acgtcgagga
     1321 aggccggcac ctctgggcca tggtctacct cctgcaaaag tattttggcc gcgacgggcg
     1381 cgaggaggcg gacgacctgc tgcgccgccg ctcgggcgac gaggacgcgc cgcgcatgct
     1441 cggtgccttc aacgaggcga cgcctgactg gctctcgttc ttcatgttca ccttcttcac
     1501 cgaccgtgac ggcaagatgc agctcgagag cctcgcgcaa tcgggcttcg atcccctgtc
     1561 gcgcacctgc cgcttcatgc tgacggaaga ggcgcaccac atgttcgtcg gcgagacggg
     1621 cgtcgggcgc accctccagc gcacctgcga ggccatggtg gccgccggca tcgaggatcc
     1681 ctacggccgc gaccgggtcc gggcgctcgg ggtcgtcgac ctgccgacca tccagaagaa
     1741 gatgaacctg cacttcaccc tgtcgctcga cctctttggc tcggaggtct cgacgaacgc
     1801 cgcgaacttc tacaactcgg gcctcaaggg ccgcttccag gagacgaaga tcgacgacga
     1861 ccaccggctc acggacgcga cctatccggt gtcgaagctc gtcgacggga aggtgacgct
     1921 cgtggacgaa ccggcgctga cggccctgaa catgcgcctg cgcgacgact acgtggttga
     1981 ctgcgccaag ggcgtcgagc gctggaacaa gatcatcgag aagactggcg tcaagttccg
     2041 cctcgagctg c
//
LOCUS       DASQWN010000051         2110 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_897837, whole genome shotgun sequence.
ACCESSION   DASQWN010000051 DASQWN010000000
VERSION     DASQWN010000051.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2110)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2110)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2110
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_897837"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..476)
                     /locus_tag="VE686_00970"
     CDS             complement(<1..476)
                     /locus_tag="VE686_00970"
                     /inference="COORDINATES: protein motif:HMM:NF013625.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042834 - peptidoglycan binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan-binding protein"
                     /protein_id="HYY83052.1"
                     /translation="MAVGCLLVFSAPAAAGPKVAAVQVALKRLGLYNATVDGVRGPVT
                     KHAIVSFQRRRGLSVDGVVGPQTRRAFGKRGRPAFGSRTMKRGDRGWDVAAMQYILAR
                     RGYPPGAIDAVFGPMTDTALRNFQRAYGLSSDGLAGPQTISALRRGRASRGTPGGTT"
     gene            612..1343
                     /locus_tag="VE686_00975"
     CDS             612..1343
                     /locus_tag="VE686_00975"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY83053.1"
                     /translation="MKPIRTTFMVVLVLAAGYAEAQARIPLKEAKLNIEHNATDRDTG
                     FQGFIDSEGWRRLDMRGPRGRVLTFRGRGALARLGLTELFFETVEPENKDTSVRKMLA
                     KLPEGRYRVAGAAQENGERLGRTSGRAWLTHDIPRGPRLISPAEGATVPADDVVADWA
                     PVSRTITGKPVRIIAYQLIIEKDAPPPRHMIGTFGLSMYVPRSVTRIEVPDGALQPRT
                     SYDWEVLAIERSGNQTLSSGSFKTG"
     gene            complement(1350..>2110)
                     /locus_tag="VE686_00980"
     CDS             complement(1350..>2110)
                     /locus_tag="VE686_00980"
                     /inference="COORDINATES: protein motif:HMM:NF012398.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="aldehyde dehydrogenase family protein"
                     /protein_id="HYY83054.1"
                     /translation="FTGSTEVGRSLIEASAKNVLKVSMELGGNAPFLIFEDGDLDAAV
                     EGALLAKMRNIGEACTSANRFHVAEPIREEFTKRLAEKMGSLKIGRGTDEDVKVGPLI
                     DQPSREKVMELVDDALSKGATKVVGGEIPDGRGYFVEPTVLGDVPEDARVFHEEIFGP
                     VAPVGGFESEEDAIARANDTEYGLVAYVFTRDIKRAIRVCEGLETGMVGLNQGMVSNA
                     GAPFGGTKQSGIGREGGKEGLEEFLETKYVAVNL"
BASE COUNT          326 a          780 c          688 g          316 t
ORIGIN      
        1 gtcgtgccac cgggcgttcc cctcgatgcc ctgccacggc gcagcgccga gatcgtctgg
       61 gggcccgcca ggccatcgga gctcagcccg taggcgcgct ggaagttcct gagcgccgtg
      121 tcggtcatcg gcccgaagac cgcgtcgatc gcgcccggcg gatacccgcg ccgggcgagg
      181 atgtactgca tggcggccac gtcccagccg cggtcgccgc gcttcatcgt ccggctgccg
      241 aaggccggcc ggccgcgctt gccgaacgcc cgccgcgtct gaggcccgac gaccccgtcg
      301 accgacaggc cgcgccggcg ctggaagctc acgatggcgt gcttcgtgac cggcccgcgg
      361 acgccgtcga ccgtcgcgtt atagagccct agtcgcttca gtgcgacctg gactgccgcg
      421 accttggggc ccgcggcggc tggggcggaa aagacgagca gacatccaac tgccaatgcg
      481 attccaccgg aaacgacccg gttggagggc acgcatccac cttcgaaaga tcacccggat
      541 cgcgcaaccg atgaaacgga tcctgcgagc tctcatccga gtctcatggg gacgccggag
      601 catgactgcg catgaagccg attcgaacca cgttcatggt cgtcctcgtc ctggcggcgg
      661 gttacgccga ggcgcaggcg cgcatcccgc tgaaggaggc caagctcaac atcgagcaca
      721 acgcgaccga ccgggacacc ggcttccagg gattcatcga cagcgagggc tggcggcgcc
      781 tcgacatgcg cggtccgcgc ggcagggtcc tcaccttcag gggccgcggc gcactcgccc
      841 ggctgggcct gaccgagttg ttcttcgaga ccgtcgagcc cgagaacaag gacacgtcgg
      901 tcaggaagat gctggccaag ctgccggagg gcaggtaccg ggtcgccggc gccgcgcagg
      961 agaacggcga gcgcctcggc cggacctcgg gaagggcctg gctcacgcat gacatcccgc
     1021 ggggcccgcg gctcatctcc cccgccgagg gcgcgaccgt gccggccgac gacgtcgtcg
     1081 ccgactgggc gcccgtgtca cggacgatca ccggcaagcc ggtgcggatc atcgcctacc
     1141 agctcatcat cgagaaggac gcgcccccgc cccgccacat gatcggcacg ttcgggctga
     1201 gcatgtacgt gccgcgctcg gtgacccgca tcgaggtgcc ggacggcgcc ctacagcccc
     1261 ggacctccta cgactgggag gtgctggcga tcgagcgcag cggcaaccag acgctctcct
     1321 cgggatcctt caagaccgga tagcgggctc tacaggttca cggccacgta cttcgtctcg
     1381 aggaactcct cgaggccctc cttgccgccc tcgcggccga tcccgctctg cttcgtccct
     1441 ccgaacgggg cgccggcgtt cgagaccatt ccctggttca ggccgaccat tccggtctcg
     1501 aggccctcgc agacgcggat cgcccgcttg atgtcgcggg tgaagacgta ggcgaccagg
     1561 ccgtactcgg tgtcgttggc ccgtgcgatc gcgtcctcct cggactcgaa gccgccgacc
     1621 ggcgccaccg gcccgaagat ctcctcgtgg aagacgcggg cgtcctcggg cacgtcgccc
     1681 aggacggtcg gctcgacgaa gtagccgcgg ccgtcgggga tctctccgcc gaccaccttc
     1741 gtcgctccct tcgacagcgc atcgtccacc agctccatca ccttctcgcg cgacggctgg
     1801 tcgatcagcg ggccgacctt cacgtcctcg tcggtcccgc gcccgatctt cagggagccc
     1861 atcttctcgg ccagccgctt cgtgaactcc tcgcggatcg gctccgccac gtggaagcgg
     1921 ttcgccgacg tgcacgcctc gccgatgttc cgcatcttcg ccagcagggc cccctcgacc
     1981 gcggcgtcga ggtcgccgtc ctcgaagatc aggaaaggcg cgttcccgcc cagctccatc
     2041 gacaccttga gcacgttctt cgcggaggcc tcgatcagcg agcggcccac ctcggtcgag
     2101 cccgtgaagg
//
LOCUS       DASQWN010000052         2210 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_203295, whole genome shotgun sequence.
ACCESSION   DASQWN010000052 DASQWN010000000
VERSION     DASQWN010000052.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2210)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2210)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2210
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_203295"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            134..1642
                     /locus_tag="VE686_00985"
     CDS             134..1642
                     /locus_tag="VE686_00985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018045925.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008253 - 5'-nucleotidase activity
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional UDP-sugar
                     hydrolase/5'-nucleotidase"
                     /protein_id="HYY83055.1"
                     /translation="MRSVPSLARAVLAAIALLAGVATAVAQQAKVTFVLTNDLYQMSE
                     EDGRGGMARLAAVVKAEKAKGGTVLFVHAGDAWSPCLLCSIDQGAHMVALLNEFPPDV
                     FVPGNHEFDFGKEVYAQRRAEAKFPFLAANLRDAQGQPLPGHQDRTMLDVNGVKIGIV
                     GIGLQATGNVSSSGDLQFLPEIETLRAQAKALRAQGADLVVAVTHTDRPVDFQIMEAR
                     IVDVLLTGHDHDLRVVYDGHTVMVESGEDAHYVTALDVDVTMKTEAGVRRADWRPSFR
                     IVNTANVTPDPAVAAKVKEYEDYLARVSSEPIGRTVSGLDTRSASVRSHETGFGNLVA
                     DALREVLKADVAIVNGGAIRGNRMYPAGTVLTPREIRTELPFSNKAVLIELRGSDLRA
                     ALENGFSTMGNPSGRFPQVSGLRLEVNADAPNGSRITAIEVNGEPLKDDRLYRVATVD
                     FLARGGDDYVAFTRGRTLSGDADGVLLAAAVIDHVRRRGTVGGNEPIRIVIR"
     gene            1639..>2210
                     /locus_tag="VE686_00990"
     CDS             1639..>2210
                     /locus_tag="VE686_00990"
                     /EC_number="3.2.2.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003597675.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004844 - uracil DNA N-glycosylase
                     activity [Evidence IEA];
                     GO_process: GO:0006284 - base-excision repair [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="uracil-DNA glycosylase"
                     /protein_id="HYY83056.1"
                     /translation="MTGPVAAALAAFRAEADPEGWPALPFFREGHADAVAALVDARIA
                     AGTQVLPAAEGVFRALALTPLDRVKVVILGQDPYPRPGDAHGLAFSFVGDGRMPPSLK
                     VVLGEMADDLGCERPARGDLTAWARQGVLLLNAALTVEAGASGAHMKLGWAALTDEVV
                     ATVSAKRPAAVFMLWGGPARARAALIDRTK"
BASE COUNT          317 a          816 c          762 g          315 t
ORIGIN      
        1 gccctacata gggcgcgcca tccctcctcg cgaggggcgg atccgcgtcc cgcgcggccg
       61 tgtcgtctgg acggggcccg aggcaattcg cataagggcc gatcctgccg atcccgccga
      121 ggagcctccg accttgcgtt ctgtcccgtc gctcgcccgt gcggtccttg cggccatcgc
      181 cttgctcgcc ggcgtcgcca cggcggtcgc gcagcaggcg aaggtcacct tcgtgctcac
      241 caacgacctc taccagatgt ccgaggagga cggccggggc ggcatggcac ggctcgcggc
      301 ggtggtgaag gccgagaagg cgaagggcgg cacggtgctg ttcgtccacg ccggcgacgc
      361 ctggtcgccg tgcctcctgt gcagcatcga ccagggcgcc cacatggtcg cgctcctgaa
      421 cgagttcccg cccgacgtgt tcgtgccagg gaaccacgag ttcgactttg gcaaggaggt
      481 ctatgcgcag cgccgcgccg aggcgaagtt cccgttcctc gccgcgaacc tgcgcgatgc
      541 gcaagggcag ccgctgcccg ggcaccagga ccggaccatg ctcgacgtca acggcgtcaa
      601 gatcggcatc gtcggcatcg gcctgcaggc aaccggcaac gtgtcgagct ccggcgatct
      661 ccagttcctg cccgagatcg agaccctgcg agcgcaggcg aaggccctgc gcgcgcaggg
      721 cgccgacctc gtcgtcgccg tcacccacac ggaccggccg gtggacttcc agatcatgga
      781 ggcccgcatc gtcgacgtgc tgctcacggg ccacgaccac gacctgcgcg tcgtctacga
      841 cggccacacc gtcatggttg aatcgggcga ggacgcccac tacgtgaccg cgctcgacgt
      901 cgacgtgacc atgaagacgg aggctggcgt gcggcgggcc gactggcgcc caagcttccg
      961 catcgtcaac accgccaacg tcacgcctga cccggctgtc gccgccaagg tgaaggagta
     1021 cgaggactat ctcgcccggg tgtcgagcga gccgatcgga cgcaccgtca gcggcctcga
     1081 cacgcgctcg gcctcggtgc gctcgcacga gacaggcttc ggcaacctcg tggccgacgc
     1141 gctgcgcgag gtgctcaagg ccgacgtggc gatcgtcaac ggcggcgcca tccgcggcaa
     1201 ccgcatgtac ccggcgggca cggtgctgac gccccgggag atccgcacgg agctgccgtt
     1261 ctccaacaag gccgtgctca tcgagctgcg cgggtcggac ctcagggccg cgctcgaaaa
     1321 cggcttctcg accatgggca acccgtcggg acgcttcccg caggtctctg gcctgcggct
     1381 cgaggtcaac gccgacgcgc cgaacggatc gcgcatcacg gcaatcgagg tgaacggcga
     1441 gcctctcaag gacgaccgcc tgtaccgggt cgcgacggtc gacttcctgg cccgcggcgg
     1501 cgacgactac gtggccttca cccgcggccg cacgctttcg ggcgacgccg acggcgtgct
     1561 cctcgcagct gccgtcatcg accacgtgcg ccgacgcggc accgtcggcg ggaatgagcc
     1621 catccgcatt gtgatccgat gacgggtccg gtcgcggcgg cgctcgcggc cttcagggcg
     1681 gaggcggacc cggagggctg gccggccctc cccttcttcc gcgagggcca cgccgacgcc
     1741 gtcgcggcgc tcgtcgacgc gcgcatcgct gcgggcacgc aggtgctgcc cgccgccgaa
     1801 ggcgtgttcc gggcgctcgc gctgacgccc ctcgaccgcg tgaaggtcgt gatccttggc
     1861 caggacccct atccgcggcc cggcgacgcg catgggctcg cgttctcctt cgtcggcgat
     1921 ggccgcatgc cgccgtccct caaggtcgtc ctcggcgaga tggccgacga cctcggctgc
     1981 gagcgccccg ctcggggcga cctcacggcc tgggcccgcc agggcgtcct tctcctcaac
     2041 gcggcgctga ccgtcgaggc aggcgcctcc ggcgcccaca tgaagctcgg atgggcggcg
     2101 ctgaccgacg aggtcgtggc gaccgtttcg gcgaagcggc ccgcggccgt gttcatgctc
     2161 tggggcgggc cggcgcgcgc ccgcgcggca ctcatcgatc gcaccaagca
//
LOCUS       DASQWN010000053         3866 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_704265, whole genome shotgun sequence.
ACCESSION   DASQWN010000053 DASQWN010000000
VERSION     DASQWN010000053.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 3866)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3866)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3866
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_704265"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..415
                     /locus_tag="VE686_00995"
     CDS             <1..415
                     /locus_tag="VE686_00995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011924074.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HYY83057.1"
                     /translation="FDVELDVIEWNTLFTNWRQGAKDPSARGSNAINVSFAAMDPFFA
                     MVRFTWTKAFPPVSNNWGYFGNDEFDKLIADARNTFDDKGRDAALAKLHARIVEEAPF
                     VWIAHDVGPRAMSPKVKGVVQPQSWFIDIATMSLD"
     gene            480..1433
                     /locus_tag="VE686_01000"
     CDS             480..1433
                     /locus_tag="VE686_01000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012332547.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HYY83058.1"
                     /translation="MLLTLLRRVVYTIPILFGVSLVCFALVHIAPGDPLSSVLPPDAS
                     ADLQRMLRTIYGFDRSYPEQFGLWLWRAVQGDLGTSIASGRPVTLEVMKAVANTLRLA
                     VVATAIGFFFGSLFGFVAGYFRDSLVDKAASALAVLGVSVPHYWLGMVLVIVFSSQLG
                     WLPATGAGPGGSDEWAWDWEHFSHMLLPALTMSVIPMGIVARTVRALVADILSQDFVT
                     GLRAKGLTEVGVFRHVVKNAAPTALAVMGLQLGYLLGGSILIETVFSWPGTGFLLNSA
                     IFQRDLPLLQGTILVLALFFVVLNLAVDVLQSALDPRVQRS"
     gene            1437..2330
                     /locus_tag="VE686_01005"
     CDS             1437..2330
                     /locus_tag="VE686_01005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020185666.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HYY83059.1"
                     /translation="MAVGAEAPALDPAIPATPVAGYWTSVWRRLRRDPVAIAAALVLI
                     AIVLMAIFAPYVAPADPYRSSMLRRLRPMGTPGFPLGSDELGRDMLTRLIYGARLSLF
                     MGVTPVVLAFGIGSAIGIFAGYLGGRINTLVMRTIDVFYAFPSVLLAVALSGALGAGL
                     GNAMLSLTIVFIPPIARVAEAVTTQMRSRDFVEAARASGAGALTIIRVHILGNVLGPI
                     FVYATSLISVSMILASGLSFLGLGTRPPDPEWGLMLNTLRTAIYVQPWVAALPGLMIF
                     ITSISFNMLSDGLRSAMDVKQ"
     gene            2342..3388
                     /locus_tag="VE686_01010"
     CDS             2342..3388
                     /locus_tag="VE686_01010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007688924.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009898 - cytoplasmic side of plasma
                     membrane [Evidence IEA];
                     GO_component: GO:0043190 - ATP-binding cassette (ABC)
                     transporter complex [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0015440 - ABC-type peptide transporter
                     activity [Evidence IEA];
                     GO_process: GO:0015833 - peptide transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="oligopeptide/dipeptide ABC transporter
                     ATP-binding protein"
                     /protein_id="HYY83060.1"
                     /translation="MPIVAEDRGGPAQPLLSIRGLTKTFSISGGMFGSGAAQLRAVDR
                     IDFDVLKGETLGVVGESGCGKSTTARVLMQLIAKDDGEILFDGERVGSSALKLKQYRR
                     QVQMVFQDSYSSLNPRLTIEASIAFGPQVHGVPRAQAVARARSLLARVGLEPGRFAER
                     YPHELSGGQRQRVNIARALALEPRLIILDEAVSALDKSVEAQVLNLLLDLKEEFGLTY
                     VFISHDLGVVRFVSDRVMVMYLGQVVEIGEADTLFERPLHPYTAALLSSMPSLDPDRR
                     TEKAPLAGDPPSPIHPPPGCRFHTRCAFAEPICAEREPALYDGGPLQRAACLMVPPGS
                     GHSRAPAPMEAAHG"
     gene            3381..>3866
                     /locus_tag="VE686_01015"
     CDS             3381..>3866
                     /locus_tag="VE686_01015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018260799.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HYY83061.1"
                     /translation="MVDPVMAPSSVSRAAEAAPASTEPLVRVRGLKVTFSTGRQRVRA
                     VDGVDLTLARGEVMALIGESGSGKSVTLRSLMRLNPERRTKVEGEITVAGEDVLALGR
                     RRLSQFRGGEVAMIFQEPLLALDPVYRLGDQITEAIRRHETIGRAEARARALALFERV
                     RI"
BASE COUNT          501 a         1451 c         1254 g          660 t
ORIGIN      
        1 cttcgacgtc gagctcgacg tgatcgagtg gaacacgctg ttcacgaact ggcgccaggg
       61 cgccaaggac ccgagcgcgc gcggctcgaa cgccatcaac gtgtcgttcg cggccatgga
      121 cccgttcttc gccatggtgc ggttcacgtg gacgaaggcg ttcccgccgg tctcgaacaa
      181 ctggggctac ttcggcaacg acgagttcga caagctcatc gccgacgcgc gcaacacctt
      241 cgacgacaag ggccgcgacg cggcgctcgc gaagctgcac gcgcgcatcg tcgaggaggc
      301 gccgttcgtg tggatcgcgc atgacgtcgg accgcgtgcc atgtcgccca aggtcaaggg
      361 cgtggtgcag ccccagagct ggttcatcga catcgccacg atgtcgctcg actaaggcgg
      421 gccggtcggc ggcggcccgg gcacttggcc ccgggccgcg cgccacctgc ggaaaaccaa
      481 tgctcctcac ccttcttcgg cgcgtcgtct acacgattcc gattctgttc ggcgtctcgc
      541 tcgtctgctt cgccctcgtc cacatcgcgc cgggcgatcc cttgagctcg gtgctgccgc
      601 ccgacgcctc cgccgacctg cagcgcatgc tgcgcaccat ctacggcttc gaccgctcct
      661 atccggagca gttcgggctg tggctgtggc gcgccgtgca gggggacctc ggcacctcga
      721 tcgcgagcgg ccgccccgtg accctcgagg tcatgaaggc ggttgccaac accctgcgcc
      781 tcgccgtggt cgcgaccgcg atcggcttct tcttcggctc gctgttcggc ttcgtcgccg
      841 gctacttccg cgacagcctc gtggacaaag ccgcctcggc gctcgcggtg ctcggcgtca
      901 gcgttccgca ttactggctc ggcatggtgc tggtcatcgt gttctcgtcg cagctcggct
      961 ggctgccggc caccggggcc gggcccggag gctccgacga gtgggcctgg gactgggagc
     1021 atttcagcca catgcttctt cccgccctca ccatgtcggt gatccccatg ggcatcgtcg
     1081 cgcgcaccgt gcgggcgctc gtcgcggaca tcttgagcca ggacttcgtc acgggactgc
     1141 gggccaaggg cctcaccgaa gtcggcgtgt tccggcacgt cgtcaagaac gcggcgccga
     1201 cggcgctcgc cgtcatgggc ctgcagctcg gataccttct gggcggctcg atcctgatcg
     1261 agacggtgtt ctcctggccc ggcaccggat tccttctgaa ctccgccatc ttccagcgcg
     1321 acctgccgct cctgcagggc acgatcctgg tgctggcgct gttcttcgtc gtgctcaatc
     1381 tcgccgtcga cgtgctgcag tcggcgctcg accctcgcgt ccagcggagc tgagccatgg
     1441 cggtcggagc cgaagcgcct gccctcgacc ccgccatccc ggcgacgccc gtcgccgggt
     1501 actggacgag cgtctggcgt cgcctgcggc gcgaccccgt cgccatcgcg gcggcgctcg
     1561 tcctcatcgc catcgtgctc atggcgatct tcgcgcccta cgtcgctccg gcggacccgt
     1621 accgctcgtc gatgctgcgg cgcctgcgtc cgatgggcac gccgggcttc ccgctcgggt
     1681 cggacgagct cgggcgcgac atgctcaccc gcctcatcta cggcgcgcgc ctgtcgctgt
     1741 tcatgggcgt caccccggtg gtgctcgcgt tcggcatcgg cagcgccatc ggcatcttcg
     1801 ccggctacct cggcggccgc atcaacaccc tcgtgatgcg caccatcgac gtgttctacg
     1861 ccttcccctc cgtgctcctc gccgtcgccc tctcgggcgc cctcggcgcc ggcttgggca
     1921 acgcgatgct gtcgctcacc atcgtgttca tcccgcccat cgcccgcgtc gccgaggcgg
     1981 tcacgacgca gatgcggtcg cgcgacttcg tcgaggcggc gcgcgcatcg ggcgccggcg
     2041 cgctcacgat catccgcgtg cacatcctcg gcaacgtgct cggaccgatc ttcgtctacg
     2101 cgacgagcct gatctcggtc tcgatgatcc tcgcctccgg cctgtcgttc ctcgggctcg
     2161 gaacccgccc gcccgatccc gaatgggggc tcatgctgaa tacgcttcgc accgccatct
     2221 acgtccagcc gtgggtcgcg gcgcttcccg gactcatgat cttcatcacc tcgatctcgt
     2281 tcaacatgct ctccgacggg ctgcgctcgg ccatggacgt gaaacagtga ccgcgaccgc
     2341 gatgcccatc gtcgccgagg atcgcggcgg ccccgcccag ccgttgctgt cgatccgcgg
     2401 cctgaccaag accttctcga tctcgggcgg catgttcggg agcggcgcgg cccagctgcg
     2461 cgccgtcgac cggatcgact tcgacgtcct gaagggcgag acgctcgggg tcgtcggcga
     2521 gtccggctgc ggcaagtcga cgaccgcgcg cgtcctcatg cagctcatcg cgaaggacga
     2581 cggagagatc ctgttcgacg gcgagcgcgt cggctcgagc gcgctgaagc tgaagcaata
     2641 ccgccgccag gtgcagatgg tgttccagga ctcgtactcg tccctgaatc cgcgcctgac
     2701 catcgaagcg tcgatcgcct tcgggccgca ggtgcacggc gtgccgcggg cgcaagccgt
     2761 cgcgcgcgcg cgcagccttc tcgcccgcgt cggcctcgag cccgggcgct tcgccgagcg
     2821 ctacccgcac gagctctcgg gagggcagcg ccagcgcgtc aacatcgccc gcgcactcgc
     2881 cctcgagccg cgcctgatca tcctcgacga ggcagtctcg gccctcgata agtcggtcga
     2941 ggcgcaggtg ctcaacctcc tcctcgacct gaaggaggaa ttcgggctca cctacgtgtt
     3001 catcagccac gatctcggcg tcgtccgctt cgtctccgac cgggtcatgg tcatgtacct
     3061 cggccaggtc gtcgagatcg gcgaggccga cacgctgttc gagcgccccc tgcaccccta
     3121 cacggcggcg ctcctgtcct cgatgccgtc gctcgatccg gaccggcgga cggaaaaggc
     3181 gccgctggcg ggcgatccgc cgagccccat ccacccgccg cccgggtgcc gcttccacac
     3241 ccgctgcgcc ttcgcggagc ctatctgcgc cgagcgcgag ccggcgctct acgacggcgg
     3301 gccgctgcaa cgggccgcct gcctcatggt gccgccgggg tccggccact cgcgcgcgcc
     3361 tgcgcccatg gaggcggccc atggttgacc ctgtcatggc tccatcgtcc gtctcgcgcg
     3421 cggcggaagc tgcgcccgcg agcaccgagc ctctggtgcg cgtgcgcggg ctgaaggtca
     3481 ccttttccac gggccgccag cgggtgcgcg ccgtcgacgg cgtcgacctg acgctcgccc
     3541 gcggcgaggt catggccctc atcggcgagt cgggctcggg caagagcgtc accctgcgct
     3601 cgctcatgcg gctcaacccc gagcggcgca ccaaggtcga gggagagatc acggtcgcgg
     3661 gcgaggacgt gctcgccctc ggtcgccgcc gcctgagcca gttccgcggc ggcgaggttg
     3721 cgatgatctt ccaggagccg ctgctcgcgc tggatcccgt ctaccgcctc ggcgaccaga
     3781 tcaccgaggc gatccgccgc cacgagacca tcggccgcgc ggaggcgcgc gcccgcgcgc
     3841 tcgccctgtt cgagcgcgtg cgcatc
//
LOCUS       DASQWN010000054         3771 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1002255, whole genome shotgun sequence.
ACCESSION   DASQWN010000054 DASQWN010000000
VERSION     DASQWN010000054.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 3771)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3771)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3771
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1002255"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            152..1072
                     /locus_tag="VE686_01020"
     CDS             152..1072
                     /locus_tag="VE686_01020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009764219.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0015803 - branched-chain amino acid
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid ABC transporter
                     permease"
                     /protein_id="HYY83062.1"
                     /translation="MSLTLLLLQVLNGAQFGLIMFLIAAGLTLVFGVMDFINLAHGVQ
                     YMVGAYLAAALVAWTGSFWGGLALAMPAALAFGLLLEVLVFRHLYDRDHLDQVLATFG
                     VIIFLNQGVKLVWGAAPLSVPMPDALSGSIELADGLLYPVYRLAIIAAGLLVGVMLYG
                     LVSHTRVGMLVRAGATNAAMVSALGVNIRRLFMLVFAVGAMLAGFAGAMVAPILSVEP
                     GMGDNILILAFVVIVIGGIGSIRGAFLAALLIGIVDTVGRFLAPSLLRAVLDPSMASQ
                     TGRALAPMLIYILMAAVLFFRPSGLFPVRR"
     gene            1076..2062
                     /locus_tag="VE686_01025"
     CDS             1076..2062
                     /locus_tag="VE686_01025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009764218.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0015803 - branched-chain amino acid
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid ABC transporter
                     permease"
                     /protein_id="HYY83063.1"
                     /translation="MAELFPARSAHPAPRLRALRGHVVPLALLAALALAPLAAKLGPE
                     GYILSLLTRVMIFAIAAVSLDLILGYGGLISFGHAGFVGLGAYAVAIPMSHGSTELFV
                     HLATAMAGCAVFALVTGAISLRTKGVYFIMITLAFGQMLFFLATSLAPYGGDDGLTLP
                     SKSVVFGARVFRGEGAFYYVVLAVLAGVYLLCRAIVASRFGRVLRGTRENAVRMAAIG
                     FDPFRYQLVAYVIAAMIAGVAGVLLANQAEFVSPAYMTWQRSGELIFMVILGGLGSLH
                     GAILGAAAFLLLEEVLAGFTEHWKLIFGPLLVVIAIMGRGGLSGLLWRRSDA"
     gene            2055..2807
                     /locus_tag="VE686_01030"
     CDS             2055..2807
                     /locus_tag="VE686_01030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008596566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HYY83064.1"
                     /translation="MPEPALALERLRKAYGALVVTEDVDLAVAPGELHAIIGPNGAGK
                     TSLIHQISGVIPADSGRILLHGRDVTDAPAHERARAGLARTFQITSILPGFSALENVA
                     LAVQARSGSSFRFFGDASAEASLNEPALASLALVGLDDRAHVPARRLAHGEKRQLEIA
                     IALATEPKLLLLDEPLAGTGHEEGARLIATLKRLKGRYTIVLVEHDMEAVFALADRIT
                     VLVYGRVIATGTPEAVRSNPEVRSAYLGEEAA"
     gene            2815..3513
                     /locus_tag="VE686_01035"
     CDS             2815..3513
                     /locus_tag="VE686_01035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012093337.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HYY83065.1"
                     /translation="MLTVSHLQSAYGDSQVLFDVSFTVGSGEVVTLLGRNGMGKTTTV
                     SSVMGLVRPRGGEVAFEGRRVDGLAPYRIAQCGIGLVPEGRQVFPTLTVDENLVATAA
                     VRNPPARWTRERVHELFPRLADRRGHLGSQLSGGEQQMLAIGRALMTNPKLLILDEAT
                     EGLAPLIRAEIWACLERLKGEGQAILVIDKNVDALARLADRHVILEKGRVAWTGTSDE
                     LRADPSLKDRFLHV"
     gene            3581..>3771
                     /locus_tag="VE686_01040"
     CDS             3581..>3771
                     /locus_tag="VE686_01040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008135171.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupin domain-containing protein"
                     /protein_id="HYY83066.1"
                     /translation="MKSETAGITRANEGLDGIVWNILGQTYVPKHRTEHSFSWHATFP
                     PDTFVPPHIHPTQDEYLYIL"
BASE COUNT          469 a         1415 c         1215 g          672 t
ORIGIN      
        1 gcgagctatg agcgcctcgt cggcatcttc cgcttttccc ggcatcttcc cggattggtc
       61 gccgcgtgcg tcgagggttt tccggcatct tcccggcatc ttccgctttt tttggacgcg
      121 atctcctcga cggcgcggta ggtagcgcgg catgtcgctg accctcctcc tgctccaggt
      181 gctgaacggg gcgcagttcg ggctgatcat gttcctgatc gccgccgggc tgaccctggt
      241 gttcggcgtg atggacttca tcaacctcgc gcacggcgtg cagtacatgg tcggcgccta
      301 tctcgcggcg gcgctcgtcg cctggaccgg gagcttctgg ggcgggctgg cgctcgccat
      361 gccggcggcg ctggcgttcg ggctcctcct cgaggttctg gtgtttcgcc acctctacga
      421 ccgcgaccac ctcgaccagg tgctcgccac cttcggggtc atcatcttcc tcaaccaggg
      481 cgtgaagctc gtctggggcg ccgcgccgtt gagcgtgcca atgccggacg ccctgtcggg
      541 gtcgatcgag ctcgcggacg ggctcctgta cccggtgtac cggctcgcca tcatcgcggc
      601 cgggctcctc gtcggcgtga tgctctatgg gctcgtgagc cacacccgcg tcggcatgct
      661 ggtgcgcgcc ggggcgacga acgccgccat ggtctcggcc ctcggcgtca acatccggcg
      721 cctgttcatg ctcgtcttcg ccgtcggcgc catgctggcg ggcttcgccg gcgccatggt
      781 ggcgccgatc ctctcggtcg agcccggcat gggcgacaac atcctcatcc tcgccttcgt
      841 cgtcatcgtc atcggcggca tcggctccat ccgcggcgcc ttcctcgcgg cgctgctcat
      901 cggcatcgtc gacaccgtcg ggcgcttcct ggcgccctcc ctcctgcgcg ccgtgctcga
      961 cccgtccatg gcgagccaga ccggccgggc actcgcgccc atgctgatct acatcctcat
     1021 ggcggcggtg ctgttcttcc gcccctcggg gctgttcccg gtgcggcgct agggtatggc
     1081 cgagctcttt ccggcgcgga gcgcccatcc ggcgccgcgg cttcgcgcgc tccgcgggca
     1141 cgtggtgccg ctggcgctgc tggccgccct tgcgcttgct cccctcgccg cgaagctcgg
     1201 accggaaggc tacattctgt cccttctcac aagggtcatg atcttcgcca tcgcggccgt
     1261 atccctcgac ctcatcctcg gctacggcgg cctcatctcc ttcggccacg ccggtttcgt
     1321 cgggctcggc gcctatgcgg tggcgatccc catgagccat ggctcgacgg agcttttcgt
     1381 ccacctcgcg acagccatgg cgggatgtgc ggtgttcgcg ctcgtcaccg gcgcgatctc
     1441 gctgcggacg aagggcgtgt acttcatcat gatcacgctg gcgttcgggc agatgctgtt
     1501 cttcctcgcc acatcgcttg cgccttatgg gggtgacgac ggcctcacgc tgccctcgaa
     1561 gagcgtcgtc ttcggcgcgc gcgtgttccg cggcgagggt gcgttctatt atgtcgtgct
     1621 cgccgtgctc gccggcgtgt acctcctgtg ccgggcgatc gtcgcgtcgc gcttcgggcg
     1681 ggtgctgcgg ggtacgcgcg agaacgcggt gcgcatggcg gcgatcggct tcgacccctt
     1741 ccgctatcag ctcgtcgcat acgtcatcgc cgccatgatc gccggcgtcg ccggggtgct
     1801 gctcgccaac caggccgagt tcgtctcgcc cgcctacatg acatggcagc gctcgggtga
     1861 gctcatcttc atggtcatcc tcggcggcct tggcagcctg cacggggcga tcctcggcgc
     1921 ggcggcgttc ctgctcctcg aggaggtcct cgccggcttc accgagcact ggaagctgat
     1981 cttcggcccc ctcctggtcg taatcgcgat catgggacgc ggcggcctct cgggcctcct
     2041 ctggcgccgc agcgatgcct gagccggccc tggccctcga gcggctgcgc aaggcctacg
     2101 gcgccctcgt cgtcaccgag gacgtcgacc tcgccgtcgc acccggcgag ctgcacgcca
     2161 tcatcggccc gaacggggcc ggcaagacga gcctcatcca ccagatctcc ggcgtcatcc
     2221 cggccgactc cggccgcatc ctcctgcacg gacgcgacgt gacggacgcg ccggcgcacg
     2281 agcgggcccg cgccggcctc gcccgcacgt tccagatcac ctcgatcctg ccgggcttct
     2341 cggccctcga gaacgtcgcg ctcgccgtgc aggcgcgctc gggctcgagc ttccgctttt
     2401 tcggcgacgc ctcggccgag gcctcgctca acgagccggc gcttgcctcc ctcgcgctgg
     2461 tcggcctcga cgatcgcgcc cacgtgcccg cccgccgcct cgcccacggc gagaagcgcc
     2521 agctcgagat cgccatcgcg ctcgccacgg agccgaagct cctgctcctc gacgagccgc
     2581 ttgccggcac cggccacgag gagggcgcgc gcctcatcgc caccctgaaa cgcctgaaag
     2641 gccgctacac catcgtgctc gtcgagcatg acatggaggc ggtcttcgcg ctcgccgacc
     2701 gcatcaccgt cctcgtctac ggccgggtga tcgccaccgg cacgccggag gcggtgcgct
     2761 cgaaccccga ggtccgctcc gcctacctcg gcgaggaagc ggcgtgaggc gcgcatgctg
     2821 accgtctcgc acctgcagag cgcgtacggc gacagccagg tgctcttcga cgtgtccttc
     2881 acggtgggct cgggcgaggt ggttacgctg ctcggccgca acggcatggg caagacgacg
     2941 accgtcagct ccgtcatggg cctcgtgcgc ccccgcggtg gcgaggtcgc cttcgagggg
     3001 cgccgcgtcg acggcctggc cccgtaccgc atcgcccaat gcggcatcgg cctcgttccg
     3061 gaggggcggc aggtgttccc gaccctcacg gtcgacgaga acctcgtcgc gacggccgcc
     3121 gtccgcaacc cgccggcgcg ctggacccgg gagcgcgtcc acgagctctt cccgcgcctc
     3181 gcggaccggc gcggccacct cgggtcgcag ctctcggggg gcgagcagca gatgctcgcc
     3241 atcggacgcg ccctgatgac gaacccgaag ctcctcatcc tcgacgaggc gaccgagggc
     3301 cttgcgcccc tcatccgggc cgagatctgg gcctgcctcg agcggctcaa gggcgagggc
     3361 caggccatcc tcgtcatcga caagaacgtc gatgccctgg cccgtctcgc cgaccgccac
     3421 gtcatcctcg agaagggccg cgtcgcctgg acgggcacga gcgacgagct ccgcgccgac
     3481 ccgtccttga aggaccgctt cctgcacgtg tgagcaagtt ccaaccctcg acgttttgtg
     3541 cttcgatccc ccggaaacgc tgcaccaagg gggagcatcc atgaagagcg agaccgccgg
     3601 catcacgcgg gcgaacgagg ggctcgacgg catcgtttgg aacatcctcg gccagaccta
     3661 cgtgccgaag caccggaccg agcattcctt ctcgtggcac gcgacgttcc cgcccgacac
     3721 cttcgtcccg ccgcacatcc acccgacgca ggacgagtac ctctacatcc t
//
LOCUS       DASQWN010000055         3377 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_704676, whole genome shotgun sequence.
ACCESSION   DASQWN010000055 DASQWN010000000
VERSION     DASQWN010000055.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 3377)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3377)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3377
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_704676"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..127
                     /locus_tag="VE686_01045"
     CDS             <1..127
                     /locus_tag="VE686_01045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011580062.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004637 - phosphoribosylamine-glycine
                     ligase activity [Evidence IEA];
                     GO_process: GO:0009113 - purine nucleobase biosynthetic
                     process [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="phosphoribosylglycinamide synthetase C
                     domain-containing protein"
                     /protein_id="HYY83067.1"
                     /translation="ALGSTVAEAQERAYAAVNRIDWPEGFCRRDIGWRAVGRESR"
     gene            178..267
                     /locus_tag="VE686_01050"
     CDS             178..267
                     /locus_tag="VE686_01050"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system VapB family
                     antitoxin"
                     /protein_id="HYY83068.1"
                     /translation="MMAILIKDEEADRIVRELAARTGESLTDQ"
     gene            313..480
                     /locus_tag="VE686_01055"
                     /pseudo
     CDS             313..480
                     /locus_tag="VE686_01055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012760599.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system VapC family
                     toxin"
     gene            500..1414
                     /locus_tag="VE686_01060"
     CDS             500..1414
                     /locus_tag="VE686_01060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019401301.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HYY83069.1"
                     /translation="MPDDLFPGFASHWLDTQAGRIFARVGGSGPPVVLLHGFPQTHVA
                     FHRIAPALAQTNTVVCMDLRGYGWSSAPRADAGHGTYSKRAMGADVITVMEQLGHVRF
                     AVVGHDRGARVGYRLALDHPGRVARLALLDILPTAEVWRRIEAGAMPRAHWGFLAQPE
                     PQPEDEIGKDPLGYFHGLLTKWSGRGLDVFAPRALAAYDQSCNEPNRIHAFCEDYRAG
                     ATVDRAQDEADLAGLKRIACPVLLVWAEFYLTAGGKTADNETPLDVWRRTFAPHATGT
                     HLATGHFVAEEDPEGTLAALTPFLGETS"
     gene            1411..2493
                     /locus_tag="VE686_01065"
     CDS             1411..2493
                     /locus_tag="VE686_01065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011995532.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphotransferase family protein"
                     /protein_id="HYY83070.1"
                     /translation="MTIADRQAAYSGTKEVPENLAFDDARLAQWLAPRIPGFSGPLGV
                     RQFKGGQSNPTYLLTTPTRRYVLRRKPPGKLLASAHAVDREFRVLSALHKQGFPVAEP
                     LAYCEDDAVIGTAFYVMAHADGRVLWVPSLPESNPIERAAIYDAMNETIARLHAFDPG
                     DIGLSDFGRPEGYVARQVKRWSEQYRSSETQDIPEMNRVMAWLPEHVPPTSRPALVHG
                     DFRLDNLILHKSEPKVMAVIDWELATIGDPNADFVYHCMTWIMPAEKGGGTGSLVNQD
                     LAALGIPALDDYIAAYAKRMNLTEIPHLETLFAYNFFRLAAILQGIVGRVRDGTASNE
                     NAAAMANEVRPLAAAAWSWAQKAGAS"
     gene            complement(2506..>3377)
                     /locus_tag="VE686_01070"
     CDS             complement(2506..>3377)
                     /locus_tag="VE686_01070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018315994.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HYY83071.1"
                     /translation="FLLRLAPGDPAAIIAGEDATAESIASVRAKLGLDRPVIEQFAVW
                     VYGLMQGDLGVSIFSNLPVTRLIAQRLEPTLALTVSTLIVAVCLAVPMGVLAAWKAHR
                     AADRLVMVFAVLGFAMPTFLVGYGLIFIFSVKLGWLPVQGYRPIAQGFWPFLETLILP
                     SVALGIAYMALIARITRASMLEVLSEDYIRTANSKGLTTGRVLMLHALKNASVPIVTV
                     IGIGVALLISGVVITETVFNIPGLGRLTVDAVLKRDYPIVQGLILVFAGVKVLVNLIV
                     DLSYAALDPRIRY"
BASE COUNT          570 a         1159 c         1149 g          499 t
ORIGIN      
        1 ggcgctcggt agcacggtcg ccgaggcgca ggagcgagcg tacgcagcgg tgaataggat
       61 cgactggccg gaaggcttct gccgccgcga cataggctgg cgcgcggtcg gccgggagag
      121 caggtgaccg ttcggcaatc agatatatac tcgcctcgca atgtatatac gagccgcgtg
      181 atggcgatcc tgatcaagga cgaagaggcc gaccggatcg tccgggaact tgccgctcgc
      241 accggcgagt cgctcacgga ccagtgaaga acgccgcgaa gctgcggctt gcacgtcgac
      301 gccttccagc gggagcttgc ggtcgatgca ctccttgctt tcggcaaagg gcggcacccc
      361 gccgggttga acttcggcga ttgcttcacc tacgcgctgg ccaaggcgcg cggcgacacg
      421 ctgctgttca agggtgacga cttcgccagg acggatatca tgccggcctg gcggccctga
      481 gccgctgtcc acggtggcca tgcccgacga tctctttcca ggctttgcct cgcattggct
      541 cgacacgcag gccgggcgca tcttcgcgcg ggtcggcggg agcggccctc ccgtcgtgct
      601 gctgcacggc ttcccgcaga cgcatgtcgc gttccaccgc atcgcgccgg cgctcgccca
      661 gacgaacacg gtcgtctgca tggacctgcg cgggtacggc tggtcctccg cgccgcgcgc
      721 cgacgccggc cacgggacct attccaagcg ggccatgggc gccgacgtga tcaccgtgat
      781 ggaacaactc ggccacgtgc gcttcgctgt cgtcgggcac gaccgcgggg cgcgcgtggg
      841 ctaccggctc gccctcgacc acccgggccg tgtcgcgcgg cttgcgcttc tcgacatact
      901 cccgaccgcg gaggtctggc ggcgcatcga ggctggcgcc atgccgcggg cgcactgggg
      961 cttcctggct cagcccgagc cgcagcccga ggacgagatc ggcaaggatc cgctcggcta
     1021 cttccacggc cttctgacga agtggagcgg gcgcggtctc gacgtcttcg ccccccgcgc
     1081 gctcgccgcg tacgaccaga gctgcaacga gccgaaccgc atccacgcct tctgcgagga
     1141 ctatcgcgcc ggcgcgacgg tcgaccgcgc gcaggacgag gccgacctcg cggggctcaa
     1201 gcgcatcgcc tgtccggtgc tgctcgtctg ggccgagttc tacctgacgg ccggcggcaa
     1261 gaccgcggac aacgagacgc cgctcgacgt ctggcgccgg accttcgccc cgcacgcgac
     1321 gggaacgcac ctcgccaccg gccatttcgt ggcggaggag gacccggagg ggaccttggc
     1381 cgccctcacg cccttccttg gagagacgtc gtgaccatcg ccgaccgcca agccgcctat
     1441 tcagggacca aggaggttcc tgagaacctc gcgttcgacg acgcgcgtct cgcgcaatgg
     1501 ctcgcgccgc gcattccggg tttttcgggg cccctcgggg tgcgtcagtt caagggtggg
     1561 cagtcgaacc cgacgtatct gctcaccacg ccgacgcggc gctacgtcct gcgccgcaag
     1621 ccgcccggca agctcctcgc atccgcgcac gcggtcgacc gcgagttccg ggtgctctcc
     1681 gctctgcaca agcagggctt cccggtcgcc gaacccctcg cctattgcga ggacgacgcg
     1741 gtcatcggca ccgccttcta cgtcatggcc catgccgacg ggcgggtgct ctgggtcccg
     1801 agcctcccgg agtccaaccc aatcgagcgg gcggcgatct acgacgccat gaacgagacg
     1861 atcgcgcgcc tgcacgcctt cgacccgggc gacatcggcc tgtcggattt cggccgtccg
     1921 gagggctacg tcgcgcgcca ggtgaagcgc tggtcggagc agtaccgctc gagcgagacg
     1981 caggacatcc cggagatgaa ccgggtcatg gcgtggctgc ccgagcacgt gcctccgacg
     2041 tcgcggccgg cgctggtgca cggtgacttc cggctcgaca acctgatcct gcacaagagc
     2101 gagccgaagg tcatggcggt gatcgattgg gagctcgcaa cgatcggcga tcccaatgcg
     2161 gatttcgtct accactgcat gacgtggatc atgccggccg agaagggcgg cgggaccggg
     2221 agcctcgtca accaggacct cgccgcgctc ggcattccgg ccctcgacga ctacatcgcg
     2281 gcttacgcca agcgtatgaa cctcaccgag atcccgcatc tcgagacgct gttcgcctac
     2341 aatttcttcc gtctcgcggc gatcctgcag ggcatcgtcg gacgggtgcg ggacggcacg
     2401 gcgtcgaacg agaacgccgc cgcgatggca aacgaggtgc gcccactcgc ggccgccgcc
     2461 tggagctggg cgcagaaggc cggggcgtct tgacgcgagc ggacctcagt acctgatgcg
     2521 gggatcgagg gccgcgtagg acaaatcgac gatcaggttc accaggacct tcactcccgc
     2581 gaacaccagg atgagcccct gcacgatcgg gtagtcgcgc ttcagcaccg catcgacggt
     2641 caagcgcccg aggccaggga tgttgaacac cgtctcggtg atcacgacgc ccgagatcag
     2701 aagcgcgacg ccgatgccga tgacggtcac gatgggaacc gaggcgtttt tcagggcgtg
     2761 cagcatcagc acgcgcccgg tggtcaggcc cttcgaattg gcggtccgga tgtagtcctc
     2821 cgacagcacc tcgagcatcg acgcgcgggt gatgcgcgcg atgagggcca tgtaggcgat
     2881 gccgagcgcc accgagggca ggatcagggt ctcgaggaag ggccagaagc cctgcgcgat
     2941 gggccggtag ccctgcaccg gcagccagcc gagcttgacc gagaagatga agatgaggcc
     3001 gtagccgacg aggaacgtcg gcatggcgaa gccgagcacg gcgaagacca tcaccaaccg
     3061 gtcggcggcc cggtgcgcct tccaggccgc aaggaccccc atcggcactg caaggcatac
     3121 ggcgacgatg agcgtcgaca ccgtgagggc cagcgtcggc tcgaggcgct gcgcaatcag
     3181 ccgcgtcacg ggcaggttcg agaagatcga caccccgaga tcgccttgca tcaggccgta
     3241 gacccagacc gcgaactgct cgatgaccgg ccggtcgagg ccgagttttg cgcgcaccga
     3301 ggcgatcgac tcggccgtgg cgtcctcgcc ggcgatgatc gcggccggat cgcccggcgc
     3361 gaggcgcagg aggaaga
//
LOCUS       DASQWN010000056         2179 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1102143, whole genome shotgun sequence.
ACCESSION   DASQWN010000056 DASQWN010000000
VERSION     DASQWN010000056.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2179)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2179)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2179
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1102143"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..512)
                     /gene="obgE"
                     /locus_tag="VE686_01075"
                     /gene_synonym="cgtA"
                     /gene_synonym="obg"
                     /gene_synonym="yhbZ"
     CDS             complement(<1..512)
                     /gene="obgE"
                     /locus_tag="VE686_01075"
                     /gene_synonym="cgtA"
                     /gene_synonym="obg"
                     /gene_synonym="yhbZ"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012333953.1"
                     /note="ObgE; essential GTPase; exhibits high exchange rate
                     for GTP/GDP; associates with 50S ribosomal subunit;
                     involved in regulation of chromosomal replication; Derived
                     by automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase ObgE"
                     /protein_id="HYY83072.1"
                     /translation="MKFLDQAKIYIRSGDGGAGAVSFRREKFIEFGGPDGGDGGRGGD
                     VWVECVEGLNTLIDYRYQQHFKAKKGMHGMGRNRAGGKGDDVVLKVPIGTQVLAEDGE
                     TLLADMTEVGQRALLARGGNGGFGNLHFTTSTNRAPRHANPGQDGEEKTIWLRLKLIA
                     DAGLVGLPNAG"
     gene            complement(598..1242)
                     /locus_tag="VE686_01080"
     CDS             complement(598..1242)
                     /locus_tag="VE686_01080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009763276.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HYY83073.1"
                     /translation="MFPDLTRDDVFRLETRRLWLRWPRLADVPAIVRLAGEKAVAEMT
                     ARIPHPYSPEDAERFVFQARQANADGTGLQLAVTPKGRPGSLIGMVGIGPHPETGEPH
                     LGYWIGTPHWGEGYATEAARALIDAFFSYTDEAELTCAARVINPGSRRVIEKCGFAYL
                     GSGLMEFQARGGLFPVDHFRLDRRAWESLKTWRQTGYVRETAPFDLGLELAAAK"
     gene            complement(1411..1692)
                     /gene="rpmA"
                     /locus_tag="VE686_01085"
     CDS             complement(1411..1692)
                     /gene="rpmA"
                     /locus_tag="VE686_01085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012333951.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L27"
                     /protein_id="HYY83074.1"
                     /translation="MAHKKAGGSSRNGRDSAGRRLGVKKFGDEQVLAGNIIVRQRGTK
                     WHPGANVGIGKDHTLFATADGRVRFLTRAGRAFVSVIPAQDYPAQEAAE"
     gene            complement(1810..2130)
                     /gene="rplU"
                     /locus_tag="VE686_01090"
     CDS             complement(1810..2130)
                     /gene="rplU"
                     /locus_tag="VE686_01090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010683509.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000311 - plastid large ribosomal subunit
                     [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L21"
                     /protein_id="HYY83075.1"
                     /translation="MFAVIKTGGKQYRVAAEDTITIAKLAGEPGEAVTFDQVLMLSND
                     NGVEVGAPVVSGVSVAGTVVAQTRGEKVIAFKKRRRQNSRRKRGHRQDYTVVRITEIR
                     AGGR"
BASE COUNT          301 a          760 c          754 g          364 t
ORIGIN      
        1 ccggcgttcg gcagtccgac aagccccgca tcggcgatca gcttgaggcg aagccagatg
       61 gtcttctcct cgccgtcctg cccgggattg gcgtggcgcg gcgcgcgatt ggtcgaggtc
      121 gtgaaatgca ggttgccgaa accgccgttg ccgccgcgcg caagcagcgc gcgctgcccg
      181 acttcggtca tgtcggccag gagcgtctcg ccgtcctcgg ccagcacctg cgtcccgatg
      241 ggcaccttga ggacgacgtc gtcgcccttg ccgccggcgc ggttgcggcc catgccgtgc
      301 atgcccttct tggccttgaa atgctgctgg tagcgatagt cgatgagcgt gttgagcccc
      361 tcgacgcact cgacccagac gtcgccgccg cggccgccgt cgccgccgtc cgggccgccg
      421 aactcgatga acttctcgcg ccggaacgac acggcgcccg cgccgccgtc gccggagcgg
      481 atgtagatct tggcctggtc gaggaacttc atcgcccgct tcctttaagg gacaggacac
      541 acgggggcaa cgcgacgccg gagggaacgc tcccggccgg agccgggagc gtccgggcta
      601 cttcgcggcg gcgagttcga ggccgaggtc gaacggcgcc gtctcgcgga catagccggt
      661 ctgccgccag gtcttcaggc tctcccaggc gcggcggtcg agccggaaat ggtcgaccgg
      721 gaagagcccg ccccgcgcct ggaactccat caggccggag cccagatacg cgaagccgca
      781 cttctcgatg acccgccggg accccgggtt gatgacccgg gccgcgcagg tgagctccgc
      841 ctcgtccgtg taggagaaga aggcgtcgat cagcgcgcgg gccgcctcgg tggcgtagcc
      901 ctcgccccaa tgcggcgtgc cgatccagta gccgagatgg ggctctccgg tctccggatg
      961 cggcccgatc ccgaccatgc cgatgagcga gccggggcgc cccttcgggg tgacggcgag
     1021 ctgcaggccg gtcccgtcgg cgttcgcctg ccgggcctgg aagacgaacc gttccgcatc
     1081 ctcgggcgaa tagggatgcg ggatgcgggc cgtcatctcc gcgaccgctt tctcgccggc
     1141 gaggcgcacg atggcgggca cgtcggcgag ccgcggccag cgcagccaca gccggcgcgt
     1201 ctcgagccgg aacacgtcgt cacgggtgag gtcgggaaac atcgtcctgc tccgatccat
     1261 ggggtccgtt cgaccccgaa acgacgaagg ggaggtggca tcccacctcc cctgctgtct
     1321 ggatctgagc ttggccttaa gagcctggag cctctgaccc gccggttcgg tgcgatgccg
     1381 gcgggagctc cttcgtttcg ctctcgccgt ttactctgcg gcctcttggg ccggataatc
     1441 ctgggccgga atgaccgata cgaaggctcg gccggcccgc gtgaggaatc ggacgcgccc
     1501 gtcggcggtg gcaaagaggg tatgatcctt gcctatgccg acattcgcgc ccggatgcca
     1561 tttggtgccg cgctgacgca cgatgatgtt gccggcgagg acctgctcat cgccgaactt
     1621 cttgacgccg agacgacggc ctgccgaatc gcgcccgttg cgcgacgagc cgcccgcttt
     1681 cttgtgagcc atgggttact cccctgttcc tggtcccggg ccggccgcct catcgcgtgg
     1741 gaggcggtcc cggccggggg cggcccggag gccgcctgtc gtgatggtta ccgctgggcc
     1801 tcgcgggttc taccggccac cggcgcggat ctcggtgatc cgcaccacgg tgtagtcctg
     1861 gcgatgcccg cgcttgcggc gcgaattctg gcggcggcgc ttcttgaagg cgatgacctt
     1921 ctcgccgcgg gtctgcgcca ccacggtccc ggccaccgag accccggaca cgaccggggc
     1981 gccgacctcg acgccattgt cgttcgagag catcagcacc tggtcgaacg tgacggcctc
     2041 gcccggctcg cctgcgagct tggcgatggt gatggtgtcc tcggcggcga cgcggtactg
     2101 cttgccgccg gtcttgatca ctgcgaacat cttgaacctc gtgttcgacc cggttctcgg
     2161 cgcaatcccg ccggaccgg
//
LOCUS       DASQWN010000057         2735 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1003242, whole genome shotgun sequence.
ACCESSION   DASQWN010000057 DASQWN010000000
VERSION     DASQWN010000057.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2735)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2735)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2735
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1003242"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..553
                     /locus_tag="VE686_01095"
     CDS             <1..553
                     /locus_tag="VE686_01095"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009763728.1"
                     /note="catalyzes the DNA-template-directed extension of
                     the 3'-end of a DNA strand; the tau chain serves as a
                     scaffold to help in the dimerizaton of the alpha,epsilon
                     and theta core complex; the gamma chain seems to interact
                     with the delta and delta' subunits to transfer the beta
                     subunit on the DNA; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DNA polymerase III subunit gamma/tau"
                     /protein_id="HYY83076.1"
                     /translation="PRPSGPATSGNMALATSQAHPQPRPQAAQPEPTMRLRRFEDVVA
                     LAGEKREIVLKAALERDVRLVRFEEGRIELSLTETGSRTIANDLTRALQQWTGERWMV
                     ALSSEEGGATLHEKAVAAERERKEGAANHPLVQAVLSKFPGAQIVNVIERAEKPGEDA
                     ETEILGEADALAAHEAEEDDDLF"
     gene            569..889
                     /locus_tag="VE686_01100"
     CDS             569..889
                     /locus_tag="VE686_01100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003601785.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0008150 - biological_process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YbaB/EbfC family nucleoid-associated protein"
                     /protein_id="HYY83077.1"
                     /translation="MKDIMGLMKQAQAMQQKLQDAQAELDTLEVDGTAGGGVVTVKVT
                     GKGSLKSISIDPSLLNPDEKEILEDLIVAAMNDARGKAERITQERMESLTKGLPLPPG
                     LKLF"
     gene            959..1564
                     /gene="recR"
                     /locus_tag="VE686_01105"
     CDS             959..1564
                     /gene="recR"
                     /locus_tag="VE686_01105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015931249.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="recombination mediator RecR"
                     /protein_id="HYY83078.1"
                     /translation="MAQHVAGPEIERLIQLLARLPGLGPRSARRAALHLIKKRDTLLN
                     PLSDAMRVANERIVVCSSCGNVDTSEPCTICRDAKRDPSILVVVEDVSDLWALERAGA
                     VNARYHVLGGVLSPLDGVRPEHLNLDRLVARASEPGVSEVILALNATVDGQTTAHYIT
                     ELLAHLPVKVTKLAHGVPVGGELDYLDEGTLSAAIRQRTSF"
     gene            1794..2636
                     /gene="dapD"
                     /locus_tag="VE686_01110"
     CDS             1794..2636
                     /gene="dapD"
                     /locus_tag="VE686_01110"
                     /EC_number="2.3.1.117"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015927721.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008666 -
                     2,3,4,5-tetrahydropyridine-2,6-dicarboxylate
                     N-succinyltransferase activity [Evidence IEA];
                     GO_process: GO:0009089 - lysine biosynthetic process via
                     diaminopimelate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2,3,4,5-tetrahydropyridine-2,6-dicarboxylate
                     N-succinyltransferase"
                     /protein_id="HYY83079.1"
                     /translation="MSTADLAHTIDAAWEDRANVNPSTTGAVREAVEEAMSLLDSGRA
                     RVAEKTGGEWQVHQWLKKAVLLSFRLNDMGIVKGGPGNAVWWDKVPSKFDNWSETEFK
                     AAGFRAVPNCTVRRGAYIAPGVVLMPSFVNLGAYVDEGTMVDTWATVGSCAQIGKNVH
                     LSGGVGIGGVLEPLQASPTIIEDNCFIGARSEVVEGVIVGEGSVLSMGVFISASTKIV
                     DRDTGEVFVGRVPPYSVVVPGSLPGKPLPNGTPGPSLSCAVIVKRVDAQTRAKTGINE
                     LLRD"
BASE COUNT          476 a          908 c          916 g          435 t
ORIGIN      
        1 gcccaggccc tccggtcccg ccacctccgg caatatggcg ctggcgacct ctcaagctca
       61 tccgcagccg cgcccccagg ccgcgcagcc cgaaccgacc atgcgcctgc gtcgcttcga
      121 ggacgtggtg gcgcttgccg gcgagaagcg cgagatcgtc ctgaaggcgg cgctcgagcg
      181 tgacgtgcgc ctcgtgcgct tcgaggaggg ccgcatcgag ctcagcctca ccgagaccgg
      241 cagccgcacc atcgccaacg atctcacccg cgctctccag caatggaccg gcgaacgctg
      301 gatggtggcc ctgtcgtcgg aagagggggg agcgaccctc cacgagaagg cggtcgcggc
      361 cgagcgcgag cgcaaggaag gtgcggccaa tcatcccctg gtgcaggcgg tgctgtcgaa
      421 gtttcccggc gcgcagatcg tcaacgtgat cgagcgcgcg gagaagccgg gcgaggatgc
      481 ggaaacggaa atcctcggcg aggccgacgc gctggccgcg cacgaggctg aggaagacga
      541 cgatctgttt taattcaagg atacggtcat gaaggacatc atgggactga tgaagcaggc
      601 tcaggccatg cagcagaagc tgcaggacgc ccaggccgag ctcgacaccc tcgaggtcga
      661 cggcaccgcc ggcggcgggg tcgtgaccgt gaaggtgacc ggcaagggca gcctcaagtc
      721 gatcagcatc gatccctcgc tcctgaaccc ggacgagaag gagatcctcg aggatctcat
      781 cgtcgccgcc atgaacgacg cccgcggcaa ggccgagcgg atcacgcagg agcgcatgga
      841 gagcctcacc aagggccttc cgctgccgcc cggcctgaag ctgttctgag tgtcgtgcga
      901 agacgtggtt tgcggttctt cgcgtcgaac gacgcgacaa aagccaatga gaacctgaat
      961 ggcccagcac gttgccggcc ctgagatcga gcgcctgatc cagctcctcg cccgcctgcc
     1021 gggtctgggg ccgcgctcgg ccaggcgcgc ggcgctccat ctcatcaaga agcgggacac
     1081 gctgctcaac ccgttgagcg atgccatgcg cgtcgccaac gagcgtatcg tcgtgtgctc
     1141 gtcctgcggc aatgtcgata cctcggaacc ctgcaccatc tgtcgggacg ccaagcgcga
     1201 tccctccatc ctcgtggtcg tggaggacgt gtccgatctc tgggcgctcg aacgtgcggg
     1261 cgcggtcaac gccaggtatc atgtgctcgg cggcgtgctc tcgccgctcg acggcgtgcg
     1321 tcccgagcac ctgaatctcg accgcctcgt cgcccgcgcc tcggagccgg gcgtgagcga
     1381 ggtgatcctg gcgctgaacg ccacggtcga cgggcagacc acggcccatt acatcaccga
     1441 gcttctcgcg catctgcccg tgaaggtgac gaagctcgcc catggcgtgc cggtcggcgg
     1501 cgaactcgat tacctcgacg agggcacgct ctcagcggcg atccggcagc gcacgtcgtt
     1561 ctgagtcaaa tctgtttcac gccgccgtca tcaccggcct tgtgccggtg atcccgatga
     1621 agaaatgcgc tgcgcttcac aggatcggga tggccggagg ggggagccct ccgccgcggg
     1681 tcgggaatga caccgtgggg tttcagatcg agcaacaggc agatgatgac gtgacaggcc
     1741 ctggcgccgt tgctaatcag gcggcgacag aaaccccatt ccccgagttg cccatgtcca
     1801 ccgctgatct cgcccatacc atcgacgccg cctgggaaga ccgggccaat gtgaacccct
     1861 cgacgacggg cgccgtgcgc gaggccgtgg aggaggccat gagccttctc gattcgggca
     1921 gggcccgcgt cgccgagaag accggcggcg agtggcaggt gcatcaatgg ctgaagaagg
     1981 cggtgctgct gtccttccgc ctcaacgata tgggcatcgt caagggcgga ccgggcaacg
     2041 ccgtctggtg ggacaaggtg ccctcgaagt tcgacaactg gtccgagacc gagttcaagg
     2101 ccgcaggctt ccgcgccgta ccgaactgca ccgtgcggcg cggcgcctat atcgcgcccg
     2161 gcgtggtgct gatgccgtcc ttcgtcaatc tcggcgccta tgtggacgag ggcaccatgg
     2221 tcgacacctg ggcgacggtc gggtcctgcg cccagatcgg caagaacgtg catctgtccg
     2281 gcggcgtcgg catcggcggc gtgctggagc cgctccaggc cagcccgacc atcatcgagg
     2341 acaactgctt catcggcgcc cgctcggagg tcgtcgaagg cgtgatcgtg ggcgagggct
     2401 cggtgctgtc catgggcgtc ttcatctcgg cctcgaccaa gatcgtcgac cgcgacaccg
     2461 gcgaggtgtt cgtcggccgc gtgccgccct attcggtggt ggtccccggc tcgctccccg
     2521 ggaagccctt gccgaacggc acccccggcc cgtcgctctc ctgcgccgtg atcgtgaagc
     2581 gcgtcgatgc ccagacccgg gcgaagaccg gcatcaacga gctgttgagg gactagcgca
     2641 tcgtgcggac cttcggttcg cgccgtacga tgcgccgtct ttagaagctg agcatcggat
     2701 cgaccccaaa agtggagtcc acttttggtc cgatg
//
LOCUS       DASQWN010000058         2015 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_11352, whole genome shotgun sequence.
ACCESSION   DASQWN010000058 DASQWN010000000
VERSION     DASQWN010000058.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2015)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2015)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2015
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_11352"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..464
                     /locus_tag="VE686_01115"
     CDS             <1..464
                     /locus_tag="VE686_01115"
                     /inference="COORDINATES: protein motif:HMM:NF037832.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF5615 family PIN-like protein"
                     /protein_id="HYY83080.1"
                     /translation="TQASPSTGLMRCASGRKKMASRSNRRPPEVRFLIDECLNQALAL
                     VAREHGYDAAHVTKVGLGSTPDKVIAERAVQTGAIMVTNDARDYRRLYGRFVSHPGLV
                     ILLPSVGKARQLQLFEMVIDFIVAETSIVDHLVEIDAAARITVRPWPQPIP"
     gene            488..1468
                     /gene="denD"
                     /locus_tag="VE686_01120"
     CDS             488..1468
                     /gene="denD"
                     /locus_tag="VE686_01120"
                     /EC_number="1.1.1.410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015933575.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="D-erythronate dehydrogenase"
                     /protein_id="HYY83081.1"
                     /translation="MHILIIGAAGMVGRKLTERLVRDGSLGGREITRATLHDVVAPEK
                     PAKAPFEVTTLASDFSEVGEAEKLVAQRPDVIFHLAAIVSGEAEAEFDKGYRINLDGT
                     RRLFEAVRQVGDGYKPRLVFTSSVAVFGAPFPEAIGDEFFHTPLTSYGTQKAIGELLL
                     SDYSRRGFFDGVGIRLPTICVRPGKPNKAASGFFSNIIREPLAGHEAVLPVTEDVRHW
                     HASPRSAVGFLLHAATLDTAKLGWRRNLSMPGVSVTVGEQIDSLRRVAGDKVVARIRR
                     EPDPVIIGIVAGWPRNFAPNRAESLGFTAEKSFDDIVRAHIDDELGGKWA"
     gene            complement(1588..>2015)
                     /locus_tag="VE686_01125"
     CDS             complement(1588..>2015)
                     /locus_tag="VE686_01125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015928105.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="AprI/Inh family metalloprotease inhibitor"
                     /protein_id="HYY83082.1"
                     /translation="AYAIERKSELRIAGIAPPPVTPPAPALGVPQVTPIDPDKAPPFA
                     AVPGVYVVDRYTEKDVCRVDLGRGMLTVAGRHEVRLLEGCRDAGLAAFDPVAWRYEGG
                     RLTITARRGHEVTLISERPGQWRRDPEVGAMLVLRKVPQ"
BASE COUNT          313 a          712 c          680 g          310 t
ORIGIN      
        1 ctacccaagc ctccccttcg acgggattga tgcggtgcgc gagtgggcga aagaaaatgg
       61 cgtctcgctc gaaccgtcgg ccgcctgaag tacgcttcct gatcgacgag tgcctgaatc
      121 aggcactcgc cctcgtggcc cgagagcacg gctacgacgc cgctcacgtc acaaaggtcg
      181 gactcggaag cacacccgac aaggtgatcg ccgagcgcgc cgtccagacc ggcgcgatca
      241 tggtgaccaa cgacgcccgg gactatcggc gcctctatgg tcgctttgtc tcccatcccg
      301 ggctggtgat cctgctaccg tctgtcggca aggcgcgtca gcttcagctc ttcgaaatgg
      361 tcattgactt cattgtggcc gagacctcca tcgtggatca cctcgtggaa atcgacgcgg
      421 ccgcccggat caccgttcgg ccctggccgc agccaatccc ctgatccttg cgaaaatcgg
      481 agcagacatg cacatcctca tcatcggcgc ggccggcatg gtcgggcgca agctcacgga
      541 gcggctcgtc agggacggca gcctcggcgg gcgcgagatc acgcgggcga cgctgcacga
      601 cgtggtcgcg cccgagaagc ctgcgaaggc gcccttcgag gtgacgacgc tggcgtccga
      661 cttctcggaa gtgggcgagg ccgagaagct cgtggcgcag cgtcccgacg tgatcttcca
      721 cctcgccgcc atcgtttcgg gcgaggccga ggccgagttc gacaagggct accgcatcaa
      781 tctcgacggc acgcgccggc tgttcgaggc ggtgcgccag gtcggcgacg gctataagcc
      841 gaggctcgtc ttcacctcgt cggtcgcggt cttcggcgcg ccgttcccgg aagccatcgg
      901 cgacgagttc ttccacacgc cgctcacgag ctacggcacc cagaaggcca tcggcgagct
      961 gctcctgtcc gactactcgc gccgcggctt cttcgacggc gtgggcatcc ggctgccgac
     1021 catctgcgtg cggccgggca agcccaacaa ggcggcctcg ggcttcttct ccaacatcat
     1081 ccgcgagccg ctcgccggcc acgaagccgt gctgcccgtc accgaggacg tgcgccactg
     1141 gcacgcctcg cctcgatccg ccgtcggctt cctcctgcac gccgcgacgc tggacaccgc
     1201 gaagctcggc tggcgccgca atctcagcat gccgggcgtc tcggtgacgg tcggggagca
     1261 gatcgactcc ctgcggcgcg tcgcgggtga caaggtggtg gcgcgcatcc gccgcgagcc
     1321 cgacccggtg atcatcggca tcgtcgccgg ctggccgcgc aacttcgccc cgaaccgggc
     1381 cgagagcctt ggcttcacgg ccgagaagag cttcgacgat atcgtgcgcg cccacatcga
     1441 cgacgagctc ggaggcaagt gggcgtaggc gcgggccgcc acatccaatc acgccgtcat
     1501 ggccgggttt ggcccggcca tccggtcccg cgcgaggtcc cacggctcct cgggtatgcg
     1561 cttcgcttcg cccgaggatg acgacggcta ctgcggcacc tttcgcaaaa ccagcatggc
     1621 cccgacctcg gggtcccggc gccactggcc ggggcgctcg gagatcagcg tgacctcgtg
     1681 gccgcgccgt gccgtgatgg tgagccggcc gccctcgtag cgccacgcca cgggatcgaa
     1741 ggccgcgagg cccgcgtcgc ggcagccctc gagcaggcgc acctcatggc gcccggcgac
     1801 ggtgagcatg ccgcgcccga ggtcgacgcg gcagacgtcc ttctcggtgt agcggtcgac
     1861 gacgtagacc cccggcaccg ccgcgaaggg aggcgccttg tcggggtcga tgggcgtgac
     1921 ctgcggcact ccgagggcag gcgccggagg cgtgacgggt gggggggcga tgccggcgat
     1981 gcgcagctcg gacttgcgct cgatcgcata ggcat
//
LOCUS       DASQWN010000059         2746 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1301416, whole genome shotgun sequence.
ACCESSION   DASQWN010000059 DASQWN010000000
VERSION     DASQWN010000059.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2746)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2746)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2746
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1301416"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..130
                     /locus_tag="VE686_01130"
     CDS             <1..130
                     /locus_tag="VE686_01130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017271003.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HYY83083.1"
                     /translation="PATYRAKFADRYAHRLIEGVGHNLPQEAPRAFAAAVVEVDGL"
     gene            complement(134..745)
                     /locus_tag="VE686_01135"
     CDS             complement(134..745)
                     /locus_tag="VE686_01135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006337768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HYY83084.1"
                     /translation="MPDVTPIVYVVDDDVSVRESLELLIETAGWKPEAFASAQAFLAR
                     PRVAGPSCLVLDVTLPGLNGLELQEQLAGRTDMPIIFITGYGDVPMSVRAMKAGAVEF
                     LTKPFKDDVLLEAIRDAIERSRAALRLDAEMRTLRTCYESLTPREREVMALVVSGLLN
                     KQVGGELGISEITVKAHRGSMMRKMHAESLADLVHMAARLDVQ"
     gene            complement(835..1206)
                     /locus_tag="VE686_01140"
     CDS             complement(835..1206)
                     /locus_tag="VE686_01140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018859121.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HYY83085.1"
                     /translation="MDNLPLVSVVDDDESVRESLPDFLRQFGFAAEAFPSAEAFLASD
                     VVGTTSCLLLDIAMPGMSGPELQEELIRRRQKIPIVFITAHGDSTVRPRLLERGAVEC
                     LSKPFSEVALLDALSAALPKR"
     gene            complement(1206..>2746)
                     /locus_tag="VE686_01145"
     CDS             complement(1206..>2746)
                     /locus_tag="VE686_01145"
                     /inference="COORDINATES: protein motif:HMM:TIGR00229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="PAS domain-containing protein"
                     /protein_id="HYY83086.1"
                     /translation="ERKRAEDALAASERNLKLIIDTIPALAWSARPDGSAEFFNQHYL
                     DFIGFSAEQASGWGWTTAVHPDDVKGLAATWQRIMASAAPGETEARMRRHDGDYRWFL
                     FRTNPLRDESGAIVTWYGVNTDIEDRKQAEVELRRAYDSFADAQRLSKTGNFTADIVA
                     DDHIWSAELYRIFEIDPSTRITVQAVRDMIHPEDLPSFDAGFARSFAGVDFDLVFRIV
                     PASGNVKHVHAVGHFIERVAGRPLFIGAIQDVTEGMAAEEALNKARSELARVARVTTL
                     SALTASIAHEVNQPLSGIITNASTCLRMLDADPPNVEGARETVRRTLRDGNRASDVIT
                     RLRALFSRKEFTLESVDLNEATREVIALALSDLQRERIILESELAGDLPPVTGDRIQL
                     QQVILNLVRNASDAMVDVRDRPRQLLIRTERENGDRVRLIVRDTGVGLPPQSQISLFD
                     PFHSTKSGGMGIGLFVSASIIQRHQGRLWAESNDDGPGATFSFSIPRAAESILDAVPV
                     LRTS"
BASE COUNT          492 a          888 c          903 g          463 t
ORIGIN      
        1 gccggcgacg taccgcgcga agttcgcgga ccggtacgcg caccggctca tcgagggcgt
       61 cggccacaac ctgccgcagg aggcgccgcg cgccttcgcc gccgccgtcg tcgaggtgga
      121 cggcctgtga ccgctactga acgtcgagcc gcgcggccat gtgcacgaga tcggcgagcg
      181 actcggcgtg catcttccgc atcatgctgc cccggtgcgc cttgacggtg atctcgctga
      241 tgccgagctc gccaccgacc tgcttgttca acaggccgga aacgaccagg gccatcacct
      301 cgcgttcgcg cggcgtcagt gactcgtagc aggtccgcag ggtgcgcatc tccgcgtcga
      361 gacggagtgc ggcgcgactg cgctcgatgg catcgcgaat ggcctccagc agcacatcgt
      421 ccttgaacgg tttcgtgagg aactcgacgg ctccggcctt catcgcgcgc acgctcatgg
      481 gcacgtcgcc atagccggtg atgaagatga tcggcatgtc ggtccggccg gcgagctgct
      541 cctgcagctc caggccgttg agccccggaa gggtcacatc gagcaccaga cagctggggc
      601 cagcgacgcg ggggcgggcc aggaatgcct gtgccgaggc aaacgcttcg ggcttccagc
      661 ccgcagtctc gatcaacagc tccagcgatt cgcgcaccga gacgtcgtcg tcgacgacgt
      721 agacaatcgg cgtgacgtca ggcatgggga ggacctcgat cgaaggggag gcgatcgccg
      781 aggtcacagt atatggcgcg cgcgtagcgt atcccgcgct catcattggt acgcctacct
      841 cttcggaagc gcggcgctga gtgcgtcgag cagggccact tcgctgaacg gcttggacag
      901 gcactcgacg gccccgcgct cgaggaggcg cggacggacg gtgctatctc catgggcggt
      961 gataaagaca atcgggatct tctggcgccg gcgtatcagc tcctcttgca gctcggggcc
     1021 cgacatcccg ggcattgcga tgtcgagaag cagacagctc gtcgtaccca cgacatcgga
     1081 tgcgaggaac gcttcggccg acgggaaggc ctcggcggca aacccgaact gccgtaggaa
     1141 atccggcaac gactcgcgta ccgactcatc gtcgtcgacg accgacacca gcggtagatt
     1201 gtccatcacg atgtcctcaa taccgggacc gcgtccagga tgctctctgc agcgcgggga
     1261 atggaaaacg agaacgtggc gccaggccca tcgtcgttcg actcggccca gagacgaccc
     1321 tggtggcgct ggatgatcga ggcgctgaca aacaacccga tgcccatgcc gccgctcttg
     1381 gtggagtgga agggatcgaa cagcgagatc tggctctggg gcgggaggcc cacgccagta
     1441 tcgcggacga tcagccggac acggtcgccg ttctcccgct cggttctgat cagcaactgt
     1501 cgcgggcgat ctcgcacgtc gaccatcgcg tccgacgcat tgcggaccag attcaggatg
     1561 acctgctgga gctgaatacg gtcgccggtg accggcggga ggtcgccggc gagctccgat
     1621 tcaagaatga tgcgctccct ctgcaggtca ctcaatgcca gcgcgatgac ctcgcgggtg
     1681 gcctcgttca gatccaccga ctcgagcgtg aactccttcc tgctgaacag agcccggagt
     1741 cgtgtgatca catccgaggc gcggttgcca tcgcgaaggg tccgcctcac ggtctcacgc
     1801 gcgccttcga cgttcggcgg atcggcatcc agcatgcgaa ggcacgtact ggcgttggtg
     1861 atgatgcccg aaagcggctg gttgacctca tgcgcgatcg aggcggtcaa cgcgctcagg
     1921 gtcgtgacgc gcgccacacg ggcgagctca gagcgggctt tgttcagggc ctcctccgcg
     1981 gccatgccct cagtcacgtc ctgaatagcg ccaatgaaca ggggtcgacc cgcgacgcgc
     2041 tcgataaagt ggccgacggc atggacatgc ttcacgtttc cgctagcggg gacgatgcgg
     2101 aagacgagat cgaaatccac cccagcaaag gagcgcgcga acccggcgtc gaacgacggc
     2161 aggtcctcgg ggtggatcat gtcgcgaacc gcctgcacgg tgatcctggt ggagggatcg
     2221 atctcgaaga tgcggtagag ctccgcggac cagatgtggt cgtccgccac gatgtccgcg
     2281 gtgaagttgc ccgtcttgct gagccgctgg gcgtcggcaa aactgtcgta cgcccgtctt
     2341 agctccactt cggcctgctt gcggtcctcg atgtcggtgt tcacgccata ccacgtgacg
     2401 atggccccgg actcatcgcg caacgggttc gtccggaaca ggaaccaccg atagtcgccg
     2461 tcatgccggc gcatgcgcgc ttcggtctct cctggcgcgg cggaggccat gatgcgctgc
     2521 cacgtcgccg ctaacccctt cacatcgtcg gggtggacgg cagtcgtcca accccaaccg
     2581 ctggcctgct cggccgaaaa gccaatgaag tccagatagt gctggttgaa gaactcggca
     2641 cttccatccg gacgcgccga ccaggccagc gccggaatgg tgtcgatgat gagcttgagg
     2701 ttacgctcgc tcgccgcgag cgcgtcctcg gcgcgtttgc gctcgt
//
LOCUS       DASQWN010000060         2188 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1003477, whole genome shotgun sequence.
ACCESSION   DASQWN010000060 DASQWN010000000
VERSION     DASQWN010000060.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2188)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2188)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2188
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1003477"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..236
                     /locus_tag="VE686_01150"
     CDS             <1..236
                     /locus_tag="VE686_01150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019401509.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="malonyl CoA-acyl carrier protein transacylase"
                     /protein_id="HYY83087.1"
                     /translation="EATQDPAAIRELLARQVTARVRWRESMASMRDLGVDAVVEFGAG
                     KVLTGLVKRIAAGAGATAIGTPEDVAIFKGATG"
     gene            253..990
                     /gene="fabG"
                     /locus_tag="VE686_01155"
     CDS             253..990
                     /gene="fabG"
                     /locus_tag="VE686_01155"
                     /EC_number="1.1.1.100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003599979.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004316 - 3-oxoacyl-[acyl-carrier-protein]
                     reductase (NADPH) activity [Evidence IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-oxoacyl-[acyl-carrier-protein] reductase"
                     /protein_id="HYY83088.1"
                     /translation="MFDLTGRKALVTGASGGIGDAIARALHAQGATVALSGTRRAALD
                     EVASALGERVEIIEANLSAKDSVEGLVPAAEAAMDGLDILINNAGVTRDGLFMRMKDE
                     DWDAVIAVNLTAAFRLSRAAVKGMMRRRYGRIVNIGSIVGSMGNPGQGNYAASKAGLI
                     GMTKSLAAEVASRGITVNCVSPGMIESAMTDVLNEKQREGMLSTIPMRRLGQPAEVAA
                     AVTYLCAEEAAYVTGHTFHVNGGMAMF"
     gene            1228..1464
                     /locus_tag="VE686_01160"
     CDS             1228..1464
                     /locus_tag="VE686_01160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018044468.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl carrier protein"
                     /protein_id="HYY83089.1"
                     /translation="MSDIADRVKKIVVEHLGVEADKVTENANFIDDLGADSLDTVELV
                     MAFEEEFNVEIPDDAAETIVTVGDAIKFLEKNAA"
     gene            1518..>2188
                     /locus_tag="VE686_01165"
     CDS             1518..>2188
                     /locus_tag="VE686_01165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009764366.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl synthase N-terminal-like
                     domain-containing protein"
                     /protein_id="HYY83090.1"
                     /translation="MRRVVITGLGMVTPLGCGVEVTWRKLLDGVSGAAVIDAFEVSDL
                     ACRIACSIPRGDGSDGTFNPDDWMEPKEQRKVDPFIVYAMAAATQAIRDSGWTPTTYE
                     EQTSTGVLIGSGIGGIGGIYDASVTLYEKGPRRVSPFFIPGRLINLASGYVSIEHGLK
                     GPNHSVVTACSTGSHAIGDAARLIALGDAEVMVAGGAESPINRLSLAGFAACRALSTN
                     FNDDPT"
BASE COUNT          358 a          736 c          771 g          323 t
ORIGIN      
        1 ccgaggcgac ccaggacccg gccgcgatcc gcgagctcct ggcccggcag gtgaccgccc
       61 gcgtccgttg gcgcgagagc atggcctcga tgcgggactt gggggtggac gcggtggtgg
      121 agttcggcgc cggcaaggtc ctgaccggcc ttgtcaagcg tatcgccgcc ggcgccggcg
      181 cgacggccat tggcacgccc gaagacgtcg cgatcttcaa gggcgcgacc ggctaacctc
      241 gaaaggtctc ccatgttcga tctcacgggc cgaaaggcgc ttgtcaccgg cgcgagcggc
      301 ggcatcgggg atgcgatcgc gcgcgccctg cacgcgcagg gcgcgaccgt ggcgctgtcc
      361 ggaacgcgcc gtgcggcgct cgacgaggtc gcgagcgcgc tcggcgagcg cgtcgaaatc
      421 atcgaggcga acctgtccgc caaggactcg gtcgagggcc tcgtgcccgc cgccgaggcg
      481 gccatggacg gcctcgacat ccttatcaac aacgccggcg tgacccgcga cggccttttc
      541 atgcgcatga aggacgagga ttgggacgcg gtcatcgccg tgaacctgac ggcggctttc
      601 cggctctcgc gcgccgccgt gaagggcatg atgcgccgcc gctacgggcg catcgtcaac
      661 atcggctcca tcgtcggatc catgggcaac ccggggcagg ggaactatgc cgcgtcgaag
      721 gccggcctca tcggcatgac gaagtcgctc gccgccgagg tcgccagccg cggcatcacg
      781 gtcaactgcg tgtcgcccgg catgatcgag tcggcgatga cagacgtcct gaacgagaag
      841 cagcgcgaag gcatgctttc gaccatcccg atgcggcgcc tcggacagcc ggcggaggtt
      901 gccgccgccg tgacctacct ctgcgccgag gaggccgcct acgtgaccgg gcacacgttc
      961 catgtgaacg gcggaatggc aatgttctga ggcggttggc gctcgccttg ctgccgcgct
     1021 gaagagtcgg tcgcgccgcc ggcggcgcgc gttacctgta gagcgggagg gaccggcgcc
     1081 cctgaggggg ttgacccggg cgcgaaatgc gggtttgcac gatgccagca ctgctgcacg
     1141 cgcgaggcac ggagcacgcg cgttggcgtt gtccctggac ccgccgcgtc ggcggacatt
     1201 cacgacgagt gagacgaggt aggaacgatg agtgacatcg ctgatcgggt gaagaagatc
     1261 gttgtcgagc acctgggcgt cgaggccgac aaggtgaccg agaacgccaa cttcatcgac
     1321 gacctcggcg ccgacagcct cgacaccgtc gagctcgtga tggcgttcga ggaagagttc
     1381 aacgtcgaga tccccgacga cgcggccgag accatcgtca ccgtcggcga cgcgatcaag
     1441 ttcctcgaga agaacgcggc ttgagggggc gcctcgagcg ggtcacctcg agacccgcgc
     1501 gaggacagga caccggcatg cggcgcgtcg tcatcaccgg gctgggcatg gtgaccccct
     1561 tgggctgcgg ggtcgaagtc acctggcgca agctcctcga cggagtgagc ggcgcggccg
     1621 tgatcgacgc cttcgaggtg tccgatctcg cctgcaggat cgcctgctcc atcccgcgcg
     1681 gcgacggctc ggacggcacc ttcaatcccg acgattggat ggagccgaag gagcagcgca
     1741 aggtcgatcc gttcatcgtc tacgccatgg cggctgccac gcaggcgatc cgcgactccg
     1801 gctggacgcc gaccacctac gaggagcaga cgagcacggg cgtgctcatc ggctccggca
     1861 tcggcggcat cggcggcatc tacgacgcct cggtgacgct ctacgagaag ggcccccggc
     1921 gggtctcgcc gttcttcatc ccgggccgcc tcatcaacct cgcttcgggc tacgtatcga
     1981 tcgagcacgg gctcaagggg cccaaccact cggtggtgac cgcctgctcg acgggatcgc
     2041 acgccatcgg cgatgcggcg cggctgatcg cgctcggcga cgccgaggtc atggttgcgg
     2101 gcggcgccga gtcgccgatc aaccgcctct cgcttgccgg cttcgcggcc tgccgcgcgc
     2161 tgtcgacgaa cttcaatgac gacccgac
//
LOCUS       DASQWN010000061         3849 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_705726, whole genome shotgun sequence.
ACCESSION   DASQWN010000061 DASQWN010000000
VERSION     DASQWN010000061.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 3849)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3849)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3849
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_705726"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..966
                     /locus_tag="VE686_01170"
     CDS             <1..966
                     /locus_tag="VE686_01170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018647739.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CoA-binding protein"
                     /protein_id="HYY83091.1"
                     /translation="AFTTSYDVVGSTALASQSGGIGMGILGFARSTKLGVAAIVGLGN
                     KADIDEDDLLTFFEQDDNTQCVALHMEDLKDGRSFVEVAQRVSKKKPIVVLKAGATPA
                     GSKAAASHTAALAGDDKVYDDILRQAGVVRANGLRDLLELARALPVLPTPTGENVVII
                     TGAGGSGVLLSDACYNGGLQLMEMPDDLNEAFMKFIPPFGAAGNPVDITGGEPPETYA
                     NTIRLGLEDERIHSLVLGYWHTIITPPMTFAKVVAEVVEEYKGKGIEKPIVASLAGDV
                     EVEEASQYLFERGVPAYPYTTETPVEVLAAKYRWARMAGLLDGKR"
     gene            1110..2627
                     /locus_tag="VE686_01175"
     CDS             1110..2627
                     /locus_tag="VE686_01175"
                     /inference="COORDINATES: protein motif:HMM:NF037982.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Nramp family divalent metal transporter"
                     /protein_id="HYY83092.1"
                     /translation="MEVTESDRQPGDRGPGAVTLDETGTERVWRAGKLPPMPIRKLPE
                     APQAAHIIGPAMILVALGVGLGETFLWPRLVIVFGPNIRWMFLIGVLVQTVVMLEMAR
                     YAMATGESIFFGAARIWQPLMWMFFVIAIAVYIWPGHISTGADALEDLTGIPWQLSAS
                     VGLVIIGLMFTIVKFVYNIVEAVLAFLVGVLVIGSAIVAAIVGSIDDLGKVLVGLVRF
                     DFGVPHAAVTAAWFPIIVGSIAFAGPSGMQQMWYTLWLRDKGAGMGVHMPRVRGLLHA
                     GEEETIPDSGSMFDVDDPDEMRKWNDWRKWVRYDAILLFFGITMLVTIIFTVMAMHAA
                     EVNPDARNQLLNGERDAALQAMKDSFSSTAGILGTLFFIFISIVGWKASVGLFDAFAR
                     GQSDMTYYFLPGAKKLKLSYLYGIFLWLVIIFGILIINFGPVDGPTAILNVLAFFSAF
                     VMGAYCLVLAAVNRRLLPKKIQPSWIVTVVLVLGGLTYLGMLFYSWIKFGVTDLG"
     gene            2654..3247
                     /locus_tag="VE686_01180"
     CDS             2654..3247
                     /locus_tag="VE686_01180"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY83093.1"
                     /translation="METPAPRGLSTHYGVLDRRQVAELSAPGAAIGLLGGVIAGWLLA
                     ISGLSLPITLVATVLLAVPLALAGALYEILMAKGRVPMGTLAGAAMVWAVAWPVIRLV
                     HGAVVDLIAGNGIATPGGILSFFVYQILVSVPFAIGFWWLHENFAPRWWFHIRDRNPV
                     ANHYIRVQLQYAEAAELEKERQRVRRAARAQARRDKS"
     gene            3329..>3849
                     /locus_tag="VE686_01185"
     CDS             3329..>3849
                     /locus_tag="VE686_01185"
                     /inference="COORDINATES: protein motif:HMM:NF020031.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-grasp domain-containing protein"
                     /protein_id="HYY83094.1"
                     /translation="MDLLEYQGKQLFARHDIPVPNGRPATTLGEALDAADAIGYPCVI
                     KAQVQIGGRGKLGGIKVAQNKDEAREHAGNILGMDIRGLTVHELWIEEASEIETEWYA
                     SIVFDRAAKAPLVMLSTKGGMDIEAVAEEDPDAIATLHVDPLIGFQDFHGRKLAFDAK
                     VDADLVRPVGAFLA"
BASE COUNT          599 a         1292 c         1326 g          632 t
ORIGIN      
        1 gcgttcacga cgtcgtacga cgtcgtcggc tcgaccgcgc tggcgtcgca gtccggcggc
       61 atcggcatgg gcatccttgg cttcgcccgc tcgaccaagc tcggcgtcgc cgcgatcgtc
      121 ggcctcggca acaaggccga catcgacgag gacgatctgc tgacgttctt cgagcaggac
      181 gacaacacgc agtgcgtcgc cctgcacatg gaggacctca aggacgggcg ctcgttcgtc
      241 gaggtcgccc agcgcgtctc gaagaagaag ccgatcgtcg tcctgaaggc cggcgccacg
      301 ccggccggct cgaaggcggc cgcgtcgcac accgcggcgc tcgccggcga cgacaaggtc
      361 tacgacgaca tcctgcgcca ggcgggcgtc gtgcgggcca acggcctgcg cgacctgctc
      421 gagctggccc gggcgctgcc cgtcctgccg acgccgaccg gtgagaacgt cgtgatcatc
      481 accggcgccg gcggctcggg cgtgctgctg tcggacgcct gctacaacgg cggcctccag
      541 ctcatggaga tgccggacga cctcaacgag gcgttcatga agttcatccc gccgttcggt
      601 gcggccggca acccggtcga catcaccggc ggcgagcccc ccgagaccta cgcgaacacg
      661 atccgcctgg gcctcgagga cgagcgcatc cattcgctcg tgctgggcta ctggcacacg
      721 atcatcaccc cgccgatgac cttcgccaag gtcgtcgcgg aggtggtcga ggagtacaag
      781 ggcaagggca tcgagaagcc gatcgtggcg tcgctcgccg gggacgtcga ggtcgaggag
      841 gcctcgcagt acctgttcga gcgcggcgtc cctgcctacc cgtacacgac cgagacgccg
      901 gtcgaggtgc tagcggccaa gtaccgctgg gcccgcatgg ccggcctgct cgacggcaag
      961 cgctgagggc ggcacggtcc ggcacgaaag gaggaggaga gtcacggcgc aggagcgcag
     1021 aggtacgcag ggcgcgggca gaggaggcga tcccggcggg atggtcggcc gcgccaaaga
     1081 agtgtcgaag ttccgaacag gggagagcaa tggaagtcac tgagagcgac cggcagcccg
     1141 gcgatcgcgg ccctggcgcc gtcacgctgg acgagaccgg taccgaacgg gtctggcgcg
     1201 cgggcaagct cccgccgatg ccgatccgca agctgcccga ggcgccgcag gcggcgcaca
     1261 tcatcgggcc ggcgatgatc ctggtggcgc tcggcgtggg cctgggcgag acgttcctct
     1321 ggccgcgcct cgtcatcgtg ttcggcccga acatccggtg gatgttcctc atcggcgtgc
     1381 tcgtgcagac cgtcgtcatg ctcgagatgg cccgctacgc gatggcgacg ggggaatcca
     1441 tcttcttcgg agcggcgcgc atctggcagc cgcttatgtg gatgttcttc gtcatcgcga
     1501 tcgcggtgta catctggccc ggccatatct cgacgggcgc ggacgccctc gaggacctga
     1561 cgggcatccc atggcagctg tccgcatcgg tcggtctggt catcatcggc ctgatgttca
     1621 cgatcgtgaa gttcgtctac aacatcgtcg aggccgtgct cgcattcctc gtcggtgtgc
     1681 ttgtgatcgg gtcggcgatc gtcgcggcga tcgtgggcag catcgacgat ctcggcaagg
     1741 tccttgtcgg gctcgtgcgt ttcgacttcg gggtcccgca cgccgccgtg acggccgcct
     1801 ggttcccgat catcgtcggc tcgatcgctt tcgcgggccc ctccggcatg cagcagatgt
     1861 ggtacacgct gtggctgcgc gacaagggcg cgggcatggg cgtccacatg ccgcgcgtcc
     1921 gcggcctgct gcacgcgggc gaggaggaga cgatccccga ctccggctcc atgttcgacg
     1981 tggatgaccc ggacgagatg cggaagtgga acgactggcg caagtgggtc cgctacgacg
     2041 cgatcctgct gttcttcggc atcacgatgc tggtcacgat catcttcacg gttatggcca
     2101 tgcacgcggc ggaggtcaac ccggacgcgc gcaaccagct cctgaacggt gagcgcgacg
     2161 cggcgcttca ggcgatgaag gactcgttct cgtcgacggc cggcatcctc ggcacgctgt
     2221 tcttcatctt catctcgatc gtcggctgga aggcgagcgt gggcctgttc gacgccttcg
     2281 cccgcggcca gtcggacatg acgtactact tcctgcccgg cgcgaagaag ctgaagctgt
     2341 cgtacctcta cggcatcttc ctgtggctcg tgatcatctt cgggatcctg atcatcaact
     2401 tcggtcccgt cgatggcccg accgccatcc tgaacgtgct cgcgttcttc tcggcgttcg
     2461 tgatgggcgc gtactgcctc gtcctggcgg cggtcaaccg caggcttctg ccgaagaaga
     2521 tccagcccag ctggatagtc actgtggtcc ttgtgctcgg tggcctgaca tacctgggca
     2581 tgctgttcta ctcgtggatc aagttcggcg tcacggatct cggctgatgc aggcgatccg
     2641 agcagaacga gggatggaaa cccccgcccc gcgcggactc tctacccact acggcgtgct
     2701 cgaccggcgc caggtggcgg agctgtccgc gccgggtgcg gcgatcgggc tgctcggcgg
     2761 cgtgatcgcg ggatggctgc tcgccatcag cgggctgtcc ctcccgatca cgctggtggc
     2821 caccgtcctg ctggcggtgc cgctcgcact cgcgggcgcc ctgtacgaga tcctgatggc
     2881 gaagggccgc gtgccgatgg gcacgctcgc gggcgcggcc atggtgtggg cggtcgcctg
     2941 gcccgtgatc cgtctggttc acggcgcggt ggtcgatctg attgccggga acgggatcgc
     3001 gacgccgggc ggcatcctgt cgttcttcgt ctaccagatc ctcgtcagcg tgcccttcgc
     3061 catcggcttc tggtggctgc acgagaactt cgcgccgcgg tggtggttcc acatccggga
     3121 ccgcaacccc gtcgcgaacc actacatccg cgtgcagctg cagtacgccg aagcggccga
     3181 gctggagaag gagcgccagc gcgtgcgcag ggcggcacgg gcgcaggccc gccgcgacaa
     3241 gtcgtagggg gaatggcccc cgcccagcag ccggatgacg aggccctccg cgagggcctc
     3301 gtcgccgctg ccgaacccgg aaggtgacat ggatctactc gaataccagg gcaagcagct
     3361 cttcgcccgc cacgacatcc cggtacccaa cgggcgcccg gcgaccacgc tcggcgaggc
     3421 gctcgacgcg gccgacgcga tcggctaccc gtgcgtcatc aaggcgcagg tgcagatcgg
     3481 cgggcgcggc aagctcggcg gcatcaaggt cgcccagaac aaggacgagg cccgcgagca
     3541 cgccggcaac atcctcggca tggacatccg gggcctgacc gtccacgagc tctggatcga
     3601 ggaggcctcg gagatcgaga ccgagtggta cgcgtcgatc gtcttcgacc gcgccgccaa
     3661 ggcgccgctc gtcatgctct cgaccaaggg cggcatggac atcgaggcgg tcgccgagga
     3721 ggaccccgac gcgatcgcga cgctgcacgt cgacccgctg atcggctttc aggacttcca
     3781 cgggcgcaag ctcgcgtttg acgccaaggt cgacgcggac ctggtgcgcc cggtcggcgc
     3841 cttcctcgc
//
LOCUS       DASQWN010000062         2779 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_501768, whole genome shotgun sequence.
ACCESSION   DASQWN010000062 DASQWN010000000
VERSION     DASQWN010000062.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2779)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2779)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2779
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_501768"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..462)
                     /locus_tag="VE686_01190"
     CDS             complement(<1..462)
                     /locus_tag="VE686_01190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019403112.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PAS domain-containing sensor histidine kinase"
                     /protein_id="HYY83095.1"
                     /translation="MNASDSAIAAPRLEVGGRGPVWLGTLVVALALASALATFVVLAG
                     MTPILPTHDVVVWMLLGNVVLVLLLLATVAWQAQALVRARLAGAAGAGLHVRIVGLFS
                     LVATLPAVLVAGVAMVTLERGLDPWFAGSLRDIMGNTVAIAEAFRDSQCRSL"
     gene            complement(559..2007)
                     /gene="ntrC"
                     /locus_tag="VE686_01195"
     CDS             complement(559..2007)
                     /gene="ntrC"
                     /locus_tag="VE686_01195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017486081.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006808 - regulation of nitrogen
                     utilization [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nitrogen regulation protein NR(I)"
                     /protein_id="HYY83096.1"
                     /translation="MPSGHILLADDDAAIRTVLNQALSRAGYEVRSTSNAATLWRWVA
                     QGEGDLIITDVVMPDENAFDLLPRIKRLRPELPIIVMSAQNTFMTAIRASERGAYEYL
                     PKPFDLKELVAVVGRALSRPHGATINNGPGEPDDIPLIGRSPAMQEIYRALARLMPTD
                     LTVMISGESGTGKELVARALHDYGKRRNGPFVAVNMAAIPRELIESELFGHEKGAFTG
                     ATARSAGRFEQAEGGTLFLDEIGDMPMEAQTRLLRVLQQGEYTTVGGRVPIKTNVRIV
                     AATNKDLRISIQQGLFREDLFFRINVVPLRLPPLRERVEDIPDLVRHFFTLVSKEGLS
                     RKQVDFEAMERLKRHRWPGNVRELENLVRRLAALYPQETITGPIMEAELDTGPATMAL
                     QGTTATGDEDGLSAAVERHLADYFGTFKGVLPPPGLYHRVLREIEGPLIGAALAATRG
                     NQIRAAELLGVNRNTLRKKVRDLDLQVIRSAR"
     gene            complement(2013..>2779)
                     /locus_tag="VE686_01200"
     CDS             complement(2013..>2779)
                     /locus_tag="VE686_01200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019903421.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HYY83097.1"
                     /translation="DKMDRQLTHRGAARSVTALGAMLAHEIKNPLSGIRGAAQLLEQS
                     VVDDDDRVLTRLICDEADRIVKLVERVELFGDERPVERGPVNVHGVLDQVKRLAQSGF
                     AQHIRFVETYDPSLPPVLGNRDQLVQVLLNLVKNAAEAIGGDTVDGEIVLSTAFRTGV
                     RLQVPGSRERVSLPIELAVRDSGPGVPADLVDELFDPFVTTKAQGSGLGLALVAKIVG
                     DHGGIVECDPAPRRTTFRLLLPMYSARDGRAPDVEV"
BASE COUNT          441 a          931 c          982 g          425 t
ORIGIN      
        1 gagactccgg cactgcgagt cgcgaaaggc ttcggcaatc gcgacggtgt ttcccatgat
       61 gtccctgagg gagcccgcga accaggggtc gaggccacgc tcgagcgtca ccatggcgac
      121 cccggcgacg aggacggccg gcaaggtcgc gacgaggctg aagagcccga cgatccgcac
      181 atgcagcccc gcgccggcgg cccccgccag ccgcgcgcga accagcgcct gcgcctgcca
      241 cgccacggtc gcgaggagca ggagcacgag gacgacatta ccgagcagca tccacaccac
      301 gacgtcgtgg gtcgggagga tgggcgtcat cccggcgagc acgacgaagg tcgccagcgc
      361 cgaggcgagc gccagcgcga cgaccagcgt gccgagccac actggcccgc gcccgcctac
      421 ctccaggcgc ggcgccgcga tcgcgctatc ggatgcattc aagaaagctg ccccgcgtac
      481 gtagccggcg agcaatcgcc gttcttggtg cagcaccaca acactgtggc cgaaataata
      541 caatttggct ggggcgcctc aacgggcgga gcggatcacc tgcaggtcga gatcccgcac
      601 tttcttgcgc agcgtatttc ggttcacgcc gaggagctcg gccgcccgga tctggttccc
      661 tcgcgtcgcc gccagcgccg cgccaatcag cggaccttcg atctcgcgca ggacgcggtg
      721 gtagagcccc ggcggcggca ggacgccctt gaaggtgccg aagtagtcgg cgagatggcg
      781 ctcgaccgcg gccgacaggc cgtcctcgtc cccggtcgcc gtcgtgcctt gcagcgccat
      841 ggtggctggg ccggtgtcga gctccgcctc catgatggga cccgtgatgg tctcctgcgg
      901 gtagagcgcg gcgaggcggc ggacgagatt ctcgagctca cgcacgttcc ccggccagcg
      961 gtggcgcttg aggcgttcca tggcctcaaa gtcgacctgc ttgcgcgaca gtccctcctt
     1021 cgaaaccagg gtgaagaagt gccgcaccaa gtcggggatg tcctcgaccc gctcccgcaa
     1081 cggtggcagc cggagcggca ctacgttgat gcgaaagaac aggtcctcgc ggaacaggcc
     1141 ctgctggatc gagatgcgca ggtccttgtt ggtggcggcg acgatgcgga cgttggtctt
     1201 gatcggcacg cggcctccga ccgtcgtgta ctcgccttgc tgcagcacgc gcaggaggcg
     1261 cgtctgcgcc tccatgggca tgtcgccgat ctcgtcgagg aacagggttc cgccctcggc
     1321 ctgctcgaag cggccagcgc tgcgggcggt cgcgcccgtg aaggcgccct tctcgtgccc
     1381 gaacagctcc gattcgatga gctcgcgcgg gattgccgcc atgttgacgg cgacgaaggg
     1441 accgttgcgg cgcttgccgt agtcgtgcag cgcgcgcgcg acgagttcct tcccggtgcc
     1501 cgactcgccg ctgatcatca cggtcaggtc cgtcggcata aggcgcgcca gcgcccggta
     1561 gatctcctgc atggccggcg agcggccgat gagggggatg tcgtccggct cgccggggcc
     1621 gttgttgatg gtcgccccgt gcgggcgcga cagggcgcgg ccaacgacgg ccacgagctc
     1681 cttgagatcg aagggtttcg gcaggtactc atacgcgccg cgctccgacg cgcggatcgc
     1741 ggtcatgaac gtgttctggg cgctcatgac gatgatgggc agctcgggcc ggagccgctt
     1801 gatgcgcggc aggaggtcga aagcgttctc gtcgggcatc accacgtcgg tgatgatgag
     1861 atcgccttcc ccttgcgcca cccagcgcca cagggtggcg gcattggagg tggagcggac
     1921 ctcgtagccg gcccgggaca gcgcttggtt cagcacggtc cggatcgcgg catcatcgtc
     1981 ggcgagaagg atatgtccgc tcggcatcgg catcagacct caacgtcggg tgcgcgcccg
     2041 tcacgggcgc tgtacatcgg caagagcagg cggaacgtcg tgcgccgcgg agccgggtcg
     2101 cactcgacga tcccgccgtg gtcgccgacg atcttcgcca ccaaggcaag tccgaggcca
     2161 cttccctggg ccttggtggt cacgaaggga tcgaaaagct catcgacgag gtcggccgga
     2221 acgccgggcc cgctgtcgcg caccgcgagc tcgatcggca ggctgacgcg ctcacgcgac
     2281 cctggaacct gcagccgcac gccggtgcgg aaggccgtcg agagcacgat ctccccgtcg
     2341 acggtatcgc ccccgatggc ttcggcggcg ttcttgacga ggttcaggag cacctggacg
     2401 agctggtcac ggttgccgag caccggcggc agggaggggt cgtaggtctc gacgaaccgg
     2461 atgtgctggg cgaagcccga ctgcgccagc cgcttcacct gatcgaggac gccgtgcacg
     2521 ttgacgggtc cgcgctcgac cgggcgttcg tcgccgaaca gctcgacccg ctcgacgagc
     2581 ttcacgatgc ggtcggcctc gtcgcagatg agccgcgtga gaacgcggtc gtcgtcgtcc
     2641 acgaccgact gctcgaggag ctgcgcggcg ccgcggatgc ccgagagggg gttcttgatc
     2701 tcgtgggcca gcatggcgcc gagcgccgtc accgaacggg cggcgccgcg gtgggtgagc
     2761 tgccggtcca tcttgtcgg
//
LOCUS       DASQWN010000063         2321 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1302200, whole genome shotgun sequence.
ACCESSION   DASQWN010000063 DASQWN010000000
VERSION     DASQWN010000063.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2321)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2321)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2321
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1302200"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..820
                     /gene="groEL"
                     /locus_tag="VE686_01205"
     CDS             <1..820
                     /gene="groEL"
                     /locus_tag="VE686_01205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010682003.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="chaperonin GroEL"
                     /protein_id="HYY83098.1"
                     /translation="CAVKAPGFGDRRKAMLEDIATLTGGKMIAEDLGIKLENVTLQML
                     GRAKKVRIEKENTTIIDGAGSKHDIEARVGQIKAQIEETTSDYDREKLQERLAKLAGG
                     VAVIRVGGATEVEVKEKKDRVDDALNATRAAVEEGIVPGGGVALLRAKQAINQTKNEN
                     SDIQAGFNIVLKALEAPIRQIAENAGVEGSIVVGRINDNKSQTFGFNAQTEEYVDMLS
                     AGIVDPAKVVRAALQDAASIAGLLITTEAMVAEAPKKESAPAMPGGGGMGGMDY"
     gene            928..>2321
                     /gene="hisS"
                     /locus_tag="VE686_01210"
     CDS             928..>2321
                     /gene="hisS"
                     /locus_tag="VE686_01210"
                     /EC_number="6.1.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019401303.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004821 - histidine-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006427 - histidyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidine--tRNA ligase"
                     /protein_id="HYY83099.1"
                     /translation="MSSKTDNKLKARLPRGFADRGAGDLAATERMLAAIRETYELYGF
                     EALETPFVEYTDALGKFLPDQDRPNEGVFSFQDDDEQWLSLRYDLTAPLARHVAENFD
                     ALPKPYRSYRAGFVFRNEKPGPGRFRQFMQFDADTVGASSVAADAEICMMAADTLERV
                     GIARGDYVIKVNNRKVLDGVMEAIGLSGDDKAGQRLTVLRAIDKLDRLGVDGVRQLLG
                     AGRKDESGDYTKGAGLADEQIDRVQKYFSYQVKPSTDQDRVDFWDRFFVDWSDVVGDS
                     ERGREGIAELHAIMRLCSAAGYGNDRVRADPSVVRGLEYYTGPVYEAELTFEVTNDDG
                     QAVRFGSVAGGGRYDGLVGRFRSEPVPATGFSIGVSRLFAALKAVGSPLLAGGKALPL
                     IVVTVMDRERFADYQRMVSELRGLRDADGAPLVRAEMYLGDARFNAQMKYADKRGAVC
                     VVIQGSDEHARGEV"
BASE COUNT          400 a          793 c          807 g          321 t
ORIGIN      
        1 ctgcgcggtg aaggcgcccg gcttcggtga ccgcaggaag gccatgctgg aggacatcgc
       61 caccctgacc ggtgggaaga tgatcgccga ggacctcggc atcaagctcg agaacgtgac
      121 gctccagatg ctcggccgcg ccaagaaggt gcgcatcgag aaggagaaca ccacgatcat
      181 cgacggcgcc gggtcgaagc acgacatcga ggcgcgcgtg gggcagatca aggcgcagat
      241 cgaggagacc acctcggact acgaccgtga gaagctccag gagcgcctcg ccaagctcgc
      301 cggcggcgtc gcggtgatcc gcgtcggcgg cgcgaccgag gtcgaggtca aggagaagaa
      361 ggatcgcgtg gacgacgccc tcaacgccac ccgcgcggcg gtcgaggaag gcatcgttcc
      421 cggcggcggc gtggcgctgc tgcgcgccaa gcaggcgatc aaccagacga agaacgagaa
      481 ctcggacatc caggccggct tcaacatcgt gctcaaggcg ctcgaggctc cgatccgcca
      541 gatcgccgag aacgccggcg tcgagggctc gatcgtggtc ggccggatca acgacaacaa
      601 gtcgcagaca ttcggcttca acgcgcagac cgaggagtac gtggacatgc tgtcggccgg
      661 gatcgtcgat cccgccaagg tggtgcgcgc cgccctccag gacgccgcgt cgatcgccgg
      721 cctgctcatc accaccgagg ccatggtcgc cgaggccccc aagaaggaga gcgctccggc
      781 gatgccgggc ggcggcggca tgggcggcat ggactactaa gccccactcc tcgacgcaca
      841 acgggaaggg ccggctcaac gccggccctt ttcgttttgg ggcgcgcgct tgcttgccgg
      901 gtcgagcgcg cgtggtaaga ggcgccgatg tccagcaaga ccgacaacaa gctcaaagcg
      961 cggctgccgc gcgggttcgc ggaccgcggc gcgggtgatc tcgccgcgac ggagcgcatg
     1021 ctcgcggcga tccgcgagac ctacgagctg tacggcttcg aggcgctcga gacgccgttc
     1081 gtcgagtaca ccgacgcgct cgggaaattc ctgcccgacc aggaccggcc gaacgagggc
     1141 gtgttctcgt tccaggacga cgacgagcag tggctctcgc tgcgctacga cctcaccgcg
     1201 ccgctcgcgc gccacgtcgc cgagaacttc gatgcgctgc cgaagccgta ccgcagctat
     1261 cgcgccggct tcgtgttccg caacgagaag cccgggccgg ggcgcttccg ccagttcatg
     1321 cagttcgacg ccgacacggt cggcgcatcg tccgtcgcgg ccgacgccga gatctgcatg
     1381 atggcggccg acaccctcga gcgcgtcggc atcgcccgcg gcgactacgt catcaaggtc
     1441 aacaaccgca aggtcctcga cggcgtcatg gaggcgatcg gcctcagcgg ggacgacaag
     1501 gccgggcagc ggctcacggt cttgcgcgcc atcgacaagc tcgatcggct cggcgtcgac
     1561 ggcgtgcgcc agctcctcgg ggcagggcgc aaggacgaga gcggcgatta cacgaagggc
     1621 gccgggctcg ccgacgagca gatcgaccgc gtgcagaagt acttctcgta ccaggtgaag
     1681 cccagcaccg atcaggaccg cgtcgacttc tgggaccgct tcttcgtcga ctggtccgac
     1741 gtcgtcggcg actccgagcg cgggcgcgag ggcatcgccg agctgcacgc catcatgcgc
     1801 ctgtgcagcg cggccggcta cggcaacgac cgcgtccgcg ccgacccctc cgtcgtgcgc
     1861 ggcctcgagt attacacggg tcccgtctac gaggcggagc tgaccttcga ggtgacgaac
     1921 gacgacggcc aggcggtgcg cttcggctcc gtcgccggcg gcgggcgcta cgacggcctc
     1981 gtcggacgct tccgttccga gccggtgccg gcgacggggt tttccatcgg cgtgtcgcgg
     2041 ctgttcgcag ccctgaaggc cgtgggttcg ccgctgctcg ccggcggcaa ggcgctgccg
     2101 ctcatcgtcg tcaccgtcat ggatcgcgag cgcttcgccg actaccagcg catggtctcg
     2161 gagcttcgcg gcttacgcga cgccgacggc gcgccgctgg tgcgcgccga gatgtatctc
     2221 ggcgacgcgc gcttcaatgc gcagatgaaa tacgccgaca agcgcggcgc cgtctgcgtc
     2281 gtcatccaag gctccgacga gcacgcccgc ggcgaagttc a
//
LOCUS       DASQWN010000064         3770 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1401672, whole genome shotgun sequence.
ACCESSION   DASQWN010000064 DASQWN010000000
VERSION     DASQWN010000064.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 3770)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3770)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3770
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1401672"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..113)
                     /gene="rpsL"
                     /locus_tag="VE686_01215"
     CDS             complement(<1..113)
                     /gene="rpsL"
                     /locus_tag="VE686_01215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020185797.1"
                     /note="interacts with and stabilizes bases of the 16S rRNA
                     that are involved in tRNA selection in the A site and with
                     the mRNA backbone; located at the interface of the 30S and
                     50S subunits, it traverses the body of the 30S subunit
                     contacting proteins on the other side; mutations in the
                     S12 gene confer streptomycin resistance; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S12"
                     /protein_id="HYY83100.1"
                     /translation="MPTISQLIRKPRTAQKSRNKVPALEACPQKRGVCTRV"
     gene            complement(549..>3770)
                     /locus_tag="VE686_01220"
     CDS             complement(549..>3770)
                     /locus_tag="VE686_01220"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012255172.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000428 - DNA-directed RNA polymerase
                     complex [Evidence IEA];
                     GO_function: GO:0003899 - DNA-directed 5'-3' RNA
                     polymerase activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit beta'"
                     /protein_id="HYY83101.1"
                     /translation="ANKRPLKSLADMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPELK
                     LHQCGLPKKMALELFKPFIYAKLDARGLSATVKQAKKLVEKEKPEVWDILDEVIREHP
                     VLLNRAPTLHRLGIQAFEPILIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQL
                     EARVLMMSTNNILHPANGQPIIVPSQDIVLGLYYLSIVSDGEPGQGKAFSDIGELEHA
                     LAEKVITLHTKIRYRWTGMGPDGKRLTKIYDTTAGRVMLSRVLPDHPAVSFDVVNKLM
                     TKKEISNMIDTVYRNCGQKESVIFCDRIMALGFYNAFKAGISFGKDDMVVPENKWSIV
                     DETRTLVKDYEQQYQDGLITQGEKYNKVVDAWAKCSDRLAAEMMNRISSVKKDDAGRD
                     LPVNSIYMMSHSGARGSPAQMKQLAAMRGLMAKPSGEIIESPIISNFKEGLDVLEYFN
                     STHGARKGLADTALKTANSGYLTRRLVDVAQDAVIREVDCGTEKGIKMRAIIDAGQVV
                     ASLATRILGRSTAEDLVALDGKVIVPAGTMIEESHIEAITAAGIQEVKIRSVLVCASK
                     NGVCATCYGRDLARGTPVNQGEAVGVIAAQSIGEPGTQLTMRTFHIGGAAQIADQSFI
                     ESNFEGTVAMRNRNVARNSDGELIVMGRNVAVVIVGPDGAERAVHRLQYGARLKIDEG
                     DAIKRGQRIAEWDPYSRPILTEIEGKVAYEDLVDGQSMIETTDESTGIAKRVVIDWRG
                     SSRTADLKPAMVVHDKSGKVGKLPRGSDARYLLPVDAIVNVDPGAKVKAGDVLARVST
                     ESAKTRDITGGLPRVAELFEARRPKDAAIIAEKSGTILFGRDYKNKRRLTLTPHDGSE
                     AVEYLIPKGKHIHLQDGDVVELGDFIVDGNPAPHDILAIKGVEELAAYLVNEIQEVYR
                     LQGVNINDKHIEVIVRQMLQKAEITDGGDSELLAGEQLDRLELEEINERLEAEGKKPA
                     VGVPVLLGITKASLQTRSFISAASFQETTRVLTEASVNGKVDTLEGLKENVIVGSLIP
                     AGTGAMISQITAVASRRDDLILQQRQTEAQQAQPVSELPSAAE"
BASE COUNT          560 a         1255 c         1244 g          711 t
ORIGIN      
        1 tagacgcgcg tgcagacgcc ccgcttctgc gggcacgcct cgagcgcggg aaccttgttc
       61 cggctcttct gcgccgtccg cggcttgcgg atcagctggc tgatcgtcgg catcctgtgc
      121 cctcttgcat ggccgcatcg cggccgcttc actcttcaca cgtcggttga gcactgcgcc
      181 gcaacgcttt gccaggaccc gtaagtcgca aacgcaaaac gaagccgcgc catgggccct
      241 taggacctgt ggcgcgccgc gacgcagagg accacgatgg cgagccaccg cggtcatgac
      301 caaggctgac gatgtgtcag tcggttgagg tcggcagcgt ctaggcgggg ttgatcgaag
      361 ccagttggaa acagcttcga ccggcgctca cctacggcct gccggaaagt ccgcgcgttc
      421 tataatccgg gtccgccgaa gtcaaccggg aactggagga atctcagtgg aatcccacgt
      481 gggacggccc cctgaaacga aaggccgccc gaaggcggcc ttccgcagtt ttcgtgcgcc
      541 tagggggcct attcggccgc cgacggcagc tcgcttacgg gctgagcctg ctgcgcctcg
      601 gtctgcctct gctgcaggat gaggtcgtcg cggcgactcg ccacggcggt gatctgcgag
      661 atcatggcgc cggtgcccgc cgggatgagc gagccgacga tcacgttctc cttcagcccc
      721 tcgagggtgt ccaccttccc gttgaccgac gcttccgtga ggacgcgcgt ggtctcctgg
      781 aacgacgccg ccgagatgaa cgaccgcgtc tgcagcgaag ccttggtgat gccgagcagc
      841 accgggacgc cgaccgcggg cttcttgccc tcggcctcca ggcgctcgtt gatctcctcg
      901 agctccaggc ggtcgagctg ctcgccggcg agcagctccg agtcgccccc gtcggtgatc
      961 tcggccttct gcagcatctg gcggacaatc acctcgatgt gcttgtcgtt gatgttgact
     1021 ccctgcagcc ggtagacctc ctggatctcg ttgacgaggt aggcggcaag ctcctccacg
     1081 cccttgatcg ccaggatgtc gtgcggcgcc gggttgccgt cgacgatgaa gtccccaagc
     1141 tcgaccacgt ccccatcctg caagtggatg tgcttgccct tggggatcag gtactcgacg
     1201 gcctccgacc cgtcgtgcgg cgtcagcgtc aggcggcgct tgttcttgta gtcgcgcccg
     1261 aacaggatgg tgcccgactt ctcggcgatg atcgccgcgt ccttcgggcg acgcgcctcg
     1321 aacagctccg ccacccgcgg cagaccgccg gtgatgtcgc gggtcttggc actttcggtc
     1381 gagacgcggg cgagcacgtc gccggccttg accttggccc caggatccac gttcacgatc
     1441 gcatcgaccg gcaggaggta gcgggcgtcg ctgccgcgcg gcagcttgcc gaccttgccc
     1501 gacttgtcgt gcacgaccat cgccggcttg aggtcggccg tgcgggacga cccgcgccag
     1561 tcgatgacga ctcgcttggc gatgccggtc gactcgtcgg tcgtctcgat catggactgc
     1621 ccgtcgacca ggtcctcgta ggccaccttg ccctcgatct cggtgaggat cgggcggctg
     1681 taggggtccc actcggcaat gcgctgaccg cgcttgatcg cgtcgccctc gtcgatcttc
     1741 aggcgcgcgc cgtactggag gcgatgcacg gcgcgctcgg ccccgtcggg accgacgatc
     1801 acgaccgcca cgttgcggcc catgacgatg agctccccgt cggagttccg cgccacgttc
     1861 cggttgcgca tggcaaccgt gccctcgaag ttcgactcga tgaaggactg gtcggcgatc
     1921 tgcgccgcgc cgccgatgtg gaaggtccgc atcgtcagct gggtgccggg ctcgccgatc
     1981 gactgcgccg cgatgacccc gaccgcctcg ccctggttga ccggcgtgcc gcgcgcgaga
     2041 tcgcgcccgt agcaggtcgc gcagacgccg ttcttcgacg cgcacaccag caccgagcgg
     2101 atcttcacct cctggatgcc ggcggcggtg atcgcctcga tgtggctttc ctcgatcatc
     2161 gtgcctgcgg gcacgatgac cttgccgtcc agagcgacca ggtcctcggc cgtcgagcgg
     2221 cccaggatgc gggttgccag ggacgcgacc acctggccgg cgtcgatgat ggcacgcatc
     2281 ttgatgccct tctcggtacc gcagtcgacc tcgcggatga ctgcgtcctg ggccacgtcg
     2341 acgagacggc gggtcaggta gcccgagttt gccgtcttga gcgccgtgtc ggcgaggccc
     2401 ttgcgggcgc cgtgggtcga gttgaagtac tcgagcacgt cgaggccttc cttgaagttc
     2461 gagatgatcg ggctctcgat gatctcaccg gacggcttgg ccatgaggcc gcgcatcgcc
     2521 gcgagctgct tcatctgcgc cggcgagccg cgcgcgcccg agtggctcat catgtagatc
     2581 gagttcaccg gcaagtcgcg gccggcgtcg tccttcttca ccgacgagat gcggttcatc
     2641 atctcggccg cgagacgatc cgagcacttg gcccaggcgt cgacgacctt gttgtacttc
     2701 tcgccctggg tgatcaggcc gtcctggtac tgctgctcgt agtccttcac gagcgtgcgc
     2761 gtctcatcga cgatcgacca cttgttctcc ggcaccacca tgtcgtcctt gccgaacgag
     2821 atgccggcct tgaacgcgtt gtagaagccg agcgccatga tgcgatcgca gaagatcacc
     2881 gactccttct gaccgcagtt gcggtagacg gtgtcgatca tgttcgagat ctccttcttc
     2941 gtcatgagct tgttcacgac gtcgaaggac acggccgggt ggtccggcag cacgcgcgag
     3001 agcatcacgc ggcccgcggt ggtgtcgtag atcttggtca ggcgcttgcc gtccgggccc
     3061 atgccggtcc agcggtacct gatcttggtg tgcagcgtga tgaccttctc ggcgagcgca
     3121 tgctcgagct cgccgatgtc ggagaacgcc ttgccctgac ccggctcacc gtccgagacg
     3181 atggacaggt agtagaggcc gagcacgatg tcctgcgacg gcacgatgat gggctggccg
     3241 ttcgccggat gcaggatgtt gttcgtgctc atcatgagca cgcgcgcctc gagctgcgcc
     3301 tcgagcgaga ggggcacgtg gacggccatc tggtcgccgt cgaagtccgc gttgaacgcg
     3361 gcgcagacga gcgggtgcag ctggatcgcc ttgccctcga tgaggatcgg ctcgaacgcc
     3421 tggatgccca ggcggtgcag cgtcggggcg cggttgagca gcaccggatg ctcgcggatc
     3481 acctcgtcga ggatgtccca aacctccggc ttctccttct cgacgagctt cttcgcctgc
     3541 ttgacggtgg cggacaggcc gcgggcgtcg agcttggcgt agatgaacgg cttgaagagc
     3601 tcgagcgcca tcttcttcgg caacccgcac tggtgcagct tgagctccgg accgacgacg
     3661 atgaccgagc ggcccgagta gtcgacgcgc ttgccgagca ggttctggcg gaagcgcccc
     3721 tgcttgcctt tcagcatgtc ggcgagcgac ttcagcgggc gcttgttggc
//
LOCUS       DASQWN010000065         5391 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_607706, whole genome shotgun sequence.
ACCESSION   DASQWN010000065 DASQWN010000000
VERSION     DASQWN010000065.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 5391)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5391)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5391
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_607706"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1691)
                     /locus_tag="VE686_01225"
     CDS             complement(<1..1691)
                     /locus_tag="VE686_01225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012605531.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4Fe-4S binding protein"
                     /protein_id="HYY83102.1"
                     /translation="MPLDGAALAQGCGGTLQTATQLCGRELDRFKAALATGAPITVGC
                     THQAPLFSEVAEEHGAHDRVAYAGLREAAGWSDEARAAGPKMAALLAAAAEPTPAIAL
                     VSFESQGVALVYGRDEAAIEAGRRLADHLDVTVLLTRPGDVTPPDAAAFPVLKGTIAG
                     ATGHLGAFDLRIDDYALPAPSSRRSLIFGDARNGATSRCDLIVDLSGGMPLFPAHEVR
                     SGYLRADPRDAAAVERVLADAAHLVGTFDKPKFIDFNEGLCAHSRSRITGCTRCLEVC
                     PTGAISPAGNHVAIDPYVCAGCGSCAAVCPTGAASYALPTADALMRKLRTLVRTYRDA
                     GGRAPVVLFHDGDHGEPLIAALARFGDGLPANVLPVRVNEVTQIGPETLAGVFAYGAV
                     GARLLARGKPKHDISGLHRTVATANLVLGELGYGRCVVALIETDDPDALRAALDRAPL
                     GTPAPRPAAFVPQGAKRNVLELAFRELRLAAPTPVDVVALPAGAPFGALVYREDACTL
                     CLACVGACPTNALSDNPDRPMLRFTEALCVQCGLCAETCPEDAIVGLQPRLDFAA"
     gene            1901..2608
                     /locus_tag="VE686_01230"
     CDS             1901..2608
                     /locus_tag="VE686_01230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012332890.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0036211 - protein modification process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="biotin/lipoate--protein ligase family protein"
                     /protein_id="HYY83103.1"
                     /translation="MLPPAYRLVTLREAGDAFAHACAVAEVAGAGTFVWARRFDLLDF
                     AVVLEPEEPLASARRAFLVAMVALADAVGVHGSAEMSATFAWPDTLLYDGARLGGGRL
                     GWPDGCAESETPPWLVFGAMLIASKHGAGDPGLTPDSTSLEDERFEADAGARIAESFA
                     GHLMAAFDALQDEGFGPVAAGYAARLACAPDERAVIERNGDLLVHGRDGSQRRIALAA
                     ALREPSWLDPATGTPRL"
     gene            2612..3172
                     /locus_tag="VE686_01235"
     CDS             2612..3172
                     /locus_tag="VE686_01235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009735492.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6505 family protein"
                     /protein_id="HYY83104.1"
                     /translation="MTLKLMRVLRLDPSDTFVFPRAAEPGEWAVAGSFLFADADPAVL
                     EPKQRAAFRAGFLGARSFAFSTLVVIAQASEAERDGAVEDLARNLVERLGAPDLDTAR
                     AAAEEEVAFAAALCEHPVDTVLALHRTREGGEVRERFRTLRPRDVPTVGADARHLYAR
                     AFEFVESDEDEPAEAVDLVGLTERDR"
     gene            3169..4182
                     /locus_tag="VE686_01240"
     CDS             3169..4182
                     /locus_tag="VE686_01240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019197642.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6352 family protein"
                     /protein_id="HYY83105.1"
                     /translation="MSREFWVSSGHHLTHRAPGGGLVVTDELILAYLARPELVPPEEA
                     CDAERALHASLLAAPRRPVPAAEIAAMADADARENWELMLGFRDRLVAARTVEAAYVD
                     LVRAGAPGMAPVFLNQLVHLILRNALDACEDPYVLRAAEMFFRPQRVSFQDGAALLAD
                     AEVIEAHEGGAGRSPLVAMLGKEPEASLDVLDDANAWTYWSRSDAFTMALNVGSNPRS
                     RDGLARVIEVWVRHLLNEDVAVEPAAAIEDRDWRWFVGLDAEATRIGNALWGGESVEP
                     DVQARILALFRLRFADASRIDARAAGHPVYLILAMTPDRMLRLKPQNLIVGLPLAAGA
                     RAA"
     gene            4179..4691
                     /locus_tag="VE686_01245"
     CDS             4179..4691
                     /locus_tag="VE686_01245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012332893.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3305 domain-containing protein"
                     /protein_id="HYY83106.1"
                     /translation="MTTVESHFSVGVVVAKRKLKGPWAEHAWLPRAVLPAVPAADPWA
                     SLGADGDDELFYAGPAELWLERGATPHYGDNLTAAQPSVWVSLRPVGGDEVEVGKATV
                     DPYEGESMAEAIGEVVEALPMPPEIQAKVAAFFEAFHVERPFIKRQRDRADPDGMGRR
                     RRMGPGDDEP"
     gene            4688..5320
                     /locus_tag="VE686_01250"
     CDS             4688..5320
                     /locus_tag="VE686_01250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009735495.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3306 domain-containing protein"
                     /protein_id="HYY83107.1"
                     /translation="MSGEFLSRWSRRKLEVKQAEETAPAEAPEGGPDAAPGAEELSPE
                     ELSPEELAALPPVESLTAQSDIAAFLRKGVPQALRNAALRRAWALDPDIRDYVGDARD
                     YAYDWNVPGGVPGTGPLDAGTDLARMVEDVFGRPHEPETKEQAAPAVADETVVDPPAA
                     VTLAPTDSAAVQAPPREEGSGESPVVRSSSTGGHERPAATKKRHGGAKPA"
BASE COUNT          738 a         1932 c         1977 g          744 t
ORIGIN      
        1 caggccgcga aatcgagacg gggctggagc cccacgatcg catcttccgg gcaggtctcg
       61 gcgcacaggc cgcactgcac gcacaaggct tccgtgaacc ggagcatcgg ccgatcggga
      121 ttgtcggaga gcgcgttggt cgggcaggcg ccgacgcagg caaggcaaag ggtgcaggca
      181 tcctcgcgat agacgagggc gccgaagggt gcgcctgcag gcagggcgac cacgtcgacc
      241 ggcgtcggtg cggcgaggcg gagctcgcgg aaggcgagct cgagcacgtt gcgcttcgcc
      301 ccttgcggga cgaaggcggc gggccgcggg gccggggtgc cgaggggggc gcggtcgagt
      361 gccgcgcgca aggcgtcggg atcgtcggtc tcgatgagcg caaccacgca tcggccgtat
      421 ccgagctcgc cgaggacgag gttggcggtg gcgacggtgc ggtggaggcc cgagatgtcg
      481 tgcttcggct tcccccgcgc gagcaaccgc gcgccgacgg cgccataggc gaagaccccg
      541 gcgagggtct cgggcccgat ctgggtcacc tcgttcacgc ggaccgggag cacgttcgca
      601 ggcaggccgt cgccgaagcg ggcaagcgcg gcgatgagcg gctcgccgtg gtcgccgtcg
      661 tgaaacagca cgacgggcgc gcggcctccg gcgtcgcgat aggtgcgcac cagggtgcgc
      721 agcttgcgca tgagggcgtc agcagtcggg agggcgtagg aggcggcgcc cgtagggcac
      781 acggcggcgc agctgccgca gccggcgcag acataggggt cgatggcgac gtggttgccg
      841 gcgggcgaga tggcgcccgt ggggcagacc tccaggcagc gcgtgcagcc ggtgatgcgc
      901 gaccgcgagt gcgcgcagag cccttcgttg aagtcgatga acttgggctt gtcgaaggtg
      961 ccgacgaggt gggccgcgtc ggcaagcacg cgctcgaccg ccgcggcgtc gcgcggatcc
     1021 gcccgcaggt agccggagcg cacctcgtgc gccgggaaca ggggcatgcc gcccgagaga
     1081 tcgacgatga ggtcgcagcg cgaggtggcg ccgttgcggg cgtcgccgaa gatcaggctc
     1141 cgccgcgacg acggtgccgg cagggcgtag tcgtcgatgc gcaagtcgaa ggcgccgagg
     1201 tgccccgtcg ctcccgcgat cgtgcccttc agcaccggga acgcggcggc gtccggcggc
     1261 gtgacgtcgc cgggccgggt caggaggacc gtcacgtcga ggtggtcggc gagccggcgc
     1321 ccggcttcga tcgccgcctc gtcacgcccg tacacgaggg cgacgccctg gctctcgaag
     1381 gagacgagcg cgatcgcagg cgtcggctcg gccgcggcgg ccaggagagc cgccatcttg
     1441 gggcccgccg cgcgcgcctc gtccgaccac ccggcggcct cgcgcaggcc agcgtaggcc
     1501 acgcgatcat gcgcgccgtg ctcttcggcg acttcggaaa agagaggcgc ctggtgcgtg
     1561 cagccgacgg tgatcggcgc ccccgtggcg agggcggcct tgaagcgatc gagctcgcgc
     1621 ccgcacagct gcgtcgccgt ctgcagcgtt ccgccgcagc cttgtgcgag cgcggccccg
     1681 tcgaggggca tggtgtcctc gcacgagcag gcgatgacca cgcgatccga aacctgcgcc
     1741 accgttgaaa atccgtccct cgccggaggc gctttgccgc ctctcgcgct tgtgtgtcag
     1801 gagcttatac tggaatcgtt gtaaacggcg accccgactc cgggtcgcag gagagcttcc
     1861 cccgtcgatg cccgtcctgg cgccacctgc tccgcctctc atgctcccgc ccgcgtaccg
     1921 cctcgtcacc ttgcgcgagg cgggggatgc cttcgcgcat gcctgcgccg tggccgaggt
     1981 cgccggtgca ggaaccttcg tgtgggcgcg ccgcttcgac ctcctcgact tcgccgtcgt
     2041 gctcgagccg gaggagccgc ttgcgagcgc ccggcgcgcc ttcctggtcg ccatggtggc
     2101 gcttgccgac gcggtcggcg tgcacgggag cgccgagatg tcggcgacct tcgcctggcc
     2161 cgacacgctc ctctacgacg gtgcccggct cgggggaggg cgcctcggct ggcccgatgg
     2221 ctgcgccgaa agcgagacgc caccgtggct cgtcttcggc gccatgctga tcgcctcgaa
     2281 gcacggtgcc ggcgatcctg ggctcacgcc ggactcgacc tcgctcgagg atgagcgctt
     2341 cgaggccgac gccggcgccc gcatcgcgga gagcttcgca ggccatctca tggcggcttt
     2401 cgacgccttg caggacgagg gcttcggccc cgttgcggcc ggctatgccg cgcgcctcgc
     2461 ctgcgcaccc gacgagcgtg ccgtgatcga gcggaacggg gatctgcttg tccatggccg
     2521 cgatgggtca cagcgtcgga tcgcgctcgc ggctgcgctg cgcgagccgt cgtggctcga
     2581 tcccgccacc ggaacgccgc ggctctaagc gatgacgctg aagctcatgc gcgtcctgcg
     2641 cctcgatccc tccgatacct tcgtattccc gcgcgcggcg gagcccggcg aatgggcggt
     2701 cgccggctcc ttcctgttcg ccgacgccga cccggcagtc ctcgaaccca agcagcgcgc
     2761 cgctttccgc gccggcttcc tcggcgcacg ctccttcgcc ttctcgaccc tcgtggtcat
     2821 cgcgcaggcg agcgaggccg agcgcgacgg cgcggtcgag gaccttgccc gcaacctggt
     2881 ggagcggctc ggcgcgccgg acctcgacac ggcgcgggcc gccgccgaag aggaggtcgc
     2941 cttcgcggcg gcgctgtgcg agcacccggt cgacacggtg ctcgcgctgc acaggacgcg
     3001 cgaaggcggc gaggtgcgcg agcgcttccg caccttgagg ccgcgcgacg ttccaaccgt
     3061 cggggccgac gcccgccacc tctacgcgcg cgccttcgag ttcgtggaga gcgacgagga
     3121 cgagcccgcc gaagcggtcg accttgtcgg cctcacggag cgtgaccggt gagccgcgaa
     3181 ttctgggtct cctccggcca tcacctgaca caccgcgcgc cgggcggcgg cctcgtcgtc
     3241 acggacgagc tgatcctcgc ctatctcgcc cgcccggagc tcgtgccgcc ggaggaggct
     3301 tgcgacgccg agcgcgcgct gcacgcgagc ctcctcgccg ccccgcgccg gcccgtgccc
     3361 gctgccgaga tcgccgccat ggccgatgcg gacgcccgcg agaactggga gctcatgctt
     3421 ggcttccgcg accgcctcgt cgcggcgcgc accgtcgagg cggcctacgt cgacctcgtc
     3481 cgcgccggag cccccggcat ggcgccggtg ttcctgaacc agctcgtgca tctgatcctg
     3541 cgcaacgccc tcgatgcttg cgaggacccc tatgtgctgc gcgcggcgga gatgttcttc
     3601 cggccgcagc gggtgtcgtt ccaggacggg gcggcgctcc tggctgacgc cgaggtcatc
     3661 gaggcgcacg agggcggcgc cggccgctcg cccctcgtcg ccatgctcgg caaggagccc
     3721 gaggcgtcgc tcgacgttct cgacgacgcc aatgcctgga cctactggag ccgctccgac
     3781 gccttcacca tggccctgaa cgtcggctcc aacccgcgca gccgggacgg gctcgcccgg
     3841 gtcatcgagg tctgggtccg ccacctcctc aacgaggacg tcgccgtcga gcccgccgcc
     3901 gccatcgagg atcgcgactg gcgctggttc gtcgggctcg atgccgaggc gacccgcatc
     3961 ggcaacgcgc tctggggcgg cgagtccgtc gagccggacg tgcaggcaag gatcctcgcc
     4021 ctgttccgcc tccgcttcgc cgacgcgagc cgcatcgacg cgcgcgccgc cggccatccc
     4081 gtctatctca tcctcgccat gaccccggac cgcatgctgc gcctcaagcc ccagaacctc
     4141 atcgtcgggc tgccgctcgc cgctggagcg cgtgcggcat gacgactgtc gagagccatt
     4201 tctcggtcgg cgtcgtggtg gcgaagcgca agctgaaggg gccttgggcc gagcacgcgt
     4261 ggctgccgcg cgcggtgctt ccggccgtgc ctgcggccga tccttgggcg agcctcggcg
     4321 cagacggcga tgacgagctg ttctacgccg gccccgcgga gctctggctc gagcgcggcg
     4381 cgaccccgca ctacggcgac aacctcacgg cggcgcagcc gtccgtctgg gtgtcgctgc
     4441 ggccggtggg cggcgacgaa gtcgaggtcg gcaaggcaac ggtcgatccc tacgagggcg
     4501 agtccatggc ggaagcgatc ggcgaggtcg tcgaggcgtt gccgatgccg cccgaaatcc
     4561 aggccaaggt ggcggcgttc ttcgaggcgt tccacgtcga gcgtccgttc atcaagcgcc
     4621 agcgcgaccg cgccgatccc gacgggatgg gccggcgccg gcgcatgggc ccgggggacg
     4681 acgagccatg agcggcgagt tcctgtcgcg ctggtcgcgg cgcaagctcg aggtcaagca
     4741 ggccgaggag accgcgccgg ccgaggcgcc cgagggtggc cccgacgcgg cgcctggcgc
     4801 cgaggagctt tcgcccgaag agctttcgcc cgaggagctg gcggcgctgc cgccggtcga
     4861 gagcctcacg gcccagagcg acatcgctgc gttcctgcgc aagggcgtgc cgcaggcgct
     4921 ccgtaacgcc gcgctccggc gcgcctgggc gctcgacccg gacatccgcg actacgtcgg
     4981 cgatgcccgc gactatgcct acgactggaa cgtgccgggc ggtgttcccg ggacggggcc
     5041 cctcgacgcc ggcaccgatc tcgcgcgcat ggtcgaggac gtgttcggcc ggccgcacga
     5101 gcccgagacc aaggagcagg ccgcgccggc ggtcgccgac gagacggtcg tcgaccctcc
     5161 cgctgcggtg accctcgccc cgaccgactc ggccgcagtt caagcgccgc cgcgcgagga
     5221 gggcagcggc gagtcgccgg tggtccggag ctcctcaacc ggcggtcacg agaggccagc
     5281 tgcaaccaaa aagcggcacg gcggggctaa accggcgtga aaactatcaa atgtgatctt
     5341 gcggccaagc cgcgcgcccc tatgatgccc aatgaataga catgtggccc g
//
LOCUS       DASQWN010000066         4601 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_303873, whole genome shotgun sequence.
ACCESSION   DASQWN010000066 DASQWN010000000
VERSION     DASQWN010000066.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 4601)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4601)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4601
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_303873"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..258
                     /locus_tag="VE686_01255"
     CDS             <1..258
                     /locus_tag="VE686_01255"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY83108.1"
                     /translation="TPPSAPPASDRGALRALFATAISPSGATDSRKPVPTARARPQPI
                     TTASLVVATGPVLSLGFSASPTDLSTASFTGPAVKPLPVVR"
     gene            complement(471..3548)
                     /locus_tag="VE686_01260"
     CDS             complement(471..3548)
                     /locus_tag="VE686_01260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009341309.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-linked oxidase C-terminal domain-containing
                     protein"
                     /protein_id="HYY83109.1"
                     /translation="MQTKSGGTGASVLPGLERRLRRELTGDVLFNRFDRGRYATDASF
                     YQIVPLGVVVPRTVEEALAAIAIARDEGVTVLPRGGGTSQCGQTVNASLVLDTSKHLN
                     RILDLDVEARTCVVEPGIVLDELNRKLKPHGLWFPVDVSTASRATIGGMAGNNSCGGR
                     SLRYGTMRDNTLSLEAATADGTLMRFGPVPRDLAGLNVPGPGAELFRDLLNLGEREAA
                     EVAARFPKVQRRVGGYNLDALTPNGPTNNMAHVLVGSEGTLAFTTRAELKLSPVIRTR
                     ALGVCHFGSFYEAMDAAQHLVKLKPIAVELVDSTMIALGRDIAMFRPTVDAVVRGNPD
                     ALLLVEFAEDEGENRRRLAQLSELMGDLGFGWDREPRRWGGVVEVVEPALQSAIAEFR
                     AAGLNVMMSMKEAGKPVSFVEDCAVPLPHLADYTARLTAVFEKHGTRPTFYAHASEGC
                     LHVRPVLNLRLEKDVHAMRAIAEEAFAMVREYKGSHSGEHGDGIVRSEFHEEMFGSRL
                     VRAFEEVKDRFDPKALFNPGKIVRAPRMDDRSLFRYPPGYAVPERTMALSWAGYTGAG
                     GGFQGAVEMCNNNGACRSLSGGVMCPSYRVTLNEKDLTRGRANSLRLAISGQLGPDAF
                     TSEEMFDTLKLCVSCKGCRRECPTGVDIAKMKIEVLAARAQKHGLSLRDRLVAYLPRY
                     AGFAAKLSWLMNLRNGSPLLRRTLERLGGISAQRDLPVWRRDPFAPTQEAYGPEGGRE
                     VVLFADTFNRAFERENLDAALTVLVAAGYRVHLPRPADGSRRPPCCGRTFLASGLVDE
                     ARAELGRLVATYAPYARRGVPIVGLEPSCLLTLRDELLSLAEKPPKAAQDGVSGGLAT
                     SLRQRIPSLRQAMAEPGSDGGDARAVAAHALLFEEFLAREAQSGRLALPLKPVAEKAL
                     VHGHCHQKAFDAFKPVVEVLKLVPGLQVETVESSCCGMAGAFGYGADTYEVSIAMGEL
                     SLLPAVRKADAGTVIVADGTSCRHQIADGTGRNAVHVARVLADSLRPAAARQG"
     gene            3633..>4601
                     /locus_tag="VE686_01265"
     CDS             3633..>4601
                     /locus_tag="VE686_01265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018387201.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class V-fold PLP-dependent
                     enzyme"
                     /protein_id="HYY83110.1"
                     /translation="MADNTARVAGRHFLQIPGPSPVPDRILRAMDMPVIDHRGPEFQR
                     LGKRVLSGIKTIFKTSGPVVIYPASGTGAWEAALVNALSPGDKVLMAETGHFASLWQT
                     MAKRLGLEPELIPTDWRTGAPADAIEARLKEDKEHAIKAVCVVHNETSTGATSRIDEV
                     RRAIDNAAHPALLMVDTISGLASIDYRHDEWGVDVTVSGSQKGLMLPPGLSFNALGEK
                     ALAAAKKSRFPKSFWGWEEMVAINATGFFPYTPATNMLYALAEAIDMLHEEGLENVFA
                     RHDRHAEATRRAVRTWGLDILCKDPKYYSSVLTAVVMPEGHNADEFR"
BASE COUNT          690 a         1627 c         1633 g          651 t
ORIGIN      
        1 acgccgccct cggcgcctcc ggcaagcgac cgcggcgcct tgcgggcgct gttcgccacg
       61 gccatcagcc cctccggcgc gaccgacagc cgcaagccgg tgccgaccgc ccgcgccaga
      121 ccccagccga tcacgacggc gagcctcgtc gtcgccaccg gcccggtcct cagcctcggc
      181 ttctcggcca gcccgaccga tctctcgacc gcgtccttca cgggccccgc cgtgaagccc
      241 ctgcccgtcg tacgctagaa gatcgaagcg ctcgaatcct cctctccccg cttgcgggga
      301 gagggctccg gccgcggatt ggcggacgga gcaagcccgc agggcggggg tgaggggcct
      361 gtcgcccgct gagcgcaacg ccgaccagcc cctcaccctc gcttcgctcg gctcgcaccc
      421 ggcaaggggt gcgagcccct ctccccgcga gcggggagag gtggggcgcg tcatccttgc
      481 cgggcagcag caggccgcag gctgtcggcg aggacccttg cgacatggac cgcattgcgg
      541 cccgtgccgt ccgcgatctg gtggcggcag gaggtgccgt ccgcgacgat gaccgtgccg
      601 gcatcggcct tgcgcaccgc cggcaggagc gagagctcgc ccatggcgat cgagacctcg
      661 taggtgtcgg cgccgtagcc gaaggcgccc gccatgccgc agcagctcga ctcgacggtc
      721 tcgacctgaa gcccggggac gagcttcagc acctcgacga cgggcttgaa ggcgtcgaag
      781 gccttctggt ggcagtggcc gtgcacgagc gccttctcgg cgacgggctt cagcggcagg
      841 gcgagccgcc cggattgcgc ctcccgggcc aggaactcct cgaagaggag cgcgtgggcc
      901 gcgacggccc gggcgtcgcc gccatcgctg cccggctccg ccatagcttg tcgtaagctt
      961 ggaattcgtt gtcgcaagct ggttgcaagc ccgcctgaaa ccccgtcttg cgccgctttg
     1021 ggtggcttct cagcaagcga caacagctcg tcccggagcg tcagcaggca gctcggctcg
     1081 agaccgacga tgggcacgcc gcgccgcgca tacggcgcgt aggtcgccac gagccgcccg
     1141 agctcggccc gggcctcgtc aacgaggccc gaggcgagga aggtgcggcc gcagcacggc
     1201 ggccggcggc tcccgtcggc gggcctcggc aggtgcacgc gatagcccgc tgccaccagc
     1261 accgtgaggg cagcgtcgag gttctcgcgt tcgaaggcgc ggttgaaggt gtcggcgaag
     1321 aggacgacct cgcgcccgcc ttccgggcca tacgcctcct gggtcggggc gaagggatcg
     1381 cggcgccaca ccggcaggtc gcgctgcgcg ctgatgccgc cgaggcgctc gagtgtgcgg
     1441 cgcaggagcg ggctgccgtt gcgcaggttc atgagccagg agagcttcgc ggcgaagccc
     1501 gcatagcggg gcaggtaggc gacgaggcgg tcgcgcaggg agagaccgtg cttctgcgcg
     1561 cgcgcggcga gcacctcgat cttcatcttg gcgatatcga cgcccgtcgg gcactcgcgc
     1621 cggcagccct tgcaggagac gcagagcttg agggtgtcga acatctcctc cgaggtgaag
     1681 gcgtccggcc cgagctggcc cgagatggcg aggcgcagcg aattcgcgcg cccgcgggtg
     1741 aggtccttct cgttgagggt gacgcggtac gaggggcaca tgacgccgcc cgagaggctg
     1801 cggcaggcgc cgttgttgtt gcacatctcg acggcgccct ggaaaccgcc tccggcgccc
     1861 gtgtagccgg cccacgacag cgccatcgtg cgctccggga cggcgtagcc gggcgggtag
     1921 cggaacaggc tgcggtcgtc catgcgcggc gcgcgcacga tcttgcctgg attgaatagc
     1981 gctttcgggt cgaagcggtc cttcacctcc tcgaaggcgc gcacgaggcg ggagccgaac
     2041 atctcctcgt ggaactcgga gcgcacgatg ccgtcgccgt gttcgcccga gtgcgagccc
     2101 ttgtactcgc gcaccatggc gaaggcttcc tcggcgatgg cgcgcatcgc gtgcacgtcc
     2161 ttctcgagcc tgaggttcag gaccgggcgg acgtgcaggc agccctccga ggcgtgggcg
     2221 tagaaggtcg ggcgcgtgcc gtgcttctcg aacaccgccg tcagccgcgc cgtgtagtcg
     2281 gcgaggtggg gcagcggcac ggcgcagtcc tcgacgaagg acacgggctt gcccgcctcc
     2341 ttcatcgaca tcatcacgtt caagcccgcc gcccggaact ccgcaatggc cgactgcagc
     2401 gccggctcga ccacctcgac gacgccgccc cagcggcgcg gctcgcggtc ccagccgaac
     2461 ccgaggtcgc ccatgagctc ggacagctgc gcgaggcggc gccggttctc gccctcgtcc
     2521 tcggcgaact cgacgagcag gagcgcgtcg gggttgccgc gcaccacggc gtcgaccgtc
     2581 ggccggaaca tggcgatgtc gcgcccgagc gcaatcatgg tgctgtcgac gagctcgacc
     2641 gcgatgggct tcagcttcac caggtgctgg gccgcgtcca tggcctcgta gaagctgccg
     2701 aaatgacaga cgccgagcgc ccgggtccgg atcacgggcg agagcttcag ctcggcgcgg
     2761 gtcgtgaagg cgagcgtgcc ctcggagccc acgagcacgt gcgccatgtt gttggtcggc
     2821 ccgttcggcg tcagggcatc gaggttgtag cccccgaccc ggcgctgcac cttcgggaag
     2881 cgcgccgcga cctccgccgc ctcgcgctcg ccgaggttca gcaggtcgcg gaacagctcg
     2941 gcgccggggc ccggcacgtt caggccggcg aggtcgcgcg gcaccgggcc gaagcgcatg
     3001 agggtcccgt ccgccgtcgc tgcctcgagg gacagcgtgt tgtcgcgcat ggtgccgtag
     3061 cgcagtgacc ggccgccgca ggagttgttg ccggccatgc cgccgatggt ggcgcgcgac
     3121 gccgtcgaga cgtcgaccgg gaaccacagg ccatgcggtt tcagcttgcg gttcagctcg
     3181 tcgaggacga tgccgggctc gacgacgcag gtgcgggcct cgacgtcgag gtcgaggatg
     3241 cggttgaggt gcttcgacgt gtcgaggacc agcgacgcat tgacggtctg gccgcactgc
     3301 gatgtgccgc cgccgcgcgg cagcaccgtg accccctcgt cgcgcgcgat cgcgatggcc
     3361 gcgagcgcct cctccacggt gcgcggcacc acgaccccga ggggcacgat ctggtagaac
     3421 gaggcgtccg tcgcgtagcg gccgcggtcg aagcggttga acaggacgtc gccggtgagc
     3481 tcgcgccgga ggcggcgctc gagcccgggc aggacgctcg cgccggtgcc gccgctcttc
     3541 gtttgcatgc tcccgactag cagttcgccc tcgattgggg caatagaccg aggcgagccg
     3601 cgcgttgcgg ccacatcgca cgcgagatcc tgatggccga caacaccgcc cgcgtcgccg
     3661 gacgccattt cctgcagatc cccgggccga gccccgtgcc cgaccgcatc ctgcgggcca
     3721 tggacatgcc ggtgatcgat caccgcggcc ccgagttcca gaggctcggc aagcgcgtgc
     3781 tgtcgggcat caagacgatc ttcaagacct ccggtccggt agtgatctat cccgcgtccg
     3841 ggaccggcgc ctgggaagcc gcgctcgtca acgcgctgtc gcccggcgac aaggtgctga
     3901 tggccgagac gggccacttc gcctcgctgt ggcagaccat ggcgaagcgc ctagggctcg
     3961 agccggagct gatcccaacc gactggcgca cgggcgctcc cgccgacgcc atcgaggcgc
     4021 gactgaagga ggacaaggag cacgccatca aggccgtgtg cgtcgtccac aacgagacct
     4081 cgacgggcgc gacctcgcgc atcgacgagg tgcggcgcgc catcgacaac gcggcccatc
     4141 cggcgctgct catggtcgac accatctcgg gcctcgcctc gatcgactac cgccacgacg
     4201 agtggggcgt cgacgtgacg gtcagcgggt cgcagaaggg gctgatgctg ccgccgggcc
     4261 tgtccttcaa cgcgctcggc gaaaaggcgc tggcagcggc caagaagtca cgcttcccga
     4321 aatcgttctg gggctgggag gagatggtgg ccatcaacgc caccgggttc ttcccctaca
     4381 cgcccgcgac caacatgctc tacgcgctcg ccgaagcgat cgacatgctg cacgaggaag
     4441 ggctcgaaaa cgtcttcgcg cgccacgatc gtcacgccga ggcgacgcgc cgcgccgtgc
     4501 gcacctgggg cctcgacatc ctgtgcaagg acccgaagta ctactcgtcc gtgctcaccg
     4561 ccgtggtgat gcccgagggg cataacgccg acgagttccg c
//
LOCUS       DASQWN010000067         2616 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_105588, whole genome shotgun sequence.
ACCESSION   DASQWN010000067 DASQWN010000000
VERSION     DASQWN010000067.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2616)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2616)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2616
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_105588"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..252)
                     /locus_tag="VE686_01270"
     CDS             complement(<1..252)
                     /locus_tag="VE686_01270"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY83111.1"
                     /translation="MSRFRLVLLLVLIGALFPGAVAADPRGVDPDEPNPLAGLTFYND
                     PESPSMQQWRHLQRMGEQQKADLIWKIAGQPKALWLGRFT"
     gene            complement(320..862)
                     /locus_tag="VE686_01275"
     CDS             complement(320..862)
                     /locus_tag="VE686_01275"
                     /inference="COORDINATES: protein motif:HMM:NF019614.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1697 domain-containing protein"
                     /protein_id="HYY83112.1"
                     /translation="MPRYAGFLRGVNLGSRRKASSADLRSCFEGLGFEAVETFRTSGN
                     VVFDAGRESRAKLTGRIEQALAKSLGYDVTVFLRTAPEIQAIAAHQPFPAKSVEASKG
                     KLQVALLPAKPAARVRTEVLAMATDHDRLAFGDRELYWLPSGGTRDSALNLRSLEGQV
                     GPWTMRTKGTIDLLCTKFCA"
     gene            complement(862..1656)
                     /locus_tag="VE686_01280"
     CDS             complement(862..1656)
                     /locus_tag="VE686_01280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018316602.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="isocitrate lyase/phosphoenolpyruvate mutase
                     family protein"
                     /protein_id="HYY83113.1"
                     /translation="MSGQNEKAAAFRALHEGEPFIIPNPWDAGSARVFEALGYKALAT
                     TSSGFAFTLGRLDGSVTLAEIVEHTRALDQATALPVSVDLENGYGPQPEDAATAITRA
                     AEAGAVGGSIEDFDRGGELYTFDHAAERVAAAVEAARALSFPFTLTARAENHIRGNPD
                     LDDTIARLRAYERAGADVLYAPGLRNAADVRAVCEAVSKPVNVLAHPGLSMSEIVAAG
                     GQRVSVGGALAFVAVGAMAAVAEQMRDTGDFSSLGVRPPLKEWLGD"
     gene            complement(1665..2270)
                     /locus_tag="VE686_01285"
     CDS             complement(1665..2270)
                     /locus_tag="VE686_01285"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY83114.1"
                     /translation="MFHRVTVRASDREASERFYDTVLPTLGIEKGAWRDFVLEQADAE
                     RPVTRGLHIGFVAPSRAAVDEFWRAGTAAGYRDDGAPGPRPEYGDDYYGGFLLDPDGN
                     SAEAVHHDGLRRGGVVDHLWIRVADVAASKRFYEEVGPRAGFGLRTDTPGRAQFKGKS
                     GSFSVLSGTPTENLEMAFVASSAARLVDPDGNTVELVTSLA"
     gene            complement(2297..>2616)
                     /locus_tag="VE686_01290"
     CDS             complement(2297..>2616)
                     /locus_tag="VE686_01290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020174135.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HYY83115.1"
                     /translation="RALSVAGLADGHFDVVVIADDVAAPKPAPDLYLAACAALGAPPE
                     RAAALEDSQTGVASARAAGLYVIAVPYFPGTPIEGASLTAGSLADAGVAAALGVTFAG
                     DQV"
BASE COUNT          386 a          915 c          952 g          363 t
ORIGIN      
        1 cgtgaagcgc ccgagccaga gcgccttggg ctggccggcg atcttccaga tcaggtcggc
       61 cttctgctgc tcgcccatcc gctggaggtg acgccactgc tgcatcgagg gcgactccgg
      121 gtcgttgtag aaggtcaacc cggcgagcgg attgggctcg tccgggtcga cgccgcgtgg
      181 gtcggcggcc accgcgccag ggaagagcgc gccgatcagg accaggagaa ggacgagacg
      241 aaagcgcgac atgcaccgca gggtgcctga tgcggccgtc gataacgagc gaacggacga
      301 atatctgaga cccgcgttcc taggcgcaaa acttcgtgca tagcaggtca atcgtgccct
      361 tggtgcgcat cgtccagggc cccacctgcc cttcaaggct gcggaggttc agagccgagt
      421 cgcgcgtgcc gccgctgggc agccagtaga gctcgcggtc tccgaaggcg agccggtcgt
      481 ggtcggtcgc catcgcgagg acctccgtcc gaacgcgcgc cgcgggcttg gccggcagca
      541 gtgcgacctg cagctttccc ttcgacgcct ccaccgactt ggcgggaaac ggctggtgag
      601 ccgcgatcgc ctggatctca ggagcggtac gcaggaagac ggtcacgtcg tagccgagcg
      661 acttcgccag ggcctgctcg atccggccgg tcagcttcgc gcgcgattcc ctcccggcgt
      721 cgaagacgac gttgccgctc gtccggaagg tctcgacggc ctcgaagccg aggccttcga
      781 agcacgagcg caggtcggcg ctgctggcct tgcggcggct gccgaggttc accccccgca
      841 gaaagccggc gtaccgcggc atcagtcgcc gagccactcc ttcagcggtg gccggacacc
      901 gagcgatgag aagtcgccgg tgtcgcgcat ctgctcggcg acggcggcca tcgcgcccac
      961 ggccacgaac gcaagcgcgc cgcccacgct gacgcgctgc ccgcccgccg cgacgatctc
     1021 gctcatcgag agtcccggat gggcgaggac gttgaccggc ttcgatacgg cctcgcagac
     1081 cgcgcggacg tccgcggcgt tgcgcaggcc cggggcgtag agcacgtccg cgccagcccg
     1141 ctcgtaggcc cgcaggcggg cgatcgtgtc gtccaggtcg gggttgccgc ggatgtggtt
     1201 ctccgcgcgg gcggtgagcg tgaacggaaa gctcagggcg cgcgccgcct cgaccgccgc
     1261 cgccacccgc tcggccgcgt ggtcgaaggt atagagctcg ccaccgcgat cgaagtcctc
     1321 tatcgagccg cccaccgcgc ctgcctcggc cgcgcgggtg atggccgtgg ccgcgtcctc
     1381 gggctgcggg ccgtagccgt tttcgagatc gaccgagaca ggcagggcgg tcgcctgatc
     1441 gagagcgcgc gtgtgctcga cgatctccgc gagcgtgacg ctcccgtcca gccgtccgag
     1501 cgtgaacgcg aagccggagc tggtggtggc gagggccttg tagccgagcg cctcgaacac
     1561 ccgggcggag cccgcgtccc aggggttggg gatgatgaac ggctcgccct cgtggagggc
     1621 gcggaaggcc gccgccttct cgttctgacc gctcatccgg ccactcacgc tagcgaggtg
     1681 accagctcga cggtgttgcc gtcggggtcg accagccggg cggcgctgct cgcgacgaag
     1741 gccatctcca ggttctcggt cggagtgccc gagagcacgg agaacgatcc gctcttgccc
     1801 ttgaactggg cccggcccgg cgtgtcggtc cgcaagccga agccggcccg ggggcccacc
     1861 tcttcgtaga agcgcttcga agccgccacg tcggcaacgc ggatccagag gtggtcgacc
     1921 acgccgccgc ggcgcagccc gtcgtggtgc accgcctcgg cgctgttgcc gtcgggatcg
     1981 agcaggaagc cgccgtagta gtcgtcgccg tactccgggc gtggccccgg cgccccgtcg
     2041 tcgcgatagc cggccgccgt gccggcgcgc cagaactcgt cgaccgccgc gcgcgaggga
     2101 gcgacgaagc cgatatgaag cccccgtgtc accgggcgct cggcgtcggc ctgctccagg
     2161 acgaagtcgc gccacgcgcc cttctcgatg ccgagggtgg gcaggacggt gtcgtagaag
     2221 cgctcggacg cctcgcggtc cgaggcgcgc acggtcaccc ggtggaacac ggcgctaacc
     2281 aggtcatgcc gtagttctag acctgatcgc cggcgaatgt cacgcccagc gccgcggcca
     2341 ccccggcatc cgcgagcgag ccggcggtga gcgatgcccc ttcgatcggg gtgccgggga
     2401 agtagggcac ggcgatcacg tagaggccgg ccgcccgggc ggacgccacg ccggtctggg
     2461 agtcctccag ggccgcggcg cgctcgggag gagcgccgag cgccgcgcag gccgcgagat
     2521 agaggtcggg tgccggcttc ggcgcggcga cgtcgtcggc gatgaccacg acgtcgaagt
     2581 ggccgtcggc cagtccggcc accgacagag cccggt
//
LOCUS       DASQWN010000068         6719 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_608780, whole genome shotgun sequence.
ACCESSION   DASQWN010000068 DASQWN010000000
VERSION     DASQWN010000068.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 6719)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6719)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6719
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_608780"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1706)
                     /gene="lepA"
                     /locus_tag="VE686_01295"
     CDS             complement(<1..1706)
                     /gene="lepA"
                     /locus_tag="VE686_01295"
                     /EC_number="3.6.5.n1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018262923.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="translation elongation factor 4"
                     /protein_id="HYY83116.1"
                     /translation="MTAHPIDNIRNFSIVAHIDHGKSTLADRLIQTTGAVASRDMVEQ
                     VLDSMDIERERGITIKAQTVRLEYPAKDGKTYILNLMDTPGHVDFAYEVSRSLAACEG
                     SLLVVDASQGVEAQTLANVYQAIDAGHEIVPVLNKIDLPAAEPERVKEQIEEVIGIDA
                     SGAVPISAKTGLGIEDVLEAIVTRLPPPRGDATAPLKALLVDSWYDAYLGVVVLVRVI
                     DGALKKGTQITMMGTNADYEVDRIGVFRPKMQDAGALGPGEIGYITAQIKQVADTRVG
                     DTITETRRKTTAALPGFKPAQPVVFCGLFPVDAAQFEDLRAAMGRLRLNDASFSYEME
                     TSAALGFGFRCGFLGLLHLEIIQERLEREFNLDLIATAPSVIYRILLRDGEVLELHNP
                     ADMPDIMKIVSIEEPWIRATILTPDEYLGSVLKLCQDRRGEQVDLNYVGKRAMVVYDL
                     PLNEVVFDFYDRLKSISKGYASFDYHITEYREGDLVKMSILVNAEPVDALSMLVHRDR
                     AEMRGRAMCEKLRELIPQHLFQIPIQAAIGGKIIARETIRALSKDVTAKCYGGDISRK
                     RKL"
     gene            1887..4109
                     /gene="purL"
                     /locus_tag="VE686_01300"
     CDS             1887..4109
                     /gene="purL"
                     /locus_tag="VE686_01300"
                     /EC_number="6.3.5.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010685581.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004642 -
                     phosphoribosylformylglycinamidine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0006189 - 'de novo' IMP biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine synthase
                     subunit PurL"
                     /protein_id="HYY83117.1"
                     /translation="MIRNDVPITPDLVREHGLKEDEYARFTALIGREPTLTELGIVSA
                     MWNEHCSYKSSRLHLKTLPTKAPWVIQGPGENAGVIDIGDGLACVFKMESHNHPSFIE
                     PYQGAATGVGGILRDVFTMGARPIAALNFLRFGDPEHPRTRHLVAGVVAGIGGYGNSF
                     GVPTVGGSVGFHERYDGNILVNAMAVGLAKTDEIFYAAASGVGSPIVYLGSKTGRDGI
                     HGATMASAEFDDRSEEKRPTVQVGDPFAEKLLLEACLELMASGAVIAIQDMGAAGLTC
                     SAVEMGAKGDLGVELWLEKVPTREEGMTPYEMMLSESQERMLMVLKPGMEAEAEGIFR
                     KWGLDFAIIGQTTDTLRFVVKHHGEVMADLPIKELGDEAPLYDRPHIANTFEPTVPPE
                     SVEAPVPNAEALLKLVGSPDLCSKRWVWEQYDHLILGSTVQTPGGDAAIVRVEDGPKG
                     LALTTDVTPRYCQADPVEGGKQAVAEAWRNLTAVGAKPLAITDNLNFASPERPEAMGQ
                     LVGCIRGIGEACRALDFPVVSGNVSLYNETNGRGILPTPTIGGVGVLDDCARHATVAL
                     KREGDALIVVGATKGWLGQSVYLRDVCGREEGAPPPVDLACERRNGDFVRNLIRTGQA
                     DTVHDCSDGGLAVAVAEMAMAGGLGAVVGYAPEDLPLHAFLFGEDQGRYLLAVDPDCA
                     ADILYAAQAGGVAAVPIGFTGGTELILPGGEAISVERLKAAHEAWLPTYMSGELPPSS
                     "
     gene            4124..4360
                     /locus_tag="VE686_01305"
     CDS             4124..4360
                     /locus_tag="VE686_01305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017483049.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BolA family transcriptional regulator"
                     /protein_id="HYY83118.1"
                     /translation="MPMDARDIESLIREALPDARIEIKDLAGDGDHYAATVVSSAFKG
                     KTRVQQHQMVYSALQGRMGGVLHALALTTSAPQD"
     gene            4400..4735
                     /gene="grxD"
                     /locus_tag="VE686_01310"
     CDS             4400..4735
                     /gene="grxD"
                     /locus_tag="VE686_01310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009763309.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Grx4 family monothiol glutaredoxin"
                     /protein_id="HYY83119.1"
                     /translation="MTDAHTRIDTEVRSNDVVLFMKGTPDFPMCGFSSQVVQILGYLG
                     VPYKGVNVLEDQEVREGIKAYSNWPTIPQLYVKGEFVGGCDITREMFQSGELAQFLAE
                     KGVQVTQNA"
     gene            complement(4755..5384)
                     /gene="msrA"
                     /locus_tag="VE686_01315"
     CDS             complement(4755..5384)
                     /gene="msrA"
                     /locus_tag="VE686_01315"
                     /EC_number="1.8.4.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019994881.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008113 - peptide-methionine (S)-S-oxide
                     reductase activity [Evidence IEA];
                     GO_function: GO:0033744 -
                     L-methionine:thioredoxin-disulfide S-oxidoreductase
                     activity [Evidence IEA];
                     GO_process: GO:0006979 - response to oxidative stress
                     [Evidence IEA];
                     GO_process: GO:0030091 - protein repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptide-methionine (S)-S-oxide reductase MsrA"
                     /protein_id="HYY83120.1"
                     /translation="MRPLSLLLALGLLVAAHAAPADERTQAAPPPPAGMAVATFAGGC
                     FWCMEPPFDKLPGVVSTTSGYTGGTKVGATYREVSAGTTGHAEAVRIVYDPAKVSYGT
                     LVAVFWRNVDPVDAGGQFCDRGDEYRTGIFVHDAEQRRVAEESKRQLAESNRLGKPIV
                     TQVVDAGPFYVAEDYHQDYYVKNPTKYQFYRWNCGRDARLQELWGKEGS"
     gene            complement(5396..5893)
                     /gene="msrB"
                     /locus_tag="VE686_01320"
     CDS             complement(5396..5893)
                     /gene="msrB"
                     /locus_tag="VE686_01320"
                     /EC_number="1.8.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012110427.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0033743 - peptide-methionine (R)-S-oxide
                     reductase activity [Evidence IEA];
                     GO_process: GO:0006979 - response to oxidative stress
                     [Evidence IEA];
                     GO_process: GO:0030091 - protein repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptide-methionine (R)-S-oxide reductase MsrB"
                     /protein_id="HYY83121.1"
                     /translation="MMARRDFGLGIVGTAAAALGLSRGGDADAKDAKTYAVAYSDAEW
                     KQRLTPEQYRVLREHGTERPGSSPLNGEKRKGTFVCAACDQPVFTGETKFESGTGWPS
                     FYAPIEGGIGTSSDNTLFMTRTEVHCARCGGHLGHVFEDGPKPTGLRYCMNGVAMKFR
                     PADAA"
     gene            complement(5997..>6719)
                     /locus_tag="VE686_01325"
     CDS             complement(5997..>6719)
                     /locus_tag="VE686_01325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009763139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HYY83122.1"
                     /translation="ARILAIEPFLARKPRELSGGQRQRVAMGRAIVRKPQVFLFDEPL
                     SNLDAKLRVQMRVEIKRLQRALGVTSVYVTHDQVEAMTLSDKLVVMNGGVIDQVGTPT
                     DVYRRPATRFVATFIGSPPMNMLEGVVEGPGLVCVGGALLPVADMREGLKADTPVHVG
                     VRPEDVRVLKDASVAFRIEVDFVEELGATQLFHGRLDGTEFVLQANTGLIPTDARQLA
                     LGIDAANVHVFDRTTGQRLGRA"
BASE COUNT         1053 a         2264 c         2353 g         1049 t
ORIGIN      
        1 agcttgcgct tgcgggagat gtcgccgccg tagcacttgg cggtgacgtc cttcgacagc
       61 gcccggatcg tctcgcgggc gatgatcttg ccgccgatcg ccgcctggat ggggatctgg
      121 aacagatgct gcgggatcag ctcgcgcagc ttctcgcaca tggcgcggcc gcgcatctcg
      181 gcccggtcgc ggtggaccag catggacagc gcgtcgaccg gctcggcgtt gacgaggatc
      241 gacatcttca cgaggtcgcc ctcgcggtac tcagtgatat gatagtcgaa cgaggcgtag
      301 cccttcgaga tcgatttcag acgatcgtag aagtcgaaca ccacctcgtt cagcggcagg
      361 tcgtagacca ccatggcgcg cttgccgacg tagttgaggt cgacctgctc gccgcgccgg
      421 tcctggcaga gcttgagcac gctgccgagg tactcgtccg gcgtcagaat ggtggcgcgg
      481 atccacggct cctcgatgga cacgatcttc atgatgtccg gcatgtcggc cgggttgtgc
      541 agttccagga cctcgccgtc gcgcaggagg atgcggtaaa tgaccgacgg cgccgtggcg
      601 atcaggtcaa ggttgaactc gcgctcgagc cgctcctgga tgatctcgag gtggaggagc
      661 ccaagaaagc cgcagcggaa gccgaagccg agcgccgccg aggtctccat ctcgtacgag
      721 aagctggcgt cgttgaggcg caggcgcccc atggcggcac gaagatcctc gaactgcgct
      781 gcatcgacag ggaagaggcc gcagaagacg accggctgcg cgggcttgaa gcccggcagc
      841 gccgccgtcg tcttgcgccg cgtctccgtg atggtgtcgc cgacgcgagt gtcggccacc
      901 tgcttaatct gggcggtgat gtagccgatc tcccccgggc cgagggcgcc cgcatcctgc
      961 atcttggggc ggaagacgcc gatgcggtcg acctcgtagt cggcgttcgt gcccatcatg
     1021 gtgatctggg tgcccttctt gagcgccccg tcgatgaccc gcaccagcac cacgacgccg
     1081 aggtacgcgt cgtaccagct gtcgacgaga agcgccttga ggggcgccgt ggcgtcgccg
     1141 cgcggcggtg gcaggcgggt gacgatcgcc tcgagcacgt cctcgatgcc gaggcctgtc
     1201 ttggccgaga tcggcaccgc acccgaggca tcgatgccga tgacctcctc gatctgctcc
     1261 ttgacccgct ccggctcggc ggcgggcagg tcgatcttgt tgaggacggg gacgatctcg
     1321 tgcccggcgt cgatggcctg gtagacgttg gctagggtct gcgcctcgac cccttgcgag
     1381 gcgtcgacga cgaggagcga gccctcgcag gcggcgagcg agcgcgatac ctcgtaggcg
     1441 aagtcgacgt gcccgggggt gtccatcagg ttgaggatgt aggtcttgcc gtccttcgcc
     1501 gggtactcga ggcggacggt ctgcgccttg atggtgatgc cgcgctcgcg ctcgatgtcc
     1561 atggaatcga gcacctgctc gaccatgtcg cggctcgcca ccgcgcccgt cgtctggatc
     1621 agccggtcgg ccagcgtcga cttgccatgg tcgatgtgcg ccacgatgga aaagttgcgg
     1681 atgttgtcga tcggatgcgc ggtcatacgg gtctcgggcg gcgccgctcg cgagcggcgc
     1741 tcgggcgacg ttttgccgtc ggggaagctc ggcccggcag atatcagcgc gaagccgctt
     1801 ttccaagcga agccggtgtc gcgccgccgc gttgcgttag ggatgcgcag ggcttaaggc
     1861 cggggctcca cagccgcgag atgccgatga tccgcaacga cgtgcccatc acgcccgatc
     1921 tcgtgaggga gcacggcctg aaagaggacg agtacgcgcg cttcacggcg ctgatcggcc
     1981 gcgagccgac cctgacggag ctcggcatcg tctcggccat gtggaacgag cactgttcct
     2041 acaagtcctc gcggctgcac ctgaagactc ttccgaccaa ggcgccgtgg gtgatccagg
     2101 gcccgggcga gaacgccggc gtcatcgaca tcggcgacgg gctcgcctgc gtgttcaaga
     2161 tggagagcca caaccacccg agcttcatcg agccctacca gggcgcggcg acgggcgtcg
     2221 gcggcatcct gcgcgacgtc ttcaccatgg gagcgcggcc gatcgcggcg ctgaacttcc
     2281 tgcgcttcgg cgatcccgag cacccccgga cccgccacct ggtcgcgggc gtcgtcgcgg
     2341 gcatcggcgg ctacggcaac tccttcgggg tgccgacggt cggcggctcg gtcggcttcc
     2401 acgagcggta cgacggcaac atcctcgtca acgccatggc ggtcggcctc gccaagaccg
     2461 acgagatctt ctacgcggcg gcgagcggcg tcgggagccc catcgtctac ctcggctcga
     2521 agaccggacg cgacggcatc cacggcgcca ccatggcgtc ggcggagttc gacgacagat
     2581 ccgaggagaa gcgcccgacc gtgcaggtcg gcgacccctt cgccgagaag ctcctgctcg
     2641 aggcctgcct cgagctcatg gcgtccgggg ccgtcatcgc catccaggac atgggcgcgg
     2701 ccgggctcac ctgctcggcc gtcgagatgg gcgccaaggg cgacctcggc gtcgagctct
     2761 ggctcgagaa ggtgccgacc cgcgaagaag gcatgacccc gtacgagatg atgctgtccg
     2821 agagccagga gcgcatgctc atggtcctca agcccggcat ggaggcagag gcggaaggca
     2881 tcttccgcaa gtggggcctc gacttcgcga tcatcgggca gaccaccgac accctgcgct
     2941 tcgtcgtgaa gcaccacggc gaggtcatgg ccgacctccc catcaaggag ctcggcgacg
     3001 aggcgcctct ctacgaccgg ccgcatatcg ccaacacctt cgagccgacg gtcccgcccg
     3061 agagcgtgga ggcgccggtg cccaatgccg aggcgctgct gaagctcgtc ggctcgcccg
     3121 acctgtgctc gaaacggtgg gtgtgggagc agtacgacca cctcatcctc ggcagcacgg
     3181 tgcagacgcc ggggggcgac gccgcgatcg tgcgcgtcga ggacgggccg aaggggctcg
     3241 cgctcacgac cgacgtgacg ccgcgctact gccaagccga cccggtcgag ggcggcaagc
     3301 aggccgtggc ggaggcctgg cgcaacctca cggccgtggg ggccaagccg ctcgccatca
     3361 ccgacaacct caatttcgcc agccccgagc ggccggaggc catgggccag ctcgtcggct
     3421 gcatccgcgg catcggcgag gcctgccgtg cgctggactt ccccgtcgtt tccggcaacg
     3481 tctcgctcta caatgagacg aacgggcgcg gcatcctgcc gaccccgacc atcggcggcg
     3541 tcggagtgct cgacgactgt gcgcgtcacg ccacggtggc gttgaagcgg gagggcgacg
     3601 cgctgatcgt cgtcggcgcg acgaaaggct ggctggggca gtccgtgtac ctgcgcgacg
     3661 tctgcgggcg cgaggaaggc gctccgccgc ccgtcgatct cgcatgcgag cggcgcaacg
     3721 gcgacttcgt gcgcaacctg atccgcaccg ggcaggccga cacggtgcac gactgctccg
     3781 acggcggcct cgcggtggcg gtggccgaaa tggccatggc gggcgggctc ggcgccgtgg
     3841 tcggctatgc ccccgaggac ctgcctctgc acgccttcct gttcggcgag gaccagggcc
     3901 gctacctgct cgccgtcgat ccggactgcg ccgccgacat cctctatgcc gcccaggcgg
     3961 gcggcgtcgc cgccgttccg atcgggttca cgggcgggac cgagttgatc ctgcccggag
     4021 gcgaggccat atcggtggag aggctcaagg cggcgcacga ggcgtggctg ccgacctaca
     4081 tgagcggcga gctgccgccg tcatcctaag acgaggtccc cgcatgccca tggacgcgcg
     4141 cgacatcgag agcctgatcc gggaggcgct tccggacgcg cgcatcgaga tcaaggacct
     4201 cgccggcgac ggcgaccact acgcggcgac ggtcgtgtcg agcgccttca agggcaagac
     4261 ccgggtgcag cagcaccaga tggtctattc cgcgctgcag ggccgcatgg gcggcgtgct
     4321 gcacgccctt gcgctgacca caagcgcgcc ccaggattga tgcaacccgg cgccttgaaa
     4381 cgccgcacag gagaccacga tgaccgacgc ccacacccgc atcgacactg aagtgaggtc
     4441 caacgacgtc gtgctcttca tgaaggggac gcccgacttc cccatgtgcg gcttctcgag
     4501 ccaagtggtc caaatcctcg gctacctcgg cgtcccctac aagggcgtca acgtgctcga
     4561 ggaccaggag gtgcgcgagg gcatcaaggc ctactcgaac tggccgacga tcccccagct
     4621 ctacgtcaag ggcgagttcg tcggcggctg cgacatcacc cgcgagatgt tccagtccgg
     4681 cgagctggcg cagttcctcg ccgagaaggg cgtccaggtc acgcagaacg cttgaagaag
     4741 tcgccctggc ggcgtcagga accctccttg ccccagagct cctggagccg ggcgtcgcgg
     4801 ccgcagttcc agcggtagaa ctggtacttc gtcgggttct tgacgtagta gtcctggtgg
     4861 tagtcctcgg cgacgtagaa tgggccggca tcgacgacct gcgtgacaat gggcttgccg
     4921 aggcggttcg actcggcgag ctgccgtttc gactcctccg ccacccgccg ctgctcggcg
     4981 tcgtgcacga agatgccggt gcggtactcg tcgccgcggt cgcagaactg cccgcccgcg
     5041 tcgacagggt cgacgttgcg ccagaacact gcgacgagcg tcccgtacga gaccttggcg
     5101 ggatcgtaga cgatccgtac cgcctcggcg tgcccggtgg ttccggccga cacctcccgg
     5161 taggtggcgc ccaccttggt gccgcccgtg tagcccgacg ttgtcgagac cacgcccgga
     5221 agcttgtcga acggcggctc catgcaccag aagcacccgc ccgcgaaggt cgcgactgcc
     5281 atgccggccg gtggcggcgg ggcggcctgg gtacgctcgt ccgccggagc ggcgtgcgcg
     5341 gcgaccagca gtccaagcgc gaggagcagg gagagcggcc gcatggtcgc gctcctcaag
     5401 ccgcgtcggc gggccggaac ttcatggcga cgccgttcat gcagtagcgc aggcccgtgg
     5461 gcttggggcc gtcctcgaag acgtggccga ggtggccgcc acagcgcgcg cagtggacct
     5521 cggtccgggt catgaacagg gtgttgtccg acgaggttcc gatgccgccc tcgatcgggg
     5581 cgtagaagct cggccagccg gtgcccgact cgaacttcgt ctcgcccgtg aacaccggct
     5641 ggtcgcaggc ggcgcacacg aaggtgccct tgcgcttctc gccgttgagg gggctcgatc
     5701 ccggccgctc ggtgccgtgc tcgcgcagaa cgcggtactg ctccggtgtc aggcgctgct
     5761 tccattcggc gtccgagtag gccaccgcat aggttttcgc gtccttggcg tcggcatcgc
     5821 cgccgcgcga tagcccgagg gcggccgcgg ccgtgccgac gatcccaagc ccgaagtcac
     5881 gtcttgccat catcgcgtcc tcctgcggtc gcccctgccg gctaatatgg tgccggaagc
     5941 gccgcgccgc cgctcacgcc acatcacaac cgcgttttcg gctcgtacag cgcttgtcag
     6001 gcgcggccga ggcgctggcc ggtggtgcga tcgaagacat ggacattggc cgcgtcgatg
     6061 ccaagtgcga gctggcgcgc atcggtcggg atcaggcccg tgttggcctg caggacgaac
     6121 tcggtgccat ccaggcggcc gtggaacagc tgcgtcgccc cgagctcctc gacgaagtcg
     6181 acctcgatcc ggaacgcgac ggaggcgtcc ttcagcaccc gcacgtcctc gggccgcacg
     6241 cctacgtgga cgggggtgtc ggccttgagc ccctcgcgca tgtcggcgac gggcaggagc
     6301 gcgccgccga cgcatacgag gccgggccct tcgaccaccc cctccagcat gttcatgggc
     6361 ggcgagccga tgaaggtcgc gacgaagcgg gtcgcggggc ggcggtagac gtccgtcggg
     6421 gtgccgacct ggtcgatgac cccgccgttc atgaccacga gcttgtcgga cagcgtcatg
     6481 gcctcgacct ggtcgtgggt gacgtagacg gaggtgacgc cgagggcccg ctgcagccgc
     6541 ttgatctcga cgcgcatctg cacgcgcagc ttggcgtcga ggttggacag cggctcatcg
     6601 aagaggaaga cctggggctt gcgcacgatg gcgcggccca tggcgacgcg ctggcgctgg
     6661 ccgcccgaga gttcgcgcgg cttgcgcgcg aggaacggct cgatggcgag gatgcgggc
//
LOCUS       DASQWN010000069         2338 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1303641, whole genome shotgun sequence.
ACCESSION   DASQWN010000069 DASQWN010000000
VERSION     DASQWN010000069.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2338)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2338)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2338
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1303641"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..363
                     /locus_tag="VE686_01330"
     CDS             <1..363
                     /locus_tag="VE686_01330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008965298.1"
                     /note="similar to YegS from E. coli; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid kinase"
                     /protein_id="HYY83123.1"
                     /translation="AVIASEEGTARVLTLQIAVGNGRYYGGGNAVEKTATIDDQRLDL
                     YSLEFRRAWKLALLARSFRYGEQGAWDEVRAIRAREFEVTTRRRKAINADGEIVTHTP
                     ARFTIRPSAVTVFAPSGE"
     gene            complement(396..770)
                     /locus_tag="VE686_01335"
     CDS             complement(396..770)
                     /locus_tag="VE686_01335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009763611.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0004518 - nuclease activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YraN family protein"
                     /protein_id="HYY83124.1"
                     /translation="MRTAETRRRATYARGLSAESIALALLMLKGYRPLARRFCAAGGE
                     IDIIVRRGDAVAFVEVKARGAMDDALEAIDATKRRRFSRAARAWLSRHPWAVHKTLRA
                     DAVFVAPRRWPRHLVAAFELEM"
     gene            complement(767..1714)
                     /gene="rsmI"
                     /locus_tag="VE686_01340"
     CDS             complement(767..1714)
                     /gene="rsmI"
                     /locus_tag="VE686_01340"
                     /EC_number="2.1.1.198"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009763612.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008649 - rRNA methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0008757 - S-adenosylmethionine-dependent
                     methyltransferase activity [Evidence IEA];
                     GO_process: GO:0000451 - rRNA 2'-O-methylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA
                     (cytidine(1402)-2'-O)-methyltransferase"
                     /protein_id="HYY83125.1"
                     /translation="MAARIDNRTRRRAPSGRAPGVFTAFGLAAEAEPLDAGLYVVATP
                     IGNLKDVSFRALSVLAASDAVLAEDTRVTKTLLAHYGITTPLVPYHEHSNDAVRDRMV
                     LRVREGQALALVSDAGTPLVSDPGYKLVQAAIEAGLPVTPIPGPSAALTALVVSGLPT
                     DRFFFEGFLPSKAGARRTRLATIGTIPGTLMIFEAPHRLPEMLVDAAEVLGDRPAVVA
                     RELTKMFETVRRGTLPELAAQFGEEGPPKGEIVVLIGQAREDAGGPEVDAALDEKLEG
                     ALRQHSIKDAAALVADEMGRPKREVYARALALARAKDAP"
     gene            1877..>2338
                     /locus_tag="VE686_01345"
     CDS             1877..>2338
                     /locus_tag="VE686_01345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009763613.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HYY83126.1"
                     /translation="MPIASPFSRAVRAGLAMVAATSVAACVGSGGGGPSARGPDLPPA
                     GVQEAAPGGTLGAGETIGTGSVKVALVLPLSGPGQAQVAAVSLRNAAELALAEFQGPD
                     LTILVKDDAGTPEGAREATRQALAEGAELIIGPLFAGSVRAAGQVARQANRP"
BASE COUNT          339 a          842 c          849 g          308 t
ORIGIN      
        1 gccgtgatcg cgagcgagga agggaccgcg cgggtcctca ccctgcagat cgccgtcggc
       61 aacggccgct actacggcgg cggcaacgcc gtcgagaaga ccgcgaccat cgacgaccag
      121 cgcctcgacc tctacagcct cgagttcagg cgcgcctgga agctcgccct cctggcgcgc
      181 tcgttccgct acggcgagca gggcgcctgg gacgaggtcc gcgccatccg cgccagggaa
      241 ttcgaggtca cgacccggcg ccgcaaggcc atcaacgcag acggcgagat cgtcacccac
      301 acgcccgcgc gcttcaccat ccgccccagc gccgtgacgg tgtttgcgcc aagcggcgaa
      361 tagggaatgg cgagtggcgt ggagccgctt tgccctcaca tctcgagctc gaacgccgcc
      421 acgaggtgcc tcggccagcg ccgaggggca acgaagacgg cgtcggcgcg cagggtcttg
      481 tggacggccc acgggtgccg gctgagccag gcgcgggccg cgcgcgagaa gcggcggcgc
      541 ttggtggcgt cgatggcctc aagcgcgtcg tccatggcgc cgcgcgcctt gacctcgacg
      601 aaggccacgg catcaccgcg gcgcacgatg atgtcgatct cgccaccggc ggcgcagaag
      661 cgccgggcga gcgggcggta gcccttcagc atcaggagcg cgagcgcgat cgactcggcc
      721 gagaggccgc gggcgtaggt ggcgcgccgg cgcgtctccg ccgtcctcac ggagcatcct
      781 tcgcccgcgc cagcgccagg gcgcgggcgt agacctcgcg cttcggccgg cccatctcgt
      841 cggcgacgag cgccgccgcg tccttgatgg agtgctggcg cagggcgccc tcgagcttct
      901 cgtcgagggc ggcgtcgacc tccgggccgc ccgcatcctc ccgcgcctgg ccgatcagca
      961 ccacgatctc gcccttgggc ggtccctcct cgccgaactg ggcggcaagc tcgggcaggg
     1021 tgccccggcg gacggtctcg aacatcttgg tcagctcgcg cgcgaccacg gcgggccggt
     1081 cgccgagcac ctcggcggcg tcgacgagca tctcgggcag gcgatgcggc gcctcgaaga
     1141 tcatgagcgt gcccgggatc gtcccgatgg tggctagccg ggtccggcgg gcgccggcct
     1201 tcgagggcaa gaaaccttcg aagaagaagc ggtccgtcgg cagccccgaa accacgagcg
     1261 cggtgagggc ggccgacggg cccgggatgg gcgtcaccgg aagccccgcc tcgatcgcgg
     1321 cttgcacgag cttgtagccg ggatccgaga cgagcggcgt gcccgcgtcg gacacgagcg
     1381 ccagcgcctg gccctcgcgg acccgaagca ccatgcggtc ccggaccgca tcgttcgagt
     1441 gctcgtggta cggcacgagc ggcgtggtga tgccgtagtg cgccagaagc gtcttggtga
     1501 cccgcgtatc ctccgccagc acggcgtcgg acgccgcgag cacgctgaga gcacggaagg
     1561 agacgtcctt gagattgccg atcggggtcg cgacgacgta cagtccggca tcgagcggct
     1621 ccgcctcggc ggcgagcccg aaggcggtga acactcctgg cgcccgcccg ctcggagcgc
     1681 ggcggcgggt gcgattgtcg atcctggctg ccatggcccg caatctggca cggcccatcc
     1741 agcacatgaa cccgctgccg ccaaattgga aacaaagttt accgttcctt gccatggtga
     1801 aattcgcatc ccgcataggc gcgtgaccgg agcccattgt ttcgggcacg cgccggcgga
     1861 ggagggctcg cccgcaatgc ccatagcctc tcccttctcc agggccgtac gcgcgggcct
     1921 cgccatggtc gccgccacct cggtcgccgc gtgcgtcgga agcggcgggg gtggtccctc
     1981 ggctcgcggg ccggacctcc cgcccgccgg ggtgcaggaa gcggctccgg gtgggacgct
     2041 tggcgctggc gagacgatcg ggacgggttc cgtcaaggtc gccctcgtgc tgccgctaag
     2101 cggccccggg caggcgcagg tcgcggccgt gtcgctgcgc aatgcggccg agctcgcgct
     2161 ggccgagttc cagggcccgg acctcacgat cctcgtcaag gacgacgccg ggactcccga
     2221 gggcgcccgc gaggccaccc gccaggcgct ggccgagggc gccgagctca tcatcggtcc
     2281 tctgttcgcc gggtcggtcc gcgcggccgg acaagtggcg cggcaggcga accgcccg
//
LOCUS       DASQWN010000070         3338 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1402969, whole genome shotgun sequence.
ACCESSION   DASQWN010000070 DASQWN010000000
VERSION     DASQWN010000070.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 3338)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3338)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3338
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1402969"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..460)
                     /locus_tag="VE686_01350"
     CDS             complement(<1..460)
                     /locus_tag="VE686_01350"
                     /EC_number="2.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006338882.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family protein"
                     /protein_id="HYY83127.1"
                     /translation="MRADLSHWTPRPRPERRPIEGAYVRLEPLDAARHGDALFEAGSG
                     PEADRLFRYLGEHPLVDRASFQAWLDKAAASDDPLFYAAIDKATGRAEGRLSLMRMDP
                     AHGVIETGHLMFGPRLAQTRAATEAIYLLARYSFDELGYRRFEWKCNDRNE"
     gene            complement(457..1308)
                     /locus_tag="VE686_01355"
     CDS             complement(457..1308)
                     /locus_tag="VE686_01355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012335664.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="isocitrate lyase/phosphoenolpyruvate mutase
                     family protein"
                     /protein_id="HYY83128.1"
                     /translation="MTSRTIAERRADFRQLHESGCFVIPNPWDIGTTRYLQHLGFKAL
                     ATTSSGLSFSKGLPDTDWAVPRDMALEHIAEIVAATDLPVNADYESGYAHDPEGVAFS
                     VARCVETGVAGLSIEDSTGDPDKPLYDLSLGVERIKAARGAIDASGADVLLTGRAECY
                     LVGHPDPMTESIRRLQAYAEAGADVLYAPGPRKREDIRTLVQALAPKPVNLLMSSNTG
                     LTVRDAAELGVRRISVGSSLARVAWTGFIRAADAIAKQGRFSGFDGSMSFADLNGFFR
                     EDLKRRS"
     gene            complement(1456..3264)
                     /locus_tag="VE686_01360"
     CDS             complement(1456..3264)
                     /locus_tag="VE686_01360"
                     /EC_number="4.2.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009763325.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016836 - hydro-lyase activity [Evidence
                     IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IlvD/Edd family dehydratase"
                     /protein_id="HYY83129.1"
                     /translation="MAEARKRITPDKLRSRAWFDNPDNPGMTALYIERYLNFGLTVEE
                     LQAGKPVIGIAQTGSDLSPCNRHHIELAKRVRDGITAAGGVAFEFPTHPIQETGKRPT
                     ACLDRNLSYLSLVESLYGYFLDGVVMLTGCDKTMPACLMAAATVNIPTISLNVGPMLN
                     GWSRGDRTGSGTVVWKARERHAAGDIDYQQFIDIVASSAPSVGHCNTMGTASTMNALA
                     EALGMSLPGSAAIPAPYRERGQMAYESGKRIVEMVWEDLKPSDIMTREAFENVIVANA
                     AIGGSTNAPIHINAIAKHIGVELDCDDWERLGFEIPLLVNMQPAGQYLAEEYYRAGGL
                     PAVVAELIDAGKIHEGALTANGRSIGDNCRGKHSWDREVIRAYGEPLMEKAGFLNLKG
                     NLFDSAIMKTSVISKEFHDRYLADPKDPNAFEGRVVVFEGPEDYHHRIDDPALDIDEH
                     TILIMRGAGPIGYPGAAEVVNMQPPGTLIKRGVFSLPCVGDGRQSGTSGTPSILNASP
                     EAAAGGGLALLQTGDRVRIDLNKRSADILISDEELARRRKDLEARGGFAYPASQTPWQ
                     EIQRSMVDQLSEGMVLKPAVKYQKVAQTFGVPRDNH"
BASE COUNT          468 a         1101 c         1195 g          574 t
ORIGIN      
        1 gctcgttgcg gtcgttgcac ttccactcga agcgccggta gccgagctcg tcgaagctgt
       61 atcgggcaag caggtagatc gcctccgtgg cggcccgcgt ctgcgcgagg cgcggcccga
      121 acatcaggtg tcccgtttcg atgaccccgt gggcggggtc catgcgcatg agcgagagcc
      181 gcccttccgc gcggccggtc gctttgtcga tggccgcgta gaacagggga tcgtcggagg
      241 cagccgcctt gtcgagccaa gcctggaagg aggcgcgatc gacgagcgga tgctcgccga
      301 gatagcggaa gaggcgatcg gcctcgggcc cggagccggc ctcgaagagc gcgtcgccgt
      361 ggcgggcggc gtcgagcggc tcgagccgga cgtaggcgcc ttcgatgggg cgacgctccg
      421 gccgcgggcg cggcgtccag tgggacaggt cggccctcac gagcgcctct tcagatcttc
      481 gcggaagaag ccgttgaggt cagcgaacga catggagccg tcgaagcccg agaagcgccc
      541 ctgcttggcg atggcgtcgg cggcgcggat gaagcccgtc caggcgaccc gcgccaggga
      601 ggatccgacg ctgatgcggc gcacgccgag ctccgcggcg tcgcgcaccg tgagccccgt
      661 gttggagctc atgagcaggt tcacgggctt gggcgccagg gcctgcacga gggtcctgat
      721 gtcctcgcgc ttgcgcggcc ccggcgcgta gaggacgtcg gcgcccgcct ccgcatacgc
      781 ctgcaggcgg cggatcgatt ccgtcatggg gtccggatgg ccgacgaggt agcactcggc
      841 ccgcccggtc aggagcacgt cggcgccgct cgcgtcgatg gcgccgcgcg ccgccttgat
      901 gcgctcgacc ccaagggaga ggtcgtagag cggcttgtcg gggtcgccgg tcgaatcctc
      961 gatcgacagc cccgcgaccc cggtctcgac gcagcgggcg acgctgaacg ccacgccctc
     1021 cggatcgtgc gcgtagcccg actcgtagtc ggcgttcacg ggcaggtccg tcgcggcgac
     1081 gatctcggcg atgtgctcca gggccatgtc gcgcggcacc gcccagtcgg tgtcgggcag
     1141 gcccttcgag aacgacagcc ccgagctcgt cgtggccagc gccttgaagc cgaggtgctg
     1201 cagatagcgc gtcgtgccga tgtcccacgg gttcgggatc acgaagcagc cgctctcgtg
     1261 cagctgccgg aagtcggcgc ggcgctcggc gatggtccgg ctcgtcatgg cggccccttt
     1321 tggcttgcgg cagcttcctg cgacgctgtc gccggcgcca atgcattgcg gtgatccgac
     1381 ctatcgccgc ccgagatcgt ctcgggatcc gtctcgcggt tgttcacgtg gtttttgtcc
     1441 ggttttttcc ggttttcagt ggttgtcccg cggcactccg aaggtctgcg ccaccttctg
     1501 gtacttgacc gccggcttca ggaccatgcc ctcggagagc tggtcgacca tggagcgctg
     1561 gatctcctgc cagggcgtct ggctcgccgg ataggcgaag ccgccgcgcg cctcgagatc
     1621 cttgcggcgg cgcgcaagct cctcatccga aatgagaatg tcggccgagc gcttgttgag
     1681 gtcgatgcgc acgcggtccc ccgtctgcag gagcgcgagc ccgccgccgg ccgcggcttc
     1741 cggcgaggcg ttgaggatcg acggcgtgcc cgacgtgccg gactggcgcc cgtcgccgac
     1801 gcagggcagc gagaacacgc cccgtttgat gagggtgccg ggcggctgca tgttcacgac
     1861 ctccgccgcg cccggatagc cgatcggccc cgccccgcgc atgatcagga tcgtgtgctc
     1921 gtcgatgtcg agcgccgggt cgtcgatgcg gtggtggtag tcctccggtc cctcgaaaac
     1981 caccacccgc ccctcgaacg cgttggggtc cttgggatcc gccaggtagc ggtcgtggaa
     2041 ctccttcgag atcacgctcg tcttcatgat cgccgaatcg aacaggttgc ccttgaggtt
     2101 caggaacccg gccttctcca tcagcggctc gccgtaggcg cggatcacct cgcggtccca
     2161 cgagtgcttg ccgcggcaat tgtcgccgat gctgcgcccg ttcgccgtca gcgcgccctc
     2221 gtggattttg cccgcgtcga tgagttccgc gacaaccgcc ggaaggccgc ccgcccggta
     2281 gtattcctcg gcgagatact ggccggccgg ctgcatgttg acgagtagcg ggatctcgaa
     2341 gccgaggcgc tcccagtcgt cgcagtcgag ctcgacgccg atgtgcttgg cgatggcgtt
     2401 gatgtggatc ggcgcattgg tcgacccgcc gatggcggcg ttcgcgacga tgacgttctc
     2461 gaacgcctcc cgcgtcatga tgtcggaggg cttcaggtcc tcccagacca tctcgacgat
     2521 gcgcttgccc gactcgtagg ccatctggcc gcgctcgcgg tacggcgccg ggatcgcggc
     2581 cgagcccggc agcgacatgc cgagcgcctc ggcaagcgca ttcatggtcg aggccgtgcc
     2641 catggtgttg cagtggccga ccgacggcgc ggaggacgcg acgatgtcga tgaactgctg
     2701 gtagtcgatg tcgccggcgg cgtggcgctc gcgcgccttc cacaccaccg tgcccgagcc
     2761 ggtgcggtcg ccgcggctcc agccattgag catcggcccg acgttgagcg agatcgtcgg
     2821 gatgttcacc gtcgccgccg ccatgaggca ggccggcatg gttttgtcgc agccggtgag
     2881 catgacgacg ccgtcgagga agtagccgta gaggctctcg accagggaaa gatagctgag
     2941 attgcggtcc aggcaggcgg tcggacgctt gcccgtctcc tggatcgggt gggtcgggaa
     3001 ctcgaaggcg acgccgccgg ccgccgtgat gccgtcgcgc acgcgcttgg cgagctcgat
     3061 gtggtgtcga ttgcagggtg agaggtcgga gccggtctgg gcgatgccga tgaccggctt
     3121 gccggcctgg agctcttcga cggtgagacc gaagttcagg tagcgctcga tgtagagcgc
     3181 ggtcatccca ggattgtcgg ggttgtcgaa ccacgcccgc gaccggagct tgtcgggagt
     3241 gatgcgcttg cgtgcctcgg ccatgctgtc ctcctggggc cggcgctcca tcggctctgg
     3301 cccgaaattt ggcgcggaca ttggacccga caggcatg
//
LOCUS       DASQWN010000071         2570 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1105037, whole genome shotgun sequence.
ACCESSION   DASQWN010000071 DASQWN010000000
VERSION     DASQWN010000071.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2570)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2570)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2570
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1105037"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..969)
                     /locus_tag="VE686_01365"
     CDS             complement(<1..969)
                     /locus_tag="VE686_01365"
                     /inference="COORDINATES: protein motif:HMM:NF013584.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016810 - hydrolase activity, acting on
                     carbon-nitrogen (but not peptide) bonds [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidase"
                     /protein_id="HYY83130.1"
                     /translation="MDPADLGASELSAFFATGELSPIDAVEAALARIERMNPVLNAVV
                     TLDCEGARASARASSERWANQAALGPLDGVPVTIKDNLLVAGMRATWGSRLYADFVPD
                     ADELPVARLRAAGAVILGKTNVPELTLQGYTDNQLFGPSRNPFNPALTPGGSSGGAVA
                     SVASGMAPLALGTDGGGSIRRPASHTGLFGLKPTIGRVARADGFPAILHDFEVVGPIA
                     RNLDDIELAMSVLAGPDLRDSASLAWPIWRRPRATKSPEKQRILFISQFEASPVDPEV
                     GASVDQAVQTFEDLGHCVESGSLDFAVDKLARIFAVVPQAGVAWLLR"
     gene            complement(970..2274)
                     /locus_tag="VE686_01370"
     CDS             complement(970..2274)
                     /locus_tag="VE686_01370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009210519.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0031317 - tripartite ATP-independent
                     periplasmic transporter complex [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0008643 - carbohydrate transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TRAP transporter large permease"
                     /protein_id="HYY83131.1"
                     /translation="MSITIVFAAFLVSLGVLVVGLPVAAVLAGIGLAGGLASLGPRFV
                     DSMGSVIWGVQNENLLTAIPMFILLGEILLRSGLADKMYVGLSVWFSRLPGGLLHSNI
                     GGCALFAATCGSSVATAATIGTVALPALEQRGYDRPRALGSIAAGGTLGILIPPSVAM
                     LIYGSLTNNSVGQLFIAGIVPGILLSASFMLYIAVSAKLSGDTRVPEPRVPLAIKLRK
                     SVDLVPPLIIFGVVMGSLYLGLATPTESASLGVVVALALAGIFGRLDWTMLKHCSRQT
                     AVLTGTIILIICGAFILNVTLSLLGIPQGMTKAIAALSIDPTTIVFILIVFYLILGCF
                     LEVLSMQVTTIPIVYPIATAIGIDPIWLGVFIVLMSELAMITPPVGMNLYVVQSIRHD
                     GGPIGDVIRGVIPYVFIMIAFTILLWFVPELALWLPRTMAGR"
     gene            complement(2281..>2570)
                     /locus_tag="VE686_01375"
     CDS             complement(2281..>2570)
                     /locus_tag="VE686_01375"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="TRAP transporter small permease"
                     /protein_id="HYY83132.1"
                     /translation="MVAAFAALLVYVGVIVVRETIDFGSTAPTPWATPLVWPQSAWLA
                     ALVIFLLAALGRFFAATRLLATGRTGELDRHHGPKAAEEEVQEELADLKRR"
BASE COUNT          505 a          813 c          874 g          378 t
ORIGIN      
        1 ccgcagcagc catgcgactc ccgcttgcgg gaccaccgcg aagatgcgtg cgagcttgtc
       61 gacggcaaag tccaacgagc cgctttcgac gcagtggcct agatcctcga acgtctgaac
      121 cgcctgatca acgctcgctc cgacctctgg gtcaaccggc gacgcttcga actggcttat
      181 gaaaaggatg cgctgcttct caggtgattt tgtcgcgcgc gggcggcgcc aaatcggcca
      241 cgccaaggat gccgagtctc gcaagtcagg gcctgccaat accgacatcg caagctcgat
      301 gtcatcgagg ttccgggcga ttggccccac gacctcgaaa tcgtgcagga tggccggaaa
      361 gccgtcggcc cgcgccacgc gaccgatcgt cggcttcagc ccgaacagcc ccgtgtgaga
      421 tgctggccgg cggatcgatc caccgccgtc cgttccgagc gcgagcggag ccatgccgct
      481 cgcgacagaa gcgacggcgc ccccgctcga tccgcccggg gtgagcgcgg ggttgaacgg
      541 gttgcggctg ggtccgaaaa gctggttgtc ggtgtagccc tggagggtga gctcaggaac
      601 gttggtcttg ccaaggatca ccgcaccagc ggcacgcagg cgtgcgaccg gaagctcatc
      661 cgcatccggg acgaaatccg cgtacagccg cgagccccag gttgcgcgca tccctgcgac
      721 cagcaggttg tccttgatgg tgaccggaac gccgtcaagc gggccgagcg ccgcctgatt
      781 ggcccagcgc tcggagctcg cgcgcgcgga ggctcgggcg ccctcgcaat cgagcgtgac
      841 cacggcattc agcaccgggt tcatacgctc gatccgggca agcgcggcct cgacggcgtc
      901 tatcggggac agctcgcctg tcgcgaaaaa cgccgacagc tcgctcgcgc cgagatcagc
      961 cggatccatt taacgaccgg ccatcgtgcg cggaagccag agcgccagct cgggcacgaa
     1021 ccacaggagg atcgtgaacg cgatcattat gaagacgtac gggatcacgc cgcggatcac
     1081 atcaccgatc gggccgccgt cgtgccggat actctggacc acgtagaggt tcatgccgac
     1141 cggcggggtt atcatggcga gttcgctcat gagcacgatg aagacgccga gccagatcgg
     1201 gtcgatgccg atcgccgtgg cgataggata gacgatcgga atcgtcgtca cctgcatcga
     1261 caggacctcg aggaagcagc cgaggatcag gtagaacacg atcaggatga acacgatcgt
     1321 ggtcgggtcg atggacagcg ccgcgatggc tttcgtcatc ccctgcggga tgccgagcag
     1381 gctcagggtc acgttcagga tgaacgctcc gcagatgatg agaatgatgg tgccggtgag
     1441 cacggccgtc tgacgagagc agtgcttgag catcgtccag tcgagccggc cgaagatccc
     1501 ggcgagcgcg agggcaacaa ccaccccgag cgacgcggac tcggtcggcg tcgcgaggcc
     1561 gaggtagagg cttcccataa ccacgccgaa gataatcagc ggcggcacga ggtcgacaga
     1621 cttcctgagt ttgatcgcta gcgggacccg cggctccggc acccgcgtgt cccccgagag
     1681 cttcgccgag acagcgatgt acagcatgaa cgatgccgag agcaggatcc ccggaacgat
     1741 accagcgatg aagagctgcc cgacggaatt gttggtgagc gagccgtaga tcagcatggc
     1801 gacgctcggc gggatcagga ttccgagcgt tccgccggcc gctatggagc cgagtgcgcg
     1861 ggggcgatcg tagccccgct gctcgagcgc aggcagcgcg acggtgccga tcgttgcggc
     1921 ggtcgcgacc gaggagccgc aggtcgcagc aaacagcgcg catccgccga tgttgctgtg
     1981 gaggagcccg ccggggaggc gtgagaacca cactgagagg ccgacataca tcttatcggc
     2041 gaggccgctt cgaagcagga tctcgcctag caggatgaac attggaatcg ccgtgaggag
     2101 gttttcgttc tggacgcccc agatgacgct gcccatggag tcgacgaagc gcggcccgag
     2161 gctcgcgagc cccccggcga gcccgatgcc cgccagaacg gcggcgaccg ggaggccgac
     2221 taccaggacc ccgagactca caaggaatgc ggcgaagacg atggtgatgg acatggccgg
     2281 tcagcgccgc ttgaggtccg ccagctcttc ctgaacctcc tcctcggcgg ctttcgggcc
     2341 gtgatggcgg tcgagctctc cggtacggcc agttgcgaga agccgcgtcg cggcgaaaaa
     2401 gcggccgagt gccgcgagga ggaagatgac gagcgccgcc agccacgcac tttggggcca
     2461 cacgagcggc gtggcccaag gcgttggcgc cgtgctgccg aagtcgatgg tctcgcgaac
     2521 gacgatcacc ccaacgtaga ctaggagtgc cgcgaaggcg gccaccatcg
//
LOCUS       DASQWN010000072         3941 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1303953, whole genome shotgun sequence.
ACCESSION   DASQWN010000072 DASQWN010000000
VERSION     DASQWN010000072.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 3941)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3941)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3941
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1303953"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..775
                     /locus_tag="VE686_01380"
     CDS             <1..775
                     /locus_tag="VE686_01380"
                     /EC_number="2.3.1.179"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017482618.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="beta-ketoacyl-ACP synthase II"
                     /protein_id="HYY83133.1"
                     /translation="HSVVTACSTGSHAIGDAARLIALGDADVMVAGGAESPINRLSLA
                     GFAACRALSTNFNDDPTRASRPYDKDRDGFVMGEGAGVVVVEEYEHAKARGAKIYAEV
                     IGYGLSGDAFHITSPTEDGDGAYRCMKAAIKRAGIEPSDIDYINAHGTSTPLGDEIEL
                     KAVERIVGNAAAKIAMSSTKSSIGHLLGAAGAVEAIFSVLAIRDQVAPPTLNLDNPSV
                     ETAIDLVPHKGQPRDIDVVLSNSFGFGGTNASLIMRRAA"
     gene            875..2236
                     /gene="mltG"
                     /locus_tag="VE686_01385"
     CDS             875..2236
                     /gene="mltG"
                     /locus_tag="VE686_01385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012333001.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008932 - lytic endotransglycosylase
                     activity [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0071555 - cell wall organization [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="endolytic transglycosylase MltG"
                     /protein_id="HYY83134.1"
                     /translation="MFGRLKRTQATPASTPEGVDPTPFRVSPKSPGEAIKPSVAPPPP
                     PRIKRPRGGLLSTMSALLTFAVAIAAVLFLGFVVVEREATSPGPLPDDKVVLIPRNTG
                     TTEIAALLKREGVVEHPFLFEMYALLNRQRGQLKAGEFQFKAHASVTDAINTLIEGKA
                     ILHSVTIPEGLTSEQIVQRLRDNDALSGDVMDVPREGTLLPDTYKFERGMTRQQLVNA
                     MQAAQRQALTQVWARRSPDLPIKTPQELVILASIVEKETGRADERSRVAGVFINRLVK
                     RMKLQSDPTIVYGLVGGKGTLGRGILKSEIERPTPYNTYVVDGLPPGPIANPGRAALE
                     AVANPSRTKDVFFVADGTGGHVFAETLEQHARNVARWRQVEKARAVAGETPVDRVEPP
                     PDGRTDAPTAPGAASAFTAGTAAPAGGRSRAFDAVEGTTRDPLLNRSYDLNSPKNVPN
                     LRQ"
     gene            2320..3189
                     /locus_tag="VE686_01390"
     CDS             2320..3189
                     /locus_tag="VE686_01390"
                     /EC_number="3.1.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007559674.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016788 - hydrolase activity, acting on
                     ester bonds [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YicC/YloC family endoribonuclease"
                     /protein_id="HYY83135.1"
                     /translation="MTGFARETGVTGSFQWAWEIKSVNGRGLDVRVRVPPGFDAIGEA
                     ARSEIQKAFSRGQCQLNLSITRSATAPRVRINQDVLAGLADALASVKLPEGMRPPSVD
                     GLLAIRGVVEIDDDASEETETALHADLRAGATRLVAALTAARRAEGQALHAVIEGQLA
                     EIERLTAAADAHPARRPEAVRAKLESQIASLVDASSALDPARLHQEAVLMAARADIRE
                     ELDRLNAHVGAARELMSAQGAVGRRLDFLAQEFGREANTLTSKANDVSLSRIGLDLKS
                     VVEQFREQVQNVE"
     gene            3195..3827
                     /gene="gmk"
                     /locus_tag="VE686_01395"
     CDS             3195..3827
                     /gene="gmk"
                     /locus_tag="VE686_01395"
                     /EC_number="2.7.4.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018390324.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004385 - guanylate kinase activity
                     [Evidence IEA];
                     GO_process: GO:0015949 - nucleobase-containing small
                     molecule interconversion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="guanylate kinase"
                     /protein_id="HYY83136.1"
                     /translation="MEIKRRGLLLILSSPSGAGKSTLTQTLVREDASIKLSVSVTTRH
                     KRQSEIEGVHYRFITPTDFEKMCARDELLEFAEVHGNHYGTPREAVEHALAAGQDIMF
                     DIDWQGTRQVCEKLRDDVVSVFILPPSMRELKARLERRAEDSDDVIARRLDNARQEIA
                     QWGNYDYVLVNDDLQTTFDNLKAILSAERLRRLRQAGMERFVEALLQERV"
BASE COUNT          649 a         1400 c         1336 g          556 t
ORIGIN      
        1 ccattccgtc gtgaccgcgt gctcgaccgg gtcgcacgcc atcggcgatg cggcgcgcct
       61 gatcgccctc ggcgacgcgg acgtgatggt cgccgggggg gccgagtcgc ccatcaaccg
      121 gctgtcgctc gccggcttcg cggcctgccg cgcgctgtcg accaacttca acgacgaccc
      181 gacccgcgcg tcgcgcccct acgacaagga ccgcgacggc ttcgtcatgg gcgagggcgc
      241 cggggttgtc gtggtcgagg aatacgagca cgccaaggcg cgcggggcca agatctacgc
      301 cgaggtgatc ggctacggcc tctcaggcga cgcgttccac atcacctcgc cgaccgagga
      361 cggcgacggc gcctatcgct gcatgaaggc ggcgatcaag cgcgccggca tcgagccgtc
      421 ggacatcgac tacatcaacg cgcacggcac ctcgacgccg ctcggcgacg agatcgagct
      481 caaggcggtc gagcgcatcg tcggcaacgc cgccgcgaag atcgccatgt cgtcgacgaa
      541 atcgtcgatc gggcacctgc tcggcgcggc cggcgccgtg gaggcgatct tctcggtcct
      601 ggcgatccgc gaccaggtcg ccccgccgac gctcaacctc gacaacccgt ccgtcgagac
      661 cgcgatcgac ctcgtgcccc acaagggaca gccgcgggac atcgacgtgg tcctgtcgaa
      721 ctcgttcggc tttggcggca ccaacgcgtc cctgatcatg cgccgggcgg cgtaaggtgc
      781 cggtcggcca cgccatttcg ccacaatccc ccggcacttc aacgacgcgg gagcggcgcg
      841 acgggtcggc cgcgcgaggc actcaagtgt ggtcatgttc ggcagactga aacgcacgca
      901 agcgactcca gcaagcaccc ccgagggcgt cgacccgacg cccttccggg tctccccgaa
      961 gagccccggc gaagccatca agccgagcgt cgcgccgccg ccgccgcccc gcatcaagcg
     1021 tccgcggggc gggcttctgt cgaccatgag cgcgctgttg accttcgcgg tcgcgatcgc
     1081 ggccgtgctc ttcctcgggt tcgtcgtggt cgagcgcgag gcgacctccc ccgggccgct
     1141 cccggacgac aaggtcgtgc tcatcccccg caacaccggc acgaccgaga tcgccgccct
     1201 gttgaagcgc gagggggtgg tcgagcaccc gttcctgttc gagatgtatg cgctcctgaa
     1261 ccgccagcgc ggccagctca aggccggcga gttccagttc aaggcgcacg ccagcgtgac
     1321 cgatgcgatc aacacgctga tcgagggcaa ggcgatcctg cactcggtta cgattcccga
     1381 aggcctgacg agcgagcaga tcgtccagcg ccttcgcgac aacgacgcac tgagcgggga
     1441 cgtgatggac gtgccccgcg agggcacgct gcttccagac acctacaaat tcgagcgcgg
     1501 catgacgcgc cagcagctcg tcaacgccat gcaggcggct caacgccagg ccctgaccca
     1561 agtctgggcc cggcgttcgc ccgatctgcc gatcaagacg ccgcaggaac tcgtgatcct
     1621 ggcctcgatc gtcgagaagg agacggggcg ggccgacgag cgctcgcgcg tcgccggcgt
     1681 gttcatcaac cggctcgtca agcgcatgaa gctgcagtcg gacccgacga tcgtgtacgg
     1741 gctcgtcggc ggcaagggga cgctcgggcg cgggatcctc aagtccgaga tcgagaggcc
     1801 gacgccgtac aacacctacg tcgtcgacgg gcttccgccc gggcccatcg ccaaccccgg
     1861 gcgcgccgcc ctcgaggcgg tcgccaatcc gtcccgcacc aaggatgtgt tcttcgtggc
     1921 ggacgggacc ggcgggcatg tcttcgccga gacgctggag cagcacgcgc gcaacgtcgc
     1981 gcgctggcgt caggtcgaga aggcccgcgc cgtggcgggc gagacgcccg tggacagggt
     2041 ggagccgccg ccggacggcc ggacggacgc gcccaccgct cccggggccg cgtcggcatt
     2101 caccgccggc accgccgccc cggccggggg ccggtcacgc gccttcgacg cggtcgaggg
     2161 cacgacgcgc gaccccctcc tcaacaggtc ctacgacctg aactcaccga agaacgtgcc
     2221 gaacctgcgg cagtagcggt cctgctgctt gtcgcgtcgg cgggccgcca ctatggtccg
     2281 cgccacgtcg cgcgggggcc gggtttgacg attgccagca tgaccgggtt tgcccgcgag
     2341 acgggcgtga ccgggtcgtt ccagtgggcc tgggaaatca agagcgtcaa cggccgcggg
     2401 ctcgacgtgc gcgtgcgcgt gccgcccggc ttcgatgcga tcggcgaggc ggcccggtcc
     2461 gagatccaga aggcgttctc acgcgggcag tgccagctca acctgtccat cacgcgcagc
     2521 gccacggcgc cccgggtcag gatcaaccag gacgtccttg ccgggctggc cgatgccctg
     2581 gcgagcgtga agctcccgga aggcatgcgg ccgccgtccg tcgacggcct tctggcgatt
     2641 cgcggcgtcg tcgagatcga cgacgacgcc tcggaagaga ccgagaccgc gctccatgcc
     2701 gatctgcgcg ccggcgcaac gcgcctcgtt gcggcgctga cggcagcccg tcgggccgag
     2761 gggcaggcct tgcacgccgt catcgaaggc cagctcgccg agatcgagcg tttgaccgcg
     2821 gcggccgatg cccatccggc gcgccgtccc gaagcggtgc gcgcgaagct cgagagccag
     2881 atcgccagcc tcgtcgacgc gtcctccgct ctcgatcccg cccgcctgca ccaggaggcc
     2941 gtgctcatgg cggcccgcgc cgacatccgc gaggagctcg atcgcctgaa cgcccatgtg
     3001 ggggcggctc gtgagctcat gtccgcgcaa ggtgcggttg gccgccgcct cgacttcctc
     3061 gcccaggaat tcgggcgtga agccaatacg ctcacctcga aggcaaacga tgtctctctc
     3121 tcgcgcatcg gcctcgacct caagtcggtc gtcgagcagt ttcgcgagca ggtccagaac
     3181 gtggagtagg ggccgtggag atcaaacggc gcggcctgct gctgattctc tcgtcgccct
     3241 cgggcgcggg caagtcgacc ctgacccaga cgctggtccg agaagacgcg agcatcaagc
     3301 tctctgtgtc ggtgacgacg cggcacaagc gccagtccga gatcgagggg gtccattacc
     3361 gcttcatcac gcctaccgac ttcgagaaga tgtgcgcgcg cgacgagctg ctcgagttcg
     3421 cggaggtgca cggcaaccac tacggcacgc cgcgcgaagc ggtcgagcac gccctggcgg
     3481 ccggccagga catcatgttc gacatcgact ggcagggcac caggcaggtc tgcgagaagc
     3541 ttcgggacga cgtcgtcagc gtcttcatcc tgccgccgtc catgcgggag ctgaaggcgc
     3601 gcctggagcg ccgggcggag gattcggacg acgtcattgc ccgccggctc gacaatgcgc
     3661 gccaggagat cgcccagtgg ggaaactacg actacgtcct cgtgaacgat gacctgcaga
     3721 cgaccttcga caacctgaag gccatcctct ccgccgagcg gctgcgccgg ttgcggcagg
     3781 ccggcatgga gcgcttcgtg gaagcgctgc tgcaggagcg ggtctagccg gatcccctcc
     3841 gaccggcccg caacaaccgt tccccggaca gagatcaccg gaatgccaat gacgggttgt
     3901 ctccgagcga gaagggccta tgggcgacgc atcgcgtcga a
//
LOCUS       DASQWN010000073         2021 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1403405, whole genome shotgun sequence.
ACCESSION   DASQWN010000073 DASQWN010000000
VERSION     DASQWN010000073.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2021)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2021)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2021
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1403405"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1848
                     /locus_tag="VE686_01400"
     CDS             <1..1848
                     /locus_tag="VE686_01400"
                     /EC_number="2.7.6.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019401519.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0015970 - guanosine tetraphosphate
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional (p)ppGpp
                     synthetase/guanosine-3',5'-bis(diphosphate)
                     3'-pyrophosphohydrolase"
                     /protein_id="HYY83137.1"
                     /translation="PFSSSEERQAENFRKMLLAMVDDIRVILVKLADRLHNMRTLQFM
                     PPDKRRRIAEETLEIYAPLAGRMGIQEMREELEDLAFQTLNPEAYETISRHLRELTAK
                     SEKLVGQIERDLLAKLEAKGLVAEVKGRQKRPYSIWRKMERKSVAFEQLSDVVGFRIV
                     VDSIDDCYRALGVVHTTWPMVPGRYKDWISTPKQNDYRSIHTTVIGPGSQRVELQIRT
                     HAMDEVAEYGIAAHALYKEGKTDPAQLATESRAYQWLRRTVDLLAEGDNPEEFLEHTK
                     LELFHDQVFCFTPKGRLIALPRGATPIDFAYAVHTDVGNTAVGAKINGRMAPLLTELQ
                     NGDEVEIVRAEGQTPPAAWESLVVTGKARAAIRRATRTAVRRQYAGLGRQILERAFER
                     AGKKISDDKLKAALGRLARGTIEDVLAAVGRGEMFSGDVVRAVYPEYREARAVSEPNG
                     AGDGGRKGNGADGEPRGIPIRGLNADLPVRFAPDGGAIPGDRIVGIMTPGQGVTIYPI
                     QSPALAAFDNEPDRWIDVRWDIDPADPQRFPARLALQSINEPGTLAQIAQVVADHDGN
                     IDNVSMKRRTQDFTDMTLDLAVWDVKHLNAIIAELRAKQVVSKVERVTG"
BASE COUNT          382 a          707 c          648 g          284 t
ORIGIN      
        1 ccattttcgt ccagcgaaga acgccaggcg gagaacttcc ggaagatgct gctggcgatg
       61 gttgacgaca ttcgagtgat cctcgtcaag cttgccgacc gcctccacaa tatgcgcacc
      121 ctccagttca tgccgcccga caagcgacgg cgcatcgcgg aggaaacgct cgagatctac
      181 gcgccgctcg caggccgcat gggcatccag gagatgcgcg aggaactcga ggacctggcc
      241 ttccagaccc tcaatccgga ggcctacgag accatcagcc ggcacctgcg cgagctcacc
      301 gcgaagagcg aaaagctcgt cggccagatc gagcgcgacc tcctcgccaa gctcgaggcg
      361 aaggggctcg tggccgaggt gaaggggcgc cagaagcggc cctattcgat ctggcgcaag
      421 atggagcgca agtcggtcgc gttcgagcag ctctcggacg tggtcggatt ccgcatcgtc
      481 gtcgacagca tcgacgactg ctatcgggcc ctcggggttg tgcacaccac atggccgatg
      541 gtgccgggcc ggtacaagga ttggatctcg accccgaagc agaacgatta ccgctcgatc
      601 cacaccaccg tgatcggccc cggcagccag cgcgtcgagc tgcagatccg cacccacgcg
      661 atggatgagg tggcggagta cggcatcgcc gcacacgcac tctacaagga aggcaagacc
      721 gaccccgcgc agctcgccac ggaaagccgc gcctaccagt ggctccggcg caccgtcgac
      781 ctcctggcgg agggcgacaa tcccgaggag ttcctcgagc acaccaagct cgagctgttc
      841 cacgaccagg tcttctgctt cacgcccaag ggccggctca tcgccctgcc ccggggcgcg
      901 acgcccatcg acttcgccta cgcggtccac accgacgtcg gcaacacggc ggttggcgcc
      961 aagatcaacg gccgcatggc gcccctcctg accgagctgc agaacggcga cgaggtcgag
     1021 atcgtccgcg ccgaggggca gacgcccccc gccgcctggg agtccctcgt cgtcaccggc
     1081 aaggcgcggg cggcgatccg gcgggcgacg cgcacggccg tgcgccggca gtacgccggc
     1141 ctcggccgcc aaatcctcga acgggcgttc gagcgggccg gcaagaagat ttccgacgac
     1201 aagctcaagg cggcgctcgg ccgcctcgcc cgaggcacca tcgaggacgt gctcgcggct
     1261 gtcggccggg gcgagatgtt ctccggcgac gtggtgcgtg ccgtctaccc ggagtaccgg
     1321 gaggctcgcg cggtcagcga accgaacggc gcaggggacg gcggccgcaa gggcaacggc
     1381 gcggacggcg agccgcgcgg catcccgatc cgcggcctca acgccgacct gcccgtgcgc
     1441 ttcgctccgg acggcggcgc cattccgggc gaccgcatcg tcggcatcat gacgccggga
     1501 caaggcgtca cgatctaccc gatccaatcg ccggcgcttg cagccttcga taacgagccc
     1561 gaccgctgga tcgacgtgcg ctgggacatc gaccctgccg atccccagcg ctttccggct
     1621 cggctcgcct tgcagtcgat caacgagccc ggcaccctcg cccagatcgc gcaagtggtc
     1681 gccgaccacg acggcaacat cgacaacgtt tcgatgaagc gccgcaccca ggacttcacc
     1741 gacatgaccc tcgacctcgc cgtctgggac gtgaagcacc tcaacgcgat catcgcggag
     1801 ctgcgcgcca agcaagtggt cagcaaggtc gagcgcgtca ccgggtaggc ggcgccaccc
     1861 gaccatcgtg agttttgcaa gacgttccgc gccgagtggg ggacgcataa tgacgggttg
     1921 cagtcatcgt cgacccgaac tcaaagtgac ccggcgcgct attacaatct aaagatgctt
     1981 ggactgcgct caatgcggaa attatgtgct ccgcgtcagt g
//
LOCUS       DASQWN010000074         2126 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_403990, whole genome shotgun sequence.
ACCESSION   DASQWN010000074 DASQWN010000000
VERSION     DASQWN010000074.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2126)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2126)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2126
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_403990"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..892
                     /locus_tag="VE686_01405"
     CDS             <1..892
                     /locus_tag="VE686_01405"
                     /inference="COORDINATES: protein motif:HMM:NF033545.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="IS630 family transposase"
                     /protein_id="HYY83138.1"
                     /translation="RSRLSPHRRPSPLCAKIAAALRDAVCAAQRRAAAPPVEGADPAP
                     RFTLKRLVAFVRERFGRLYCRETIRTALHRRKLSWKKAKKLLGRADPERRQAFIEQLQ
                     SVLDGAQRDQHLLVYLDEAHIHQDADLGYGWAERGQRFFVASSSPGLSARVSFYGLYL
                     YNEGQVRLWAFPRANGDHTIAVLRRLRAEVPERKLIVLWDGAPYHRAQAVREVARTLG
                     IELMPLPGYSPDLMPVEALWHWLREDVPYHHCHASAEDLTRRVGDFEARLNRDPFVIA
                     DRLWVKNTLDPEEEKLRFSK"
     gene            complement(920..2059)
                     /locus_tag="VE686_01410"
     CDS             complement(920..2059)
                     /locus_tag="VE686_01410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011239024.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IS630 family transposase"
                     /protein_id="HYY83139.1"
                     /translation="MTIRYRVDLSEVERIELQTLLRGGRHAARTLKRAQILLAVDAGM
                     PDETIAQSLGVGGSTVYRTKRRFVEGNLDKALHEEPRPGATRKLSAQEEALLVATACS
                     RPPEGRARWTVELLAGEIVRLTEHDSLSRETVRRRLAENELKPWREKMWCVPKVDGEY
                     VARMEDVLDLYAGAPDPQRPVVCFDESPTQLIGEVRQPIPAAPGQPARYDYEYRRCGT
                     VNLFVVMDVHRPWRRVRATEQRTAQDYAARLRELVDVDYPDAARIRVVQDNLSTHTPG
                     ALYEAFPAPEAHRILERLEFHYTPKHASWLNMVEIEIGVLKGQCLDRRIDHPEELARE
                     ITAWQRRRNAAGARVTWMFTTEKARAKMGRAYPKPATKLEPANQS"
BASE COUNT          314 a          727 c          718 g          367 t
ORIGIN      
        1 acgctctcgt ctttcgccgc accggcggcc gtcccccctt tgcgcgaaga tcgcagcggc
       61 gcttcgtgat gccgtctgcg ccgcccagcg cagggcagcc gctccgcccg tagaaggcgc
      121 cgacccggcg ccccgcttca cactcaagcg gctggtggcg tttgtgcgcg agcgcttcgg
      181 ccgcctctac tgccgtgaga cgatccgcac agccctgcac cgccgcaagc tgtcgtggaa
      241 gaaagccaag aagctgctgg ggcgggccga cccggagcgg cgacaagcgt tcatcgagca
      301 actccagagc gtgctggatg gcgcccagcg cgatcaacat ctgctggtct atctggatga
      361 ggcccacatc caccaggatg cggatctcgg ctatggctgg gccgagcgcg gccagcgctt
      421 ctttgtcgcc tcaagctcgc cgggcctgtc ggcaagagtc tccttctacg ggctgtatct
      481 ctacaacgag gggcaggtgc ggctgtgggc tttcccgcgg gccaatggcg accacacgat
      541 cgcggtgctg cgccggctcc gcgccgaggt tcccgagcgt aagctgatcg tgctctggga
      601 cggcgcgccg tatcaccggg cccaggccgt ccgggaggtc gcccgcacgc tgggcatcga
      661 actcatgccc ctgccgggct acagccctga tctgatgccg gtcgaggcgc tttggcactg
      721 gttgcgcgag gacgtcccct atcatcactg ccatgccagc gccgaggacc tcacccggcg
      781 ggtcggggac ttcgaggcgc gcctgaaccg agaccccttc gtcatcgccg accgcctctg
      841 ggtcaaaaac accctcgacc ccgaggagga gaaactgcgc ttctcaaagt agatggggta
      901 tagttcctcg acacagtggt tatgattggt tggcgggctc gagcttggtg gccggtttgg
      961 ggtaggcgcg gcccattttg gcgcgggcct tctcggtcgt gaacatccat gtcacgcgtg
     1021 cgccggcggc gttgcgccgg cgctgccagg cggtgatctc gcgcgcgagt tcctcgggat
     1081 gatcgatgcg ccggtccagg cactggccct tgagcacccc gatttcgatc tcgaccatgt
     1141 tgagccaact cgcgtgcttg ggggtgtagt ggaactcgag ccgctccagg atgcgatgcg
     1201 cttccggggc cggaaaggcc tcgtagagcg cgccgggcgt gtgcgtggac aggttgtctt
     1261 gcaccacccg gatgcgcgcg gcgtcaggat agtccacgtc caccaactcg cgcagacgcg
     1321 ccgcatagtc ctgcgctgtg cgctgctcgg tggccctcac ccggcgccag ggccggtgca
     1381 cgtccatgac gacgaacagg ttcacggtgc cgcagcgccg gtactcgtaa tcatagcgcg
     1441 ccggctgccc cggcgcggcc gggatcggct ggcggacctc gccgatcagc tgcgttgggc
     1501 tctcgtcaaa gcaaaccacc ggccgctgcg gatccggcgc cccggcatag agatcgagca
     1561 cgtcctccat gcgggccacg tactcgccat cgaccttcgg cacgcaccac atcttctcgc
     1621 gccagggttt gagctcgttc tcggccaggc gccggcgcac cgtctcgcgc gagagactgt
     1681 cgtgctcggt caggcgcacg atctcgccgg cgagcagttc gacggtccac cgcgcccggc
     1741 cctcgggcgg gcgggagcag gcggtcgcga ccagcagcgc ttcctcctgg gcggagagct
     1801 tgcgggtggc cccggggcgg ggctcctcgt gcagggcctt gtcgagatta ccctccacga
     1861 agcggcgctt ggtccggtag acggtcgagc cgcccacgcc gaggctctgg gcaatggtct
     1921 cgtccggcat cccggcatcg accgcgagca ggatctgggc gcgcttgagc gtgcgggccg
     1981 catgccgccc accgcggagc agggtttgga gctcgatacg ctcgacttcg ctcaggtcga
     2041 cccggtagcg tatggtcatc gtgcctctcc gttaccagag gcgccgatat aatgacacgc
     2101 gaggtggtga ctatccgacc tgacac
//
LOCUS       DASQWN010000075         2378 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_609922, whole genome shotgun sequence.
ACCESSION   DASQWN010000075 DASQWN010000000
VERSION     DASQWN010000075.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2378)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2378)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2378
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_609922"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..212)
                     /locus_tag="VE686_01415"
     CDS             complement(<1..212)
                     /locus_tag="VE686_01415"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY83140.1"
                     /translation="MLDAVLVLPRLADALDEVVTNTGRLVHISADLHRVARNTDYLTA
                     IANHTDRLVDNTLVLPRTHSELIVMRA"
     gene            complement(490..870)
                     /locus_tag="VE686_01420"
     CDS             complement(490..870)
                     /locus_tag="VE686_01420"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY83141.1"
                     /translation="MRRAHQVLCYVILALGVLQFLWIGLATLGRADEPGFPLHVLGGY
                     LMTLLALIAVVLAAVGRREGLGWSAALLGVMVLQILLVRLTEMVALLGALHPVNALVV
                     LFFAATAARGGPMGRRQHAAEAGT"
     gene            complement(1059..1922)
                     /locus_tag="VE686_01425"
     CDS             complement(1059..1922)
                     /locus_tag="VE686_01425"
                     /inference="COORDINATES: protein motif:HMM:NF037170.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HYY83142.1"
                     /translation="MPDRNGYPPGVPCWTDTAQPNPAAAGDFYRLLFGWEIEETMPPD
                     SEGSYLMARIRGRDVTAISSPPPSAPPMATWNTYVCVDSADETAASVRDAGGQIVAEP
                     FDVLDAGRMAVFADPEGAILCLWQPQQHQGAQVINEHGAVNFNGLNTRDIEGAKAFYG
                     AVFGWELLELGPGNAMWRLPGYGDHLEERSPGLRENMVAMGAPSGFEDVVATLNGIAE
                     DQDEVPPHWNVVFGVDDADATAARATELGAELVVPPMDAPWVRMTVIRDAQGATFLAN
                     QYVPENSGLGA"
     gene            2073..2360
                     /locus_tag="VE686_01430"
     CDS             2073..2360
                     /locus_tag="VE686_01430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015665024.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2277 domain-containing protein"
                     /protein_id="HYY83143.1"
                     /translation="MCRNIRTLHNFDPPASEKEIRSAALQYVRKVGGASKPSQANREA
                     YERAVDAVADATRRLLDELVTSAPPKDREAEAAKARARSLERYGAPKAVAS"
BASE COUNT          354 a          819 c          849 g          356 t
ORIGIN      
        1 gcccgcatca cgatgagctc ggagtgagtc cgcgggagga cgagcgtgtt gtcgacgagg
       61 cggtcagtgt ggttggcgat cgccgtcagg tagtcggtgt tgcgcgcgac gcggtggagg
      121 tccgccgaga tgtgcacgag gcggccggtg ttcgtgacca cctcgtcgag cgcgtccgcg
      181 agccgcggga gaaccagaac cgcgtccagc acgcgggggg ccttggtcag gctgcgccgg
      241 atacctcgga acaccgggcg gaggggccgg ttgaggcgca gcaggccgcg agatcgccgc
      301 cgccgggcgc aaaggcgatg ctctcacgag cagctcattc tgcttcgggg cccgcgggct
      361 cgcggcaagg caattacgat agcgtcggac gatgttccat cggacgatgt cattgtccgg
      421 ctccgtctga gcggttctca gctgcgtcgg cgggcggtcg ccggacgcgc ctgcgaacgg
      481 aggaatttcc taggtcccgg cctctgccgc gtgctgccgc cgccccatcg gcccccctcg
      541 cgcggccgtc gccgcgaaga agaggacgac gagcgcgttg acgggatgaa gggcaccgag
      601 cagggcgacc atctcggtga ggcggacgag aaggatctgc agaaccatga ccccgagcag
      661 cgcggccgac cacccgagac cttctcgccg accgaccgcc gcgaggacga cggcgatgag
      721 cgcgagcagc gtcatcaggt agccaccgag tacgtggagc gggaagccgg gctcgtcggc
      781 gcggccgagc gtggcgaggc cgatccagag gaactggagc acccccaggg cgaggatgac
      841 gtagcagagc acctgatgag cgcgacgcat ggatctcctt ctcgggtgtg atcggctgct
      901 ggacagaggc ggactcgcgg gcgcttcaag ctatcgggcg cgccgggcgt tgcgcacgcg
      961 gatcgccggt cgcagcgact acgcgtgggc gaagtccgca cccggggttg ttcgatctca
     1021 gacgtcgcgg ccgaccggcc gcctcggcgg agccggcctc aggcgcccag gccgctgttc
     1081 tccggcacgt actgattggc gaggaacgtt gcgccctgcg cgtcgcggat gacggtcatt
     1141 ctcacccagg gcgcgtccat cggcggcacc acgagctcgg cgccgagctc cgtcgcgcgc
     1201 gcggccgtcg cgtcggcgtc gtcgacgccg aagaccacgt tccagtgcgg cgggacctcg
     1261 tcctggtcct cggcgatccc gttgagcgtc gccaccacgt cctcgaagcc cgacggcgcg
     1321 cccatcgcga ccatgttctc gcgcaggccg gggctccgct cctcgaggtg atcgccgtaa
     1381 cccgggagcc gccacatggc gttgccgggg ccgagctcga gcagctccca gccgaagacg
     1441 gcgccgtaga aggccttcgc tccctcgatg tcgcgggtgt tgaggccgtt gaagttgacg
     1501 gcgccgtgct cgttgatgac ttgtgcgccc tgatgctgct gtggctgcca taggcagagg
     1561 atcgctccct cgggatccgc gaagaccgcc atccgccctg cgtccagcac gtcgaagggc
     1621 tcggcgacga tttgaccgcc cgcgtcgcgg acactggcgg cggtctcgtc ggcgctgtcg
     1681 acgcagacgt aggtgttcca ggtcgccatt ggaggcgcgc ttggtggtgg cgagctgatc
     1741 gcggtcacgt cccggccgcg gatgcgcgcc atcaggtagc tcccctccga gtccgggggc
     1801 atcgtctcct cgatctccca cccgaagagg aggcggtaga agtcgcccgc cgccgccgga
     1861 ttaggctgcg ccgtatcggt ccagcagggg actccgggtg ggtatccgtt gcggtcaggc
     1921 actggcgctc ccctcgacgc gccgcgggcg cgtcttccgg tggctgtcgt ctcgccgcga
     1981 agcctacgag ctcgcgtccg cccgcgctcc gacggccggc cctacgcgtg aggttcaggc
     2041 tctcgtcgtc ttactcctcg taacatggcg gcatgtgtcg aaacatccgc accctccaca
     2101 actttgaccc gcccgcctcg gagaaggaaa tccgctccgc cgcgcttcag tacgtacgca
     2161 aggtcggtgg cgcgagcaag ccctctcaag ccaaccggga ggcctacgag agagccgtcg
     2221 acgccgtcgc cgacgccacc cgtcgactcc tcgacgagct cgtgacctcg gccccgccca
     2281 aggaccgcga ggcggaggcg gccaaggccc gggcgcgcag cctcgagcgc tacggcgctc
     2341 cgaaggcggt cgcctcgtag gacgccacgt gcccagcg
//
LOCUS       DASQWN010000076         3301 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1403964, whole genome shotgun sequence.
ACCESSION   DASQWN010000076 DASQWN010000000
VERSION     DASQWN010000076.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 3301)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3301)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3301
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1403964"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..387)
                     /locus_tag="VE686_01435"
     CDS             complement(<1..387)
                     /locus_tag="VE686_01435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006611404.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HYY83144.1"
                     /translation="MYKERFDLTGRNALVTGGGRAIGLASAEALAEAGARVVIADYDA
                     EVAQSGLAYLEAKGYAAEVVILDVTDSGAVDETAARFARDGRAVDILVCNAGIARSGT
                     PAEQVTDEHWRNVLDVNLNAVFWCCRS"
     gene            complement(432..1193)
                     /locus_tag="VE686_01440"
     CDS             complement(432..1193)
                     /locus_tag="VE686_01440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018428631.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HYY83145.1"
                     /translation="MNLHAIRAVYTFEMARTWRTLLQSIVSPVISTSLYFVVFGAAIG
                     SRISEIDGVAYGAFIVPGLIMLSLLTQSIANASFGIYFPRFTGTIYEILSAPISGLEI
                     VVAYVGAAATKSILLGLIILATAALFVPLRIEHPLWMLLFLVLTAVTFSLFGFIVGLW
                     ADGFEKLQVIPLLVVTPLTFLGGSFYSIHMLPPFWQTVTLFNPVVYLVSGFRWSFYGT
                     ADVSLVVSLAMTVMFLVACLAVVTWMFKTGYRLKA"
     gene            complement(1190..2116)
                     /locus_tag="VE686_01445"
     CDS             complement(1190..2116)
                     /locus_tag="VE686_01445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008836016.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HYY83146.1"
                     /translation="MQPVISVSNLSKTYASGFQALKHIDLEIRRGEIFALLGPNGAGK
                     TTLISIVCGIVNATEGTVTADGHDIVADYRAARSKIGLVPQELTTDAFESVWDTVSFS
                     RGLFGKARNPAHIEKVLKDLSLWDKRTDKIRTLSGGMKRRVMIAKALSHEPEILFLDE
                     PTAGVDVELRRDMWRMVQGLRRAGTTIILTTHYLEEAEEMADRVGVMSHGEIILVEDK
                     AEVMRKLGEKRLRLQLQHPLDAVPSALGAYGLTLADSGAELVYTYDTRAERTGITSLL
                     QDLARAQVTFKDLQTEQSSLEEIFVKLVSKRP"
     gene            2212..2757
                     /locus_tag="VE686_01450"
     CDS             2212..2757
                     /locus_tag="VE686_01450"
                     /EC_number="2.1.1.63"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015688815.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003908 -
                     methylated-DNA-[protein]-cysteine S-methyltransferase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methylated-DNA--[protein]-cysteine
                     S-methyltransferase"
                     /protein_id="HYY83147.1"
                     /translation="MTDHGFALFETAVGLCGVAWGRDGILGVQLPEGDATRTRARLRR
                     RFPDAREAEPPDSVRAAIAAIQALLAGEPRDLSEVALDWTGVGAFERRVYEVARAIPP
                     GATLTYGEVAARIGETALAARDVGQALGRNPFPIVVPCHRVIAAGGKSGGFSARGGAA
                     TKLKLLRIEGAEAAGPPTLFD"
     gene            complement(2761..3198)
                     /locus_tag="VE686_01455"
     CDS             complement(2761..3198)
                     /locus_tag="VE686_01455"
                     /EC_number="3.1.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012331582.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioesterase family protein"
                     /protein_id="HYY83148.1"
                     /translation="MPERPARLSRVALRHFRQIATRWIDNDVYGHVNNVIYYSYFDTV
                     VNGHLIEAGLLDIAKSPAIGLVVETGCTYFESVAFPDALEAGLAVETLGRSSVRYRIA
                     VFKAGADLAAAQGHFVHVYVERGTQRPVPIPDAHRRAFEALQL"
BASE COUNT          533 a         1102 c         1161 g          505 t
ORIGIN      
        1 agagcggcag caccagaaca ccgcgttgag gttgacgtcg aggacgttgc gccagtgctc
       61 gtccgtaacc tgctcggccg gcgttccgct gcgcgcgatg ccggcgttgc acacgaggat
      121 gtccaccgcg cggccgtccc gggcgaaacg cgccgcggtc tcgtcgaccg cgcccgagtc
      181 ggtcacgtcg aggatcacga cctcagcggc gtagcccttg gcctcgagat acgcgaggcc
      241 gctctgggcc acctcggcat cgtagtcggc gatgacgacg cgggcgcccg cctcggcgag
      301 cgcctccgcc gaggcgagcc cgatggccct gccgccgccg gtcacgaggg cattgcggcc
      361 ggtgagatcg aaacgctcct tgtacatccg ctcctcccct tcacgcccag gtcaccgcgc
      421 ggccggcgca ctcaagcctt gaggcggtat cccgtcttga acatccaggt gaccacggcg
      481 aggcacgcca cgaggaacat caccgtcatg gcgaggctca ccacgaggct gacgtcggcg
      541 gtgccgtaga agctccagcg gaagccgctg acgaggtaca ccaccgggtt gaacagcgtg
      601 acggtctgcc agaagggcgg cagcatgtgg atcgagtaga agctgccgcc gaggaaggtg
      661 agcggggtca ccacgaggag cgggatgacc tgcagctttt cgaagccgtc ggcccacagg
      721 ccgacgatga agccgaacag gctgaacgtc accgccgtga gcaccaggaa aagcagcatc
      781 cagagcggat gctcgatccg cagcggcacg aacagcgcag cagtcgccag gatgatgagg
      841 ccgagcagga tcgacttcgt cgccgccgcg cccacgtagg cgacgacgat ctcgagcccg
      901 gagatgggag ccgagaggat ctcgtagatg gtgcccgtga agcgtgggaa gtagatgccg
      961 aacgaggcgt tggcgatgct ctgcgtcagg agcgacagca tgatcagccc cggcacgatg
     1021 aaggcgccgt acgcgacccc gtcgatctcg ctgatgcgcg acccgatggc ggcgccgaag
     1081 accacgaagt acaaggacgt cgagatcacc ggcgacacga tgctctgcag gagcgtgcgc
     1141 caggtgcggg ccatctcgaa ggtgtacacg gcgcggatcg catgcaggtt catggccgct
     1201 tgctcacgag cttgacgaaa atctcctcga gcgagctctg ctccgtctgc aggtccttga
     1261 aggtcacttg cgcacgcgcg aggtcctgca aaaggctggt gatgcccgtg cgctcggccc
     1321 gtgtgtcgta ggtgtagacg agctccgccc cgctgtcggc gagggtcagg ccgtaggcgc
     1381 caagggcgga gggcacggcg tcgagcggat gctgcagctg caggcgcagg cgcttctcgc
     1441 cgagcttgcg catgacctcg gccttgtcct cgacgaggat gatctcgccg tggctcatca
     1501 cgccgacgcg gtccgccatc tcctcggctt cctcgaggta gtgcgtggtg aggatgatgg
     1561 tggtgccggc ccgccgcagc ccctgcacca tgcgccacat gtcgcgccgc agctccacgt
     1621 cgacgccggc cgtcggctcg tcgaggaaga ggatctcggg ctcgtgcgac agggccttgg
     1681 cgatcatcac gcggcgcttc atcccgccgg acagcgtccg gatcttgtcc gtccgcttgt
     1741 cccataggga gaggtccttc aggaccttct cgatgtgcgc cgggttgcgg gccttgccga
     1801 aaaggccgcg gctgaagctc acggtgtccc acaccgattc gaaggcgtcg gtcgtcagct
     1861 cctgcgggac gaggccgatc ttcgagcggg cggcgcggta gtccgcgacg atgtcgtggc
     1921 cgtccgccgt gacggtccct tccgtcgcgt tgacgatgcc gcagacgatg ctgatcagcg
     1981 tcgtcttgcc ggcgccgttg gggccgagga gcgcgaagat ctcgccgcgg cggatctcga
     2041 ggtcgatgtg cttgagggcc tggaacccgg acgcgtaggt cttggacagg ttcgagacgg
     2101 agatgacggg ctgcatgcgg ggctccaagt ctcacacttc cgccgcgagg ccaacctgcc
     2161 gaccgcagct ttcgggtgcc gctgcggcac cgtccgcgct aggatgggcc catgacggat
     2221 cacggctttg ccctgttcga gacggcggtc ggcctctgtg gcgtcgcctg gggtcgcgac
     2281 ggcattttgg gcgtgcagct tccggaagga gacgcgacgc gcacgcgcgc gcgcttacgc
     2341 cggcgcttcc cggacgcgcg cgaggcggag ccgcccgact ccgtgcgggc ggccatcgct
     2401 gccatccagg cgcttctcgc gggcgagccg cgcgacctct ccgaggtggc gctcgactgg
     2461 acgggcgtcg gcgccttcga gcgccgcgtc tacgaggtcg cccgggcgat tccgccaggc
     2521 gcgaccctca cctacggcga ggtggcggca cggatcggcg agactgctct cgcggcgcgc
     2581 gacgtcggcc aggcgctcgg gcgcaacccc ttcccgattg tagtgccgtg ccaccgcgtc
     2641 atcgcggccg gcggcaagtc cggcggcttc tcggcccgcg gcggcgccgc caccaagctc
     2701 aagctcctgc gcatcgaggg cgccgaagcc gccggcccac cgaccctgtt cgactgacga
     2761 ctacagctgc agcgcctcga aggcgcggcg gtgggcgtcg gggatgggga cggggcgctg
     2821 ggtgccgcgc tcgacgtaga cgtggacgaa gtggccctgc gccgcggcga gatcggctcc
     2881 cgccttgaag acggcaatgc ggtagcgcac cgacgagcgt ccgagggtct cgacggcgag
     2941 tcccgcctcg agcgcatccg ggaacgcgac gctctcgaaa taggtgcagc ccgtctcgac
     3001 cacgaggccg atggccgggc ttttggcgat gtcgaggagg cccgcctcga taaggtggcc
     3061 gttcaccacc gtatcaaagt acgaataata gatcacgttg ttcacgtggc cgtacacgtc
     3121 gttatcaatc caccgcgtcg cgatctgccg gaagtgccgc aacgcaacgc gggacaggcg
     3181 ggcgggacgc tccggcatcg ctccggcgcc gctagccgcg cagtacctcg atggcatcga
     3241 ccttgtcggg gtagaacgcg acgtggccgg cgatctcacg cacccccgga agcggctgct
     3301 c
//
LOCUS       DASQWN010000077         2993 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_709114, whole genome shotgun sequence.
ACCESSION   DASQWN010000077 DASQWN010000000
VERSION     DASQWN010000077.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2993)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2993)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2993
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_709114"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1130
                     /locus_tag="VE686_01460"
     CDS             <1..1130
                     /locus_tag="VE686_01460"
                     /EC_number="3.5.3.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019403520.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016810 - hydrolase activity, acting on
                     carbon-nitrogen (but not peptide) bonds [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="formimidoylglutamate deiminase"
                     /protein_id="HYY83149.1"
                     /translation="FWTWREVMYRFLDRLDPDAVEAIAAWAFAEMLEAGFTAVGEFHY
                     LHHAPDGRPYANVAETAERIAAAAQATGIGLTLLAVLYAQGNFGGAPPNLGQRRFLNT
                     RDGFERLVEASAAAVVDVPDAALGIAPHSLRAVTLDDLRWVVQRWPDGPMHIHVSEQV
                     KEVEDCVAAHGRRPVELLYDTVAINGRWCLIHATHAEAEEVASIAASGAVAGLCPVTE
                     ANLGDGVFDTLTFLDRGGRFGVGSDSLIRVSAAEELRALEYAQRLRHRSRNALGRAGV
                     STGRRLFERALAGGAQALGRRIGGLAPGHRADIVALDGEHPSLAAARGDVILDGWIFS
                     ADNAAVRDVWCGGEHVVSAGRHRARDALLARYRDTLRSLQA"
     gene            complement(1121..2101)
                     /locus_tag="VE686_01465"
     CDS             complement(1121..2101)
                     /locus_tag="VE686_01465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009208618.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF808 domain-containing protein"
                     /protein_id="HYY83150.1"
                     /translation="MSIGLIAILDDIASLAKVAAASIDDIAGQAAKAGAKAAGVVIDD
                     AAVTPRYVVGFSAARELPIVGRIAVGSLRNKLLILLPAALALSVVAPWAITPLLMLGG
                     AYLCYEGTEKVFEAVLPHKAYAHELALPPVAVNAQTLEDEKVASAIKTDFILSAEIMA
                     IALAAIPEGNFATRAFVLGVVAVGITAAVYGGVALIVKADDAGVALARNTSTSALGKL
                     SRAFGKGLVMGMPVLLVLLSIVGTAAMIWVGGGIIVHGLEEFGWPWAGHVIHAAAESA
                     AHALAPVGGAAAAGSGVVGLLVGGALIPIVGYVLAPAWKAVRRPSAKTHA"
     gene            2584..2850
                     /locus_tag="VE686_01470"
     CDS             2584..2850
                     /locus_tag="VE686_01470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003604581.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY83151.1"
                     /translation="MAVTLQPVLVETGSRDEEGRLVFVDGRLVAVLVLLSDAHEDVAG
                     HWFLEHGFGRLHAHLTFPGLGAATAWIAEQCRRRTDLADGGRSP"
     gene            2847..2978
                     /locus_tag="VE686_01475"
     CDS             2847..2978
                     /locus_tag="VE686_01475"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY83152.1"
                     /translation="MTRDIGEVLVRHLGLFGSLSDGDKDALLSVEGKVRDLEPARTS"
BASE COUNT          433 a         1065 c         1044 g          451 t
ORIGIN      
        1 gcttctggac ctggcgcgag gtcatgtacc gcttcctcga ccgcctcgac ccggacgccg
       61 tcgaggccat cgccgcctgg gccttcgccg agatgctgga ggccggcttc acggccgtcg
      121 gcgagttcca ctacctgcac cacgcccccg acgggcgccc ctacgccaac gtggccgaga
      181 cagcggagcg catcgccgcc gccgcgcagg cgaccggcat cgggctcacc ctgctggcgg
      241 tgctctatgc gcaaggcaat ttcggcggcg ccccgccgaa tctgggccag cgccgcttcc
      301 tcaacacgcg cgacggtttc gagcgcctcg tcgaggcgag cgcggcggcg gtcgtggacg
      361 ttcccgatgc ggcgctcggc atcgcgccgc attccctgcg cgccgtcacc ctcgatgacc
      421 tgcgctgggt ggtccaacgt tggccagatg gccccatgca catccacgtc tccgagcagg
      481 tgaaggaggt cgaggactgc gtcgccgcgc acggacgtcg gcccgtcgag ctcctgtacg
      541 acactgtcgc catcaatggc cgctggtgcc tgatccatgc gacccacgcc gaagcggagg
      601 aggtcgcgtc catcgcggcc tcgggggcgg tcgccggcct gtgcccggtg acggaggcaa
      661 acctcggcga cggcgtgttc gacacgctca ccttcctcga ccggggcggg cgtttcggcg
      721 tcggttcgga ttcgctcatc cgcgtctcgg ccgcggagga gctgcgcgcg ctcgagtacg
      781 cgcagcgtct gcgccaccgc agccgcaacg cgctggggcg ggccggtgtc tcgacgggcc
      841 gccggctgtt cgagcgtgcg ctcgccggcg gcgcgcaggc cctcgggcgg cgcatcggcg
      901 gccttgcgcc cgggcatcgc gccgacatcg ttgcgctcga cggcgagcat ccctcgctcg
      961 ccgccgcgcg cggggatgtg atcctcgacg ggtggatctt ctcggccgac aacgccgccg
     1021 tacgcgacgt gtggtgcggc ggcgagcacg tcgtcagcgc gggccggcac cgcgcccgcg
     1081 atgccctcct cgcccgctac cgcgacaccc ttcgcagcct tcaggcgtga gtcttcgccg
     1141 acgggcgacg aaccgccttc caggccggcg ccagcacgta gccgacgatg gggatgagag
     1201 cgccgccgac caacaggccc accaccccgg atccggccgc ggcggcgccg ccgaccgggg
     1261 ctagcgcgtg agcggcgctc tcggcggccg cgtgaatgac gtggccggcc caaggccatc
     1321 cgaattcctc aagcccgtgc acgatgatgc cgccgccgac ccagatcatc gccgccgtgc
     1381 ccacgatgct cagcaggacg aggagcaccg gcatgcccat gaccagcccc tttccgaacg
     1441 cccgcgacag cttcccgagc gcggaagtcg aggtgttgcg ggcgagcgcg acgccggcat
     1501 cgtccgcctt cacaatgagc gccacgccgc catacacggc ggcggtgatg ccgaccgcga
     1561 ccacgcctag cacgaaggct cgcgtagcga agttgccctc cggtatcgcc gcgagcgcga
     1621 tcgccatgat ctcggcggag aggatgaaat cagtcttgat cgcgcttgcg accttctcgt
     1681 cttcgagggt ctgcgcgttg acggcgacgg gcgggagcgc cagctcgtgc gcatacgcct
     1741 tgtgtggaag gacggcctca aagaccttct cggtgccctc gtaacagaga taggcgccgc
     1801 ccagcatgag cagcggagtg atcgcccacg gcgcgacgac gctgagcgcc agcgccgccg
     1861 gcagcaggat caagagcttg ttgcgaagcg atccgacggc gatcctgccg acgatgggca
     1921 gttcgcgcgc ggccgagaag ccgacgacgt agcgcggagt cacggcagcg tcgtcgatga
     1981 cgacgccggc cgccttggca ccggccttgg cggcctggcc ggcgatgtcg tcgatggagg
     2041 ccgcggcgac cttggcgagg ctggcgatgt cgtcgaggat tgcgatcagt ccgatgctca
     2101 cgcgcgtccc tcgatgaagt atcgtaccgg aaatggcacg gctggaaccc gcgcacgctc
     2161 cggcgagttc ccgcacgccc ggagggtaga gacgatgctc tggtcgcttc gcgtcgcgac
     2221 gattgccggc acggtggtcc gcgtccacgt cacattcgtc ttattcctgg tgtggatcgc
     2281 cgccggccag tggcgcgctg gcggacggga ggcggccctc gaccattggg cttttcgtct
     2341 atctcgccgc gagcgccgaa gcccagcatg tcgcctttcc ggacggcacg cacgagctgt
     2401 cggtccgcaa ggccatggtc agcccgatcg acgcgacgag caggcgttgc gtccggtccc
     2461 ttgatgggag cccgttccgg ccagaagccg gccgcgagag cgctgacccg gcgctcgacg
     2521 cggtgcggaa cactgtaccg agcttgaggg ttagcgggca gcgcaaagcc cgtgagagac
     2581 agcgtggccg tcacactgca gccggtgctc gttgagaccg gctcccgcga cgaggaagga
     2641 cgcctcgtct tcgtcgatgg caggctcgtg gccgtgctgg tgcttctgtc cgacgcgcac
     2701 gaggacgtcg ccggtcactg gttcctggag cacggcttcg gccgcctcca cgcgcatctc
     2761 acctttcccg gcctgggcgc cgcgacggcg tggatcgccg agcagtgccg ccgccggacc
     2821 gacttggcag acggcgggag gtccccttga cccgcgacat tggcgaggtc ctcgttaggc
     2881 acctgggcct gttcggatcg ctgtccgacg gagacaagga cgctctcctg tccgtggagg
     2941 gcaaggttcg tgacctcgag ccggcgagga catcctgacc gacggcgagc gcc
//
LOCUS       DASQWN010000078         2136 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_801065, whole genome shotgun sequence.
ACCESSION   DASQWN010000078 DASQWN010000000
VERSION     DASQWN010000078.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2136)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2136)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2136
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_801065"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(63..446)
                     /gene="crcB"
                     /locus_tag="VE686_01480"
     CDS             complement(63..446)
                     /gene="crcB"
                     /locus_tag="VE686_01480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018390628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fluoride efflux transporter CrcB"
                     /protein_id="HYY83153.1"
                     /translation="MQSTLLVFLGAGIGGALRHGVNVGCARACGTAFPWGTLTVNVVG
                     SLAMGLIAGWLAFKTQAGWSQPVRLFLTTGILGGFTTFSAFSLDAVLLWERGAIGAAA
                     AYVGVSVAASIAALVAGLALVRAFA"
     gene            complement(452..>2136)
                     /gene="dnaE"
                     /locus_tag="VE686_01485"
     CDS             complement(452..>2136)
                     /gene="dnaE"
                     /locus_tag="VE686_01485"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012452924.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009360 - DNA polymerase III complex
                     [Evidence IEA];
                     GO_function: GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="DNA polymerase III subunit alpha"
                     /protein_id="HYY83154.1"
                     /translation="PLDDKRTYESLCRGEVVGVFQVESAGMRKALVEMEADRFEDLIA
                     LVALYRPGPMANIPVYCARKLGRDAEPPSGWYPHPKLEEILKETFGIIVYQEQVMEVA
                     KLLAGYSLGDADLLRRAMGKKIKSEMDAQRSRFVSGCVEGGIDKAKANEIFDLLAKFA
                     DYGFNKSHAAAYALISYHTAYLKANFPVEFLAASMTLDLDNTDKLGEFRREAQRLGIK
                     VEPPSINRSGVGFEVAYDGNGTGSIRYALAAVKGVGRQAIEGLLEARGDKPFVDLGDL
                     ARRLNPKLLNKRSLENLVAAGALDELEPDRARATAAIDAIMGLAQRAAEASTEGVLDM
                     FGGVAAAEVTLRVPPHEPWPAAVRLQKEYDAVGFFLSGHPLDEYGDLLKKLRVQTWVE
                     FCRSAKAGGAVGRVAATVLDRSERRTKSGNKMGIVMLSDQTGHFEAIVFAEGLQRYRD
                     ILEPGRALSLVLQAGVEGDEVRARIQIAEPLDEALAKHQKGMRIYLRDDRALVSVQER
                     LKVRGEGEVSLVLILDGGEREVEVKLRDRYQASPQIAGALRAVPGVVHVEMN"
BASE COUNT          325 a          761 c          732 g          318 t
ORIGIN      
        1 ccgcctcgtg gtccatcgtt tctcatgccg ccgctcgtaa cacccgcccc ggcgagcagc
       61 aatcaagcga aggcgcgcac cagcgccaag ccagcgacga gcgccgcgat cgaggccgcg
      121 accgacaccc cgacgtacgc ggccgccgcg ccgatcgccc cgcgctccca cagcagcacg
      181 gcgtcgagcg agaaggccga gaaggtggta aagccgccga gaatgccggt ggtgagaaag
      241 agccgcacgg gctggctcca cccggcctgc gtcttgaagg caagccagcc cgcgatgagg
      301 cccatcgcca gcgagccgac gacgttgacc gtgagcgtgc cccacgggaa cgccgtgccg
      361 cacgcccgcg cacagccgac gttcacgcca tggcgcaacg ccccgccgat gccggcgccg
      421 aggaagacga ggagggtgga ctgcactgtc gtcaattcat ctccacgtgc accacccctg
      481 gcacggcgcg gagcgcgccg gcgatctggg gcgatgcctg gtagcggtcg cgcagcttga
      541 cctcgacctc gcgctcgccg ccgtcgagga tgaggaccag ggagacctcc ccctcgccgc
      601 gcaccttcag ccgctcctga acgctcacca gcgcgcggtc gtcgcgcagg tagatgcgca
      661 tgcccttctg gtgcttggcg agggcttcgt cgaggggctc ggcgatctgg atgcgggcgc
      721 gcacctcatc gccctcgacg ccggcctgca ggacgaggga gagcgccctc cccggctcga
      781 ggatgtcgcg gtagcgctgc agcccttccg cgaagacgat ggcctcgaag tgcccggtct
      841 gatcggacag catgacgatg cccatcttgt tgccgctctt ggtgcggcgc tcggagcggt
      901 cgaggaccgt cgcagcgacg cgcccgacgg cgccgcccgc cttggccgag cggcagaact
      961 cgacccaggt ctgcacgcgc agcttcttca gaaggtcccc gtactcgtcg agcgggtgcc
     1021 ccgagaggaa gaacccgacg gcgtcgtatt ccttctgcag ccgcacggcc gccggccacg
     1081 gctcgtgcgg cggcacgcgc aaggtgacct ccgccgccgc gacgccgccg aacatgtcga
     1141 ggacgccctc cgtcgacgcc tcggcggcgc gctgggcgag gcccatgatg gcgtcgatgg
     1201 cggccgtcgc ccgcgcacgg tcgggctcga gctcgtccag ggcgccggcg gcaacgaggt
     1261 tctcgaggct gcgcttgttg aggagctttg ggttgagccg gcgcgccagg tcgccgagat
     1321 cgacgaacgg cttgtccccg cgggcctcga gcaggccctc gatggcctgg cggccgacgc
     1381 ccttcacggc cgccagcgcg tagcggatcg agccggtgcc gttcccgtcg tacgcgacct
     1441 cgaagccgac gcccgagcgg ttgatcgagg gcggctcgac cttgatgccg aggcgctgcg
     1501 cctcgcggcg gaattcgccg agcttgtcgg tgttgtcgag gtcgagcgtc atcgacgccg
     1561 ccaggaactc gacggggaag ttcgccttca ggtaggccgt atggtacgaa atcagcgcgt
     1621 aggcggcggc gtggctcttg ttgaagccgt agtcggcgaa cttggccaag aggtcgaaga
     1681 tctcgttcgc cttcgccttg tctatcccgc cttcgacgca gcccgagacg aagcgcgagc
     1741 gctgcgcgtc catctcggac ttgatcttct tgcccatggc gcggcgcagg aggtcggcgt
     1801 cgccgagcga gtagccggcg aggagcttcg ccacctccat cacctgctcc tggtagacga
     1861 tgatgccgaa ggtctccttg aggatctctt cgagcttcgg gtgcgggtac cagcccgacg
     1921 gcggctccgc gtcccgcccg agcttgcgcg cgcagtagac cgggatgttg gccatcggac
     1981 ccggccggta cagcgcgacg agggcgatga ggtcctcgaa gcggtccgcc tccatctcga
     2041 cgagcgcctt gcgcatgccc gccgattcca cctggaacac gccgaccacc tcgccgcggc
     2101 acaggctctc gtacgtcctc ttgtcgtcga gcggca
//
LOCUS       DASQWN010000079         2522 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_15446, whole genome shotgun sequence.
ACCESSION   DASQWN010000079 DASQWN010000000
VERSION     DASQWN010000079.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2522)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2522)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2522
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_15446"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..126)
                     /locus_tag="VE686_01490"
     CDS             complement(<1..126)
                     /locus_tag="VE686_01490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012779036.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyltransferase"
                     /protein_id="HYY83155.1"
                     /translation="MTELSLVLRPELPSDADAIERLHERAFGPGRFARTAFRIREG"
     gene            complement(270..761)
                     /locus_tag="VE686_01495"
     CDS             complement(270..761)
                     /locus_tag="VE686_01495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011662837.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX domain-containing protein"
                     /protein_id="HYY83156.1"
                     /translation="MGVDVNERREALRLRVLKRAAHVYWRFSRGMTLGVRGIVLDGGA
                     RVFLVRHTYTPGWHFPGGGVEVGETALTALTRELAEEARVEITGAPVLHGIFLNRAAS
                     QRDHVLTYVVRDFRVLEPKRPDGEIAEAGFFPLDGLPEATTRATRARLDEILSGRPPP
                     PVW"
     gene            998..1936
                     /locus_tag="VE686_01500"
     CDS             998..1936
                     /locus_tag="VE686_01500"
                     /EC_number="4.1.3.3"
                     /EC_number="4.2.1.41"
                     /EC_number="4.3.3.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015933868.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009436 - glyoxylate catabolic process
                     [Evidence IEA];
                     GO_process: GO:0071704 - organic substance metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrodipicolinate synthase family protein"
                     /protein_id="HYY83157.1"
                     /translation="MPLDASAQGVYVIAPTPFHDDGRIDEASTDRMVDFFGEAGCTGI
                     TVLGQMGEAPKLDHDEALSLTSHVIRRAGKMEVIVGVTAPGFAAMRALARSAMEAGAA
                     GVMIAPPTSLRTDDQIVTYYRQAAEAIGSDVPFVIQDYPLSFSVVMTPAVIRRIVLEN
                     ASCVMLKHEDWPGLEKISALRGFEHDGSMRPISILCGNGGLFLDFEMERGADGAMTGY
                     CFPDMLVDVVRLQKAGRRDEAHDLFDAHLPLIRYEQQPGAGLAVRKYVLKRRGILASE
                     AQRKPGGTLSPAARAEVDYLLSRLARADRRAERLAA"
     gene            complement(1944..>2522)
                     /locus_tag="VE686_01505"
     CDS             complement(1944..>2522)
                     /locus_tag="VE686_01505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012453618.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="allophanate hydrolase subunit 2 family protein"
                     /protein_id="HYY83158.1"
                     /translation="AAGDRLALNLDRPADSPDLALDPVALEPDAPVRVVLGPQDDLFT
                     PDGVATFASSTYAVTQEADRMGYRLAGPKVAHAQGYNIVSDGIVSGSVQVPGSGEPIV
                     MMADRQTTGGYPKIATVVSADLRVLAQRRPGQTVRFAVIGIGEAQDLARERARAIADL
                     ATAARPVRRGAFTSEELLALNLAGEAADAFGP"
BASE COUNT          386 a          899 c          883 g          354 t
ORIGIN      
        1 gccctcgcgg atgcgaaagg ccgtgcgcgc aaatcggccg gggccgaagg cacgctcgtg
       61 cagacgctcg atcgcgtcgg cgtcggacgg cagctcagga cgaagaacga gagagagttc
      121 ggtcacggcg ggacctcgcg cgcacgacag gggatggctg aaccgagatc agccgcgtcg
      181 tcgcagggtc ctcgaagtgt gcatcgccga tgtcgctttc ccgaatggcc aagcggcata
      241 gcagcgccgg cccgcccgcg caaacccgtt caccacaccg gcggcggcgg acggccggag
      301 aggatctcgt cgaggcgcgc ccgcgtggcg cgggtcgtcg cctcgggcag gccgtcgagc
      361 gggaagaagc cggcttccgc gatctcgccg tccgggcgct tcggctcgag cacgcggaag
      421 tcgcgcacca catacgtcag gacatggtcg cgctgcgacg cggcgcgatt gaggaagatt
      481 ccgtgcagga cgggcgcgcc ggtgatctcc acccgcgctt cctccgcgag ctcgcgggtg
      541 agcgcggtca gcgccgtctc gccgacctcg acgcctccgc ccgggaaatg ccagccgggc
      601 gtgtaggtat ggcggacgag gaacacgcgg gccccgccgt cgaggacgat gccgcgcacg
      661 ccgagcgtca tgccgcgcga aaagcgccag tacacgtgcg cggcgcgctt gagcacgcgc
      721 aagcgcagcg cttcgcgcct ctcgttcacg tctaccccca tcgtccgccc tcgcccgagt
      781 gggtccgtct agcacggccg ccgccgtccg cgggcgcggg tgtgcgccga tgatgatgat
      841 gggcgtgccc acttcaacaa aatccgctcc ctcgggcgat gatgatgatg cgcaatgaaa
      901 ttcccttgaa atcgggccgc cgatcgcggc aagacgtccg ggttgcgcgg gattggtttt
      961 ccaagctccg cgtaccgaca gcgcccgagg atccgccatg ccgctcgatg cttccgccca
     1021 aggcgtctac gtcatcgccc cgacgccctt ccacgacgac ggccggatcg acgaagcctc
     1081 cacggaccgc atggtcgact tcttcggcga ggccggctgc accggcatca cggtgctcgg
     1141 ccagatgggc gaggcgccga agctcgacca cgacgaggcc ctcagcctca cctcccacgt
     1201 gatccgccgg gccggcaaga tggaggtgat cgtcggggtc accgcgccag gctttgccgc
     1261 catgcgcgcg ctcgcgcgca gcgccatgga ggcgggcgcc gcgggcgtga tgatcgcgcc
     1321 gcccacgtcc ctgcgcaccg acgaccagat cgtcacctac tatcgccagg ctgccgaggc
     1381 gatcggctcg gacgttccgt tcgtgatcca ggactacccg ctctcgttca gcgtggtgat
     1441 gacaccggcc gtgatccgcc gcatcgtcct tgagaacgcg tcctgcgtca tgcttaagca
     1501 cgaggactgg cccgggctcg agaagatctc ggccctgcgc ggattcgagc acgacggctc
     1561 catgcgcccg atctcgatcc tgtgcggcaa cggcggcctc ttcctcgact tcgagatgga
     1621 gcgcggcgcc gacggcgcca tgacgggcta ctgcttcccc gacatgctcg tcgacgtggt
     1681 gcgcctgcag aaggccggcc gccgagacga ggcgcacgac ctcttcgacg cccatctgcc
     1741 gctgatccgc tacgagcagc agcccggcgc cggcctcgcc gtgcgcaaat acgtgctcaa
     1801 gcgccgtggc atcctcgcct ccgaggcgca gcgcaagccc ggtggcacgc tgtcacccgc
     1861 ggcgcgggca gaggtcgact acctcctctc ccgcctcgcc cgcgccgacc gccgcgccga
     1921 gcggctggcc gcgtaagcga acctcagggg ccgaatgcgt cggcagcctc gcccgcgagg
     1981 ttgagcgcga gaagctcttc cgaggtgaag gcgccgcggc ggactggccg ggcggcggtt
     2041 gccagatcag cgatggcgcg cgcgcgctcg cgggcgaggt cttgggcctc gccgatcccg
     2101 atcaccgcaa agcgcaccgt ctgtccgggc cggcgctggg cgaggacgcg gaggtcggcc
     2161 gaaacgacgg tcgcgatctt gggatacccg ccggtggtct gccggtccgc catcatgacg
     2221 atgggctcgc cggagccggg cacctgcacg gagccggaca cgatgccgtc ggaaacgatg
     2281 ttgtaaccct gggcatgcgc gaccttcggt ccggcgagcc ggtagcccat gcggtccgcc
     2341 tcctgcgtga cggcgtaggt cgacgacgcg aaggtcgcga ccccgtcggg cgtgaagagg
     2401 tcgtcctgcg gcccgagcac cacccgcacc ggcgcgtcgg gctcgagcgc aacgggatcg
     2461 agggcgaggt ccggactgtc ggcaggccgg tcgaggttca gggccaggcg gtcgccggcc
     2521 gc
//
LOCUS       DASQWN010000080         5715 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1305421, whole genome shotgun sequence.
ACCESSION   DASQWN010000080 DASQWN010000000
VERSION     DASQWN010000080.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 5715)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5715)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5715
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1305421"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..726)
                     /locus_tag="VE686_01510"
     CDS             complement(<1..726)
                     /locus_tag="VE686_01510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009490459.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ornithine cyclodeaminase family protein"
                     /protein_id="HYY83159.1"
                     /translation="MRVVTSAEIDRVLTFPALIDALAEAFRGDMVTPVRHHHEIERPG
                     AHGTLLLMPSWTGAAMQEGFIGVKIVSVFPENGARGLPSVMGSYLLMDGATGEPVSVL
                     DGARLTVWRTAAASALAARHLARDDASRMVMVGAGSLAPFLIRAHMSQRPIREVALWN
                     HNLEKAEVLAAELREKGLPVSAVADLETAVREADLVSCATLSNTPIVRGAWLKAGAHL
                     DLVGAFNLKMREADDEALRRAQVY"
     gene            complement(795..1148)
                     /locus_tag="VE686_01515"
     CDS             complement(795..1148)
                     /locus_tag="VE686_01515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009490461.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LapA family protein"
                     /protein_id="HYY83160.1"
                     /translation="MIRFLKALILLPIAILVVLLAVANRAPVTLSLDPFSQDAPEFAA
                     QLPLFAVIFAAVMLGVVIGGVASWLAQGKNRKSRRQLRRETRQLRYETERLKSQGAPA
                     TTLPATVPSAQSSRF"
     gene            complement(1189..1503)
                     /gene="ihfB"
                     /locus_tag="VE686_01520"
     CDS             complement(1189..1503)
                     /gene="ihfB"
                     /locus_tag="VE686_01520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012319412.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA];
                     GO_process: GO:0006417 - regulation of translation
                     [Evidence IEA];
                     GO_process: GO:0075713 - establishment of integrated
                     proviral latency [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="integration host factor subunit beta"
                     /protein_id="HYY83161.1"
                     /translation="MIKSELVLKIAEQNPHLYQRDVEKIVNAILDTIADALARGDRVE
                     LRGFGAFSVKKRDARTGRNPRTGASVSISEKVVPVFKTGKEMRQRLNAPAPKVLKAAA
                     AQ"
     gene            complement(1530..2495)
                     /gene="sppA"
                     /locus_tag="VE686_01525"
     CDS             complement(1530..2495)
                     /gene="sppA"
                     /locus_tag="VE686_01525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009490467.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004252 - serine-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0006465 - signal peptide processing
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptide peptidase SppA"
                     /protein_id="HYY83162.1"
                     /translation="MSIDAEAIADRRRLRRKLSFWRVAGFSGLIAAVAALGYAAADRA
                     GYGAIQSQIARISVDGVITGNQRLADLMQRVGDSSAVSGVVISINSPGGTTTGSEEIY
                     RNIRRLAEKKPVVTFVDGTAASGGYITAIATDYIVARETSLVGSIGVLFQYPDLSGLM
                     GQVGVKLEEVKSSPLKAEPSPFKPTSPEARAAMQAVVNDTYDWFKALVRDRRRLSEGE
                     LATASTGQVFSGRQGVPMKLVDKIGGERDAVAWLEQTKGVAKDLPIRDWKPSSDRDLS
                     IFAMSATVADLFGFERVAEALRRTSAHGQVAQLDGLLAVWQPLEK"
     gene            complement(2785..4482)
                     /gene="rpsA"
                     /locus_tag="VE686_01530"
     CDS             complement(2785..4482)
                     /gene="rpsA"
                     /locus_tag="VE686_01530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009490468.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S1"
                     /protein_id="HYY83163.1"
                     /translation="MSAALQQPSREDFAALLEESFRTNEISEGSVVKGKVVAIEKDVA
                     VIDIGAKTEGRVALKEFAGPNRDQTVVVGDEVEVYVERIENALGEAVISRDKARREES
                     WVKLEKAFEAGERVNGTIFNQVKGGYTVDLDDAVAFLPRSQVDIRPVRDVTPLMGVAQ
                     PFQILKMDRRRGNIVVSRRTVLEESRAEQRSELVANLEEGQVIDGVVKNITEYGAFVD
                     LGGIDGLLHVTDMAWRRVNHPSEVVTIGQTVKVKIIKINHETHRISLGIKQLLADPWE
                     GIAARYPVQAKLKGRVTNITDYGAFVELEPGIEGLIHVSEMSWTKKNVHPGKIISTSQ
                     EVEVVILEVDQVKRRISLGLKQTLQNPWEAFAEKHPVGSEVEGEVKNKTEFGLFIGLE
                     NDVDGMVHLSDLDWNRPGEQVIDDFKKGDIVRAQVLDVDVEKERISLGIKQLAGDPFA
                     EAGEIKKGQIVTCEVLEVKDGGLEVKIVDTDLSTFIKRNELARDRADQRPERFAAGEK
                     LDARVTQFDRKARRVTVSIKALEVAEEKEAMAQYGSADSGASLGDILGAALKAKDKK"
     gene            complement(4797..>5715)
                     /locus_tag="VE686_01535"
     CDS             complement(4797..>5715)
                     /locus_tag="VE686_01535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018457497.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="SMP-30/gluconolactonase/LRE family protein"
                     /protein_id="HYY83164.1"
                     /translation="WNAQGRYLVWSDIPNNRQMRWLEDDGRVSVFRMPSNNSNGNSFD
                     FQGRQLSCEHLTRRVVRYELDGSVTVLADSFEGKRLNSPNDVVAHPDGSYWFTDPPYG
                     GQLYEGAPDIQGGPSNAGGRLNPRLGQAAGIGSARRELPTNCYRVDPSGRVDLVVTED
                     QVPDPNGLCFSPDYKKLYVASTGKGPGDTGPGGKGDIHVFDVGTDNKLSNRRLFSDCT
                     IDGVKCGPDGLRCDVDGNLWASSNAGRAVGYSGVTVWTPEGKLMGRIRLPEVCGNICF
                     GGPKRNRLFMAASQSLYAVYVNTQGAGPG"
BASE COUNT          984 a         1817 c         1874 g         1040 t
ORIGIN      
        1 atagacttgg gcccggcgca gggcctcgtc gtcggcttcg cgcatcttga gattgaacgc
       61 gccgacgaga tcgagatgcg cccccgcctt cagccaggct cctcggacga tgggagtgtt
      121 cgaaagagtg gcgcaggaga cgagatcggc ttcgcgcacg gccgtttcca ggtccgcgac
      181 ggcgctgacc ggcaggccct tctcgcgcag ctcggcggca agcacctcgg ccttctccag
      241 attatggttc cagagcgcca cctcgcggat cggccgctgg ctcatatggg cgcggatcag
      301 aaaaggcgcg agggagcctg caccgaccat gaccatgcgg ctggcatcgt cgcgggcgag
      361 atggcgcgcg gcgagcgcag aggcggcggc ggtgcgccag acggtgaggc gcgcgccgtc
      421 gagaaccgac acgggctcgc ccgtggcgcc gtccatcagc agataggagc ccatcacgct
      481 cggaaggccc ctggcgccgt tctccggaaa gacggagacg atcttcacgc cgatgaagcc
      541 ttcctgcatg gcagcgccgg tccaggacgg catgagcagg agcgtgccgt gtgcgccggg
      601 tcgctcgatc tcgtggtgat ggcggaccgg cgtgaccata tcgccgcgaa aggcctcggc
      661 cagggcatcg atcagggcgg gaaacgtgag aacccgatcg atctcggcag aggtcacgac
      721 gcgcatggga gggtctcttc tgaggagcgc atcgttggtt gcgggaaacc ggagccgctt
      781 ttccgcacga tgcgttagaa cctggagctt tgagcggaag gaaccgtggc cggcagggtg
      841 gtggccgggg cgccctgcga tttgaggcgc tcggtctcat agcgcagctg ccgcgtctcg
      901 cgccgcagct ggcggcggga cttgcggttt ttgccctgcg cgagccagct tgccacgcca
      961 ccgatcacca caccgagcat gacggcggcg aagatcacgg cgaagagggg cagctgagcg
     1021 gcgaattccg gcgcatcctg cgagaacgga tccagcgaca gggtcaccgg agcgcggttc
     1081 gcgacggcga gcagaacgac caggatggca atcggcagga gaatgagcgc cttcagaaag
     1141 cgaatcacga acacctctca agaatgactt caaggatccc gtcaggaatc attgggcggc
     1201 cgcggccttg agcaccttcg gagccggagc attgagccgc tgacgcattt ccttgcccgt
     1261 cttgaagacg ggaacgacct tttcggagat ggaaacggat gcacccgtgc gcgggttgcg
     1321 ccccgtgcgg gcatcccgct tcttcaccga gaacgcgccg aagccgcgca gctcgacccg
     1381 gtcgcccctg gcgagggcgt cggcgatggt atcgaggatc gcgttcacga tcttctccac
     1441 gtcgcgctgg tagagatgcg ggttctgctc ggcgatcttg agcaccagtt cggatttgat
     1501 catggagtgg ctatatcttt gacgttgctt tatttttcca aaggttgcca gacagccagg
     1561 aggccgtcaa gttgcgcaac ctgcccatga gccgatgtcc tgcgcagcgc ctcggccacg
     1621 cgctcgaaac cgaagaggtc ggccacggtc gcgctcatgg cgaagatcga tagatcccga
     1681 tcgctgctcg gtttccagtc gcgaatcggc aggtccttgg ccacgccctt cgtctgctcg
     1741 agccaggcga ccgcatcccg ctcgccgccg atcttgtcga cgagcttcat gggcacgccc
     1801 tgacggccgc tgaacacctg accggtggag gcggtagcca actcgccctc gctgaggcga
     1861 cggcggtcgc gcaccagggc cttgaaccag tcgtaggtgt cgttgaccac cgcctgcatg
     1921 gcggcacggg cttccggcga tgtgggcttg aacgggctcg gctccgcctt gagcggcgag
     1981 gatttcacct cctccagctt cacgccgacc tggcccatga gtcccgacag gtcgggatat
     2041 tggaacagca ccccgatgga gcccacgagc gaggtctcgc gcgcgacgat gtaatcggtc
     2101 gcgatggccg tgatgtagcc gcccgaagcg gccgttccgt cgacgaaggt gacgacgggc
     2161 ttcttctcgg cgagcctgcg gatgttacga taaatctctt ccgagcccgt cgtggtgccg
     2221 ccggggctgt tgatggagat cacgacgccg gagaccgcgc tcgaatcgcc cacgcgctgc
     2281 atcaggtcgg cgaggcgctg gttgccggtg atcacgccgt cgacggatat gcgcgcgatc
     2341 tggctctgga tcgcaccata ccccgcccgg tccgcggcgg cgtagccgag ggcggcaacg
     2401 gccgcgatga ggcctgaaaa tcccgcaacg cgccagaagg agagcttgcg gcgcaggcgg
     2461 cggcggtcgg cgatggcttc ggcatcgatg gacatcgatt ggtctcttgc tggttccaaa
     2521 tcggatgaga agggctgcac cctagagcat cggaccggaa agtggaaacc acttttggga
     2581 tccgtccggc gctcgattcc tgaagtagcg catcgtcttg agcggaaaac cgggcgcgct
     2641 cttccgctca agacgatgcg agggcagata gggcggcaag cccgccggcc aacaaaaaac
     2701 ccgcgcgatg gctcgcacgg gttcccgaaa taaaaaatcc ccgggcttaa agcccgggga
     2761 tcatcaagtt ctcgtcgaac ccgattactt cttgtccttg gccttcaggg cggcgccgag
     2821 gatgtcgccg agcgacgcac ccgaatcggc cgagccgtac tgagccatgg cttccttctc
     2881 ctcagcgacc tcgagggcct tgatggagac ggtgacgcga cgggccttgc ggtcgaactg
     2941 cgtgacgcgg gcatcgagct tctcgccggc ggcgaagcgc tcggggcgct gatcggcgcg
     3001 gtcacgagcg agctcgttgc gcttgatgaa ggtggagagg tcggtgtcga cgatcttcac
     3061 ttccaggccg ccgtccttga cctcgagaac ctcgcaggtg acgatctggc ccttcttgat
     3121 ctcgccggct tcggcgaagg gatcgcccgc aagctgcttg atgccgagcg agatgcgctc
     3181 cttctcgacg tccacgtcga gaacctgagc acggacgatg tcgcccttct tgaagtcgtc
     3241 gatgacctgc tcgcccggac ggttccagtc gaggtccgag aggtggacca tgccgtcgac
     3301 gtcgttctcg agaccgatga acagaccgaa ctcggtcttg ttcttgacct cgccttcgac
     3361 ttcggagccg accgggtgct tctcggcgaa agcctcccac gggttctgaa gcgtctgctt
     3421 caggcccagc gagatgcggc gcttcacctg atcgacctcg aggatcacga cctcaacctc
     3481 ctgcgaggtg gagatgatct tgcccgggtg gacgttcttc ttcgtccagg acatctcgga
     3541 gacgtggatc aggccctcga tgccaggctc gagttcgacg aacgcaccgt aatcggtgat
     3601 gttcgtgacg cggcccttca gcttcgcctg gaccgggtag cgggcggcga tgccctccca
     3661 cggatcggcc agaagctgct tgatgcccag cgagatgcgg tgcgtctcgt ggttgatctt
     3721 gatgatcttc accttcaccg tctggccgat ggttacgacc tcggacggat gattgacgcg
     3781 gcgccatgcc atgtcggtga cgtgcagcag gccgtcgatg ccgccgagat caacgaacgc
     3841 accgtactcg gtgatgttct tgaccacgcc gtcgatgacc tgaccctctt cgaggttcgc
     3901 cacgagctcg gaacgctgct cggcgcggct ctcttcgagc acggtacggc gcgacaccac
     3961 gatgttgccg cggcggcggt ccatcttgag gatctggaac ggctgagcca cgcccatgag
     4021 cggggtgacg tcgcggaccg ggcggatgtc gacctgcgag cggggcagga acgccacggc
     4081 gtcgtcgagg tcgaccgtgt agccgccctt cacctggttg aagatcgtgc cgttgacgcg
     4141 ctcgccggcc tcgaaggcct tctcgagctt cacccacgac tcttcgcggc gggccttgtc
     4201 acgggagatg acggcctcgc ccagcgcatt ctcgatgcgc tcgacataga cctcgacctc
     4261 gtcaccgacg acgaccgtct ggtcgcggtt cgggccggca aattctttca gggcgacgcg
     4321 accttcggtc ttggcgccga tatcgatgac cgcgacgtcc ttttcgatcg cgaccacctt
     4381 gcccttcacg accgagcctt cgctgatctc gttcgtgcgg aaggattctt cgagcagggc
     4441 cgcgaaatct tcacggctcg gctgttgcaa agctgcagac ataggttctc ctgaatggcc
     4501 ctcgttcaaa ggggcaacgc cggcggctcg tgttaacggg ccgtttccag ccgccgctgc
     4561 ctgaggacgc cccttttagg gccatgtccg aggcatgccg ctcattgagc gggccggcgt
     4621 atcatcgacg gatggaaacg cttgtaccga caagactttt cgggacgcca caagggcgcg
     4681 gaacacgcac cctacgctta ataaaccgtc aatgtcttgt cggatggggg ttcttttatc
     4741 ccatgtggcc ccggatcaca aggctttcaa gccattcggc cggggcccgc atcacctcac
     4801 cccggacctg caccctgagt gttgacatag accgcgtaga gcgactggct ggcagccatg
     4861 aacagacggt tccgcttggg tcctccgaag cagatattgc cgcagacctc cggcaggcgg
     4921 atgcggccca tgagcttgcc ttccggggtc catacggtca cgccgctgta gccgacggcc
     4981 cggccggcat tgcttgaggc ccagaggttg ccatccacgt cgcagcgcag gccgtcgggg
     5041 ccgcatttca ccccgtcgat cgtgcagtcg gaaaacagcc gccggttcga aagcttgttg
     5101 tcggtgccga cgtcgaagac gtggatgtct cccttgccgc cggggcccgt atcgcccgga
     5161 cccttgcccg tgctcgccac atagagcttc ttgtagtccg gcgagaagca cagaccgttg
     5221 ggatcgggaa cctggtcctc cgtcaccacg aggtcgacgc ggccgctcgg atcgacacgg
     5281 tagcagttcg tcggcagctc ccgtcgcgcg ctgccgatgc cggcagcttg gccaagcctg
     5341 ggattgagcc gcccgccggc gttgctgggc ccgccctgaa tgtcgggcgc gccctcgtaa
     5401 agctggccgc catagggcgg gtcggtaaac cagtagctgc catcgggatg ggccaccacg
     5461 tcgttgggcg agttgaggcg cttcccctcg aacgaatcgg ccagcaccgt gaccgatccg
     5521 tcgagctcgt accggacgac ccgccgggtc agatgttcgc aggagagctg gcggccctgg
     5581 aagtcgaagc tgttgccgtt gctgttgttc gagggcatcc ggaacacgct cacgcggccg
     5641 tcgtcctcga gccagcgcat ttgccggttg ttcggaatgt cgctccagac gagatagcgc
     5701 ccctgggcgt tccag
//
LOCUS       DASQWN010000081         4245 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1007724, whole genome shotgun sequence.
ACCESSION   DASQWN010000081 DASQWN010000000
VERSION     DASQWN010000081.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 4245)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4245)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4245
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1007724"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..348
                     /locus_tag="VE686_01540"
     CDS             <1..348
                     /locus_tag="VE686_01540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015933945.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FkbM family methyltransferase"
                     /protein_id="HYY83165.1"
                     /translation="GELTMFVDARNRGESSVKIVGTNQAGTVRVPAKTLLELLVDEGF
                     SHVDAVKLDVEGAEDIILEPFLRDAPAALRPDLLIIEDGSQQWETDLPRLLEASGYRL
                     LTKTRLNFVYERA"
     gene            complement(367..681)
                     /locus_tag="VE686_01545"
     CDS             complement(367..681)
                     /locus_tag="VE686_01545"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY83166.1"
                     /translation="MLKACLIAPAVAVLLGGAVAAQQMRLPPSMSDTPAAAKPKAKAA
                     KPQASRSGPAASRSGSGVERSRQSTTLKPFDRRDIADPQSESRFQPQLTPGGGIGMGG
                     RF"
     gene            927..1865
                     /locus_tag="VE686_01550"
     CDS             927..1865
                     /locus_tag="VE686_01550"
                     /inference="COORDINATES: protein motif:HMM:NF012955.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HYY83167.1"
                     /translation="MAAVGAASASLNVAPAWAAAPLGGPSAPPAYQFKVGSFEVTSVF
                     DGAGRFPLQPGFVPDTPIEQVRSAFADAMRSTETVDNPYTPMIINTGQRLILVDAGNG
                     ARPNAGTAGRLVENMNRAGIKPEQIDLVIISHFHPDHIFGLKTADGQPVFTNAEVAVP
                     ERELSFWFDEGEESRSAEARKANFGLARRIFAPGTLRIRTYKGGDEVTPGITAIDAPG
                     HSPGHMAFRVQSGNDGLLLLSDTAHLPFLFVRNPEWTFGFDMDRELARQTRRKLLDQA
                     AADRLPVAAFHWGFPNVGHVKRAGNGFDLVRLPWPT"
     gene            complement(1913..2038)
                     /locus_tag="VE686_01555"
     CDS             complement(1913..2038)
                     /locus_tag="VE686_01555"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY83168.1"
                     /translation="MPHRPVHVLSEPERIGLTMVLSCTVCSGLVAVLAVLMMALG"
     gene            2125..2604
                     /locus_tag="VE686_01560"
     CDS             2125..2604
                     /locus_tag="VE686_01560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009490599.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YaiI/YqxD family protein"
                     /protein_id="HYY83169.1"
                     /translation="MPDSDRAIAIYVDADACPVKAEVYAVAERHSVRVFVVANSFLNV
                     PRDPLIERVVVGSGFDAADDWIAERARRGTIVVTADVPLASRCVKAGADVIGPTGRPF
                     SEASIGMALATRNLLEDLRAGGQVTGGPKPFSPRDRSAFRSALDLAIVRLKRAGFAP"
     gene            complement(2613..4163)
                     /locus_tag="VE686_01565"
     CDS             complement(2613..4163)
                     /locus_tag="VE686_01565"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY83170.1"
                     /translation="MTFARPTRPIATLIVGFAALCAWILALPRTTVTTIYVNDLLIFL
                     DGAHRIASGQVPNRDFHTALGPLVSYIPGAGYWLSGTLGGALPGGMALALLALAPAIA
                     HILATRLRPAIALPFGAFLVLVLAAPVNLGESIGSLSFAMFYNRIGWAALAALLVMYL
                     HPLPGGAQRPALDAVCATALTLAMLYTKATYGAVALGFLGFMLSDRRQRAWAGAAIVV
                     TVMGGLIVEAFWRSSLAHVADLMLASRVSGARPLADLVEVLLRHLPDFALFAMLTGLA
                     LWRSRSLRDAAFFAFCVVAGVLIANQNSQPWGIISLHAGAAVAAERLMRSQAWEPSAP
                     APRLAAGAPLLFLAIILPTLVHCLGALGLHTALAIKGAGESFGLKNLERIRLVRLWSP
                     GEHGLAKAYLDSLRDGARALAGLEPEPSRVAVLDFANGLSAGLGLSPPRGDSAWLHWG
                     RNVDAAHHIPPETLFGGVEVMMVPKWGVNHAPLFELYGRYVGQAFEPVRETTGWTVHR
                     RRARLAAQ"
BASE COUNT          688 a         1451 c         1484 g          622 t
ORIGIN      
        1 ggcgagctga ccatgttcgt ggacgcgcgc aaccgcggcg aatccagcgt caaaatcgtc
       61 ggcacgaacc aggcgggcac ggtccgggtg ccggcgaaga ccctgctcga gctcctcgtg
      121 gatgagggct tctcgcacgt cgacgctgtt aagctcgacg tcgaaggggc ggaggacatc
      181 atcctggagc ccttcctgcg cgacgccccg gcggccctga ggccggacct tctcatcatt
      241 gaggacggat cgcagcaatg ggagaccgac ctgccgcggc tcctggaggc gagcggctac
      301 aggctgctga cgaagacgcg tctgaacttc gtgtacgagc gcgcctgagc tcgcgcccgc
      361 ggcgcctcag aaccgcccac ccatgccgat gccgccgcct ggcgtgagtt ggggctgaaa
      421 tctgctctcg gactgcgggt cggcgatgtc gcgccgatcg aacggcttca gcgtggtgct
      481 ctgacgggac cgctcgacgc cgctcccgct ccgagacgcg gcgggcccgc ttctgctggc
      541 ctgcggcttt gccgcctttg ccttgggctt cgccgccgcc ggcgtgtcgc tcatcgacgg
      601 cggcagccgc atttgctggg ccgcgacagc gccgccgagc aggaccgcga cagcaggtgc
      661 tatgaggcag gctttcagca tcggttcccc gcacgttgga tttctctggg cggtgcggcc
      721 cggggctggc tgtagcacag aaacggtcga cgggcgggcc agcccgcgcc aggcggttac
      781 cccgccgact tccacccctc acaaacaggt gacctgcacc cgattgagca ggggcagccg
      841 cccgggtaag cttggcgctg tcccgtcact ctcgacacga tagagattcc acgatgcccg
      901 atcatagccg tcgcgatgtt ctatccatgg ccgctgtcgg cgctgcatcc gcgagcctca
      961 acgttgcgcc ggcatgggct gcggcgccct tgggcggccc gagcgcgcca cccgcctacc
     1021 aattcaaagt cggctcgttc gaggtcacct ccgtcttcga cggcgcgggc cggttcccgc
     1081 tgcagcccgg gttcgtgccc gatacgccga tcgagcaggt ccgcagcgcc tttgcggacg
     1141 cgatgcgttc gaccgaaacc gtggacaatc cctacacgcc catgatcatc aacaccgggc
     1201 agcggctgat cctggtcgac gcgggcaacg gcgcgcggcc gaacgccgga acggcggggc
     1261 ggcttgtcga gaacatgaac cgcgccggga tcaagcccga gcagatcgat ctcgtcatca
     1321 tctcgcattt ccaccctgac cacatcttcg gcctgaaaac cgcggacggg cagccggtgt
     1381 ttacgaatgc cgaggtcgca gttccggagc gcgagctgtc gttctggttc gacgagggcg
     1441 aggagagccg ctcggcggaa gcgcgcaagg cgaacttcgg gctcgcgcgg cgcatcttcg
     1501 ccccgggcac cctgcgcata cggacctata agggcggcga cgaagtgacg ccgggcatca
     1561 cggctatcga tgcgcccggg cattcgcccg gtcacatggc cttccgggtt cagtccggaa
     1621 acgacgggct gctgctcctg tcggacacgg cccacctgcc gttcctgttc gtgcgcaatc
     1681 ccgagtggac gttcggcttc gacatggatc gagagctcgc acggcagacc cggcgcaagc
     1741 tcctggatca ggccgcagcc gaccggcttc ccgtggcggc gttccactgg ggtttcccga
     1801 acgtcgggca cgtgaagcgg gccgggaacg gattcgatct cgtccggctc ccctggccga
     1861 cctgagggcc ggcagtagca gcgcgggcgc cagctgaagc ggcgtgccgc ggttacccga
     1921 gtgccatcat gaggacggcg agcaccgcca ccagccctga gcacacggta cagctcagca
     1981 ccatcgtcag ccctatccgc tccggttccg acaggacgtg aacgggacga tggggcatgg
     2041 tcggctcggc gctagaggag gcgtttccaa ggtggatggc ttctggttaa cagaaactta
     2101 accctgcact tccgcggcct caccgtgccc gattcagacc gcgccatcgc catctacgtc
     2161 gacgccgacg cctgtccggt gaaggccgag gtatacgccg tggcggagcg ccatagcgtc
     2221 cgggtcttcg tggtggcgaa cagcttcctc aacgtgcccc gcgatccgct gatcgagcgg
     2281 gtcgtcgtcg gcagcggctt cgacgcggct gacgactgga tcgccgagcg cgcccgtcgc
     2341 ggtacgatcg tcgtcaccgc cgacgtgccc ctcgcaagcc ggtgcgtgaa ggcgggcgcg
     2401 gacgtcatcg gaccgacggg gcggccgttc agcgaggcct caatcgggat ggcgctcgcc
     2461 acccgcaacc tgctcgagga cctgcgcgcc ggcggccagg tcacgggcgg tccgaagccc
     2521 ttctcgcccc gcgaccgctc ggccttccgc tccgcccttg acctcgccat cgtgcgtctg
     2581 aagagggctg gcttcgcgcc ctgacggctg gcctactgtg ccgcgaggcg tgcgcgccgg
     2641 cggtgcacgg tccagcccgt ggtctcgcgc accggctcga aggcttggcc cacgtaacgg
     2701 ccgtagagct cgaagagggg ggcgtggttc acgccccatt tgggcaccat catcacctcg
     2761 acgccgccga acagcgtttc gggcggaatg tggtgcgccg cgtcgacgtt gcggccccag
     2821 tgcagccagg cgctgtcgcc gcgcggcggg ctcaagccga gcccggccga caggccattg
     2881 gcaaagtcca ggactgcaac gcggctgggt tccggctcga gccccgcgag cgcccgagcg
     2941 ccgtcgcgca ggctgtccag ataggccttc gcgagcccgt gttcgccggg cgaccacagc
     3001 cgcacgagcc tgatgcgctc gaggttcttc aggccgaagc tctcacccgc gcccttgatg
     3061 gcaagcgccg tgtggaggcc gagcgccccg aggcagtgga cgagggtcgg caggatgatg
     3121 gcgaggaaca ggagcggcgc accggccgca agccgcggcg caggagcgct cggctcccat
     3181 gcctgcgagc gcatgaggcg ttccgcggcc acggccgctc cggcgtgcag cgagatgata
     3241 ccccagggct gcgagttctg gttcgcgatg agcacacccg cgaccacgca gaaggcgaag
     3301 aaggccgcgt cacgcaggct gcggctccgc caaagcgcga ggcccgtgag catggcgaag
     3361 agcgcgaagt cggggaggtg tcgcaggagc acctcgacaa ggtcggcgag cggccgcgcg
     3421 ccgctgaccc gactcgcgag catcaggtcc gccacgtgcg cgagcgagga gcgccagaac
     3481 gcctcgacga tgaggccccc catcaccgtc accacaatcg ccgcgcccgc ccaggcgcgc
     3541 tgccggcggt cggacagcat gaaccctaag aacccgagcg cgacggcgcc gtatgtcgcc
     3601 ttggtgtaga gcatggcgag cgtgagcgcg gtggcgcaga ccgcgtccaa ggccgggcgc
     3661 tgcgcgcctc cgggcagcgg gtgcagatac atgacaagga gggcggcgag cgccgcccag
     3721 ccgatccggt tgtagaacat cgcgaacgag agcgatccga tgctctcgcc gaggttcacg
     3781 ggcgcggcca gcacgaggac caggaaggcc ccgaacggca gcgcgattgc gggccgcagc
     3841 cgcgtggcga ggatgtgggc aatggccggc gctagcgcga ggagggcgag tgccatgcca
     3901 cccggcagcg ccccgccgag cgtgccggaa agccagtatc ccgccccggg gatgtaggag
     3961 acgagcggcc caagcgccgt gtggaaatca cggttcggga cctgtcctga ggcgatgcgg
     4021 tgcgcgccat cgaggaagat cagcaggtcg ttgacgtaga tggtcgtgac ggtggtgcgc
     4081 gggagcgcaa ggatccacgc gcacagagcc gcaaagccga cgatgagcgt tgcgatgggc
     4141 cgcgtcgggc gggcgaaggt catctgggac tcggcgttat tccgggccgc cctcctcgtt
     4201 caagcggcac cgcagagggc aacgccttgg cacggtacag gtttc
//
LOCUS       DASQWN010000082         6418 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1106972, whole genome shotgun sequence.
ACCESSION   DASQWN010000082 DASQWN010000000
VERSION     DASQWN010000082.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 6418)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6418)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6418
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1106972"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1154)
                     /locus_tag="VE686_01570"
     CDS             complement(<1..1154)
                     /locus_tag="VE686_01570"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY83171.1"
                     /translation="MAQQLREGYGLELKVAGRSTAALLPVPRLKFTDVTITTADGTQV
                     VQAAQLTGEIRIAPLFAGRIELAEAALHDAAIDLRAGAAETAVRHLREQADGRGATSA
                     PIRRLVVTSGRVSVHGSRSPGATAIERVNVVASWPKPDGPVEASGSVTWQGEPIDFSL
                     SELRPGALAGGAPSRFSVRLKSAAISLTAAGETSGLDGRSAGRLSLTGRSVRDVAKLA
                     RVAVPPVRPGAALSFDGDFTAEGRLVSFPSARLGLGADRLEGALSLKLGGDRPAIAGT
                     LASDQLDLSDALTQFAQMLGREGTWSDETFPGGDPGGVDFDVRLSASTARVGAMRLDD
                     FAGALLLKPGRIEAAVGRAALHGGIAKGRVTVTTLRNRADVRLQASLDGV"
     gene            1451..2185
                     /locus_tag="VE686_01575"
     CDS             1451..2185
                     /locus_tag="VE686_01575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012046653.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008410 - CoA-transferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CoA transferase subunit A"
                     /protein_id="HYY83172.1"
                     /translation="MKKVYPDAKAALAGLLRDDMVIMAGGFGLCGIPETLIEAIRDSG
                     VKGLTVISNNAGIDNAGLGLLLDTRQVRKMISSYVGENKMFAQQYLAGELEIEFNPQG
                     TLAERIRAGGAGVPAFFTKTGVGTLIAEGKETRDFGGETYVMETGLVADLSIVHAWKG
                     DAEGNLVYRKTARNFNPMMATAGRVTVAEVEHLVQPGEIEPDHIITPGIFVKRMVHVQ
                     NPSKRIEQRTVRKRAQSAAAGAGEEV"
     gene            2185..2850
                     /locus_tag="VE686_01580"
     CDS             2185..2850
                     /locus_tag="VE686_01580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012335522.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008410 - CoA-transferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-oxoacid CoA-transferase subunit B"
                     /protein_id="HYY83173.1"
                     /translation="MAWTRDDMAARAAKELRDGFYVNLGIGIPTLVSNFIPAGMSVQL
                     QSENGMLGMGPFPYEGEEDPDLINAGKQTITELPTTSYFSSADSFAMIRGGHIDLSIL
                     GAMQVAENGDLANWMIPGKMVKGMGGAMDLVAGVKKVVVVMEHTAKAKDGSEEPKLLE
                     RCNLPLTGAGVVDMVITDLGVFTIDKKGDGGMALVEIAPGVTADEIKAKTQAHFRVAL
                     ANA"
     gene            3068..3952
                     /locus_tag="VE686_01585"
     CDS             3068..3952
                     /locus_tag="VE686_01585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020096375.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HYY83174.1"
                     /translation="MVIADRPVARSWVSATIDALRAGGWIEGQNLTVDVRFGASDPER
                     IRRATEELLGLEPDVVLAQGVVGAGVLQRATKTVPVVFVQVQDPVGGGFVTSLSRPEA
                     NLTGFTNFDYAMVGKWMALLKEVAPDLTRVLAIINPGDRTRWNGYAGALEQFASALGL
                     GAQMAGVRDPGEIERALASFGAEPHGGLVVLPDATTGDHAGVIIAEAARHRLPAVYPY
                     ENQAQQGGLITYTSGVPDQYRAAAAYIDRLLRGAKPGDLPVQAAERFVTILNLRTAAA
                     LGLQIPPTLLATVDEVIE"
     gene            4084..5424
                     /locus_tag="VE686_01590"
     CDS             4084..5424
                     /locus_tag="VE686_01590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018042736.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HYY83175.1"
                     /translation="MTDRLATLRVLADRRVALMLALGFSSGLPLLLVLGTFSARLAFS
                     DIDVKTIGLFSYLALPYSLKFLWSPVVDKLDVPILARLLGRRRAWMVLSQLCVAASLT
                     LMAFADTGNQLALLGLGAFLVAFFAATQDVVIDGWRIDAVGTEMQGIMAATSNLGYRL
                     ALISAGAGALFLADWAGWTAAYLTMAALMSVGILAALAAPVLERKPPAALPEPVAAPS
                     RRPGAVAYRAIVEPLADLHRRLGPSLWAILLMVALYRMPDFVSGVMANPLYRQVGYSL
                     SEIAAVTKLYGIWVGIFASFVAGWAIARYGLYPTFVIGGILAAGSNLSFSWLAYGGPE
                     VWRLIVAISVDNFAGGFAGTALIAYMSGLTGVGFAASQYALLSSLYAFPGKLAAGSTG
                     FVVAAYGFPVFFALTAAIGIPVVILCLLVGKVPASKASASEVPPESAAAEAKPA"
     gene            5528..>6418
                     /locus_tag="VE686_01595"
     CDS             5528..>6418
                     /locus_tag="VE686_01595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014495498.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter substrate-binding
                     protein"
                     /protein_id="HYY83176.1"
                     /translation="MRNLILAAGLLAALAAPAHAQELTGTLKKIKDTGTIALGVRDSS
                     LPFSYLDDKQKVVGYTIDICMKVIDEIKSELKLDKVDIKETFVTSSTRIPLMANGTID
                     LECASTTNNADRQKQVSFSNSHFLTASRFVSKKSQKMDKIDDLKGKSVVSVSGSVNLG
                     QLIKVNAARSLGANVLTAKDVAEAFLMVETDRAQAFVMDDIQLVTMIAAAKEPSLYTV
                     SSEAFSDPEPFGIMLRKDDAPFKAVVDRATSKLYKSPEIEKIYNKWFMEPIPPRGLVI
                     NVPMPASMKKSFQNPSDSPDP"
BASE COUNT         1034 a         2213 c         2172 g          999 t
ORIGIN      
        1 tccacaccgt cgagggaggc ctgcaggcgc acgtcggcgc ggttgcgaag ggtggtgacc
       61 gtgacgcgtc ccttggcgat gccgccgtgc agcgccgcgc ggccgacggc ggcctcgatg
      121 cggcccggct tgaggaggag cgcacccgcg aaatcgtcga gccgcatggc gccgacgcgg
      181 gcggtcgagg cggacaggcg gacatcgaag tcgacgccgc cgggatcgcc gcccggaaag
      241 gtctcgtcgc tccacgtgcc ctcgcgccca agcatctggg cgaactgcgt cagcgcgtcc
      301 gagagatcga gctggtcgga ggcaagggtc cccgcgatcg cgggccggtc gccaccgagc
      361 ttcagggaga gcgccccctc gaggcggtcg gcgccgaggc caagccgggc cgaggggaag
      421 gagacgagcc ggccttccgc cgtgaagtcg ccatcgaagg acagggctgc acccgggcgc
      481 accggaggaa cggcgacgcg ggcgagtttc gcgacgtcgc gaaccgagcg cccggtcagc
      541 gacaggcgtc cggccgaacg gccgtcgagt cctgaggtct cgccggctgc ggtgagcgat
      601 atggcggcgg acttcagccg gacggagaat cgtgacgggg cgcctcccgc gagcgccccg
      661 ggccgcagct cggagaggct gaagtcgatc ggctccccct gccaggtcac gctgccagag
      721 gcctcgaccg ggccgtccgg cttcggccag ctcgcgacga cgttcaccct ctcgatggcc
      781 gtggctcccg gcgatcgact cccgtgcacg gacacgcgac cgctggtcac gaccaggcgg
      841 cggatcgggg ccgaggtcgc gccacgccca tctgcctgct cccgcaggtg ccggacggcc
      901 gtttcggcag cgccggctcg aaggtcgata gcggcgtcgt gcagggcggc ttcggcgagc
      961 tcgatgcggc cggcgaagag cggcgcgatg cggatttcgc ctgtcagctg ggccgcctgc
     1021 acgacctgcg tgccatccgc ggtcgtgatc gtcacgtcgg tgaacttgag gcgcggcacg
     1081 ggcagcagcg ccgccgtact gcggcccgcc accttcagct cgagcccgta gccctcgcgg
     1141 agctgctgcg ccaccgctcc ggcgattgtg cccgagaccg tccatggcgc gaccgcgatg
     1201 gccagtagcc cgaggcaaag caggacggcg acgaggatcg ctctgcgaga tatgtgcgag
     1261 gtgccgcctg ttggcatcgc tcggcggccc tctccgagac ggacctcgct tccgagccgt
     1321 cgtgaacgca agtgcatggc taaacggaga tgagccgaat gtctaaagta tggccgccct
     1381 tgcgagcgcg gccttccccg ccttaagaag gcgcggtcgc gggcggtgcg gcgctcgcgg
     1441 gaggacgagg atgaagaagg tttacccgga cgcaaaggcg gcgcttgccg gcctcttgcg
     1501 cgacgacatg gtcatcatgg ctggcggctt cggcctgtgc ggcatccccg agaccctcat
     1561 cgaggccatc cgcgactccg gcgtgaaggg cctgacggtg atctccaaca acgccggcat
     1621 cgacaacgcc gggctcgggc tcctgctcga cacgcgccag gtgcgaaaga tgatctcgtc
     1681 ctacgtcggc gagaacaaga tgttcgccca gcagtacctc gcgggcgagc tcgagatcga
     1741 gttcaacccg cagggtaccc tcgccgagcg catccgcgcc ggcggcgccg gcgtgccggc
     1801 gttcttcacc aagacgggtg tcggcaccct tattgcggaa ggcaaggaga cgcgcgactt
     1861 cggcggcgag acctacgtca tggagaccgg cctcgtcgcc gatctctcca tcgtgcacgc
     1921 gtggaagggc gacgcagaag gaaacctcgt ctaccggaag acggcgcgga acttcaatcc
     1981 gatgatggcg acggcgggcc gggtgacggt cgccgaggtc gagcacctcg tccagccggg
     2041 cgagatcgag cccgaccaca tcatcacccc cggcatcttc gtgaagcgca tggtgcacgt
     2101 gcagaacccg tcgaagcgca tcgagcagcg cacggtccgc aagcgcgcgc aaagcgctgc
     2161 ggccggcgca ggggaggaag tgtgatggcc tggacccgcg acgacatggc ggcgcgcgcc
     2221 gcgaaggagc tgcgcgatgg cttctacgtc aacctcggca tcggcatccc gacgctcgtc
     2281 tcgaacttca tcccggccgg catgagcgtg cagctgcaga gcgaaaacgg catgctcggc
     2341 atgggcccgt tcccctacga gggcgaggag gatcccgacc tcatcaacgc cggcaagcag
     2401 accatcacgg agctgccgac gacgagctat ttctcgagcg ccgattcgtt cgcgatgatc
     2461 cgcggcggcc acatcgacct gtccatcctc ggcgccatgc aggttgccga gaacggcgac
     2521 ctcgccaact ggatgatccc gggcaagatg gtgaagggca tgggcggcgc catggacctc
     2581 gtcgccgggg tcaagaaggt cgtcgtcgtc atggagcaca ccgccaaggc gaaggacggg
     2641 agcgaggagc cgaagctcct cgagcgctgc aaccttcccc tcacgggcgc aggcgtggtc
     2701 gacatggtga tcacggacct cggcgtgttc accatcgaca aaaaggggga cggcggcatg
     2761 gccctcgtcg agatcgcgcc gggggtgacg gcggacgaga tcaaggcgaa gacgcaagct
     2821 cacttccggg tcgcgctagc gaacgcctga cacaagcgct ttcggccccg cggcctgata
     2881 gccccggtgg gcagggcctc gtgttctgca accagatgag cggcgtgcta tgtagcgctg
     2941 gtgcgtgacg acccaggggc ggatcgtgag gcggcggagc tttctcgtcg gggttggagg
     3001 cgcgctcgcg gcagcaccgt tttgcgcccg ggcgcaagca ggtccctcgc gacgtatcgc
     3061 gaacctaatg gtcattgcag accggccggt ggcgcgctcg tgggtttccg ccacaatcga
     3121 cgcgctgcgg gccggggggt ggatcgaggg gcagaacctc accgtcgacg tccgcttcgg
     3181 cgccagcgat cctgaacgca tccggcgcgc gacggaggag ttgctcggtc tcgagcccga
     3241 cgtggtgctc gcccagggtg ttgtcggtgc tggcgtcctg cagcgcgcga cgaagaccgt
     3301 tccggtcgtt ttcgtgcagg ttcaggaccc ggtcggcgga gggttcgtga ccagcctgtc
     3361 gcgaccggag gccaatctga ccggcttcac caacttcgac tacgccatgg tcggcaagtg
     3421 gatggcgctc ctgaaggagg tcgcgccgga cctcacacgg gtgctggcca tcatcaaccc
     3481 gggcgatcgc acgcgctgga acggctacgc cggagctctg gaacagtttg cttcggccct
     3541 cggcctcggg gcgcagatgg cgggcgtgcg cgacccaggc gagatcgagc gcgcgctcgc
     3601 gtccttcggc gcggagcctc acggcggcct cgtcgtgctc ccggacgcca ccacgggcga
     3661 ccatgccggc gtcatcatcg cggaggcagc gcgtcaccgc ctgccggcgg tctacccata
     3721 cgaaaatcag gcccagcaag gcggtctcat cacctacacg agcggtgtcc ccgatcagta
     3781 tcgcgccgcg gccgcctaca tcgaccggct gctgcgaggc gcgaagcccg gagatctgcc
     3841 ggtccaggcc gccgagcggt tcgtgaccat cctgaacctg aggaccgcgg ctgccctcgg
     3901 gcttcaaatc ccgccaacgc tcctcgccac cgtcgacgag gtgatcgagt gaggcgccgc
     3961 ggttccgccg caaaagccgg cgagggcagg gcgggccggg acgggtaagc attcgttgac
     4021 catgccggcc cgatgatcgc ccgctgccgc gagcccgcgc cgcccctgca cgacggcttt
     4081 gagatgaccg accgcctcgc caccctgagg gtccttgcgg accggcgcgt cgcgctgatg
     4141 ctggcgctgg gcttctcgtc ggggctgccg ctgctcctcg tgctcggcac cttctcggcc
     4201 cggctcgcct tctcggacat cgacgtcaag accatcggtc tcttcagcta cctggcgctg
     4261 ccctacagcc tgaagttcct gtggtcgccg gtcgtcgaca agctcgacgt gccgatcctg
     4321 gcgcggctgc tcggccgtcg ccgggcctgg atggtgctgt cgcagctctg cgtcgccgcc
     4381 tcgctgacgt tgatggcttt cgccgacacg ggcaaccagc tcgcacttct cggcctcggc
     4441 gctttcctgg tcgcgttctt cgccgccaca caggacgtgg tgatcgatgg ctggcgcatc
     4501 gacgccgtcg gcaccgagat gcagggcatc atggcggcga cctcgaacct cggctaccgc
     4561 ctggccctca tcagcgccgg cgcgggggct ctgttcctcg ccgactgggc tggctggacg
     4621 gccgcgtacc tgaccatggc ggccctgatg agcgtcggca tcctcgccgc gctcgccgcg
     4681 ccggtgctcg agcgcaagcc cccggcagcg ttgcccgagc ccgttgccgc gccgtcgcgg
     4741 cggcccggcg cggtggcgta cagggcgatc gtcgagcccc tcgcggacct ccaccggcgc
     4801 ctcgggccga gcctctgggc catcctcctg atggtcgccc tctaccgcat gcccgacttc
     4861 gtgtcgggcg tgatggccaa ccctctctat cggcaggtcg gatactcgct ctccgagatc
     4921 gcggccgtga ccaagctcta cgggatctgg gtcggcatct tcgcctcgtt cgtcgccggc
     4981 tgggcgatcg cgcgctacgg gctctacccg accttcgtga tcggcggcat cctcgcggct
     5041 ggatcgaacc tcagcttctc gtggctcgcc tacggcgggc cggaggtctg gcgcctcatc
     5101 gtcgcgatct cggtcgacaa tttcgccggc ggcttcgccg gcacggcgct catcgcctac
     5161 atgtcggggc tgacgggggt cggcttcgcg gcgagccaat acgcgctcct gtcctccctc
     5221 tacgccttcc cgggcaagct cgccgcgggc agcacggggt tcgtggtcgc ggcctacggc
     5281 ttcccggtct tcttcgccct cactgccgcc atcggcatcc cggtcgtcat cctctgcctc
     5341 ctggtgggga aggtgccggc cagcaaggcg agcgcaagcg aggttccgcc ggagtcggcg
     5401 gcagccgaag cgaagcccgc ctgagcggcc ggcgttggat ccgtgcctca ggtccgcgtg
     5461 cgtcagcctt cgctcagcag agctttccat gctacgcacc gacatcacgc cacggaagag
     5521 agctgacatg cgcaacctga tcctagccgc cgggctcctg gcggcgcttg ccgcacctgc
     5581 gcatgcccag gaactcactg gaaccctcaa gaagatcaag gacaccggca cgattgcgct
     5641 tggcgtgcgc gacagctcgc tcccgttcag ctacctcgac gacaagcaga aggtcgtcgg
     5701 gtacacgatc gacatctgca tgaaggtgat cgacgagatc aaatccgagc tgaagctcga
     5761 caaggtcgac atcaaggaga ccttcgtcac gtcgtcgacc cgcatcccgc tgatggccaa
     5821 cggcaccatc gacctcgaat gcgcctcgac gaccaacaat gccgatcgcc agaagcaggt
     5881 ctccttcagc aacagccact tcctgaccgc gagccgtttc gtgtccaaga agtcgcagaa
     5941 gatggacaag atcgacgacc tgaagggcaa gtccgtcgtt tccgtgtcgg gctcggtcaa
     6001 ccttggccag ctcatcaagg tcaacgctgc gcgctcgctc ggcgccaacg tgctcactgc
     6061 gaaggatgtg gcagaagcgt tcctgatggt cgagacggac cgcgcccagg ccttcgtgat
     6121 ggacgacatc caactcgtca cgatgatcgc cgccgcgaag gagccgtcgc tctacaccgt
     6181 cagctcggag gccttctcgg atcccgaacc cttcggcatc atgcttcgga aggacgacgc
     6241 cccgttcaag gcggtcgtcg atcgcgccac cagcaagctc tacaagagcc ccgagatcga
     6301 gaagatctac aacaagtggt tcatggagcc gatcccgccg cgcggcctcg tgatcaacgt
     6361 ccccatgccg gcttcaatga agaagagctt ccagaacccg tcggatagcc cggacccg
//
LOCUS       DASQWN010000083         2359 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1306062, whole genome shotgun sequence.
ACCESSION   DASQWN010000083 DASQWN010000000
VERSION     DASQWN010000083.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2359)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2359)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2359
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1306062"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1087)
                     /locus_tag="VE686_01600"
     CDS             complement(<1..1087)
                     /locus_tag="VE686_01600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012333060.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hybrid sensor histidine kinase/response
                     regulator"
                     /protein_id="HYY83177.1"
                     /translation="MIASWAVVLSALVYLCLLFAVAHWGDLHGRRIMQGRARSTIYAL
                     ALAVYCTSWTFFGSVGLASRSGLDFLTIYVGPILMIGFGYPLVGRVVRLAKAQNITSV
                     ADFVAARYGKSERVAALVSAIAVVGSVPYIALQLKAVSASLGVFLTGTDAPFGRAMPV
                     FGDLALVVAFVLAGFAVAFGTRHTDATEHQDGLMVAISLESVVKLVAFLLVGIYVTFF
                     MFGGLSGIDRALAARDLDLSVGLRSADAATLVTLTVLSASASLLLPRQFHMTVVENRA
                     VEDVRRAAWLFPLYLVLINLFVIPIALGGLALFPQGQIDRDMTVLALPLRDGARGVAL
                     AAFLGGLSAATAMVIVESVAVAIMISNH"
     gene            1264..1695
                     /gene="mscL"
                     /locus_tag="VE686_01605"
     CDS             1264..1695
                     /gene="mscL"
                     /locus_tag="VE686_01605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020187765.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008381 - mechanosensitive monoatomic ion
                     channel activity [Evidence IEA];
                     GO_process: GO:0034220 - monoatomic ion transmembrane
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="large conductance mechanosensitive channel
                     protein MscL"
                     /protein_id="HYY83178.1"
                     /translation="MLEEFKKFALRGNVVDLAIGVIIGAAFGRIVDSIVGDLFMPIVG
                     AVTGGLDFSNYFVPLSGEVTASALDEARRQGAVVAWGSFVTVTINFLIVAWVLFLVVK
                     GMNRMRRREDEKVDAAAAPEIPADVKLLAEIRDLLAARPAA"
     gene            1863..>2359
                     /locus_tag="VE686_01610"
     CDS             1863..>2359
                     /locus_tag="VE686_01610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009491362.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class I/II-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HYY83179.1"
                     /translation="MNAPVPSPAVLALRPEAAGAPTSGIVDVFNYGRTRPGLIPLWVG
                     EGDLPTPAFICEAAARSLKDGETFYTYQRGIPELREALARYHERLYRMPSDPERFFVT
                     MGGMHAAQMAVRMVAGPGDEVAIPSPAWPNFAGAITVSGARPVEVPLAFDARAGWSLD
                     LDRLAA"
BASE COUNT          379 a          850 c          825 g          305 t
ORIGIN      
        1 ggtggttcga gatcatgatc gccaccgcga ccgactcgac gatcaccatc gcggtggcgg
       61 ccgagagccc gcccaggaag gccgcgagcg cgaccccgcg ggccccgtcc cggagcggca
      121 gcgccaggac cgtcatgtcg cggtcgatct gcccctgcgg gaacagcgcg agcccgccga
      181 gcgcgatcgg gatcacgaac aggttgatca gcacgaggta gagcgggaac agccaggccg
      241 cccgccggac gtcctcgacg gcccggttct cgaccaccgt catatggaac tgccgcggca
      301 gcagcagcga cgccgaggcg gagagcaccg tcagggtcac gagggtggcg gcatccgccg
      361 agcgcagccc gaccgacagg tcgaggtcgc gcgccgcgag cgcccggtcg atgccggaga
      421 gcccgccgaa catgaagaac gtcacgtaga tcccgacgag caggaaggcg acgagcttga
      481 cgaccgattc gagcgagatc gccaccatca gcccgtcctg gtgctcggtc gcgtccgtgt
      541 ggcgcgtccc gaacgccacc gcgaagccgg cgagcacgaa tgcgaccacg agggcgaggt
      601 cgccgaagac cggcatggcg cgcccgaacg gcgcgtcggt cccggtgagg aagaccccga
      661 gcgaggccga gaccgccttg agctggagcg cgatgtaggg caccgacccg accaccgcga
      721 tggccgagac gagcgccgcc acgcgctcgc tcttgccgta gcgggcggcc acgaaatccg
      781 ccaccgaggt gatgttctgc gccttggcga gccggaccac ccggccgacg agcgggtacc
      841 cgaagccgat catcaggatc gggccgacat agatcgtcag gaagtcgaga ccggaccggc
      901 tcgccagacc gaccgagccg aagaacgtcc aggatgtgca atagaccgcg agcgccagcg
      961 cgtagatggt cgagcgggcg cgcccctgca tgatgcggcg gccatgcagg tcgccccaat
     1021 gggccacggc gaacaacagg cagagataga cgagggccga caggacgacc gcccagcttg
     1081 caatcatgcg gtgcaccgaa ccgaaggtcg aggcacccta gaggctccgg ggcgccggcg
     1141 ccatgggacg aaaagcggtg aatggcccct cccgggcgct cagctgcgct tcccggccgt
     1201 cctgccggag ggttaagctt cgccgccggc cggcgggccg cgcccctcaa ccggagaggc
     1261 atcatgctcg aggaattcaa gaagttcgcg ttgcgcggca acgtcgtcga cctcgcgatc
     1321 ggggtgatca tcggagccgc cttcggcagg atcgtcgatt cgatcgtcgg cgacctgttc
     1381 atgccgatcg tcggcgccgt cacgggcggg ctcgatttca gcaactactt cgttcccctg
     1441 tcgggcgagg tcaccgcctc ggcgctcgac gaggcccgcc ggcagggcgc cgtcgtcgcg
     1501 tggggctcgt tcgtcaccgt gacgatcaac ttcctcatcg tcgcgtgggt cctgttcctg
     1561 gtcgtcaagg ggatgaaccg gatgcgccgc cgcgaggacg agaaggtcga tgcggcggcc
     1621 gcccccgaga tcccggccga cgtgaagctc ctcgccgaga tccgcgacct cctggccgcc
     1681 cgcccggccg cctgagcggg gcccgccgga cggcggcgcg ggatcctggg accatcctgg
     1741 cggcatcccg atccatcacc gccggcgatg ggtccggtcg cgctttttca tgacgcgcgc
     1801 cgccgcgttg cgctaaggag gccgcttcgc gcccgtggtc cgcgctccga ggaaccgtcc
     1861 cgatgaacgc ccccgtcccg agcccagccg ttctcgccct gcgccccgag gccgccggcg
     1921 ctccgacgag cggcatcgtc gacgtgttca attacggccg cacccggccc ggcctgatcc
     1981 cgctctgggt gggcgagggc gacctgccga cgcccgcctt catctgcgag gcggcggcgc
     2041 gttcgctcaa ggacggcgag accttctaca cctatcagcg cggcatcccg gagctgcgcg
     2101 aggcgctcgc ccgctaccat gagcggctct accggatgcc ctccgatccc gagcgcttct
     2161 tcgtcaccat ggggggcatg cacgccgccc agatggcggt gcggatggtc gcggggcccg
     2221 gcgacgaggt cgcgatcccg agcccggcct ggccgaactt cgcgggcgcc atcacggtgt
     2281 cgggcgcccg cccggtcgag gtgccgctcg cattcgacgc ccgggccggc tggagcctcg
     2341 acctcgaccg gctcgccgc
//
LOCUS       DASQWN010000084         7517 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_16058, whole genome shotgun sequence.
ACCESSION   DASQWN010000084 DASQWN010000000
VERSION     DASQWN010000084.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 7517)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7517)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7517
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_16058"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            412..798
                     /locus_tag="VE686_01615"
     CDS             412..798
                     /locus_tag="VE686_01615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009492562.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HYY83180.1"
                     /translation="MASRTKCRVLVVEDEPMIAMMFDEMIQDFGSEVIGPASQMKEAL
                     RLASTAELDAAVLDINLGGAVVYPVADVLQERGIPFIFATGYRRETLPARFAESTALP
                     KPFTYATLADALEAALAGQPCHTEAA"
     gene            complement(815..1546)
                     /gene="phoB"
                     /locus_tag="VE686_01620"
     CDS             complement(815..1546)
                     /gene="phoB"
                     /locus_tag="VE686_01620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012336312.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA];
                     GO_process: GO:0006796 - phosphate-containing compound
                     metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate regulon transcriptional regulator
                     PhoB"
                     /protein_id="HYY83181.1"
                     /translation="MRAGARPEEPPSAPRILIVEDEETLTLLLRYNLEAAGYAVESVA
                     RGDEAELRIAEEPPDLVLLDWMLPGVSGVELCRRIRARKDTQRLPIIMLTARGEEADR
                     VRGLSTGADDYVVKPFSVPELVARVGALLRRADPAQSASRLVAGDLEIEREARRVRRA
                     GRELHLGPTEYRILEFLMLKPGRVYSREQLLDGVWGRDAYVDERTVDVHIGRLRKALS
                     TAGEHDPIRTVRGAGYSFDETYGAA"
     gene            complement(1543..2271)
                     /gene="phoU"
                     /locus_tag="VE686_01625"
     CDS             complement(1543..2271)
                     /gene="phoU"
                     /locus_tag="VE686_01625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012336313.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0051049 - regulation of transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate signaling complex protein PhoU"
                     /protein_id="HYY83182.1"
                     /translation="MPDHIVSAFDADLGELRRGIAEMGGIAEKMLSDATSALVRDHAG
                     LARSVIAEDPRLDDLQRLIEERGILTIARRQPLAVDLREVIAALRIASDLERAGDLAK
                     NVAKRVIATTGQSQPKRAVTGVERMSDLAIAQLHDVLDAYAANDVEGALSVWRRDGAI
                     DAMNNSLFRELLTYMMEDPRSISSCTHLLFCAKNIERIGDHTTNIAETIHYLVKGEPL
                     AAERPKDDRSSFAIIEPPPADGRK"
     gene            complement(2294..3112)
                     /gene="pstB"
                     /locus_tag="VE686_01630"
     CDS             complement(2294..3112)
                     /gene="pstB"
                     /locus_tag="VE686_01630"
                     /EC_number="7.3.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007562351.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009898 - cytoplasmic side of plasma
                     membrane [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0015415 - ATPase-coupled phosphate ion
                     transmembrane transporter activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter ATP-binding protein
                     PstB"
                     /protein_id="HYY83183.1"
                     /translation="MSEAVLSAAPTVTAHPAAGAAGPVRIAVRKLDFYYGDFRALKSI
                     DLDFHDREVTALIGPSGCGKSTLLRTFNRIYSLYPEQRATGEVILDGRNVLSPEMDVN
                     ELRARVGMVFQKPTPFPMSIYDNVAFGLRLDGRLPRAEVDARVEEALRRAALWDEVKD
                     KLKQSGTGISGGQQQRLCIARAIAQGPDVILLDEPTSALDPISTGKIEELIDELKRDF
                     TIVIVTHNMQQAARISQYTAFMYLGEVVEFGPTSRIFMTPREKRTQDYVTGRFG"
     gene            complement(3109..4011)
                     /gene="pstA"
                     /locus_tag="VE686_01635"
     CDS             complement(3109..4011)
                     /gene="pstA"
                     /locus_tag="VE686_01635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020094140.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0015415 - ATPase-coupled phosphate ion
                     transmembrane transporter activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter permease PstA"
                     /protein_id="HYY83184.1"
                     /translation="MAATGGAPAATVPASAPTWGRVRSSRRVADRAMKVMCVVFTALG
                     VFVLGWILGMLAWKGLGALTPRIFTEVTPGPGSEGGGLANAIVGSIVLTCLGIAVATP
                     IGLMAGTYLAEYGRTSRLATVIRFVNDVLLAAPSILIGLFVYTVMVQPMGGYSGWAGG
                     VALAVIATPVIVRTTEDMLRLVPSTMREAGAALGAPPSFVIRRVTWRAARAGIVTGIL
                     LALARIAGETAPLLFTALNNSFWFSPTLLGGVSNLPVTIFQFALSPYDNWQGLAWAGA
                     LLITAAVLALSVGARLYLNRKAAR"
     gene            complement(4013..4960)
                     /gene="pstC"
                     /locus_tag="VE686_01640"
     CDS             complement(4013..4960)
                     /gene="pstC"
                     /locus_tag="VE686_01640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015933722.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0015415 - ATPase-coupled phosphate ion
                     transmembrane transporter activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter permease subunit PstC"
                     /protein_id="HYY83185.1"
                     /translation="MPQAASPRRPALAVSDQVFRAAALACALLVLTVLVGILASMLYG
                     GWPVFREFGLVDFITGSTWDVNNDRYGAWPAIAGTLSTALIALVLGVPISLGIAVFLT
                     QLSPPWLKRPIGTAVEILAAVPSIVYGMWGLFVLAPLVAAYVQVPLNQVVEGMPIVGT
                     ILYSQVPSGTGIATAGVILAFMIIPFIASVTRDMFDQIPTVLRESAYGIGCTTWEVVR
                     HVLVPQAGVSIIGAIMLGLGRALGETMAVTFVVGNANRLSASIFEPGSTIASRIANEF
                     NEALGLQMSALIALGCVLFVVTFVVLAVARALIARVKVY"
     gene            complement(5032..6066)
                     /gene="pstS"
                     /locus_tag="VE686_01645"
     CDS             complement(5032..6066)
                     /gene="pstS"
                     /locus_tag="VE686_01645"
                     /EC_number="7.3.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012336317.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0043190 - ATP-binding cassette (ABC)
                     transporter complex [Evidence IEA];
                     GO_function: GO:0042301 - phosphate ion binding [Evidence
                     IEA];
                     GO_process: GO:0035435 - phosphate ion transmembrane
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter substrate-binding
                     protein PstS"
                     /protein_id="HYY83186.1"
                     /translation="MFGTALALAGASAPAAAADITGAGATFPFPLYSKWAEAYKKETG
                     TGLNYQSIGSGGGIRQIKAKTVDFGATDSPLKGDDLEKSGLVQFPTVLGGVVPIVNVQ
                     GIQDGQLKLSGEILADIYRGQVKRWNDPRIAELNQGVSLPDANITPVYRSDGSGTTSI
                     FTDYLSNASADWKQQLGTGTTVNWPVGQGGKGNEGVAATVKQVVNAIGYVEYAYAKQN
                     KMPVAQMRNKDGAFVAPDDKTFAAAAANADWNSAPGFGISLVNQAGAQAWPITGATFI
                     LVYKSPDKPEQVAEVLKFFDWAYKSGDALAADLDYVPLPDAVADQVRGVWAKEIKDKS
                     GKPLFPGKPS"
     gene            6363..6791
                     /gene="arsC"
                     /locus_tag="VE686_01650"
     CDS             6363..6791
                     /gene="arsC"
                     /locus_tag="VE686_01650"
                     /EC_number="1.20.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012752386.1"
                     /note="This arsenate reductase requires both glutathione
                     and glutaredoxin to convert arsenate to arsenite, after
                     which the efflux transporter formed by ArsA and ArsB can
                     extrude the arsenite from the cell, providing resistance;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology.
                     GO_function: GO:0008794 - arsenate reductase
                     (glutaredoxin) activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="arsenate reductase (glutaredoxin)"
                     /protein_id="HYY83187.1"
                     /translation="MDVIIYHNPQCGTSRNALGLIRNAGIEPHVIEYLKTPPTRALLL
                     QLIRRMGIAVRDLVREKGTPFHDLGLDRPGVGDDELLDAMVAHPILINRPIVVAANGV
                     KLCRPSEAVLDILPTPQRGEFTKEDGEVVIDAAGRRVATA"
     gene            6788..7471
                     /locus_tag="VE686_01655"
     CDS             6788..7471
                     /locus_tag="VE686_01655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011425786.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015267 - channel activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MIP/aquaporin family protein"
                     /protein_id="HYY83188.1"
                     /translation="MSAMPRSRRLVAEGLGTGLLVATVVGSGIMAAKLAAGNVALALL
                     GNTLPTGAILVVLILALAPISGAHFNPAVSLAVALSGGLPWRDLAPYVAVQVVGGCLG
                     TLAAHGMFELPLFQTGVTTRSGAAQWFAEFVATFGLLVIILAVVRFRIEAIPMAVGLY
                     ITAAYWFTASTSFANPAVTVARGFTSTFAGIALGDVPMFVLAQLAGAMAALGLMRWLL
                     PSGQTARDG"
BASE COUNT         1168 a         2499 c         2645 g         1205 t
ORIGIN      
        1 tcctgcgcaa gccgcggcaa ctcgtgggcc cgcccgccgg cggcccgctg ctcgatgacg
       61 agattgcgac cgggaacgta cccgtggtcc gccagggcgg ctttcatcgc ggcgagcctt
      121 gcgtcgctct ccgcgagcac cgggccggga gtgagcaggc caatccgagc gacccgggac
      181 ggctgccccc accccctgct tggggcaaaa acggccgcgg ccgcaagtcg aaggaccgca
      241 cgacgctgca ttccggcctc ccgggttcag ggaagagcgt acgcctatgc tcggcttcga
      301 gtcacggcag atctccacac cgccacgggc aactcgttcg aaagaaggcg gggtggaacc
      361 ttggccgcag cttggccgtt tgaaaccagt cacgcaccga gggagccgct ggtggcaagc
      421 cggacgaagt gccgcgttct ggtcgtcgag gacgagccga tgatcgcgat gatgttcgac
      481 gagatgatcc aggatttcgg gagcgaggtg atcggacccg ccagccagat gaaggaagcc
      541 cttcgcctgg catcgacggc cgagctcgac gccgccgttc tggacatcaa tctcggcggg
      601 gcggtcgtgt accccgttgc cgacgtcctg caggagcgcg gcatcccgtt catcttcgcg
      661 accggctatc ggcgcgaaac gcttcccgcg cgctttgccg aaagtaccgc cctgccaaag
      721 cccttcacct atgcaaccct cgccgacgcg ctcgaggcgg cgctggcggg gcagccttgc
      781 cacacggaag cagcgtaggc ctgaagcgcg ggtattacgc ggcgccgtag gtctcgtcga
      841 aggagtagcc ggcgccacgg accgtgcgga tcgggtcgtg ctcgcccgcg gtgctgaggg
      901 ctttgcggag gcgaccgatg tgcacgtcga cggtgcgctc gtcgacgtag gcgtctcggc
      961 cccagacgcc gtcgagaagc tgctcgcgcg agtacacacg gccgggcttg agcatcagga
     1021 actcgaggat gcggtactcg gtcgggccga ggtgcagctc cctgccggcc cggcgcacgc
     1081 ggcgcgcctc gcgctcgatc tcgaggtcgc cggcgacgag ccggctcgcg ctctgggcgg
     1141 ggtcggcgcg gcgcaggagc gcgccgacgc gggcgacgag ctcggggacc gagaacggct
     1201 tgaccacgta gtcgtcggca ccggtcgaga gcccgcgcac acggtccgcc tcctcgccgc
     1261 gggccgtgag catgatgatc ggcaggcgct gcgtgtcctt gcgggcgcgg atgcggcggc
     1321 acagctcgac gcccgatacg cccggcagca tccagtcgag cagcacgaga tcgggcggct
     1381 cttccgcgat gcgcagctcg gcctcgtcgc cgcgcgcgac gctctcgacc gcgtagccgg
     1441 cggcctcgag gttgtagcgc agcagcagcg tcagggtttc ctcgtcctcg acgatgagga
     1501 tgcggggggc cgatggcggc tcctcaggtc gtgccccggc tctcacttgc gcccgtccgc
     1561 cgggggaggc tcgatgatgg cgaagctcga gcggtcgtcc ttcggccgct cggccgcaag
     1621 cggctcgccc ttcacgaggt agtggatcgt ctcggcgatg ttggtggtgt ggtccccgat
     1681 gcgctcgatg ttcttggcgc agaacagcag gtgcgtgcag gacgagatgc tgcgcgggtc
     1741 ttccatcatg taggtcagga gctcgcgaaa cagcgagttg ttcatggcgt ctatggcgcc
     1801 gtcccggcgc cacaccgaaa gcgcgccctc gacgtcgttc gccgcatagg cgtcgagtac
     1861 gtcgtggagc tgggcgatcg ccagatcgct catgcgctcg acgcccgtga ctgcgcgctt
     1921 gggctgcgac tgcccggtcg tggcgatcac gcgcttggcg acgttcttgg cgaggtcgcc
     1981 ggcgcgctca aggtcgctcg cgatgcgcag ggcggcaatg acctcgcgca ggtcgaccgc
     2041 gagcggctgc cggcgggcga tggtgaggat tccgcgctcc tcgatcaggc gctgcaggtc
     2101 atcgaggcgc gggtcctcgg cgatgacgct gcgggcgagg ccggcgtgat cgcgcacgag
     2161 cgcggaggtc gcgtcgctca gcatcttctc ggcgatgccg cccatctcgg cgatgccccg
     2221 gcgcagctcg ccgagatcgg catcgaaggc ggagacgatg tggtccggca tggcttcccc
     2281 ttaagtcccg cgctcagccg aagcggccgg tgacgtagtc ctgcgtgcgc ttctcccgcg
     2341 gggtcatgaa gatccggctc gtcggcccga actccacgac ctctccgagg tacatgaacg
     2401 cggtgtactg cgagatgcgc gctgcctgct gcatgttgtg cgtgacgatg acgatggtga
     2461 agtcccgctt cagttcgtcg atgagttcct cgatcttgcc ggtcgagata ggatcgagcg
     2521 ccgaggtcgg ctcgtcgagg aggatcacgt cgggcccctg cgcgatggcg cgcgcgatgc
     2581 agaggcgctg ctgctgcccg cccgagatgc cggtgcccga ctgcttgagc ttgtccttga
     2641 cctcgtccca cagcgccgcc cggcgcaggg cttcctcgac acgggcatcg acctcggccc
     2701 gcggcagccg accgtcgagg cgcaggccga aggcgacgtt gtcgtagatc gacatgggga
     2761 acggcgtcgg cttctggaac accatgccga cgcgggcgcg cagctcgttc acgtccatct
     2821 ccggcgagag cacgttgcgg ccgtcgagga tgacctcgcc ggtggcgcgc tgctcgggat
     2881 agaggctgta gatgcggttg aacgtgcgca ggagcgtgga cttgccgcag ccggacggac
     2941 cgatgagcgc cgtcacctcg cggtcgtgga agtcgaggtc gatgctcttc agggcgcgga
     3001 agtcgccgta gtagaagtcg agcttgcgca ccgcaatgcg cacgggcccg gcggcgccag
     3061 cggccggatg ggcggtcacg gtgggggctg cggacaggac ggcttcactc atcgggcggc
     3121 ttttcggttg aggtacaggc gcgctcccac ggagagcgcc aggacagcgg ctgtaatgag
     3181 gagcgccccc gcccaggcga ggccctgcca attgtcatag ggcgagagcg cgaactggaa
     3241 gatcgtcacg ggcaggttcg acacgccgcc gagcagcgtc gggctgaacc agaagctgtt
     3301 gttgagggcg gtgaacagga gcggcgccgt ctcgccggcg atgcgggcga gcgccaggag
     3361 gatgccggtg acgatgccgg cgcgcgcggc gcgccaggtg acccgacgga tgacgaagga
     3421 cggcggggcg ccaagggccg cgccggcctc ccgcatggtg ctcggcacga ggcgcagcat
     3481 gtcttccgtg gttcgcacga tcacgggcgt ggcgatgacc gcaagggcca cgccgccggc
     3541 ccagcccgag tagccgccca tgggctgcac catgacagtg tagacgaaca gcccgatgag
     3601 gatcgacggc gcggcaagca gcacgtcgtt gacgaagcgg atgacggtcg caaggcgcga
     3661 ggtccggccg tactcggcaa gataggtgcc ggccatgagc ccgatcgggg tcgcgacggc
     3721 gatgccgagg cacgtgagca cgatgctgcc gacgatggcg ttggcgagcc ctccgccctc
     3781 gctgcccggc cccggcgtga cctcggtgaa gatgcggggc gtgagcgccc ccaggccctt
     3841 ccacgccagc atgccgagga tccagccgag gacgaagacg ccgagggcgg tgaagacgac
     3901 gcacatgacc ttcatggcgc ggtcggccac gcgccgcgag gaacgcacgc ggccccaagt
     3961 gggcgcggat gccggcacgg tcgcggctgg agcgcctccc gttgcggcca tgtcagtaga
     4021 ccttcacgcg cgcaatgagc gcgcgcgcga ccgcgaggac cacgaaggtc accacgaaca
     4081 gcacgcagcc gagcgcgatg agcgcgctca tctgcagccc gagcgcctcg ttgaactcgt
     4141 tggcgatgcg cgacgcgatg gtgctgcccg gctcgaagat cgaggccgag agccggttgg
     4201 cgttgccgac cacgaaggtc accgccatgg tctcgccaag ggctcgcccg agccccagca
     4261 tgatggcgcc gatgatcgac acgcccgcct gcggcacgag cacgtggcgc accacctccc
     4321 aggtggtgca gccgatgccg taggcgctct cgcgcagcac cgtcgggatc tggtcgaaca
     4381 tgtcccgggt cacggaggcg atgaacggga tgatcatgaa ggcgaggatg acgcccgccg
     4441 tggcgatgcc ggtgccggag ggcacctgcg agtagaggat ggtgccgacg atcggcatgc
     4501 cctcgacaac ctgattgagc ggcacctgga cgtacgccgc gacgagcggc gccagcacga
     4561 acaggcccca catgccgtag acgatgctcg ggacggccgc gaggatctcc accgccgtcc
     4621 cgatcgggcg cttgagccat ggcggcgaca gctgcgtcag gaacaccgca atgccgaggc
     4681 tgatcggaac cccgagcacc agtgcgatga gcgcggtgga gagcgtcccc gcgatcgccg
     4741 gccaggcccc gtagcggtcg ttgttcacgt cccaagtcga gccggtgatg aagtccacga
     4801 gcccgaactc gcgaaacacc ggccagccgc cgtacagcat ggacgccagt atcccgacga
     4861 gcacggtcag cacgaggagc gcgcaagcca gagccgccgc ccggaacacc tggtccgaga
     4921 cggcgagcgc gggacgccgc ggggatgcgg cttgaggcag ggcgaggtcg ccctgcccca
     4981 cactccccgc gcttacctgc gtatgcatgc ctgcttaagt ctcggctcgg atcagctggg
     5041 cttgcccggg aacagtggct tgccggactt gtccttgatc tccttcgccc aaacgccgcg
     5101 cacctggtcg gcgacggcgt ccggcagcgg cacgtagtcg aggtcggccg cgagtgcgtc
     5161 gccgctcttg taggcccagt cgaagaactt caggacctct gcgacctgct cgggcttgtc
     5221 gggactcttg tagaccagga tgaaggttgc ccccgtgatc ggccaagcct gcgcgccggc
     5281 ctggttgacg agcgagatgc cgaagcccgg cgccgagttc cagtccgcgt tcgcggccgc
     5341 cgccgcgaag gtcttgtcgt cgggcgccac gaaggcaccg tccttgttgc gcatctgcgc
     5401 caccggcatc ttgttctgct tggcgtaggc gtactcgacg tagccgatgg cgttcacgac
     5461 ctgcttcacg gtcgccgcga cgccctcgtt gcccttgccg ccctggccga ccggccagtt
     5521 caccgtggtg ccggtgccga gctgctgctt ccagtccgcc gatgcattcg agaggtagtc
     5581 ggtgaagatg ctcgtcgtgc ccgagccgtc cgagcggtag accggcgtga tgttggcgtc
     5641 gggcaggctg acgccctggt tcagctcggc gatgcgaggg tcgttccacc tcttgacctg
     5701 gccgcggtag atgtcggcga ggatctcgcc cgagagcttg agctgcccgt cctggatgcc
     5761 ctggacgttg acgatcggca cgacgccgcc gagcaccgtc gggaactgta ccaaccccga
     5821 cttctcgagg tcgtcgccct tcagcggcga gtcggtcgcc ccgaaatcga ccgtcttggc
     5881 cttgatctgc cggatacccc cgcccgagcc gatcgactga tagttcaggc cggtcccggt
     5941 ctccttcttg taggcctcgg cccacttcga atagagcgga aacgggaagg ttgcgccggc
     6001 gccggtgatg tcggcggcag cggcgggcgc agacgccccc gcgagagcaa gcgccgtccc
     6061 aaaaatcgca tgatgaagct tcacgaaagg tctccagctt cgctggccca ccctcgagcg
     6121 ccggatgcgc gagaggcctg agcgatgccc gattacgacc cttcgatgac acttgcatga
     6181 caacccctgc gaccgcggat gccgattgga cggcagcgac gctttccgtc atgcagctgt
     6241 catgtacgtc ggtgtaatgc cggatggcgc tcgcagaccc ccattaagag cgcggtcggg
     6301 gagagccgcg gatgtaacgg cctccccgtt tctgtttcgg agcacgctgc aggagggtga
     6361 ccgtggacgt gatcatctac cacaacccgc agtgcggcac gtcgcggaac gctctcgggc
     6421 tcatccgcaa tgccggaatc gagccgcacg tcatcgagta cctgaagacg ccgccgacgc
     6481 gggcactgct gttgcagttg attcggcgga tggggatcgc cgtccgtgat ctcgtgcgag
     6541 agaagggaac cccgttccat gaccttgggc tcgacaggcc cggcgtaggc gacgacgagc
     6601 tcctggatgc catggtcgcc cacccgatcc ttatcaaccg gcccatcgtg gtggcagcca
     6661 atggcgtgaa gctctgccgt ccttcggagg ccgtgctgga catccttccg acgccacaac
     6721 ggggcgagtt cacgaaggag gatggcgagg tcgtcatcga cgccgccggc cgtcgcgtcg
     6781 cgactgcatg agcgccatgc cgcgatcgag gcggctcgtc gccgaaggcc tcgggaccgg
     6841 ccttttggtc gcgaccgtcg ttggttcggg catcatggcc gccaagctcg cggccggaaa
     6901 cgtcgcgctg gcgctgctcg gaaacaccct gccgacgggg gcaatcctcg tcgtgctgat
     6961 cctcgccctc gctcccatct ccggcgccca tttcaatccg gcggtcagct tggccgtggc
     7021 cctttcgggt gggctgccgt ggcgcgatct cgccccatat gtcgccgtcc aggtcgtcgg
     7081 cggatgcctc ggcaccctcg cggcgcacgg catgttcgag cttccgctct ttcagaccgg
     7141 cgtcacgacc cgcagcgggg cggctcagtg gttcgcggag ttcgtcgcga cgtttggtct
     7201 gctcgtgatc attcttgccg tggtgcggtt ccggatcgag gcgattccga tggcggtcgg
     7261 cctctacatc acggccgcct attggttcac ggcgtcgacc tcgttcgcca accctgccgt
     7321 cacggtggcc aggggcttta cgagcacctt cgcgggcatc gccctgggcg atgtgccgat
     7381 gttcgtcttg gctcagctcg ccggcgccat ggcggcgctg ggcttgatgc gctggctcct
     7441 cccgtccggg caaacggccc gggatggttg agcgcgcagg cttcaggctt gtgtcgggtg
     7501 ggcgtcacca gccggaa
//
LOCUS       DASQWN010000085         2315 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_801543, whole genome shotgun sequence.
ACCESSION   DASQWN010000085 DASQWN010000000
VERSION     DASQWN010000085.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2315)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2315)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2315
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_801543"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            284..1207
                     /locus_tag="VE686_01660"
     CDS             284..1207
                     /locus_tag="VE686_01660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012332165.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ROK family protein"
                     /protein_id="HYY83189.1"
                     /translation="MLIGVDFGGTKIEAVALLPAGETLARKRVPTPRDDYAASIAAVA
                     DLVADLEAATGARGSVGIGIPGAISADTGLVKNANSTWIIGRPLASDLEATLGRPVRL
                     ENDANCLAVSEATDGAGAGAHVVWAVILGTGVGSGIAIDGRALAGRNRIAGEWGHNPL
                     PWPQADELPGPPCYCGDHGCIETFLSGPGFAADYRRRTGASARAEEIMAAVRAGDAAA
                     RESFERYLDRLARGIAHVVNILDPDAIVLGGGMSDIDELYPALPERVAPHVFSDSFTT
                     PIVKSRHGASSGVRGAAWLWKEGAAGAHQQV"
     gene            complement(1192..1965)
                     /locus_tag="VE686_01665"
     CDS             complement(1192..1965)
                     /locus_tag="VE686_01665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006611404.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HYY83190.1"
                     /translation="MYKERFDLTGRNALVTGGGRAIGLASAEALAEAGARVVIADYDA
                     EVAQSGLAYLEAKGYAAEVVILDVTDSGAVDETAARFARDGRAVDILVCNAGIARSGT
                     PAEEVTDEHWRNVLDVNLNAVFWCCRSFGRHMLQAGRGAIVNVGSMSGFIVNKPQPQS
                     YYNASKAGVHHLTKSLAAEWAGRGVRVNAVAPTYINTPLNDFVKSRPEMYGAWIGGTP
                     MGRMGEPEEVASVVLFLASDAASLLTGTVVLADGGYTCW"
     gene            complement(2015..>2315)
                     /locus_tag="VE686_01670"
     CDS             complement(2015..>2315)
                     /locus_tag="VE686_01670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012252177.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HYY83191.1"
                     /translation="FIIGIWADGFEKLQLVPLLIVTPLTFLGGSFYSIDMLPPFWRTV
                     TLFNPVVYLVSGFRWSFYGIADVSVGISLAMTLVFLAACLAVVTWMFRTGYRLKT"
BASE COUNT          357 a          805 c          802 g          351 t
ORIGIN      
        1 gagttgttga agtcgttcga gaggccgttg atcacctcgg cgttgccgcc cgtctgggcg
       61 tgccaccact ggatctccgt ctgcgcgagg gccggcgagg cgaacgcgag cgcagcggcc
      121 acaatcgtgc atggcttcag catgtaagac cctcccttga tcccctcggg atcgttcttc
      181 attgatggac taccctagca cgaagcccgg gtgacggttc aatggcgttt cggcgacttt
      241 ttgctcgctt tcccggctct gatgggtcgg cgatggccaa cgcatgctga tcggggtcga
      301 tttcggcggc acgaagatcg aggcggtcgc ccttttgccc gccggcgaga cgctggcgcg
      361 caagcgcgtc ccgacccccc gcgacgacta cgcggcaagc atcgccgccg tcgcggatct
      421 cgtggccgac ctggaagccg ccaccggcgc ccgcggctcg gtcgggatcg gaatcccggg
      481 ggcgatctcg gccgacacgg gcctggtgaa gaacgccaac tccacctgga tcatcgggcg
      541 gcccctcgcg tcggacctcg aggcgacgct aggccgtccg gtgcggctcg agaacgacgc
      601 caactgcctc gccgtctcgg aggcgaccga tggcgccggg gcgggtgcgc acgtagtctg
      661 ggccgtgatc ctcggcacgg gcgtcggctc ggggatcgcc atcgacgggc gggcgctggc
      721 ggggcgcaac cggatcgcgg gcgaatgggg ccacaacccc ctgccctggc cgcaagcgga
      781 cgagctgccc ggcccgccgt gctactgcgg cgaccacggc tgcatcgaga ccttcctctc
      841 cggcccgggc ttcgccgccg actaccggcg ccgaacgggc gcaagcgcca gggccgagga
      901 gatcatggcc gccgtgcggg ccggcgacgc cgcggcccgc gagagcttcg agcgctacct
      961 cgaccgcctc gcccgcggca tcgcccacgt ggtcaacatc ctcgatcccg acgccatcgt
     1021 cctcggcggc ggcatgtcgg acatcgacga gctctacccc gctctgccgg agcgcgtcgc
     1081 ccctcacgtc ttctccgaca gcttcacaac ccccatcgtc aaaagccgcc acggcgcttc
     1141 gtccggcgtt cgcggcgcgg cgtggttatg gaaggaaggg gcggccgggg ctcaccagca
     1201 ggtgtaaccg ccgtctgcga ggacgacggt accggtgagg aggctcgcgg cgtcggaggc
     1261 caggaagagg acgacggagg cgacctcctc gggctcgccc atgcggccca tgggagtgcc
     1321 gccgatccac gcgccgtaca tctccggccg cgatttcacg aagtcgttga ggggcgtgtt
     1381 gatgtaggtc ggcgcaactg cgttgacgcg cacgccgcgc cccgcccact cggccgcgag
     1441 cgacttcgtc agatggtgca cgccggcctt ggaggcgttg tagtagctct gcggctgcgg
     1501 cttgttgacg atgaagcccg acatcgagcc gacgttgacg atggcgccgc gcccggcctg
     1561 cagcatgtgg cggccgaaag agcggcagca ccagaacacc gcgttgaggt tgacgtcgag
     1621 gacgttgcgc cagtgctcgt ccgtaacctc ctcggccggc gttccgctgc gcgcgatgcc
     1681 ggcgttgcac acgaggatgt ccactgcgcg gccgtcccgg gcgaaacgcg ccgcggtctc
     1741 gtcgaccgcg cccgagtcgg tcacgtcgag gatcacgacc tcggcggcgt agcccttggc
     1801 ctcgagatac gcgaggccgc tctgggccac ctccgcgtcg tagtcggcga tgacgacgcg
     1861 ggcgccggcc tccgcgagcg cttcggccga ggcgagcccg atcgccctgc cgccgcccgt
     1921 gacgagggcg ttgcgcccgg tgagatcgaa ccgctccttg tacatccgct tcctgcctcg
     1981 ctgatgccgc acgctagctc ggcgccgcgt ctactcaagt cttgagccgg tacccggtcc
     2041 ggaacatcca ggtcacgaca gcaaggcacg cggctaggaa caccagcgtc atggcgaggc
     2101 tgatcccgac gctgacgtcg gcgatgccgt agaagctcca gcggaagccg ctgacgagat
     2161 agaccacggg gttgaacagc gtcaccgtgc gccagaaggg cggcagcatg tcgatcgagt
     2221 agaagctgcc gccgaggaag gtcagcggcg tcacgatcag gagcggcacg agctgcagct
     2281 tctcgaagcc gtcggcccag atgccgatga tgaag
//
LOCUS       DASQWN010000086         2728 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_710407, whole genome shotgun sequence.
ACCESSION   DASQWN010000086 DASQWN010000000
VERSION     DASQWN010000086.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2728)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2728)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2728
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_710407"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..785)
                     /locus_tag="VE686_01675"
     CDS             complement(<1..785)
                     /locus_tag="VE686_01675"
                     /inference="COORDINATES: protein motif:HMM:NF025104.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyl-phosphate glucose
                     phosphotransferase"
                     /protein_id="HYY83192.1"
                     /translation="MSGVDIRDLMEAAATVDHAVPAVGPGGRAPATIPEVEAPTGPTG
                     SLSPVVLTGAVRLFEFVLVLGTGLLVHRWWLADAGALDAVYVAAFVALSVMTVLVFQA
                     VGAYTVPALRTFVTYGLRIVAGWSLVFLITLAAVFFAKMGDNLSRVWLAAWYVVGLTS
                     LMLERLALSVAVTAMTRRGRFDRRTAIVGGGPLAEAVIRALEAQADTGIRIVGVFDDR
                     AEDRSPEVIAGYPKLGGVSDLVGYARKTKLDLVIFTLPISAETR"
     gene            complement(863..2038)
                     /locus_tag="VE686_01680"
     CDS             complement(863..2038)
                     /locus_tag="VE686_01680"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019903838.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 4 protein"
                     /protein_id="HYY83193.1"
                     /translation="MSYRILHVFRAPLGGLFRHVLDVARAQAEAGHHVGIFCDSTTGG
                     ERADQILGDLQPRLKLGVTRVPMARNPNPRDLAALAALARLYRDVEANVLHGHGSKGG
                     AYARLVASRSLGAATVRAYTPHGGSFNYKPGSFLHGLYMQAEAILARRTDVFLFESAY
                     VAGRFKEFVGDTDRVVRVVLNGIGESEFEPLARAPDPFDLVYVGELREAKGIETLIEA
                     VATLRRRGTRLTLLVVGSGPSDAALKQMARDQGIWDSVAFAPPQPIRAALGRGRVMVI
                     PSRAESLPYVILEAAAASQPLVATHVGGIPEIFGPYAGELIAPGDPLVLAEAITAKLS
                     ESEDVRLGKAKALSDFVRCRFSLEGMVDGVLAGYGAAFEARGIRAETPVSEVALKVP"
     gene            complement(2076..2639)
                     /locus_tag="VE686_01685"
     CDS             complement(2076..2639)
                     /locus_tag="VE686_01685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012332769.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_component: GO:0042597 - periplasmic space [Evidence
                     IEA];
                     GO_function: GO:0015159 - polysaccharide transmembrane
                     transporter activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide biosynthesis/export family
                     protein"
                     /protein_id="HYY83194.1"
                     /translation="MNRRSALLLVLGATLSASACTTAHYDGRVAAQWASAPYTLASGD
                     KLRIIVFGQDTLSNIYAVDGAGRISMPLIGPVQVAGRSTSDAAQAIEAKLRAGFLREP
                     RVTVEVDSYRPFFVLGEVTNSGQFPFVNGMTVQTAVAIAGGFTPRALRTSAEITRQTA
                     QGPVSAKVPVTYAVRPGDTIVIGERWF"
BASE COUNT          477 a          906 c          974 g          371 t
ORIGIN      
        1 cgggtctcgg ccgagatcgg cagcgtgaag atgacgaggt cgagcttcgt cttgcgggca
       61 tagccgacga ggtcggagac gccgccgagc ttcggatagc ccgcgatgac ctcgggcgag
      121 cggtcctccg cccggtcgtc gaacacgccg acgatgcgga tgcccgtatc ggcctgagcc
      181 tcgagggccc ggatgacggc ctcggcaagg gggccgccgc cgacaatggc ggtgcggcgg
      241 tcgaagcgcc cgcgccgagt catggccgtg accgcaacgg acagcgcgag gcgctcgagc
      301 atgagcgacg tgaggcccac gacgtaccag gcagcgagcc agacccggga gagattgtcg
      361 cccatcttgg cgaagaacac cgccgcgagg gtgatgagga aaaccagcga ccagccggcg
      421 acaatcctga gtccgtaggt cacgaacgtg cgcagtgccg gcaccgtgta ggcgccgacg
      481 gcctggaaca cgaggacggt catcacggaa agggcgacga aggctgcgac gtagacggca
      541 tcgagcgcac cggcatccgc cagccaccaa cggtggacga gcaagcccgt cccgagcaca
      601 aggacaaact cgaacagccg cacggcgccg gtaagcacga cgggcgagag gctgcccgtc
      661 ggcccggtag gggcttcaac ttcggggatc gtcgcaggcg cgcggccgcc agggcccacc
      721 gccggaacgg catggtcgac ggttgctgcc gcctccatga gatcgcgaat atcgacgcca
      781 ctcatcgcaa aagaacctga cgaaccgctc cggccggcga agcgcctgcc gatcccagcg
      841 tcgagaggct actgcgcgag gctcacggaa cctttaacgc gacctccgag accggtgtct
      901 cggcgcggat gccgcgcgcc tcgaacgcgg cgccgtaccc ggcaagcacc ccgtcgacca
      961 tgccttcgag ggagaaccgg cagcggacga agtcgctcag cgccttggcc ttgccgagcc
     1021 ggacgtcctc gctctccgac agcttcgcgg tgatggcctc ggccaggacg agcgggtcgc
     1081 cgggcgcgat cagctcgccg gcgtacggcc cgaagatctc cggaatgccg cccacgtgag
     1141 tggcgacgag gggctgcgag gcggcggcgg cttcgaggat gacatagggc aaggactcgg
     1201 cgcgggacgg gatcaccatc acgcgcccgc ggccgagcgc cgcccggatc ggctgcggcg
     1261 gcgcgaacgc gaccgagtcc cagatgccct ggtcgcgcgc catctgcttg agagccgcat
     1321 cgctcgggcc cgagccgacc accagcaacg tcaggcgggt gccgcgccgg cgcagagtcg
     1381 ccaccgcttc gatgagggtc tcgatgccct tggcttcgcg cagctcgccg acatagacca
     1441 gatcgaacgg gtcgggcgcg cgcgccaggg gctcgaactc actctcgccg attccgttga
     1501 gcacaacccg cacgacgcgg tcggtgtccc cgacgaattc cttgaaccga cccgccacgt
     1561 aggcgctctc gaaaaggaat acgtcggtgc gtcgggcgag gatcgcttcg gcctgcatat
     1621 agaggccgtg caggaagctt cccggcttgt agttgaagct gccgccatgg ggcgtgtagg
     1681 cccggaccgt cgcggcgccg aggcttcgcg aggcaacgag ccgggcatag gcgccgccct
     1741 tggacccgtg cccgtgcagc acgttggcct ctacgtcccg gtagagccgc gcgagagccg
     1801 ccagcgccgc gaggtcacgc ggattcgggt tgcgtgccat gggcacgcgc gtgacgccga
     1861 gcttgaggcg gggctgcagg tcgccgagga tctggtcggc acgctcgccg cccgtggtcg
     1921 agtcgcagaa gatgccgacg tggtgcccgg cctccgcctg cgcgcgtgca acgtcgagga
     1981 cgtgccggaa caagccgccg agcggggcac ggaagacgtg caggatgcga tagctcacga
     2041 cggacaggct cctgcgggaa ggggcgctgc gccgctcaga accagcgctc gccgatgacg
     2101 atggtgtcgc ctgggcggac cgcgtaggtc acggggacct tggcggagac cggcccctgc
     2161 gctgtctggc gcgtgatctc ggccgaggtg cgcaaggccc gcggcgtgaa cccgccggcg
     2221 atcgcgacgg cggtctgaac ggtcatgccg ttgacgaacg gaaactggcc ggagttcgtg
     2281 acctctccga gaacgaagaa cgggcggtac gagtcgacct cgacggtgac ccgcggctcg
     2341 cgcaggaagc cggcgcgcag tttcgcctcg attgcctgcg ccgcgtctga ggttgagcgg
     2401 cctgccacct ggaccgggcc gatgagcggc atggagatgc gccctgctcc gtcgacggcg
     2461 tagatgttcg acaaggtgtc ctgcccgaac acgatgatgc gcagcttatc gccgctcgcg
     2521 agggtatagg gcgcacttgc ccattgggcc gcgacccgcc cgtcgtaatg cgcggtggtg
     2581 caggcggacg ctgaaagcgt cgcgccgagg acgagaagaa gggccgagcg ccgattcatt
     2641 gctcaaaccg ttgagttgac cattcctctg ctagctcatg cgtagttaac aatgctttgc
     2701 gcacctgccg cgcagcgcag tttgccta
//
LOCUS       DASQWN010000087         2328 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1008125, whole genome shotgun sequence.
ACCESSION   DASQWN010000087 DASQWN010000000
VERSION     DASQWN010000087.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2328)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2328)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2328
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1008125"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(108..431)
                     /locus_tag="VE686_01690"
     CDS             complement(108..431)
                     /locus_tag="VE686_01690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018263628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY83195.1"
                     /translation="MRLAGVLTAAAAVVIAATTAEARPARCSTSDDGAYPCDFRATGR
                     DGSFVISARGKPTYYVNTNGAGGAFVHADFGTGRNVALPGPYVRSRADRACWVYEGKS
                     RICAW"
     gene            complement(428..2038)
                     /locus_tag="VE686_01695"
     CDS             complement(428..2038)
                     /locus_tag="VE686_01695"
                     /EC_number="4.1.1.49"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012330214.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004612 - phosphoenolpyruvate
                     carboxykinase (ATP) activity [Evidence IEA];
                     GO_process: GO:0006094 - gluconeogenesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoenolpyruvate carboxykinase"
                     /protein_id="HYY83196.1"
                     /translation="MDNIGVFNGAHGAEAFGFRKLQRVFWNLGAPVLYEEAVKRGEAR
                     VVEGGPLLAETGVHTGRSPRDKYVVRDASTEREVWWDNNAPFSTEQFDLLLEDFKKHA
                     EGKELFAQDLYGGADHAHRVKARVFTEYAWHSLFIRNLLIRPPAEEVPGFIPDLTIVD
                     LPSFRADPARHGCRSETIIAIDFTRKIVLIGASSYAGEMKKSVFTYLNYVLPKQGVLP
                     MHCSANVGDGGDTALFFGLSGTGKTTLSNDPDRCLLGDDEHGWSPQGVFNFEGGCYAK
                     TIRLSREAEPEIYATTERFGTVLENVVVDPLTRRPDFDDASLTENARCAYPIDFISNA
                     SESGKAGHPKNVVMLTCDAFGVLPPIAKLTGAEAMYHFLSGYTAKVAGTEKGLKGPEA
                     TFSTCFGAPFMPRHPSVYGNMLRDLIARHHVDCWLLNTGWTGGGVGTGRRMPIRVTRR
                     LLTAALDGSLSRADFRRDPYFGFAVPTSVPGVEPHILYPVKTWQDKAAFAETAKQLVD
                     MFKKNFKRFEDHVDADVKAAEPTMSIAA"
BASE COUNT          379 a          756 c          815 g          378 t
ORIGIN      
        1 gccacgacgg cgtaggcctg gcggagagga tcagcgagcg aatctggcga acggtccatg
       61 ctgccaacgg gcacaagcgt ggttaacacc gtgcaaacgc acgcccgcta ccaggcacag
      121 atccggctct tcccctcgta gacccagcag gcccggtccg ccctgctgcg gacgtaaggc
      181 cccgggaggg cgacgttccg cccggtgccg aaatccgcgt gcacgaaggc gcctccagca
      241 ccattcgtgt tgacgtagta ggtcggcttc ccgcgcgccg agatcacgaa gctgccgtcg
      301 cgccccgtgg cgcggaaatc gcacggatag gccccgtcgt ccgacgtgga gcatcgcgcg
      361 ggtcgcgcct ccgccgtcgt tgcagcaatc acaacggctg ctgcggccgt cagaaccccg
      421 gcaagcctca tgcggcgatc gacatggtgg gctcggccgc cttcacgtcg gcgtcgacgt
      481 ggtcctcgaa gcgcttgaag ttcttcttga acatgtcgac gagttgcttc gccgtctcgg
      541 caaaggccgc tttgtcctgc cacgtcttca ccgggtagag gatgtgcggc tcgacgcccg
      601 gtaccgaggt cggcaccgcg aagccgaaat acggatcgcg gcggaagtcg gcgcgcgaga
      661 gtgagccgtc gagggcggcc gtaagcagtc gccgcgtaac gcggatcggc atgcgccgac
      721 cggtacccac gccgccgcca gtccagcccg tgttaaggag ccagcagtcg acgtgatggc
      781 gggcgatgag gtcgcgcagc atgttgccgt aaacggaagg gtggcgcggc atgaacggcg
      841 cgccgaagca ggtcgagaag gtcgcctccg gacctttcag gcccttctcg gtcccggcga
      901 ccttggcggt gtagccggac aggaagtggt acatcgcctc ggcgccggtg agcttggcga
      961 tcggcggcag cacgccgaag gcatcgcagg tgagcatcac cacgttcttc gggtgcccgg
     1021 ccttcccgct ttcgctcgcg ttcgagatga agtcgatcgg gtacgcgcag cgtgcattct
     1081 cggtcagcga cgcgtcgtcg aagtcgggtc tacgggtgag cgggtcgacg acgacgttct
     1141 cgagcaccgt gccgaagcgc tccgtggtcg cgtagatctc cggctccgcc tcgcgcgaga
     1201 gccggatcgt cttggcgtag cagccgccct cgaagttgaa gacgccctgc gggctccagc
     1261 cgtgctcgtc gtcgccgagg aggcagcggt ccgggtcgtt cgagagcgtc gtcttgccgg
     1321 tgccggacag gccgaagaac agagcggtgt cgccgccgtc gccgacgttc gccgagcagt
     1381 gcatcggcag cacgccctgc ttaggcagca cgtagttgag gtacgtgaat accgacttct
     1441 tcatctcgcc cgcgtacgag ctcgcgccga tgagcacgat cttgcgcgtg aaatcgatgg
     1501 cgatgatggt ctcggagcgg cagccgtgcc gggccgggtc ggccctgaac gagggcaggt
     1561 cgacgatggt gaggtcggga atgaagcccg gcacctcttc ggccggcggc cggatcagaa
     1621 ggttgcggat gaacagggag tgccacgcgt actcggtgaa gacccgtgcc ttgacgcgat
     1681 gcgcatggtc ggcgccgccg tagagatcct gggcgaagag ctccttgccc tccgcgtgtt
     1741 tcttgaagtc ctcgagcagg agatcgaact gctcggtcga gaacggggcg ttgttgtccc
     1801 accagacctc gcgctccgtc gaggcgtcgc gcacgacgta tttgtcgcgg ggcgagcggc
     1861 ccgtatggac gcccgtctcg gcaagcagcg ggcctccctc gacgacgcgg gcctcgccgc
     1921 gcttcacagc ttcctcgtac aggaccggcg cgccgaggtt ccagaaaacg cgctgaagct
     1981 tgcggaagcc gaaggcctcg gcgccgtgcg cgccgttgaa cacgccgatg ttgtccacgg
     2041 gtggtcctcc tgatcgccgc tcgcggctcg agcgtgtcgt tgtcgggctg gcgccgcgcc
     2101 gacgacaacg gcgaagcttg catgtttgtt cgggcgggac ggaggagacc ctccgctcca
     2161 ggcgggccca ccttcaacag gaacgccagc gtggccgtca ataggattgt gccggaaacc
     2221 ctaccggtgg ctcagccgcg cgcgcgagcc tcatctgcga gggctttcag cacggcccgc
     2281 agcgggccgg gaccatcgac gcggtgcgga aaccggacgc gggcggtg
//
LOCUS       DASQWN010000088         3417 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1107497, whole genome shotgun sequence.
ACCESSION   DASQWN010000088 DASQWN010000000
VERSION     DASQWN010000088.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 3417)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3417)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3417
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1107497"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            122..1267
                     /locus_tag="VE686_01700"
     CDS             122..1267
                     /locus_tag="VE686_01700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007607715.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mandelate racemase/muconate lactonizing enzyme
                     family protein"
                     /protein_id="HYY83197.1"
                     /translation="MKITDIKTYVLKTPLEEPFAFAMGWVRQRGTMIVEVVTDEGVSG
                     WGESLCHGLQPPEIAQTIVDVALKPILIGQDPFDVDVLWERMYNLTRPFGQKGAVPNA
                     MASVDIAIWDCLGRALGKPVHKLLGGAYRTEVQPYATGFYRVEGKSYPEAAIEEAKRH
                     IARGFSAMKLKIGFGVEEDIAYVRAVREAIGPGPKLMVDANHAYNVSAARRILMAIEP
                     FDIHWFEEPISPEDIDGYRELKSLTSIYLAAGENEFTKVGFREWVSKRAVDILQPDLC
                     SAGGFTECRKISVLAQAWHMMLIPHVWGSGIGLAASLQFLATVPPAPLALKPIEPMLE
                     YDQSSHPFRQDLIFDAIAMRDGKVQVPSGPGLGIQVNRDVIERYRQR"
     gene            complement(1279..2052)
                     /locus_tag="VE686_01705"
     CDS             complement(1279..2052)
                     /locus_tag="VE686_01705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012320207.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-CoA hydratase-related protein"
                     /protein_id="HYY83198.1"
                     /translation="MTDQLKFSVDDGIGRIVLNRPERMNAFTFEMIDAWRAAIEECRR
                     DDAVKVVIVTGAGSAFCSGGDIVEMGDRLEQTPEQRKAELFDRIERIPLALEDLDKPV
                     IAAVNGVATGAGMDMALMCDLRYAAQGARFAETYVNVGLVPGAGGAHFLPRLVGVAKA
                     LELFWTGDFIDAQEAMRIGIVNQVFPVADLMAEVEKIARKIAKAPPLTLRMVKRAIYQ
                     GMRNDLRTNLDLISSHYAVITATDRHKEAVRFFIAKRGG"
     gene            complement(2067..3254)
                     /locus_tag="VE686_01710"
     CDS             complement(2067..3254)
                     /locus_tag="VE686_01710"
                     /EC_number="2.8.3.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020093153.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CoA transferase"
                     /protein_id="HYY83199.1"
                     /translation="MTDTTPRDGPLGGIRVVDLTSVIMGPLATHVLADLGADVIKVEA
                     PEGDSLRNYRPLRNHGMAGNFLHLNRNKRSVVLDLKSEEGRAALDRLIETADVFVHAI
                     RPQAIAKLGYTYDKVRALKADIVYCGAYGFSAQGPYGDKAAYDDLIQAGCGIASLFVE
                     REGAPAYVPTVLCDKVAGHVIASSIMAALFQRGRGGGGQAIEVPMFETMAEFVYAEHL
                     TGFAFEPPLSKPGFNRVLSARRKPYRTKDGYACILPYSDRNWRDFFDFVGRPELKDDE
                     RFKILSVRVQHIDELYGLLEDEAVKRTTAEWVAFCDRVSIPSMPVLSLEDLPEDEHLK
                     AVGLFGSDEHPSEGRYRTIRHPVSFSGSEFRIRRHAPRLGEHTEEVLSELGLPTPGEI
                     RPI"
BASE COUNT          537 a         1155 c         1168 g          557 t
ORIGIN      
        1 ggccttggcg aggcggtgga tcgggcgagc gccgcttaga taggcgctga ggcgacccgc
       61 cgaaaccatc cgcatcggct tccgtgctat gtcgcggcga tcccgctcga gagcctgacc
      121 cgtgaagatc accgatatca agacctacgt cctgaagacg cccctcgagg agcccttcgc
      181 cttcgccatg ggctgggtgc ggcagcgcgg caccatgatc gtcgaggtcg tgaccgacga
      241 gggcgtcagc ggctggggcg agtcgctctg ccatgggctg cagccgcccg agatcgcgca
      301 gacgatcgtc gacgtggcgc tgaagcccat cctcatcggc caggatccct tcgacgtcga
      361 tgtgctctgg gagcgcatgt acaacctcac ccgccccttc gggcagaagg gcgccgtgcc
      421 gaacgccatg gcgtccgtcg acatcgccat ctgggactgc ctcggccggg cactcggcaa
      481 gccggtgcat aagctgctcg gaggcgccta ccgcaccgag gtccagccct atgccaccgg
      541 attctatcgc gtggagggca agtcgtaccc cgaggcggcg atcgaggagg cgaagcgcca
      601 catcgcgcgc ggattttcgg ccatgaagct gaagatcggc ttcggcgtcg aggaggacat
      661 cgcgtatgtc cgcgccgtgc gggaggccat cggccccggc ccgaagctca tggtcgacgc
      721 caaccacgcc tacaacgtct cggccgcgcg gcgcatcctc atggccatcg agccgttcga
      781 catccactgg ttcgaggagc cgatctcgcc cgaggacatc gacggctacc gcgagctgaa
      841 gtccctcacc tccatctatc tcgccgccgg cgagaacgag ttcaccaagg tcggcttccg
      901 cgagtgggtc tcgaagcgcg ccgtcgacat cctgcagccg gacctgtgct cggccggcgg
      961 gttcaccgag tgccgcaaga tctcggtgct ggcgcaggcc tggcacatga tgctgatccc
     1021 gcatgtctgg gggtcgggca ttgggctcgc cgcctcgctg caattcctgg cgacggtccc
     1081 gccggctccg ctggccctga aacccatcga gcccatgctc gagtacgacc agtcctcgca
     1141 ccccttccgc caggacctca tcttcgacgc gatcgcgatg cgcgacggca aggttcaggt
     1201 cccgagcggg cccggcctcg gcattcaggt caaccgcgac gtgatcgagc gctaccgcca
     1261 acgctgaccc cgctgaggtc agccgccccg cttggcgatg aagaagcgca cggcctcctt
     1321 gtgccggtcg gtcgcggtga tcacggcgta gtgcgacgag atgaggtcga ggttggtgcg
     1381 caggtcgttg cgcatgccct ggtagatggc gcgcttgacc atgcgcaagg tgagcggcgg
     1441 cgccttggcg atcttgcgcg cgatcttctc aacctcggcc atgaggtcgg cgacggggaa
     1501 gacctggttg acgatgccga tgcgcattgc ctcctgcgcg tcgatgaagt cgccggtcca
     1561 gaacagctcg agcgccttcg cgacgccgac gagccggggc aggaagtgcg cgccgccggc
     1621 gccgggcacg aggccgacgt tgacgtacgt ctcggcgaag cgcgcccctt gggcggcgta
     1681 gcgcaggtcg cacatcagcg ccatgtccat gccggccccc gtcgcgacgc cgttcacggc
     1741 ggcgatcacc ggcttgtcga ggtcctcgag ggcgagcggg atacgctcga tgcgatcgaa
     1801 cagctcggcc ttgcgctgct ccggcgtctg ctcgagccgg tcacccatct cgacgatgtc
     1861 gccgccgctg cagaaggccg agccggcgcc ggtcacgatc accaccttca cggcgtcgtc
     1921 gcgccggcac tcctcgatcg cggcgcgcca ggcgtcgatc atctcgaacg tgaaggcgtt
     1981 catgcgctcg ggccggttga gcacgatgcg cccgatgccg tcgtcgacgg agaatttcag
     2041 ctgatccgtc atccgtgttc ctcgttttaa atcggtcgga tttcgcccgg cgtcggaagg
     2101 ccgagctccg acagcacctc ctccgtgtgc tcgccgaggc gcggcgcgtg gcggcggatg
     2161 cggaactcgg atccgctgaa cgacaccggg tggcggatgg tgcggtagcg cccctcgctc
     2221 gggtgctcgt cggagccgaa caggccgacg gccttgaggt gctcgtcctc gggcaggtcc
     2281 tcgagggaca gcaccggcat agacgggatg ctgacgcgat cgcagaaggc cacccactcg
     2341 gcggtggtgc gcttcacggc ctcgtcctcg agcagaccgt agagctcgtc gatgtgctgc
     2401 acgcgcaccg acaggatctt gaagcgctcg tcgtccttga gctcggggcg gccgacgaaa
     2461 tcgaagaagt cgcgccagtt gcggtccgag tacggcagga tgcaggcgta gccgtccttg
     2521 gtccggtacg gcttgcggcg ggcactgagc acgcggttga atcccggctt gctcaacggc
     2581 ggctcgaagg caaagcccgt caggtgctcg gcgtaaacga actcggccat cgtctcgaac
     2641 atggggacct cgatggcctg accgccgccc ccccggccgc gctggaacag ggccgccatg
     2701 atcgacgagg cgatgacgtg gccggcgacc ttgtcgcaca gcacggtcgg cacgtaggcg
     2761 ggcgcgccct cgcgctcgac gaacagcgag gcgatgccgc agccggcctg gatgaggtcg
     2821 tcgtaagcgg ccttgtcgcc gtacggcccc tgcgccgaga aaccgtaggc gccgcaatag
     2881 acgatatcgg ccttgagcgc ccggaccttg tcgtaggtgt agccgagctt ggcgatcgcc
     2941 tgcgggcgga tggcgtgcac gaagacgtcg gccgtctcga tgagacgatc gagggccgcc
     3001 ctgccctcct cgctcttcag gtcgagcacg acgctgcgct tgttgcggtt gagatggagg
     3061 aagttgcctg ccatgccgtg gttgcgcagg gggcggtagt tgcggagcga gtcgccctcg
     3121 ggcgcctcga ccttgatcac gtcggcgccg aggtcggcaa gcacgtgggt cgcgagcggc
     3181 cccatgatga cgctcgtgag atcgacgacg cggatgccgc cgagtggccc gtctctcggg
     3241 gtggtgtcgg tcaagcttcg cgtcctccgt cgacggtggt gaggtgcgcg acgcgcacga
     3301 gcctgtccca gagcgcctcg ccgccttgcc cgcacaccga gcgcccgatc tcggcctccc
     3361 agaacgcctc gccaccgaac tcgtcgcgcc acgaccatag acgccgggtg gcaaagt
//
LOCUS       DASQWN010000089         3859 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_16516, whole genome shotgun sequence.
ACCESSION   DASQWN010000089 DASQWN010000000
VERSION     DASQWN010000089.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 3859)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3859)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3859
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_16516"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1334)
                     /locus_tag="VE686_01715"
     CDS             complement(<1..1334)
                     /locus_tag="VE686_01715"
                     /EC_number="2.7.7.65"
                     /inference="COORDINATES: protein motif:HMM:NF024267.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diguanylate cyclase"
                     /protein_id="HYY83200.1"
                     /translation="MTALRTLKLLLAGIIALFAAATVYTSVVIGERQEALRQTSRYNV
                     AWLASQATAEFARFVERVSSYSVPGSGIDGDEVQLRFEILLNRLKLFENGDFRAFADT
                     DPEHQRTVEAFADALPRAEPLVAAIDNPGVVLKLRAVVTPLEGKLARLAAAANRYGGE
                     LAAEDQKELLELHRTFSALAVGLICCGFALVGLLLWHNTLLGRAHRELNALTGNLRHT
                     SDQLNAALNNMSQGLCMVDKDQRLTVCNAQFVSLFDLPAAAATPGRPVTEVFQASALA
                     AGELHGISRLRDVLLHDDKAGSYTQELGDGRTIAVSHQPMADGGWVATYEDITDRRQA
                     EARIAHLAHHDVLTDLPNRALFLQRLEEALTRVRRHGESVAVISLDLDRFKSVNDTLG
                     HPVGDKLLCEVARRLIGCLRETDTVARFGGDEFAILQIGREQPRDADALARR"
     gene            complement(1366..1860)
                     /locus_tag="VE686_01720"
     CDS             complement(1366..1860)
                     /locus_tag="VE686_01720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003507019.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin-dependent oxidoreductase"
                     /protein_id="HYY83201.1"
                     /translation="MSFTRRTLALSLGMATIVVAAGVAPADTGKPILTVSGKVGAASA
                     TSFDRDALEKLGLVSFETTTPWNTGKVKFEGIPLKVLMKHVAASGNTVQALALNDYST
                     DIPMEDFEKYNVILALKRDGEYMPVRDKGPLFVVYPYDSDPELKSQKFYSRSAWQVKS
                     LIVK"
     gene            2080..2835
                     /locus_tag="VE686_01725"
     CDS             2080..2835
                     /locus_tag="VE686_01725"
                     /EC_number="3.5.4.16"
                     /inference="COORDINATES: protein motif:HMM:NF013398.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP cyclohydrolase I"
                     /protein_id="HYY83202.1"
                     /translation="MKNVVTRLVSPADANRAAAAPDPQAAVAAATGYLNQHCVARLCN
                     ESVPGLSSPLDQALLVAAAAKKLEELFDILRIDHANDHNTRDTPQRVAKMMVHETLRG
                     RYMAPPDITDFENAQGVDNLIVTGPIDLRSTCAHHMMPIYGEAFVGIVPARDGKIIGL
                     SKYDRIVDYFASRLQIQEELVKQIGNFIVEKTAPRGLAVRISAVHMCKTHRGVRAGHA
                     SRMVNTAFYGELAGDRDLQNAFMHECLALSRPS"
     gene            2853..3353
                     /locus_tag="VE686_01730"
     CDS             2853..3353
                     /locus_tag="VE686_01730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012251977.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-carboxytetrahydropterin synthase"
                     /protein_id="HYY83203.1"
                     /translation="MKHVRPEERRKAKAIVVPREVYRSTKTYDHSEGLSCCFRQWRAP
                     SHCRLMHGYALAFKFVFATDRLDERHWCFDFGGLKPIRAWLHDTFDHTMIVAQDDPSL
                     ATFQALEKEGVVALRVLPAVGCEATARYVFDHVATYVAGETDGRVWLESVEVREHGGN
                     AASYER"
     gene            complement(3363..>3859)
                     /gene="prs"
                     /locus_tag="VE686_01735"
     CDS             complement(3363..>3859)
                     /gene="prs"
                     /locus_tag="VE686_01735"
                     /EC_number="2.7.6.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007563055.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004749 - ribose phosphate diphosphokinase
                     activity [Evidence IEA];
                     GO_process: GO:0009152 - purine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="ribose-phosphate diphosphokinase"
                     /protein_id="HYY83204.1"
                     /translation="PVMVRDIKERLSGERMVVSPDVGGVVRARAIAKRIDSPLAIVDK
                     RRERAGESEVMNIIGDVRGRSCILVDDIVDSGGTLVNAAEALLADGAKEVSAYITHGV
                     LSGGAVSRIANSKMKELVITDSIQPTEAVKVARNIRVIPIAQLIGEAIGRTATESSVS
                     SLFD"
BASE COUNT          634 a         1267 c         1310 g          648 t
ORIGIN      
        1 atgcggcggg caagcgcgtc ggcgtcgcgg ggctgctcgc gtccgatctg caggatcgcg
       61 aactcgtcgc cgccgaagcg cgcgacggtg tcggtctcgc gcaggcagcc gatcaggcgg
      121 cgcgccacct cgcacaacag cttgtcaccg accgggtgcc cgagcgtgtc gttcacggac
      181 ttgaagcggt cgaggtcgag ggagatgacg gcgacgcttt ccccgtggcg gcgcacgcgc
      241 gtcagcgcct cctcaaggcg ctggaggaag agggcgcggt tcgggagatc cgtgaggacg
      301 tcgtggtggg cgagatgggc aatgcgcgcc tcggcctggc gccggtcggt gatgtcctcg
      361 taggtggcga cccagccccc gtccgccata ggctgatggg agaccgcgat cgtgcggccg
      421 tcgccgagct cctgagtgta cgagcccgcc ttgtcgtcgt gcagcagcac gtcgcgcagg
      481 cgggaaattc cgtgcagctc gccggccgcc agcgcgctcg cctggaacac ctccgttacc
      541 gggcgtcccg gcgtcgcggc tgccgccggc aggtcgaaca gcgacacgaa ctgcgcattg
      601 cacacggtca gccgctggtc cttgtcgacc atgcacaagc cctggctcat gttgttcagg
      661 gcggcgttga gctggtccga ggtatgccgc aggttgccgg tgagagcgtt cagctcgcgg
      721 tgggccctgc cgagcagggt attgtgccag aggagcaggc cgacgagcgc gaagccgcag
      781 cagatcagtc cgaccgcaag ggccgagaac gtccggtgca gctcgagcag ctccttctgg
      841 tcctccgccg ccagctcgcc gccgtagcga ttcgcggccg cggcaaggcg cgccagcttg
      901 ccttcgagag gggtgacgac cgcgcgcagc ttcaggacga cgcccgggtt gtcgatcgcg
      961 gcgacgagcg gctcggcccg cggcagggcg tccgcgaagg cctcgacggt gcgctggtgc
     1021 tccgggtcgg tatcggcgaa ggcgcgaaag tccccatttt cgaacaactt gaggcggttg
     1081 agaaggatct cgaaccgcag ttggacctcg tcgccgtcga ttccgctgcc cgggaccgaa
     1141 taggagctga cccgttcgac gaagcgggcg aactccgccg tcgcctggct ggcgagccag
     1201 gcgacgttgt accgcgaggt ttgccgcagg gcctcctgcc gctcgccgat gaccaccgac
     1261 gtgtagacgg tcgccgccgc gaacagggcg atgatccccg caagcagcag cttgagcgtg
     1321 cgaagagcgg tcatgggccc gtgcagcgtt gcagatgcgg tcgcgtcact tcacgatgag
     1381 cgacttcacc tgccaggcgg accggctgta gaacttctgg ctcttgagct cggggtcgct
     1441 gtcgtaggga tagacgacga acaacgggcc cttgtcgcgg acgggcatgt actcgccgtc
     1501 acgcttgagc gccaggatca cgttgtactt ctcgaaatcc tccatcggga tgtcggtgga
     1561 gtagtcgttg agcgcgagcg cctgaacggt gttgcccgat gcggcgacgt gcttcatcag
     1621 gaccttgagg gggatcccct cgaacttcac cttgcccgta ttccacggcg tggtggtctc
     1681 gaagctgacg aggccgagct tctcgagcgc gtcccggtcg aagctcgtgg cgctcgcggc
     1741 accgaccttg ccggagacgg tcaggatggg cttgccggta tcagcaggcg ccacgccggc
     1801 cgcgacgacg atcgttgcca tgccgagcga caaggccaat gttcgacgag taaagctgat
     1861 ggacatcatg atcccctgct gtaagaattc gtgcgggaac atcctgggtc ctgtcgccct
     1921 tgcgattcga tgaaccgatg acgttcaagc ctttctgggg ttaatcggcc gtctactaca
     1981 tacctggctt aagccgctat tcatcatctc gaattactag ggattcatac tcggcgtgta
     2041 gggctagcac gtgtttcggt gcgtttgagg ccccctctca tgaagaatgt cgtcacgcgg
     2101 ctcgtgagtc ccgccgacgc gaaccgcgcg gcagcggcgc ccgacccgca ggcagccgtg
     2161 gctgcagcga ccggatatct gaaccagcac tgtgtagcgc ggctgtgcaa cgagtccgtc
     2221 ccgggcctgt catcgcccct cgatcaggca cttctcgtcg ccgcagcggc gaagaagctc
     2281 gaagagctgt tcgacatcct gcgtatcgac cacgctaatg accacaacac ccgcgacacg
     2341 ccgcagcgcg tcgccaagat gatggttcac gagaccctgc gcggacgcta catggcgccg
     2401 ccggacatca ccgacttcga gaacgcgcag ggggtcgaca acctcatcgt cacaggaccg
     2461 atcgaccttc gctcgacctg cgcgcaccac atgatgccca tctacggcga ggccttcgtg
     2521 ggcatcgtcc cggcccgcga cggcaagatc atcgggctgt cgaagtacga ccgcatcgtc
     2581 gactactttg cgtcgcgcct ccagatccag gaggagctcg tcaagcagat cggcaacttc
     2641 atcgtcgaga agacggcgcc gcgcggtctc gcggtgcgga tcagtgccgt gcacatgtgc
     2701 aagacccatc gcggcgtgcg ggcggggcac gcgagccgca tggtcaacac ggccttctac
     2761 ggcgagctcg ccggcgaccg cgacctgcag aacgcgttca tgcacgagtg cctggcgctg
     2821 agccggcctt cgtaggcgcg ggagccgggg cgatgaagca cgtccgtccc gaggaacgcc
     2881 gcaaggcgaa ggccatcgtg gtgccgcggg aggtctaccg ctcgacgaag acctacgacc
     2941 acagcgaggg gctgtcctgc tgcttccgcc agtggcgggc accgtcgcac tgcaggctga
     3001 tgcacggcta cgcgctcgcc ttcaagttcg tgttcgccac cgatcgcctg gatgagcgcc
     3061 actggtgctt cgacttcggc ggcttgaagc cgatccgggc gtggctgcac gacaccttcg
     3121 accacaccat gatcgtcgcg caggacgatc cgagcctcgc gaccttccag gcccttgaaa
     3181 aggagggcgt cgtggcgctg cgcgtgctgc cggccgttgg ttgcgaggcc accgcgcgct
     3241 acgtcttcga ccacgtcgcc acctatgtgg cgggcgagac ggacgggcgc gtctggcttg
     3301 agtcggtcga agtgcgcgag cacggcggca atgccgcctc ctacgagcgc tgagttcgcg
     3361 acctagtcga agaggctcga caccgacgac tcggtcgcgg tgcgcccgat cgcctcgccg
     3421 atgagctgcg cgatcgggat gacgcggatg ttgcgcgcca ccttcacggc ctcggtcggc
     3481 tggatcgagt cggtgatcac gagctccttc atcttcgagt tcgcgattct cgacacggcc
     3541 ccgcccgaca acacgccgtg cgtgatgtag gcggacacct ccttggcgcc gtcggcgagg
     3601 agcgcctcgg cggcgttgac gagcgtcccg cccgaatcga cgatgtcgtc gacgaggatg
     3661 caggagcggc cgcgcacgtc gccgatgatg ttcatcacct cggactcgcc ggcgcgctcg
     3721 cggcgcttgt cgacgatggc gagggggctg tcgatgcgct tggcgatggc gcgggcgcgg
     3781 accacgccgc cgacgtcggg cgacaccacc atgcgctcgc ccgacagccg ctccttgata
     3841 tcgcgcacca tcacgggcg
//
LOCUS       DASQWN010000090         3375 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_611818, whole genome shotgun sequence.
ACCESSION   DASQWN010000090 DASQWN010000000
VERSION     DASQWN010000090.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 3375)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3375)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3375
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_611818"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..996)
                     /locus_tag="VE686_01740"
     CDS             complement(<1..996)
                     /locus_tag="VE686_01740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018641854.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter substrate-binding
                     protein"
                     /protein_id="HYY83205.1"
                     /translation="MKRVIASVAVGLAASLFATGASAQATLNSVKQKGMLTCGSNVGL
                     PGFGLPDAQGNWTGLDVDYCRAIAAAIFNDPTKVRFIPLSAKDRFTALQSGEVDLLAR
                     NSSWTMSRDTQLGLDFVATNYYDGQGFMVRKKLGVASAKELNGASVCTQQGTTTELNL
                     ADFFRSNNLKYEVVAFATADETFKAYDSGRCDAFTTDASGLYAERNRASNPDEHIVLP
                     EIISKEPLALAVRHGDNQWGDIVRWVHYALVNAEELGLTKANIDQQAKADNPEIKRFV
                     GTEGKFGETVGLTNDWAVRIIKHVGNYGEIFERNIGESSPLKIKRGINALWTKGGL"
     gene            1172..2359
                     /gene="metC"
                     /locus_tag="VE686_01745"
     CDS             1172..2359
                     /gene="metC"
                     /locus_tag="VE686_01745"
                     /EC_number="4.4.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019904031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004121 - cystathionine beta-lyase
                     activity [Evidence IEA];
                     GO_process: GO:0009086 - methionine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cystathionine beta-lyase"
                     /protein_id="HYY83206.1"
                     /translation="MAQHPSSKLAQFSERTRLVHAGRDPWEQHGFVNTPIYRGSTVLY
                     RTTDDLQHRRGRYSYGTKGTPTTDSLEKAWTSLSGAAGTVLTPSGLAAVTVGLMSCLK
                     AGDHLLVTDSVYRPTRQFCDGVLKRFGVETTYYDPLVGAAIGDLFQPNTAAVFTEAPG
                     SQSFEMQDIPAIAEVAHARGAVVLMDNTWATPLFFPPHERGVDIAIEAGTKYLSGGSD
                     LLLGLTSATKERWPALQTTFDSFAMCAGPEDVFLGLRGLRTIALRLREHERQALDMAR
                     WLQARPEVERVLHPALESDPGHAIWKRDFKGSSGLFSVVLKPVGPGALAAMLDGLELF
                     GMGYSWGGFESLVIPFDCATYRTATSWQQDGPALRFHIGLEDLEDLKADLDAGFARLR
                     ATV"
     gene            complement(2356..2691)
                     /locus_tag="VE686_01750"
     CDS             complement(2356..2691)
                     /locus_tag="VE686_01750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019197174.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008915 - lipid-A-disaccharide synthase
                     activity [Evidence IEA];
                     GO_process: GO:0009245 - lipid A biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lipid-A-disaccharide synthase N-terminal
                     domain-containing protein"
                     /protein_id="HYY83207.1"
                     /translation="MLVIQLSRDLGTYLYDVFVARFDFWLAFGIVAQLLFGARFVVQW
                     IASERAGRSVMPLMFWFFSMGGGVLTLIYGIARRDGVIIIGQALSVFIYLRNLSLIFR
                     ERREGAGLR"
     gene            complement(2691..>3375)
                     /locus_tag="VE686_01755"
     CDS             complement(2691..>3375)
                     /locus_tag="VE686_01755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020095405.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HYY83208.1"
                     /translation="EAGNVVPLLDEIERACATFGSFEVLYVDDGSADATAAELAHARA
                     TRPWLRVIRHAESCGQSAAVRTGVRAARASIVATLDGDGQNDPAFIPELVSALDRAGP
                     GIGLVAGQRLRRVGGYKKLQSRIANAVRGAVLKDGTRDTGCGLKAFRRETYLALPYFD
                     ALHRFMPALVKREGLGVAHVDVVDRPRLAGQSNYGMFDRLWVGILDLAGVWWLIRRRR
                     RVARSEELS"
BASE COUNT          537 a         1155 c         1141 g          542 t
ORIGIN      
        1 caggccgccc ttggtccaga gcgcattgat gccgcgcttg atcttcagcg gcgagctctc
       61 gccgatgttg cgctcgaaaa tctcgccgta gttgccgacg tgcttgatga tgcggacggc
      121 ccaatcgttc gtcagaccaa ccgtctctcc gaacttgccc tcggttccga caaagcgctt
      181 gatctcggga ttgtcggctt ttgcctgctg gtcgatgttc gcctttgtca ggccgagttc
      241 ctcggcgttc acaagggcgt agtggaccca gcgcacgatg tcgccccact ggttatcgcc
      301 gtggcgcacg gcaagggcga gcggctcctt cgagatgatt tcgggaagca cgatgtgctc
      361 gtcggggttc gatgcgcggt tgcgctcggc gtagaggccg gaggcgtccg tggtgaaggc
      421 gtcgcagcgt ccgctgtcgt aagccttgaa cgtctcgtcc gcggtcgcga aggcgacgac
      481 ctcgtacttc aggttattgg agcggaagaa gtcggcgagg ttgagctcgg tcgtggtgcc
      541 ctgctgcgtg cagaccgagg cgccgttgag ttccttggcg gaggcgacgc cgagcttctt
      601 gcgcaccatg aagccctggc cgtcgtagta gttcgtggcc acgaaatcga ggccgagctg
      661 ggtgtcgcgc gacatcgtcc aggaggagtt ccgggcgagc aggtcgacct cgcccgactg
      721 gagcgccgtg aagcggtcct tcgccgagag cgggatgaag cgcaccttgg tcggatcgtt
      781 gaagatggcg gccgcgatgg cgcggcagta atcaacgtcg aggcccgtcc agttgccctg
      841 ggcatccggc aggccgaagc ccggcagtcc gacgttcgag ccgcaggtca gcatgccctt
      901 ctgcttgacg ctgttgagcg tcgcctgggc ggaagcgccg gtggcgaaga ggctggccgc
      961 gagcccgacg gcgaccgatg cgatgacgcg tttcatgaaa tccgctctcc ctgttgtcgt
     1021 cgccgggcgg gtgttcccgc tccggcgcgc aagccttgcg cggcatcaca tgcgatgttg
     1081 cgggtgcggt caagcagcaa cgccagacta agcgtgcttg acggactctg cggtcgcggt
     1141 ccacatcgcc tcccctgccc aggacgacct catggcccag catccctcct cgaagctcgc
     1201 gcagttcagc gagcgcaccc gcctcgtcca cgcggggcgc gacccgtggg agcagcacgg
     1261 cttcgtcaac acgccgatct accgcggctc gacggtgctc tatcggacga ccgacgacct
     1321 ccagcaccgc cgcgggcgct acagctacgg cacgaagggc actccgacga cggactcgct
     1381 cgagaaggcc tggacctcgc tgtcgggcgc cgccggcacg gtgctgacgc cgtcgggcct
     1441 cgcggccgtg acggtggggc tcatgtcgtg cctcaaggcg ggcgaccatc tccttgtcac
     1501 cgactccgtc tatcggccca cgcgccagtt ctgcgacggg gttctgaagc gcttcggcgt
     1561 ggagacgacc tactacgatc cgctcgtcgg agccgcgatt ggcgatctgt tccaacccaa
     1621 caccgcggca gtcttcaccg aggcgcccgg ctcgcagtcc tttgaaatgc aggacattcc
     1681 cgccatcgcc gaggtcgcgc acgcgcgcgg cgccgtcgtc ctcatggaca acacctgggc
     1741 gacccccctg ttcttccccc cgcacgagcg cggcgtcgac atcgcgatcg aggccggcac
     1801 caagtacctc tccggcggct cggacctgct gctcggcctg acctcggcga caaaggagcg
     1861 ctggcccgcc ctgcaaacga cgttcgactc cttcgccatg tgcgcggggc cggaggacgt
     1921 gttcctcggc ctgcgtggcc tgcgcaccat agcgctgaga ctgcgagagc acgagcgcca
     1981 ggcgctcgac atggcgcgct ggctacaggc ccggcccgag gtcgagcgcg tgctgcaccc
     2041 ggctctcgag agcgaccctg ggcacgcgat ctggaagcgc gacttcaaag gctcctcggg
     2101 cctgttctcg gtggtcctga agcccgtggg cccgggcgcg ctcgccgcca tgctcgacgg
     2161 cctcgagctc ttcggcatgg gctactcctg gggcggcttc gagagcctcg tcatcccgtt
     2221 cgattgcgcg acctatcgca cggcgacgtc ttggcaacag gacggcccgg cgctgcgctt
     2281 tcacatcggc ctcgaggacc tcgaggacct caaggccgac ctcgacgccg gcttcgcccg
     2341 cctgcgggcg accgtctagc gcaaacccgc cccttcccga cgctcgcgga agatcaggga
     2401 caggttgcgt aggtagatga acaccgagag cgcctggccg atgatgatga cgccgtcgcg
     2461 ccgggcgatg ccgtagatca gcgtcagcac gccgcccccc atcgagaaga accagaacat
     2521 caggggcatc acgctgcggc cggcgcgctc gctcgcgatc cactggacca cgaaccgcgc
     2581 gccgaacaga agctgcgcga cgatgccgaa ggcgagccag aaatcgaagc gcgccacgaa
     2641 tacgtcgtag agataagtcc ccaggtcgcg cgacagctgg atcactagca tcaggacagc
     2701 tcctcggacc gcgccacgcg gcggcggcgc cggatcaacc accacacccc ggcaaggtcg
     2761 aggatgccga cccagagccg atcgaacatg ccgtagttgg actgcccggc gaggcgcggc
     2821 cggtcgacga catcgacgtg cgcgaccccg agcccctccc gcttgacgag agccggcatg
     2881 aaccggtgca gggcgtcgaa atacggcaga gcgagatagg tttcgcgacg gaaggccttg
     2941 aggccgcatc cggtgtcgcg ggtgccgtcc ttcaggaccg cgccgcggac cgcattggcg
     3001 atgcgcgact gcagcttctt gtagccgccg acccggcgta gccgctgccc cgccacgagt
     3061 ccgatgccgg gccctgcccg gtcgagcgcc gacacgagct ccgggatgaa ggccgggtcg
     3121 ttctggccgt cgccgtcgag agtggcgacg atgcttgcgc gcgcggcgcg gacgccggtg
     3181 cgcacggcgg cgctctggcc gcaactctcg gcgtggcgga tgacgcggag ccagggacgc
     3241 gtcgcccgcg catgcgcgag ctcggccgcc gtcgcgtcgg cggagccgtc gtcgacgtac
     3301 aggacctcga aggaaccgaa ggtggcgcag gcacgctcga tctcgtcgag gagcggcacg
     3361 acgttgcccg cttcg
//
LOCUS       DASQWN010000091         2537 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_611918, whole genome shotgun sequence.
ACCESSION   DASQWN010000091 DASQWN010000000
VERSION     DASQWN010000091.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2537)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2537)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2537
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_611918"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1217)
                     /gene="chrA"
                     /locus_tag="VE686_01760"
     CDS             complement(<1..1217)
                     /gene="chrA"
                     /locus_tag="VE686_01760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014494755.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015109 - chromate transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0015703 - chromate transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="chromate efflux transporter"
                     /protein_id="HYY83209.1"
                     /translation="MKDEAIGRVAIAAAPRGHGVSLGEAFWVWLRVAALSFGGPAGQI
                     AVMHRILVEEKRWVSENRFLNALNYCMLLPGPEAQQLATYIGWLMHRTKGGILAGGLF
                     VLPGIVAIMALSWIYALYGKVGVVSALFFGLKAAVLAVVLDAVVRIGRRALKNNLMIA
                     IAAVAFVAIFFLGVPFPLIVLGAGLIGYFGGRAGMREFEVGGGHGPAKGKAGEPVESL
                     LGEELPAHARPTVAGALRVSAVWLVLWLVPVAALLATLGTGHVFSEIAVFFSKMAMVT
                     FGGAYAVLAYVAQEAVQTYGWLGAGEMLDGLGMAETTPGPLIMVLQFVGFMGAYRDPG
                     MLHPLLAGTLGGLLATWVTFIPCFLWIFLGAPFIETLRGNKALAGALSAITAAVVGVI
                     LNLALWFAIHTIFA"
     gene            complement(1235..2059)
                     /locus_tag="VE686_01765"
     CDS             complement(1235..2059)
                     /locus_tag="VE686_01765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014331001.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase/chromate resistance protein"
                     /protein_id="HYY83210.1"
                     /translation="MSSLNSIAIDKLARLIGRPDCPALIDVCTDEDFATDPRLVPGSV
                     RRPWAQVADWAPEFSGRSAIIVCHKGQKLGQGTAAWLRHAGVPAESLEGGALAWAKAG
                     LPMVPEAKLPRRDGRGRTVWVTRARPKVDRIACPWLIRRFVDPKAVFLFVNPSDVPAV
                     AERFDAAPFDIEGPEVFWSHRGERCTFDVMVEELGLATAPLLRLATIVRGADTARLDL
                     APEAPGLLAASLGLSRMYADDLEQLEAGLTLYDAFYRWCRDATDETHNWPAKKPGA"
     gene            complement(2196..>2537)
                     /locus_tag="VE686_01770"
     CDS             complement(2196..>2537)
                     /locus_tag="VE686_01770"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY83211.1"
                     /translation="DAYLFATPENLAAISGVSKDFFDRTYYPALGRIEGRPYATLICA
                     GSDGSNAARQIARIATGWRLKEVAEPLIVCTHAQTPEAILAPKTIPRDDLQRCEDLGA
                     ALAQGLALGIF"
BASE COUNT          431 a          852 c          920 g          334 t
ORIGIN      
        1 gcgaagatgg tgtggatggc gaaccagagg gcgaggttca ggatcacccc gacgaccgcc
       61 gccgtgatgg ccgacaaggc gccggccagc gccttgttgc cgcgcagggt ctcgatgaac
      121 ggcgccccga ggaagatcca caggaagcac gggatgaagg tcacccaggt ggcaagcagg
      181 ccgccgagcg ttccggcaag gagcggatgc agcatgccgg gatcgcgata ggctcccatg
      241 aagccgacga actgcagcac catgatgagc ggccccggcg tcgtctcggc catgccgagg
      301 ccgtcgagca tctcgcccgc accgagccag ccgtaggtct gcaccgcttc ctgcgccacg
      361 taggcgagca ccgcgtaggc gccgccgaac gtgaccatgg ccattttgga gaagaagacg
      421 gcgatctcgc tgaacacgtg cccggtcccg agcgtggcga gcagcgccgc gacgggcacg
      481 agccacagca cgagccacac ggccgagacg cgcagcgcgc ccgccaccgt cgggcgcgcg
      541 tgggcgggaa gctcttcgcc aagcaggctc tcgaccggct cgccggcctt gcccttggcg
      601 ggcccgtgcc cgcccccgac ctcgaactcg cgcatgccgg cgcgtccgcc gaagtagccg
      661 atcaggccag cgccgagcac gatcaggggg aacggcacgc cgaggaagaa gatggccacg
      721 aacgccacgg cggcgattgc gatcatgagg ttgttcttca gcgcccgcct gccgatgcgc
      781 accaccgcgt cgagaacgac ggcgagcacg gcggccttga ggccgaagaa cagggccgag
      841 acgacgccga ccttgccgta cagggcatag atccagctca acgccatgat ggcgacgatg
      901 ccgggcagca cgaagagccc cccggcgagg atgccgccct tcgtgcggtg catgagccag
      961 ccgatgtagg tggcaagctg ctgcgcctcg gggccgggca gcagcatgca gtagttgagc
     1021 gcgttgagga agcggttctc cgagacccag cgcttctcct cgacgaggat gcggtgcatc
     1081 acggcgatct gcccggccgg gccgccgaag ctcagggcag cgacgcgcag ccagacccag
     1141 aaggcctcgc cgagcgacac gccatgcccg cgcggcgcgg cagcgatcgc gacgcgccca
     1201 attgcttcat ccttcacgtc atgctccggg cttctcatgc gcccggcttc ttggcgggcc
     1261 agttgtgcgt ctcgtccgtg gcgtcgcggc accagcggta gaacgcatca taaagcgtca
     1321 ggccggcctc gagttgctcg aggtcgtcgg cgtacatgcg cgacagcccg agcgaggcgg
     1381 caaggaggcc cggcgcctcg ggcgcgaggt cgagccgcgc cgtgtcggcg ccgcgcacga
     1441 tggtggcgag gcgcaggagc ggcgccgtcg cgagcccgag ctcctcgacc atgacgtcga
     1501 aggtgcagcg ctctccgcgg tggctccaga acacctcggg cccctcgatg tcgaacggtg
     1561 ccgcatcgaa gcgctcggcg acggctggca cgtcggaggg gttcacgaag aggaacacgg
     1621 ccttcgggtc gacgaagcgg cggatgagcc acgggcaggc gatgcggtcg accttgggcc
     1681 gcgcccgcgt gacccacacg gtccggccgc ggccatcgcg ccgcgggagc tttgcctccg
     1741 ggaccatggg caggccggcc ttggcccagg cgagcgcgcc gccttcgagc gattcggccg
     1801 gcacgccggc gtggcgcagc caggccgcgg tgccctgccc gagcttctgc cccttgtggc
     1861 agacgatgat ggccgagcgg ccggagaact cgggcgccca gtcggcgacc tgcgcccaag
     1921 gccgacgcac ggaacccggc acgaggcggg gatcggtggc gaagtcctcg tcggtgcaga
     1981 cgtcgatcag cgccgggcag tcgggccggc cgatgagacg cgcgagcttg tcgatggcta
     2041 tcgagttcaa tgacgacatg atgatgcgcc cgtgtgagag gatcggacgc gatgcttagg
     2101 catgtcgcct cgtggggaga tcgcaatccc catggcccga tactgacgcc gggtgcagga
     2161 ctgtcaagcg ccgacccgcc gcgagagggc cggagtcaga agatgccgag cgcgagtccc
     2221 tgcgccagcg cggcgccgag gtcctcgcag cgctgcaggt cgtctcgtgg gatggttttt
     2281 ggagcgagga tcgcctcggg cgtctgcgca tgcgtgcaga cgatgagcgg ctcggccacc
     2341 tccttcaggc gccaacccgt ggcgatgcgg gcaatctggc gcgcggcgtt cgagccgtcg
     2401 ctgccggcgc agatcagggt cgcgtaaggc cggccctcga tgcgcccgag cgccgggtag
     2461 taggtccggt cgaagaagtc cttcgaaacg cctgagatcg cagcgagatt ctcaggggtc
     2521 gcgaacaagt aggcgtc
//
LOCUS       DASQWN010000092         2030 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1207800, whole genome shotgun sequence.
ACCESSION   DASQWN010000092 DASQWN010000000
VERSION     DASQWN010000092.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2030)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2030)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2030
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1207800"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(54..1058)
                     /locus_tag="VE686_01775"
     CDS             complement(54..1058)
                     /locus_tag="VE686_01775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020177513.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anion permease"
                     /protein_id="HYY83212.1"
                     /translation="MDATLALPLLVGLIGVALLFDFLNGLHDAANSIATIVSTRVLRP
                     RYAVMWAAFFNFIAFLFFGTHVAETIGKGIVLADVVTPAVVFGALMGAIAWNVITWLG
                     GIPSSSSHALIGGLLGAATAKAGPGAVLWSGLGPTLLAIVASPFIGFLLALTLVLTVS
                     WLFVRTPPMAVDRTFRSMQFVSASLYSLGHGGNDAQKTMGIIAVLLYSQGMLGPQFHV
                     PFWVVITCQAAMALGTLFGGWRIVHTMGSKITRLSPMQGFCAETGGAITLFGATYLGI
                     PVSTTHTITGAIIGVGSARRVSAVRWNVASSIVTAWIITIPASALIAAIAYYLTRLFA
                     "
     gene            complement(1068..1712)
                     /locus_tag="VE686_01780"
     CDS             complement(1068..1712)
                     /locus_tag="VE686_01780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003531900.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF47 domain-containing protein"
                     /protein_id="HYY83213.1"
                     /translation="MLGLFRALMPKEDRFFDLFEQHSQTLVAGAEALRQLLQGGDAVP
                     QHCRTIVDREHEADDIAREVLLAVRRTFITPFDRGDIKDLIQSMDDAIDQMHQTAKTI
                     TLFQLRSFDPPMREMGDIIVEAAHLTVAAVPLLRSIGTHAGALNTYAEKITELEGRAD
                     DLHDEGLRALYAAHRDGNAMAYIVGSEVYGRLERVADRFEDVANEVNSIVIEHM"
BASE COUNT          350 a          653 c          732 g          295 t
ORIGIN      
        1 aacccccgcc gagtcccgcg cgctcctctc cctgcacccg gcctgatgcg cggtcacgcg
       61 aacaggcgcg tgaggtagta ggcgatcgcc gcgatgaggg cggatgcggg gatggtgatg
      121 atccaggccg tgacgatgct gctggccacg ttccagcgca cggcggacac gcgccgggcg
      181 gagccgacgc cgataatcgc gcccgtgatg gtgtgcgtgg tcgacacggg aatgccgagg
      241 taggtcgccc cgaagagcgt gatggcgcca cccgtctcgg cgcagaagcc ctgcatcggc
      301 gacaggcgcg tgatcttcga gcccatggtg tgcacgatgc gccaccctcc gaacagggtg
      361 ccgagcgcca tggcggcctg gcaggtgatc acgacccaaa aggggacgtg gaactgcggc
      421 ccgagcatgc cctgcgagta gagcaggacg gcgatgatgc ccatggtctt ctgcgcgtcg
      481 ttgccgccgt ggccgagcga gtagagcgaa gcggagacga actgcatcga tcggaatgtc
      541 cggtcgactg ccatcggagg cgtgcgcacg aacagccagg agaccgtcag caccagcgtg
      601 agcgcgagca ggaagccgat gaacggcgac gccacgatgg cgaggagcgt cggtccgagc
      661 ccgctccaca ggacggcccc agggccggcc ttggcggtgg cagcgccgag gagccccccg
      721 atcagcgcat gggacgagct cgacgggatg ccgccgagcc aggtgatcac gttccaggcg
      781 atcgctccca tgagcgcgcc gaagaccacc gcgggggtca ccacgtcggc gagcacgatg
      841 cccttgccga tggtctcggc gacgtgcgtt ccgaagaaca ggaaggcgat gaaattgaag
      901 aacgccgccc acatgacggc gtaacggggg cggagcacgc gcgtcgacac gatggtggcg
      961 atcgagttcg cggcgtcgtg caggccgttg aggaagtcga acagcagcgc gacgccgatc
     1021 aggccgacga gcaggggcag cgcgagtgtg gcatccatgg cccgcgccta catgtgctcg
     1081 atgacgatgc tgttgacctc gttggccacg tcttcgaagc ggtcggccac gcgctcgagc
     1141 cggccgtaga cctcgctgcc cacgatgtag gccatggcgt tgccgtcgcg gtgggcggcg
     1201 tatagcgcgc gcaggccctc gtcgtgcagg tcgtcggcac ggccctcgag ctcggtgatc
     1261 ttctcggcgt aggtgttgag cgcgccggcg tgcgtgccga tcgaccgcaa gagcggcacc
     1321 gccgcgacgg tcaggtgcgc ggcttcgacg atgatgtcgc ccatctcgcg catgggaggg
     1381 tcgaacgagc gcagctggaa cagcgtgatg gtcttggccg tctggtgcat ctggtcgatg
     1441 gcgtcgtcca tcgactggat caggtccttg atgtcgccgc ggtcgaacgg agtgatgaag
     1501 gtgcgccgca ccgcgagcag gacctcgcgc gcgatgtcgt ccgcctcgtg ctcccgatcg
     1561 acgatggtac ggcagtgctg cggaacggcg tcgccgccct gaagcagctg gcgcagagcc
     1621 tcggccccgg cgacgagggt ttgagagtgc tgctcgaaga gatcgaagaa gcggtcttcc
     1681 ttgggcatca gagcccgaaa caggccgagc atcgcgcgaa agcccccgtt cttgcgctcg
     1741 cggcataacc acggcgcaaa ccatccgttc ccggcgagca caagcgtcat ccacgcccgc
     1801 ttggcaaggc ccagctggcc ggccagccgt gcaggaaccg gctttgtcag gcggcgttgg
     1861 ccatgcgagc cgggagttca acggagacga gccatgccga cgtccatgcg cgcgccctgg
     1921 accatcacgg cgttcttcga cgaacggcgc gcagccgacc gtgccgtcga cagacttctc
     1981 ggagccgggt tgtcccgcgc agctgtccgg ctcgtgccgg gcggcgagcg
//
LOCUS       DASQWN010000093         5367 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1306993, whole genome shotgun sequence.
ACCESSION   DASQWN010000093 DASQWN010000000
VERSION     DASQWN010000093.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 5367)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5367)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5367
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1306993"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..246
                     /locus_tag="VE686_01785"
     CDS             <1..246
                     /locus_tag="VE686_01785"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY83214.1"
                     /translation="YVLCDRLVAGTLAHSCVHGEGPHRIKIVVVKKDNPKGIIAALVA
                     PLGPQIPRATLRLGAAGTVLPPRPKRRRARASATGPG"
     gene            complement(280..1209)
                     /locus_tag="VE686_01790"
     CDS             complement(280..1209)
                     /locus_tag="VE686_01790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018262825.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histone deacetylase family protein"
                     /protein_id="HYY83215.1"
                     /translation="MTSLFLCHAAALDHRTPAGHPERPDRIRAIEAALEDERFSGLVR
                     EQAPMAGDDLLTLAHPEAYVRALRDAAPREGLVSLDADTVMSPGTMEAVLRGVGAAAR
                     AVDEVMTKKVANAFSAMRPPGHHAERARPMGFCLFNNAAIAARHAQKAHGAERVAILD
                     WDVHHGNGTQDIFWSDASVLYCSTHQMPLYPGTGALSERGDHDTIVNAPLSPGSDGDL
                     FRDALESRILPRMEAFKPDLIVISAGFDAHWRDPLANLSLKEADFAWATAKVLDIADG
                     SCGGRVVSLLEGGYDLEGLSKSVAAHVEVLMGR"
     gene            1425..2012
                     /locus_tag="VE686_01795"
     CDS             1425..2012
                     /locus_tag="VE686_01795"
                     /EC_number="2.3.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012319705.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016746 - acyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0071972 - peptidoglycan L,D-transpeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0018104 - peptidoglycan-protein
                     cross-linking [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="L,D-transpeptidase"
                     /protein_id="HYY83216.1"
                     /translation="MRPFLIPLACCCLAAMSACSFKGTPDPSLSAKDAQWMALVPPAE
                     EDPAFGRYEVQYATAEAPGTIIIDTKTRLLHFVLPGGKAIRYGVTVGDEAFGWTGTAR
                     VARKAEWPAWNPPAEMVKRWPHVHAMEGGPANPLGARALYLFEGNRDTLYRIHGTNEP
                     EKIGRAASSGCIRMRNIDVVDLYDRVGSDAKVIVR"
     gene            complement(2068..3450)
                     /locus_tag="VE686_01800"
     CDS             complement(2068..3450)
                     /locus_tag="VE686_01800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003599476.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate aminotransferase family protein"
                     /protein_id="HYY83217.1"
                     /translation="MLSNLAVRDVETLIHPYTQLASFRETGPLIIERGEGIYVFDTEG
                     KPYIEGMAGLWCTSLGYSNGELVEAAREQMAKMPFTHLFSGRSHDPAIELAEKLKEIA
                     PSPMSKVFFTSSGSEANDSQVKLVWYMNNALGRPAKKKIISRIKGYHGVTVASASLTG
                     LPANHTDFDLPIANILHTANPHHYRNAEAGESEEDFSARLARELEDLILREGPDTVAA
                     FIAEPVMGAGGAVIPPAGYFPAVQAVLEKYDVFFIADEVICGFGRLGTWFGSQKLGIR
                     PDTVSFAKAVTSAYLPLGGVMIPERMYEAMLDESRKIGTFGHGFTYSGHPVSCAVAVK
                     TIEIYERDGIIGKVAAKAPLFERRFAALADHPLVGEARGLGLIGGLEIVADKATKRQF
                     DPKKGVATKCMSFAQAEGLIVRSLMGDRIAVCPPLIVTEEEIDEIFDRLARALDRTAE
                     WVRHEGLQAV"
     gene            3619..4164
                     /locus_tag="VE686_01805"
     CDS             3619..4164
                     /locus_tag="VE686_01805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012333590.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY83218.1"
                     /translation="MLDPVDYVSEPAAGRSCGTCTLCCKVFDVPALEKPAGNWCKHCA
                     PGRGCGIHETRPQHCRSFHCMWMTQAWLGPEWKPDRAKMVLTIDPGTNFMYVQVDPGH
                     PAAWKREPYYGHLKSMAEAWLRLGRHVIVFHNKSATVVLPNSDVPVGVFAPGDRLVAR
                     QRATPTGPRIEVEKVSAAAPA"
     gene            complement(4232..>5367)
                     /gene="carA"
                     /locus_tag="VE686_01810"
     CDS             complement(4232..>5367)
                     /gene="carA"
                     /locus_tag="VE686_01810"
                     /EC_number="6.3.5.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009764622.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005951 - carbamoyl-phosphate synthase
                     complex [Evidence IEA];
                     GO_function: GO:0004088 - carbamoyl-phosphate synthase
                     (glutamine-hydrolyzing) activity [Evidence IEA];
                     GO_process: GO:0009220 - pyrimidine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="glutamine-hydrolyzing carbamoyl-phosphate
                     synthase small subunit"
                     /protein_id="HYY83219.1"
                     /translation="LQDGTVLEGFGIGAVGEATGEVCFNTAITGYQEILTDPSYAGQI
                     ITFTFPHIGNVGTNEEDVESVNAASSSGVRGLVLAAAITDPSNWRSSRHLDAWLKARG
                     IAGITGVDTRALTALIRDNGMPNAVIAHDPSGRFDLDALKTRAAGLHSMAGLDLVPMV
                     MSHERFGWDETPWELGKGYGQQGSSKHHVVAIDYGVKRNILRLLAQAGCKVTVVPANA
                     SAEEILALEPDGVFLSNGPGDPAATGEYAVPVIREILDRKVPTFGICLAHQLLGLSLG
                     ARTLKMHQGHHGANHPVKDKTTGKVEITSMNHGFAVDPDTLPATAVETHVSLFDGSNC
                     GIALTDRPAFSVQYHPEASPGPRDSHYLFDRFVALMDDAKLRV"
BASE COUNT          858 a         1780 c         1851 g          878 t
ORIGIN      
        1 tacgtcctct gcgaccgcct cgtggccggg acgctcgcgc attcctgcgt gcatggcgag
       61 ggaccccacc ggatcaagat cgtggtcgtg aagaaggaca atccgaaggg catcatcgcg
      121 gcgcttgtgg caccgctcgg cccgcagatt ccccgggcga ccctgcgcct gggtgcggcc
      181 ggaaccgtgc tgccgccgcg gcccaagcga aggcgcgctc gagcgtccgc caccggccca
      241 ggctagcgca cgaaggagat tgatcggccg cgcagccgat caccgtccca tcagcacctc
      301 gacgtgggca gccacggact tcgacagccc ctcgaggtcg tagccgccct cgagcagcga
      361 caccacccgt ccgccgcagc tgccatcggc gatgtcgagg accttcgcgg tggcccaggc
      421 gaaatccgcc tccttgaggc tgaggttggc aaggggatcg cgccagtgcg cgtcgaagcc
      481 ggccgagatc acaataaggt cgggcttgaa cgcctccatg cgcggcaaga tccggctctc
      541 gagggcgtcg cgaaagaggt cgccgtcgga gccgggcgag agcggcgcgt tgacgatggt
      601 gtcgtggtcg ccgcgctcgg agagtgcgcc tgtgccgggg tagaggggca tctggtgcgt
      661 cgaacagtac agcacgctcg cgtcgctcca gaagatgtcc tgcgtgccgt tgccgtgatg
      721 cacgtcccaa tcgaggatcg cgacgcgctc ggccccatgc gctttctgag catggcgcgc
      781 cgcgatggcc gcattgttga acaagcagaa ccccatcggt cgcgcccgct ccgcgtgatg
      841 gcccggggga cgcatcgccg agaaggcgtt cgccaccttc ttcgtcatga cctcgtccac
      901 cgcgcgcgcc gcggctccga cgccgcgcag caccgcctcc atggtccccg gtgacatcac
      961 cgtatcggcg tcgagcgaca cgaggccctc gcgcggggcc gcgtcccgca gcgcacgaac
     1021 gtacgcctcg ggatgggcga gggtgaggag gtcgtccccc gccatgggcg cctgctcgcg
     1081 caccagccca gagaagcgtt cgtcctcgag ggcggcctcg atggcccgga tgcgatcggg
     1141 ccgctcgggg tggccggccg gagtccggtg atcgagggcg gccgcgtgac acaggaacag
     1201 cgacgtcatc gaaagctctt gggtggaagc tcttggccag aggatcgccc actctcgcag
     1261 ccaggctccc tatagtccat gtgccttggt cgccacaccc gagacggaac ttacgttccg
     1321 gcattgcggc gcatcatccg ggtccttaga ccgaaaacag acccgccaga ggtcgattca
     1381 cctacgagcg ccgtttcagg tgccaacccg cggggccttc gtcgatgcgg ccgtttctga
     1441 tcccactcgc ctgctgctgc ctcgcagcca tgtcggcgtg ctcgttcaag ggcacgcccg
     1501 acccgtcttt gtcggccaag gacgcgcagt ggatggctct cgtgccgccc gccgaggagg
     1561 atccggcgtt cgggcgctac gaggtccagt acgcgaccgc cgaggccccc ggcaccatca
     1621 tcatcgatac caagacccgc ctccttcatt tcgtgctgcc tggtgggaag gcgatccggt
     1681 acggggtcac cgtcggcgac gaggccttcg gctggacggg tacggcacgg gtggcccgaa
     1741 aggcggagtg gccggcctgg aacccgcccg cagagatggt gaagcgctgg ccgcacgtcc
     1801 acgcgatgga gggcggaccc gccaatccgc tcggtgcgcg ggcgctctac ctgttcgagg
     1861 gcaaccgcga cacgctctac cgcatccacg gcaccaacga gccggaaaag atcggccgcg
     1921 ccgcctcgtc aggctgcatc cgcatgcgca acatcgacgt cgtcgacctc tacgaccgcg
     1981 tcggctccga cgcgaaggtc atcgtgcggt aggcatgttc aacccctcgc catcgcgggg
     2041 gaggggggcg cgcgcgcggg tgcggcgtca gaccgcctgc agcccttcgt ggcgtaccca
     2101 ctccgccgtg cggtcgagcg cgcgggcgag gcggtcgaag atctcgtcga tctcctcctc
     2161 cgtcacaatg agcggagggc acacggcgat gcggtcgccc atgagcgagc gcacgatcag
     2221 cccctccgcc tgggcgaagc tcatgcactt cgtcgcgacg cccttcttcg ggtcgaactg
     2281 gcgcttggtc gccttgtcgg ccacgatctc gagaccgccg atcaggccaa ggccccttgc
     2341 ttcgccgacc aggggatggt cggcgagcgc tgcgaatcgg cgctcgaaca ggggcgcctt
     2401 ggcggccacc tttccgatga tgccatcgcg ctcgtagatc tcgatcgtct tcaccgcgac
     2461 ggcgcaggag accgggtgcc cggaataggt gaagccgtgc ccgaaggtgc cgatcttgcg
     2521 gctctcgtcg agcatcgcct cgtacatccg ctccgggatc atgaccccgc ccaagggcag
     2581 gtaggccgac gtgaccgcct tggcgaagga gacggtgtcg gggcgaatcc cgagcttctg
     2641 cgaaccgaac caggtcccga ggcgcccgaa gccgcagatc acctcgtcag cgatgaagaa
     2701 gacatcgtac ttttctagca cggcctggac ggccgggaag tagccggccg gtgggatcac
     2761 ggccccgccg gcgcccatga ccggttcggc gatgaaggcc gccacggtgt cgggcccttc
     2821 gcgcaggatc aggtcctcga gttcccgggc gagccttgcg gaaaagtcct cctcgctctc
     2881 gccggcctcg gcgttgcggt aatgatgggg gttggccgtg tgcaggatgt tggcgatcgg
     2941 caggtcgaag tcggtgtggt tggccggcag accggtcagc gacgccgagg cgacggtgac
     3001 gccgtggtag cctttgatgc gggagatgat cttcttcttt gcagggcgac cgagcgcatt
     3061 gttcatgtac cagacgagct tcacctggct gtcgttggcc tcggagcccg acgaggtgaa
     3121 gaacaccttc gacatggggg agggggcaat ctccttcagc ttctcagcaa gttcgatcgc
     3181 tggatcgtgg ctgcggccgg agaacaggtg cgtgaacggc attttcgcca tctgctcccg
     3241 ggccgcctcg acaagctcgc cgttggagta gccgagcgac gtgcaccaca ggcccgccat
     3301 gccctcgatg tagggtttgc cttccgtgtc gaagacgtag atgccctcgc cgcgctcgat
     3361 gatgagcggt ccggtctcgc ggaagctcgc aagctgggta taggggtgga tcagggtttc
     3421 gacatcgcgg acggcgagat tcgacagcac gggcacgctc cagcttgcag attggggcga
     3481 ccgtactcct cacgcgccgc cgcacaagca cgcccgagca gggctgccct ccggcgagcg
     3541 cgggcgcgtg tcccgtcgcc gcaggtagtt gcgcgacggg ggggcactcg tcatggtgca
     3601 ccggcctagg acgcctgcat gctcgatccc gtcgactacg tctcggaacc cgccgccggg
     3661 cgttcctgcg gaacctgcac cctttgctgc aaggtcttcg acgtgcccgc gctcgagaaa
     3721 ccggcgggaa actggtgcaa gcactgcgcg ccgggcaggg gatgcggcat ccacgagacg
     3781 cggccgcagc actgccgctc gtttcactgc atgtggatga cgcaagcctg gctcgggcct
     3841 gagtggaagc ccgatcgcgc gaagatggtg ctgaccatcg atccgggcac gaactttatg
     3901 tacgtccagg tcgatcccgg ccatccggca gcgtggaagc gcgagcccta ctacggccac
     3961 ctcaagtcca tggcggaggc ttggctgcgg ctcggccggc acgtgatcgt gtttcacaat
     4021 aagagcgcca ccgtggtgct gcccaacagc gatgttcccg tcggggtctt cgcgcccggc
     4081 gaccgcctcg tcgcccgtca gcgcgccaca ccgacgggac cgcgtattga ggtcgagaaa
     4141 gtcagcgccg ccgctccggc gtgagtgccc gtggtatccc gctcgcggga gaggtcgacg
     4201 ccgcgaagcg gaccgggcga gggagcgtgc gctacaccct cagcttcgcg tcgtccatga
     4261 gcgccacgaa cctgtcgaac aggtagtggc tgtcgcgcgg cccgggggag gcttcggggt
     4321 ggtactggac cgagaaggcg gggcgatctg tcagggcaat gccgcagttc gagccgtcga
     4381 acagggatac gtgcgtctcc acggccgtgg ctggaagggt gtcggggtcg accgcgaagc
     4441 cgtgattcat cgaggtgatc tcgaccttgc cggtcgtctt gtccttaacg gggtggttcg
     4501 cgccgtggtg gccctggtgc atcttcaggg tacgggcccc gagcgacagc ccgagcagct
     4561 ggtgggcgag gcagatgccg aaggtcggga ccttgcggtc gaggatctcg cggatgaccg
     4621 gcaccgcgta ctcgcccgtc gcagcgggat cgccgggccc gttcgacagg aacacgccgt
     4681 cgggctcaag cgccaggatc tcctctgcgc tcgcgttcgc gggcacgacc gtgaccttgc
     4741 agccggcctg ggccaggaga cgcaggatgt tgcgcttgac gccgtagtcg atggcgacca
     4801 cgtggtgctt ggacgagcct tgctggccgt agcccttgcc cagctcccac ggggtctcgt
     4861 cccatccgaa gcgctcgtgg ctcatgacca tagggacgag gtcgagccca gccatggaat
     4921 gcaggcccgc ggctcgggtc ttcagcgcgt cgaggtcgaa ccgaccgctc ggatcgtgcg
     4981 cgatcaccgc attcggcatg ccgttgtcgc ggatcagcgc ggtgagggcg cgggtatcga
     5041 cgcccgtaat gccggcgatg ccgcgcgcct tcagccaggc atcgagatgg cgtgacgagc
     5101 gccaattcga cggatcggtg atcgccgccg ccaggacgag gccgcggacg ccggaggacg
     5161 aggcggcatt gacgctctcg acgtcctctt cgttggtgcc gacattgccg atatgcggga
     5221 aggtgaaggt gatgatctgc ccggcatagg acggatccgt gaggatctcc tggtagccgg
     5281 tgatcgcggt gttgaagcag acttccccgg tcgcctcgcc gacggccccg atcccgaagc
     5341 cttcgagcac ggttccgtcc tgaagca
//
LOCUS       DASQWN010000094         3531 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_16936, whole genome shotgun sequence.
ACCESSION   DASQWN010000094 DASQWN010000000
VERSION     DASQWN010000094.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 3531)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3531)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3531
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_16936"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..853
                     /locus_tag="VE686_01815"
     CDS             <1..853
                     /locus_tag="VE686_01815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007607870.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HYY83220.1"
                     /translation="SGCGKSVTSLAIMGLLPTETAQVSGAVRFEGRDLLREPDRVMRD
                     LRGDRLAMIFQEPMTSLNPSYTVGDQIVEAVVRHRGMPKREAARHAVEMLRRVRIPSP
                     ETRFHDYPHKLSGGMRQRVMIAMALACDPRLLMADEPTTALDVTIQAQILDLMRGLRE
                     ESGAAIVLITHDLGVVAEVCDEVVVMYAGQVVERAPVGELFRFPQHPYTVGLLGALPR
                     LEQRRARLAAIEGTVPNMTAPPKGCRFQARCPFRIEKCAELPPLAPVEAGHLARCWRA
                     PLQRLVA"
     gene            850..1917
                     /locus_tag="VE686_01820"
     CDS             850..1917
                     /locus_tag="VE686_01820"
                     /EC_number="7.4.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015687616.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0015833 - peptide transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dipeptide ABC transporter ATP-binding protein"
                     /protein_id="HYY83221.1"
                     /translation="MSGPVLEVEDLVKHFDVKRSWLGRPLTTVKAVDGVSFTLAPGET
                     LALVGESGCGKSTVGRLVMRLIDATAGRIVIDGTDVTTLGERDFRPFRRTVQLIFQDP
                     YASLNPRMTVGEILAEPLMLHDIVPARQRRGRVEELLAMVGLRPQLAARYPHEFSGGQ
                     RQRIVVARALAVDPKVIVCDEAVSALDVSIRAQILNLLKELQDRLGLAYVFISHDLGV
                     VKHISDRIAVMYLGRIVETGTADQVFGDPRHPYTRALLSAIPVASPESRRVRKILQGD
                     VPSPIHPPPGCHLHTRCPYVGDICRVERPALADAGDGHPAACHFWPTLPPASDVLPAE
                     GPIDPRLEKLFGAFLAAPSAS"
     gene            1971..3488
                     /locus_tag="VE686_01825"
     CDS             1971..3488
                     /locus_tag="VE686_01825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007593861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HYY83222.1"
                     /translation="MANRLMSGIVAAAALIASAGLANAQTTLRIGLAEDPDVLDPSLA
                     RTYVGRIVFASLCDKLFDIDEKLGLVPQLALGHETSGDGKSVIIKLRPNVKFHDGEPM
                     DAEAVKFSLERHMTMQGSFRRPELGAVDKVEVVDPTTVRLVLKTPFSPLLAQLTDRSG
                     MMVSPKAAREAGDKFGQKPVCAGPYKFVERVQQDRIVVEKFADYWNKDNVHIDRIVYV
                     PIQDSTVRLANLKSGQLDVIERALATDLKEIRAAGNLRVATTTELGYQGITINIANGD
                     AAKNPLGQDARVRQAFNAAIDREALNQVVFNGEFTPGNQWVSPKNPWYQEKYPVPQRD
                     IAKAKKLIQEAGVKTPISVDFMVPNNPETRQVAEVLQSMTAEAGFDLKIRVTEFATSL
                     NEAEAGRYQAYMLAWSGRPDPDGNVYVFQKSNAPQNYGRYSDPQVDAALDEARTKNDN
                     KERKSLYEKVAAKVLSEGPIVYIYHRLVIIAHTAKLEGYKQMPDGLVRLVGVKLK"
BASE COUNT          570 a         1274 c         1157 g          530 t
ORIGIN      
        1 gtccggctgc ggcaagagcg tcacctccct tgccatcatg gggctcctgc cgacggaaac
       61 ggcgcaggtt tcgggcgcgg tccgcttcga gggccgcgat ctcctgcgcg agccggaccg
      121 ggtcatgcgc gacctgcgcg gagaccggct cgccatgatc ttccaggagc cgatgacctc
      181 gctcaaccct tcgtacacgg tcggcgacca gatcgtggag gcggtcgtgc gccaccgcgg
      241 catgccgaag cgcgaggcgg cgcggcacgc ggtcgagatg ctccggcgcg tgcgcatccc
      301 ctcccccgag acgcgcttcc acgattaccc gcacaagctc tcgggcggca tgcgccagcg
      361 cgtcatgatc gccatggcgc tcgcctgcga cccgcgcctg ctcatggccg acgagccgac
      421 gaccgccctc gacgtcacca tccaggccca gatcctcgac ctcatgcgcg gcctgcgcga
      481 ggagagcggc gccgccatcg tgctgatcac gcacgacctc ggtgtcgtcg ccgaagtctg
      541 cgacgaggtc gtggtgatgt acgccggcca ggtggttgag cgcgcgcccg tgggcgagct
      601 gttccgcttt ccccagcacc cctacacggt aggactcctg ggcgccctgc cgcggctcga
      661 gcagcggcgc gcccggctcg cggccatcga gggcaccgtc cccaacatga cggcgccgcc
      721 gaagggctgt cgcttccagg cccgctgccc cttccgcatc gagaaatgcg ccgagctgcc
      781 gccgctcgcg cccgtggagg ccggccacct cgcccgctgc tggcgcgcgc ccctgcagag
      841 gctcgtggca tgagcgggcc ggtcctcgag gtcgaagacc tcgtcaagca cttcgacgtc
      901 aagcggtcct ggctcggccg cccgctgacc accgtcaagg ccgtcgacgg cgtctcgttc
      961 acgcttgcgc ccggcgagac gctggcgctc gtcggcgagt ccggctgcgg caagtccacg
     1021 gtcgggcgcc tcgtcatgcg cctgatcgat gcgacggcgg ggcgcatcgt tatcgacggc
     1081 accgacgtga cgaccctggg ggagcgcgac ttccgcccgt tccggcgcac ggtgcagctg
     1141 atcttccagg acccgtatgc gtccctgaac ccgcgcatga cggtcggcga aatcctagca
     1201 gagcccttga tgctgcacga catcgtgccg gcgcggcaac gacgcgggcg cgtcgaggag
     1261 ctcctcgcca tggtgggcct gcgcccgcag ctcgccgcgc gctatccgca cgaattctcg
     1321 ggcgggcagc gccagcgcat cgtggtcgcc cgggcgctcg cggtcgatcc gaaggtcatc
     1381 gtctgcgacg aggcggtctc ggcgctcgac gtgtcgatcc gggcgcagat cctgaacctc
     1441 ctcaaggagc tgcaggaccg tctcggcctc gcctatgtgt tcatctcgca cgatctcggg
     1501 gtcgtgaagc acatctcgga ccgcatcgcc gtcatgtacc tcggccgcat cgtcgagacc
     1561 gggacggccg atcaggtctt cggcgatccg cgccacccct acacgcgggc gcttctgtcg
     1621 gcgatcccgg tcgcctcgcc ggagagccgg cgcgtgcgca agatcctcca gggcgacgtt
     1681 ccgagcccga tccacccgcc gcccgggtgc cacctgcaca cgcgctgccc gtatgtcggc
     1741 gacatctgcc gggtcgagcg cccggccctc gccgacgcgg gcgacggcca tcccgccgcg
     1801 tgccatttct ggccgaccct gccgcctgcc tccgacgtac tgccggccga ggggccgatc
     1861 gatccgcggc tcgaaaagct gttcggcgct ttcctcgcgg ccccgtccgc ctcatgattt
     1921 gctacaccag gagaacggcc cggagcggcc gcaagtgcag ggagacagga atggccaatc
     1981 gcttgatgtc cgggatcgtc gccgcggcgg cgctcatcgc ctctgccgga ttggcgaatg
     2041 cgcagacgac cctgcggatc ggcctcgccg aggatccgga cgtgctcgac ccctccctcg
     2101 cgcgcacgta cgtcggccgc atcgtcttcg cgtcgctttg cgacaagctc ttcgacatcg
     2161 acgagaagct cggcctcgtg ccgcagctcg cgctcggaca tgagacgtcg ggcgatggca
     2221 agtcggtcat catcaagctg cgcccgaacg tgaaattcca cgacggcgag cccatggacg
     2281 ccgaggcggt caagttctcg ctcgagcgcc atatgactat gcagggctcg ttccgccggc
     2341 cggagctcgg cgccgtcgac aaggtcgagg tggtcgatcc gacgacggtg cgcctcgtcc
     2401 tgaagacgcc gttctcgccc ctcctcgccc agctgacgga ccgctcaggg atgatggtct
     2461 cgcccaaggc ggcccgggag gcgggcgaca agttcggcca gaagcctgtc tgcgccggcc
     2521 cgtacaagtt cgtcgagcgc gtgcagcagg accgcatcgt cgtcgagaag ttcgccgact
     2581 actggaacaa ggacaacgtc cacatcgatc gtatcgtcta cgtgccgatc caggactcga
     2641 cggtgcggct cgccaacctg aagtcggggc agctcgacgt gatcgagcgc gcgctcgcga
     2701 cggacctcaa ggagatccgg gccgccggga accttcgggt cgcgacgacg accgagctcg
     2761 gctaccaggg catcaccatc aacatcgcga acggcgacgc ggccaagaac ccgctcgggc
     2821 aggacgcccg ggtgcgtcag gccttcaacg cggccatcga ccgtgaggcc ctgaaccagg
     2881 tcgtcttcaa cggcgagttc acgccgggga accagtgggt cagcccgaag aacccctggt
     2941 accaggagaa gtacccggtt ccgcagcgcg acatcgccaa ggccaagaag ctgatccagg
     3001 aagcgggcgt gaagacgccg atcagcgtcg acttcatggt gccgaacaac ccggagacgc
     3061 ggcaggtcgc cgaggttctg cagtcgatga cggcggaagc gggcttcgac ctcaagatcc
     3121 gggtcaccga gtttgcgacc tcgctcaacg aggccgaagc cggccgctac caggcctaca
     3181 tgctcgcctg gtcggggcgt cccgacccgg atggcaacgt ctacgtcttc cagaagtcga
     3241 atgcgccgca gaactacggg cgctattccg acccgcaggt cgacgccgcc ctcgacgagg
     3301 cgcgcaccaa gaacgacaac aaggagcgca agagcctcta cgagaaggtg gccgccaagg
     3361 tgctgagcga gggcccgatc gtctacatct accaccgcct cgtcatcatc gcccacacgg
     3421 cgaagctcga gggctacaag cagatgcccg acggcctcgt gcgccttgtc ggcgtcaagc
     3481 tgaagtgacc ctctccggcg cacgtcatcc cggacggcgt gcagcgccga t
//
LOCUS       DASQWN010000095         3419 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1008880, whole genome shotgun sequence.
ACCESSION   DASQWN010000095 DASQWN010000000
VERSION     DASQWN010000095.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 3419)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3419)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3419
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1008880"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            144..1151
                     /locus_tag="VE686_01830"
     CDS             144..1151
                     /locus_tag="VE686_01830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019400059.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="fumarylacetoacetate hydrolase family protein"
                     /protein_id="HYY83223.1"
                     /translation="MKLASLKHGRDGRLVVVSKDLTRATDAFIVVPTLQAALDDWARV
                     APRLALLAEQLEVGSVPSFRFHEHECASPLPRAYQWADGSAYVNHVELVRRARGAEMP
                     ASFWTDPLMYQGGSDSFLGPREPIAMMTEAWGIDFEGEVAVILDDVPAGATREEAAAA
                     IRLVVLVNDVSLRNLIPGELAKGFGFFQAKPSSALSPVAVTPDELGEAWDGAKLTLPL
                     HCTLNGQPFGRPNAGVDMTFDFPTLIAHAAKTRPLSAGTIVGSGTVSNKDADGSPGKP
                     IAEGGLGYACIAEQRTVETIRTGHPTTPFLNFGDTLRLEMKDDRGHSIFGAIEQEVVR
                     A"
     gene            complement(1212..2495)
                     /locus_tag="VE686_01835"
     CDS             complement(1212..2495)
                     /locus_tag="VE686_01835"
                     /EC_number="2.5.1.49"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009492695.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016765 - transferase activity,
                     transferring alkyl or aryl (other than methyl) groups
                     [Evidence IEA];
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0006520 - amino acid metabolic process
                     [Evidence IEA];
                     GO_process: GO:0019346 - transsulfuration [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="O-acetylhomoserine
                     aminocarboxypropyltransferase"
                     /protein_id="HYY83224.1"
                     /translation="MTDRQPGFATLAIHAGATPDPATGARATPIYQTTSFVFDDVDHA
                     ASLFGLQAFGNIYSRIGNPTCAVLEERVAALEGGTAALAVASGHAAEFLTMHALMQPG
                     DEFIAARKLYGGSINQFNHSYKNFGWNVVWADSDEPATFEAAVTERTKAIFVESIANP
                     GGVVVDLAAIADIAKRHRIPFIVDNTMATPYLIRPFEHGADIIVHSATKFLGGHGNSI
                     GGLIVDGGSFNWMGDERYPMLSKPRPEYGGMVLGETFGNFAFAIATRVLGLRDMGPAL
                     SPFNAFMILTGIETLPLRMQRHCESTLTVAQHLSQHQGVAWVGYPGLPSDRYHELARR
                     YSPKGAGAVFTFGLKGGYDAGVRLVSNLKLFSHLANIGDTRSLVIHPASTTHRQLTDA
                     QRVQAGAGPEVVRLSIGLEDPADLIADLDQALSAA"
     gene            complement(2592..3074)
                     /locus_tag="VE686_01840"
     CDS             complement(2592..3074)
                     /locus_tag="VE686_01840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012112481.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HYY83225.1"
                     /translation="MRSAPKSTTPVDTRIGARIRMRRMLVGISQTELGEKSGVTFQQI
                     QKYEKGTNRVSVSRLHQIAQTLGVPVEFFYEGLSEGGGATIDNVPDVSSLLATADALD
                     MLKAFATLENRAVRRRLVALTEQLVAAQSGADVDIEGEDEGEPAPAAGRESRPKGRRS
                     "
     gene            complement(3226..>3419)
                     /locus_tag="VE686_01845"
     CDS             complement(3226..>3419)
                     /locus_tag="VE686_01845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020091399.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA];
                     GO_function: GO:0016853 - isomerase activity [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="S-adenosylmethionine:tRNA
                     ribosyltransferase-isomerase"
                     /protein_id="HYY83226.1"
                     /translation="PGHRIRAVDALLTNFHLPRSTLFMLVAAFSGLETMRTAYAHAVD
                     AGYRFYSYGDASLLFPAAD"
BASE COUNT          517 a         1167 c         1192 g          543 t
ORIGIN      
        1 ggcagcggcg gcgaggcccg cgccggcgag aaagctgcgc cgcttcatgg tggcgggcgc
       61 ggttgcggtg gcggtcatcg gcgtctcccc cggttttctg atcgtgctac taatgccccg
      121 tccagggggg tccacgcaat ctcatgaagc tcgcaagcct gaagcacggc cgcgacggcc
      181 gtctcgtcgt ggtgtcgaag gacctcacgc gcgccaccga cgccttcatc gtggtgccga
      241 ccctgcaggc ggccctcgac gactgggccc gcgtcgcgcc gcgcctcgcg cttttggccg
      301 agcagctcga ggtcggcagc gtgccctcgt tccgcttcca cgagcacgaa tgcgcctccc
      361 ccctgccccg cgcctatcag tgggccgacg gctcggccta cgtgaaccac gtcgagctcg
      421 tgcgcagagc gcgcggggcc gagatgccgg cctcgttctg gaccgacccg ctcatgtatc
      481 agggcggctc ggattcgttc ctcggcccgc gcgagcccat cgcgatgatg accgaggcct
      541 ggggcatcga cttcgagggc gaggtcgcgg tgatcctcga cgatgtgccc gcgggcgcga
      601 cgcgcgaaga ggctgccgcc gcgatccgcc tcgtggtcct cgtcaacgac gtgtctttgc
      661 gcaacctcat cccgggcgag ctcgccaagg gcttcggctt cttccaggcg aaaccttcgt
      721 cggccctgtc gcccgtcgcc gtcacccccg acgagctcgg ggaggcgtgg gacggcgcca
      781 agctgacgct gccgctccac tgcaccctca acggccagcc gttcgggcgt cccaacgccg
      841 gcgtcgacat gaccttcgac ttcccgaccc tcatcgccca cgcggcgaag acgcgacccc
      901 tgagcgccgg caccatcgtc ggctcgggca ccgtgtccaa caaggacgcc gacggctccc
      961 ccggcaagcc gatcgccgag ggcggcctcg gctacgcctg catcgccgag cagcgcaccg
     1021 tcgagaccat ccgcaccggc caccccacga cgccgttcct caacttcggc gacaccctgc
     1081 gcctcgagat gaaggacgac cgcggccact cgatcttcgg ggcgatcgag caggaggtgg
     1141 tgcgggctta agagcggcga gggtcagggg acctcgcctg tgccggcggg tggtgcagcg
     1201 cgcgctgcat gtcaggcagc cgacagcgcc tgatcgaggt cggcgatgag gtcggcggga
     1261 tcctcgagac cgatcgagag gcgcaccacc tcggggccgg ctccggcctg gacgcgctga
     1321 gcgtccgtca gctggcggtg cgtcgtcgag gccgggtgga tgaccagcga gcgggtgtcg
     1381 ccgatgttcg ccaggtggct gaagagcttg aggttcgaca ccagccgcac gcccgcgtcg
     1441 tagccgccct tgaggccgaa ggtgaacacc gcccccgcgc ctttgggcga atatcgccgg
     1501 gcaagctcat ggtatcggtc gctcggcagg cccgggtagc cgacccaggc gacgccctga
     1561 tgctggctga ggtgctgcgc gacggtcagc gtcgactcgc aatggcgctg catgcgcagc
     1621 ggcagcgtct cgatgccggt gaggatcatg aaggcgttga agggactgag tgccggtccc
     1681 atgtcgcgca ggccgagcac ccgcgtggcg atggcgaagg caaagttgcc gaaggtctcg
     1741 ccgagcacca tgccgccgta ttcgggccgg ggcttcgaca gcatgggata gcgctcgtcg
     1801 cccatccagt tgaacgagcc gccgtcgacg atcaggccgc cgatggagtt gccgtgtccg
     1861 cccaggaact tggtcgcgga atgcacgatg atgtcggcgc cgtgctcgaa cggccggatg
     1921 aggtagggcg tcgccatggt gttgtcgacg atgaatggga tgcggtggcg cttggcgatg
     1981 tcggcaatcg ccgcgaggtc caccaccacc ccgcctggat tggcgatcga ctcgacgaag
     2041 atcgccttcg tccgctccgt aacggcggcc tcgaaggtcg cgggctcgtc ggaatcggcc
     2101 cagacgacgt tccagccgaa gttcttgtag gaatggttga actggttgat cgagccgccg
     2161 tagagcttcc gcgccgcgat gaactcgtcg ccgggctgca tgagcgcatg catggtcagg
     2221 aactcggccg catggcctga cgcgaccgcg agggccgccg tgccgccctc gagcgccgcg
     2281 acccgctcct ccaggaccgc gcaggtcgga ttgccgatcc gtgagtagat gttgccgaag
     2341 gcctggagcc cgaagagcga cgcggcgtgg tcgacgtcgt cgaacacgaa cgaggtcgtc
     2401 tgatagatgg gcgtcgcccg cgcgccggtg gcgggatccg gcgtcgcccc ggcgtggatc
     2461 gcgagcgtcg caaacccggg ctggcggtcg gtcatggcgg tctcctgcaa ggctggttcc
     2521 ggccttgtag accacaaccc ctgccggtca accgcgccgg cctgctcggg gcacgcttct
     2581 tggcgtgcga ctcagctgcg ccgccccttc ggacgcgact cgcgccccgc tgcaggtgcc
     2641 ggctcgccct cgtcctcgcc ctcgatgtcg acgtcggcgc cgctctgggc ggcgaccagt
     2701 tgctccgtca aagcgacgag gcgccggcgg acggcgcggt tctcgagggt cgcgaaggcc
     2761 ttgagcatgt cgagcgcgtc ggcggtcgca agcaggctcg acacgtcggg gacgttgtcg
     2821 atcgtcgcgc cgccgccttc cgacagaccc tcatagaaga actccaccgg cacgccgagc
     2881 gtctgcgcga tctggtgcag gcggctcacg ctgacccggt tcgtgccttt ctcgtacttc
     2941 tggatctgct ggaacgtgac gcccgacttc tcgcccagct cggtctggct gatgccgacg
     3001 agcatgcgcc gcatccggat gcgggcgccg atgcgggtgt cgacgggcgt ggtggacttg
     3061 ggagcggagc gcatgaacgg cctcgagaaa agctaagccg ctgtgtagtc cagaccggcg
     3121 gttgcgtgaa ggccccctta cgccgcatga acatgtttcg ccaagatgct tagccctacg
     3181 ggcttacccc ccggcgctgg gccccgcaga ttcggcgcgc ccgagctaat ccgctgcggg
     3241 gaaaagcagg cttgcgtcgc cgtacgagta gaatcggtat ccggcgtcga ccgcatgcgc
     3301 gtaggccgtc cgcatggtct cgaggccgga aaacgccgcc accagcatga acaacgtcga
     3361 gcgtggaagg tggaagttgg tcaggagggc gtcgaccgcc cggatacgat ggcccggcg
//
LOCUS       DASQWN010000096         2342 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_17116, whole genome shotgun sequence.
ACCESSION   DASQWN010000096 DASQWN010000000
VERSION     DASQWN010000096.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2342)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2342)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2342
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_17116"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..846)
                     /locus_tag="VE686_01850"
     CDS             complement(<1..846)
                     /locus_tag="VE686_01850"
                     /inference="COORDINATES: protein motif:HMM:NF024799.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LacI family DNA-binding transcriptional
                     regulator"
                     /protein_id="HYY83227.1"
                     /translation="MSRKRSGALTIRDVARSAGVAVGTVSRVLNSHRSVSPEVRERVV
                     EAIRALGYEPDAVAQSMRLRTTRTVACAIRDISIAGFGSFVKAAEEVLRHAGYTLLLT
                     NTDEEPLREIELLRTFTKRRVDGVIMTVSDEADEPLLRTLQEMRVPIVLMDRDIALPL
                     DVVAIDHRGGARAATAHLLGLGHSRIALLTGHASMRPGHERIAGFEEAHRRAGLAAKL
                     VRTGGFSAEFGFEQTAALLDGDEPPSAIIAGGMTMLPGVLHAIAARGLSVPGDISVVA
                     GADTDL"
     gene            complement(869..2143)
                     /locus_tag="VE686_01855"
     CDS             complement(869..2143)
                     /locus_tag="VE686_01855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016844191.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0031317 - tripartite ATP-independent
                     periplasmic transporter complex [Evidence IEA];
                     GO_function: GO:0015556 - C4-dicarboxylate transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0015740 - C4-dicarboxylate transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TRAP transporter large permease subunit"
                     /protein_id="HYY83228.1"
                     /translation="MTALFVGSFGGLLALGFPIYMVLGLTALLLFWVSGQPPIAVAQK
                     IVDELNSQTLLAVPFFVVAATLMERGGIARALIEAASTWVGRVRGGLGLVCVVACMIF
                     AAMCGSSVATAMAMGTVLVPAMLRLNYDRHFAAGVVGASGTLGILIPPSLAMVVYGVI
                     ADESVPRLFLAGVVPGIMQGALIAAWVLFYSYRRGYPKDTASLPGEFWRKNLRALPAL
                     SIPLIVLGGIYGGAATVTEAAALSAIVAIIISVFIYRETKPRDLLSVLAEAMQNSAAI
                     MIIIATALVFGHWITESGLAPWLIATLKGWKLEAWHFLLIINVILLIMGMFLEVFSVL
                     LIAMPVIVPLLKPLGIDPVHFGIVVTINMELALLTPPVGMNLFVLSTITRAPLAEVIR
                     GTTPFVVLMLFLLILITYVPGISLWLPRLVLG"
BASE COUNT          412 a          762 c          853 g          315 t
ORIGIN      
        1 gaggtcggtg tcggccccgg cgacgaccga gatgtcgccg ggcacggata ggccgcgcgc
       61 cgcgatggca tgcagcacgc ccgggagcat ggtcatgccg cccgcgatga tggccgaggg
      121 cggctcgtcg ccgtcgagga gggcggcagt ctgctcgaag ccaaactcgg ccgagaagcc
      181 gccggtccgc acgagctttg cggcgaggcc tgcccggcgg tgcgcctcct cgaagccggc
      241 gatgcgctcg tgcccgggcc gcatggaggc gtgcccagtc aggagggcga tccggctgtg
      301 gccgaggccg agaaggtgcg ccgtcgcggc ccgcgctccg ccgcggtgat cgatggccac
      361 gacgtcgagg ggaagcgcga tgtcgcggtc catcagcacg atcgggacgc gcatctcctg
      421 caaggtgcgg agcagaggct cgtcggcctc gtcgctgacg gtcatgatga cgccgtcgac
      481 gcgtcgcttg gtgaaggtgc gcaggagctc gatctcgcgc agaggctcct cgtcggtgtt
      541 ggtgaggagg agggtgtagc cggcgtgccg gagcacctcc tcggcggcct tcacgaagct
      601 cccgaagccc gcgatcgaga tgtcgcggat ggcgcaggcg acggtgcgcg tggtgcgcag
      661 gcgcatgctc tgggcaacgg cgtccggctc gtagccgagc gcgcggatgg cctcgacgac
      721 ccgctcgcgc acctccgggc tgaccgagcg gtggctgttg agcacgcgcg agacggtgcc
      781 gaccgctacg cccgcggagc gggcgacgtc gcggatcgtc agggcaccgg agcgcttcct
      841 gctcagtgtc tgcctcccgt agccgaccct acccgagcac cagccgcggc agccacagcg
      901 agatgcccgg gacgtaggtg atcaggatga gcaggaagag catgaggacg acgaacggcg
      961 tcgtgccgcg gatcacctcg gcgagcgggg cccgggtgat ggtcgagagc acgaagaggt
     1021 tcatgccgac gggcggggtg aggagcgcga gctccatgtt gatggtgacc acgatgccga
     1081 agtgcacggg gtcgatgccg agcggcttca agaggggcac gatcaccggc atcgcgatga
     1141 ggaggaccga gaagacctcg aggaacatgc ccatgatgag gaggatgacg ttgatgatga
     1201 ggaggaaatg ccaggcctcg agcttccagc ccttcagcgt cgcgatcagc cacggcgcga
     1261 ggcccgactc ggtgatccag tggccgaaca ccagcgcggt ggcgatgatg atcatgatcg
     1321 ccgccgaatt ctgcatcgcc tccgccagca cggacagaag gtcgcgaggc ttcgtctcgc
     1381 gatagatgaa cacactgatg atgatcgcga cgatggccga gagcgccgcc gcctcggtga
     1441 ccgtcgccgc gccgccgtaa atgcctccga gcacgatgag cgggatcgag agagccggca
     1501 gcgcgcgcag gttcttgcgc cagaactcgc cgggcaggct cgccgtgtcc ttggggtagc
     1561 cgcggcggta gctgtagaac aagacccaag ccgcgatcag cgccccttgc atgatgccgg
     1621 gcaccacgcc ggcgaggaac aggcgcggca cggactcatc cgcaatgacg ccatagacca
     1681 ccatggcgag gctcggcggg atgaggatgc cgagcgtgcc ggaggcgcca accacgccgg
     1741 ccgcgaaatg acggtcgtag ttgaggcgca gcatggcagg cacgagcacc gtgcccatgg
     1801 ccattgcggt cgccacgctc gagccgcaca tcgccgcgaa gatcatgcac gcgacgacgc
     1861 agacaaggcc gaggcccccg cgcacgcgcc cgacccaggt gctcgccgcc tcgatgagcg
     1921 ccctcgcgat gccgccccgc tccatcaagg tagcagcgac aacgaagaac ggcaccgcga
     1981 ggagcgtctg cgaattgagc tcgtcgacga ttttctgcgc caccgcgatc ggcggctgcc
     2041 cggagaccca gaacagcagc agcgccgtga gcccgagcac catgtagatc gggaagccga
     2101 gcgcgagcag gccgccgaac gagccgacga aaagcgcagt catctgtatc tccggccggg
     2161 gatggtgccg ttcagtggtg cttgcgttcc ggagcgcgcg accccgtcac ggagttcacg
     2221 cagctttcgg agccgcacta ccgggctccg gagggccggc tcgcgaccgt cctgcgcgcc
     2281 tggtcggcgg tcgagagcac gatcgtcggc ctgctcgccg cgatcacgct gtgcatcgtg
     2341 ct
//
LOCUS       DASQWN010000097         2513 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_711393, whole genome shotgun sequence.
ACCESSION   DASQWN010000097 DASQWN010000000
VERSION     DASQWN010000097.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2513)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2513)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2513
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_711393"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(106..1929)
                     /gene="yidC"
                     /locus_tag="VE686_01860"
     CDS             complement(106..1929)
                     /gene="yidC"
                     /locus_tag="VE686_01860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012253786.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0032977 - membrane insertase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="membrane protein insertase YidC"
                     /protein_id="HYY83229.1"
                     /translation="MRDDNKNLILAIALSGVVLFGWNYFYGTPLNKPPQTTSQSTPTR
                     NPADPSQPSPSQAGGPSVPIPGTTPAAQAGAPETREAALARSPRLRVDTPSISGSIAL
                     KGGRVDDVSLKRYHETVDPKSPNIVLLSPSGSPTPHYAEFGWVGTAPGAMPGPETLWT
                     ADADVLTPQKPVTLTFDNGQGLVFRRTISVDDRWMFTVKDAVENRGAAPVTVHPYGLV
                     SRHGKPTTLGYYVLHEGMTGVLGDQGLQEYTYDSIEKEKAIPGQATKGKVWPGVTGGF
                     VGITDKYWAAAAIPDQAMPYTGSFTERDEGRSKVYQANVLGEARTVQAGASSEVTQRL
                     FAGAKEVAAVDAYERNLGIKRFDLLIDWGWFYFITKPLFKVMDYIYHLLGNFGLAILI
                     VTVMLKILFFPLANKSYASMAKMKAVQPEMVAIRERFADDKVKQQQALMDLYKKEKIN
                     PVAGCWPMLIQIPVFFALYKVLFVTIEMRHAPFYGWIRDLAAPDPTNLFNLFGLLPFT
                     PPEFFHLGIWPIIMGITMFLQMKMNPEPPDPIQRQMFAWMPLVFTFMLASFPAGLVIY
                     WAWNNLLSVTQQYFIMRKNGVKVELWDNLRGMVPKKAAAKG"
     gene            complement(1953..2387)
                     /gene="rnpA"
                     /locus_tag="VE686_01865"
     CDS             complement(1953..2387)
                     /gene="rnpA"
                     /locus_tag="VE686_01865"
                     /EC_number="3.1.26.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009763747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004526 - ribonuclease P activity
                     [Evidence IEA];
                     GO_process: GO:0006396 - RNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease P protein component"
                     /protein_id="HYY83230.1"
                     /translation="MRAERRVGRLTKRSEFVAAASGRRFHTERMTVQGLVRPSDAGSQ
                     DLLPSLRVGFTVTKRAGHATERNRMRRRLRAAALEALGPRSDVPADLVVIARRPVLTA
                     EFRSLVADLERAVAVVTKPKPGANAEPKLKTDSKPTSRPPLT"
     gene            complement(2402..>2513)
                     /gene="rpmH"
                     /locus_tag="VE686_01870"
     CDS             complement(2402..>2513)
                     /gene="rpmH"
                     /locus_tag="VE686_01870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010659431.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="50S ribosomal protein L34"
                     /protein_id="HYY83231.1"
                     /translation="KLVRKRRHGFRSRMATVGGRKVIATRRARGRKRLSA"
BASE COUNT          372 a          791 c          925 g          425 t
ORIGIN      
        1 tcgttacggg acatcaacct ttcccgagcg agagcaaacg aaaacaggcc cgggagtggc
       61 ccgggcctgt ttgggtcttg tcgtcggtcg tcgtgggcgt cgggatcagc ccttggcggc
      121 ggctttcttg ggcaccatgc cgcgcaggtt gtcccagagc tccaccttca cgccgttctt
      181 gcgcatgatg aagtactgct gcgtcaccga gagcaggttg ttccaggccc agtagatcac
      241 gaggccggcc gggaacgagg ccagcatgaa ggtgaagacg aggggcatcc aggcgaacat
      301 ctgccgctgg atcgggtccg gcggctccgg gttcatcttc atctgcagga acatcgtgat
      361 gcccatgatg atgggccaga tgccgaggtg gaagaactcc ggcggcgtga acggcagcag
      421 cccgaacagg ttgaagaggt tcgtcgggtc gggcgccgcg aggtcgcgga tccagccgta
      481 gaacggcgcg tgccgcatct cgatggtgac gaacaggacc ttgtagaggg cgaagaacac
      541 cgggatctga atcagcatgg gccagcagcc cgcgaccggg ttgatcttct ccttcttgta
      601 caggtccatc agcgcctgct gctgcttcac cttgtcgtcc gcgaagcgct cgcggatggc
      661 caccatctcg ggctgcacgg ccttcatctt ggccatggag gcgtaggatt tgttggcgag
      721 cgggaagaac aggatcttca gcatcacggt cacgatgagg atcgcgaggc cgaagttgcc
      781 gagcaggtgg tagatgtaat ccatcacctt gaagagcggc ttggtgatga aatagaacca
      841 gccccagtcg atgagcaggt cgaagcgctt gatgccgagg ttgcgctcgt aggcgtcgac
      901 cgccgcgacc tccttggcgc cggcgaagag gcgctgcgtc acctcgcttg aggcgcccgc
      961 ctggacggtg cgcgcctcgc cgagcacgtt ggcctggtag accttgctcc ggccctcgtc
     1021 gcgctccgtg aagctgcccg tgtacggcat ggcctggtcg gggatcgcgg ccgcggccca
     1081 gtacttgtcg gtgatgccga cgaagccgcc cgtgacgccg ggccagacct tgcccttggt
     1141 ggcctggccg gggatggcct tttccttctc gatcgagtcg taggtgtact cctgcaggcc
     1201 ctggtcgccg aggacgcccg tcatgccctc gtgcagcacg tagtagccga gcgtcgtcgg
     1261 cttgccgtgc cgcgagacga ggccataagg gtgcacggtg acgggggcgg cgccgcggtt
     1321 ctcgacggcg tccttgacgg tgaacatcca gcggtcgtcg acgctgatgg tgcgccggaa
     1381 gaccagcccc tggccattgt cgaaggtgag cgtgacgggc ttttgcggcg tcagcacgtc
     1441 cgcatccgcc gtccacagcg tctcggggcc cggcatcgcg cccggggccg tgccgaccca
     1501 gccgaactcg gcgtagtgcg gcgtcgggct gcccgacggc gacaggagca cgatgttggg
     1561 gctcttgggg tcgacggtct cgtggtagcg cttgagcgag acgtcgtcga cgcggccgcc
     1621 tttcagggcg atggagccgc tgatcgaggg ggtgtcgacc cgcaggcgcg ggctgcgggc
     1681 aagggccgcc tcgcgggtct cgggcgcgcc cgcctgggcc gccggggtcg tgccggggat
     1741 cggcaccgag gggccgccgg cctggctcgg cgagggctgg ctcgggtcgg ccgggttccg
     1801 cgtcggggtc gactgggacg tggtctgcgg cggcttgttg agcggcgtgc cgtagaagta
     1861 gttccagccg aacaggacca cgcccgagag cgcgatggcc aggatgaggt ttttgttgtc
     1921 gtcgcgcatc ggtgcccgtg gcgcccattc aatcaggtga ggggaggtcg gctggtcggc
     1981 ttggagtcgg tcttcagctt gggctccgcg ttggcccccg gcttgggctt cgtcacgacc
     2041 gcaacggcgc gctcgagatc ggccacgagc gaccggaact cggccgtcag gaccggccgt
     2101 cgcgctatca cgacaagatc ggcggggaca tccgaacggg gcccgagggc ttcgagcgcc
     2161 gccgcccgga ggcgccgccg catgcggttg cgttcggtgg cgtggccggc gcgcttggtc
     2221 actgtgaacc cgacgcgcag gctcggcagc aggtcctgcg acccggcgtc cgagggccgg
     2281 acgaggccct ggaccgtcat ccgctccgta tggaagcggc ggccagaagc cgccgcgacg
     2341 aactcagatc gcttggtgag gcgcccgacc ctgcgctcgg cgcgcatcgc gggacgccgc
     2401 gtcaggccga caggcgcttg cgcccccgcg cccggcgcgt ggcgatgacc ttgcgcccgc
     2461 cgaccgtcgc catgcgcgag cggaagccat ggcggcgctt gcggacgagc ttg
//
LOCUS       DASQWN010000098         2312 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1009029, whole genome shotgun sequence.
ACCESSION   DASQWN010000098 DASQWN010000000
VERSION     DASQWN010000098.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2312)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2312)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2312
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1009029"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..108)
                     /locus_tag="VE686_01875"
     CDS             complement(<1..108)
                     /locus_tag="VE686_01875"
                     /inference="COORDINATES: protein motif:HMM:NF012334.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY83232.1"
                     /translation="MTGAASGIGRATAAALRQRGAEVVGVDLVDAPEELA"
     gene            221..1039
                     /locus_tag="VE686_01880"
     CDS             221..1039
                     /locus_tag="VE686_01880"
                     /inference="COORDINATES: protein motif:HMM:NF013757.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IclR family transcriptional regulator"
                     /protein_id="HYY83233.1"
                     /translation="MTPTAATGAPDAGAATKTRIQSVARASQVLLWVADQPHGATAKE
                     IAASQGLALPTTYHLLNTLVDEGLLAKDVHRRYILGRGSAILAQAYLRGKAVPEGLLA
                     VLREVARRTGETSYLADWGEYEIRVLASVEGSRMLRVAEAGTGVYEHAHARANGKVLL
                     AYAQPEVRDTYLRAHPLVPVTENTICDRKALDRELDRIRERGYAYDEQEFALGVSCVG
                     APLLHNGQLIAALGLSVPADRMEKDRAELTKVLLEVTSGSTAGVSAGEFVTAAV"
     gene            1161..>2312
                     /locus_tag="VE686_01885"
     CDS             1161..>2312
                     /locus_tag="VE686_01885"
                     /inference="COORDINATES: protein motif:HMM:NF024799.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="substrate-binding domain-containing protein"
                     /protein_id="HYY83234.1"
                     /translation="MRHRLISAVAVVAVAALLPAACGGDDDSGGNAGGSSSSEFGTGL
                     KLGAGTGTAKVGASVAPWYVWNADKCAFEKTDDHPAEYKAETRKIEGDAPRLGYMHYG
                     NTDPFGVAVSKSIESEAKAAGMDVNVYNLKFPSRTEPQSVANTSVTKQDDVVVQANLD
                     PTVLPEFFKIIEGKGCAPSIQLFIPIDDHPGMGNNWPDVGDVIGKYIAEQATERGWKP
                     EDTALVQCTDRDSGPTVNIMFDYVPKAMKSGGFEVPKDNVFNIVCGLTDPQSGYKKIT
                     DWYTGHPDFKHAAFSAIDSIRSVEMARAIKDEGRPKSDSILAAGADDASSRASVRAGG
                     QDMSVAFFGEKFGTWIVPMVEDILAGNPVPSFVGTELIPLTAENVDEYYP"
BASE COUNT          414 a          771 c          782 g          345 t
ORIGIN      
        1 cgcgagctcc tccggggcgt cgacgagatc cacgccgacc acttcggcgc cgcgctggcg
       61 cagcgcggcc gccgttgcgc gcccgatccc tgaggcggcg cccgtcacga cggcgatgcg
      121 gggcgcaggg gaaggactca attcaacctc ttcctttcat caactgaagc gcggtacgct
      181 ttgctgaata cgacttgtac cacgaccagg agtccagaca atgacgccga ccgctgcgac
      241 cggtgcgccc gacgctggcg ccgcgacgaa gacccgcatc cagtcggtcg cgcgggcatc
      301 ccaggtcctg ctctgggtgg cggaccagcc gcacggcgcg accgccaagg agatcgctgc
      361 atcccagggt ctcgcgctgc ctacgaccta ccacctgctc aacacgctcg tggacgaggg
      421 cctgctggcg aaggacgtgc atcggcgcta catcctcggc cgcggcagcg caatcctcgc
      481 ccaggcctac ctgcgcggca aggccgtgcc agagggcctg ctggccgtgc tccgcgaggt
      541 cgctcggcgg acgggcgaga cctcttacct ggcggactgg ggcgagtacg agatccgcgt
      601 cctcgcgtca gtcgagggca gccgcatgct gcgcgtcgcg gaggcgggaa ccggcgtcta
      661 tgagcacgcg cacgcccgcg cgaacggcaa ggtgctgctc gcctacgcgc agcccgaggt
      721 ccgcgacacg tacttgcgcg cccaccccct cgtgccggta accgagaaca cgatttgtga
      781 ccgcaaggcg ctcgaccgcg agctcgaccg gatccgcgag cgcggctacg cctacgacga
      841 gcaggagttc gcactcggcg tctcatgcgt gggcgcgccg ctgctccaca acggccagct
      901 gatcgcggcg ctaggactgt cggtgccggc cgatcggatg gagaaggatc gggccgagct
      961 gacaaaggtg ctgctcgagg tcacctccgg ctcaaccgcc ggcgtgtcgg ccggcgagtt
     1021 cgtgaccgct gctgtgtagg ggctcggatc cgcttgacaa acgccggaag cgtcggatag
     1081 cttcacccca catcgtgaac tccagttcat actctggaat cacgaggttg gatacgccgg
     1141 ccgaccgagg ggggttcgaa gtgcggcata ggttgatttc cgcggttgcc gtggttgccg
     1201 tcgcggcgct gctgccggct gcttgcggcg gcgacgacga ctcgggcggc aacgccggcg
     1261 gaagctcgtc cagcgagttc gggaccgggc tgaagctcgg cgccgggacg ggcaccgcca
     1321 aggtcggcgc ctcggtggcg ccctggtatg tctggaacgc ggacaagtgc gcgttcgaga
     1381 agaccgacga tcaccctgcc gagtacaagg cggagacgcg gaagatcgaa ggcgacgcgc
     1441 cgaggctcgg ctacatgcac tacggcaaca ccgacccgtt cggggtcgcg gtgtccaaga
     1501 gcatcgagag cgaggccaag gctgcgggga tggacgtcaa cgtctacaac ctgaagttcc
     1561 cctcgcgcac cgagcctcaa tcggtcgcca acacctcggt gaccaagcag gacgacgtcg
     1621 tcgtccaggc gaacctcgat cccacggttc tgccggagtt cttcaagatc atcgagggca
     1681 agggctgcgc cccctcgatc cagctgttca ttcccatcga cgaccacccg ggcatgggta
     1741 acaactggcc tgacgtgggc gacgtgatcg gcaagtacat cgccgagcag gcgacggagc
     1801 gcggctggaa gccggaggac acggcactcg tgcagtgcac ggaccgggac agcggcccga
     1861 ccgtgaacat catgttcgac tacgtcccga aggcgatgaa gtccggcggt ttcgaggttc
     1921 cgaaggacaa cgtcttcaac atcgtctgtg ggctcacgga cccgcagtcc gggtacaaga
     1981 agatcaccga ctggtatacg ggccacccgg acttcaagca cgccgcattc agtgcgatcg
     2041 actcgatccg ctcggtcgag atggcacgcg ccatcaagga cgagggccgc ccgaagagcg
     2101 actcgatcct cgccgccggc gccgacgacg cgagctcgcg agcgtccgtc cgggcgggag
     2161 gccaggacat gtcggtcgcc ttcttcggcg agaaattcgg gacctggatc gtcccgatgg
     2221 tcgaggacat cctggccggg aatccggtcc cgtcattcgt gggcacggag ctgatcccgc
     2281 tgacggcaga gaacgtggat gagtactacc cc
//
LOCUS       DASQWN010000099         2367 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1108701, whole genome shotgun sequence.
ACCESSION   DASQWN010000099 DASQWN010000000
VERSION     DASQWN010000099.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2367)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2367)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2367
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1108701"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..700)
                     /locus_tag="VE686_01890"
     CDS             complement(<1..700)
                     /locus_tag="VE686_01890"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY83235.1"
                     /translation="MTYGKKDLPYPYSEDFSGVVTRVKGVRGSTRAALVNSLKVASYL
                     KAGANLVERNLGAPASVRGGDGCKAYWSGLHFLSERALSREVADLEPPFLRQKGTGPY
                     RSTWASHDDYLNDLLAFLFHAMNYDPQYGAELETRGDWLATDSSLVDAVERATFNELL
                     AICRMPLFRLQLIVVATADRNDGIHDAIANNYAGALEPWMKVYEATIAARGMRLRQGI
                     TIEQFANILAAITEG"
     gene            927..>2367
                     /locus_tag="VE686_01895"
     CDS             927..>2367
                     /locus_tag="VE686_01895"
                     /inference="COORDINATES: protein motif:HMM:NF012656.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016627 - oxidoreductase activity, acting
                     on the CH-CH group of donors [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase family protein"
                     /protein_id="HYY83236.1"
                     /translation="MTTTQRKPSDVSEKQARQVAEAARESEWRKPSFGKELFLGRFRL
                     DMIDPRPPAEPRPDADEFLAKLEAYVSAEVDGARIEQEARIPDDVFHGLARLGAFGMK
                     IDKEYGGLGLPNLHYCKALTLVGSVNPSIGALLSAHQSIGVPQPLKLFGSPAQKMAFL
                     PRLAAGEVSAFLLTEPDVGSDPARLGTVAEPVEGGYRLNGVKLWATNGTVATLLVVMA
                     RVPDKGITAFVVEGDAAGITVERRNEFLGLRGLENSVTRFHDVFVPETNVIGNLGKGL
                     KIALTTLNTGRLSLPAMCVGAGKWSLNIAREWSAERVQWGHPIGQHEAVAQKIAFIAA
                     TTYAMESMLDLCCVIADDDRNDFRIEAALVKLFASEMAWKVADELIQIRGGRGFEKAA
                     SLAARGERAAEAEQILRDLRINRIFEGSTEIMHLLIAREAVDAHLSVAGDIIDPEAGL
                     GRKARAGARAGAFYAKWLPTLAVGRGQVPS"
BASE COUNT          387 a          757 c          835 g          388 t
ORIGIN      
        1 aaccctccgt gatcgcggcg aggatgttcg cgaactgctc gatcgtgatg ccctgccgga
       61 gccgcatgcc ccgggccgcg atcgttgcct cgtagacctt catccacggc tcgagcgcgc
      121 cggcatagtt gttggcgatc gcatcatgga tcccgtcgtt gcggtcggcg gtggcgacga
      181 cgatcagctg aagccggaac agcggcatcc ggcagatcgc caggagttcg ttgaacgtcg
      241 cccgctcgac ggcatcgacg aggctgctgt cggtggcgag ccagtctccg cgtgtttcca
      301 gctctgcgcc gtattgcggg tcgtagttca tcgcgtggaa gaggaacgcc agcaggtcgt
      361 tgagatagtc gtcgtggctt gcccaggtcg agcggtacgg gcccgtgccc ttctgccgca
      421 gaaacggtgg ttcgaggtct gccacctcgc gcgaaagggc gcgttcggac aagaagtgca
      481 ggcctgacca gtacgcctta cagccgtccc cgccgcggac ggaggccgga gcgccgaggt
      541 tacgttcgac gagattcgcg cccgctttga ggtaagacgc cactttgagc gagttcacga
      601 gggcggcccg ggtcgacccg cggacgccct tgacccgggt gacgacgccc gaaaagtcct
      661 cgctgtaggg gtaaggcaga tccttcttgc cgtacgtcat gaggtgattg ttgtccgctt
      721 cggcgacgct tcaagtacgc acgtgcgtag tactcggagt ctaggcctcg tagagagttc
      781 cgccgcgctg ggcggaggac gaagcggacg accatgcggc agggctaccg ctcggtaaca
      841 ttcgtgggta gcgtgaagcg tagcgaggtc cggcgaggag caccttcgcg gggtgctggc
      901 cgtactcggg tccagggggg tacgccgtga ccacgacgca gcgcaagccg tccgacgtat
      961 cggagaagca ggcccggcag gtagccgagg ccgcgcgcga gtccgagtgg cgcaagccga
     1021 gcttcggcaa ggaactgttc ctcgggcggt tccgactgga catgatcgat ccgcggccgc
     1081 ctgcggagcc acgtcccgac gcggacgaat tcctcgccaa gctggaggcg tacgtctccg
     1141 cggaggtgga cggcgcccgc atcgagcagg aggcccgcat ccccgacgac gtcttccacg
     1201 gcctcgcccg gctcggtgcg ttcggtatga agatcgacaa ggagtatggg ggtctcgggc
     1261 tccccaacct ccactactgc aaggcactga cgctcgtcgg ctcggtgaac ccctccatcg
     1321 gcgcgctctt gtccgcgcac cagtcgatcg gcgtgccgca accgctgaag ctcttcggta
     1381 gccctgcgca gaagatggcg ttcctgcccc ggttggcggc gggcgaggtg tccgcgttcc
     1441 tgctcaccga gccggacgtc ggatccgacc cggcgcgcct gggtaccgtc gccgagcccg
     1501 tcgagggagg ctaccggctc aacggggtga agctctgggc caccaacggc acggtggcca
     1561 ctctgctggt cgtgatggcg cgggtgcccg acaagggcat taccgcgttc gtggtggagg
     1621 gcgacgctgc gggcatcacg gtggaacggc gaaacgagtt cctcggcctg cgcgggctgg
     1681 aaaacagcgt gacccggttc cacgacgtgt tcgtgccgga gacgaacgtc atcgggaacc
     1741 tcggcaaggg cctcaagatc gcgctgacca cgctcaacac cggccggctg tcgctgcccg
     1801 ccatgtgcgt cggcgcgggc aagtggtcgc tcaacatcgc gcgcgaatgg tcggcggagc
     1861 gggtgcagtg ggggcacccg atcgggcagc acgaggccgt cgcccagaag atcgcattca
     1921 tcgccgctac gacgtatgcg atggaatcca tgttggacct gtgttgtgtg atcgccgatg
     1981 acgaccgcaa cgacttccgt atcgaagccg cgctggtcaa actcttcgcc agcgagatgg
     2041 cgtggaaggt cgccgacgag ctgatccaga tacgcggtgg ccgcggtttc gagaaggcgg
     2101 cgtcgctggc cgcccgcggc gagcgcgccg ccgaggccga gcagatcctc cgcgacctcc
     2161 ggatcaaccg catcttcgag ggctccaccg agatcatgca cctgctgatc gcccgcgagg
     2221 cggtggacgc ccacctgtcg gtcgccggcg acatcatcga cccggaggcc gggttgggac
     2281 gcaaggcgcg ggccggtgcc cgcgccggag cgttctatgc gaaatggctc ccgacgctcg
     2341 cggtcggtcg agggcaggtg ccgagcg
//
LOCUS       DASQWN010000100         2083 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_206867, whole genome shotgun sequence.
ACCESSION   DASQWN010000100 DASQWN010000000
VERSION     DASQWN010000100.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2083)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2083)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2083
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_206867"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            97..276
                     /locus_tag="VE686_01900"
     CDS             97..276
                     /locus_tag="VE686_01900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013533286.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY83237.1"
                     /translation="MLVRYDIRPDRDGWTIYDRTTGEPAVVEGFASVALPYADADELV
                     DLLNTLNFLKRPTLH"
     gene            complement(319..831)
                     /locus_tag="VE686_01905"
     CDS             complement(319..831)
                     /locus_tag="VE686_01905"
                     /EC_number="2.3.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015931677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016746 - acyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0071972 - peptidoglycan L,D-transpeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0018104 - peptidoglycan-protein
                     cross-linking [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="L,D-transpeptidase"
                     /protein_id="HYY83238.1"
                     /translation="MRGQSGWVALAAAAVTIAVAAPAAAREVVAFDDGASRPGTIVVR
                     TSERKLYLVLGNGAAIRYPVAVGKAGKQWQGWSKVDGKYVEPAWSPPAEVKRDNPRLP
                     SVIPGGSPRNPMGARALTLTGGEYAIHGTNRPDSIGTYASYGCIRMYNQDIVDLFDRV
                     AVGTHVMVVH"
     gene            complement(974..>2083)
                     /gene="argH"
                     /locus_tag="VE686_01910"
     CDS             complement(974..>2083)
                     /gene="argH"
                     /locus_tag="VE686_01910"
                     /EC_number="4.3.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019402119.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004056 - argininosuccinate lyase activity
                     [Evidence IEA];
                     GO_process: GO:0042450 - arginine biosynthetic process via
                     ornithine [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="argininosuccinate lyase"
                     /protein_id="HYY83239.1"
                     /translation="EGRLRDLIGPVAGRLHTARSRNDQVAVDFRLWVRDALDRADAQL
                     TDLMRALLAQAERHAATVMPGFTHLQSAQPVTFGHHCMAYVEMFSRDRSRVRDARGRL
                     NESPLGAAALAGTSFPIDRDATAEALGFDGPTRNSLDSVSARDFALEYLSAAAICATH
                     LSRLAEEIVVWMSAQFGFVRLPDRWTTGSSIMPQKRNPDAAELVRAKTGRIFGSLVAL
                     LTVMKGLPLAYSKDMQEDKEQVFDAADTLQLALAAMAGMVADLEPVPERLRAAAGAGF
                     STATDLADWLVRSLDMPFRDAHHVTGRLVAEAESRGCGLENLPLEAMRQVEPRIDDAV
                     YEVLGVENSVRSRKSFGGTAPERVLEQVAWWRERV"
BASE COUNT          318 a          710 c          741 g          314 t
ORIGIN      
        1 cctcgagccg gtgcgctacg acgactggga ggtgaagggc ctcgcgagcg acttctgatc
       61 tggccacgct cgctcaagcc ggatacgctc agcaccatgc tcgtgcgcta cgatatccgc
      121 ccggaccgtg acggctggac catctacgac cgcaccacag gcgagcccgc cgtggtcgag
      181 ggcttcgcgt cggtggcgct gccctacgcc gacgcggacg agctcgtcga ccttctcaac
      241 acgctgaact tcctaaagcg cccgacgctg cattagccgg cgcagcaccg gtgcgccccc
      301 tcgacttggg gctcaggctc agtgcacgac catgacgtgg gtgccgacgg caacgcggtc
      361 gaagaggtcg acgatgtcct ggttgtacat gcggatgcag ccgtacgagg cgtaggtgcc
      421 gatagagtcc ggccggttgg tgccgtggat ggcgtactcg ccgccggtga gcgtcagcgc
      481 ccgggcgccc ataggattgc gcggggatcc cccgggaatg accgaaggca ggcgcgggtt
      541 gtcgcgcttg acctctgccg gcggcgacca tgcaggctcg acgtacttgc cgtcgacctt
      601 ggaccagccc tgccactgct tgccggcctt gccgaccgcc accgggtagc gaatggccgc
      661 gccgttgccg agcaccagat acagcttccg ctcgctcgtc ctgaccacga tggtgccggg
      721 ccgggaagcc ccgtcgtcga aggcgacgac ttcgcgggcg gcggccgggg ccgccacggc
      781 gatcgtcact gcggccgccg cgagggcgac ccatccactc tgtccgcgca tccctgaggt
      841 ccttgtcgtt cgaaccttcg ccgtgacaat gcgcgtgagt tcgtgacgtt ccggttggcg
      901 aagatgcctt ccaaatcgtg accgcacggc attcgccgtc agggtgaatc gtcgctgaac
      961 gccgcgcgcg tcgtcagacc cgctcgcgcc accaggcgac ctgctcgagg acgcgctcgg
     1021 gcgcggtacc gccgaagctc ttgcgcgagc ggaccgagtt ctcgacgccg agcacttcgt
     1081 agactgcgtc gtcgatgcgg ggctcgacct gccgcatggc ctcgagtggc agattctcga
     1141 gaccgcagcc gcgggactcg gcctcggcga ccaggcgccc ggtgacgtgg tgggcgtcgc
     1201 ggaatggcat gtcgaggctg cggacgagcc agtcggcgag gtccgtggcg gtggagaaac
     1261 ccgctcccgc cgcggcgcgc aggcgctccg gcacgggctc gaggtccgcg accatgccgg
     1321 ccatggccgc gagcgcgagt tgaagggtgt cggccgcgtc gaagacctgc tccttgtcct
     1381 cctgcatgtc cttcgaatag gcgagcggca gccccttcat gacggtgagc agcgcgacaa
     1441 gggagccgaa gatgcgtccc gtcttggcgc gcacgagctc cgccgcgtcg gggttgcgct
     1501 tctgcggcat gatcgaggag ccggtggtcc agcggtcggg caggcgcacg aagccgaact
     1561 gcgccgacat ccacaccacg atctcctcgg cgagccgcga caaatgggtg gcgcagatcg
     1621 ccgcggcgga caggtactcg agagcaaaat cgcgggccga gacggaatca agcgagttgc
     1681 gcgtcggccc atcgaagccg agcgcttccg cggtcgcgtc ccggtcgatc gggaaggacg
     1741 tgcccgcgag tgcggccgcg ccgagcggcg actcgttcag gcgcccgcgg gcatcgcgca
     1801 cccgcgagcg gtcgcgcgaa aacatctcga cgtaggccat gcagtggtgg ccgaaggtga
     1861 cgggctgggc gctctgcagg tgcgtgaagc cgggcatcac cgtcgcagcg tgccgctccg
     1921 cctgcgccag aagcgcgcgc atcaaatcgg tcagctgggc gtcggcgcgg tcgagcgcgt
     1981 cgcgtaccca gaggcggaag tcgaccgcga cctggtcgtt gcggctgcgc gccgtgtgca
     2041 gccgtcccgc gacgggtccg atcaggtcgc gcaggcggcc ctc
//
LOCUS       DASQWN010000101         7412 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_612627, whole genome shotgun sequence.
ACCESSION   DASQWN010000101 DASQWN010000000
VERSION     DASQWN010000101.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 7412)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7412)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7412
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_612627"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..633
                     /locus_tag="VE686_01915"
     CDS             <1..633
                     /locus_tag="VE686_01915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015930177.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY83240.1"
                     /translation="DRFSATSTGTSRDDDKRGTGAATGAGTGAALGAGAGLLAGLGLL
                     AIPGLGPVVAAGWLASTLVGAGAGAAAGGLLGSLAGAGIDEADAHSYAEAVHRGGTLV
                     TVRATTANHDRIVDILDDDGTVDMDQRQTAWRSEGWTGRYTGGSGTGGTMSDAASSVG
                     RAASKATDKVSDAASAAGSAMGLNDDRRGTGTATGRSDVSSSRRVRSYPL"
     gene            complement(699..1076)
                     /locus_tag="VE686_01920"
     CDS             complement(699..1076)
                     /locus_tag="VE686_01920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009493673.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2794 domain-containing protein"
                     /protein_id="HYY83241.1"
                     /translation="MAEGETAEPLRGGMASGVVPFPASAPSQVSFNRQELRRILDLYG
                     RMVAQGEWRDYAIDFTRDKAVFSVYRRTSEMPLYRIEKDPRLARRQGAYAAIAASGLI
                     LKRGHDLERVLHAIDKPLRVVAN"
     gene            complement(1374..2000)
                     /locus_tag="VE686_01925"
     CDS             complement(1374..2000)
                     /locus_tag="VE686_01925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012333449.1"
                     /note="This protein belongs to a clade of uncharacterized
                     proteins related to peroxidases such as the
                     alkylhydroperoxidase AhpD; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology.
                     GO_function: GO:0051920 - peroxiredoxin activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peroxidase-related enzyme"
                     /protein_id="HYY83242.1"
                     /translation="MAKAKPAPKKPPAGVLPARQETDVRVTALDLPEGELSPEMKAYF
                     AKCDEKIGFVPNVLRAYAHDDAKLQAFAAMYNDLMLAPSGLSKLEREMIAVAVSSVNR
                     CYYCLTAHGAAVRQLSGDPALGELMGMNYRAADLEPRHRAMLDFAVALSETPWLLEEQ
                     DREDLRSVGFSDRDIWDIAAVAAFFNMSNRMASAVDMRPNPEYHALAR"
     gene            2090..6910
                     /locus_tag="VE686_01930"
     CDS             2090..6910
                     /locus_tag="VE686_01930"
                     /EC_number="1.4.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015315141.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004352 - glutamate dehydrogenase (NAD+)
                     activity [Evidence IEA];
                     GO_process: GO:0019551 - glutamate catabolic process to
                     2-oxoglutarate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-glutamate dehydrogenase"
                     /protein_id="HYY83243.1"
                     /translation="MDATDAASRPAERAKADAGNSALAAFAEALFGRVPAEDLAPYPP
                     AALAQLAAQAFRHLCAPRRGHGPDIRLSDSEVERDGRARDLTILEVVNDNMPFLLDST
                     LAEVVAQGYEPTLVAHPILAVERAADGSLARIVGEASTATADGTKRESFIHVHLPRID
                     DPGARARLTDALAKVYTEVAVAVADWKPMRERVLGIVSAYRSTPPPLPGDEVAEAAAF
                     LEWLASDNFTFLGIREYRLPEHDTAADPVEGTALGILRNPAMRVLRRGRELVAMTPEI
                     RAFMDKPVALIVTKANVQARVHRRAYLDYVGVKLFGADGRLAGEVRIVGLYTSSAYTN
                     ATSEVPYLRHKAGKVIARAGFDPASYSGRALLNVLDSYPRDELFQIDEDTLFRFALEI
                     MNLTERPRIRALARPDEFDRFVSVLVFIPKDRYDTTVRRRVGEFLAQAYRGRVSAAYP
                     AYPEGPLARTHYIIGRDDGATPVVEQADLERGIAGIVRTWGDRLRDSLVESMGGPRAR
                     TLAAKYAEAFSAAYREAFGAEQAIADIGIVERLSDERPRAVDLYRRERDPDTRINLKV
                     FSRGVALPLSERVPLLENLGFRVVNERTYRITPPTAGEAEPIWLHDMALERASGGALD
                     IAAIEAPLEAALLALLRGLAESDGFNRLVIEAGLGWRDVAMIRTLGRYLRQIRVTYAQ
                     DYLAETLARHGGIAERIVALFYARFDPRAPEPERRREGEAAVRADIEARLRDVTSLDD
                     DRILRRFVNLVEAAVRTNFFQLDEGGLPRSTIALKFACAAVEAMPLPKPLFEIFVYSP
                     RVEALHLRFGKVARGGLRWSDRPQDFRTEVLGLVKAQQVKNAVIVPVGAKGGFVPKHL
                     PAPSDRQAWLAEGTESYRIFVRTLLQLTDNIVADGIVHPADTVRHDADDPYLVVAADK
                     GTATLSDTANALSLEAGFWLGDAFASGGSQGYDHKAMGITARGAWEAVKRHFREIDVD
                     IQTQPVTVAGVGDMSGDVFGNGMLLSQSLKLVAAFDHRDIFLDPDPDPARAFVERQRL
                     FALPRSSWQDYDKGLISQGGGVYPRSAKAIPLSPEVRAVLGLDKTEASPAELMHAILM
                     APVDLLWFGGIGTYVRASTESDEEVGDRANDAIRVTGAALRAKVVGEGANLGCTQRGR
                     IEAARNGVRLNTDAIDNSAGVNTSDVEVNIKVALATPVREGQLAFEDRNALLSTMSDE
                     VARLVLRNNYLQTLALSLAERRGVGETGFAQRLMQRLEQQGRLDRAVEFLPDDVALSE
                     RALRGEALTRPELAVLLAYAKLALYDELLASKVPDDPYLGRELERYFPVELRERFPAA
                     IASHKLRREIIATQLANAIVNRGGPTVVTRLLDQTGADAATMAAAYAATRDSFRLGDL
                     NAAIDKLDGAVAGAEQLRLYAEVQDVTMGRIVWFIRNVALASGSLDGVVALYGAGIAE
                     VERTLPETLSPGAKETWAARTTALVDKGVPEDLARRVAALQDLVAAPDIVAVAERTHR
                     AVVDVAATHFAVEGMFRLGTLAGIARQIPAGDYFDRLALDRGIDAIAAAHRKLTAEVI
                     GHGSTGPDAVRVWSEARTGEVARIRDAVDTITASGLTLSKLTVAASLLGDLARG"
     gene            7141..>7412
                     /locus_tag="VE686_01935"
     CDS             7141..>7412
                     /locus_tag="VE686_01935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011083411.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HYY83244.1"
                     /translation="MRVLNRSAPIPRRAIVGWLLFDWACQPFFTLVLTFVYAPYFAAA
                     LAPNPVEGQALWGYATAAAGLALAVLSPVLGSIADASGPKKPWIAGA"
BASE COUNT         1071 a         2702 c         2562 g         1077 t
ORIGIN      
        1 gaccgcttct ccgcgacaag cacgggaacc agccgcgacg atgacaagag gggcaccggt
       61 gccgccacgg gggcagggac cggcgccgcg cttggagccg gcgccggact ccttgcgggc
      121 cttggcctgc tggcaatccc cggccttggt cccgtagtgg cagccggatg gctcgcctcg
      181 acgctcgtcg gcgccggtgc cggtgctgcc gccggcggcc tgctcggctc gctcgccggg
      241 gcgggcatcg atgaggccga tgcacattcg tatgccgagg ccgtccatcg tggcgggacg
      301 ctcgtgacgg tcagggccac gactgccaac cacgaccgca tcgtcgacat cctcgacgac
      361 gacggcacgg tcgacatgga ccagcgccag acggcgtggc ggtccgaagg ctggacgggc
      421 cggtacacgg gcggcagcgg cacgggcggc accatgagcg acgctgcctc gagcgtcggc
      481 cgggcggcct ctaaggctac cgacaaggtc tcggacgctg cttcggcggc cggctccgca
      541 atgggcctga acgatgaccg tcgcggcacc gggaccgcaa cgggccggag cgacgtctcg
      601 tcgagccgtc gggtccgttc gtatccgctg taacacaccg tcaaatccct gcccggcgtc
      661 tgccgggcag gtctgaccta gcctggtctg cacacgacct agttcgccac aacccgcagc
      721 ggcttgtcga tggcgtgaag gacgcgctcg aggtcgtggc cacgcttgag gatcagcccc
      781 gacgcggcga tcgcggcgta ggcgccctgc cggcgcgcca ggcgcgggtc tttctcgatg
      841 cggtagagcg gcatctctga ggtgcggcgg tagaccgaga acacggcctt gtcgcgtgtg
      901 aagtcgatgg cgtagtcgcg ccattcgcct tgcgccacca tgcgcccgta gaggtcgagg
      961 atgcgccgca gctcttgtcg gttgaaggag acctggctcg gcgcggaggc tggaaacggc
     1021 accactccgg atgccatgcc gccgcgcagc ggctctgcgg tttcgccctc ggccatgcgc
     1081 tcttccgtga cggcgggctc ctggacctgc cgcttcacat gatgggggcg cgcgccccgt
     1141 cgcgcaaggc aggtcggacg ctcacgggat cgtcagcgcc tccacgattc cgccgcactg
     1201 gcgccgcggc aatgcccaag ctcggatcga aaaggtctgc agtgtttcga cggcgccggg
     1261 acgggtcttc cggaaactca agccccccag cccatccgga gggcctcgtt caaggcacca
     1321 cgaggcatga aaagggccgc tgcaaagcgg cccttttttc atggcgcctg tgcctagcgg
     1381 gcgagggcgt ggtattcggg gttcgggcgc atgtcgacag ccgaggccat gcggttcgac
     1441 atgttgaaga aggcggccac cgcggcgatg tcccagatgt cgcggtccga gaagccgacg
     1501 ctgcggaggt cctcgcggtc ctgctcctcg aggagccacg gcgtctccga cagcgccacg
     1561 gcgaagtcga gcatggcgcg gtggcgcggc tcgagatcgg cggcgcggta gttcatgccc
     1621 atgagctcgc cgagcgcagg atcgcccgag agctggcgca ccgcggcgcc gtgcgcggtg
     1681 aggcaatagt agcagcggtt cacgctcgac acggcgacgg cgatcatctc gcgctcgagc
     1741 ttcgacaggc ccgagggcgc gagcatgagg tcgttgtaca tggccgcgaa ggcctgcagc
     1801 ttggcgtcgt catgcgcgta ggcgcgcagc acgttgggca cgaagccgat cttctcgtcg
     1861 cacttggcga aataggcctt catttccggc gagagttcgc cctcggggag gtcgagggcg
     1921 gtcacgcgga cgtcggtttc ctgccgtgct gggagcacgc cggcgggggg ctttttaggg
     1981 gcaggctttg ccttcgccat gatgtagtct ccgctgacgt gctgttgcgc aacgagtagc
     2041 cggtgcacgc cggagcgcac aagcagatac gtcagggcgg gaacgcgcaa tggacgccac
     2101 ggacgccgca agcaggccgg ccgaacgagc gaaagccgac gccggaaact ccgccctcgc
     2161 ggccttcgcg gaggccctgt tcgggcgcgt ccccgcagag gacctcgccc cctatccgcc
     2221 ggccgcgctg gcgcaactcg cggcgcaagc gttccggcac ctctgcgcgc cgcgccgggg
     2281 ccacgggccc gacatccgcc tcagcgacag cgaggttgag cgcgacggcc gcgcgcgcga
     2341 tctcaccatc ctcgaggtgg tgaacgacaa catgccgttc ctgctcgact cgaccctcgc
     2401 cgaggtggtc gctcagggct acgagccgac cctcgtggcg catccgattc tcgcggtcga
     2461 gcgcgcggcg gacggctccc tcgcgcgcat cgtcggcgag gcgtctaccg cgacggcgga
     2521 cgggacgaag cgcgaaagct tcatccacgt tcacctgccc cgcatcgacg atcccggcgc
     2581 gcgcgcccgc ctcaccgatg ccctcgccaa ggtctacacc gaggtggcgg tcgcggtcgc
     2641 cgactggaag cccatgcgcg agcgggtgct cggcatcgtc tcggcgtatc gttccacccc
     2701 cccgccccta ccgggcgacg aggttgccga agcggcggcc ttcctcgagt ggctcgcgag
     2761 cgacaacttc accttcctcg gcatccgcga gtaccgcctg cccgagcacg acaccgcagc
     2821 cgaccccgtc gagggcacgg ccctcggcat cctgcgcaat cccgccatgc gcgtcctgcg
     2881 ccgcgggcgc gagctcgtcg ccatgacacc cgagatccgg gccttcatgg acaagcccgt
     2941 ggcgctcatc gtcaccaagg cgaacgtcca ggcgcgcgtg caccggcgcg cctatctcga
     3001 ctacgtcggc gtcaagctgt ttggggcgga cggccgcctc gccggcgagg tgcgcatcgt
     3061 cgggctctac acctcgagcg cctacaccaa tgcgacgagc gaggtgccct acctccggca
     3121 caaggccggg aaggtgatcg cccgcgcggg gttcgacccg gcgagctact ccggacgggc
     3181 gctcctcaac gtcctcgaca gctatccgcg cgacgagctg ttccagatcg acgaggacac
     3241 gctgttccgt ttcgccctcg agatcatgaa cctgacggag cgcccgcgca tccgcgcgct
     3301 tgcccggccc gacgagttcg atcgcttcgt ctccgtcctc gtgttcatcc ccaaggaccg
     3361 ctacgacacg accgtgcgcc gccgggtcgg cgagttcctg gcgcaggctt accgggggcg
     3421 ggtctcggcg gcctatccgg cctatccgga aggcccgctc gcgcggaccc actacatcat
     3481 cggccgcgac gacggcgcga cacccgtcgt cgagcaggcc gacctcgagc gcggcatcgc
     3541 cggcatcgtg cgcacctggg gcgaccgcct gcgggactcg ctcgtcgaga gcatgggcgg
     3601 accgcgcgcg cggacccttg cggcgaaata cgccgaggcc ttctcggccg cgtaccgcga
     3661 ggccttcggg gccgagcagg cgatcgccga catcggcatc gtcgagcggc tctcggacga
     3721 gcgcccgcgc gccgtcgacc tctaccgccg cgagcgcgat cccgacacgc gcatcaacct
     3781 caaggtcttc tcgcgcggcg tcgcgctgcc tctgtcggag cgggtgccgc tgctcgagaa
     3841 cctcggcttc cgcgtcgtca acgagcgcac ctaccgcatc acgccgccga ccgccgggga
     3901 ggcggagccg atctggctgc acgacatggc cctcgagcgc gcctcgggcg gggctctcga
     3961 catcgccgcc atcgaggcgc cgctcgaggc ggcgctgctc gcactgctgc gcgggcttgc
     4021 cgagtccgac ggcttcaatc gcctcgtcat cgaggccggg ctcggctggc gcgacgtggc
     4081 gatgatccgc acgctcggcc gctacctgcg ccagatcagg gtcacctacg cgcaggatta
     4141 tctcgccgag acgcttgccc gccatggcgg catcgcggag cgcatcgtcg ccctgttcta
     4201 tgcccgcttc gatccgcgcg cgcccgagcc ggagcgccgc agggagggcg aggcggccgt
     4261 gcgcgccgac atcgaggcgc gtctgcgcga cgtcacgagc ctcgacgacg accgcatcct
     4321 gcggcgtttc gtcaacctcg tggaagcggc cgtgcgcacg aacttcttcc agctcgacga
     4381 gggcggcctg ccgcgcagca ccatcgcgct caagttcgcc tgcgccgccg tcgaggcaat
     4441 gcccctgccg aagcccctgt tcgagatctt cgtctactcg ccccgggtcg aggcgctgca
     4501 tttgcgcttc ggcaaggtgg cgcgtggcgg actgcggtgg tccgatcggc cgcaggactt
     4561 ccgcaccgag gtgctcgggc tcgtgaaggc gcagcaggtc aagaacgccg tcatcgtgcc
     4621 ggtcggcgcc aagggcggct tcgtgccgaa gcacctgccc gcaccctccg accgtcaggc
     4681 ctggctcgcg gagggcaccg agagctaccg catcttcgta cgcacgctct tgcagctcac
     4741 cgacaacatc gtcgccgacg gcatcgtgca tccggccgac accgtgcgcc atgatgccga
     4801 cgacccgtat ctggtcgttg ccgccgacaa gggcacggcg accctctccg acaccgcgaa
     4861 cgcgctctcg ctcgaggcag gcttctggct cggcgacgcc ttcgcgtcgg gcggcagcca
     4921 gggctacgac cacaaggcga tgggcatcac cgcgaggggc gcgtgggagg cggtgaagcg
     4981 ccacttccgt gagatcgacg tcgacatcca gacgcagccc gtgacggtcg cgggcgtcgg
     5041 cgacatgtcg ggcgacgtgt tcggcaacgg catgctcctg tcgcagagcc tgaagctcgt
     5101 cgccgccttc gaccaccgcg acatcttcct cgatccggac cccgatccgg cgcgcgcctt
     5161 cgtggaacgg cagcgcctct tcgccttgcc ccgatcgagc tggcaggact acgacaaggg
     5221 cttgatctcg caaggcggcg gcgtgtaccc gcgctcggcc aaggcgatcc cgctctctcc
     5281 cgaagttcgc gccgttctcg gcctcgacaa gacggaggcg agcccggccg agctcatgca
     5341 cgccatcctc atggcccccg tcgacctcct ctggttcggc ggcatcggca cctatgtgcg
     5401 cgcctcgacg gagagcgacg aggaggtcgg cgaccgagcc aacgacgcca tccgggtaac
     5461 cggcgcggcc ctgcgcgcca aggtggtcgg cgagggcgcg aacctcggct gcacgcagcg
     5521 cggccgcatc gaggccgcgc gcaacggcgt tcgcctcaac accgacgcca tcgacaactc
     5581 cgccggtgtg aacacctccg acgtcgaggt gaacatcaag gtcgcgctcg cgacgccggt
     5641 ccgcgagggg cagctcgcgt tcgaggaccg caacgccctt ctctcgacca tgagcgacga
     5701 ggtggcgcgc ctcgtgttgc gcaacaacta cctgcagacg ctggcgctct ccctcgccga
     5761 gcggcgcggc gtcggcgaga ccggcttcgc gcagcggctg atgcagcgcc tcgagcagca
     5821 gggccgcctc gaccgcgcgg tcgagttcct gcccgacgac gtcgccctgt cggagcgcgc
     5881 gctccgcggc gaggcgctca cgcggcccga gctcgccgtg ctcctcgcct acgccaagct
     5941 cgcgctgtac gacgagcttc tcgccagcaa ggtgccggac gacccgtatc tcgggcgcga
     6001 gctcgagcgc tacttcccgg tcgagctgcg ggagcgtttc cccgccgcga tcgcctcgca
     6061 caagctgcgg cgggagatca tcgcgaccca gctcgcgaac gccatcgtca accgcggcgg
     6121 gccgacggtg gtgacgcggc tcctcgacca gaccggtgcc gacgccgcca cgatggctgc
     6181 cgcctatgcg gccacgcgcg actccttccg cctcggggac ctcaacgccg ccatcgacaa
     6241 gctcgatggg gccgtcgccg gcgccgagca gcttcggctc tacgccgagg tgcaggacgt
     6301 gaccatgggc cggatcgtct ggttcatccg caacgtggcg ctcgcgagcg ggtcgctcga
     6361 cggcgtcgtg gcgctctacg gcgcaggcat cgcggaggtc gagcgcaccc tgccggagac
     6421 cctttcgcca ggcgccaagg agacctgggc ggcgcggact acggcgctcg tcgacaaggg
     6481 ggtgccggag gacctcgcgc gccgcgtcgc ggccctgcag gacctcgtcg ccgcacccga
     6541 catcgtcgcc gtcgcggagc gcacgcaccg cgcggtggtc gacgtcgcgg cgacgcactt
     6601 cgccgtcgag ggcatgttcc gcctcgggac gctcgcgggg atcgcgcgcc agatcccggc
     6661 cggcgactac ttcgaccggc tcgccctcga ccgcggcatc gacgccatcg cggccgcgca
     6721 ccgcaagctc accgccgagg tcatcggcca cggcagcacc ggacccgatg ccgtcagggt
     6781 gtggagcgag gcgcgaacgg gcgaggtcgc gcgcatccgc gacgccgtcg acaccatcac
     6841 ggcctcgggt ctcaccctgt ccaagctcac cgtcgcggcg agcctgctcg gagacctggc
     6901 gcgtggttga gaacctgcgg gcctcctccc tcgccccgtg cgcgcagcgc gagcgggggt
     6961 ggggggcgcc tctcccgtgc gcgggagagg tcgagtcggc gaagccgacc gggtgagggc
     7021 acccaccgcc gtggtgctgg caacccaggc tcactcgccc accaccctcg ctcgggcctt
     7081 tgaggcccga gccgtccctc cccgcacccg cctgatgcgg gcgggggagg gaggggcgcg
     7141 gtgcgcgtcc tgaaccgctc ggcccccata ccccgccgcg cgatcgtcgg gtggcttctg
     7201 ttcgactggg cgtgccagcc gttcttcacc ctcgtgctga cgttcgtgta cgcgccgtac
     7261 ttcgccgcgg cgctggcgcc gaaccctgtc gaggggcagg cgctgtgggg ctacgcgacg
     7321 gcggcggcgg gactcgcgct cgccgtgctg tcgccggtgc tgggcagcat cgccgacgcg
     7381 agtgggccga agaagccctg gatcgcaggg gc
//
LOCUS       DASQWN010000102         2167 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_711843, whole genome shotgun sequence.
ACCESSION   DASQWN010000102 DASQWN010000000
VERSION     DASQWN010000102.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2167)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2167)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2167
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_711843"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1253)
                     /gene="glnT"
                     /locus_tag="VE686_01940"
     CDS             complement(<1..1253)
                     /gene="glnT"
                     /locus_tag="VE686_01940"
                     /EC_number="6.3.1.2"
                     /inference="COORDINATES: protein motif:HMM:TIGR03105.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004356 - glutamine synthetase activity
                     [Evidence IEA];
                     GO_process: GO:0006542 - glutamine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type III glutamate--ammonia ligase"
                     /protein_id="HYY83245.1"
                     /translation="MTTLDPLAVANGGAPFSAPATADEAREYIRAHGIEFLFAQFVDM
                     HGKPNAKLVPASHFDDLLTDGAGFAGFAAGDIGQSPNSPDMAAMPDVRTLTPLPFRPG
                     VARLACDVHVEGEEWPYCPRTILRRQLDRAKALGYEFKIGAELEYFLVRKKEDGSIEL
                     ADALDTLEQPCYDMRALTRSLDFVSQVARNITALGWDNYATDHEDANGQFEQNFDFAD
                     ALTTCDRAIFFRYMVEAMAQERGLIATFMPKPFAHLTGNGCHFHMSLWKDGENVFEAG
                     PDGDPRGLGLSKDAYHFIGGLKAHAKAYIAVTAPTVTSYKRLVTSTTLSGSTWAPVYI
                     SYGYNNRTQMLRIPAAGRIEDRTVDGSCNPYLGAAAVLAAGLDGIERELDPGEPTTEL
                     NLHEVTQEQRDEVMRKALGSCERED"
     gene            1730..>2167
                     /locus_tag="VE686_01945"
     CDS             1730..>2167
                     /locus_tag="VE686_01945"
                     /inference="COORDINATES: protein motif:HMM:NF013104.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY83246.1"
                     /translation="MGGFVVAQVQNLEDAASAAGQTQDSAILGEQFYFFTVVLMWLIH
                     AGFMSYEAGIARRKNVMATAMKNILTIAVVTPTFYYLGWWIYSCTQPGLAIGPNSSDF
                     TSVTCQGGIPWSDAFGPNLTNNINLIFFLAFLLFSWTTASIMSG"
BASE COUNT          302 a          739 c          769 g          357 t
ORIGIN      
        1 tagtcctcgc gctcgcagct gccgagggcc ttgcgcatga cctcgtcgcg ctgctcctgg
       61 gtcacctcgt gcaggttgag ctcggtggtc ggctcgcccg ggtcgagctc gcgctcgatc
      121 ccgtcgaggc cggcggccag cacggcggcc gcgcccaggt aggggttgca ggagccgtcg
      181 accgtgcggt cctcgatccg cccggccgcc gggatgcgca gcatctgtgt ccggttgttg
      241 tagccgtagc tgatgtacac cggcgcccac gtcgagccgc tcagcgtcgt gctcgtgacc
      301 aggcgcttgt atgaggtgac ggttggcgcc gtcacggcga tgtacgcctt cgcgtgggcc
      361 ttcaggccgc cgatgaagtg gtaggcgtcc ttcgacaggc cgagcccgcg cgggtcaccg
      421 tccggccccg cctcgaagac gttctcgccg tccttccaca ggctcatgtg gaagtggcag
      481 ccgttgccgg tcaggtgcgc gaacggcttg ggcatgaagg tcgcgatcag cccgcgctcc
      541 tgggccatcg cctcgaccat gtagcggaag aagatcgcgc ggtcgcaggt cgtcagcgcg
      601 tcggcgaagt cgaagttctg ctcgaactgg ccgttggcgt cctcgtggtc ggtcgcgtag
      661 ttgtcccacc cgagcgccgt gatgttgcgc gcgacctgcg agacgaagtc gaggctgcgc
      721 gtgagcgcgc gcatgtcgta acagggctgc tcgagggtgt cgagcgcgtc ggcgagctcg
      781 atcgagccgt cctccttctt gcgcacgagg aagtactcga gctcggcgcc gatcttgaac
      841 tcgtagccga gcgccttggc gcggtcgagc tggcggcgca ggatcgtccg cgggcagtac
      901 ggccactcct cgccctcgac gtggacgtcg cacgcgaggc gggccacccc gggccggaac
      961 ggcagcggcg tgagcgtgcg cacgtcgggc atcgcggcca tgtcgggcga gttgggcgac
     1021 tggccgatgt cgccggcggc gaagcccgcg aacccggcgc cgtcggtgag caggtcgtcg
     1081 aagtgcgacg ccgggacgag cttcgcgttc ggcttgccgt gcatgtccac gaactgcgcg
     1141 aagaggaact cgatgccgtg cgcgcggatg tactcgcgcg cctcgtccgc cgtggccggg
     1201 gcgctgaacg gggcgccgcc gttcgcgacg gccagcgggt caagcgtcgt catccggggg
     1261 gctcctccct gtgcggtggc gtgcgcggac cgcgcgtcgg tcacgcggtg gcggccgcca
     1321 gatatatccc gcgcgcgacc ggcgcggcaa tgggtacgcg ggccacgttt tcggggccgg
     1381 aggtgtgtca ccgccacata cttcgccccc gcgagcctcc gaaggactgt ggcgccttga
     1441 cgccgatgtt cccgggcctg taatcccgca cctgcaccgg tccatgagga ggagcagtgt
     1501 cgatggctga gtggcgcggc gcccgcgggg cgccgccgga agggcccgag cacgcgggcg
     1561 gctccacggc cgcctggccg ccgttcgccg ccgctcgtca ccacgccggg accggtcgcc
     1621 ccaccgccgg aaggtcccca cgccgcaccg gggcgtggac gttcgtgact cattccaagg
     1681 tctggccgcg gctcgagacg gccgcgagag gagaggtcag gtaacccata tgggcggatt
     1741 cgtcgtcgcg caggtgcaga acctcgagga cgccgcgagc gccgcgggcc agacgcagga
     1801 cagcgccatc ctgggcgagc agttctactt cttcaccgtc gtcctgatgt ggctgatcca
     1861 cgccggcttc atgtcctacg aagccggcat cgcccgccgc aagaacgtga tggccacggc
     1921 gatgaagaac atcctcacga tcgccgtcgt gacgccgacc ttctactacc tcgggtggtg
     1981 gatctacagc tgcacgcagc ccggcctggc gatcggcccg aacagcagcg acttcacgtc
     2041 agtgacgtgc cagggcggca tcccgtggag cgacgccttc ggcccgaacc tgacgaacaa
     2101 catcaatctg atcttcttct tggcgttcct cctcttctcg tggacgaccg cgtccatcat
     2161 gtcgggc
//
LOCUS       DASQWN010000103         3798 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1208531, whole genome shotgun sequence.
ACCESSION   DASQWN010000103 DASQWN010000000
VERSION     DASQWN010000103.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 3798)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3798)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3798
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1208531"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            45..1361
                     /gene="ugpB"
                     /locus_tag="VE686_01950"
     CDS             45..1361
                     /gene="ugpB"
                     /locus_tag="VE686_01950"
                     /EC_number="7.6.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009763136.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sn-glycerol-3-phosphate ABC transporter
                     substrate-binding protein UgpB"
                     /protein_id="HYY83247.1"
                     /translation="MLRKTAAAVLAFGLMSGTSAMAQTEIQWWHAQTGGNAEVINGLS
                     NEFNASQKDYKVVPTYKGNYPDTMNAGIAAFRAGNAPHIMQVFEVGTATMMAAKGAVK
                     PVYQMMKESGEKFDPNAYLPTVTGYYSTTKGEMLSFPFNSSSTVMWYNKDAFKKAGLD
                     PDKPPKTWPEVFDYAKKLKAAGHDTCGFSNAWVTWVNIEQLSAWHNVPLATKANGLDG
                     WDTELKFNTPFHIRHLQNLVDLQKDKTYDYSGRTATGEGRFTSGECPIMLTSSGFFAN
                     VKNNAKFAFGNAPMPYYPDQKDAPQNSIIGGASLWVMGGKKPEEYKGVAKFLTFLSDT
                     DRQVEIHKASGYLPITKAAYAKAKEQGFYKDQPYLETPLLELTNKEPTENSRGLRFGN
                     MVQLRDVWAEEIEQALAGGKSPKDALDAAVTRGNAMLRQFERTVSR"
     gene            1434..2315
                     /gene="ugpA"
                     /locus_tag="VE686_01955"
     CDS             1434..2315
                     /gene="ugpA"
                     /locus_tag="VE686_01955"
                     /EC_number="7.6.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014438746.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sn-glycerol-3-phosphate ABC transporter permease
                     UgpA"
                     /protein_id="HYY83248.1"
                     /translation="MEKHAILNGKLIPYLLLAPQLLITVIFFYWPAAQAIWQSFLLED
                     AFGLSSEFVGFENYQVLFRRPEYYQAMATTAVFATLVAVLSLSIALWLAAMADKNLKA
                     AGAYKTLLIWPYAVAPAVAGVLWIFMFHPSLGMLARPLRLMGVDWNPLLNGRHALVLV
                     TLASAWKEVAYCFLFFLAGLQSIPRSVIEAAAIDGARPFRRFWTIIFPLLSPTTFFLV
                     VVIVVYVFFDTFGIIDAVTGGGPAGATTTLVYRVYADGRLGGDLGGSAAQSVILMVIV
                     IALTAIQFRYIERKVQY"
     gene            2315..3163
                     /gene="ugpE"
                     /locus_tag="VE686_01960"
     CDS             2315..3163
                     /gene="ugpE"
                     /locus_tag="VE686_01960"
                     /EC_number="7.6.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018480638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_process: GO:0015794 - glycerol-3-phosphate
                     transmembrane transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sn-glycerol-3-phosphate ABC transporter permease
                     UgpE"
                     /protein_id="HYY83249.1"
                     /translation="MVESRRYRNIGAYTVLSLGVLIFAFPVYVAIIASTHENATIMNG
                     NMPLLPGGHAAENYYRTIFLGGVRSAREPVGNMMLNSFIVAMGIAIGKIFISILSAFA
                     IVYYRFPLRKTAFWVIFITLMLPIEVRIYPTYKIVADLGLLDTYTGLILPLIASATGT
                     LLFRQFFMTVPDELLEASKMDGAGAFRFFKDTLVPLSLTTMAALFVIQFIYGWNQYLW
                     PLLITTRDDMQTVVIGIKKLLTTQDALSEWHTAMTTAVLAMIPPVLVVLLMQRLFVKG
                     LVETEK"
     gene            3306..>3798
                     /locus_tag="VE686_01965"
     CDS             3306..>3798
                     /locus_tag="VE686_01965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011661889.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HYY83250.1"
                     /translation="MASVSLDQVRKVYGGSVEAVRGVSLDIEDGSFCVLVGPSGCGKS
                     TLLRMIAGLETITSGAVTIGDRVVNEIEPSERDIAMVFQNYALYPHMNVYNNMAYGLR
                     NRGTPKEDIDARVREAARILAIEPFLTRKPRELSGGQRQRVAMGRAIVRKPQVFLFDE
                     PLSN"
BASE COUNT          678 a         1309 c         1153 g          658 t
ORIGIN      
        1 tgaacaacaa gagcgtcccg acgggacgac gaggaggaaa aatcatgctc aggaagaccg
       61 ctgcggccgt tctcgccttc gggctcatgt cgggcacctc ggcgatggcg cagaccgaga
      121 tccagtggtg gcacgcccag acgggcggca acgccgaggt gatcaacggg ctgtccaacg
      181 agttcaacgc gtcccagaag gactacaagg tcgtcccgac ctacaagggg aactaccccg
      241 acacgatgaa cgccggcatc gccgcgttcc gcgccggcaa cgcgccgcac atcatgcagg
      301 tcttcgaggt cggcaccgcg accatgatgg ccgccaaggg cgccgtgaag cccgtctatc
      361 aaatgatgaa ggaatcgggc gaaaagttcg acccgaacgc atatctgccg acggtcaccg
      421 gctactactc gacgacgaag ggcgagatgc tctcgttccc gttcaactcg tcctccacgg
      481 tgatgtggta caacaaggat gcgttcaaga aggccgggct cgaccccgac aagccgccga
      541 agacctggcc ggaggtgttc gactacgcca agaagctgaa ggcggccggc cacgacacct
      601 gcggcttctc gaacgcctgg gtcacctggg tcaacatcga gcagctctcg gcctggcaca
      661 acgtgcccct cgccaccaag gcgaacggcc tggacggctg ggacacggag ctgaagttca
      721 acacgccgtt ccacatccgc cacctgcaga acctcgtcga tctgcagaag gacaagacct
      781 acgactactc gggccgcacg gcgacgggcg agggccgctt cacctcgggc gaatgcccga
      841 tcatgctgac ctcctcgggc ttcttcgcca acgtgaagaa caacgccaag ttcgccttcg
      901 gtaacgcgcc gatgccgtac taccccgacc agaaggacgc gccgcagaat tcgatcatcg
      961 gcggcgcctc cctgtgggtc atgggcggca agaagccgga ggaatacaag ggcgtcgcga
     1021 aattcctaac gttcctctcc gacaccgatc gccaagtcga aatccataaa gcctcgggct
     1081 atcttccgat caccaaggcg gcctacgcga aggcgaagga gcagggcttc tacaaggacc
     1141 agccctacct cgagaccccg ctcctcgagc tcaccaacaa ggagccgacc gagaactcgc
     1201 gcggcctgcg cttcggcaac atggtgcagc tgcgcgacgt ctgggccgag gagatcgagc
     1261 aggcgctcgc gggcggcaaa tcgcccaagg acgccctcga cgcggccgtg acgcgcggca
     1321 acgccatgct gcgccagttc gagcgcacgg tcagccggta actctctctc gacacgaagg
     1381 gccgccctcg ccgcggccct tctttcgcgc gtgtgcgaaa gacgccgagg atcatggaaa
     1441 agcacgccat tctcaacggg aagctgatcc cctacctgct cctcgcgccc cagctcctga
     1501 tcaccgtcat cttcttctac tggcccgccg cccaggcgat ctggcagtcg ttcctgctcg
     1561 aggacgcctt cgggctctcg agcgagttcg tcggcttcga gaactaccag gtcctgttcc
     1621 ggcggcctga gtactaccag gccatggcga cgaccgcggt gttcgccacg ctcgtggcgg
     1681 tgctgtcttt gtcgatcgcg ctttggctcg ccgccatggc cgacaagaac ctcaaggccg
     1741 cgggcgccta caagacgctg ctgatctggc cctatgcggt ggcgcctgcc gtcgcgggcg
     1801 tcttgtggat cttcatgttc cacccgtcct taggcatgct cgcccggccc ctgcggctca
     1861 tgggcgtcga ctggaatccg ctgctcaacg gccgccacgc cctggtgctc gtgactctcg
     1921 cgtccgcgtg gaaggaggtg gcctactgct tcctgttctt ccttgccggg ctgcagtcga
     1981 tcccgcgcag cgtcatcgag gctgcggcga tcgacggcgc gcggccgttc cgccgcttct
     2041 ggaccatcat cttcccgctg ctctcgccga ccacgttctt cctcgtggtg gtgatcgtgg
     2101 tctacgtctt cttcgacacc ttcggcatca tcgacgcggt cacgggtggc ggcccggccg
     2161 gcgctacgac caccctcgtc taccgggtct atgccgacgg ccggctcggc ggcgacctcg
     2221 gcggctcggc cgcgcagtcg gtcatcctca tggtcatcgt cattgcgctg acggcgatcc
     2281 agttccgcta catcgagcgg aaggtgcagt actgatggtc gagagccgcc gctaccgcaa
     2341 catcggcgcc tatacggtgc tgagcctcgg ggtgctgatc tttgcgttcc ccgtctacgt
     2401 cgccatcatc gcctcgacgc acgagaacgc gacgatcatg aacggcaaca tgccccttct
     2461 gccgggcggg cacgcggccg agaactacta ccgcaccatc ttcctgggcg gcgtgaggtc
     2521 ggcgcgcgaa ccggtcggca acatgatgct gaactcgttc atcgtagcca tgggcatcgc
     2581 catcggcaag atcttcatct cgatcctctc ggccttcgcg atcgtctact accgcttccc
     2641 gctccggaag acggcattct gggtcatctt catcaccctc atgctaccga tcgaggtgcg
     2701 catctatccg acctacaaga tcgtcgccga cctcggcctg ctcgacacct acacggggct
     2761 gatcctgccg ctcatcgcct cggccaccgg cacgcttctg ttccggcagt tcttcatgac
     2821 tgtgccggac gagttgctcg aggcgtcgaa gatggacggc gccggcgcct tccggttctt
     2881 caaggacacg ctggtacccc tgtcgctcac cacgatggcg gcgctgttcg tgatccagtt
     2941 catctacggc tggaaccagt acctctggcc gctgctcatc accacgcgcg acgacatgca
     3001 gactgtcgtc atcggcatca agaagctgct gaccacccag gacgccctca gcgagtggca
     3061 cacggcgatg accacggcgg tgctcgccat gatcccgccc gtgctcgtcg tcctcctgat
     3121 gcagcgcctg ttcgtgaagg gcctggtgga gacggagaaa tgatgcgcga gcgcggctcg
     3181 cgcgccgtcc ttgggcggcg caacgcgccg caccgaggat cccgggacaa caagggcgcc
     3241 ctatgtggtg cgaggtcctc gggtgccgct cgcgcgcgcc cgaggatgac ggagatagcg
     3301 tacacatggc cagcgtaagc ctcgatcagg tccggaaagt ctacggcggc agcgtcgagg
     3361 ctgtgcgggg ggtctcgctc gacatcgagg acggctcgtt ctgcgtgctc gtcggcccgt
     3421 ccggctgcgg caagtccacg ctgctgcgca tgatcgccgg gctcgagacc atcacgtccg
     3481 gcgcggtcac cataggtgac cgggtcgtga acgagatcga gccctccgag cgcgacatcg
     3541 ccatggtgtt ccagaactac gcgctctacc cgcacatgaa cgtctacaac aacatggcct
     3601 acggcctgcg caaccgaggc acgcccaagg aggacatcga tgcgcgggtg cgcgaggcgg
     3661 cccgcatcct cgcgatcgag ccgttcctca cgcgcaaacc gcgcgagctc tcgggcgggc
     3721 agcgccagcg cgtcgccatg ggccgcgcca tcgtgcgcaa gcctcaagtg tttctcttcg
     3781 acgagccgct gtcgaatc
//
LOCUS       DASQWN010000104         2827 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1208830, whole genome shotgun sequence.
ACCESSION   DASQWN010000104 DASQWN010000000
VERSION     DASQWN010000104.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2827)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2827)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2827
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1208830"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            389..1390
                     /locus_tag="VE686_01970"
     CDS             389..1390
                     /locus_tag="VE686_01970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008971168.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TRAP transporter substrate-binding protein"
                     /protein_id="HYY83251.1"
                     /translation="MKRRDVLRLTTAAFASGALGASGFPALAQAKMVLKATDVHPLGY
                     PTVEAVVRMGKKLEEATQGRLSIQMYPSMQLGGEKEMIEQAQVGALAIARISVGPMGP
                     IVPELNVFNLPFMFRDAEHMEKVIDGDIGKELLKKLSDHPTAGLIGLCWMNAGSRNVY
                     NSKRPIKQVEDLKGLKIRMMGNPVFVDTMNALGGNGVAMGFDQLINAMQTGVVDGAEN
                     NEPSYATGQHYRYAKYYSNTGHLIIPEILVFSKRTFQSLPKDDQALILKLAGEAQQEQ
                     RTLWYEMEKKSLEDMKKAGVEIVDVADRKPFQAAVKPVWDKYGTQLGPLIQRIQDVK"
     gene            1437..1955
                     /locus_tag="VE686_01975"
     CDS             1437..1955
                     /locus_tag="VE686_01975"
                     /inference="COORDINATES: protein motif:HMM:NF016200.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TRAP transporter small permease"
                     /protein_id="HYY83252.1"
                     /translation="MKAQYLRLMEALHRACLFAAGVCLVVITLIIPWGVFTRYVLNSA
                     SSWPEPLAVLLMIVLSFLSAVICYREYLHIGVGVLPALLGPRPKALLGWLIEACMMAT
                     NLFLLWYGIKLVQATWHQSIAEFPIVSVGASYLPVPIAGGVTALFIVERLLTREFFRD
                     HTIETTSTIATE"
     gene            1977..>2827
                     /locus_tag="VE686_01980"
     CDS             1977..>2827
                     /locus_tag="VE686_01980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008961032.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0031317 - tripartite ATP-independent
                     periplasmic transporter complex [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0008643 - carbohydrate transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TRAP transporter large permease"
                     /protein_id="HYY83253.1"
                     /translation="MDILILLGGFTVLCLMGMPVAYALGLSAILAAIYIDLPLEAIAL
                     KTSDGMDDFPLLAIPFFILAGGIMAEGGMAERIINLARVFVGFIRGGLALVNILASTM
                     FGAISGSSVADTASIGSVMIPQMIKAGYPRLFAVNVTISGSLQPLLIPPSHNAVIYSL
                     AAGGTVSVGALFMAGVIPGLLLGLSLMILCLIIAKRQNFPKGEIYTFRQALCIAADAF
                     WGLITVLIILGGILSGIFTPTESAAVACIYAFIITMFVYRDYKWSEVPLLIARVVRTV
                     GMVMIMIG"
BASE COUNT          481 a          941 c          904 g          501 t
ORIGIN      
        1 gagacgacga tctcgcagcc gcgtgcatgc tcggcgaggc ccgccgcgtc gagaacctcg
       61 cccgtcggat tgacgcgtac ctcggccatc tcgcgcaagg ccgcgacggc gcgcgggccg
      121 tagtagttct ccagcatgtc ggggatgtgc gtcaggaaca cggtcgccat tcaaaccctc
      181 caacgcgcga gcgctgggca tcgaagcagg ttggagggct tcgcgatatc ccccggcctg
      241 gcgacccgcg atgcaccttg aaagcgcatc ggcttccatg cagtctccac cctaggggag
      301 acatccggga tacgcacgag gcggaacccg gccgtcgcgg cgtcaagacc gcgaggctcg
      361 ccagggagcg gacatcaggg agggatcgat gaagaggcgt gacgttctgc ggctcacgac
      421 ggccgccttc gcgagcggtg cgctcggcgc gagcggattc cctgccctgg cgcaggccaa
      481 gatggtgctc aaggcgaccg acgtgcaccc tctcgggtac ccgaccgtcg aggccgtcgt
      541 ccgcatgggc aagaagctcg aggaggcgac ccaggggcgc ctatcgatcc agatgtaccc
      601 gtctatgcag ctcggcggcg agaaggaaat gatcgagcag gcgcaggtcg gcgcgctcgc
      661 catcgcccgc atcagcgtcg ggcccatggg gccgatcgtg cccgagctca acgtcttcaa
      721 cctgcccttc atgttccggg acgcagagca catggagaag gtgatcgacg gcgacatcgg
      781 caaggagctt ctgaagaagc tctccgacca tccaacggcc ggcctcatcg gcctgtgctg
      841 gatgaacgcc ggcagccgca acgtctacaa ttcgaagcgg cccatcaagc aggtcgagga
      901 cctgaaaggc ttgaagatcc ggatgatggg caacccggtg ttcgtcgaca ccatgaatgc
      961 gctgggcggc aacggcgtcg ccatgggctt cgaccagctc atcaacgcca tgcagaccgg
     1021 cgtcgtcgac ggcgccgaga acaacgagcc gagctacgcc accggccagc actaccgcta
     1081 cgccaagtac tactcgaaca ccgggcacct gatcatcccg gagatcctgg tgttctcgaa
     1141 gcgcaccttc cagtccctgc cgaaggacga ccaagcgctg atcctgaagc tcgccggcga
     1201 ggcgcagcag gagcagcgca cgctctggta cgagatggaa aagaagtcgc ttgaggacat
     1261 gaagaaggcc ggcgtcgaga tcgtcgacgt cgccgaccgc aagccgttcc aggccgccgt
     1321 gaagcccgtc tgggacaagt acggcacgca gctcggaccg ctgatccagc gcatccagga
     1381 tgtgaaatag gcgtgcccgc gccggcacgc ctgcatccct cggcatgagg gatcatgtga
     1441 aagcgcaata tttgcggctc atggaagccc tgcacagggc gtgcctgttc gccgccgggg
     1501 tctgcctcgt ggtgatcacg ctcatcatcc cctggggcgt gttcacccgc tacgtgctca
     1561 acagcgcctc gtcgtggccg gagccgctcg cggtcctgtt gatgatcgtg ctgtcgttcc
     1621 tgtcggcggt gatctgctac cgcgagtacc tgcacatcgg cgtcggcgtg ctgccggcgc
     1681 tgctcgggcc gcggccgaag gcgctgctcg ggtggcttat cgaggcctgc atgatggcca
     1741 cgaacctgtt cctgctctgg tacggcatca agctcgtgca ggcgacgtgg caccagagca
     1801 tcgccgagtt cccgatcgtc tcggtcgggg cgtcctacct gcccgtcccg atcgccggcg
     1861 gcgtgacggc gctgttcatc gtcgagcggc tgctgacccg cgaattcttc cgcgaccata
     1921 cgatcgagac caccagcacc atcgccaccg aataagcgcc aggacggctt tcatccatgg
     1981 acattctcat cctgctcggc ggcttcacgg tcctgtgcct gatgggcatg ccggtcgcct
     2041 acgcgctcgg cctgtcggcg atcctggccg cgatctacat cgacctgccg ctcgaggcga
     2101 tcgccctcaa gacctcggac gggatggacg atttcccgct gctcgcgatc ccgttcttca
     2161 tcctcgccgg cggcatcatg gccgaaggcg gcatggccga gcgcatcatc aacctcgcgc
     2221 gggtgttcgt gggattcatc cggggcggtc tggcgctggt gaacattctc gcgtcgacca
     2281 tgttcggcgc gatctcgggg tcgtcggtgg ccgataccgc ctcgatcggc tcggtgatga
     2341 tcccgcagat gatcaaggcc ggctacccgc gcctgttcgc cgtgaacgtg accatctcgg
     2401 gctccctgca gcccctcctc atcccgccct cgcataacgc ggtgatctac tcgctcgctg
     2461 cgggcggcac cgtgtctgtg ggcgcgctgt tcatggcggg ggtcatcccg ggcctgctgc
     2521 tcggcctgtc gctgatgatc ctgtgcctga tcatcgccaa gcggcagaac ttcccgaaag
     2581 gcgagatcta caccttccgc caagcgctgt gcatcgcggc cgacgctttc tggggcctga
     2641 tcactgttct gatcatcctc ggcggcatcc tgtcgggcat cttcaccccg acggagtcgg
     2701 cggcggtggc gtgcatctac gccttcatca tcacgatgtt cgtctaccgg gactacaagt
     2761 ggagcgaggt gccgcttctc atcgcgcgcg tcgtgcgtac ggtcggcatg gtgatgatca
     2821 tgatcgg
//
LOCUS       DASQWN010000105         2590 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_18051, whole genome shotgun sequence.
ACCESSION   DASQWN010000105 DASQWN010000000
VERSION     DASQWN010000105.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2590)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2590)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2590
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_18051"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(296..370)
                     /locus_tag="VE686_01985"
     tRNA            complement(296..370)
                     /locus_tag="VE686_01985"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(336..338),aa:Val,seq:gac)
     gene            complement(461..817)
                     /locus_tag="VE686_01990"
     CDS             complement(461..817)
                     /locus_tag="VE686_01990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003603128.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HYY83254.1"
                     /translation="MKILLAEDDNDMRRFLVRALQNAGYDVISFDNGLSAYNRLREEP
                     FELLLTDIVMPEMDGIELARKATELDPDIKVMFITGFAAVALNPDSRAPKDAKVLSKP
                     FHLRDLVNEVEKLMAA"
     gene            1037..1927
                     /locus_tag="VE686_01995"
     CDS             1037..1927
                     /locus_tag="VE686_01995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009763377.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-formylglutamate amidohydrolase"
                     /protein_id="HYY83255.1"
                     /translation="MRPTADFELEPPFVVEEPARQTAPFVFNAPHAGAVYPSAFLAAS
                     RLEGLALRRSEDAFVDALFGDMVALGAPLMTARFPRAYLDVNREPYELDPRMFDGRLP
                     PFANTRSMRVAGGLGTIPRVVADGQEIYASRLSVEEGLRRIERLYKPYHRTLRQLVNR
                     TARGFGYAVLIDCHSMPSSSIAREETCKADVVLGDRYGTSCAGVLTDLVEATLRAHGY
                     SVVRNKPYAGGFITEHYGQPALGRHGLQIEVNRALYMEERTLAPGPGFDALRQDLGHA
                     FAVVMQEIEGDLGPRQIAAE"
     gene            2218..>2590
                     /locus_tag="VE686_02000"
     CDS             2218..>2590
                     /locus_tag="VE686_02000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015688747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inositol monophosphatase family protein"
                     /protein_id="HYY83256.1"
                     /translation="MGLIDFSQFVDELATMSGRAILPFFRSAFSTDDKAPGGVFDPVT
                     EADRAGEVAMRHLIKRSFPTHGIVGEEFGAEREDAEYVWVLDPIDGTRAFMAGLPVWG
                     TLIGLTRLGTPAYGLMHQPFTG"
BASE COUNT          427 a          909 c          837 g          417 t
ORIGIN      
        1 gctcggcggc gagcttgcac tggtgagcca tctcgcccag cagcgcgcgc ccaccgtcgt
       61 cgtgcgtcgc tgcaagctgc ccgacgacgt tgctgacgat aatcctcaaa gcggccacct
      121 ccgcgtcgct cgtcatcgct gctcccttga ggttcggcaa ccggcgctcg accgggcgac
      181 gggcaaacta cacgaggcaa tgcgcggcgt gcgcaacgct cgggccggaa atgctcggta
      241 acgcccgagc gggcgagcga tgcggcgccg tgaaagtgtg gcgcgaaagg tgagatggtg
      301 ggcgcgacag ggattgaacc tgtgacccct acgatgtcaa cgtagtgctc tcccgctgag
      361 ctacgcgccc gggacacgcg agcgacaagg ccgcttcacg cgagagccgg cgatatagcg
      421 gctcggcttt ggtgaggcaa gccggcgccg gggcgccgcc tcaggccgcc atcagcttct
      481 cgacctcgtt cacgaggtcg cgcaggtgga acggcttcga caggaccttg gcgtccttgg
      541 gggccctcga atcggggttg agcgcgaccg cggcgaaacc cgtgatgaac atgaccttga
      601 tgtccgggtc gagctccgtc gccttacggg cgagctcgat gccgtccatc tccggcatga
      661 cgatatcggt gagcaggagc tcgaacggct cctcccggag ccggttgtag gcggacagcc
      721 cattgtcgaa ggagatcacg tcgtagccgg cgttctgcag cgcccgcacg aggaagcggc
      781 gcatgtcgtt gtcgtcttcg gcgagcagga tcttcatgag cgcggcaatc cgtcggcttc
      841 ttcggcggta tgtcattcca taagccgaag agatcgtaaa caagccgtaa cgcctgcggc
      901 atttgcaagc ccgacctttt cgcctgcgcc ttctcggaat ccaacgcgcg ctcggcccga
      961 aagcccatgg acaggggtcg cggcgctcgc cagattgggt caaccgaagc gcgcctcctc
     1021 cggacgtctc gcccgcatgc gcccaaccgc cgacttcgag ctcgagccgc ccttcgtcgt
     1081 tgaggagccg gcgcgtcaga cggcgccctt cgttttcaac gcgccccatg ccggggccgt
     1141 ctatccgagc gcctttctcg cggcctcccg gctcgagggg cttgccctgc gccggtccga
     1201 ggacgccttc gtggacgccc tcttcggcga catggtcgcg ctcggcgcgc ccttgatgac
     1261 ggcccgcttt ccccgagcct atctcgacgt caaccgcgag ccctacgagc tcgacccgcg
     1321 catgttcgac gggcgcctgc cgcccttcgc caacacccgc tcgatgcggg tcgcgggcgg
     1381 gctcggcacc attccgcgcg tcgttgccga cgggcaggag atctatgcgt cgcgcctgtc
     1441 ggttgaagag ggcctgcgcc gcatcgagcg cctctacaaa ccctaccacc gcacgctgcg
     1501 ccagctcgtc aaccgcaccg cccgcggctt cggctacgcc gtgctgatcg actgccattc
     1561 gatgccctcg tcgagcatcg cccgcgagga gacgtgcaag gccgacgtcg tgctcggcga
     1621 tcgctacggc acgagctgtg ccggggtgct cacggacctc gtcgaggcga ccctgcgcgc
     1681 ccatggctat tcggtggtcc gtaacaagcc ctacgccggc gggttcatca ccgagcacta
     1741 cggccagccg gctctcgggc gccacgggct gcagatcgag gtcaaccggg cgctctacat
     1801 ggaggagcgc acgcttgctc cgggcccggg cttcgacgcc ctgcgccagg atctcggaca
     1861 cgctttcgcg gtcgtcatgc aggagatcga gggcgacctc ggcccgcgcc agatcgcagc
     1921 cgagtagccg cccgaagccg cccttcaccg ctcggcgaaa aaaaaggccg ctgttgccag
     1981 cggcccgagt ttagggagga aacgcccaag aagggctacg acaccgcgac gccaatcgcg
     2041 atatcgcaat gcacaattta cgccgcgatg cacaaaacgc aagagcctat ctcatgcgcg
     2101 caaagcatag ctgtttccca aacaggcccg ccgtcagctc atgcgtgcac tgcgcgcggg
     2161 ttgccgtgca acgagcgccc ttctaagacc gccaaggcag gcgcgggcga gggcacaatg
     2221 ggactgatcg acttctcgca attcgtcgac gagctcgcca ccatgtcggg acgggcgatc
     2281 ctgcccttct tccgctccgc cttcagcacc gacgacaagg cgccgggcgg cgtgttcgac
     2341 cccgtcacgg aggccgatcg ggccggcgaa gtcgccatgc ggcacctcat caagcggagc
     2401 ttcccgaccc acggcatcgt cggcgaggag ttcggcgccg agcgcgagga cgccgagtac
     2461 gtctgggtcc tcgatccgat cgacggaacg cgcgcgttca tggccgggct gccggtctgg
     2521 ggcacgctca tcgggctgac ccgcctcggc acgccggcct acggcctcat gcaccagccg
     2581 ttcacgggcg
//
LOCUS       DASQWN010000106         4078 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1208929, whole genome shotgun sequence.
ACCESSION   DASQWN010000106 DASQWN010000000
VERSION     DASQWN010000106.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 4078)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4078)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4078
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1208929"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1064)
                     /locus_tag="VE686_02005"
     CDS             complement(<1..1064)
                     /locus_tag="VE686_02005"
                     /inference="COORDINATES: protein motif:HMM:NF013584.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016810 - hydrolase activity, acting on
                     carbon-nitrogen (but not peptide) bonds [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidase"
                     /protein_id="HYY83257.1"
                     /translation="MTNAGPERLSATQAARRLADGSLTAEALTRACLERIAARPEIAA
                     WASLQPDLALAQARAADRAGRPGMLAGVPIGIKDIIDTADLPTEHGSPIYRGNRPVAD
                     AACVSLTRAAGGVILGKTVTTEFANRHPGATANPHNPGHTPGGSSSGSAAAVADFQVP
                     MAFGTQTAGSVIRPAAYCGVIGFKPTFGHFGPAGIKLQAHSLDTLGVIARTLDDVALM
                     DAVLLGGPVQRVDRDAAAPRIKVCRAAPWGEPDAVTQGLIESTAEGLARQGASLGELT
                     IAPEFNTILEMHGRIMEFEAARSYAFEYDTRFADVSPALREGALARGRALPVAAYAEA
                     IKVAEAFRRFLDDTFADADA"
     gene            complement(1061..2080)
                     /locus_tag="VE686_02010"
     CDS             complement(1061..2080)
                     /locus_tag="VE686_02010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012333685.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009898 - cytoplasmic side of plasma
                     membrane [Evidence IEA];
                     GO_component: GO:0043190 - ATP-binding cassette (ABC)
                     transporter complex [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0015440 - ABC-type peptide transporter
                     activity [Evidence IEA];
                     GO_process: GO:0015833 - peptide transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="oligopeptide/dipeptide ABC transporter
                     ATP-binding protein"
                     /protein_id="HYY83258.1"
                     /translation="MTAILAVNDLKKHFPVKGGWLGGPKAVVHAVDGISFDIARGETL
                     ALVGESGCGKSTVGRAILRLFTITAGQVVLNGERIDDLSAARLRPLRRRMQVVFQDPF
                     SSLNPRMRVRDILAEPIRNFGLASSSEDLDRRVADLLDKVRLPREAAGRLPHEFSGGQ
                     RQRIGIARALAAEPDLIVCDEAVSALDVSVKAQVVNLLQDLQKELGLALLFISHDLAV
                     VEHLTHRVAVMYLGKIVELAGKRELFSAPMHPYTVSLLSAVPVPEPGAGRQRIILKGD
                     VPSPIAPPPGCRFHTRCPYAFARCSVDEPELRLLSSGQYAACHLHDLPPAENPLINAS
                     PGALS"
     gene            complement(2077..3066)
                     /locus_tag="VE686_02015"
     CDS             complement(2077..3066)
                     /locus_tag="VE686_02015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006615666.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HYY83259.1"
                     /translation="MALLEVENLQVHFRTPEGVNRAVDGVSFSVAEGETLAIVGESGC
                     GKSVTANSILRLVPEPPGKIAGSIRFDGTNLLTLRDRQMREIRGNHISMIFQEPMTSL
                     NPVLTVGRQLRETLSLHQGLDREAADNRAFEMLTLVGIPEARRRLREYPHQLSGGMRQ
                     RVMIGMALACNPKLLIADEPTTALDVTIQAQILDLMRDLKRRIGAAIVLITHDLGVVA
                     EVAERVMVMYAGRKVEEAPVRELFRTPRHPYTQGLLGAVPKLGSSVIGAETRLAEIPG
                     LVPSLKERIPGCVFASRCPYATDLCREFAPALEAKAPGHVAACHYAAKELLAA"
     gene            complement(3071..3976)
                     /locus_tag="VE686_02020"
     CDS             complement(3071..3976)
                     /locus_tag="VE686_02020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012333687.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HYY83260.1"
                     /translation="MPFVRPQDIAVAPDLPDILPAPKRRGRVWGFVRRHPAIAAGGTL
                     VIAMMLIAIFADYLWTVDPTTLATSRRTRAPSAQYWFGTDMLGRDIYSRVLYGARVSL
                     VVGFAVAFLASLAGLVIGIVSGFMRFADAIIMRVMDGLMSIPPILLAVALMALTRGSV
                     GNVIMAITIAEVPRVARLVRGVVLSLREQPYVDAAVAAGTRTPMIMLRHILPNTLAPL
                     TVQATHICASAMIIEAVLSFIGAGVPPIIPSWGNIMADGRALWQVKPYIVFFPAIFLS
                     LTVLAVNLLGDGLRDALDPRLAKEI"
BASE COUNT          667 a         1317 c         1494 g          600 t
ORIGIN      
        1 atggcgtcag catcggcaaa agtatcgtcg aggaagcgac ggaaggcttc cgcaaccttg
       61 atcgcttccg cgtaggccgc gacgggaagc gcgcggccgc gggcgagcgc tccctcgcgc
      121 agggccgggc tcacgtcggc aaaacgcgtg tcgtactcga aggcatagct gcgggccgcc
      181 tcgaactcca tgatccggcc gtgcatctcg aggatggtgt tgaactctgg cgctatggtc
      241 agctcgccca aggacgcgcc ctgccgcgcc aggccctcgg cggtgctctc gatgagcccc
      301 tgcgtgactg cgtccggttc gccccacggg gccgcgcggc acaccttgat ccgcggcgcg
      361 gctgcatccc ggtcgacacg ctgaaccggc ccgccgagga ggaccgcatc catcagcgcc
      421 acgtcatcga gcgtgcgggc gatcacgccc agcgtgtcga ggctgtgcgc ctgcagcttg
      481 atccccgccg ggccgaagtg tccgaacgtc ggcttgaagc cgatgacgcc gcaataggcg
      541 gccgggcgga tcaccgagcc cgccgtctgc gtgccgaagg ccataggaac ctggaaatcc
      601 gcgaccgcgg cggccgaacc gctcgaggag ccacctggcg tatgaccggg gttgtgcggg
      661 ttcgcggtcg cgcccggatg gcggttcgcg aactcggtcg tgacagtctt gccgagaatc
      721 acgccgccgg cggcgcgggt gagtgacacg cacgcggcat cggccacggg ccggttgccg
      781 cggtagatgg gcgaaccgtg ttcggtcggc agatcggcgg tgtcgatgat gtccttgatg
      841 ccgatcggga cgccggcgag catgcccggg cgccctgccc ggtccgctgc cctcgcctgc
      901 gccagggcga ggtccggctg caggcttgcc catgccgcga tctcggggcg agccgcgatc
      961 ctttcgaggc acgcgcgggt cagcgcctcg gcggtgaggc tgccgtctgc gagccgccgc
     1021 gctgcttgcg tggcgctcag tctctcgggt ccggcattgg tcaagacagc gcccccgggc
     1081 ttgcgttgat gagcgggttc tccgccggcg gaagatcgtg caggtggcag gcggcgtatt
     1141 ggccgctcga aaggagccgt agctcgggct cgtcgacgga gcagcgggcg aaggcatagg
     1201 ggcagcgcgt gtggaagcgg cacccgggcg gcggcgcgat cgggctcggc acgtcgcctt
     1261 tcaggatgat gcgctgccgc ccggcgcccg gctccggcac cggaacggcc gagagcagcg
     1321 agaccgtgta ggggtgcatg ggcgccgaga atagctcccg cttgcccgcg agctcgacga
     1381 tcttgcccag gtacatcacc gccacccggt gggtcagatg ctcgacgact gcgaggtcat
     1441 gcgagatgaa caggagcgcg aggccgagct ccttctgcag atcttggagc aggttcacca
     1501 cctgagcctt gacggacacg tcgagggccg agacggcctc gtcgcacacg atgaggtcgg
     1561 gctctgccgc gagcgcgcgg gcgatgccga tgcgctggcg ctgcccaccc gagaattcgt
     1621 gcggcagccg cccggcggcc tcgcgcggca ggcgcacctt gtcgaggaga tcggcgacac
     1681 gccggtcgag gtcctcggag gacgatgcaa ggccgaagtt gcggatcggc tcggcgagga
     1741 tgtccctcac ccgcatgcgc gggttgaggc tcgagaacgg gtcctggaag accacctgca
     1801 tgcgccggcg caggggccga agccgtgccg ccgagaggtc gtcgatgcgc tcgccgttta
     1861 gcaccacttg cccggcggtg atggtgaaca ggcgcaggat cgcccggccg accgtcgact
     1921 tgccgcagcc cgactcgccg accagcgcga gcgtctcgcc ccgcgcgatg tcgaacgaga
     1981 ttccgtcaac cgcgtgcacc acggccttcg ggccgcccaa ccagccgccc ttcaccggaa
     2041 agtgcttctt caagtcattg acggcgagga tggcagtcat gctgcgagca gttccttggc
     2101 ggcgtagtgg cacgcggcta cgtggccggg tgccttagcc tcaagcgcag gggcgaattc
     2161 ccggcacagg tcggtggcgt acgggcagcg gctggcgaag acgcagccgg ggatgcgctc
     2221 cttcaggctc ggcacgagac cgggaatttc cgcgagccgc gtctcggccc cgatgacgga
     2281 ggacccgagc ttcggcacgg ccccgagcag gccctgcgtg tagggatgcc gcggcgtgcg
     2341 gaagagctcg cgcacgggcg cctcctcgac cttgcggccg gcgtacatga ccatcacgcg
     2401 ttcggcgacc tccgccacaa cgccaaggtc gtgcgtgatg agcacgatgg cggcgccgat
     2461 gcgtcgcttg aggtcgcgca tgagatcgag aatctgtgcc tggatggtga cgtcgagagc
     2521 ggtcgtcggc tcgtcggcaa tgagaagctt cgggttgcag gcgagcgcca tgccgatcat
     2581 gacccgctgc cgcatgccgc ccgagagctg gtgcggatac tcgcgcaggc ggcggcgcgc
     2641 ctcggggatg ccgacgagag tcagcatctc gaaggcccgg ttgtcggcgg cttcgcggtc
     2701 gagcccctgg tgcaggctca aggtctcgcg cagctgccgg ccgaccgtga gcaccgggtt
     2761 gaggctcgtc atcggctcct ggaagatcat gctgatgtgg ttgccgcgga tctcgcgcat
     2821 ctggcggtcg cgcagggtca gaaggttagt gccgtcgaac cggatcgagc ctgcgatctt
     2881 gcctgggggt tccggcacga ggcgcaggat cgaattcgcc gtcaccgact tgccgcagcc
     2941 gctctcgccg acgatcgcca gggtctcgcc ttcggcgacg ctgaacgaga cgccgtcgac
     3001 ggcgcggttc accccttccg gcgtgcggaa atggacctgc aggttctcga cctcgagcag
     3061 cgccatgcgg ctagatctcc ttcgcgaggc gcgggtcgag agcgtcgcgc aggccgtccc
     3121 cgagaaggtt cacggcgagc acggtcagcg agaggaagat cgcggggaag aagacgatgt
     3181 agggcttgac ctgccacagc gcccggccat cggccatgat gtttccccag gagggaataa
     3241 tgggcgggac gcctgccccg atgaacgaca ggactgcctc gatgatcatg gcgctggcgc
     3301 agatgtgcgt cgcctgcacg gtgaggggag ccaacgtatt gggcaggatg tggcgcagca
     3361 tgatcatggg cgtgcgcgtg ccggcggcaa cggcggcatc gacgtagggc tgctcgcgca
     3421 gggacagcac caccccgcgc acgagcctcg ccacgcgcgg gacctcggcg atggtgatcg
     3481 ccatgatgac gttgccgacg ctgccgcggg tcagcgccat gagggcgacc gcaagcagga
     3541 tcggggggat cgacatgagg ccgtccatga cgcgcatgat gatggcgtcg gcaaagcgca
     3601 tgaaccccga gacgatgccg atgacgagcc cggcgagcga cgccaggaac gccacggcaa
     3661 agcccacgac aagcgagacg cgggcgccgt agaggacacg ggagtagatg tcgcgcccca
     3721 gcatgtcggt gccgaaccag tactgggcgg agggagcgcg ggtccgccgg gacgttgcga
     3781 gcgtggtcgg gtcgaccgtc cagaggtagt cggcaaagat cgcgatcagc atcatggcga
     3841 tgacgagcgt gccgcccgcc gcgatggcgg ggtggcggcg cacgaagccc cacaccctgc
     3901 cccgccgctt cggtgcaggg aggatgtcgg gcagatcggg cgcgaccgcg atgtcctgcg
     3961 gccgtacaaa cggcatgacg ggcgcgttca ataccggatc ctcggatcga gcagggtgta
     4021 gaggaggtcg atcccgaggt tcaccaggac gtagatgaag ctgaagagca gcaccacg
//
LOCUS       DASQWN010000107         2235 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_802536, whole genome shotgun sequence.
ACCESSION   DASQWN010000107 DASQWN010000000
VERSION     DASQWN010000107.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2235)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2235)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2235
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_802536"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(129..1031)
                     /locus_tag="VE686_02025"
     CDS             complement(129..1031)
                     /locus_tag="VE686_02025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003538352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0001216 - DNA-binding transcription
                     activator activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HYY83261.1"
                     /translation="MAADLGDLNAFLAVARAGGFRDGARSTGASASGLSEAVRRLEAK
                     LGVRLLHRTTRSVAPTEAGVRLLERLGPALDEVEAALDVVNGFRDRPAGTLRLNVPVS
                     AVRLVLPRVVPPFLAAYPDIRLEVTAEDGFVDVLAAGCDAGIRYDERLEQDMVAVPIG
                     PRVQRFAAAASPAYLRRRGRPGHPRELLDHACLRGRFASGTMDLWEFERDGEVVRVDS
                     SGPLLVSIGTATDLAVEAAVAGTGVVYLFEDWLRPHLDGGALEPVLEPWWQPFSGPFL
                     YYPGRRLVPAPLRAFIDFVRGSAG"
     gene            1123..2004
                     /locus_tag="VE686_02030"
     CDS             1123..2004
                     /locus_tag="VE686_02030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011654469.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldo/keto reductase family oxidoreductase"
                     /protein_id="HYY83262.1"
                     /translation="MANIERSGAFKLGGRPVKRLGYGAMQLAGPGVFGPPKDRGAALA
                     VLREAVALGVNHIDTSDFYGPHTTNRLIREALAPYPDDLVIVTKVGARRGEDASWLPA
                     YSPEELTAAVHDNLRHLGLEVLDVVNLRIMFDMRGPAEGSIEAPLAALAELQRRGLVR
                     HIGLSNATPAQVAEGRRVCEIACVQNQYNLAHRADDALVDDLARDGIAYVPFFPLGGF
                     NPLQSSTLSDVAQTLGATPMQVALAWLLRRSPNILLIPGTSSVAHLRENLAAGDLEMP
                     ADAMARLDRIAAESARA"
BASE COUNT          346 a          837 c          776 g          276 t
ORIGIN      
        1 ccaagctccc gagccgccac gggcccctcc gccgctcggc gaacagccat aagttcaaga
       61 gtgaccggat gggcagcttc gcgcccttgc cggtcattgc tggcctgctc ggccgtgccc
      121 ggaagcggtc atccggccga acccctgacg aagtcgatga acgcccgcaa cggcgcgggc
      181 accagacgcc gtccggggta gtagaggaac ggcccggaaa agggctgcca ccacggctcg
      241 aggacgggct ccagcgcgcc gccgtccagg tgcgggcgca gccagtcctc gaagaggtag
      301 acgacgccgg tacccgcgac ggccgcctcg accgcgaggt ccgtcgcggt gccgatgctc
      361 accaggagcg gccccgagga atccacccgc acgacctcgc cgtcgcgctc gaactcccac
      421 aggtccatcg tcccgctggc gaagcggccg cgcaggcagg cgtggtccag caactcgcgg
      481 gggtggcccg gcctgccgcg gcggcgcagg taggccgggg acgcggccgc ggcgaagcgc
      541 tggacgcgcg ggccgatcgg caccgcgacc atgtcctgtt ccagccgctc gtcgtagcgg
      601 atgccggcgt cgcagccggc ggccagcacg tcgacgaagc cgtcctccgc ggtcacctcc
      661 agccggatgt cgggataggc ggcgaggaac ggcggcacga cgcggggcag caccagccgc
      721 accgcgctga ccgggacgtt gagcctgagc gtgcccgccg ggcggtcgcg gaagccgttc
      781 accacgtcga gcgccgcttc cacctcgtcc aacgccgggc cgagccgttc gagcaggcgg
      841 acgcccgcct cggtcggcgc gacgctgcgc gtcgtccggt ggagcagcct cacgccgagc
      901 ttcgcttcga gccgccgcac cgcctcgctc aggccggacg cgctggcgcc ggtggaacgc
      961 gccccgtcgc ggaaaccccc ggcgcgcgcc accgcgagga aggcgttcag atcgccgagg
     1021 tcagccgcca tcgttcgccg ctccgcacgg gccgtgcgca ttgtgccccg ttatcgcgca
     1081 aggacgcagc ccttagctga aggccgttca aggagaacgg tcatggccaa catcgaacga
     1141 tccggtgcct tcaagctcgg cggccgcccc gtgaagcggc tcggctacgg cgccatgcag
     1201 ctcgccggac ccggcgtgtt cgggccgccc aaggaccgcg gcgcggcgct ggccgtgctg
     1261 cgcgaggccg tcgcgctggg ggtgaaccac atcgacacca gcgacttcta cggaccgcac
     1321 accaccaacc ggctgatccg cgaggcgctc gcgccctatc ccgacgatct ggtcatcgtc
     1381 accaaggtcg gggcccggcg cggggaggac gcctcatggc tcccggccta ctcgcccgag
     1441 gaattgacag cggcggtgca cgacaacctg cgccatctcg ggctcgaagt gctggacgtg
     1501 gtcaatctcc ggatcatgtt cgacatgcgc ggccccgccg aggggtcgat cgaggcgccg
     1561 ctcgccgccc tggccgagct ccagcggcgg ggcctggtgc gccacatcgg cctgagcaac
     1621 gccacgccgg cgcaggtcgc cgaaggtcgc cgcgtctgcg agatcgcctg cgtgcagaac
     1681 cagtacaacc tggcgcaccg ggccgacgac gccctggtcg acgacctcgc ccgcgacggc
     1741 atcgcctacg tgcccttctt cccgctcgga ggcttcaacc cgctgcagtc gtcgactttg
     1801 tccgacgtcg cgcaaaccct gggcgccacg cccatgcagg tcgcgctcgc ctggctgctc
     1861 cgccgttcgc ccaacatcct cctgataccc ggcacctcgt ccgtcgcgca cctgcgggaa
     1921 aacctcgcgg cgggcgacct cgagatgccg gccgacgcga tggcgcggct ggaccggatc
     1981 gccgcggaga gtgcgcgggc ctgacgcgca cggcttcgaa gggggcggcc ggcggcaccg
     2041 ggggcaggga ccgacgctcg gccaagcgag cacggagcgg tcaggccgcc accgaccgat
     2101 cctgttggaa aagtccgagc gcgcatctag cgaacacgaa aagcggcagg agcaatcagc
     2161 cgcacttgcc gaagtcgtgc tgggcggagg cctgaccttt aaccatcagg gcatgcctgg
     2221 ggcgcgcccc gacac
//
LOCUS       DASQWN010000108         3515 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_901862, whole genome shotgun sequence.
ACCESSION   DASQWN010000108 DASQWN010000000
VERSION     DASQWN010000108.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 3515)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3515)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3515
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_901862"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..728)
                     /locus_tag="VE686_02035"
     CDS             complement(<1..728)
                     /locus_tag="VE686_02035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018700577.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0043190 - ATP-binding cassette (ABC)
                     transporter complex [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycine betaine ABC transporter
                     substrate-binding protein"
                     /protein_id="HYY83263.1"
                     /translation="MPRFLMAAVLVAAAWLPASARAAECDVQRPVVLGGLDYDSAGFD
                     NAVAKLILTKGYGCKVDILPGTVLPLVNGLARGDVDVLMEVWTANPAEAWVKAEKEGK
                     VVRLGVNFADTREGWFVPRYVVEGPKAVAPDLKSVHDLARHKGVFADPEEPGKGRFYN
                     CPAGWQCELVNTKKLAAYGLTADYTNFRAGTGEALAAAVEGAVRRQRPILFYYWGPTW
                     LLGKYDFVMLSEPAFDAAVWDAMKA"
     gene            complement(991..1320)
                     /locus_tag="VE686_02040"
     CDS             complement(991..1320)
                     /locus_tag="VE686_02040"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY83264.1"
                     /translation="MREADGERAVMLASRRLLIVAARIAEKAWRAWRARELTVTYNLF
                     RSDDLDELYCAVPEHRAVPRFVKAGAWSFEGKIHEEGAPKAFDGPAAKVGVRFNGFHL
                     FQGVRFR"
     gene            1523..2389
                     /locus_tag="VE686_02045"
     CDS             1523..2389
                     /locus_tag="VE686_02045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018320657.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="fumarylacetoacetate hydrolase family protein"
                     /protein_id="HYY83265.1"
                     /translation="MRLLSFQKDQDVGFGAVKGDGVVDLSRRMGLRSLRALLESGTLA
                     DAAAIVARESADFPLAGIRFLPPIPDPDKIICVGLNYRDHVAETGRTVTEKPTLFSRF
                     AASQVGHGAAMLKPAFSDKLDFEGEVAIVIGTAGRHIREEDALRHVAGYSCYNDGSVR
                     DWQYHTSQFLPGKNFVATGGFGPWLVTSDEIPDPTVLTLTTRLNGTVVQRATVDMMIT
                     SIPAQIAYISTFTPLVPGDVIVTGTPGGVGARRDPPLFLKDGDVVEVEVDAVGILRNP
                     IGTDASTRAPAA"
     gene            2523..3299
                     /locus_tag="VE686_02050"
     CDS             2523..3299
                     /locus_tag="VE686_02050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012650308.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HYY83266.1"
                     /translation="MDLALDGKTVLVTGGSKGIGLACARLFVSEGARVAITSRSQENL
                     DNASAALSGAIGIAADLTDPDQALRMVDAVERELGPLDVLVNCAGAARRTPADELTPS
                     LWKAAMDAKYFTYINVIDPVVKRMASRGAGVIVNVIGAGGKVASPIHLAGGAANAALM
                     LATAGLGNAYAGRGVRVVGVNPGLTDTARVAEGMLADARAGGITEEEARRRSIARLPL
                     GRMAEPEEVANAVLFLASSKASYVTAVTLGMDGGQVPVVV"
BASE COUNT          554 a         1236 c         1195 g          530 t
ORIGIN      
        1 gccttcatgg cgtcccagac cgccgcgtcg aaggcgggct cggagagcat gacgaagtcg
       61 tacttgccca gcagccacgt cggtccccag tagtagaaca ggatcggccg ctggcgccgc
      121 accgcaccct cgacggcggc cgcgagcgcc tcaccggtgc cggccctgaa gttcgtgtag
      181 tcggcggtaa ggccgtaggc ggcaagcttc ttcgtattga cgagctcgca ttgccagccg
      241 gccgggcagt tgtagaaccg ccccttgccg ggctcctcgg ggtccgcaaa cacgcccttg
      301 tggcgggcga ggtcgtggac cgacttcagg tcgggcgcca cggccttcgg tccctcgacc
      361 acgtagcgcg gcacgaacca gccctcgcgc gtgtcggcga agttgacgcc gaggcgcacg
      421 accttgccct ccttctcggc cttgacccag gcctcggccg ggttcgccgt ccacacctcc
      481 atgagcacgt ccacgtcgcc gcgggcgagc ccgttgacga ggggcagcac ggtcccgggc
      541 aggatgtcga ccttgcagcc gtagcccttg gtaaggatca gcttggccac ggcgttgtcg
      601 aagccggcgc tgtcgtagtc gagaccgccc agcacgaccg ggcgctgcac gtcgcattcg
      661 gcggctcgcg ccgatgcagg tagccaggcc gcagcgacga ggacggcggc catcaggaac
      721 cggggcatct ctcttctcct tcaccgaccg gtgctgtcgc gctcctagat cggcatagcc
      781 cgggccccga gtccaccggg caacgagagg gtgcgaggct cagcgggccg gtgcagggcg
      841 tccccagcga tgcgaccgct atcccggtgc ggcccgatca acacaccggc atccgcgacc
      901 acgcaagccc cgtgcgcgag ccgcggctac gggcagcgaa acggcggcag ggctcgacgg
      961 aagcctctgg cggcgcccgt tacgtcccgc tcagcggaac cggacgccct ggaacaggtg
     1021 gaagccgttg aagcgcacac cgaccttcgc ggccggcccg tcgaaggcct tcggcgcacc
     1081 ctcctcgtgg atcttcccct cgaacgacca cgcgcctgct ttcacgaacc gcgggacggc
     1141 gcggtgttcc ggaaccgcgc agtagagctc gtccaggtca tcggaacgga acaggttgta
     1201 tgtcaccgtc agctccctcg cgcgccatgc tctccaggcc ttctcggcga ttcgtgcggc
     1261 gacaatgagc aggcggcgtg acgcgagcat gacggcacgc tcgccatcgg cttcccgcaa
     1321 ccgtcgcctc gtgccgaagc gccggaggcc ggtccatccg cggctctccc cgcttcggcg
     1381 cgcccgttca ggcgcagcca tggatttacg cgcaatgcat gacgccccgg tgacacgcca
     1441 ccccggagga tatcgccgtc ttgtgtttgg gcggtcggcg tggtcactcc ggcggcagag
     1501 atcgtcgctg caggagccgg agatgcgcct actgtcattc cagaaggatc aggacgtcgg
     1561 cttcggggcc gtcaaaggcg acggggtcgt cgacctgtcg cggcggatgg gcttgcgcag
     1621 tctgcgcgcc ttgctcgaga gcggcacgct cgcggacgct gccgccatcg tcgcgcgcga
     1681 gagcgccgac ttccctctcg caggcatccg cttcctgcct ccgatcccgg acccggacaa
     1741 gatcatctgc gtcggcctga actaccgcga ccacgtcgcg gagaccgggc ggaccgttac
     1801 cgagaagccg acgctgttca gccgcttcgc agcgagccag gtcgggcacg gagccgcgat
     1861 gctgaagccg gcattctcgg acaagctcga cttcgagggc gaggtcgcga tcgtgatcgg
     1921 gacggccgga cgtcacatcc gcgaggaaga cgcgctgcgg cacgtcgcgg gctattcctg
     1981 ctacaacgac ggcagcgtcc gcgactggca gtaccacacg agccagttcc tgccgggcaa
     2041 gaacttcgtc gcgacgggcg gcttcggccc gtggctcgtc acgtcggacg agatccccga
     2101 cccgacggtg ctcaccctga cgacgaggct gaacggcacg gtcgttcagc gcgccacggt
     2161 cgacatgatg atcaccagca tcccggcgca gatcgcctac atctcgacct tcacgcctct
     2221 ggtcccgggt gacgtgatcg tgaccggcac gcccggcggt gtcggcgcgc gccgcgatcc
     2281 gcccctcttc ctgaaggacg gcgacgtcgt cgaggtcgag gtcgatgccg tcggaattct
     2341 gagaaacccc atcgggacgg atgcgagcac ccgcgcgccg gcggcgtgac gccgtctgcg
     2401 gtgttttgac cggacgatcc tgtactcgct cctcacctac gagaggatgc gcaacaagag
     2461 acgcctgaac gccgccgcgc cttgctctga ggacggggcg gcggggcgga atagggaagc
     2521 agatggacct ggctctcgac ggcaagactg tgctcgtcac gggcggatcg aaggggatcg
     2581 gcctcgcgtg cgcgcgcctc ttcgtctccg aaggcgcacg cgtggccatc acctcgcggt
     2641 cgcaggagaa cctcgacaac gcctcggcgg cgctcagcgg ggcgatcggg atcgctgccg
     2701 acctcacgga ccccgaccag gcgctcagga tggtcgacgc cgtggaacgc gagctcggac
     2761 cgctcgacgt tctcgtaaac tgcgccggtg ccgcacggcg tactcctgcc gacgagctga
     2821 caccgtcgct gtggaaggcc gcgatggatg cgaagtactt cacctacatc aacgtgatcg
     2881 acccggtggt gaagcggatg gcaagccgcg gcgccggcgt gatcgtcaac gtcatcgggg
     2941 ccggcggcaa ggtcgcctcg cccatccacc tcgccggagg cgccgcgaac gccgcgctga
     3001 tgcttgcgac ggcgggcctc ggcaacgcct atgcgggacg gggtgttcgc gtggtcggcg
     3061 tcaacccggg gctcaccgac accgcgcggg tggcggaagg gatgctggcc gacgcgcgag
     3121 ccggcggcat caccgaggag gaggcgcgcc gacgaagcat tgcgcgcctg ccgctcgggc
     3181 gcatggcgga gccggaggag gtcgccaacg ccgtcctgtt cctggcctct tccaaggcga
     3241 gctacgtcac cgccgtcacc ttgggcatgg acggcgggca agtcccggtg gttgtctgac
     3301 gaccgcaacg agggttggcg gagccggccc gccctcctcg gacctgtcga cggtcggctg
     3361 aagccttcct caacctttgt gtgcgcttgc tggcagacct gtcgcgagac accgatgcac
     3421 ggaccacgac caccatccct ccccgtccgc accatcgtcc tcgggggact ccccgtcgcc
     3481 gtcacggacc gggcgcaagc ggcggcgctg atggt
//
LOCUS       DASQWN010000109         2243 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1209096, whole genome shotgun sequence.
ACCESSION   DASQWN010000109 DASQWN010000000
VERSION     DASQWN010000109.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2243)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2243)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2243
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1209096"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..309
                     /locus_tag="VE686_02055"
     CDS             <1..309
                     /locus_tag="VE686_02055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013504352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY83267.1"
                     /translation="RVEPRIVEEPRVVRGPTPVPSFNCRYARSPVERAICADPVLAAK
                     DRRMALLYEQAGGSRHGPVDPTQYRWLAARNACGRARALEACIDRVYDARIAELSGVR
                     "
     gene            1083..1805
                     /locus_tag="VE686_02060"
     CDS             1083..1805
                     /locus_tag="VE686_02060"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY83268.1"
                     /translation="MRRFYRLTSRSLPARRPGRIPEMASNHWVTASVLIVAAAVACVT
                     PRLMLSGADGEAGDRLADASPVEPALMAPREQGAASVVVAEAGAPLFMPRGDPNAAEQ
                     FTQLAVQDGLPAAAPVPPQVARTPGSESDGEDRPQSRHSLAGLWAPNRAACDKHAAAR
                     TGWLPMKITDRGARAGQTTCSFRRLSGEGSAWTAVAECSGPRGHWVSNVRLGLEASSL
                     TWSSARGVRRYVRCDRFQVAAR"
BASE COUNT          343 a          779 c          784 g          337 t
ORIGIN      
        1 cgggtcgagc cgcgcatcgt cgaggagccg cgggtcgtgc gcggtccaac gcccgtcccg
       61 agcttcaact gccgctacgc ccgcagcccc gtcgaacggg cgatctgcgc cgatccggtc
      121 cttgccgcca aggaccgccg catggcgctg ctctacgagc aggccggggg ctcgcgccac
      181 ggccctgtcg acccgaccca gtaccgttgg cttgcggccc gcaacgcctg cggccgcgcg
      241 cgcgcactcg aggcgtgcat cgaccgcgtc tacgacgcgc gcatcgccga gctctccggg
      301 gtgcgctgaa gccctcgccc aagcgccttc agaccccgcg gcctggtggc ccggggggtt
      361 ggctggagag acttggcgcc gccccggtaa ggagaggggt ggcgcggggc gtcctggcct
      421 tgccggctcg gggaccgagc aaggcaagcg caaggaagca aggcaaggca agcgaccctc
      481 gagcgtgaag gccaggacgc cccgcgcgcg atgctcttga tccctggctc cgcgcttcgg
      541 ctcgtgatcg agcgttaagc gcctgtcgcg cagacctctc ctgaaccagg ttgccccggg
      601 gagaggacgg acggagcctc gccaaggccg gccggcacgc ttgcgatcgc gccggtgacg
      661 gggaggcgag gaccctggat gaccgccagt gccccggcgg gtccaagcac cgcatcagcc
      721 tttcggagcc tcgagccttg cggctttcag ctcctcggac caccgcccgg ctccgctccg
      781 ccctcgcggg aagagcctcg cctcggccgt gccaccccca accgaatgcc tccggaaggc
      841 acccctctac gggcgggaca agagacttta agcataaacc gagaacattg tcaagggcag
      901 gctcagccac tcgccgctgc cgtcgtcgcc aggcgccgcc gtccgctgcg agccatggcc
      961 gcatcggcgg ctcgctcgcc cgcacaaccg tcgagccagc cctctcgaat tgtccgcatg
     1021 ccgtgaatgc cttgatcaca gatcgtgctg cccactgcga gtaagcacgc tggaggaggc
     1081 acatgcgccg cttttaccgc ttaacctcgc gctcattgcc ggcgcggcgg cccggtcgaa
     1141 tccccgagat ggcgtcgaac cattgggtga cggcctccgt actgatcgtc gccgccgcgg
     1201 tggcgtgcgt cacgccacgc ctgatgttgt caggcgcgga cggcgaagct ggagaccgcc
     1261 ttgctgacgc gtcgcctgtc gagccagcgc tgatggcccc gagggaacag ggcgccgcga
     1321 gcgtcgtcgt cgccgaagcg ggtgcgccat tgttcatgcc gaggggagac ccgaacgctg
     1381 ccgagcaatt tacgcagctc gccgtgcaag acggcctccc ggcggcagca ccggtgccgc
     1441 cgcaggtggc gcggaccccg ggaagcgaaa gcgacggtga ggaccggccg cagtcgcggc
     1501 attcgctcgc ggggctctgg gcgccgaacc gcgccgcctg cgataagcac gcagcagccc
     1561 gcaccgggtg gcttccgatg aagatcaccg accggggcgc tcgagcaggc cagacaacct
     1621 gttcgttccg gcggttgagc ggcgagggaa gcgcatggac ggccgtcgcg gaatgctccg
     1681 gcccgcgcgg gcactgggtt tcgaacgtgc gcttgggcct cgaggcaagc tcgctgacgt
     1741 ggagcagcgc tcgcggcgtg cggcggtatg tgcgatgcga tcggtttcag gtcgctgcac
     1801 gctgactgga gttcacgcgc cgtgacgagc gggctccccc atgcaggttt cgcccgcgaa
     1861 atgccagaag ctgacctctc gggcggcgcg ccaggtcgac gcgtgtcgcg tctcggccag
     1921 ggccagcagc cggatcagct tatccccacg tccgcgactt tggacaggtt cgcatccgac
     1981 cttcggagtt ggtccgcaag cgcccggagt tcgccaacca ccacgaacgg agttcttgac
     2041 gggaactttg cccgggcgct tgaatttgca acgggcgctg gaggtggtct cgtgctgaat
     2101 ggacggcgcg tcttgttggt ggaagacgat ccgttggtgg tcgagacgat ccgcgacatg
     2161 gtggcagagg cgggcgggga ggtcgctgcc tcccctgcaa ccatggccga ggcacgtcgc
     2221 cttctccggg ccgaagcggt ctt
//
LOCUS       DASQWN010000110         2531 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_504816, whole genome shotgun sequence.
ACCESSION   DASQWN010000110 DASQWN010000000
VERSION     DASQWN010000110.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2531)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2531)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2531
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_504816"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            56..1399
                     /gene="glmM"
                     /locus_tag="VE686_02065"
     CDS             56..1399
                     /gene="glmM"
                     /locus_tag="VE686_02065"
                     /EC_number="5.4.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020094009.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008966 - phosphoglucosamine mutase
                     activity [Evidence IEA];
                     GO_process: GO:0009103 - lipopolysaccharide biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglucosamine mutase"
                     /protein_id="HYY83269.1"
                     /translation="MTRKYFGTDGIRGRANGVITPELALRVGQAAGLLFQRGDYRHRV
                     VIGKDTRLSGYMIESALQAGFTSVGMDVLLLGPMPTPAVAMLTRSMRCDLGVMISASH
                     NAYEDNGIKLFGPDGFKLSDDVEREIEALMGRDLGVRLSGAADLGRAKRIESVHARYI
                     EFAKRTLPRQLDLEGMRVVVDCANGAAYKVAPETLWELGAEVIAIGVEPDGFNINRDV
                     GSTAPAALTAKVRELRADIGIALDGDADRVLIVDEKGQSVDGDQLMAVVARSWRDDGR
                     LSQPGVVATIMSNLGLERYLAGLGLGLVRTAVGDRYVLEHMREHGYNLGGEQSGHIIL
                     SDYTTTGDGLIAALQLLAVVKRLDRPVSEVCHSFDPLPQILKNVRYGAGQPLQKDSVV
                     TMIEQARQRLGTAGRLVIRPSGTEPVIRVMGEGDDRELVAQVVDDVVGALTDVAA"
     gene            1553..2398
                     /locus_tag="VE686_02070"
     CDS             1553..2398
                     /locus_tag="VE686_02070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019195783.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane beta-barrel protein"
                     /protein_id="HYY83270.1"
                     /translation="MLRLKTITLAGLLAASALSASAADLVAPPQPQYAPVAAPVEDFG
                     GWYLRGDAGVSNYRNGKFSSPDLPPAQFYNQDFGAGSFAGIGIGYQFNSWLRADITGE
                     YRFSKGFKAFDRIDFDAGGGLRGTTNEITHGDYTAGVVMLNGYVDLGTWLGITPFVGA
                     GVGFAHHMLSGFSDQGITTIGGVATPGGGSIGNASKTSFAWALHAGLGYDVTPNFKVE
                     LAYRYMHLGDMRTGAINCFCGATYSPLRIKGLEAHEIKLGMRWLLNAPPAPIAMAEAP
                     LVRKY"
BASE COUNT          387 a          943 c          821 g          380 t
ORIGIN      
        1 acgacaaagg gcccggcagc cgtgccgcgg cgctgaacga gagctcggga cggccatgac
       61 gcgcaaatac ttcggaacgg acggcatccg cggccgggcg aacggcgtga tcacgcccga
      121 gctggcgctc cgggtcgggc aggcggccgg gctgctcttc cagcgcggcg actaccgcca
      181 ccgcgtcgtg atcggcaagg acacgcgcct ctcgggctac atgatcgaat cggcgctgca
      241 ggccggcttc acctcggtcg gcatggacgt gctcctgctc gggcccatgc cgacgcccgc
      301 cgtcgccatg ctgacgcgct ccatgcgctg cgacctcggg gtgatgatct cggcctcgca
      361 caacgcctac gaggacaacg gcatcaagct gttcgggccc gacggcttca agctctccga
      421 cgacgtcgag cgcgagatcg aggcgctcat gggccgcgac ctcggcgtgc gcctgtcggg
      481 cgccgccgac ctcggccggg ccaagcgcat cgagagcgtg cacgcgcgct acatcgagtt
      541 cgccaagcgc accctgccgc gccagctcga cctcgaaggc atgcgggtcg tcgtcgattg
      601 cgccaacggc gccgcctaca aggtcgcccc cgagaccctg tgggagctcg gcgccgaggt
      661 gatcgccatc ggcgtcgagc cggacggctt caacatcaac cgcgacgtcg gctcgacagc
      721 gcccgcggcc ctcaccgcca aggtgcgcga gctgcgcgcc gacatcggca tcgcgctcga
      781 cggcgacgcc gaccgcgtcc tcatcgtcga cgagaagggc cagtcggtcg acggcgacca
      841 gctcatggcc gtggtcgccc gctcctggcg cgacgacggg cgcctgtcgc agccgggcgt
      901 cgtcgcgacg atcatgtcga acctcggcct cgagcgctat ctcgccggcc tcggcctcgg
      961 cctcgtgcgc accgccgtcg gcgaccgcta cgtgctcgag cacatgcgcg agcacggcta
     1021 caacctcggc ggcgagcagt cgggccacat catcctgtcc gactacacga cgacgggcga
     1081 cggcctcatc gcggcgctgc agctgctcgc cgtggtcaag cgcctcgaca ggccggtgtc
     1141 ggaggtgtgc cactcgttcg acccgctgcc gcagatcctc aagaacgtgc gctacggcgc
     1201 cgggcagccg ctgcagaagg actcggtcgt caccatgatc gagcaggcgc gccagcggct
     1261 cggcacggcc ggccgcctgg tcatccgccc gtccggcacc gagccggtga tccgcgtcat
     1321 gggcgagggc gacgaccgcg aactcgtggc gcaggtcgtc gacgacgtcg tcggcgccct
     1381 caccgacgtc gccgcctgag ggcgcacgcc cctttttggc gcgccgcaat tctgccggca
     1441 ggcttaattc gtaggcttaa tctgccttta agtgtttcct gacaaccttc ccttgttggc
     1501 attttcgcgt cgggcacggg ctggcccacg ccttcaaagc aagggaccgc tcatgctcag
     1561 gctcaagacc atcaccctgg cgggcctcct ggccgcgtcg gcactctcgg cgtcggccgc
     1621 cgacctcgtg gctcccccgc agccccagta cgcgccggtt gcggcgcccg tcgaggactt
     1681 cggcggctgg tacctgcgcg gcgacgccgg cgtcagcaac taccgcaatg gcaagttctc
     1741 gagccccgac ctgcccccgg cgcagttcta caaccaggac ttcggcgcgg gctcgttcgc
     1801 gggcatcggc atcggctacc agttcaacag ctggctgcgc gccgacatca ccggcgagta
     1861 ccgcttctcg aagggcttca aggccttcga ccgcatcgac ttcgacgccg gcggcggact
     1921 gcgcggcacc accaacgaga tcacccacgg cgactacacc gcgggcgtgg tgatgctcaa
     1981 cggctacgtc gatctcggca cctggctcgg catcacgccg ttcgtcggcg ccggcgtcgg
     2041 cttcgcccac cacatgctgt cgggcttctc ggaccagggc atcaccacca tcggcggtgt
     2101 cgcgaccccg ggcggcggct ccatcggcaa cgcctcgaag acgagcttcg cctgggccct
     2161 ccacgccggt cttggctacg acgtgacccc gaacttcaag gtcgagctcg cctaccgcta
     2221 catgcacctc ggcgacatgc gcaccggcgc catcaactgc ttctgcggcg cgacctactc
     2281 gccgctgcgg atcaagggcc tcgaggcgca cgagatcaag ctcggcatgc gctggctgct
     2341 caacgccccg ccggcgccga tcgcgatggc cgaggcgccc ctcgtccgca agtactgatc
     2401 ggtccagacg agacactgcc ggacggcgcg gggcattgcc ccgcgccgtt cgcgtttgag
     2461 gcacggcgcg ctccgaaaaa gcgaggcgcc gcacggttaa aggttaggct taagcgccct
     2521 ttaacctctc c
//
LOCUS       DASQWN010000111         3793 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1209268, whole genome shotgun sequence.
ACCESSION   DASQWN010000111 DASQWN010000000
VERSION     DASQWN010000111.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 3793)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3793)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3793
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1209268"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..956)
                     /locus_tag="VE686_02075"
     CDS             complement(<1..956)
                     /locus_tag="VE686_02075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015951649.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016627 - oxidoreductase activity, acting
                     on the CH-CH group of donors [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase family protein"
                     /protein_id="HYY83271.1"
                     /translation="MPSYKAPVEDVRFLLNDVFQMERYNNLPGFADASTDVVDAILEE
                     GARLCEEVLAPLNLSGDQEGCTRLDDGRVVTPKGFKEAYEAYAQGGWMGLSVPPEFGG
                     QGLPYTLGVVMNEFASAANMAFSMYPGLTLGAVAALLEHGTQEQKATYVPKMVEGKWA
                     GTMNLTEPHCGTDLGLIKTKAVPNGDGSYAITGTKIFISAGEQDLTENIVHLVLARIE
                     GAPQGVKGISLFVVPKIAVNPDGSLAERNGVTCGSIEHKMGIHGNATCVMNYDGARGW
                     LVGAENKGLNAMFVMMNEARLAVGIQGLSQSEVAFQNAVAYA"
     gene            complement(1109..1537)
                     /locus_tag="VE686_02080"
     CDS             complement(1109..1537)
                     /locus_tag="VE686_02080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015931746.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MerR family transcriptional regulator"
                     /protein_id="HYY83272.1"
                     /translation="MTNDNDRETSSVTSSSRQTEAKAPKTYLIGDLAREFGVSLRTLR
                     FYESRGMLSPRRDGTARLYDERDRERLAAILDGKRLGFTLTEIRDMLEDKRRDGTKAK
                     LALSLPEIEDQIEHLEAQKAQIEDALRELRRQHERLRAAA"
     gene            1835..>3793
                     /locus_tag="VE686_02085"
     CDS             1835..>3793
                     /locus_tag="VE686_02085"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY83273.1"
                     /translation="MTRNQHLSLDRLDRETREIAREAARQAGMTLDEWVAALIAERSG
                     EALGAASKLDADIDAIRDRLAGRTRRKPRDVEELVAAASAESERRDREAAEKTAAALD
                     SVARWIERAESRLDETSRITTEHHERTSSILGEALEVMTRRLDDIERKVGEGQQPAMT
                     AALKAVEAVDRLEQQIAIAAAERDQAQNAHIESALKGFEERIAQIAQQVADNQPRPIA
                     RRGIDPADVVRSAVADIRSRQSELERAAPTIRPRRMETDRGDSRSQADILLSLKSDIA
                     GLAEQLGSLQSVGTGSAHLAVLRDEIGRVQDTIGALATRDEVAALERSLRDLTGQVSQ
                     ARGPGDVADISEPIATMQGEIARLAAALEQKVPDRLAREIEGLAQRLDATAGTGSDVD
                     VIAAMRDQLGELSGQLADLAEPRRIEKLATEVADLGSQVRDLAGRQLEAITEKLDTLI
                     ERGPPTDLDSVTRELERLSSRMEGALLANGRAEPIEPLLERLDRLSESLRDPPSSPAL
                     KPLEDMLRSLTDQLGNSERPGVGSESLDAVEKQIAALSSQLDRASGADPVLVGLERTM
                     SDLMAQVETMRGGAPEIGALQREVADLKARQGVSDQRMQETLAGLNTTIEKLAARLGA
                     PETSEQTAQRLAGAESLEAAIRNARTSEA"
BASE COUNT          625 a         1310 c         1294 g          564 t
ORIGIN      
        1 ttggcgtagg cgacggcatt ctggaatgcg acctcgcttt gcgagagccc ctggatgccg
       61 acggcgagcc gcgcttcgtt catcatcacg aacatggcat tgaggccctt gttctcggcc
      121 ccgacgagcc agccccgcgc gccgtcgtaa ttcatgacgc aggtcgcgtt gccgtggatc
      181 cccatcttgt gctcgatcga gccgcaggtg acgccgttgc gctcagccag ggagccgtcc
      241 gggttcacgg caatcttcgg cacgacgaag agcgagatgc ccttcacgcc ctgcggcgcg
      301 ccctcgatgc gcgcgagcac gaggtggacg atgttctcgg tcaggtcctg ctcgccggcc
      361 gagatgaaga tctttgtgcc cgtgatggcg taggagccgt ccccgttcgg aacggccttg
      421 gtcttgatga ggccgaggtc cgtaccgcag tgcggctcgg tcaggttcat ggtgcccgcc
      481 catttgccct cgaccatttt gggcacgtag gtcgccttct gctcctgcgt gccgtgctcg
      541 aggagcgccg cgacggcgcc gagcgtcagg ccggggtaca tggagaaggc catgttcgcc
      601 gccgaggcga actcgttcat gacgacgccg agggtatagg ggagtccctg gccgccgaac
      661 tcgggcggga ccgacaggcc catccagccg ccctgcgcgt aggcctcgta ggcctccttg
      721 aagcccttcg gggtgaccac gcggccatcg tcaaggcgcg tgcatccctc ctggtcgccg
      781 ctgaggttga gtggcgcgag gacctcctcg cacagcctgg cgccctcctc caggatcgca
      841 tcgaccacgt cggtcgaagc gtccgcgaac cccgggaggt tgttgtagcg ctccatctgg
      901 aacacgtcgt tcaggaggaa gcgcacatcc tccaccggcg ccttgtagct cggcatggtc
      961 gacctcccga aactccgcgc gagagcacgc ccgttggggc tcatcgccgc gatagttcac
     1021 atgtaaacca tttcggcgag gatgggaagt ggccgcacgc gcaaaatact gatggaggac
     1081 gtggccgagc gcctcggccg ccgcggcgtc aggccgcggc gcgcagccgc tcatgctggc
     1141 ggcgcaactc gcgcagggcg tcctcgatct gcgccttctg cgcctccaga tgctcgatct
     1201 ggtcctcgat ctcgggaagc gagagggcga gcttcgcctt ggtgccgtcg cgccgcttgt
     1261 cctcgagcat gtcccggatc tcggtcagcg tgaaaccgag ccgcttgccg tcgaggatcg
     1321 ccgcgagccg ctcgcgatca cgctcgtcgt agaggcgcgc cgtaccgtcg cggcggggcg
     1381 agagcatgcc gcggctctcg tagaagcgca gggtcctcag cgagacgccg aactcgcggg
     1441 cgagatcgcc aatcaggtag gtcttgggcg ccttggcttc ggtctggcga gaggaagagg
     1501 ttacggagga cgtttcgcgg tcgttatcgt tggtcatttc ggctttgtgt tcgctcgaca
     1561 aggatcgcgc aagacgcatg acgaacaggc aggtctgcgg cgaacgcggg gggtggaagc
     1621 tccgatatgg ccgaccggcg cgcgatccgc caggggtcgc tgtttctggc tgcgcgttaa
     1681 cccggtgttt accgtaacga caaatggtta accgacggcg agcaagcgcg atcggcacgt
     1741 gtcgaatcac tcgggggttg cgcccgcgcc gtcgggttcc ggcttggggg cacgccgggc
     1801 cttgcgccgt cgccctgctc cccgagtgcg atcgatgaca cgcaaccagc atctgagcct
     1861 cgaccggctt gaccgcgaga ctcgagagat cgcgcgcgaa gctgcccggc aggccggcat
     1921 gaccctcgac gagtgggtcg ccgctttgat cgcggaacgc agcggagaag ctctcggcgc
     1981 tgcctccaag ctcgacgccg acatcgacgc aatccgcgac aggctcgcgg gacgcacacg
     2041 tcgcaagcca cgggacgtcg aagagctcgt cgccgccgcg agcgccgaga gcgagcgccg
     2101 ggatcgcgag gcagccgaga agacggcggc ggcgctcgac agcgttgcgc gctggatcga
     2161 gcgcgccgaa agccgtctcg acgagacctc ccggatcacg accgagcatc acgagcgcac
     2221 cagcagcatc ctcggcgagg cgctcgaggt catgacccgc cgcctcgacg acatcgagcg
     2281 caaggtcggc gagggacagc agcccgcgat gacggcggcg ctgaaggccg tcgaggccgt
     2341 cgatcgcctc gagcagcaga tcgccattgc ggcggccgaa cgcgaccagg cccagaacgc
     2401 gcatatcgag agcgccttga agggcttcga ggagcgcatc gcgcagatcg cgcagcaggt
     2461 tgccgacaat cagccccgtc cgatcgcgcg ccgcggcatc gacccggccg acgtggtcag
     2521 gtcggccgtc gccgacatcc gttcgcgcca gagcgagctc gagcgcgctg ccccgaccat
     2581 ccgcccgcgg cggatggaga cggatcgcgg cgacagccgt tcccaggcgg acatcctcct
     2641 gtcgttgaag agcgacatcg ccggcctcgc ggagcaactc gggtcgctgc agtccgtcgg
     2701 caccggatcg gcccacctcg cagtcctgcg cgacgagatc ggccgcgtgc aggacacgat
     2761 cggcgcgctc gcaacccggg acgaggtcgc cgcactcgag cgatccttgc gcgatctgac
     2821 gggccaggtg tcgcaggcac gcggtcccgg cgacgtcgcc gacatcagcg agccgatcgc
     2881 caccatgcag ggcgagatcg cgcgtctcgc tgccgcgctc gagcagaagg tccccgaccg
     2941 cctcgcgcgc gagatcgaag ggctggctca acgtctcgac gcgaccgccg ggacgggctc
     3001 ggacgtcgac gtcatcgcgg ccatgcggga ccagctcggc gaattgtccg gccagctcgc
     3061 cgaccttgcg gagcctcgcc gcatcgagaa gctcgcgacg gaggtcgcgg atctcggcag
     3121 ccaggtgcgc gacctcgccg ggcgtcagct cgaagcaatc accgagaagc tcgacaccct
     3181 catcgagcgc ggcccgccga ccgacctcga cagcgtcacc cgggagctcg agcgcctctc
     3241 cagccgcatg gaaggcgcgc tcctggccaa cggccgggct gagcccattg agccgctgct
     3301 cgagcggctg gaccgcttga gcgaaagcct gcgcgacccg ccttcgagcc cggcgctgaa
     3361 gccgctcgag gacatgttgc gctcgctcac cgaccagctc gggaattccg aacggcccgg
     3421 cgtcggcagc gagtccctcg acgcggtcga gaagcagatc gcggccctgt cgtcgcagct
     3481 cgaccgagcc tccggcgccg atccggtgct cgtcggtctc gagcggacca tgtccgacct
     3541 catggcccag gtcgagacga tgcgaggggg cgctccggaa atcggagccc tgcagcgcga
     3601 ggtcgccgac ctcaaggcgc gccagggcgt ctccgaccag cgcatgcagg agaccctcgc
     3661 gggtctcaat acgacaatcg agaagctcgc agcgcgcctc ggagcccccg agacctctga
     3721 gcagaccgcc cagcgactcg ccggcgccga gagcctcgag gcggcgatcc gcaacgcccg
     3781 tacaagcgaa gcc
//
LOCUS       DASQWN010000112         2309 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_405804, whole genome shotgun sequence.
ACCESSION   DASQWN010000112 DASQWN010000000
VERSION     DASQWN010000112.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2309)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2309)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2309
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_405804"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(676..1569)
                     /locus_tag="VE686_02090"
     CDS             complement(676..1569)
                     /locus_tag="VE686_02090"
                     /inference="COORDINATES: protein motif:HMM:NF015637.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MYG1 family protein"
                     /protein_id="HYY83274.1"
                     /translation="MKAVTHDGSFHADDVFAYAVLRAAVPGIALERTRDANAVARADL
                     VFDVGGLFDQQTRRFDHHMRDRPLREDGTPYSSLGLLWREYGRTAVPAFLGGAEPDVV
                     EAVWRELDGSLVVEIDRTDNGIGVAGAGHLSSVIEAFNPVWDESGDQNEAFMAAADLA
                     AGILARQCRQVAASERAKSMVFAASRSADDARILVLDRKLPWESAVYDGGLTDALYVI
                     YPDEAHARWYCRSVSVAQNSFDQRLPLPERWAGLRDREFSQAAGIADGVFCHPSRFIC
                     AATSRASAIALAQRSIEAARR"
     gene            1800..2234
                     /locus_tag="VE686_02095"
     CDS             1800..2234
                     /locus_tag="VE686_02095"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY83275.1"
                     /translation="MDNLLLREFNAQMISKGRITFGDVKRLQRNILPDGICTRDDVEL
                     LLALDRVVARCDRAWGDYLVAAVTDFVVWGERPTGYVDADAGRWLNGLLLAGEPTRTA
                     LRIAREIEQEAHQAETLGSDAALAGVAERIGGADAPRAEALA"
BASE COUNT          358 a          803 c          812 g          336 t
ORIGIN      
        1 cacgctcacg cattggctgc tcaccatcgg ttcttgacaa tagtcctgca gtatgcttgt
       61 ttgtcgccgt cccgcccgca gaggggcacc tccggaggtg tctggtcgtg gggtggcatc
      121 gcgcgacgga gcgccggctc aaaaggccgg aacgagctcg ggtggtgggt cgaagtgagg
      181 cgccgcacgg cgaggcgctt cggtctgatg cggcgctgag cccgggacga cacagcccgg
      241 gagcactcag ggtcccccgc ctccccgtca ccggcgcgtt ccaggcgcgc cggccggcct
      301 tggcggaggc ctcgtccgtc ccatcctcag gaagggtggg tccgcgcgga gacgcgctta
      361 aggcccccac gcgagggccg aagcgcgagg ccagggatca aggcgccgcc gagcgcgggg
      421 tgtccgggtc aggttgcgct aggcacctgg cccctgggcc ctggccctgc catccgcggc
      481 gtcacacgct gcagatggat ccctgccgcc cgcggcttgg aacccgcgcg gcggatcctg
      541 cgccgcggac ccgtcccggc gcaccccgcg ctcgcccctc tcgtcttttt cgagggtcgc
      601 gccagaccga ccctcatgcc tcggacccgg agagggccgc gagaaggaga agccatgtct
      661 tcacctgctc agacactagc ggcgggcggc ctcgatcgag cgctgcgcca acgcgatggc
      721 cgaggcgcgc gaggtcgcgg cgcagatgaa gcggctcggg tggcagaaga cgccgtcggc
      781 gatgccggcg gcctgcgaga actcgcggtc gcgcagaccc gcccagcgct cgggaagcgg
      841 gagccgctgg tcgaacgagt tctgcgccac gctcaccgac cggcagtacc agcgcgcgtg
      901 cgcctcgtcg ggatagatga cgtagagggc atccgtcagg ccgccatcgt agacggccga
      961 ctcccagggc agcttgcggt cgagcaccag gatgcgcgcg tcatcggcgc tgcgcgacgc
     1021 cgcgaacacc atgctcttcg cgcgctccga cgcggcgacc tggcggcatt ggcgcgcgag
     1081 gatgccggcg gcgaggtcgg ccgccgccat gaaggcttcg ttctggtcgc ccgactcgtc
     1141 ccacacggga ttgaaggcct cgattacgga ggacaggtgc cccgcgcccg cgacgccgat
     1201 gccgttgtcg gtgcggtcga tctcgaccac caggctcccg tcgagttcgc gccacaccgc
     1261 ctccacgaca tcgggctcgg cgccgccgag gaacgccggg acggcggtac ggccgtactc
     1321 gcgccacagc agcccgaggg agctgtaggg cgttccatcc tcgcgcagcg ggcggtcgcg
     1381 catgtgatgg tcgaagcgcc gcgtctgctg gtcgaagagg ccgccgacgt cgaacacgag
     1441 gtcggcgcgc gccaccgcgt tggcgtcgcg tgtgcgctcg agggcgatgc cgggcacggc
     1501 agcccggagc accgcatagg cgaagacgtc gtcggcgtgg aacgagccat cgtgcgtgac
     1561 ggctttcatg cagcagtcct cctcgtcggc gcggccggcc gacgccttct aggctatcgc
     1621 ggttacgaag gcgcgtgcgg ccagcgtcaa cgccagctta atgcgacccg tcagagtcgt
     1681 ttaacctgaa caggcattta gaatgcaaat ttaccccccg ggaaggtgtg cagcgcagtc
     1741 tcatcgcacg acaggagcaa acaaccggca gacgacgaag ccggggaggc gtcaaacaga
     1801 tggacaacct tcttcttcgc gaattcaatg cccagatgat ctcgaagggc cgcattacct
     1861 tcggtgacgt gaagcgtctg cagcgcaaca tcctgccgga cggcatttgc acccgcgacg
     1921 acgtcgagct tctgctcgcc ctcgaccggg tggtcgcccg ctgcgaccgc gcctggggcg
     1981 attacctggt cgctgccgtc actgatttcg tggtctgggg cgagcgcccg acgggctacg
     2041 tggacgccga tgccggccgc tggctcaacg gcctcctgct cgccggggag ccgacccgga
     2101 ccgccctgcg tatcgcccgt gagatcgagc aggaggccca ccaggccgag acgctgggct
     2161 ccgatgcggc gcttgcgggc gtcgctgagc gcatcggcgg tgcggacgcg ccccgggccg
     2221 aggcgctcgc ctgagccgcc gagaacacgg gccggtccct ctcgacaagc cggcacgcgc
     2281 catgaatggt agcgctcaag cttcgcaat
//
LOCUS       DASQWN010000113         2611 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_207352, whole genome shotgun sequence.
ACCESSION   DASQWN010000113 DASQWN010000000
VERSION     DASQWN010000113.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2611)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2611)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2611
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_207352"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(135..1877)
                     /locus_tag="VE686_02100"
     CDS             complement(135..1877)
                     /locus_tag="VE686_02100"
                     /EC_number="6.3.5.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019400720.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003952 - NAD+ synthase
                     (glutamine-hydrolyzing) activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0009435 - NAD biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD+ synthase"
                     /protein_id="HYY83276.1"
                     /translation="MAQKTLKIALAQLNPTVGDVAGNAAKARTARAQAAALGADAVMF
                     PELYLSAYPPEDLVLKPAFQDACREACEALARETSDGGPAVLIGLPWLEDGLLYNAYA
                     LLDAGAIQAVRFKVDLPNYGVFDEKRVFEPGPLPGPITMRGVRVGIPICEDIWGPDPV
                     ECIAETGGEILLVPNGSPYRRGVTDERLNSAVARVTESGLPLVYLNQVGGQDELVFEG
                     ASFILSADGALLAQLPAFREVVALTEWQKDEEGWRCLDGPRAVIEEGDQADYAACVLG
                     LRDYVDKNRFPGVVLGLSGGIDSAICAAMAVDALGPARVHCIMLPYRYTSSESLSDAA
                     ACAEALGVRYDTLPIAEAVEGLEAALKPVFGGKPRDITEENIQSRARGTMLMSISNKF
                     GPMVVTTGNKSEMSVGYATLYGDMNGGFNPIKDLYKMEVYRLSGLRNRWKPEGALGPD
                     GVVIPENILSKAPSAELRPDQKDQDSLPPYPVLDDVLECLVEHEMRVSDIVGRGHDLE
                     TVKKVERLLYLAEYKRRQAAPGVKVTHKSFGRDRRYPIVNRFRDQGEIAYRRDEALYR
                     AIGKPRGGGDAIDF"
     gene            complement(2184..>2611)
                     /locus_tag="VE686_02105"
     CDS             complement(2184..>2611)
                     /locus_tag="VE686_02105"
                     /EC_number="2.5.1.54"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012319647.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003849 - 3-deoxy-7-phosphoheptulonate
                     synthase activity [Evidence IEA];
                     GO_process: GO:0009073 - aromatic amino acid family
                     biosynthetic process [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="3-deoxy-7-phosphoheptulonate synthase"
                     /protein_id="HYY83277.1"
                     /translation="CRFGVDKVFEHLPALVSAVKKEGRAVVWSCDPMHGNTIKAGSGF
                     KTRPFELIMGEVRNFFAVHQAEGTHAGGVHLEMTGKNVTECTGGARALTDADLHDRYH
                     TYCDPRLNAEQALEVAFETAALIKEERQGRERPRVEAAE"
BASE COUNT          388 a          881 c          894 g          448 t
ORIGIN      
        1 tccctaactc gaaaggcccg attgcatcgg gatcgtgcag ggaacggcaa ggatgacccg
       61 gcgttccggc cgaatcgcgc ggcgaatcgg cacgccacgg caggcgttta gcttggccgg
      121 ttcgacggct cagttcagaa atcgatggcg tcgccacccc cgcgcggctt gcctatggcg
      181 cgatagagcg cctcgtcgcg ccggtaggcg atctcgcctt ggtcgcggaa gcggttgacg
      241 atggggtagc gccggtcccg gccgaagctc ttgtgggtca ccttcacgcc cggcgcggcc
      301 tgccgacgct tgtactcggc gaggtagagg agccgctcca ccttcttcac ggtttcgaga
      361 tcgtggccgc gccccacgat gtccgagacg cgcatctcgt gctcgacgag gcactcgagg
      421 acgtcgtcga gcaccgggta cgggggcagc gagtcctggt ccttctggtc ggggcgcagt
      481 tccgcgctcg gggccttcga caggatgttc tccgggatga cgacgccgtc cgggccgaga
      541 gcgccttcgg gcttccagcg gttgcgcaac cccgagaggc ggtagacctc catcttgtag
      601 aggtccttga tcgggttgaa gccgccgttc atgtcgccgt agagggtcgc atagccgacg
      661 gacatctccg acttgttgcc ggtcgtgacc accatcggcc cgaacttgtt cgagatcgac
      721 atcagcatgg tgccgcgcgc ccggctctgg atgttctcct cggtgatgtc gcgcggcttg
      781 ccgccaaaga cgggcttcag ggccgcctcg aggccctcca cggcctcggc gatgggcagg
      841 gtgtcgtagc ggaccccgag agcctcggcg caggccgccg cgtcggacag ggactcgctc
      901 gaggtgtagc ggtacggcag catgatgcag tggacgcgcg cggggccgag cgcgtcgacc
      961 gccatggcgg cgcagatcgc cgagtcgatg ccgcccgaaa gcccaagcac cacgcccggg
     1021 aagcggttct tgtccacata gtcccgcaag ccgaggacac atgcggcgta gtcggcctgg
     1081 tcgccctcct cgatcacggc gcgcggcccg tcgaggcagc gccagccctc ctcgtccttt
     1141 tgccattccg tgagcgccac cacttcccgg aaggcaggaa gctgcgccag gagggcgcca
     1201 tcggcgctga ggatgaacga ggcgccctcg aacacgagtt cgtcctggcc gccgacctga
     1261 ttgaggtaga cgagcggcag gcccgactcg gtcacccgcg ccaccgccga gttcaagcgc
     1321 tcgtcggtga ccccgcggcg gtagggcgag ccgttcggca cgagcaggat ctcgcccccg
     1381 gtctcggcaa tgcattctac ggggtcggga ccccagatgt cctcgcaaat ggggatgccg
     1441 acgcggaccc cgcgcatggt gatggggccc ggaagggggc cgggctcgaa gacccgcttc
     1501 tcgtcgaaga cgccgtagtt cggcagatcg accttgaacc ggaccgcctg gatggcgccg
     1561 gcgtcgagca gggcgtatgc gttgtagagg aggccgtcct cgagccacgg caggccgatc
     1621 agcacggccg gcccgccatc ggaggtctcg cgcgccagcg cctcgcaggc ttcgcggcag
     1681 gcgtcctgga acgcgggctt gaggaccagg tcctccgggg gataggccga gagatagagc
     1741 tccgggaaca tcacggcgtc ggcgccgagg gcggcggcct gcgcacgggc cgtgcgggcc
     1801 ttggcggcgt tcccggcgac gtctccgacg gtcgggttca gttgcgcgag agcgatcttg
     1861 agggtcttct gagccatgcg gctggtgtat cccgcgctcc accgacgtgg caacgcgggc
     1921 ccccgcggga cggttcggcg ggccagagcg cgtgcgggaa ccggccacag gctttgccgt
     1981 tgttcactcg acaacggctg gaggttcaca tgcttcgtgg tggtcttctt tggctcatcg
     2041 gcattcccct gccgatcatc ctgctcctgt tcttcttcgg ctttctccac tgagggagac
     2101 aaccggatca acttggcacc ggccgcaatc tagcggcgtg gccttgcgcg aagggacggc
     2161 tgtcggccgt ccctttgccg tttctactcg gccgcttcca cccgcggccg ctcgcggccc
     2221 tggcgctctt ccttgatgag cgcggccgtc tcgaatgcca cttcgagggc ctgctcggcg
     2281 ttgaggcgcg ggtcgcaata ggtgtgatag cggtcgtgca gatcggcatc ggtgagcgcc
     2341 cgcgcgcccc ccgtgcactc ggtcacgttc ttgcccgtca tctcgagatg cacgccgccg
     2401 gcgtgcgtcc cctccgcctg atgcaccgcg aagaagttgc gcacctcgcc catgatcagc
     2461 tcgaaaggcc gggtcttgaa gccggagccg gccttgatgg tgttgccgtg catcgggtcg
     2521 cacgaccaaa ccaccgccct gccctccttc ttcaccgcac tcacgagggc cggcaggtgc
     2581 tcgaaaacct tgtcgacccc gaacctgcag a
//
LOCUS       DASQWN010000114         2814 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1109800, whole genome shotgun sequence.
ACCESSION   DASQWN010000114 DASQWN010000000
VERSION     DASQWN010000114.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2814)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2814)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2814
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1109800"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..352
                     /locus_tag="VE686_02110"
     CDS             <1..352
                     /locus_tag="VE686_02110"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY83278.1"
                     /translation="KPKQSDTERGLATKAVALLLQDSTLRPGDVVMFPEGPKVFTGSS
                     GRHNRADFQDLERSKAVPKDLRKAVLALTRPSASPAAEARRRVADKQGGVLLGTAQQA
                     SADVRVVYPSAFRR"
     gene            complement(370..618)
                     /locus_tag="VE686_02115"
     CDS             complement(370..618)
                     /locus_tag="VE686_02115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012335947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6489 family protein"
                     /protein_id="HYY83279.1"
                     /translation="MKVNVEIDCTPAEARQFLGLPNVEPMQAAVMEQFQKKMLAEMDR
                     ISPETIMGTWLSLLPQGAEQMQKMFTNMFTQGFSRPKE"
     gene            complement(663..1319)
                     /locus_tag="VE686_02120"
     CDS             complement(663..1319)
                     /locus_tag="VE686_02120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012631428.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HYY83280.1"
                     /translation="MITVVGGTKGGTGKSTVATNLAVMHAAAGSDVLLVDADEQGTST
                     NFTAMRNQTRPEGAGYTCVALTGKAVMTELRRLAPKYQEIVVDVGGANAATQRGALSV
                     CDAYLVPFAPRSFDVWALERVADLVEEGRAVNPDLRAFAFLNRADARGGDNAAAAEII
                     RDQSVLEFLPLALGNRKSYARAATSGLSVVELRPVDQKAVQEIESLFAVLGRPKRKGR
                     "
     gene            1453..2373
                     /locus_tag="VE686_02125"
     CDS             1453..2373
                     /locus_tag="VE686_02125"
                     /EC_number="4.1.3.3"
                     /EC_number="4.2.1.41"
                     /EC_number="4.3.3.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018269081.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009436 - glyoxylate catabolic process
                     [Evidence IEA];
                     GO_process: GO:0071704 - organic substance metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrodipicolinate synthase family protein"
                     /protein_id="HYY83281.1"
                     /translation="MAEPRYRGVFPVAPTIFHDNGDLDLEGQRRCIDFLIDAGSNGIC
                     ILANYSEQFALADEEREVLMRAVLEHVAGRVPVIVTTTHFSSRICAERSRRAEAAGAA
                     MVMVMPPYHGATIRVGEEQVAAFLRALSDGIGIPIMIQDAPVSGVALSAPFLARLARE
                     TENVSYFKIEVPGAAAKLREMIRLGGDAVEGPWDGEESITLLPDLDAGATGTMPSGAY
                     PDLLRPIVDAHAAGRRHEAVHAYERLLPLINYENRQGGLIACKVLMKEGGVIASEAVR
                     HPFPPLHPATRAGLLDIARRLDPLVLRWAR"
BASE COUNT          430 a          984 c          946 g          454 t
ORIGIN      
        1 caaaccgaag cagtcggaca cggagcgcgg cctcgcgaca aaggccgtgg cgctcctgtt
       61 gcaggattcc acgctccgcc ccggcgacgt ggtcatgttc ccggagggcc cgaaggtttt
      121 caccgggagc tcgggccggc ataaccgcgc cgacttccag gacctcgagc ggtcgaaggc
      181 ggtgcccaag gacctgcgca aagcggtgct ggccctgacc cgtccgagcg cgagcccggc
      241 ggccgaagcc cgccgccgcg tcgccgacaa gcagggcggc gtcttgctgg ggactgcgca
      301 gcaggcgagt gccgacgtgc gggttgtcta tccgtcggcc ttccggcgct gaggcagggg
      361 ccgtcggcgt cattccttcg gacgactgaa accctgcgtg aacatgttgg tgaacatctt
      421 ctgcatctgc tcggctccct gagggagaag cgacagccag gtacccatga tggtctcggg
      481 cgagatgcgg tccatctcgg cgagcatctt cttctggaac tgctccatca cggcggcctg
      541 catgggctcg acgttgggca ggccaaggaa ctgccgggct tcagccggcg tgcagtcgat
      601 ctcgacgttg accttcatgg ctgccgctcc tctttctctc gcgtcggcgg agccggtccg
      661 cgtcaacgtc ccttacgctt gggccgcccg aggacggcga acaagctctc gatctcctgc
      721 acggccttct ggtccaccgg ccgcagctcc acgaccgaca gcccgctcgt cgccgcgcgg
      781 gcgtagctct tccggttgcc gagagctagg ggcaggaact cgaggaccga ctggtcgcgg
      841 atgatctcgg ccgccgcagc gttgtcgccg ccgcgtgcat cggcccggtt gagaaacgcg
      901 aaggcgcgca ggtccggatt cacggcgcgg ccttcctcga ccaggtcggc cacgcgctcg
      961 agtgcccaca cgtcgaagga gcgcggcgcg aacggcacga ggtaggcgtc acagaccgag
     1021 agggcgccgc gctgggtcgc cgcgttagcg ccgcccacgt cgaccacgat ctcctggtac
     1081 ttgggagcaa ggcggcgcaa ctccgtcatc acagccttgc cggtgagggc cacgcaggtg
     1141 tagccggcgc cctcaggccg ggtctggttg cgcatggcgg tgaaattggt cgaggtgccc
     1201 tgctcgtcgg catcgacgag gagcacgtcc gatccggccg ccgcgtgcat gacggcgagg
     1261 ttcgtcgcga ccgtcgactt gcccgtcccg cccttcgttc cgccgaccac cgtgatcatg
     1321 tcgacctctc gctgcagacg tatagcgcgt gccgcagggt taggaagccc gcgcggcggc
     1381 tcgcgacgac gctcgcgcgg gctgatacaa gtcgcgtgcc gggcggtccg gcggccaaag
     1441 ggtgcaacga cgatggcaga accacgctac cggggtgtct tccccgtcgc gccgacgatc
     1501 ttccacgaca acggcgatct cgacctcgaa ggccagcgcc gctgcatcga tttcctgatc
     1561 gacgccggct cgaacggcat ctgcatcctc gccaactact ccgagcagtt cgccctcgcg
     1621 gacgaggagc gcgaggtgct catgcgcgca gtgctcgagc atgtggcagg ccgggtgcct
     1681 gtcatcgtca ccacgacgca cttcagctcg cgcatctgtg ccgagcgcag ccgccgcgcc
     1741 gaggccgccg gcgccgccat ggtgatggtg atgccgccct accacggtgc cacgatccgc
     1801 gtcggcgagg agcaggtcgc ggccttcctg cgcgcgctct cggatggcat cggcattccc
     1861 atcatgatcc aggacgcccc ggtgagcggg gtcgcgctct cggcgccgtt cctcgcccgg
     1921 ctggcgcgcg agacagagaa cgtttcgtat ttcaagatcg aggtgcccgg ggcggccgcg
     1981 aagctgcgag agatgatccg gctcggtggc gacgccgtcg agggcccctg ggacggcgag
     2041 gaatcgatca cgctcctgcc cgacctcgat gccggggcga ccggcaccat gcccagcggc
     2101 gcgtatccgg acctcctgcg cccgatcgtc gacgcgcatg ccgccggacg ccgccacgag
     2161 gccgtgcacg cctacgagcg cctgctcccg ctgattaact acgagaaccg gcagggtgga
     2221 ctcatcgcct gcaaggtcct gatgaaggaa ggcggcgtga tcgcctcgga ggccgtccgg
     2281 caccccttcc cgccgcttca tccggccacc cgcgccggcc tcctcgacat cgctcgaagg
     2341 ctcgacccgc tggtcctgcg ctgggcgcgg tgagccccag ggccgagcga ggccatcagg
     2401 cgtccagacg tgcctcattg gcctcgcggc cttcttggcc cgagttctcg agagaaaggt
     2461 cgaggggctg cgcggagcgc gacgggcccg atgtttttta agggcccatc ggccccgcgc
     2521 acggtgtttt taggtcagcc gctgaggcct atggcgcctc gggagaggcc aggtcgctct
     2581 ctcggctagg agagaggccc gcccgtccgt gtggaccgcg tgttcctcag ccgaccctcg
     2641 cgaacgggct tgcgttcccg cagacgagca ccgatcccat cccacgtcac gacgcctcgc
     2701 gagcgcgccc ctcgggcgga cgggacgagg tggacaatat ataggcatat cgtacttgtc
     2761 aagccatata ttctctgcaa cctccagaac cgcgcttcga ccgcggctga ccgt
//
LOCUS       DASQWN010000115         4435 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1308654, whole genome shotgun sequence.
ACCESSION   DASQWN010000115 DASQWN010000000
VERSION     DASQWN010000115.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 4435)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4435)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4435
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1308654"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(176..832)
                     /locus_tag="VE686_02130"
     CDS             complement(176..832)
                     /locus_tag="VE686_02130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018458682.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate/glutamate racemase family protein"
                     /protein_id="HYY83282.1"
                     /translation="MTRRRIVVVNPNSNEAVTRGLDEALRPLAFAEGPEIVCTTLAEG
                     PYGIETQADVESVAMPLRRFVESDNGADAFIIACYSDPGLHVCREGTDRPVFGIAESG
                     VLTALARAETFGVIAIKQRSIRRHVRYLRQMGLTERLAGERPLEMSVAETASGEGTLD
                     RLIAVGRELRDEDGAGAIVMGCAGMARHRRALEEALGVPIIDPTQAAVAMALGAVCVA
                     "
     gene            910..2382
                     /gene="hydA"
                     /locus_tag="VE686_02135"
     CDS             910..2382
                     /gene="hydA"
                     /locus_tag="VE686_02135"
                     /EC_number="3.5.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011086117.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004157 - dihydropyrimidinase activity
                     [Evidence IEA];
                     GO_process: GO:0008152 - metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydropyrimidinase"
                     /protein_id="HYY83283.1"
                     /translation="MANGTYDIVIRGGTVATASDSFQADVAIAGETIAAIGRGLGPGR
                     REIDASGKLVLPGGVDSHCHIEQLSAAGIMNADTWETATASAAYGGTTTVISFAAQHV
                     GMNLADVVADYAALARKGAVVDYCFHMIVADPTEATLKEHLPALIREGHATIKVFMTY
                     DRLRVDDEQLLDVLLTARENRALVCVHAENHGMIAWMGKRLVERGYTAPKFHAMSHPR
                     VSEAEAFNRLIAMAALVDQPIMIFHVSTAEGAAVIRRARGEGLKVFAETCPQYLFMTA
                     QDLDRPGLEGAKWMCSPPARTEGDQEALWRALALGDLQTVSSDHAPYAYDETGKLRAG
                     PNANFKQVANGMPGLETRLPVLFDAMVSKGGMGVEKFVELTATAPAKIYNLHPKKGSI
                     AVGADADVAIWDPDKAVTLSDEGVHDLTRYTPYAGRTVQGWPVTVLRRGEVIVEDGSL
                     RAPAGSGRFLPRTGGAAAEPLGRLEAEMDPARNFGATLID"
     gene            complement(2387..3247)
                     /locus_tag="VE686_02140"
     CDS             complement(2387..3247)
                     /locus_tag="VE686_02140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006020978.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isocitrate lyase/phosphoenolpyruvate mutase
                     family protein"
                     /protein_id="HYY83284.1"
                     /translation="MRWSDRRKRFRALLAGDGCIHPASVFDPLSARIAEDLGFEAGMF
                     AGSVASLTVLGAPDVVVLTLSEFAEQAQRICRAGELPVMVDADHGYGNALSVARTIEE
                     LETVGIAAATIEDTALPQPYGAAAPQLTSVEEGAGKMRAALAARRDPDFVVVGRTSAV
                     SISGLDDAIARAKAYEKTGVDALFFTGVQAHEQLDAIAAAVTLPIILGNSPAEWSAQD
                     LAPKGVRIALRGHQPIAAAVQAIYDTMKALRDGTPPSALKGLPAPALMDRVTRAGAYK
                     TAQDDFLGLR"
     gene            complement(3263..4354)
                     /locus_tag="VE686_02145"
     CDS             complement(3263..4354)
                     /locus_tag="VE686_02145"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018642272.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-hydroxy acid oxidase"
                     /protein_id="HYY83285.1"
                     /translation="MSETDQPFLTLHEIVRAAYDRTERSIWDYIVGATETETTARRNR
                     HALDRVAFRPRVLRDVSKIDTSGQFFARPSRLPIALAPVGGLESIGRDGEILVARAAS
                     EFGVPFFLSSVTKVSMEDVAAAAPSGSKVFQLYVRGDAASTDDYVRRARDSGYDAFCL
                     TVDTAIYSRRERDIARRFVKPWRERAGGMDFQAALSWSEVRRLKDKHDVRLILKGIAT
                     AEDAEVACQHGVESIYVSNHGGRQLDHGRGTLDILPEIVAAVAGRAKIIVDGGFCRGT
                     DIVKAIALGADTVGIGRLYCYGLAAAGTEGVRRVLELLEAEVFACLGLLGVNAFEELD
                     RSYVCPAEAVTPPHVLSAFPLISLPVEQY"
BASE COUNT          678 a         1517 c         1632 g          608 t
ORIGIN      
        1 tcggcgaggc gagcctgcgc gggggatgcg cccgcggcga ggcccagcga caaggcaagc
       61 agcgcggcgg cggaagcggt gcggatcatc ggatgaggtc tccccaggcc ctatcaacgg
      121 cgctggggga ttcccgttcg agcttggccg taaaactacc ccgagcgggg gaggctcagg
      181 cgacgcagac ggcgccaagc gccatggcga ccgctgcctg cgtgggatcg attatcggaa
      241 cgcccagggc ctcctcgagg gcgcggcggt ggcgggccat gccggcgcag cccatgacga
      301 tggcgccggc gccatcctcg tcgcgaagct cccggcccac ggcgatgagg cggtcgaggg
      361 tgccctcgcc cgacgcggtc tcggccaccg acatctcgag cgggcgctcg ccggcaagcc
      421 gctcggtgag gcccatctgc cgcaggtagc gcacgtggcg gcggatggag cgctgcttga
      481 tggcgatgac gccgaaggtc tcggcccggg cgagcgcggt caggacgccc gattcggcga
      541 tgccgaacac cggccggtcg gtgccctcgc ggcacacgtg cagcccgggg tccgagtagc
      601 aggcgatgat gaaggcatcg gccccgttgt cgctctcgac gaaccggcgc aggggcatcg
      661 cgacgctctc gacatcggct tgcgtctcaa tgccgtaggg gccctcggca agggtcgtgc
      721 agacgatctc cggaccctcg gcgaaggcga gggggcgcaa cgcctcgtcg agaccgcggg
      781 tgacggcctc gttggagttc gggttgacga cgacgatgcg gcggcgggtc atggcagggc
      841 tccgatcgga gccattgaaa cggccccgcg aacgttgtcc agtgcgccgg gcaacggcgg
      901 gcaggaagca tggcaaacgg cacctacgac atcgtcatcc gcggcggcac ggtcgcgacc
      961 gcgagcgaca gcttccaggc cgacgtcgcc atcgcgggcg agaccatcgc ggcgatcggg
     1021 cgaggcctcg ggccgggcag gcgcgagatc gacgcgagcg gcaagctcgt gctgccgggc
     1081 ggcgtcgaca gccactgcca catcgagcag ctctcggccg ccggcatcat gaacgccgac
     1141 acctgggaga ccgcgacggc gtccgccgcc tacggcggca ccacgacggt gatctcgttc
     1201 gccgcccagc acgtcggcat gaacctcgcc gacgtggtgg ccgactacgc cgcgctcgcg
     1261 cgcaagggcg cggtggtcga ctactgcttc cacatgatcg tcgccgaccc gaccgaggcg
     1321 accctgaagg agcacctgcc ggcgctgatc cgcgaggggc acgccaccat caaggtcttc
     1381 atgacctacg accgtctgcg ggtcgacgac gagcagctcc tcgacgtgct gctcacggcg
     1441 cgggagaacc gcgcgctggt gtgcgtgcac gccgagaacc acggcatgat cgcctggatg
     1501 ggcaagcgcc tcgtcgagcg cggctacacg gccccgaaat tccacgccat gagccacccg
     1561 cgcgtctccg aagccgaggc cttcaaccgg ctgatcgcca tggcggcgct cgtcgaccag
     1621 ccgatcatga tcttccatgt ctcgacggcc gagggcgcgg cggtgatccg ccgggcgcgc
     1681 ggggaggggc tcaaggtctt cgccgagacc tgcccgcagt acctcttcat gacggcgcag
     1741 gacctcgacc gaccggggct cgaaggcgcg aagtggatgt gctcgccgcc ggcgcggacg
     1801 gaaggcgacc aggaggccct gtggcgggcg ctggccctcg gcgacctcca gaccgtctcg
     1861 tccgaccacg cgccttacgc ctatgacgag accggcaagc tgcgcgccgg gccgaacgcg
     1921 aacttcaagc aggtggcgaa cggcatgccg ggactcgaga cgcggctgcc ggtgctgttc
     1981 gacgccatgg tgtcgaaggg cggcatgggc gtggagaagt tcgtcgagct caccgccacg
     2041 gcgccggcaa agatctacaa cctgcatccg aagaagggct cgatcgccgt cggcgccgac
     2101 gccgacgtgg cgatctggga tcccgacaag gcggtgacgc tctcggacga gggcgtgcac
     2161 gacctcacgc gctacacgcc ctacgcgggt cgcaccgtgc agggctggcc cgtcaccgtg
     2221 ctgcggcgcg gcgaggtgat cgtggaggac gggtccttac gggcacctgc ggggtcgggc
     2281 cgcttcctgc cgcgcacggg aggcgccgcc gccgagccgc tcgggcgcct cgaggccgag
     2341 atggatcccg cgcggaactt cggcgcgacg ctcatcgact gaaacttcag cgcaggccca
     2401 gaaagtcgtc ctgcgccgtc ttgtaggcgc ccgcgcgcgt cacacgatcc atcagggccg
     2461 gggcgggcag gcccttcagc gccgatggcg gcgtaccgtc gcgcagggcc ttcatggtgt
     2521 cgtagatcgc ctggacggcc gccgcgatgg gttggtggcc gcgcagtgca atgcgcacgc
     2581 ccttgggcgc gaggtcctgc gcgctccact cggccggaga gttgcccagg atgatcggca
     2641 gcgtcacggc cgccgcgatg gcatcgagct gctcgtgcgc ctgcacgccg gtgaagaaca
     2701 gggcgtccac cccggtcttc tcgtaggcct tggcgcgcgc gatagcgtca tcgaggcccg
     2761 agatggagac ggcgctcgtg cgcccgacga ccacgaaatc ggggtcgcgc cgggcggcga
     2821 gcgcagcccg catcttgccc gcgccttcct ccaccgaggt cagttgaggg gccgcggcgc
     2881 cgtagggctg cggcagagcc gtgtcctcga tggtggcggc tgctatgccc accgtctcga
     2941 gctcctcgat ggtacgcgcc acgctgagcg cattgccgta gccgtggtcg gcgtcgacca
     3001 tgacgggcag ctcgccggcg cggcagatgc gttgcgcctg ctcggcgaat tccgagagcg
     3061 tcagcaccac cacgtcgggc gcgccgagca ccgtgaggga ggcgacggag cccgcgaaca
     3121 tgccggcctc gaagccgagg tcctcggcga tccgggcgga cagcggatcg aacacggagg
     3181 ccgggtggat gcagccgtct ccggcgagga gcgcgcgaaa gcgcttgcgg cggtcgctcc
     3241 atctcatggc gcgcgtgtcc ttttagtatt gctcgacggg gaggctgatg agcgggaagg
     3301 cgctcagcac gtgcggcggc gtcaccgcct cggcggggca gacgtagctg cgatcaagct
     3361 cctcgaaggc gttgacgccg aggagcccga ggcaggcgaa gacctccgcc tcgaggagct
     3421 cgagcacgcg ccgaacgccc tcggtcccgg cggccgcgag gccgtagcag tagaggcggc
     3481 cgatgccgac cgtgtcggcc ccgagcgcga tcgccttgac gatgtcggtt ccccggcaga
     3541 agccgccgtc cacgatgatc ttggcccgcc ccgcgacggc cgcgacgatc tccggaagga
     3601 tgtcgagggt gccgcggccg tggtcgagct ggcgcccgcc gtggttcgac acgtagatcg
     3661 actcgacccc gtgctggcac gccacctcgg cgtcctcggc cgtcgcgatg cctttcagga
     3721 tgagccggac gtcgtgctta tccttgaggc ggcggacctc gctccagctg agcgcggcct
     3781 ggaaatccat gccgcccgcg cgctcgcgcc acggcttgac gaagcgacgg gcgatgtcgc
     3841 gctcgcggcg gctgtagatg gcggtgtcga ccgtgaggca gaaggcgtcg tagccgctgt
     3901 cgcgggcacg gcgcacgtag tcgtccgtgg aagcggcgtc accccgcacg tagagctgga
     3961 acaccttgct gccggagggc gccgcggcgg cgacgtcctc catgctgacc ttcgtcacgg
     4021 agctgaggaa gaacggcacg ccgaattccg acgccgcccg cgccaccaga atctcgccgt
     4081 cgcggccgat cgattcgagt ccgccgacgg gagcgagcgc gatcggaagc ctgctcggcc
     4141 gggcgaagaa ctgcccggag gtgtcgatct tcgacacgtc gcgcaggacg cgcgggcgga
     4201 acgccacgcg gtcgagggca tggcggttgc gccgcgccgt ggtctcggtc tccgtcgccc
     4261 cgacgatgta gtcccagatg ctgcgctcgg tccggtcgta ggcggcgcgg acgatctcgt
     4321 gcagcgtgag gaacggctgg tcggtctcgc tcacttcggg tcgctctccg ggggaaacgc
     4381 ttcggctccg gcaccgccgc cgaggtgaag acgtgcgccg gccggaaggg gcggg
//
LOCUS       DASQWN010000116         3723 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_802831, whole genome shotgun sequence.
ACCESSION   DASQWN010000116 DASQWN010000000
VERSION     DASQWN010000116.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 3723)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3723)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3723
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_802831"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1373)
                     /locus_tag="VE686_02150"
     CDS             complement(<1..1373)
                     /locus_tag="VE686_02150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002714161.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TRAP transporter fused permease subunit"
                     /protein_id="HYY83286.1"
                     /translation="MVSLFRYPIGKVDLSHAGLIRLLAGSIAVAMALYHMWVIVTGTP
                     EAIIFRGTHLLFALALTFLIFRRTAAAADGAPSALDYLLLALALAPTAYLFWNYDYVV
                     NRIYYIDDLTTTDMVMAVLLVVLVLEATRRLIGLALPITAVVFLVYGLLVARVEPMRL
                     LDQLFMTTEGIFGAPLGVSAAYVMIFVLFGSFMERTGTGQLFMDFALSLTGHTAGGPG
                     KVSVVSSSLFGTISGSAVANVMVDGPISIPLMKRTGFKPHFAAGVEAVASTGGQIMPP
                     IMGAAAFVMAEFLQVSYGQVALWALVPAVLYYVACFGAVHFEAKRHGIMGVPRSELPS
                     LRLTLRERGHLFLPVLTILVIMYSGFSAPLAALAGTLACFPVALLRKSTRVNVTIANI
                     VDAMIDGAKNTLAVALACACAGIIIGVVALTGAGIVFTQAVLGIAQNTLLLALVMTGI
                     AGIVLGMG"
     gene            complement(1471..2421)
                     /locus_tag="VE686_02155"
     CDS             complement(1471..2421)
                     /locus_tag="VE686_02155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002714160.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TAXI family TRAP transporter solute-binding
                     subunit"
                     /protein_id="HYY83287.1"
                     /translation="MKMICRALGAVAVSALVGSAAFAADMRLMTGPQGGVWVPLGGQL
                     KDMWEKAVPGLSVTSMPGAGIANVRGIEEGKTEVGFGNSISTVDALTGAAPFNKPHKN
                     VCNVATLYPQFFQVLVPANAGIKSVKDLKGKTIATQPRGNTAETITQHILKVHGLSYS
                     DVKVSFVSYTDAVEQMKDGHVHAFTLGTTIPSGAVMDLASARDVQLLDLSADLDAMKK
                     INPGYTLVSVPPNTYPKQDKEVNVIGYATHIVAACSLPADTVYAMTKAMAANVPSMAA
                     TNKAMEKLTPKDMAEDIGIPFHPGAARFYKEAVGLDVKTM"
     gene            complement(2563..>3723)
                     /locus_tag="VE686_02160"
     CDS             complement(2563..>3723)
                     /locus_tag="VE686_02160"
                     /EC_number="1.14.13.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016844085.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0071949 - FAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-hydroxybenzoate 6-monooxygenase"
                     /protein_id="HYY83288.1"
                     /translation="GIGGLSAALGLARKGFAVLVLEKAARLGEIGAGIQLGPNAFACF
                     DHLGIGAAAQRTAVYIEQLRLMDALTAEEITHIDLGEAFRARFGNPYAVVHRGDLHGV
                     LLKACEEHPKVALRVSAEVVAYDQDGGSATARLASGERVTGSALIGADGLWSSVRSQV
                     VADGPPRVSGHTTYRSVIPTQEMPEDLRWNAATLWAGPKCHIVHYPLSGWKVFNLVVT
                     THNDAPEPVAGKPVSDEEVRRGFAHVHERAQTIIAHGRDWRLWVLCDRDPVETWVDGR
                     VALLGDAAHPMLQYFAQGACMALEDAVCLADAIERHGGSVEAAFEDYQRKRVVRTARV
                     QLQSRAIGDHVYHAAGAHALVRNEIMRAKTSQDFYDDLAWLYGGPGRHGMVA"
BASE COUNT          609 a         1230 c         1332 g          552 t
ORIGIN      
        1 cccatgccga gcacgatgcc ggcgatgccg gtcatgacga gggcgagaag gagcgtgttc
       61 tgcgcgatcc cgagcaccgc ctgggtgaac acgatgccgg ctcccgtcag cgccaccacg
      121 ccgatgatga tgcccgcgca cgcgcaggcg agggcgacgg cgagcgtgtt cttggcgccg
      181 tcgatcatgg cgtcgacgat gttggcgatg gtcacgttca cgcgggttga cttgcgcagg
      241 agcgcgaccg ggaagcaggc cagtgtcccg gcgagggcgg cgagcggcgc gctgaacccc
      301 gagtacatga tcaccaggat ggtcagcacc gggaggaaca ggtggccgcg ctcgcgcagg
      361 gtcaggcgca ggctcggcag ctcgctgcgc ggcacgccca tgatgccgtg gcgcttggcc
      421 tcgaaatgca ccgcgccgaa gcaggcgacg tagtagagga cggcgggaac cagcgcccag
      481 agcgcgacct ggccgtagga cacctgcagg aactcggcca tgacgaaggc ggcggcgccc
      541 atgatgggcg gcatgatctg tccgccggtg gacgcgacgg cctcgacgcc ggccgcgaaa
      601 tggggcttga agcccgtccg cttcatcagc ggaatcgaga tcggtccgtc gaccatgacg
      661 ttggccaccg cgctgccgga gatggtgccg aacaggctcg aggacaccac cgacaccttg
      721 ccgggaccac cggccgtgtg gcccgtgagg gagagcgcga aatccatgaa cagctggccc
      781 gtgccggtgc gctccatgaa cgagccgaac aggacgaaga tcatcacgta ggcggcggag
      841 acgccgagcg gcgcgccgaa gatgccctcc gtcgtcatga acagctggtc gaggagccgc
      901 atcggctcga cccgcgcgac caagaggccg tagacgagga acacgacggc ggtgatcggc
      961 agggcgagcc cgatcagccg gcgcgtggcc tcgaggacca gcacgacgag caacacggcc
     1021 atgaccatgt cggtcgtggt gaggtcgtcg atatagtaga tgcggttgac gacgtagtcg
     1081 tagttccaga acaggtacgc ggtcggcgca agggcgaggg ccagcagcag gtagtcgagc
     1141 gccgacggag cgccgtcggc cgccgccgcc gtccggcgga agatcaggaa cgtcagcgcc
     1201 agcgcaaaga gcaggtgcgt gccgcggaag atgatcgcct cgggcgtgcc ggtgacgatg
     1261 acccacatgt gatagagggc catcgcgacg gcgatgctcc cggcgagcag ccggatgagc
     1321 cccgcatggc tcaggtcgac cttgccgatc ggatagcgaa acaacgacac cacgcgcttg
     1381 tcccccacca tcccgggagg gagccccccg cgggtccgcc tgcgctccgc gcccaacgag
     1441 aaaagggcgg cttctcagcc gccctcggga tcacatcgtc ttgacgtcga ggccgacggc
     1501 ttccttgtag aagcgcgccg cgccggggtg gaacgggatg ccgatatcct cggccatgtc
     1561 cttcggcgtc agcttctcca tcgccttgtt ggtcgccgcc atggagggga cgttcgccgc
     1621 catcgccttg gtcatggcgt aaacggtgtc cgcggggagc gagcaggcgg cgacgatgtg
     1681 cgtcgcgtag ccgatcacat tcacctcctt gtcctgcttc gggtaggtgt tcggcggcac
     1741 gctgacgagc gtgtaccccg ggttgatctt cttcatggcg tcgaggtcgg cggacaggtc
     1801 gagcaactgc acgtcgcggg cggacgcgag gtccatgacg gctcccgagg ggatggtggt
     1861 gccgagggtg aaggcgtgca cgtggccgtc cttcatctgc tcgactgcgt ccgtgtagga
     1921 gacgaagctg accttgacgt cgctgtagct caggccgtgg accttgagga tgtgctgcgt
     1981 gatggtctcg gccgtgttgc cgcgcggctg cgtcgcgatg gtcttgccct tcaggtcctt
     2041 caccgacttg atgccggcgt tcgcgggcac gagcacctgg aagaactgcg ggtacagggt
     2101 cgcgacgttg cagacgttct tgtgcggctt gttgaaggga gcggcgccgg tgagcgcgtc
     2161 caccgtcgag atcgagttgc cgaagccgac ctcggtcttg ccttcctcga tcccgcggac
     2221 gttcgcgatg ccggcgccgg gcatcgaggt gacgctgagg cccgggacgg ccttctccca
     2281 catgtccttg agctgcccgc cgagcggcac ccagacccca ccctgggggc cggtcatcag
     2341 ccgcatatcg gcggcgaatg ccgcggagcc gacgagcgcc gaaacggcaa cggccccgag
     2401 ggccctgcaa atcatcttca tgtgcgtctc ccgtgtgccg cgccggcatt ctcccgccca
     2461 cgactggcga gggctggcgc gttcgacgag atacctagcc catcgcggcg cgggcgagaa
     2521 gagagcggat ggaaacgggc ggtggcagat gccgatcgcg cgtcacgcga ccatgccgtg
     2581 gcggccgggt ccgccgtaga gccaggccag gtcgtcgtag aagtcctgcg aggtcttggc
     2641 ccgcatgatc tcgttgcgca ccagcgcatg ggctccggcg gcgtgataga catggtcgcc
     2701 gatggcccgt gactgaagct gcacccgggc cgtgcgcacg acacgcttgc gctgatagtc
     2761 ttcgaaggcc gcctcgaccg agccgccgtg gcgctcaatc gcgtcggcga ggcaaaccgc
     2821 gtcctcgagc gccatgcagg ccccttgcgc gaaatactgc agcatcggat gcgcggcgtc
     2881 gccgagaagc gccacgcgcc cgtcgaccca ggtttccacc gggtcacggt cgcacagcac
     2941 ccagagcctc caatcccgcc cgtgcgcgat gatggtctgc gcccgctcgt ggacgtgggc
     3001 gaagccgcgc cgaacctcct cgtcggacac gggcttgccg gccacgggct cgggggcgtc
     3061 gttgtgggtc gtgacgacga ggttgaacac cttccagccc gagagggggt agtggacgat
     3121 gtggcacttc ggcccggccc agagcgtggc ggcgttccag cgcaggtcct cgggcatctc
     3181 ctgcgtcggg atcacggagc ggtaggtggt gtggcccgag acccgcggcg ggccgtctgc
     3241 gaccacctgg ctgcgcacgc tcgaccacag gccgtcggcg ccgatgagcg ccgagccggt
     3301 cacgcgctcg cccgacgcga gccgggccgt cgccgagccg ccgtcctgat cgtaggcgac
     3361 gacctcggcg ctgacccgca gggccacctt cgggtgctct tcgcacgcct tgagcagcac
     3421 gccgtgcagg tcgccgcggt gcacgacggc gtaggggttg ccgaagcggg cccgaaacgc
     3481 ctcgccgaga tcgatgtggg tgatctcctc ggcggtgagc gcgtccatga gccggagctg
     3541 ctcgatgtag accgcggtgc gctgcgccgc cgcgccgatg ccgaggtggt cgaaacacgc
     3601 aaaggcgttc ggcccgagct ggatgccggc gccgatctcg ccgagcctcg ccgccttctc
     3661 gagcaccagg accgcaaagc ccttgcgcgc cagcccgagc gcggccgaca gcccgccgat
     3721 gcc
//
LOCUS       DASQWN010000117         2446 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1408599, whole genome shotgun sequence.
ACCESSION   DASQWN010000117 DASQWN010000000
VERSION     DASQWN010000117.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2446)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2446)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2446
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1408599"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..223
                     /locus_tag="VE686_02165"
     CDS             <1..223
                     /locus_tag="VE686_02165"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY83289.1"
                     /translation="STLPGSAGAYCAAAAYAAAVGGVMFDPQEGPVMTPDQALDLARE
                     TEAGVPKIEKRFAESDRARSKRSRSPGTD"
     gene            412..681
                     /gene="rpsO"
                     /locus_tag="VE686_02170"
     CDS             412..681
                     /gene="rpsO"
                     /locus_tag="VE686_02170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015929522.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000314 - organellar small ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S15"
                     /protein_id="HYY83290.1"
                     /translation="MSITAERKTALIKEHGHKSGDTGSPEVQVAILTERINNLTDHFK
                     SHVKDNHSRRGLLKMVSQRRSLLDYVKRKDEARYRTLIEKLGIRR"
     gene            887..>2446
                     /gene="pnp"
                     /locus_tag="VE686_02175"
     CDS             887..>2446
                     /gene="pnp"
                     /locus_tag="VE686_02175"
                     /EC_number="2.7.7.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012334632.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004654 - polyribonucleotide
                     nucleotidyltransferase activity [Evidence IEA];
                     GO_process: GO:0006402 - mRNA catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polyribonucleotide nucleotidyltransferase"
                     /protein_id="HYY83291.1"
                     /translation="MFDIQREELMWGGRKLTLETGKMARQADGAVVATYGETTVLATV
                     VSEKQPKPGFDFFPLTVNYQERTYAAGRIPGGYFKREGRPTEKETLTSRLIDRPIRPL
                     FAAGYKNDTQVVVTVLSHDLENDPDIVGIVAASAALTLSGVPFMGPIGAARVGYANGQ
                     YKLNTPVQERDDSVLDLVVAGTTDAVLMVESEAKELPEDVMLGAVMFGHKHFQPVIEA
                     IIRLAEKAAKEPRDYQAADISEVEKAVLAIAEGDLRDAYRKTVKQERYAAVDAVKAKV
                     MAELAPADGEAKFEPEKLKSAFKEVQAKVVRWNILDEGKRIDGRDVRTVRPIVAEVGM
                     LPRAHGSALFTRGETQALAVATLGTGEDEQYIDSLEGTYKETFLLHYNFPPYSVGETG
                     RMGSPGRREIGHGKLAWRAIHPVLPPAHEFPYTLRVVSEITESNGSSSMATVCGTSLA
                     LMDAGVPLRRPVAGIAMGLILEGERFAVLSDILGDEDHLGDMDFKVAGTHEGITSLQM
                     DIKIAGITEEIM"
BASE COUNT          433 a          846 c          818 g          349 t
ORIGIN      
        1 gagcaccttg ccgggcagcg ccggtgccta ttgcgcggcc gccgcctatg cggccgccgt
       61 cgggggcgtg atgttcgatc cgcaggaggg tccggtgatg accccggacc aggctctcga
      121 tctcgcgcgc gagaccgagg ctggggtacc caagatcgaa aagcggtttg ccgaaagcga
      181 ccgcgcgcgg tcgaagcgct cgagatcgcc cggaacggac tgagcctcgc ggtcgagggg
      241 ggctggcgtg cccgggtctt ttcgactata ggcggcgcac gcgcgggcta ttgaggcccg
      301 cgctcttcgc ttttgcgacc gcgctggacg acatcccggc ccggccgaca ccagcgaaat
      361 tgggccgagc gccagcgccg gcccctgaca tcacacgaga aaggacaggc gatgtcgatt
      421 acggcggagc gcaagactgc gctcatcaag gaacatgggc acaagtccgg cgataccggc
      481 tcgcccgagg tgcaggtcgc gatcctgacg gagcgcatca acaacctcac cgaccatttc
      541 aagagccacg tgaaggacaa ccattcgcgc cgcggcctcc tgaagatggt gtcgcagcgc
      601 cgctccctgc tcgactacgt caagcgcaag gacgaggcgc gctaccgcac gctgatcgag
      661 aagctcggca tccgccgcta gctctcgctt ggaattccgt ctggagcccg gctccggacg
      721 gccgctcgac ggcgcagggg cgccgtcgcc accgaaggcg gacgacacga tggccatggc
      781 aggatcgcaa ggggcttctg ggggcgtgaa agccgcccgc tggagcctct cgccgtgttg
      841 ctcatggccg tgtggcgttc gcccgaacgc atgaaagacg accgacatgt tcgatatcca
      901 acgtgaagag ctgatgtggg gcgggcgcaa gctcaccctc gagacgggca agatggcccg
      961 gcaggccgac ggcgccgtcg tcgccaccta cggcgagacc acggtcctcg ccaccgttgt
     1021 ttccgagaag cagccgaagc ccggcttcga cttcttcccg ctcacggtga actaccagga
     1081 gcgtacctac gcggccggcc gcattcccgg cggctacttc aaacgcgagg gccggccgac
     1141 cgagaaggag acgctgacct cccgcctcat cgaccgtccg atccgcccgc tgttcgcggc
     1201 cggctacaag aacgacaccc aggtggtcgt gacggtgctg tcgcacgacc tcgagaacga
     1261 tcccgacatc gtcggcatcg tggcggcctc cgccgccctg accctgtcgg gcgtgccctt
     1321 catgggaccg atcggcgcgg cgcgcgtcgg ctacgccaac ggccagtaca agctcaacac
     1381 ccccgtgcag gagcgcgacg actcggtcct cgacctcgtg gtcgccggga ccactgacgc
     1441 ggtgctgatg gtcgagtcgg aagccaagga actccccgag gacgtcatgc tcggggccgt
     1501 gatgttcggc cacaagcact tccagccggt gatcgaagcc atcatccgcc tcgccgagaa
     1561 ggccgccaag gagccgcgcg actaccaggc cgccgacatc tccgaggtcg agaaggccgt
     1621 cctggcgatc gccgagggcg atctgcgcga cgcctaccgc aagaccgtga agcaggagcg
     1681 ctacgccgcc gttgacgccg tgaaggcgaa ggtgatggct gagctcgccc cggccgacgg
     1741 cgaggcgaag ttcgagcccg agaagctgaa gagcgctttc aaggaggtcc aggccaaggt
     1801 cgtgcgctgg aacatcctcg acgaggggaa gcgcatcgac ggccgcgacg tgaggacggt
     1861 ccgccccatc gtggccgaag tcggcatgct gccgcgcgcc cacggctcgg cgctgttcac
     1921 ccgcggcgag acccaggcgc tcgcggtcgc gacgctcggc accggcgagg acgagcagta
     1981 catcgacagc ctcgagggga cgtacaagga gaccttcctc ctgcactaca acttcccgcc
     2041 ctactcggtc ggcgagaccg gccgcatggg ctcgcccggc cggcgcgaga tcggccacgg
     2101 caagctcgcg tggcgcgcca tccacccggt cctgccgccc gcacacgagt tcccctacac
     2161 gctccgcgtc gtgtcggaga tcacggagtc gaacggctcg tcgtcgatgg cgacggtgtg
     2221 cggcacctct ctcgcgctca tggacgcagg cgttcccctg cgccgtcccg tggcgggcat
     2281 cgccatgggc ctcatcctcg agggcgagcg cttcgcggtg ctgtccgaca tcctcggcga
     2341 cgaggatcac ctgggcgaca tggacttcaa ggtggccggc acgcacgagg gcatcacctc
     2401 gctgcagatg gacatcaaga tcgccggcat caccgaggag atcatg
//
LOCUS       DASQWN010000118         5610 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1309620, whole genome shotgun sequence.
ACCESSION   DASQWN010000118 DASQWN010000000
VERSION     DASQWN010000118.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 5610)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5610)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5610
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1309620"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..841
                     /locus_tag="VE686_02180"
     CDS             <1..841
                     /locus_tag="VE686_02180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009758851.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="glycine dehydrogenase"
                     /protein_id="HYY83292.1"
                     /translation="VVRTLSRMASDDVVSLPPDVGAAEDLLAQIDDTVSCVVVQNPDV
                     FGNLRDLRPIAEKAHKHGALLVAVFTEAVSLGVVASPGAMGADIVVGEGQSIGVGLTF
                     GGPYVGLFATRSKFVRQMPGRLCGETVDADGQRGFVLTLSTREQHIRRDKATSNICTN
                     SGLCCLAFTIHMTLLGEAGLTRLARVNHANAVKLAEALRGVSGVEVLNKSFFNEFTVR
                     LSRPADEVVETLAAKGILAGVPVSRLLAGAGLDDLLLVASSEVNTDDDRAALVAALKE
                     ALS"
     gene            1056..2573
                     /gene="gcvPB"
                     /locus_tag="VE686_02185"
     CDS             1056..2573
                     /gene="gcvPB"
                     /locus_tag="VE686_02185"
                     /EC_number="1.4.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019403686.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004375 - glycine dehydrogenase
                     (decarboxylating) activity [Evidence IEA];
                     GO_process: GO:0006546 - glycine catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminomethyl-transferring glycine dehydrogenase
                     subunit GcvPB"
                     /protein_id="HYY83293.1"
                     /translation="MHPTFTGNKALAQVEPLLFEIGRLQTTGVDLDEPEPFAPRLGGL
                     ERKDPIGLPGLSEPEAMRHYVRLSQKNYGIDTGLFPLGSCTMKHNPRLNERMARLPGF
                     GDVHPLQPVSTVQGALALMMELARYLTTLTGMSAVALSPKAGAHGELCGMMAIKAAID
                     AKGEGATRRTVLVPDSAHGTNPATAALIGFQVKQVPARDDGWVHVDDVKKLIGPDVAA
                     IMLTNPNTCGLFEPQIVEIAAALHEAGAYFYCDGANFNAIVGKAKPGDLGVDAMHINL
                     HKTFSTPHGGGGPGSGPVVLSERLAPFAPVPFVRASGHRLELVEHAEEADGEPFGRIT
                     AFHGQMGMYVRALSYMLSHGSDGMRQASEDAVLNANYVRAGLSDLMSLPFGDKPCMHE
                     VLFDDAWLKDTGVTTLDFAKAMIDEGYHPMTMYFPLVVHGAMLIEPTESESKASLDLF
                     VATLRDLSMAAKRGETERFTGAPYHAPRRRLDETRAARSPVLKWTPPQPVQEAAE"
     gene            complement(2611..3582)
                     /locus_tag="VE686_02190"
     CDS             complement(2611..3582)
                     /locus_tag="VE686_02190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011090510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0042597 - periplasmic space [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tripartite tricarboxylate transporter substrate
                     binding protein"
                     /protein_id="HYY83294.1"
                     /translation="MRFRLSGLVALGLFALALPAATARAQDYPTRPVRWVVPYPPGGT
                     TDVLARLIGEYLSRKMGQQFFIDNRPGAGNNIGTDAVVKAAPDGYTVLLVNPANGINA
                     SLYKSLPFNFIRDIAPVGGFVRVPNVMEINRDVPAKTVAEFIAYAKANPGKINMASSG
                     LGTSVHLSGELFMAMTGVKMTHVPYRGAGPALTDLISGQVHVLFDNLPSSVEHIRAGT
                     LRGLAVTTEQPSPALPGVPTVAETVPGYEASAWFGMGAPKDTPRPIIDKLNAAINEAL
                     KDPEMLKKLADLGGTPIGGTPEDFGKVVAAETEKWRKVVEFAGVKLD"
     gene            complement(3779..4264)
                     /locus_tag="VE686_02195"
     CDS             complement(3779..4264)
                     /locus_tag="VE686_02195"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016847056.1"
                     /note="Produces ATP from ADP in the presence of a proton
                     gradient across the membrane. Subunit B is part of the
                     membrane proton channel; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP F0F1 synthase subunit B"
                     /protein_id="HYY83295.1"
                     /translation="MFFEAELWVAISFVIFLAIVWKVGGFKAMTGGLDSRAERIRAEL
                     AEAQRLRQEAAALLSEYQRKREAAERDAAEIVAAARIEAERLAQEAEEKMADFVKRRT
                     AAAETKIAQAEAQASAEVRAAAVEAAVKASETVLRSQLQGQAAEDLITRNLADIRGKL
                     H"
     gene            complement(4275..4820)
                     /locus_tag="VE686_02200"
     CDS             complement(4275..4820)
                     /locus_tag="VE686_02200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017486419.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit B'"
                     /protein_id="HYY83296.1"
                     /translation="MAETLKGTTAADPHAGAHGAFPPFESEAFASQLLWFAIAFGLLY
                     FLMSRIALPKVGKLLDARSARLAADLEEAQRLKAESEAASQAHEKALAEARARSQAIA
                     QETRNALSAQSNERRKALEADLGGKLAEAEATIRAGTAAAMANVRGIAADTASAIVER
                     LTGRAPDRAAIEAALDATQRR"
     gene            complement(4891..5118)
                     /locus_tag="VE686_02205"
     CDS             complement(4891..5118)
                     /locus_tag="VE686_02205"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002963544.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0045263 - proton-transporting ATP
                     synthase complex, coupling factor F(o) [Evidence IEA];
                     GO_function: GO:0015078 - proton transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0015986 - proton motive force-driven ATP
                     synthesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit C"
                     /protein_id="HYY83297.1"
                     /translation="MDPVAAKYIGAGLACLGMAGAGIGLGNLFGQFLSGALRNPSAAE
                     GQRGTLLLGFALTEALGIFSLLIALLLLFAV"
     gene            complement(5169..>5610)
                     /gene="atpB"
                     /locus_tag="VE686_02210"
     CDS             complement(5169..>5610)
                     /gene="atpB"
                     /locus_tag="VE686_02210"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012336550.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000276 - mitochondrial
                     proton-transporting ATP synthase complex, coupling factor
                     F(o) [Evidence IEA];
                     GO_component: GO:0045263 - proton-transporting ATP
                     synthase complex, coupling factor F(o) [Evidence IEA];
                     GO_component: GO:0045264 - plasma membrane
                     proton-transporting ATP synthase complex, coupling factor
                     F(o) [Evidence IEA];
                     GO_function: GO:0046933 - proton-transporting ATP synthase
                     activity, rotational mechanism [Evidence IEA];
                     GO_process: GO:0015986 - proton motive force-driven ATP
                     synthesis [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit A"
                     /protein_id="HYY83298.1"
                     /translation="MVPYGFTVTSHIIITFALAALVILTVIVYGLMKHGTHFFGLFVP
                     SGVPGWLLPLLVVIEVISFVSRPISLSVRLFANMLAGHIALKIFAGFVGILLGAGFWS
                     VLAPLPLALAVALTALEVLVAVLQAYVFATLTSIYLNDALHPGH"
BASE COUNT          860 a         1933 c         1994 g          823 t
ORIGIN      
        1 ggtggtgcgg acgctgtcgc ggatggcgag cgacgacgtg gtgtcgctcc cgcccgacgt
       61 cggcgcggct gaagacctgc tggcgcagat cgacgacacg gtctcctgcg tggtggtgca
      121 gaatccggac gtcttcggca acctgcgcga cctgcgcccg attgccgaga aggcgcacaa
      181 gcacggcgcg ctgctcgtcg ccgtgttcac ggaagccgtg tcgctcggcg ttgtcgcgtc
      241 gccgggcgcc atgggggccg acatcgtcgt cggggagggc caatccatcg gggtcggcct
      301 gacgttcggc ggcccctacg tcggcctctt cgccacccgc tcgaagttcg tgcgccagat
      361 gcccgggcgc ctgtgcggcg agaccgtcga cgccgacggg cagcgcggct tcgtgctcac
      421 gctctcgacc cgcgagcagc acatccgccg cgacaaggcg acctcaaata tctgcacgaa
      481 ctcaggcctt tgttgcctcg ccttcacgat ccacatgacg ctgctcggcg aggccgggct
      541 cacgcgcctc gcccgcgtga accacgccaa cgccgtgaag ctcgccgagg cgctgcgcgg
      601 cgtgagcggc gtcgaggtgc tcaacaagag cttcttcaac gagttcaccg tgcggctgtc
      661 gcgccccgcc gacgaggtgg tcgagaccct cgccgccaag ggcatcctcg ccggcgtccc
      721 ggtttcgcgc ctcctcgccg gcgccggcct cgacgaccta ctcctcgtcg cctcgagcga
      781 ggtcaacacc gacgacgacc gcgccgcctt ggttgcggcg ctgaaggagg ctttgtcgtg
      841 atcgcgctgc gcgccaatcc ctcccctcgc ggggagggat gcgcgccggc gacttatcgc
      901 gcagcacagt cttacgggat cgcatcatga tgaaccgcca gggccgtccc acagcgccgc
      961 aggcgcatgg cgtcgccgat cccgccgccg gcatgcccga cgaggccgcg aaagccgagg
     1021 gcgatcgcac gcgcgtgacc gccgcgccgc cgcagatgca tccgaccttc acgggcaaca
     1081 aggcgctggc gcaggtcgag ccgctcctgt tcgagatcgg ccgcctccag acgaccggcg
     1141 tcgatctcga tgagccggag cccttcgcgc cccgcctcgg cgggctcgag cgcaaggatc
     1201 cgatcggcct cccaggcctg tcggagcccg aggcgatgcg ccactacgtg cgcctgagcc
     1261 agaagaacta cggcatcgac acggggctgt tcccgctcgg ctcgtgcacc atgaagcaca
     1321 acccgcgcct gaacgagcgc atggcgcggc tgcccggctt cggcgacgtg catccgctcc
     1381 agccggtctc gacggtccag ggtgcgctcg cgctgatgat ggagcttgcg cgctatctca
     1441 ccacgctcac gggcatgagc gccgtcgcgc tctcgccgaa agccggcgcg cacggcgagc
     1501 tgtgcggcat gatggccatc aaggcggcca tcgacgccaa gggcgagggc gccacgcgcc
     1561 gcaccgtgct ggtgcccgat tcggcgcacg gcacgaatcc ggcaaccgcg gcgctgatcg
     1621 gcttccaggt gaagcaggtc cccgctcgcg acgacggctg ggtccacgtc gacgacgtga
     1681 agaagctgat cggtcccgat gtcgcggcga tcatgctgac gaacccgaac acctgcggcc
     1741 tgttcgagcc gcagatcgtc gagatcgcgg cggcgctgca cgaggcgggc gcatacttct
     1801 actgcgacgg ggcgaacttc aacgccatcg tcggcaaggc gaagcccggc gacctcggcg
     1861 tcgacgccat gcacatcaac ctgcacaaga ccttctcgac gccgcacggc ggcggcggcc
     1921 cgggctcggg gccggtggtg ctgtcggagc gcctggcgcc gttcgcgccg gtgcccttcg
     1981 tgcgcgccag cggccaccgg ctcgagctcg tcgagcacgc cgaagaggcc gacggggagc
     2041 ccttcggccg aatcaccgcc ttccacggcc agatgggcat gtacgtgcgg gcgctgtcct
     2101 acatgctctc gcacggttcc gacggcatgc ggcaggcgtc ggaggacgcg gtgctcaacg
     2161 cgaactacgt gcgcgccggc ctctccgacc tcatgtcgct gcccttcggc gacaagccgt
     2221 gcatgcacga ggttttgttc gacgacgcct ggctcaagga caccggcgtg accaccctcg
     2281 acttcgccaa ggcgatgatc gacgagggct atcacccgat gaccatgtac ttcccgctcg
     2341 tggtgcacgg cgccatgctg atcgagccga cggagtcgga gtcgaaggcc tcgctcgacc
     2401 tcttcgtcgc gaccctgcgc gacctctcca tggcggccaa gcgcggcgag acggagcgct
     2461 tcaccggcgc gccctaccac gcgccgaggc gccgcctcga cgaaacccgc gcggcccgga
     2521 gcccggtcct caagtggacc ccgccgcagc ccgtgcaaga ggcggcggag tagcccgcct
     2581 ctcccgcgag cgcgagaggc gagcggcggc tcagtcgagc ttcacgccgg cgaactcgac
     2641 caccttgcgc cacttctcgg tttcggcggc gacgaccttg ccgaagtcct cgggcgtgcc
     2701 gccgatcggg gtgccgccga ggtcggcgag cttcttcagc atctccgggt ccttgagggc
     2761 ctcgttgatg gcggcgttga gcttgtcgat gatcggtcgg ggcgtgtcct tcggcgcgcc
     2821 catgccgaac caggcgctcg cctcgtagcc cggcacggtc tcggccacgg tcggcacgcc
     2881 cggcagcgcc ggggacggct gctcggtggt gacggcgagg ccgcgcaggg tgccggccct
     2941 gatgtgctcg accgaggagg gcaggttgtc gaagagcacg tgcacctggc cggagatgag
     3001 gtcggtgagc gccggccctg cgccgcggta gggcacgtgg gtcatcttca cccccgtcat
     3061 agccatgaac agctcgcccg acaggtggac ggacgtgccg agccccgacg aggccatgtt
     3121 gatcttgccc gggttggcct tggcgtaggc gatgaactcg gcgacggtct tcgcgggaac
     3181 gtcgcggttg atctccatga cgttggggac gcgcacgaag ccgcccaccg gggcgatgtc
     3241 gcggatgaag ttgaacggca ggctcttgta gagcgaggcg ttgatgccgt tcgccggatt
     3301 gaccagaagg accgtgtagc cgtcgggcgc tgccttcacg acggcgtcag tgccgatgtt
     3361 gttgccggca ccgggccggt tgtcgatgaa gaactgctgg cccatcttgc gcgacaggta
     3421 ttcgccgatg agccgcgcca gcacgtccgt ggtgccgccg ggcgggtagg gcacgaccca
     3481 gcgcaccggg cgcgtcgggt aatcctgcgc gcgcgccgtt gcggcgggga gcgccaaggc
     3541 gaaaaggcca agggcgacga gaccggacaa cctgaagcgc atgcgtttct ccccgtggca
     3601 gcgcccggcc cctgacgggc cggatcgcgc gaggggcgca ccctacggcg ttccgatgga
     3661 cgcgcaagct ctcaggcggc cgtcatcctc gggcggagcc gaaggcggag acccgaggat
     3721 ctcgggccgg agctctacat ccgacgaggt actcgggccg cgcgccggcg gcgcttgctc
     3781 agtgcagctt gccgcggatg tcggcaaggt tgcgggtgat gaggtcttcg gcggcctggc
     3841 cctggagctg gctgcgcagc acggtctcgg acgccttcac ggcggcttcg acggcggcgg
     3901 cacggacctc cgccgacgcc tgcgcctcgg cctgggcgat cttcgtctcg gcggccgcgg
     3961 tgcggcgctt cacgaagtcg gccatcttct cctcggcctc ctgcgccagg cgctcggcct
     4021 cgatgcgggc ggccgcgacg atctcggccg cgtcgcgctc ggccgcctcg cgcttgcgct
     4081 ggtactccga caggagggcc gccgcctcct ggcgcaggcg ctgcgcctcg gcgagctcgg
     4141 cgcggatgcg ctcggcgcgg gagtcgagcc cgcccgtcat ggccttgaac ccgccgacct
     4201 tccacacgat cgcgaggaag atcacgaaag agatggcgac ccagagttcg gcttcgaaga
     4261 acatcctcgg ctccttagcg ccgctgcgtg gcgtcgaggg ccgcctcgat ggcggcgcga
     4321 tcgggcgcgc ggccggtgag ccgctcgacg attgcggagg ccgtgtcggc cgcgatgccg
     4381 cgcacgttcg ccatggcggc ggcggttccg gcacggatcg tcgcctccgc ctcggcgagc
     4441 ttgccgccga gatccgcctc gagcgccttg cggcgctcgt tcgactgcgc cgagagggcg
     4501 ttgcgggtct cctgcgcgat cgcctgcgag cgggcgcggg cttcggcgag tgccttctcg
     4561 tgcgcttgcg aggcggcttc ggattcggcc ttgaggcgct gggcctcctc gaggtcggcg
     4621 gcgagccggg ccgaacgcgc gtcgagcaac ttaccgacct tcggcaaggc gatgcgcgac
     4681 atcaggaagt acagaaggcc gaaggcgatc gcaaaccaca ggagctgcga cgcaaaggct
     4741 tcgctctcga atggtgggaa ggcgccgtgc gcgcccgcgt gcgggtcggc cgcggtggtg
     4801 cccttcagtg tctctgccat ggcgtcctca atcagaacag caagagggag cggcgaacac
     4861 cgctccctcg cgacggctgc gccgggtcgc ttagacggcg aacaggagaa gcagcgcgat
     4921 cagcagcgag aagatgccga gcgcttccgt cagcgcgaag ccgagcagca gcgtgccccg
     4981 ctggccttcg gccgccgacg gattgcgcag cgcgcccgag aggaactggc cgaacaggtt
     5041 gccgaggccg atgcccgcgc ccgccatgcc gaggcaggcg agaccggcac cgatgtactt
     5101 cgcagcaacg ggatccataa cgtgaaactc ctgtgggggt ggggtctgtg gtggaaagga
     5161 tccggccgtc agtggccggg gtggagcgcg tcgttcaggt agatcgaggt gagcgtcgcg
     5221 aacacgtagg cctgcagcac cgcgaccagc acctcgaggg cggtgagggc gaccgcaagg
     5281 gcgagcggca ggggcgcgag cacgctccag aagccggctc cgagcaggat gccgacgaag
     5341 cccgcgaaga ttttcagcgc gatgtggccc gccagcatgt tggcgaagag gcggaccgac
     5401 aggctgatcg gccgcgatac gaacgagatc acctcgatga ccaccagcaa gggcaggagc
     5461 cagcccggca cgcccgacgg cacgaacagg ccgaagaagt gggtgccatg cttcatcagc
     5521 ccgtagacga tgacggtgag gatcacgagg gcggcgagcg cgaacgtgat gatgatatgg
     5581 ctcgtgaccg tgaagccgta cggcaccatg
//
LOCUS       DASQWN010000119         2708 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1309668, whole genome shotgun sequence.
ACCESSION   DASQWN010000119 DASQWN010000000
VERSION     DASQWN010000119.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2708)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2708)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2708
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1309668"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            115..1455
                     /gene="gcvPA"
                     /locus_tag="VE686_02215"
     CDS             115..1455
                     /gene="gcvPA"
                     /locus_tag="VE686_02215"
                     /EC_number="1.4.4.2"
                     /inference="COORDINATES: protein motif:HMM:NF001696.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004375 - glycine dehydrogenase
                     (decarboxylating) activity [Evidence IEA];
                     GO_process: GO:0006546 - glycine catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminomethyl-transferring glycine dehydrogenase
                     subunit GcvPA"
                     /protein_id="HYY83299.1"
                     /translation="MTFNPHTDGDRVVMLEATGVNGVEEFFTPVPQRVRFPELDLPPV
                     LTELEATDHLAAFAARNDAPPGEDIYLGAGSYRHFIPATVGQILARGEFYTAYTPYQP
                     EVAQGTLQVIYEFQSLVAALTGMDVANASMYDGATALAEGALMTVSSSRGRRRIVISP
                     TVHPAYRAVLRTYLEGLDLDLVEMPLTSSGFITAPDDIAPFLTDDLACVVVQYPNFFG
                     GIEEIAAMGDLAHERGGALVVSTYPVPLALLQPPGELGADVVAAEGQELGVPQGYGGP
                     YVGLLASRQSYVRQMPGRLAGMTTDSDGKRGFVLTLQTREQHIRREKATSNICTNQGL
                     MATAATVYMATLGPEGFREVARRSYQNAHYLAERVSDVPGYSLATDGAFFHEFVVATP
                     GPARDVLATLLEQGIYGGLDLATIDPTLSGYLLMCATETNTKQGIDRLVEALPR"
     gene            1617..>2708
                     /gene="der"
                     /locus_tag="VE686_02220"
     CDS             1617..>2708
                     /gene="der"
                     /locus_tag="VE686_02220"
                     /EC_number="3.6.5.-"
                     /inference="COORDINATES: protein motif:HMM:TIGR03594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_function: GO:0043022 - ribosome binding [Evidence IEA];
                     GO_process: GO:0042254 - ribosome biogenesis [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome biogenesis GTPase Der"
                     /protein_id="HYY83300.1"
                     /translation="MAKPIVAIVGRPNVGKSTLFNRLIGERRAIVEDEPGTTRDRVYG
                     TTDWGGVEFTLVDTGGLQDDREVETESFTQIAHHTREQAHAAIGEADVIVFMVDARSG
                     VNAGDHEVADMLRRADKPTILVANKADSVARRDAAVDFYELGLGDPIAISSYHGSGTG
                     DLLDRVVEALPEAEHEEELEGPAIAIVGRPNVGKSRLLNALLGQERSIVSDVPGTTRD
                     SLDTVFVWAGQPITLIDTAGIRRRGRIDRGIEQYSVLRSMRAIDRADVVLLVIDATEE
                     FTSQDLHIAGYIAEQKKGVVIVVNKWDLIEKDSSTMEEYREQARSALDFMPYAPLVFV
                     SAKFGHRVQQVMDTALAVVSERHRRVPTAA"
BASE COUNT          505 a          843 c          892 g          468 t
ORIGIN      
        1 cgaggagtac gcggaactgg ctaaatcttc cgcacactag cggttgcggc acgaggtcgc
       61 gcaatggcaa acgattccac ttttcccgat tgaccggaga acagaaagac gttcatgacg
      121 ttcaatccac acaccgacgg cgatcgcgtc gtcatgctcg aagccaccgg ggtgaacggg
      181 gtggaggagt tcttcacccc ggttccgcaa cgcgttcggt ttcccgagct tgatttgccg
      241 cctgtcctaa ccgaactgga ggcgactgac cacctcgccg ctttcgcggc gcggaacgac
      301 gcgccgccag gggaggacat ctatctcggc gcgggatcgt accgacactt cataccggcg
      361 accgtggggc agatcctggc ccgcggcgag ttctatacgg cctatacgcc ctaccagccg
      421 gaagtcgccc agggcaccct gcaggtgatc tacgagtttc agagtctggt tgccgctctg
      481 accgggatgg acgtggccaa tgcctcgatg tacgacggcg ccacggcact cgccgaaggg
      541 gcgctgatga cggtctcgag ctcccgtggc aggcgccgga tcgtcatatc gccgaccgtt
      601 cacccggcat accgcgccgt gcttcgcacc tatctcgagg gactggatct ggacctggtc
      661 gaaatgccac tgaccagctc gggtttcata acggccccgg acgacatcgc gcctttcctg
      721 acggacgatc tggcttgcgt cgtggttcag tacccgaact tctttggagg tattgaagag
      781 atcgcggcca tgggcgatct cgcccacgag cgcgggggag ccctggtcgt cagcacatat
      841 ccggttccgc tcgcactcct tcagcctcca ggtgagctgg gagccgacgt cgtcgccgcg
      901 gaggggcagg aactcggagt tccgcaaggg tacggcggtc cgtacgtcgg actgctcgct
      961 tcacgccaat cgtatgtgcg gcagatgcca gggcgactgg ccgggatgac gaccgattcc
     1021 gacggcaagc gaggcttcgt gttgacgctg cagacgcgtg agcagcacat ccgacgggag
     1081 aaagcaacgt ccaatatctg cacgaaccag gggctcatgg caaccgccgc caccgtctac
     1141 atggcgacac tcggtccgga gggcttccgg gaggtggcac ggcggagcta ccagaacgcg
     1201 cactatctcg cggaacgggt gagcgacgta cccggctact cgctggccac ggacggcgca
     1261 tttttccatg agttcgtcgt tgccacgcct ggtccggcgc gcgacgtgct ggcgactctg
     1321 cttgagcaag ggatctatgg gggtctggac ctggcaacga tcgatccgac cctcagtggc
     1381 tacctcctga tgtgcgccac cgagacgaac accaaacagg ggatcgaccg cctggtagag
     1441 gctcttccgc gctagcaccg gctcgacact ttcttgaaga gcccaatcga gattcgtagc
     1501 ggtgggactg ttatactcgc gcgctgtcat gcgttccgac cctcaggtct cgggcgcgag
     1561 gggagagccg gggtgaaacc gccctggact cggcgtgctg tgttcacgga gcgctcgtgg
     1621 caaaaccaat cgtcgcaatt gtcggccggc ctaatgtagg caagtccacg ctgttcaacc
     1681 gcttgatcgg ggaacggcgc gccatcgtgg aagacgagcc aggaacgacg cgcgaccgcg
     1741 tctacggcac gactgattgg ggcggagtcg agttcacgct ggtcgacacc ggcggtctcc
     1801 aggacgatcg ggaagtcgag accgagtctt tcacccagat tgcccaccac acacgggagc
     1861 aggcccacgc cgccatcggc gaggccgacg tcatcgtctt tatggtcgat gcgcgcagcg
     1921 gggtcaacgc cggagaccat gaagtcgccg acatgttgcg gcgagccgac aagccaacga
     1981 ttctggtggc gaacaaggct gacagcgtag cccgccgcga cgccgcggtc gacttctacg
     2041 aattgggtct cggggatccg atcgccatct cctcgtacca cggtagcggc accggggacc
     2101 tgctcgatcg ggtggtggag gcgctacccg aggccgagca cgaagaagag ctcgaggggc
     2161 ccgcgatcgc gatcgtgggg cgcccgaacg tgggcaagag ccgcctgctc aacgcgctcc
     2221 tgggtcagga gcggtcgatc gtcagcgacg tcccagggac gacccgcgac tcgctcgaca
     2281 cggttttcgt ctgggccggg cagccgatca cgctgatcga cactgctggt attcgccgcc
     2341 gcggccgaat cgaccgcggc atcgagcagt acagcgtgct gcgatcgatg cgggcgatcg
     2401 accgggcgga cgtcgtactg ctggttatcg acgccaccga ggaattcacc tctcaggatc
     2461 tccatattgc ggggtatatc gcggagcaga agaagggcgt cgtcatcgtc gtcaacaagt
     2521 gggacctgat cgagaaggac tcctcgacga tggaggagta ccgggagcag gcgagatcgg
     2581 cactcgactt catgccctat gcgccgctcg tgttcgtctc cgcgaagttc gggcatcgcg
     2641 tgcagcaggt gatggacacc gcgctggcag tggtgagcga gcggcaccgg cgggtgccga
     2701 cggcggcg
//
LOCUS       DASQWN010000120         2168 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1110893, whole genome shotgun sequence.
ACCESSION   DASQWN010000120 DASQWN010000000
VERSION     DASQWN010000120.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2168)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2168)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2168
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1110893"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(129..1661)
                     /locus_tag="VE686_02225"
     CDS             complement(129..1661)
                     /locus_tag="VE686_02225"
                     /EC_number="6.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007563612.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016874 - ligase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA carboxylase subunit beta"
                     /protein_id="HYY83301.1"
                     /translation="MKDMLGRLEERRAQARLGGGERRVEAQHARGKLTARERIELLLD
                     KGSFEEFDMFVEHRSTDFGMEKVKIPGDGVVTGWGTVNGRTVFVFAKDFTVFGGSLSE
                     AHAQKITKIQDMALKMRAPIVGLFDAGGARIQEGVAALGGYGEVFKRNVIASGVIPQI
                     SVIMGPCAGGDVYSPAMTDFIFMVRDRSYMFVTGPDVVKTVTNETVTSEELGGAKVHT
                     TKSSVADGAYDNDVEALLQVRRLIDFLPANNMDGVPEIPSFDDPNRTDDSLDTLIPDN
                     PNKPYDMKELILKVVDEGDFFEIQESYAKNIITGFGRVEGRTVGFVANQPMVLAGVLD
                     SDASRKAARFVRFCDAFNIPIVTFEDVPGFLPGTAQEYGGLIKHGAKLLFAYSEATVP
                     LVTVITRKAFGGAYDVMASKHIGGDINYAWPTAQIAVMGAKGAVEIIFRQDLGDADKI
                     AARTKEYEDRFMSPFVAAERGYIDEVIMPHSTRRRIARALAMLRHKETERPWKKHDNI
                     PL"
     gene            1813..>2168
                     /locus_tag="VE686_02230"
     CDS             1813..>2168
                     /locus_tag="VE686_02230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009764338.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY83302.1"
                     /translation="MNKTTQYAALAVSLSLLAAGCASRSEDVGAAYVSPVTYQSYNCK
                     ELSLEAQRVSSAAAAAAGAQDSQRTKDAVATTAAVVIFWPAAFLVGGDNAKTAELANL
                     KGQMQAIEAASIQKKCG"
BASE COUNT          380 a          683 c          692 g          413 t
ORIGIN      
        1 catcgaggag ctcatgcgcg tgacgtgagt gagcttcggc gtcaacaacc tgattgagaa
       61 gatgggcgac atcatcgatc cgcttcacat ctggcttctg tttgatgagg gtcatacgac
      121 tgtacctctt acagcggaat gttgtcgtgc ttcttccagg gccgctcggt ctccttatgg
      181 cgcagcatcg ccagagctcg tgcgatccgc cgccgcgtcg aatgcggcat gatcacttcg
      241 tcgatgtagc cgcgctccgc cgccacgaag ggcgacatga agcggtcctc gtattccttc
      301 gtgcgggccg cgatcttgtc cgcgtcgccg agatcctgac ggaatatgat ctcgaccgcg
      361 cccttggctc ccatcacggc gatctgcgca gtcggccagg cgtagttgat gtcgccgccg
      421 atatgctttg atgccatcac gtcataggcg ccgccgaagg cctttcgcgt gatcacggtg
      481 acgagcggca cggtcgcttc cgaataggcg aacagcagct tggcgccgtg cttgatcagg
      541 ccgccatatt cctgcgccgt gcccggcagg aagcccggca cgtcctcgaa ggtgacgatc
      601 gggatgttga aggcatcgca gaagcgcacg aagcgcgcgg ccttgcggga ggcatcggag
      661 tcgagcacgc ctgccagcac catcggctgg ttggcgacga atccgaccgt gcggccctcg
      721 acgcggccga agcccgtgat gatgttcttc gcgtaggatt cctggatctc gaagaaatcg
      781 ccctcgtcca cgaccttcag gatcagctcc ttcatgtcgt agggcttgtt cgggttgtcc
      841 gggatcaagg tgtcgagact atcgtctgtg cggttcgggt cgtcgaagct cgggatctcc
      901 ggcacgccgt ccatgttgtt ggcggggagg aagtcgatga ggcggcgcac ctgcagcagc
      961 gcctcgacgt cgttgtcata ggcgccgtcg gctaccgacg acttggtggt gtggaccttg
     1021 gcgccgccga gttcttccga ggtcacggtc tcgttggtga cggtcttgac cacgtcgggg
     1081 ccggtgacga acatgtagga gcggtcgcgc accatgaaga tgaagtcggt catggccggc
     1141 gaatagacgt cgccgccggc gcacgggccc atgatcaccg agatctgcgg gatcacgccc
     1201 gaggcgatca cgttgcgctt gaagacctcg ccatagccgc cgagcgccgc cacgccctcc
     1261 tgaatgcggg cgccgccggc atcgaacagg ccgacgatcg gggcgcgcat tttcaacgcc
     1321 atgtcctgga tcttggtgat cttctgggcg tgcgcctccg agagcgagcc gccgaagacg
     1381 gtgaaatcct tggcaaagac gaagaccgtt cggccattga cggtgcccca gccggtgacg
     1441 acgccgtcgc ccgggatctt gaccttctcc atgccgaaat cggtggagcg gtgctcgacg
     1501 aacatgtcga actcctcgaa ggagcccttg tcgaggagga gctcgatccg ctcgcgggcg
     1561 gtcagcttgc cgcgggcgtg ctgcgcctcg acgcgcctct cgccgccgcc gaggcgggcc
     1621 tgcgcgcgcc gctcctcaag ccttccgagc atatctttta tggctggacc ctgactccgg
     1681 gaaaatgatc ccccgcttag cacagccgtg cctgtgtcaa aatcccacta tgggtgtgtg
     1741 ctccacagca cttcacagac cagggcgagc aggttgggaa agttccactg ttacgttaca
     1801 acggggctga acatgaacaa gaccacccag tatgcggctc tggccgtgtc cctgtcgctt
     1861 ctggcagccg gctgcgccag ccgctccgag gacgtcggag cagcctatgt gtctccggtc
     1921 acctaccaga gctacaactg caaggaactg agccttgagg ctcagcgggt cagcagcgcg
     1981 gccgccgccg cggcaggtgc ccaggattcc cagcggacca aggatgcagt cgccacgact
     2041 gctgccgttg tcatcttctg gccggccgcc ttcctggtgg gcggcgacaa tgccaagacc
     2101 gcggaactcg ccaacctcaa gggacagatg caggccatcg aggccgcttc gatccagaag
     2161 aagtgcgg
//
LOCUS       DASQWN010000121         4576 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1111023, whole genome shotgun sequence.
ACCESSION   DASQWN010000121 DASQWN010000000
VERSION     DASQWN010000121.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 4576)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4576)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4576
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1111023"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..534
                     /locus_tag="VE686_02235"
     CDS             <1..534
                     /locus_tag="VE686_02235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017264449.1"
                     /note="catalyzes the formation of malonyl-CoA from
                     malonate and CoA; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="malonyl-CoA synthase"
                     /protein_id="HYY83303.1"
                     /translation="ELRVAEPESGKVLGTEEIGVIEVKGPNVFKGYWRMPEKTAQEFR
                     AEGFFITGDLGKVDARGYVHIVGRGKDLIITGGYNVYPKEVETEIDLIPGVIESAVIG
                     LPHADFGEGVAAVVVADPAKAPSEAEILQALEGRLARFKQPKRVMIVPELPRNTMGKV
                     QKNILRDTYAGLFAKGA"
     gene            complement(535..876)
                     /locus_tag="VE686_02240"
     CDS             complement(535..876)
                     /locus_tag="VE686_02240"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY83304.1"
                     /translation="MVIRRSLFAAAAVALASVAGPAAAADVVDGPFVWVVGARPVVRE
                     VVARPRVTVVRREAAIVRQAAYGCGCLGLPWGGAYETYVDLPWGGLRATCAPVVRRVI
                     RTKRVVLSRKG"
     gene            complement(870..1154)
                     /locus_tag="VE686_02245"
     CDS             complement(870..1154)
                     /locus_tag="VE686_02245"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY83305.1"
                     /translation="MRPLPLLFLSAATFLASANADAQGCWPCGPVAYARPAYVVAAPP
                     PVVVRPIRVAYAGPGVGPCLACAAMAAFPPPAARVVYDLRTGTIRMVSPW"
     gene            1425..3407
                     /locus_tag="VE686_02250"
     CDS             1425..3407
                     /locus_tag="VE686_02250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008551451.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AMP-binding protein"
                     /protein_id="HYY83306.1"
                     /translation="MAPQSAREDTFPKLLVRNAEVRPARTAFRHKDRGIWQSWTWGEV
                     AEIVRAYASGLRALGLTRGAKIAIVGYNRPRLYWTMAAAQWLGAVPIPVYADSVADEM
                     AFVLAHAEVTHAVAQDQEQIDKLLSIAGQVPLLKHLLYDEERGLRDYDHTHLHPIDHV
                     VEEGRRRLADDPVEPQAIEREMQAGRGSDLAIILYTSGTTGRPKGVMLSYDNVIAASE
                     IGCGFDKLAEGDEIIAYLPIAWVGDHIFSYAQAILVGLCVNCPESPDTVVDDRREVGT
                     TYAFAPPRVFETMLTLTMVRMEDASALKRRVFKFFIEHANRVGEKILNGERGVTLWDR
                     FVYRLGDLLVYAPLRNRFGLTSIKVGYTAGEAIGPDIFKFYRSIGVNLKQLYGQTEAA
                     VYVTMQPDGEIRADTVGRPAPQVEIRIDDSGEVLYRSPGVFLGYYKDAEKTAETKTPD
                     GFVRSGDAGFFDTDGHLKIIDRAKDVGRLRDGGLFPPKYVENKLKFYPNIKEAVAFGA
                     ERDFVACFINIDLVAVGNWAERNGVTYGSYQELAGHPLVYDMIGKHVDEVNRSLAREP
                     RMGGAQVRRFLVLHKELDPDDGELTRTQKVRRGFIAERYAPLIQALYDGTSEADISTE
                     VTFEDGRKGVIAARVKIRDMKVYPVEAAAPVLEAAE"
     gene            3619..4419
                     /locus_tag="VE686_02255"
     CDS             3619..4419
                     /locus_tag="VE686_02255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016840292.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HYY83307.1"
                     /translation="MRAPDHPVLAKGDVLLAVEDVSLRFGGVKALTEVSFDIRKGEIR
                     AIIGPNGAGKTSMLNCINGFYHPSEGCITFKGKRRARMRPAEAARGGVARTFQNVALF
                     KGMSTLDNIMAGRSLKMKANFFWQLFRQGPALNEEVEHRRVVEDIIDFLEIEAIRKVP
                     VGKLPYGLQKRVELGRALAMEPDLLLLDEPMAGMNLEEKEDMSRFILDVNQQFGTTIA
                     LIEHDMGVVMDLSDRVVVLEYGRKIADGVPDEVRRDQRVIDAYLGVAH"
     gene            4430..>4576
                     /locus_tag="VE686_02260"
     CDS             4430..>4576
                     /locus_tag="VE686_02260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014287035.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid ABC transporter
                     permease"
                     /protein_id="HYY83308.1"
                     /translation="MDILYKVFVEPFALMGSAPDLLVQTLWEGLVSGVLYALIALGFV
                     LIFKA"
BASE COUNT          768 a         1606 c         1566 g          636 t
ORIGIN      
        1 gaactgcgcg tcgccgagcc cgagagcggc aaggtgctcg gcaccgagga gatcggcgtc
       61 atcgaggtca agggaccgaa cgtgttcaag ggctactggc gcatgcccga gaagaccgcg
      121 caggagttcc gcgccgaggg cttcttcatc acgggtgatc tcggcaaggt ggacgcgcgc
      181 ggctacgtcc acatcgtcgg gcgcggcaag gatctcatca tcaccggcgg ctacaacgtg
      241 tatccgaagg aggtcgagac cgagatcgac ctcattcccg gcgtcatcga gagcgccgtc
      301 atcggcctgc cgcacgccga tttcggcgaa ggcgtcgccg ccgtggtggt cgccgacccg
      361 gcgaaggcgc cgagcgaggc cgagatcctg caggcgctcg agggccggct cgcccgcttc
      421 aagcagccca agcgcgtgat gatcgtgccc gagctgcccc gcaacaccat gggcaaggtg
      481 cagaagaata tcttgcgcga cacctacgcc ggactgttcg ccaagggcgc ctgatcagcc
      541 cttgcgcgag aggacgacgc gcttcgtgcg gatgacccgc cgcacgaccg gcgcacaggt
      601 tgcgcgcaga ccgccccagg ggaggtcgac gtaggtctcg taggcgccgc cccagggcag
      661 tcccaggcag ccgcagccgt acgcggcctg gcgcacgatc gcagcctcgc ggcgcacgac
      721 ggtgacgcgc gggcgcgcca cgacctcgcg caccaccggc cgcgcgccga cgacccagac
      781 gaacggcccg tcgaccacgt cggccgccgc ggcgggccct gcgacgctcg ccagggcaac
      841 cgcggcggcg gcgaagaggc tgcggcggat caccatggcg acaccatcct gatcgtgccg
      901 gtgcgcaggt cgtagacgac gcgcgcggcg ggcggaggga acgccgccat ggcggcgcag
      961 gcgaggcagg gtccgacgcc cgggccagcg taggcgaccc ggatggggcg caccaccacc
     1021 ggcggcggcg ctgcgacgac gtacgccggc cgcgcgtagg cgacggggcc gcagggccag
     1081 cagccctgcg catcggcgtt cgccgacgcg aggaaagtcg cggcgctcag aaacagcaac
     1141 ggaagggggc gcatcgcagg ctccggcaac aaggcagccg cgagcgcggc catgtacccg
     1201 gaacaacgcc gaccgggcgt ctcacggcag gaactttcct tggccagggt aaacgatatg
     1261 cctagggcag ccttcggcgc gtcggctctc gatgccttgc gcgcgccggg ggggccgtgt
     1321 gacaacaggc ggccgcgcct cgccgcgcgg cgtcgcggac gcgggacgaa cctgcgccga
     1381 tcccgaggct tgcggctctc ccgagccgcg ggaggaaccc agccgtggcg ccgcagtcgg
     1441 cacgcgagga cacctttccg aagctgctcg tccggaacgc agaggtgcgg ccggcgcgca
     1501 ccgcgttccg gcacaaggac cggggcatct ggcagtcgtg gacctggggc gaggtcgccg
     1561 agatcgtgcg cgcctacgcg tcgggcctgc gcgccctcgg cctgacccgc ggcgccaaga
     1621 tcgccatcgt cggctacaac cgcccgcgcc tgtactggac catggcggcc gcgcagtggc
     1681 tcggcgccgt gccgatcccc gtctacgccg attccgtcgc cgacgagatg gccttcgtgc
     1741 tcgcccacgc cgaggtcacg cacgcggtcg cgcaggacca ggagcagatc gacaagctcc
     1801 tctccatcgc cggccaggtg ccgcttctga agcacctcct ctacgacgag gagcgcggcc
     1861 tgcgcgacta cgaccacacg cacctgcacc ccatcgacca cgtcgtcgag gagggccggc
     1921 gccgccttgc cgacgatccc gtcgagccgc aggcgatcga gcgcgagatg caggccggca
     1981 ggggctcgga cctcgccatc atcctctaca cctccggcac cacgggacgg ccgaagggcg
     2041 tcatgctgtc gtacgacaac gtcatcgccg cgagcgagat cggctgcggc ttcgacaagc
     2101 tcgccgaggg cgacgagatc atcgcctacc tgccgatcgc ctgggtcggc gaccacatct
     2161 tctcctacgc gcaggcgatc ctcgtcggcc tgtgcgtcaa ctgccccgag agccccgaca
     2221 ccgttgtcga cgaccgccgt gaggtcggca ccacctacgc cttcgcgccg ccgcgcgtgt
     2281 tcgagaccat gctgacgctc accatggtgc gcatggagga cgcgagcgcg ctgaagcgcc
     2341 gggtcttcaa gttcttcatc gagcacgcca accgggtcgg cgagaagatc ctgaacggcg
     2401 agcgcggcgt gacgctgtgg gaccgcttcg tctaccgcct cggcgacctc cttgtgtacg
     2461 cgccgctgcg caaccgcttc gggctcacaa gcattaaggt cggctacacc gccggcgagg
     2521 ccatcggccc ggacatcttc aagttctacc ggtccattgg agttaacttg aagcagctct
     2581 acggccagac cgaagccgcc gtctacgtga ccatgcagcc ggacggagaa atccgcgccg
     2641 acacggtcgg ccgaccggcg ccgcaggtcg agatcaggat cgacgacagc ggagaggtgc
     2701 tctatcgctc gccgggcgtc ttcctcggtt actacaagga cgccgagaag acggccgaga
     2761 cgaagacgcc cgacggcttc gtgcgctccg gcgacgccgg cttcttcgat acggacgggc
     2821 acctcaagat catcgaccgc gccaaggatg tcgggcgtct gcgcgacggc ggcctgttcc
     2881 cgccgaagta cgtcgagaac aagctcaagt tctacccgaa catcaaggag gcggtcgcgt
     2941 tcggggccga gcgcgacttc gttgcctgct tcatcaacat cgacctcgtg gccgtcggca
     3001 actgggccga gcgcaacggc gtcacctacg gctcgtacca ggagctcgcc ggccacccgc
     3061 tcgtctacga catgatcggc aagcacgtcg acgaggtgaa ccgctccctc gcgcgcgagc
     3121 cgcgcatggg cggcgcccag gtgcgccgct tcctggtgct gcacaaggag ctcgatcccg
     3181 acgacggcga gctcacgcgc acgcagaagg tccgccgcgg cttcatcgcc gagcgctacg
     3241 cgcctctgat ccaggccctc tacgacggca cgagcgaggc cgacatatcc accgaggtca
     3301 ccttcgagga cggccgcaag ggcgtcatcg ccgcccgcgt gaagatccgc gacatgaagg
     3361 tctacccggt cgaggccgcg gcgccggtgc tggaggcggc ggagtgaaga gtgctggcgg
     3421 tcgtgtgcgg atcctcaccc gcgaagcggg ggagggggac catgcgcagc atggtggagg
     3481 gggcacgacc gggcgcgcca tcctgcgatc gagccgccgg cgcgcagctg gagccgacgg
     3541 cgcgtggact tgccccctcc accgcctgcg gcggtccccc tcccccgctt cgcgggtgag
     3601 gatcaggtgc ggcggcgcat gagggcaccc gatcatccgg tgctggccaa gggcgacgtg
     3661 cttctcgccg tcgaggacgt gtcgctgcgc ttcggcggcg tcaaggcgct gacggaagtc
     3721 tcgttcgaca tccgcaaggg cgagatccgc gccatcatcg gcccgaacgg ggcgggcaag
     3781 acctcgatgc tcaactgcat caatggcttc taccacccga gcgagggctg catcaccttc
     3841 aagggcaagc gccgcgcccg catgcgcccg gcggaggccg cacgcggcgg ggtcgcgcgc
     3901 acgttccaga acgtcgccct gttcaagggc atgtcgacgc tcgacaacat catggcgggg
     3961 cgctcgctca agatgaaggc gaacttcttc tggcagctgt tccgccaggg gccggctctg
     4021 aacgaggagg tggagcatcg ccgcgtcgtc gaggacatca tcgacttcct cgagatcgaa
     4081 gccatccgca aggtgccggt cggcaagctc ccctacggcc tgcagaagcg cgtggagctc
     4141 ggccgcgcgc tcgccatgga acccgacctc ctgctcctcg acgagcccat ggcgggcatg
     4201 aacctcgagg agaaggagga catgtcgcgc ttcatcctcg acgtgaacca gcagttcggc
     4261 accaccatcg cgctgatcga gcatgacatg ggcgtggtga tggacctgtc cgaccgggtc
     4321 gtcgtgctcg agtacgggcg caagatcgcc gacggcgtgc ccgacgaggt ccgccgcgac
     4381 cagcgcgtca tcgacgccta tctcggcgtc gcgcattagg tcggcggcga tggacatcct
     4441 ctacaaggtc ttcgtcgagc cgttcgcgct catgggctcc gcgccggacc tgctggtgca
     4501 gacgctctgg gaaggcctcg tttcgggcgt gctctatgca ctcatcgccc tcggcttcgt
     4561 gctgatcttc aaggct
//
LOCUS       DASQWN010000122         2819 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1409262, whole genome shotgun sequence.
ACCESSION   DASQWN010000122 DASQWN010000000
VERSION     DASQWN010000122.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2819)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2819)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2819
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1409262"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2266)
                     /gene="rnr"
                     /locus_tag="VE686_02265"
     CDS             complement(<1..2266)
                     /gene="rnr"
                     /locus_tag="VE686_02265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007565739.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008997 - ribonuclease R activity
                     [Evidence IEA];
                     GO_process: GO:0006401 - RNA catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease R"
                     /protein_id="HYY83309.1"
                     /translation="MPKKSKAHEPALPSREEVLAYIASAEKKVGKREIARAFNIHGDD
                     RIRLKEMLRDLEGDGALSRRGKRVQQPGRLPHVVVADIKSRDRDGELIAEPEEWDAET
                     FGPAPKIVVTIPRKPKPGMPAPGVGDRVLLRAEPLRDEGPRRYSGRVVKIIGREKQQV
                     LGIYRALPEGAGGRLVPVEKRSQGREILINPGDEGDAKDGDLVAATVKKGGGQYGLPH
                     AKVQDRLGSLKSEKAVSLIAIHAHNIPHVFSPDVLAEADKAQAASLKGREDWRQLPLV
                     TIDPADAKDHDDAVHAVPDEDPENRGGFIVTVAIADVAAYVRPGSALDREALERGNSV
                     YFPDRVVPMLPERISNDLCSLRPLEDRPALAVRMTIGADGRKKRHSFHRVMMRSAAKL
                     SYQQAQAAIDGRTDDTTAPILEPVLRPLWAAYVCVRAARDVREPLDLDLPERKIILKP
                     DGTVDRVLVPERLDAHRLIEEFMILANVAAAESLEKAGSPLVYRVHDEPSLEKMRAFG
                     EVLASIGIKLPKAGALKPALFNRILEMVQGSEHQTLVNEVVLRSQAQAEYAAENYGHF
                     GLNLRRYAHFTSPIRRYADLLVHRALISALKLGGDGLPASTTTAQLAEIAARISTAER
                     RAMAAERETVDRLIAHHLADRIGDTFNGRISGVTRSGLFVKLADTGADGFVPASTVGA
                     DYYRFDEGKHALVGDRTGETYRLGDPVEVKLVEAAPIAGALRFELQSEGKFTGKARSR
                     GARNAHEKGRGAGTK"
     gene            complement(2584..>2819)
                     /gene="glnA"
                     /locus_tag="VE686_02270"
     CDS             complement(2584..>2819)
                     /gene="glnA"
                     /locus_tag="VE686_02270"
                     /EC_number="6.3.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017964276.1"
                     /note="forms a homododecamer; forms glutamine from ammonia
                     and glutamate with the conversion of ATP to ADP and
                     phosphate; also functions in the assimilation of ammonia;
                     highly regulated protein controlled by the
                     addition/removal of adenylyl groups by adenylyltransferase
                     from specific tyrosine residues; addition of adenylyl
                     groups results in inactivation of the enzyme; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="glutamine synthetase"
                     /protein_id="HYY83310.1"
                     /translation="MDKDLYDLPPRELKKIPTVCGSLREALQSLDKDRAYLRAGGVFN
                     DDFIDSYIELKMAEVQRFEMTPHPLEFVMYYSA"
BASE COUNT          384 a          895 c         1058 g          482 t
ORIGIN      
        1 ccttcgtgcc ggcaccccga cccttctcgt gggcgttcct cgctccgcgg gaccgggcct
       61 tgccggtgaa cttgccctcg gactgcagct cgaagcgcag cgcgccggcg atcggcgcgg
      121 cttccacgag cttcacctcg acggggtcgc cgagccggta ggtctcgccc gtgcggtcgc
      181 cgacgagggc gtgcttgccc tcgtcgaagc ggtaatagtc ggccccgacc gtgctcgccg
      241 gcacgaagcc gtcggcgccc gtgtctgcga gcttcacgaa cagcccagac ctggtcacgc
      301 ccgagatgcg gccgttgaag gtgtcgccga tgcggtcggc gaggtggtgg gcgatgaggc
      361 ggtccacggt ctcgcgctcg gccgccatgg cgcgccgctc ggccgtcgag atgcgcgccg
      421 cgatctcggc gagctgcgcc gtcgtggtgc tggccggcag gccatcgccc ccgagcttga
      481 gggcggagat gagcgcgcgg tgcacgagga ggtcggcgta gcgtcggatg ggcgaggtga
      541 agtgggcgta gcggcgcagg ttgaggccga agtggccgta gttctcggcg gcgtattcgg
      601 cctgcgcctg cgagcgcagc acgacctcgt tgacgagggt ctggtgctcg gagccctgca
      661 ccatctcgag gatgcggttg aacagagcgg gcttgagcgc gccggccttg ggcagcttga
      721 tgccgatgga ggcgagcacc tcgccgaacg cgcgcatctt ctcgagcgag ggctcgtcgt
      781 ggacccggta gacaagaggc gagcccgcct tctcgaggct ttccgcggcg gcgacgttgg
      841 cgaggatcat gaactcctcg atcagccgat gggcatcgag gcgctcgggc accagcaccc
      901 ggtcgacggt gccgtccggc ttcaggatga tcttgcgctc ggggaggtcg agatcgaggg
      961 gctcgcgcac gtcgcgggcg gcgcgcacgc agacgtaggc ggcccagagt gggcgcagga
     1021 cgggttcgag gatcggcgcc gtggtgtcgt cggtgcgccc gtcgatggcg gcttgcgcct
     1081 gttggtacga gagctttgcg gccgagcgca tcatcacgcg gtggaagctg tggcgtttct
     1141 tgcggccgtc ggccccgatg gtcatgcgca cggcgagggc agggcggtcc tcgagcggac
     1201 gcagggagca caggtcgttg gagatgcgct ccggcagcat cggcacgacc cggtcgggga
     1261 aatagaccga gttgccgcgc tccagcgcct cgcggtcgag ggccgagccg gggcgcacgt
     1321 aggcggcgac gtcggcgatc gcgaccgtga caatgaaccc gccgcggttc tcggggtctt
     1381 cgtccggcac ggcgtgcacg gcgtcgtcgt ggtccttggc gtcggcggga tcgatcgtga
     1441 cgagcggcag ctggcgccag tcctcgcggc ctttcaggct tgcggcttgc gccttgtcgg
     1501 cctcggccag gacgtcgggc gaaaacacgt gcgggatgtt gtgggcgtgg atggcgatca
     1561 ggctgaccgc cttttcggac ttcagcgacc ccaggcggtc ctgcaccttg gcgtgcggca
     1621 ggccgtactg gccgccgccc ttcttgaccg tcgcggcgac gaggtcgccg tccttggcgt
     1681 caccctcgtc gccggggttg atcagaatct cgcggccttg cgagcgcttc tcgacgggta
     1741 cgaggcggcc gcctgcgcct tcgggcaggg cgcggtagat gccgagcacc tgctgcttct
     1801 cgcggccgat gatcttcacc acgcggcctg agtaccgtcg cgggccctcg tcgcgcaggg
     1861 gctcggcgcg aagcagcacc cggtcgccta cgccgggcgc cggcatgccg ggctttggct
     1921 tgcgaggtat ggtgacgacg atcttgggcg ccggaccgaa ggtctcggca tcccattcct
     1981 cgggctcggc gatgagctcg ccgtcgcggt cgcgggactt gatgtcggcg acgaccacgt
     2041 gcggcaggcg ccccggctgc tgcacgcgct tgccgcgtcg ggaaagggcg ccgtcgcctt
     2101 cgaggtcccg cagcatctct ttcaggcgga tgcggtcgtc gccgtggatg ttgaaggcgc
     2161 gcgcgatctc gcgcttgccg accttcttct cggcgctcgc gatataggcg aggacctcct
     2221 cccgggaggg aagggcgggc tcatgggctt tcgatttctt gggcaagggg ctctcggggc
     2281 agcgtcctac taccatcggg ccacgttttc gggccggaga gaagacgcgc gggaattcgc
     2341 tttcgatcca tgagatgggg atcatggccc ggaaaagcaa ccggtggata gccgatggcg
     2401 atggtgcacg gtcgtgccgt cgtcacgatg aagacgcgtg cccgactgcc cgagggaagg
     2461 ccggccctaa gctcatgctg agactgcgcc tgctgcgcgg gcaaaaaaag ccggagcccg
     2521 agggctccgg ctggagtgcg gccgcggtcc gtcgcggccg ggaggaagct cccgatggcc
     2581 gtctcaggcc gagtagtaca tgacgaactc gagcgggtgc ggcgtcatct cgaagcgctg
     2641 cacctcggcc atcttcagct cgatgtacga gtcgatgaag tcgtcgttga atacgccgcc
     2701 ggccctgagg taggcgcggt ccttgtcgag gctctgcagg gcctcgcgca agctgccgca
     2761 gaccgtcggg atcttcttca gttcgcgcgg gggcaggtca tagaggtcct tgtccatgg
//
LOCUS       DASQWN010000123         2426 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1012274, whole genome shotgun sequence.
ACCESSION   DASQWN010000123 DASQWN010000000
VERSION     DASQWN010000123.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2426)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2426)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2426
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1012274"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(143..631)
                     /locus_tag="VE686_02275"
     CDS             complement(143..631)
                     /locus_tag="VE686_02275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018094680.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DinB family protein"
                     /protein_id="HYY83311.1"
                     /translation="MKSTFTMLAGYNAWANARVYDAAGQLSDAEYRADRGAFFKSMHG
                     TLNHLLVTDRLWLRRFTGEGDAPNRLDAILFEEFFELRAARKSEDARIGAYIDGLTED
                     RIAAMFRYSTVTNPREIEQPLGPALTHFFNHQTHHRGQVHCMLTQAGGQPHATDLPQT
                     PE"
     gene            complement(779..>2426)
                     /locus_tag="VE686_02280"
     CDS             complement(779..>2426)
                     /locus_tag="VE686_02280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019902988.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HYY83312.1"
                     /translation="RPLMARNMGLVHAVAPRDGIVQAAKDWIRGGGSAEAPWDQKGYK
                     LPSNKVFSAAGMQIWPPANAIYRRETQDNYPAIRAILESVYQGLQLPMDLALKVESRW
                     FAKILRSKEAAAMIRTLFISMQDLNKGARRPKDVPPTSLKKVGVIGAGFMGASVAYVT
                     ANAGLEVVLIDRDVEAAEKGKAHSHKLMSDQIMKGRAKTADRDALLARITASADYDDL
                     KDCDLVIEAVFEDPKVKAEVIGKVEAAIRPDCIFASNTSTLPISGLAESSRNAGQFIG
                     IHFFSPVERMMLVEIIRGRETGERALAVALDYVRAIKKTPIVVNDSRGFFANRCVGAY
                     ILEGHLMLSEGVPAPMVENVARMAGMPVGPLSLNDEVAVDLALKIVKATKAQVGEGAV
                     NPAQEKLLVAMVEQHGRLGRKNKKGFYDYPEQGQKRLWPGLKDLAAAQLDPDGIDVQE
                     LKERFLVAQALEAARVYGEGVVTDPREADVGSILGFGFAPYTGGVLSYIDGMGAKRFV
                     ALARKLEAKHGKRFTPPKILLDMAETGGSFYGRAQERQAA"
BASE COUNT          371 a          796 c          838 g          421 t
ORIGIN      
        1 ggaggcgacg aaggctgagg gcaaaccgaa gcgggctgtg cctcagggtc aaaagcgcca
       61 ggaccgacaa gcgacgtcgt aatcaggagg atcgggcgaa cggccctccc gcctttctca
      121 agtcctggat ggaggcgaac cgttattccg gcgtttgggg aaggtctgtt gcgtgcggct
      181 ggccgcctgc ttgggtgagc atgcagtgaa cctgacctcg gtggtgggtc tggtgattga
      241 agaagtgcgt gagcgccggg ccgaggggct gctcgatctc gcgcgggttg gtgaccgtcg
      301 agtagcggaa catcgccgcg atgcggtctt ccgtgagccc gtcgatatac gccccgatgc
      361 gcgcgtcctc ggacttgcgc gcggcgcgca gctcaaagaa ttcctcgaac aggatggcgt
      421 cgagccggtt cggcgcgtcg ccctcccccg tgaagcgccg cagccacagc cggtcggtga
      481 cgagcaggtg gttgagggtg ccgtgcatgg acttgaagaa ggcgccgcga tcggcgcggt
      541 actcggcatc cgagagctgc ccggcagcgt cgtagacgcg ggcgttggcc caggcgttgt
      601 agccggcgag catggtgaac gtcgacttca tcatcagcct ccgtggtcct cgccccaaac
      661 ccgtcatccc ggggctcgcg aagcgagaac ccgggatccc gatcaggata gggcggcaga
      721 cgcgggacgg gatcccggct cggcgctgtc gcgccgtccg ggatgacggc gccctctcct
      781 acgccgcctg cctctcctgc gctcggccgt agaacgagcc gcccgtctcg gccatgtcga
      841 ggaggatttt tggcggggtg aagcgcttgc cgtgcttcgc ctcgagcttg cgggcgaggg
      901 ccacgaagcg cttcgcgccc atgccgtcga tgtaggacag caccccgccc gtataggggg
      961 cgaagccgaa gccgaggatc gagccgacgt cggcctcgcg cggatcggtg acgacgccct
     1021 cgccgtagac ccgcgcggcc tcgagcgcct gcgccacgag gaagcgctcc ttgagctcct
     1081 ggacgtcgat gccgtccgga tcgagctggg cggcggcgag gtccttcagg cccggccaca
     1141 ggcgcttctg gccctgctcg ggatagtcgt agaagccctt cttgtttttg cgcccgaggc
     1201 ggccgtgctg ctcgaccatg gcgacgagga gcttctcctg cgccgggttc acggcgccct
     1261 cgccgacctg cgccttcgtc gccttgacga tcttgagggc caggtcgacc gcgacctcgt
     1321 cgttgagcga cagcgggccg accggcatgc cggccatccg ggcgacgttc tcgaccatgg
     1381 gcgccggcac gccctcggag agcatcaggt ggccctcgag gatgtaggcg ccgacgcagc
     1441 ggttggcgaa gaagccgcgc gagtcgttga cgacgatcgg cgtcttcttg atcgcgcgca
     1501 catagtccag cgccaccgcg agcgcgcgct cgccggtctc tcggccgcgg ataatctcga
     1561 ccagcatcat gcgctccacc ggggagaaga agtggatgcc gatgaactgg cccgcattcc
     1621 gactgctttc cgccagaccg ctgatcggca gggtcgaggt gttggaggcg aagatgcaat
     1681 ccgggcggat cgccgcctcc accttcccga tcacctcggc cttgaccttg ggatcctcga
     1741 acaccgcctc gatgacgagg tcgcaatcct tcaggtcgtc gtagtcggcc gatgccgtga
     1801 tgcgagcgag cagcgcgtca cggtccgccg tcttggcgcg gcccttcatg atctggtcgg
     1861 acatgagctt gtgcgaatgc gccttgccct tctcggccgc ctccacgtcg cggtcgatga
     1921 gcacgacctc gaggcccgca ttggccgtga cgtaggccac gctcgcgccc atgaagcccg
     1981 cgccgatcac gcccactttc ttgagactcg tgggcggaac gtccttcggg cggcgcgcgc
     2041 ccttgttcaa gtcctgcatg gagatgaaga gcgtgcggat catcgccgcc gcttccttcg
     2101 agcgcagaat cttggcgaac cagcgcgatt ccaccttcag cgccagatcc atcggcagct
     2161 ggaggccctg atagacggat tcgaggatcg cgcggatcgc cggatagttg tcctgcgttt
     2221 cgcggcggta gatggcgttt gcaggcggcc agatctgcat gccggccgcg gagaacacct
     2281 tgttggaggg cagcttgtag cccttctggt cccagggcgc ctccgccgag ccgccgcctc
     2341 tgatccagtc cttcgccgcc tgcacgattc cgtcgcgggg ggcgaccgcg tggacgaggc
     2401 ccatgttgcg cgccataagg gggcgg
//
LOCUS       DASQWN010000124         5142 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_505885, whole genome shotgun sequence.
ACCESSION   DASQWN010000124 DASQWN010000000
VERSION     DASQWN010000124.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 5142)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5142)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5142
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_505885"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1230)
                     /locus_tag="VE686_02285"
     CDS             complement(<1..1230)
                     /locus_tag="VE686_02285"
                     /inference="COORDINATES: protein motif:HMM:NF014758.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin cofactor-binding domain-containing
                     protein"
                     /protein_id="HYY83313.1"
                     /translation="MIPNTLPKSLVDNPRLDAWVSFEAGGKVRVATGKVELGQGIVTA
                     LAQIAAEELDVAPERLRIVSGDTGHSPNEGYTAGSLSVEGSGAAIRLACAEVRHLFVA
                     RAAEALGMEPGRITVEDGRFLRDGVETGFDYWTLAPQIDLSRDATGSAPAKSPASFRI
                     VGTSQPRLDLPEKLFGAPFVHDLAPPGLLHARVLHRPWGGARLASLDEARLRRAAKGA
                     FEILRDGDFLAFVAEEEAVASAAVTAARPLVVWDGGTPVSDEAATSPWLTTRVTSARV
                     VSTGAALPASHLEATYTRPYTAHGSIGPSCAMALYEDDRLTVWTHSQGVFFLRTSLSA
                     ALGLDPERITLVHRQGAGCYGHNGADDAAFDAAFIAMRRPGRPVRVLWMREDELGSSP
                     AGAAMIVKVASGLGADSR"
     gene            complement(1227..1712)
                     /locus_tag="VE686_02290"
     CDS             complement(1227..1712)
                     /locus_tag="VE686_02290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011088787.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:0051537 - 2 iron, 2 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="(2Fe-2S)-binding protein"
                     /protein_id="HYY83314.1"
                     /translation="MEGRFDIAVNGVSRTLDADGDTALLYVLRNALGLRGSRFGCGHE
                     QCGACMVLVDGNPSYACTLPVSAVSGKRVTTDEGLGTAELPHPLQQAFLAEQAGQCGY
                     CLSGILISAAALLDRNPNPSRADVAAALEPHLCRCGAHNRIVRAVLRAATALRGEAVS
                     A"
     gene            1936..2580
                     /locus_tag="VE686_02295"
     CDS             1936..2580
                     /locus_tag="VE686_02295"
                     /inference="COORDINATES: protein motif:HMM:NF013053.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine hydrolase"
                     /protein_id="HYY83315.1"
                     /translation="MRIGIERPRAAIVTIDLHRGHLDPAVATMPASPEIAALLVDNNR
                     RLLDSARPLGIPVVHCVTTYRDVEEIRANPFWRTRAEDPNATRKNVLRHNLAGSPGCT
                     IMPGLQHPTDFVVETKKRYDCFQGTDLDTTLRTHGIDTVLITGINTNSCVLATVCAAN
                     VRDYAVIVIEDCVNTMDSPAHHEAALMCVRTAFGFVASSAEALELARSWTAANA"
     gene            2605..3492
                     /locus_tag="VE686_02300"
     CDS             2605..3492
                     /locus_tag="VE686_02300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012330385.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide deacetylase family protein"
                     /protein_id="HYY83316.1"
                     /translation="MADPTLPRDRVAYSAIVDRPKLTLPQDARIVVWTIVNLEVWDIS
                     RPMARQVIPAPTGQVLLPDVPNWSWHEYGMRVGIWRFFDLYRRLGIRPTLSINARVCE
                     DYERVAAEARDAGWEFMGHAYEQMPIHKVEDQRGMIQRSMDGLERFTGKRPVGWLGPG
                     LTQTYDTPELLAEAGVKYIGDWVYDDEPTVIDTAKGPLVTLPYSVELNDIPMMIVQHH
                     ESEYWKRRAIDQFDRLWKEGAERPKIMAMAIHPYISGQPHRIRYLEEVYDHIAGHDGV
                     LHWNGAEIYDWYNGVAKVH"
     gene            3492..4193
                     /locus_tag="VE686_02305"
     CDS             3492..4193
                     /locus_tag="VE686_02305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012045590.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="fumarylacetoacetate hydrolase family protein"
                     /protein_id="HYY83317.1"
                     /translation="MSRSPVPAPEGVTLPIAGGSDVFPVRRIYLVGRNYLEHVREMKE
                     GADERDPPFFFQKPRDAIMPDGATVPYPSATQSLHYELELVAAIATGGRNIPSARALE
                     HVYGYAIGIDLTRRDLQTIAKDKGWPWEMGKSFDHSAPCGPVHPAGDVGHGPRTIALK
                     VNGALRQNSTTAKMTWSVSEIISKLSEQYELAAGDIIYTGTPEGVGAVVPGDRLEGTI
                     EGLGTLTISIGPSKA"
     gene            4199..5077
                     /locus_tag="VE686_02310"
     CDS             4199..5077
                     /locus_tag="VE686_02310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010682211.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide deacetylase family protein"
                     /protein_id="HYY83318.1"
                     /translation="MLPTERIAYSPITDRPKLTLPGGARLAVWVIVNVEEWDINKAMP
                     RTVLTPPAGGSPMPDIPNWAWHEYGNRVGFWRMLEVFDDFAVPAVLAINGSAINAYEP
                     IARAALDRKWEFMGHGFTQLNMQKVEDEAGDIAKTTAAIADFTGKRPRGWLGPGLTET
                     WVTPDLLVEAGYDYVCDWVLDDQPTVLETRSGPIVNVPYTQECNDVAMMLIQHHKASE
                     YFDRASDQFDQIYADAEDSARVMALVLHPYIMGAPHRLKYFRRIFERIRSRDDVLFWT
                     GEQILDWYRSQQPLRA"
BASE COUNT          911 a         1784 c         1667 g          780 t
ORIGIN      
        1 ccggctgtcg gcgccgaggc cggacgcgac cttcacgatc atcgctgcgc cggccggaga
       61 cgacccgagc tcgtcctcgc gcatccacag gacgcgcacg gggcggccgg gccggcgcat
      121 ggcgatgaag gccgcgtcga aggccgcgtc gtcggcgccg ttgtggccgt agcaccccgc
      181 cccttgacgg tgcacgagcg taatccgctc cggatcaagc ccaagcgcgg ccgataagga
      241 cgtgcgcagg aagaagacgc cttgcgagtg ggtccacacg gtaagacgat cgtcctcgta
      301 cagcgccatc gcgcaggatg ggccgatgga gccgtgcgcc gtgtagggtc tcgtataggt
      361 cgcctcgagg tgcgaggccg gcagggcggc gccggtgctc acgacgcggg cgctcgtcac
      421 ccgggtcgtg agccatgggc tcgtcgcagc ctcgtccgac accggcgtgc cgccgtccca
      481 gacgacaagc ggccgcgccg ccgtcacagc cgctgaggca accgcctcct cctcggccac
      541 gaaggcgagg aagtctccgt cgcgcaggat ctcgaacgcg cccttggcag cccggcgcaa
      601 gcgggcttca tcgaggctcg cgagcctggc gccgccccat ggacgatgca gcacgcgtgc
      661 atgcagcagg cccgggggcg caaggtcgtg cacaaaaggc gcgccgaaaa gcttctcggg
      721 aaggtcgagg cgcggctggc tcgtgccgac gatgcggaac gacgccgggc tcttcgccgg
      781 cgcactcccg gtcgcatcgc ggctgaggtc gatctgcggc gccagggtcc agtagtcgaa
      841 tcccgtctcc acgccgtcgc gcaggaagcg cccgtcctcg acggtgatcc tgcccggctc
      901 catgccgagc gcctcggccg cgcgcgcgac gaagaggtgg cgcacctccg cgcacgcgag
      961 gcggatcgcg gcccccgagc cttcgaccga gaggctgccc gccgtatacc cctcgttggg
     1021 gctgtggccc gtgtcgcccg agacgatgcg caggcgctcg ggcgcgacat cgagttcctc
     1081 agcagcaatt tgggcaagcg ccgtcacgat gccttggccg agctcaacct tgcccgtcgc
     1141 gacgcgcacc ttgccgccgg cctcgaagct gacccaggca tcaaggcggg ggttgtcgac
     1201 gaggctcttc gggagcgtgt tcgggatcat gccgacaccg cctcgccgcg gagcgcagtc
     1261 gcggcgcgca gcacggcgcg cacgatgcgg ttgtgggcac cacagcggca caggtgcggc
     1321 tccagggccg ccgccacgtc ggcccggctc ggattcggat tcctgtcgag caacgcggcc
     1381 gcggagatga ggatgcccga caggcaatac ccacattgcc cggcctgctc ggcgaggaag
     1441 gcctgctgca gcgggtgcgg aagctccgcc gtgccgaggc cctcgtcggt cgtgacgcgt
     1501 ttccccgaga cggccgacac cggaagggtg caggcgtaac tcgggttgcc atccaccagg
     1561 accatgcagg cgccgcactg ctcgtggccg cagccgaagc gggagcccct caggccgagc
     1621 gcattgcgca gcacatacag gagcgccgtg tcgccgtcgg catcgagtgt ccgcgacacg
     1681 ccgttcaccg cgatgtcgaa acgaccttcc atctcgtctc cttgagccga cgcgtggctc
     1741 gatggctgag cgatgcctct tggaagatca cccaccgacc ggggaagacg caaccggagc
     1801 ccccgctcaa ggaagccacg tgcagctggc cgagcctccc cgctgcacgc tgcagcatgc
     1861 atttgcaaag cctatagcgg ctgctacgct ttcagcgcac tccgcaaacg ggcgcgaaga
     1921 acgggttggg gaaccttgag gatcggcatc gagcgcccgc gggccgctat cgtcacgatc
     1981 gacctccatc gcgggcatct cgatccagcg gttgcgacga tgccggcgtc ccccgaaatc
     2041 gcggcgctgc tcgtcgacaa caatcgccga ctactcgatt cagcacggcc cctcggcatc
     2101 ccggtcgtcc attgcgtcac cacgtaccgg gacgtcgagg aaatccgcgc gaacccgttc
     2161 tggcgcacga gggccgagga tccgaacgcg acgcggaaga acgtgcttcg ccataatctc
     2221 gcaggctcgc cgggctgcac catcatgccc gggctccagc atccgaccga cttcgtcgtc
     2281 gaaaccaaga agcgctacga ttgctttcag ggcaccgacc tcgacaccac gcttcgcacg
     2341 cacggcatcg acaccgtcct catcacagga atcaacacga acagctgcgt cctggcgacc
     2401 gtgtgcgccg cgaatgtgcg cgactacgcc gtcatcgtga tcgaggactg cgtgaacacc
     2461 atggactcgc ccgcccatca cgaggcggcc cttatgtgcg tccggacggc cttcggattc
     2521 gtggcgagtt ccgccgaggc gctggaactc gcgcgttcgt ggacggcagc gaacgcctag
     2581 acgctgcaat cgaaagagag aggcatggca gatccgacct taccaaggga ccgcgtcgca
     2641 tattcggcga tcgtcgatcg tccgaagctg acgctccccc aagacgcgcg catcgtcgtc
     2701 tggaccatcg tcaacctgga ggtctgggac atctcgcgtc ccatggcgcg ccaggtgatc
     2761 ccggcgccga ccggccaggt gctgctcccc gacgtgccga actggagctg gcacgaatac
     2821 ggcatgaggg tcgggatctg gcggttcttc gatctctatc ggcgcctcgg catccggccg
     2881 acgctctcga tcaatgcgcg cgtgtgcgag gactacgaac gggtcgcggc ggaagcgcgc
     2941 gacgcgggct gggaattcat gggccacgcc tacgagcaga tgcccatcca taaggtcgaa
     3001 gaccagagag gcatgatcca gcgctcgatg gacggtctcg agcgcttcac gggcaagcgc
     3061 ccggtcggct ggctcggccc cggcctgacg cagacctacg acacgccgga gctcctggcc
     3121 gaggcgggcg tgaaatacat cggcgactgg gtctacgacg acgagccaac ggtgatcgac
     3181 accgccaagg gaccgctggt gacgctgccc tattcggtcg agctcaacga catcccgatg
     3241 atgatcgtgc agcaccacga atcggaatac tggaagcgtc gcgccatcga tcagttcgac
     3301 cggctctgga aggaaggtgc cgagcgccca aagatcatgg caatggcgat ccacccgtac
     3361 atctcgggcc agccccaccg catccggtac ctcgaggaag tttacgacca catcgccggg
     3421 cacgacggcg tgctgcactg gaacggtgct gagatctacg actggtacaa cggcgtcgca
     3481 aaggtgcatt gatgagtcgc agtcccgtcc ctgccccgga aggcgtcacg ctgccgatcg
     3541 ccggtggatc ggacgtgttt cccgtccggc ggatctatct cgttggccgc aactatctcg
     3601 agcacgtgcg cgagatgaag gagggcgccg acgagcgcga cccgccgttc ttctttcaga
     3661 agccccgcga cgccatcatg cccgatgggg caaccgtgcc gtatccgagc gccacacaga
     3721 gtctgcacta cgagctcgag ctcgtggcgg cgatcgccac cggcgggcgc aatatcccga
     3781 gcgctcgggc gctcgaacac gtctacggct acgccatcgg catcgacctc acccggcgcg
     3841 atctacagac catcgccaag gataagggct ggccctggga gatgggaaag tccttcgacc
     3901 actcggcccc gtgcgggccg gttcacccgg ccggcgacgt gggccacggg cctcgcacga
     3961 tcgccctcaa ggtcaacggc gccctgcgcc agaactcgac gaccgccaag atgacctggt
     4021 ccgtctcgga gatcatctcc aagctatcgg agcagtacga gctcgccgcc ggcgacatca
     4081 tctacaccgg cacgccggaa ggggtgggcg ccgtggttcc cggcgaccgt ctcgagggca
     4141 cgatcgaggg gcttggcacg ctcaccatca gcatcggacc gtcgaaggct tgaagcgcat
     4201 gctaccgaca gaacgcatcg cctattctcc gatcaccgat cgcccgaagc tgacgcttcc
     4261 cgggggtgcc cggctcgccg tctgggtcat cgtcaacgtc gaagaatggg acatcaacaa
     4321 ggccatgccg cgcacggtgc tgacgccgcc ggcgggcggc tcgccgatgc ccgacattcc
     4381 caattgggcc tggcacgagt acggcaaccg ggtcgggttc tggcggatgc tcgaggtgtt
     4441 cgacgacttc gccgtcccgg cggtgctcgc catcaacggc tcggccatca acgcctatga
     4501 gccgatcgcc cgggccgcac tcgaccgcaa atgggagttc atgggtcacg gcttcaccca
     4561 gctcaacatg cagaaggtcg aggacgaggc aggcgacatc gccaagacga ccgcggccat
     4621 cgccgacttc accggcaagc gcccccgcgg ctggctcggc cccggcctca cggagacgtg
     4681 ggtcacgccc gacctcctcg tggaggcggg ttacgactac gtttgcgact gggtcctgga
     4741 cgatcagccg acggtgttgg agacgcgctc cggcccgatc gtcaacgtgc cctacaccca
     4801 ggagtgcaac gacgtcgcca tgatgctgat ccagcatcac aaagcgtcgg aatatttcga
     4861 ccgtgcgagc gaccagttcg accagatcta tgccgacgcc gaagactccg cgcgggtgat
     4921 ggccttggtg ctgcacccct acatcatggg cgcgccgcac cggctgaagt acttccgccg
     4981 catcttcgag cgcatccgga gccgagacga cgtcctgttc tggaccggcg agcagatcct
     5041 cgactggtat cggtcgcagc agccgctccg ggcctagtcg tccaagcgat gtccctcttc
     5101 cagcttctca acgggctgac cttcgccgca ctcctcttcg tg
//
LOCUS       DASQWN010000125         3136 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1012458, whole genome shotgun sequence.
ACCESSION   DASQWN010000125 DASQWN010000000
VERSION     DASQWN010000125.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 3136)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3136)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3136
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1012458"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..290)
                     /locus_tag="VE686_02315"
     CDS             complement(<1..290)
                     /locus_tag="VE686_02315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012334594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-3-methyladenine glycosylase 2 family
                     protein"
                     /protein_id="HYY83319.1"
                     /translation="MTIILDSDRVLNEGVRALKRKDPVMKRIIGEGATPPLRKRDPGF
                     EGLAGIIVSQQLSVASAGAIWARFKTRFDPLTPEAVLAASDDELRGPGLSAP"
     gene            289..1215
                     /gene="gluQRS"
                     /locus_tag="VE686_02320"
     CDS             289..1215
                     /gene="gluQRS"
                     /locus_tag="VE686_02320"
                     /EC_number="6.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004118065.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004812 - aminoacyl-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006418 - tRNA aminoacylation for protein
                     translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA glutamyl-Q(34) synthetase GluQRS"
                     /protein_id="HYY83320.1"
                     /translation="MGIRVPDPVLHRPSPGSAQPVFRFAPSPNGRLHLGHAYSALLNA
                     ELARAWGGRFLLRIEDIDVTRCRPELADAIEEDLDWLGVTWGQPVRRQSEHFEEYRAA
                     FAPLREAGLAYPCFCSRAQIAAVVAERERASGAAWPCDPDGSALYPGTCRFLPAATAQ
                     ARAAAGESHAWRLASDRARAQVGQDPSYVRFDRDGAEETIATAPARWGDAVVVRKEVP
                     TSYHLAVVVDDAGQGITHVVRGADLEAATDLHVLLQRLLGLATPRYHHHPLIRGEGGL
                     KLSKSVGSTALADLRAQGVMPDEIRAALGFAA"
     gene            complement(1212..3131)
                     /locus_tag="VE686_02325"
     CDS             complement(1212..3131)
                     /locus_tag="VE686_02325"
                     /EC_number="3.4.24.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003605295.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M23 family metallopeptidase"
                     /protein_id="HYY83321.1"
                     /translation="MSVNLRWLGASVLIGVTGALLIGAAIYVSVEGDTNFAEVPERAA
                     PSGPKTGAEERATNTARKGDKLVRADTIASAKQSFRAPVTIRAGDREVIKVRPFVRIA
                     TGLSLTTGVYATDIPAFNPLRLFAAENGERLPEAAPADVADADVSVVKKDLTAMTIDG
                     AAPALSDQDVLAQVAEERRMSAQAGRRPVTAIPAQLLLSRTLRQPPSMPDALGGTPGP
                     ETAFSSIEVRVVPENVTTWSKTDIRGADPLVDERDLTLQKGETLETTLRANGATNDQL
                     RSIMNALSARARTGLAEGQRIRLLIAPAGPGLGRQIMRIVLFGETGIEEIVAANDRGV
                     FVSVTPPRDDSRPRQAPGRTAQAGADDDEEEDEGSGARLYDSLYETVLKNELPRQTVE
                     DLVRIFGYDVDFQRRVSAGDSLELFYAVDEENAGERMDILYASLNVGGEVRRVYRHQG
                     DDGSVDYLDDQGRSLKKFLIRKPIAEGVLRSGFGYRRHPVLGYAKMHTGVDWANRIGT
                     PIIAAGNGTVIKAEWDSGYGRRVELQHANGYVTAYSHMSRFGRGVAAGARMRQGQVIG
                     YVGSTGLSTGPHLHYEVVVNGHFVDPMKIRVPRGRELDGRPLADFKRQREQVDDLLKK
                     AGGSTRLAQGSNGRT"
BASE COUNT          430 a         1075 c         1129 g          502 t
ORIGIN      
        1 ttcggggccg acaggccggg accccgcaac tcgtcgtccg acgcagcgag gacggcctcc
       61 ggcgtcagcg ggtcgaatcg cgtcttgaac cgcgcccaga tcgcgccggc gctcgcgacg
      121 gacagctgct ggctcacgat gatgccggca aggccctcga agccggggtc gcgcttgcgc
      181 aaggggggcg tggcgccctc gccgatgatg cgcttcatca ccggatcctt gcgcttgagc
      241 gcccgaacgc cttcgttgag cacgcggtcg gaatcgagaa ttatcgtcat ggggatccgt
      301 gtgcctgatc ctgtgctgca tcgcccgagc cctgggtcgg cgcaacccgt attccgtttc
      361 gccccgagcc cgaacggacg gctccacctg ggccatgcct actcggcgct gctcaacgcg
      421 gagctcgcgc gcgcctgggg cgggcgcttc ctcttgcgca tcgaggacat cgacgtgacg
      481 cgctgccggc cggagctcgc cgacgccatc gaggaagacc tcgattggct cggggtcacc
      541 tgggggcagc cggtgcggcg gcaatcggag cacttcgagg agtaccgtgc ggccttcgcg
      601 cccttgcgcg aggctgggct cgcgtatcca tgcttttgca gccgcgcgca gatcgccgcc
      661 gtcgtggccg agcgcgagcg cgcgagcggt gcagcctggc cgtgcgatcc cgacggatcg
      721 gcgctctacc cggggacttg ccgcttcctg ccggccgcga ccgcgcaggc ccgggctgcc
      781 gccggcgaga gccacgcgtg gcgcctcgcg tcggatcggg cgcgggccca ggtcgggcag
      841 gatccgtcgt acgtccgctt cgaccgcgac ggcgccgaag agacgattgc gacggcgccg
      901 gcccgctggg gagacgccgt ggtggtgcgc aaggaggtgc cgacgagcta ccatctcgcc
      961 gtcgtcgtgg acgacgcggg ccaggggatc acgcacgtgg tccgcggcgc cgatctcgag
     1021 gccgcgacgg acctgcacgt cctcctgcag cgcctgctcg ggctggcgac gccgcgctac
     1081 caccatcatc ccctgattcg aggggagggc ggcttgaagc tgtcgaaaag cgtcggctcg
     1141 acggccctcg ccgacctgcg cgctcagggc gtcatgccgg acgagatccg tgcggcgctc
     1201 gggttcgccg cctaggtccg gccgttgctg ccttgggcga ggcgggtcga tccgccggcc
     1261 ttcttgagca gatcgtcgac ctgttcgcgc tggcgcttga agtcggcaag ggggcggccg
     1321 tcgagctcac gtccgcgcgg gacccggatc ttcatgggat ccacgaagtg gccgttgacc
     1381 accacctcgt agtgcaggtg gggccccgtc gagaggcctg tcgagccgac gtagccgata
     1441 acctggcctt ggcgcatgcg cgcgcccgcg gcgacgccgc ggccgaagcg ggacatgtgg
     1501 ctgtatgcgg tgacatagcc gttggcgtgc tgcagctcga cccggcggcc gtagcccgag
     1561 tcccactccg ccttgatcac cgtaccattg ccggccgcga tgatcggcgt gccgatcctg
     1621 ttcgcccagt ccacgccggt gtgcatcttg gcgtagccga ggaccgggtg gcgtcggtag
     1681 ccgaaaccgg agcgcagcac gccttcggcg atcggcttcc ggatcaggaa cttcttgagc
     1741 gagcggccct ggtcgtcgag gtagtcgacg gagccgtcgt cgccctgatg gcggtacacc
     1801 cggcgcactt ccccgccgac gttgagcgag gcgtacagga tgtccatgcg ctcgccggcg
     1861 ttctcctcgt cgacggcata gaagagctcc aggctgtcgc cggccgaaac ccggcgctgg
     1921 aagtcgacgt cgtagccgaa gatgcgcacc agatcctcga ccgtctggcg cggcagctcg
     1981 ttcttgagga ccgtctcata gaggctgtcg tagaggcggg cgccggagcc ctcgtcctcc
     2041 tcctcatcgt cgtccgcgcc agcctgggcg gtcctgccgg gagcctggcg cggacgcgaa
     2101 tcgtcccggg gaggggtgac cgatacgaac actccgcgat cgttggcggc gacgatctcc
     2161 tcgatgccgg tctcgccgaa gaggacgatc cgcatgatct ggcgccctag accggggccg
     2221 gcgggggcga tgagcaaccg aatccgctgt ccctcggcga gcccggtcct cgcgcgcgcc
     2281 gagagcgcgt tcatgatcga tcgtagctgg tcgttcgtcg cgccattggc acgcagggtc
     2341 gtctcgaggg tctcgccctt ctggagggta aggtcgcgct cgtcgacgag cggatcggcg
     2401 ccccggatgt cggtcttcga ccaggtcgtc acgttctcgg ggaccacccg cacttcgatc
     2461 gagctgaagg cggtctcggg accaggcgtg ccaccaagcg cgtccggcat ggacggaggc
     2521 tggcgcaggg ttcgcgagag caggagctga gccggaatcg ccgtcaccgg gcggcgcccc
     2581 gcctgggccg acatgcggcg ctcctccgcc acctgggcga gaacgtcctg gtccgacagc
     2641 gccggcgcgg cgccgtcgat ggtcatcgcg gtcaggtctt tcttgacgac ggagacgtcc
     2701 gcgtcggcga cgtcggccgg cgccgcttcc ggaaggcgct cgccgttctc ggccgcgaac
     2761 aggcgcagcg ggttgaaggc tggaatgtcg gtggcgtaga cccccgtcgt cagcgacagg
     2821 cccgtggcga tacgcacgaa cgggcgcacc ttgatgactt cgcggtcgcc cgcgcggatg
     2881 gtcaccggag cccggaagct ctgcttcgcg gaggcgatgg tgtcggcgcg cacgagcttg
     2941 tcgcccttgc gcgccgtgtt ggtggcccgc tcctcggcac cggtcttcgg tcccgaaggc
     3001 gcggcgcgct ccggcacttc ggcgaagttg gtgtcgccct cgaccgagac gtagattgcg
     3061 gcgcctatca gcagggcgcc cgtgacgccg atgaggacac tggcgccgag ccagcgcagg
     3121 ttcacgctca ggcgat
//
LOCUS       DASQWN010000126         2123 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_506012, whole genome shotgun sequence.
ACCESSION   DASQWN010000126 DASQWN010000000
VERSION     DASQWN010000126.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2123)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2123)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2123
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_506012"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..273
                     /locus_tag="VE686_02330"
     CDS             <1..273
                     /locus_tag="VE686_02330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018427115.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="guanylate kinase"
                     /protein_id="HYY83322.1"
                     /translation="VSVFILPPSMRELKARLERRAEDSDDVIARRLDNARQEIAQWGN
                     YDYVLVNDDLQTTFDNLKAILAAERLRRSRQAGMERFVEVLLQERV"
     gene            complement(354..1208)
                     /gene="rsmA"
                     /locus_tag="VE686_02335"
     CDS             complement(354..1208)
                     /gene="rsmA"
                     /locus_tag="VE686_02335"
                     /EC_number="2.1.1.182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012317559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000179 - rRNA
                     (adenine-N6,N6-)-dimethyltransferase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA
                     (adenine(1518)-N(6)/adenine(1519)-N(6))-
                     dimethyltransferase RsmA"
                     /protein_id="HYY83323.1"
                     /translation="MSQIDALPPLREVVRAHGLLARKSLGQNFLFDLNLTSRIARAAG
                     PLDGVTVVEVGPGPGGLTRALLAAGACQVIAIERDPRCLPALAEIAAHYPERLHIVEA
                     DALSFDPRPLIEGQPARVVSNLPYNVGTPLLAAWLTDDDWPPWWQSLTLMFQREVAER
                     IVADESDRANYGRLGVLCGWRTQARILFDVPPSAFVPPPKVTSSVVQLVPRADPLPCR
                     IGALEAVTKAAFGQRRKMLRQSLKSLSPDPARLLAAAGVPETARAEEVAVPGYVALAN
                     AFDAMRRA"
     gene            complement(1205..>2123)
                     /gene="pdxA"
                     /locus_tag="VE686_02340"
     CDS             complement(1205..>2123)
                     /gene="pdxA"
                     /locus_tag="VE686_02340"
                     /EC_number="1.1.1.262"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011158611.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050570 - 4-hydroxythreonine-4-phosphate
                     dehydrogenase activity [Evidence IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA];
                     GO_process: GO:0042823 - pyridoxal phosphate biosynthetic
                     process [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="4-hydroxythreonine-4-phosphate dehydrogenase
                     PdxA"
                     /protein_id="HYY83324.1"
                     /translation="RPFFVVADAAVLRATATRLGADAPLAAVTPEEAAQAFGTALPVV
                     ALAESVAATPGSPDPRSAPGTIAAIETAVALTRSGRAAAVVTNPIAKHVLHAAGFSHP
                     GHTEFLAELARGADGSVPRPVMMIWSEALAVVPVTIHIPLRAVPDALTVDVIVETGRI
                     VARDLRERFGIAAPRLALAGLNPHAGESGSLGSEDHDVVEPAIARLRAEGIDASGPYP
                     ADTMFHERARQGYDVALAMYHDQALIPIKTIAFDDGVNVTLGLPFVRTSPDHGTAFDI
                     AGRGIARPDSLIAALKLASRLAPAGGGVT"
BASE COUNT          308 a          722 c          812 g          281 t
ORIGIN      
        1 gtcagcgtct tcatcctgcc gccgtccatg cgggagctga aggcgcgcct ggagcgccgg
       61 gcggaggatt cggacgacgt cattgcccgc cggctcgaca atgcgcgcca ggagatcgcc
      121 cagtggggca actacgacta cgtcctcgtg aacgacgacc tgcagacgac cttcgacaac
      181 ctgaaggcca tcctcgccgc cgagcggctg cgccggtcgc ggcaggccgg catggagcgc
      241 ttcgtggaag tgctgctgca ggagcgggtc tagccccgat cccctccgac cgacgcgcga
      301 gcggccctca gcgcgcctga cggtcggccc tctgtgtctt gtcctcgggg acgctacgcg
      361 cgacgcatcg cgtcgaaggc gtttgccagg gcgacgtagc ccgggacggc gacctcctct
      421 gcgcgcgccg tctcaggcac cccggcggct gcgagaagac gggcggggtc ggggctcaag
      481 ctcttcaggc tctgccgcag catcttgcgg cgctggccga aggcggcctt ggtgaccgct
      541 tcgagtgcgc caatgcggca tggcagggga tcggcgcgcg ggaccaactg gaccacgctc
      601 gaggtgacct tcggcggtgg cacgaaggcc gagggcggca cgtcgaagag gatgcgggcc
      661 tgcgtgcgcc agccgcacag cacccccagg cggccgtagt tggcgcggtc gctctcgtcc
      721 gcgacgatgc gctccgccac ctcgcgctgg aacatcaggg tcagggactg ccaccacggc
      781 ggccagtcgt cgtccgtgag ccaggcggcg aggagcggcg tgccgacgtt gtagggcagg
      841 ttcgagacga cgcgggccgg ctgcccctcg atcagcggcc gcgggtcgaa gctgagggcg
      901 tcggcttcga cgatgtgcag ccgctccggg tagtgggcgg cgatctcggc caacgccggc
      961 aggcagcgcg ggtcgcgctc gatggcgatc acctggcagg cgcccgcggc cagcagcgcc
     1021 cgggtgagac cgcccggccc cggtccgacc tcgacgacgg tgacgccgtc gagcggtccg
     1081 gcggcccgcg caatgcggct cgtgaggttc agatcgaaga ggaagttctg gccgagcgac
     1141 ttcctggcca gcagcccgtg cgcgcgcacc acctcgcgca agggaggaag cgcgtcgatc
     1201 tggctcaagt gaccccgccg cctgcaggcg caaggcgcga ggcgagcttc agcgcggcga
     1261 tgaggctgtc cgggcgcgcg atgccccggc cggcgatgtc gaaggcggtg ccgtggtcgg
     1321 gggaggtgcg cacgaacggc aggccgaggg tcacgttgac cccgtcgtcg aaggcgatcg
     1381 tcttgatcgg gatgagcgcc tggtcgtggt acatggcgag ggccacgtcg tatccctgcc
     1441 gcgcgcgctc gtggaacatg gtgtcggccg gatagggccc gctcgcgtcg atgccctcgg
     1501 cccggaggcg tgcgatcgcc ggctcgacga cgtcgtgatc ctccgaaccg agcgagccgc
     1561 tctcgccagc gtgcggattg agccccgcga gggcgagccg cggcgcggcg atgccgaagc
     1621 gctcgcgcag gtcgcgcgcc acgatgcgcc cggtctcgac gatgacatcg accgtaagcg
     1681 cgtccggaac cgcgcggagc gggatgtgga tggtcacggg aaccaccgcc agcgcctcgc
     1741 tccagatcat catgaccgga cgcggaacgc tgccgtccgc gccgcgcgcc agctcggcca
     1801 ggaactcggt atgccccggg tggctgaagc cggcggcgtg cagcacgtgc ttggcgatcg
     1861 ggttcgtcac gaccgcggcg gcgcggccgg agcgggtgag ggcgacggcg gtctcgatcg
     1921 ccgcgatggt tcccggagcg ctgcggggat ccggggagcc cggcgtggct gcgacggact
     1981 cggcgagagc gacgacggga agcgcggtcc cgaaggcttg ggcagcttcc tcgggcgtca
     2041 cggcagccag cggtgcgtca gctccgagcc gggtcgcagt cgcgcgcagc acagccgcat
     2101 ccgcgacgac gaagaacggc cgg
//
LOCUS       DASQWN010000127         2155 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1410088, whole genome shotgun sequence.
ACCESSION   DASQWN010000127 DASQWN010000000
VERSION     DASQWN010000127.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2155)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2155)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2155
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1410088"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..331)
                     /gene="petA"
                     /locus_tag="VE686_02345"
     CDS             complement(<1..331)
                     /gene="petA"
                     /locus_tag="VE686_02345"
                     /EC_number="7.1.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016839713.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0045275 - respiratory chain complex III
                     [Evidence IEA];
                     GO_function: GO:0008121 - ubiquinol-cytochrome-c reductase
                     activity [Evidence IEA];
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_process: GO:0009060 - aerobic respiration [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ubiquinol-cytochrome c reductase iron-sulfur
                     subunit"
                     /protein_id="HYY83325.1"
                     /translation="MADTTAAEPTRRDFLYLATGAAGAVGTALAVWPFVSSMAPDAQT
                     VAAGAPIEVDLTPIAEGQIVKVFWRGKLIFVRNRTKAEIDAARNVELGSLRDPQPDQA
                     RVKDGKDQ"
     gene            complement(682..>2155)
                     /locus_tag="VE686_02350"
     CDS             complement(682..>2155)
                     /locus_tag="VE686_02350"
                     /inference="COORDINATES: protein motif:HMM:NF012656.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016627 - oxidoreductase activity, acting
                     on the CH-CH group of donors [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase family protein"
                     /protein_id="HYY83326.1"
                     /translation="HVQHLARQANRHTPELRTHDRFGNRVDQVEFHPAWHELMTLAIG
                     QETHSLSWTDARPGAQVARGALTYLWNQGENGIMCPILMTYASIPTLRSDAELARVWE
                     PKVLSTRYDPRQAAAAEKTGVTIGMAMTEKQGGTDLRQTQTVAERDGAMWRIVGHKWF
                     FSVPHSDAFITLARTERGVSCFWVAGWLPDGSRNHVMIQRLKDKAGNKSNASSEVEFR
                     GAYGTLVGEEGHGIREAISMGHLTRLECALSSAGIMRQAVAQAAHHVSHRRAFQKSLI
                     DQPMMANVVADLHLESSAAAWLVFRLLAAAGREDEPAERLLWRIGAPIAKYWICKRTV
                     PTVAEALECHGGNGFIEDHLIARLYREAPLNGIWEGSGNVMCLDVLRSIAREPACVPA
                     LLDEIRSGAGQDRRLDSAIAALADDVADLARHEGQARRLVERLATVWSASLLVRHAEP
                     EMADAYIASRLGEAWTGAFGTLPRSIDPAPIARSAAPLAA"
BASE COUNT          307 a          733 c          779 g          336 t
ORIGIN      
        1 actggtcctt gccgtccttg acccgggcct ggtctggctg ggggtcgcgc agagaaccga
       61 gctcgacgtt gcgcgcggcg tcgatctcgg ctttcgtgcg gttgcggacg aagatcagct
      121 tgccgcgcca gaacaccttg acgatctggc cttcggcgat gggcgtgagg tcgacctcga
      181 tcggcgcgcc ggccgctacc gtctgggcgt cgggcgccat cgacgacacg aagggccaca
      241 ctgccagcgc ggtacccacc gcgcctgccg ctcccgtcgc caaatagagg aagtctcgcc
      301 gcgtgggctc ggcggcggtg gtatcggcca tgctttgcgc caagacctgg ctctcccaac
      361 ctcgtgcaga acgtaaaagt gcgccggcga ccgcttcaca gcggccgggc gccgggcctg
      421 ccaggaccaa gcccgaatgc cgacccccgc gcaacgcgac tgggcgtcgc cacgcgggcg
      481 gctctttggc acggcaaagc acggctgtcc ataggaggga aacggcgtgt gcggctggct
      541 ctgcaagagc ggccttccgg cccacggatg aacacccgca tgaccaagag tctagccgcc
      601 gctgcaagcg cgccgacggg cgtttttcga atcggcgcca acggtcgcat ctccgccctg
      661 cgagcgcgga tgggggcaaa gtcaggccgc gagcggcgcc gccgatcgcg cgatgggagc
      721 cgggtcgatc gagcgcggaa gcgtgccgaa ggcgcccgtc caggcctcgc cgaggcggct
      781 tgcgatgtag gcgtccgcca tctcgggctc ggcatggcgc acgagaaggc tcgcggacca
      841 gacggttgcg aggcgctcga cgaggcggcg ggcctggccc tcgtgccggg cgaggtcggc
      901 gacgtcgtcg gcgagcgccg cgatcgcgct gtcgaggcgc cggtcctgcc cggcgccgct
      961 gcgtatctcg tcgaggagcg ccggcacgca ggccggctcg cgcgcgatgg agcgcagcac
     1021 gtcgaggcac atgacgttgc cggacccttc ccagatgccg ttgaggggcg cctcgcgata
     1081 gaggcgcgct atcaggtggt cctcgatgaa gccgttgccc ccgtggcact cgagggcctc
     1141 ggcgacggtc ggcaccgtgc gcttgcagat ccagtatttc gcgatcgggg ctccgatgcg
     1201 ccacaggaga cgctccgccg gctcgtcctc gcggcctgcg gcggcaagga ggcggaacac
     1261 gagccaggcc gcggccgagc tttcgaggtg caggtcggcg acgacgttcg ccatcatcgg
     1321 ctgatcgatg aggctcttct ggaaggcccg ccggtggctc acgtggtgcg ctgcctgcgc
     1381 caccgcctgg cgcatgatgc ccgccgagga aagcgcgcat tcgaggcgcg tgaggtgtcc
     1441 catggagatc gcctcgcgga tgccgtgccc ctcctcgccg acgagggtgc cgtaggcgcc
     1501 gcggaattcg acctcggagg atgcgttcga tttgttgccg gccttgtcct tcagccgctg
     1561 gatcatgacg tggttgcggc tgccgtcggg cagccagccc gcgacccaga agcacgacac
     1621 tccgcgctcc gtgcgcgcga gcgtgatgaa ggcgtccgag tgcggcaccg agaagaacca
     1681 cttgtgcccg acgatgcgcc acatggcgcc gtcgcgctcg gcgacggtct gggtctggcg
     1741 caggtccgtg ccgccctgct tctcggtcat ggccatgccg atggtgacgc cggttttctc
     1801 ggccgccgcc gcctggcggg gatcgtaccg ggtcgagagc accttcggct cccagacccg
     1861 cgcgagctcc gcgtccgacc gcagcgtcgg gatcgacgcg taggtcatga ggatcgggca
     1921 catgatcccg ttctcgccct ggttccagag gtacgtcagg gccccgcgcg cgacctgcgc
     1981 gccggggcgc gcatccgtcc atgacagcga atgcgtctcc tgcccgatgg cgagggtcat
     2041 cagctcgtgc caggcggggt ggaactcgac ttggtcgacc cggttgccga aacgatcgtg
     2101 ggtgcgcagc tccggcgtat gccggttggc ttgccgggcc aggtgctgga catgc
//
LOCUS       DASQWN010000128         3556 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1211931, whole genome shotgun sequence.
ACCESSION   DASQWN010000128 DASQWN010000000
VERSION     DASQWN010000128.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 3556)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3556)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3556
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1211931"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..653
                     /locus_tag="VE686_02355"
     CDS             <1..653
                     /locus_tag="VE686_02355"
                     /inference="COORDINATES: protein motif:HMM:NF013584.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="amidase family protein"
                     /protein_id="HYY83327.1"
                     /translation="TAPSAEVGGAVQGEIEKLGRWLEGEGARVDWRAVPTDPTAAHEA
                     YIMLLRAATAGRLTEEQLTKLARERQSLDPSRSDYHAWMLRGVTMSHWEWLRWDNERH
                     RIRRDWERFFEAYDLLLCPAAATTAFPHNQQGERWERMVRVNGADQPSTTQMLWAGYS
                     GMVFLPSTVAPIGRADDGLPVGVQIVGPQYGDLSCIRFAQLIERAYGGFVPPPGFA"
     gene            650..1072
                     /locus_tag="VE686_02360"
     CDS             650..1072
                     /locus_tag="VE686_02360"
                     /EC_number="3.1.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007563543.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0047617 - acyl-CoA hydrolase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PaaI family thioesterase"
                     /protein_id="HYY83328.1"
                     /translation="MTEATGKAAQIFGADIPFASMCGVEALGFENGKTRLRLALKPEH
                     GNNLGIAHGGVICTLLDIAMGTAARCTIGLPVMTLDMQTSFIGPGRGVLIGEGRVLRA
                     GRSILFCEAEVTAEDTGELIAKGSGVFKPARAKGAADG"
     gene            1065..1613
                     /locus_tag="VE686_02365"
     CDS             1065..1613
                     /locus_tag="VE686_02365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018181738.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0030151 - molybdenum ion binding [Evidence
                     IEA];
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MOSC domain-containing protein"
                     /protein_id="HYY83329.1"
                     /translation="MADAPSVAAVALSGTHSFTKPTVERIQLVEGLGVDGDAHLGKTV
                     KHRSRVRRDPTQPNLRQVHLIHGELHDELRARGFAVRPGDMGENVTTRGLDLLALPAG
                     TRLRLGTVATVEVTGLRNPCVQLDEFMPGLMAATLDRDAEGNLVRKAGVMAIVIAGGE
                     VRPGDPIGVEFPQEPHRALAPV"
     gene            complement(1610..2371)
                     /locus_tag="VE686_02370"
     CDS             complement(1610..2371)
                     /locus_tag="VE686_02370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008132101.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY83330.1"
                     /translation="MGAQFCDDGELGYERARTRFDPGAGLVLDEAYRLAHLPLVAPGH
                     PRVIASREGSDYTMGRHARVFSLVLPVSAAELAVSDAYKTLERELRSAPFADKIAWNL
                     LERRGAKLHATVCGSLGTGDPPTLGSEVRRELSRIGPIAVEVRGLFSGNVNVGRLYLR
                     VYPERRDGNVLHRIQRALGRAETDLYLVGVYNFVDDLDPGQAAALAQILDVWWHRPLL
                     RFETDVLWLLGATDDLVLDAAVVETIPLTGAVRAG"
     gene            complement(2390..2515)
                     /locus_tag="VE686_02375"
     CDS             complement(2390..2515)
                     /locus_tag="VE686_02375"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY83331.1"
                     /translation="MRETSVLLAVPIAVIFLRDKAGSWRWATAGLITAGVVLIRV"
     gene            complement(3197..>3556)
                     /locus_tag="VE686_02380"
     CDS             complement(3197..>3556)
                     /locus_tag="VE686_02380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019402190.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="prolyl oligopeptidase family serine peptidase"
                     /protein_id="HYY83332.1"
                     /translation="LALVGFSQGTIMALHLGLRRLQPPAAIVGYSGLLVLEEGKGPES
                     LAGQVRAKPPILLVHGDRDEVIPLDALFMSADALAAAEVPCEWHLSVGVGHGIDAEAL
                     RHGGLFLRRAFGLPYPK"
BASE COUNT          554 a         1225 c         1265 g          512 t
ORIGIN      
        1 tcacggcgcc gtcggccgag gtcggcggcg ccgtccaagg cgagatcgag aagctcgggc
       61 gatggctcga gggcgagggc gcgcgggtgg actggcgcgc cgtgccgacc gacccgacgg
      121 cggcgcacga ggcctacatc atgctcctgc gggcggcgac ggcggggcgg ctcaccgagg
      181 agcagctcac caagctcgcg cgcgagcgcc agagcctcga cccatcgcgg tccgactacc
      241 acgcctggat gctccgtggc gtgaccatga gccattggga gtggctgcgc tgggacaatg
      301 agcgccaccg catccgccgc gactgggagc gcttcttcga agcgtacgac ctcctgctct
      361 gccccgctgc cgccaccacc gccttcccgc acaatcagca aggcgagcgc tgggagcgca
      421 tggtccgcgt caacggagcc gaccagccct cgacgacgca gatgctgtgg gccggctact
      481 cgggcatggt gttcctgccc tcgaccgtcg cgccgatcgg ccgggccgac gacgggctgc
      541 cggtcggcgt ccagatcgtc gggccgcagt acggcgatct gtcctgcatc cgcttcgcgc
      601 agctgatcga gcgcgcgtac ggcggcttcg tgccgccccc gggcttcgca tgaccgaggc
      661 caccggaaag gcggcccaga tcttcggtgc cgacatcccg ttcgcctcca tgtgcggcgt
      721 cgaggcgctc ggcttcgaga acggcaagac tcgcctgcgc ctcgcgctca agcccgagca
      781 cggcaacaac ctaggcatcg cccacggcgg cgtcatctgc accctgttgg acatcgccat
      841 gggcacggcg gcgcgctgca ccatcggcct gccggtgatg acccttgaca tgcagacgag
      901 cttcatcggg cccggacgcg gcgtgctcat cggcgagggc cgggtgctcc gcgcgggccg
      961 ctcgatcctg ttctgcgagg ccgaggtgac cgcggaggac accggggagc tgatcgcgaa
     1021 gggaagcggc gtgttcaagc cggcgcgcgc gaaaggtgcc gccgatggct gatgctccct
     1081 cggtggcggc ggtcgcgctg agcggcacac acagcttcac taagccgacg gttgaacgaa
     1141 ttcagcttgt cgaagggctc ggggtcgatg gcgacgcgca tctcggcaaa accgtcaagc
     1201 accgctcacg cgtccggcgc gacccgacgc agccgaacct gcgccaggtc cacctgatcc
     1261 acggcgagct gcatgacgag ctgcgggcgc gcggatttgc cgtccggccc ggcgacatgg
     1321 gcgagaacgt cacgacgcgc gggctcgacc ttctcgcgct ccccgccggc acgcgcctgc
     1381 ggctcggcac cgtcgcgacc gtcgaggtca ccggcctgag aaatccgtgc gttcagctcg
     1441 acgagttcat gccgggcctc atggccgcca ccctcgaccg cgacgcggaa ggcaatctcg
     1501 tccgaaaggc cggcgtcatg gcgatcgtca tcgccggagg cgaggtccgc ccaggcgacc
     1561 cgatcggcgt ggagttcccg caggagccgc accgcgccct cgcaccggtc tagccggccc
     1621 gtaccgctcc agtcagcggg atcgtttcga cgaccgccgc gtcgagcacg aggtcgtcag
     1681 tcgccccgag cagccagagc acatccgtct cgaaccgcag cagagggcgg tgccaccaaa
     1741 cgtccaggat ttgcgcgagt gcggcggcct gtcccggatc gaggtcgtcg acgaaattgt
     1801 agaccccgac gaggtagagg tcggtttcgg ctcggccgag agcgcgctgg atgcggtgca
     1861 ggacgttgcc gtccctgcgc tcgggataga cccgcaggta aagccggccc acgttgacgt
     1921 tgccagagaa gaggccgcgc acctcgacgg cgatcggccc gatgcgcgac agctcacgcc
     1981 gaacttccga accgagcgtc ggcggatctc ccgtcccaag cgacccgcac accgtggcgt
     2041 gaagctttgc gccccgtcgt tccaacaggt tccaggcgat cttgtcagca aagggggccg
     2101 accgtagctc gcgctcaagc gtcttgtacg cgtccgacac ggcaagttcg gcggctgaca
     2161 ccggaaggac gagtgagaac acgcgggcgt gccggcccat cgtgtagtcg ctgccttctc
     2221 gggacgcgat gacgcgcggg tggccgggag ccacgagcgg aaggtgggcg aggcggtacg
     2281 cttcgtcgag aacgagcccc gcgccaggat cgaagcgcgt ccgcgcgcgc tcgtatccaa
     2341 gctcgccgtc gtcacagaat tgcgcgccca tcctactccg gttccgccgc tagacccgta
     2401 tcagcacgac gccggcggtg ataagcccgg cggtggccca gcgccaagac ccggccttgt
     2461 cgcgcagaaa gatcaccgcg atcgggacgg caaggaggac gcttgtctcg cgcaacgcgg
     2521 caacaacgcc ggttggggca ttctcctcgg cttgacttta tgttcacttt atgttctctc
     2581 ccctacgtcc cgctcggcag agggtgcttc cggaggtgtc tggttgcagg gcggcatcgc
     2641 tgacgagggt ctcggccggt gacggttggg atcggaggag gcgctggttc gaggaacgag
     2701 ggcctttagg gctcgagctc cgaagggctg atgcggtgtc cgggtcgcgg gggtcacgtc
     2761 ccgtggtcca gggtccttac cgacgaccgg gatcggcgca gctgccaggc gcgtccccgg
     2821 gaagcggggt cccgtccgtc ctctccgggg cggacctcgg gccggttctg cgccttgcgg
     2881 gttcgtcccc gggatgcggt ttcgatccga ggcccactgc cgagagaggt ccgcgcgcaa
     2941 gcgcttgagg tgctcgggag gcagccctcc ctcgcagcgc cgaagcgcgg gaccagggat
     3001 caaaggcatc gcggtgcgag gcgcggccga ccctacgcgg ggacggcctg cctgcctgtt
     3061 tccgcccggc ctcgcggccg gggccgaccg cgcctcgcgc ccccctcttt gttggaggac
     3121 gcgctgaagc gaaggccaaa ccctcgggcc gagaggctgc ggggctatcg gcgcgtgcgc
     3181 gatcgggagc cgtcgatcac ttcggatacg gcagcccgaa ggcgcggcgg aggaagaggc
     3241 cgccgtggcg caaggcctcg gcgtcgatgc cgtgaccgac cccgaccgac aggtgccact
     3301 cgcacggaac ctcggcggcc gcgagggcgt cggccgacat gaagagggcg tcgagcggga
     3361 tgacctcgtc gcggtcgccg tggacgagga gaatgggtgg cttcgcccgg acctgcccgg
     3421 cgaggctctc gggccccttg ccttcctcga gcacgaggag gcccgaataa ccaacgatcg
     3481 cggcgggcgg ctgcagccgg cgcaggccga ggtgcagcgc cataatggtc ccctggctga
     3541 agccgacgag ggcgag
//
LOCUS       DASQWN010000129         4451 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_715382, whole genome shotgun sequence.
ACCESSION   DASQWN010000129 DASQWN010000000
VERSION     DASQWN010000129.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 4451)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4451)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4451
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_715382"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..545)
                     /locus_tag="VE686_02385"
     CDS             complement(<1..545)
                     /locus_tag="VE686_02385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015663684.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxyphenylpyruvate dioxygenase"
                     /protein_id="HYY83333.1"
                     /translation="MGPFPHDAPPPAISEDNPMGTDGFEFVEFCHPDPGELDRLFKVM
                     GFSAVARHRSKDVTLYRQGDVNFILNAEPESFAAQFAAEHGPSAPAMAFRVVDARRAY
                     ERALSLGARPAKTEIGLMELNIPAIEGIGGLQIYLVDRYGAKGSIYDVDFTWTGGRDP
                     HPPGAGLHYIDHLTHNVERGR"
     gene            complement(824..1222)
                     /locus_tag="VE686_02390"
     CDS             complement(824..1222)
                     /locus_tag="VE686_02390"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HYY83334.1"
                     /translation="MSKQLVVLHVARDGLTQVLTTSGLAIYGYDVLTASTGAAAVELL
                     QTHRRIDVLVTDAELGGEVDGLKLARVARDLNPKIEVIYTARFPQKLSEQMKVRGAPS
                     IRAPYHPHQIASVIAALKHRVVADEYGQVA"
     gene            1341..2807
                     /locus_tag="VE686_02395"
     CDS             1341..2807
                     /locus_tag="VE686_02395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018182873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M81 family metallopeptidase"
                     /protein_id="HYY83335.1"
                     /translation="MRIFAASLATETNSFSAIPTNRRSFEETVYFRPGEHPDRATHCT
                     APLWVARRRARQEGFELVEGSCFWAEPSGPVLQADYESMRDEILDQLRAALPVDAVLL
                     GLHGAMIATGCDDCEGDIVERVRTIVGPNTTIGVELDPHCHLTQKRVRNADIVILYKE
                     YPHTDFIERAEELVTLVLKTRRGEIRPVMSLYDCGMEELFPTGRQPGRGFVDRMSGLE
                     GKDGVLSVSLGHGFIQGDVPEHGTRVLVVTNDAKAAGDTLARTLGEEVREKRGQWGPP
                     YLSLHEAIDQVYAEPRGPVVVADPSDNAGAGATSDNTNVIRSLIERGCVDACVGPVWD
                     PVAVAFCHAAGVGTTMNLRFGGKAAASSGQPIDAEVTVIGLCTDGRQSFGAASVRFGD
                     AAAIRVGGVEVSLVSERTQALGTEIFSAVGIDLASKRYIGVKSTNHFYAAFAPLATKV
                     LWAEGGGSCPIDHRKYPYAKIPRPLWPHDDLPPGRLLI"
     gene            complement(2911..3336)
                     /gene="rplQ"
                     /locus_tag="VE686_02400"
     CDS             complement(2911..3336)
                     /gene="rplQ"
                     /locus_tag="VE686_02400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019403798.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005762 - mitochondrial large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L17"
                     /protein_id="HYY83336.1"
                     /translation="MRHGFRGRRFNRSAEHRKAMFANMSAALIKHEQIVTTLPKAKDL
                     RPVVEKLVTLGKRGGIHGRRLAMSQLRDETMVRKLFDVLGPRYADRPGGYLRVLKAGF
                     RQGDNAPMAVIEFVDRDLDAKGQDSGPVQGNDAEESAAA"
     gene            complement(3465..>4451)
                     /locus_tag="VE686_02405"
     CDS             complement(3465..>4451)
                     /locus_tag="VE686_02405"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011926060.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003899 - DNA-directed 5'-3' RNA
                     polymerase activity [Evidence IEA];
                     GO_process: GO:0006351 - DNA-templated transcription
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit alpha"
                     /protein_id="HYY83337.1"
                     /translation="RPNKLQVAGGADPKRVATVVAEPLERGFGQTLGNALRRILLSSL
                     QGAAVQSVHIDGVLHEFSSIPGVREDVTDIVLNIKTIAIKMQGEGPKRMTLRKTGPGA
                     VTAGDINTVGDVQILNPDLVLCTLDEGAEIRMEFTVATGKGYVPAERNRPEDAPIGLI
                     PVDSLYTPVKKVSYRVENTREGQELDLDKLVMTVETNGAVTPEDAIALAARIVQDQLS
                     VFVNFDEPRKEEAAISTPQLPFNPALLKKVDELELSVRSANCLKNDNIVYIGDLIQKS
                     EAEMLRTPNFGRKSLNEIKEVLASMGLHLGMEVPGWPPENIDDLAKRFEEHY"
BASE COUNT          692 a         1475 c         1527 g          757 t
ORIGIN      
        1 atgcggccgc gctcgacgtt gtgggtgagg tggtcgatgt aatgcaggcc ggcgcccggc
       61 ggatgcgggt cgcgcccgcc cgtccaggtg aagtcgacgt cgtagatcga gcccttcgcg
      121 ccgtagcgat cgacgaggta gatctggagg ccgccgatac cctcgatcgc cgggatgttg
      181 agttccatca gcccgatctc ggtcttggcc ggcctcgccc cgagcgacag ggcgcgctcg
      241 taggcgcgcc tcgcatcgac cacccggaag gccatggcag gagcggaggg gccgtgctcg
      301 gccgcgaact gcgcggcaaa cgattcaggc tcggcgttga ggatgaagtt gacgtcgccc
      361 tgccggtata gcgtgacgtc cttcgaccgg tgccgggcga cagcggaaaa gcccatgacc
      421 ttgaacaggc gatcgagttc gccggggtcg gggtggcaga actcgacgaa ctcgaagccg
      481 tcggtcccca tcgggttgtc ttccgagatg gcgggcggcg gtgcgtcgtg cgggaagggt
      541 cccatggctc actcctcgtc gctcgactgc ggcaggggtc accttttcaa cgccggatcg
      601 ccgccagagg ctccgctgct tcgccgaaag cgcaggcgca ggccgccaga caagcttccg
      661 cggtggtcgg aaccggacag gcgcccgtcc tggcaccttg ccgcgtcagg agcacaacgg
      721 ccgcggccag ggatcatggc aaggaggttc tgggtgagcc gcaggggctc acaagtcccc
      781 gccctgacag gcggccggtt gcctgacctg ggaagagcgg cgctcaggcg acttggccgt
      841 actcgtccgc gacgactcga tgcttgagcg cggcgatgac cgaggcgatc tggtgcgggt
      901 ggtagggcgc gcggatcgac ggcgcgccgc gcaccttcat ctgctccgac agcttctgcg
      961 ggaagcgcgc cgtgtagatc acctcgatct tgggattgag gtctcgcgcg accctggcga
     1021 gcttgagacc gtccacctcg cctccgagct cggcgtcggt gaccagcacg tcgatccgcc
     1081 ggtgcgtctg cagaagctcc acggcggcgg cgccggtcga cgcagtcagc acatcgtagc
     1141 cgtagatggc gagcccgctc gtcgtaagaa cctgcgtgag cccgtctcgg gcaacgtgaa
     1201 gcacgacaag ctgcttgctc atgttgcggg tcctcgctgg tatgattcgt gtgatcggtt
     1261 ggcgagtgcc tgacaaaccg gttaacgagt gatgatgctg ggcgcgaaac cctaacgacg
     1321 cgttaacgga accattaacc atgcggatct ttgcggcctc gctcgcaacc gagacgaact
     1381 ccttctccgc catcccgacg aaccgccgca gcttcgagga gaccgtctac ttccggccag
     1441 gcgagcaccc ggaccgcgcg acccattgca ccgcgccctt atgggtggcg cgccgccgcg
     1501 cgcggcagga aggcttcgag ctggtggaag gctcctgctt ctgggccgag ccctccggcc
     1561 ccgtgctgca ggccgactac gagagcatgc gcgacgagat cctcgaccag ctccgcgccg
     1621 ccctccccgt cgacgccgtc ctgctcgggc tgcacggcgc catgatcgcg accgggtgcg
     1681 acgactgcga gggcgacatc gtcgagcggg tgcggacgat cgtcggcccg aacacaacca
     1741 ttggagtcga gctcgatccg cattgccatc tcacgcagaa gcgcgtgcgc aacgccgata
     1801 tcgtcatcct ctacaaggag tatccgcaca ccgacttcat cgagcgcgcc gaggagctcg
     1861 tcaccctggt gctgaagacg cggcgaggcg agatcaggcc ggtcatgtcg ctctacgact
     1921 gcggcatgga agagctgttt ccgacggggc gtcagcccgg ccgcggcttc gtcgaccgga
     1981 tgagtggcct cgagggtaag gacggcgtgc tctcggtgtc gctcggccac gggttcatcc
     2041 agggcgacgt ccccgagcac ggcacgcgcg tcctcgtcgt caccaacgac gccaaggcgg
     2101 cgggagacac cctcgcgcga acactcggcg aggaggtgcg cgagaagcgg ggccaatggg
     2161 gtccgccgta cctgtcgctc catgaggcca tcgatcaggt ctatgcggag ccgcgcgggc
     2221 cagtggtcgt ggccgatccg tccgacaacg ccggcgccgg cgcgacgtcg gacaacacga
     2281 acgtgatccg cagcctgatc gagcgcggct gcgtcgacgc ctgcgtcggg ccggtgtggg
     2341 accccgtcgc ggtcgccttc tgtcacgccg caggcgtcgg cacgaccatg aacctgcgct
     2401 tcggcggcaa ggcggcggcc agttcgggcc agccgatcga cgccgaggtg acggtcatcg
     2461 gactatgcac cgatgggcgg cagtcgttcg gcgctgcgag cgttcggttc ggcgatgctg
     2521 ccgcgattcg cgtcggcggc gtcgaggtct cgctggtcag cgagcgcacg caggcgctcg
     2581 gcacggaaat cttctccgcc gtcggcatcg acctcgcctc gaagcgctac atcggcgtga
     2641 agtcgacgaa ccacttctat gcggccttcg cgcccctcgc gacgaaggtg ctctgggccg
     2701 aaggcggcgg ctcctgcccg atcgatcacc gcaagtaccc ttacgccaag atcccccgcc
     2761 ctctctggcc gcacgacgac cttccgcccg gtcgcctgct gatctgaggc ggcgggcctc
     2821 ccggtcggga taccctcgga tccgaccggc ggcggcatga aaaaggcggc cacgaggccg
     2881 cctttggaag tcgggggaga tgcggagcga tcaggccgcc gcgctctcct cggcgtcgtt
     2941 gccctgcacg ggtcccgagt cctggccctt ggcgtcgagg tcgcggtcga cgaactcgat
     3001 caccgccatc ggtgcgttgt caccctgacg gaagccggcc ttgaggacgc ggagatatcc
     3061 gcccgggcgg tccgcatagc gcggcccgag aacgtcgaag agcttcctca ccatcgtctc
     3121 gtcgcgcagc tgcgacatcg cgaggcggcg gccgtggatg ccgccacgct tgccgagcgt
     3181 gaccagcttc tcgaccactg ggcgcaggtc cttcgccttg ggcagcgtgg tgacgatctg
     3241 ctcgtgcttg atgagggctg ccgacatgtt ggcgaacatc gccttgcgat gctcggccga
     3301 acggttgaag cggcggccgc ggaatccgtg acgcatggct gtctcctttg attacggccg
     3361 ccgtgccaag ggccggccgg gtgttgttgt ccctgccccg cttgcggaac aggccagtgt
     3421 gaggcggatt caacctctcc cgcaaagcgg cagaggcaag tgcctcagta gtgctcctcg
     3481 aagcgcttcg cgaggtcgtc gatgttctcc ggcggccagc ccggcacttc catgcccagg
     3541 tgcaggccca tggaggcgag aacctccttg atctcgttca gcgacttgcg gccgaagttc
     3601 ggggtccgca gcatctcggc ctcggacttc tggatcaggt cgccgatgta gacgatgttg
     3661 tcgttcttca ggcagttcgc cgagcgcacc gacagctcga gctcgtcgac cttcttgagc
     3721 agcgccgggt tgaagggcag ctgcggcgtc gagatcgccg cctcttcctt gcgcggctcg
     3781 tcgaagttca cgaacaccga gagctggtcc tggacgatgc gggccgcgag cgcgatcgca
     3841 tcctcagggg tgaccgcgcc gttcgtctcg acggtcatga cgagcttgtc gaggtcgagc
     3901 tcctggccct cgcgggtgtt ctcgacccgg taggagacct tctttaccgg ggtgtacagg
     3961 ctgtcgaccg ggataaggcc gatcggcgcg tcctcgggcc ggttgcgctc ggccggcacg
     4021 tagcccttgc cggtcgcgac cgtgaactcc atgcggatct ccgcgccctc gtcgagggtg
     4081 cagaggacaa ggtccgggtt caggatctgg acgtcgccga cggtgttgat gtcgcctgcc
     4141 gtcactgcgc ccgggccggt cttgcgcagg gtcatgcgct tcggcccttc gccctgcatc
     4201 ttgatggcga tggtcttgat gttgaggacg atgtcggtca cgtcctcacg cacgccgggg
     4261 atcgacgaga actcgtgcag cacgccgtcg atatgcaccg actgcacggc agcgccttgc
     4321 agcgacgaca gcagaatgcg gcgcagcgca ttgccgaggg tttgaccgaa gccgcgctcg
     4381 agcggctccg ccacgaccgt tgcgacgcgc ttgggatcgg cgccaccggc aacctgcagc
     4441 ttgttaggtc g
//
LOCUS       DASQWN010000130         3241 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_208744, whole genome shotgun sequence.
ACCESSION   DASQWN010000130 DASQWN010000000
VERSION     DASQWN010000130.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 3241)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3241)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3241
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_208744"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..369)
                     /locus_tag="VE686_02410"
     CDS             complement(<1..369)
                     /locus_tag="VE686_02410"
                     /inference="COORDINATES: protein motif:HMM:NF022750.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3108 domain-containing protein"
                     /protein_id="HYY83338.1"
                     /translation="MTRLATGLGAALGAAALALAARSAEAATFKADYAVTLAGFPIAT
                     ADLVSSIDGTSYKTQIQARTTGLAGVFASGKGGAVASGSLAGGQPVPASFALTSRTSS
                     SQVAVRMVLAQGNVAQLEIVP"
     gene            496..1359
                     /gene="bla"
                     /locus_tag="VE686_02415"
     CDS             496..1359
                     /gene="bla"
                     /locus_tag="VE686_02415"
                     /EC_number="3.5.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010968965.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008800 - beta-lactamase activity
                     [Evidence IEA];
                     GO_process: GO:0030655 - beta-lactam antibiotic catabolic
                     process [Evidence IEA];
                     GO_process: GO:0046677 - response to antibiotic [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class A beta-lactamase"
                     /protein_id="HYY83339.1"
                     /translation="MPVLISRRAALAAALLAASGGAPRPAWAQDSAFSALERRHGGRL
                     GVAVLDTGSGRRMAHRPEERFAMASTFKFLAAAFVLARCDKGEERLQRRIAFAQQDLV
                     TYSPITAKHVGEGGMTVAKLCEAAVTLSDNTAANLLLASFGGPAGLTAYVRSLGDETT
                     RLDRIETALNEAAPGDPRDTTTPAAMLGTMQKLLVGEALTHASREQLTAWLVANKTGE
                     QRLRAGVPQGWRVGDKTGTGGHGATNDIGILWPPGRAPILVAAYFAEAQASDLERSAI
                     LAEVGRIAAAA"
     gene            1511..1810
                     /gene="rpmB"
                     /locus_tag="VE686_02420"
     CDS             1511..1810
                     /gene="rpmB"
                     /locus_tag="VE686_02420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012455029.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000311 - plastid large ribosomal subunit
                     [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L28"
                     /protein_id="HYY83340.1"
                     /translation="MSRRCELTGKAVLSGHLVSHSNRKTKRKFLPNLCRVTLQSDALG
                     RSVRLRIAAASLRSVEHRGGLDAFLAKASETELSQNARELKREIAKKVAASAAAA"
     gene            complement(1878..>3241)
                     /locus_tag="VE686_02425"
     CDS             complement(1878..>3241)
                     /locus_tag="VE686_02425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009763112.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="SLC13 family permease"
                     /protein_id="HYY83341.1"
                     /translation="SFGALLGGLITLIGTSPNIIVSRLRTELVGEPFGMFDFAPVGLG
                     LAAAGVTFLAFGYRLLPGGRKPSARLDEALDIKDYVTEARITPDSPVVGHTVAELKKL
                     SENEVQVTGIIRNKTQQLTPLPDAVLRQDDIVLLQGNPEALERAVARSDLELEGEDRP
                     TEAQDPTDEVGVAEAVVGPTSLLIRHTPGEIALHERYGVNLLAISRSGERFTERLRDI
                     RIRNGDVVVLQGNLSHIPEKLRELGCMPLAMRDLRLGRMRRGIVPLSVLGGAMVLTAV
                     GVLPVAVAFFTAAALMVGLRALTLREAYEAIDWPILIMLGALIPVSETIQTTGGAQVI
                     GHALSAFAGTLPAYGAVALIMVAAMAVTPFLNNAATVLVMAPIAASFAGQLGYKPDPF
                     LMAVAVGAACDFLTPIGHQCNTLVMGPGGYKFGDYWRLGLPLSVLVVLLGVPLILAVW
                     AVR"
BASE COUNT          515 a         1147 c         1116 g          463 t
ORIGIN      
        1 cggcacgatc tccagttgcg ccacattgcc ctgggcgagc accatgcgca cggcgacctg
       61 gctcgacgag gtgcgggagg tcaaagcgaa gctcgccggg accggctggc cgccggcgag
      121 cgatcccgac gcgaccgcgc cgcccttgcc gctggcgaac acgcccgcga gccccgtggt
      181 acgcgcctgg atctgcgtct tgtagctcgt gccgtcgatg ctgctgacga ggtcggcggt
      241 cgcgatcgga aagcccgcga gcgtcacggc gtagtcggcc ttgaaggtcg ccgcttcagc
      301 cgaccgggcg gcgagcgcca aggctgccgc gccaagcgcg gccccaagcc ccgttgccaa
      361 gcgtgtcatc gcgtccctct cgtctggatc cgagcgcttg ggcccgaaat cgggagaatt
      421 ggaggccgaa gcgtccgtga aatcgccttg cagcgcagcg gtcggggact taacgcgggg
      481 ctgcaggaga tcgccatgcc tgtcctgatc agccgccgcg cggccctcgc cgccgccctg
      541 cttgccgcat cgggtggcgc acctcgccct gcctgggcgc aggactccgc cttcagcgcg
      601 ctggagcggc gccatggcgg gcgcctcggg gttgcggtgc tcgacacggg cagcgggcgg
      661 cgaatggcgc atcggcccga agagcgcttc gccatggcga gcacgttcaa gttcctcgcg
      721 gccgccttcg tactggcccg ctgcgacaag ggcgaggagc gccttcagcg ccgcatcgcc
      781 ttcgcgcagc aggatctcgt gacctactcc cccatcacgg cgaagcacgt cggcgaaggc
      841 ggcatgacgg tggcgaagct gtgcgaagcc gccgtcacgc tcagcgacaa caccgccgcg
      901 aacctcctgc tcgcgagctt cggcgggccc gcgggcctga cggcctacgt ccgctcgctc
      961 ggcgacgaga cgacccggct cgaccgcatc gagacggcgc tgaacgaggc cgcgcccggc
     1021 gatccgcgcg ataccaccac gccggccgcc atgctcggaa ccatgcagaa gctcctcgtc
     1081 ggcgaggcgc taacgcatgc ctcgcgcgag caactgaccg catggctcgt cgccaacaag
     1141 acgggcgagc aacgcctgcg cgccggggtt ccccagggct ggcgcgtcgg cgacaagacc
     1201 ggcacgggcg ggcacggcgc gacgaacgat atcggcatcc tatggccgcc tggccgcgcc
     1261 ccgatcctcg tcgccgccta cttcgccgag gcgcaagcct cggacctcga gcgcagcgcc
     1321 atcctcgccg aggtgggtcg gatcgccgcc gcggcgtaag gcaccgcatt tcttgacgcc
     1381 tgcgggcgcg tgctctatac gccgcgcctc agcttcagga ctaaagagcg tgcggtcgtc
     1441 gcgcgtggct ctcgcgggag ccttgagcgc gaccttcgac cgtgccgcaa catcaaacgg
     1501 gatcaagacc atgtcgcgcc gctgcgaact gaccggcaag gccgtgctgt cgggacacct
     1561 cgtcagccac tcgaaccgca agaccaagcg caagttcctg ccgaacctgt gccgcgtcac
     1621 gctgcagtcg gatgcgctcg gccgctcggt gcgcctgcgc atcgccgccg cctccctgcg
     1681 ctcggtcgag caccgtggcg gcctcgacgc tttcctcgcc aaggcctccg agacggagct
     1741 gtcgcagaac gcccgcgagc tcaagcgcga gatcgccaag aaggtcgccg cctctgccgc
     1801 ggccgcctga ggcagcacgc catagggact tctgaaaggg cggctctcgg gccgcccttt
     1861 ccgtttgcgg gccccgctta gcgcaccgcc cagacggcga ggatgagcgg cactccgagc
     1921 agcaccacca ggaccgagag cggcagtccg agacgccagt agtcgccgaa cttgtagccg
     1981 cccgggccca tgacgagggt gttgcactgg tggccgatgg gcgtgaggaa gtcgcaggcg
     2041 gctccgaccg ccacggccat gaggaacggg tccggcttgt agccgagctg tcccgcgaag
     2101 ctcgcggcga tcggcgccat cacgagcacg gttgcggcgt tgttgaggaa tggcgtgacc
     2161 gccatggcgg cgaccatgat gagcgccacg gccccatagg ccggcagcgt gcctgcaaac
     2221 gccgacagcg cgtggccaat gacctgcgcg ccgcccgtgg tctgaatggt ttcgctgacc
     2281 gggatcagag ccccgagcat gatcaggatg ggccagtcga tagcctcgta ggcctcccgc
     2341 aacgtgagcg cccgcaggcc taccatcagg gccgcagccg taaagaaggc caccgccacc
     2401 gggagcacgc caaccgcggt gagcaccatg gcgccgccga gcacgctcag cggcacgatg
     2461 ccccggcgca tgcggccgag ccggagatcc cgcatggcga gcggcatgca gccgagctcg
     2521 cgcagcttct cggggatgtg gctcaggttg ccctgaagca ccacgacgtc gccgttgcgg
     2581 atccggatgt cgcgcagacg ctcggtgaag cgctccccgc tgcggctgat cgccaggagg
     2641 ttgacgccat accgctcgtg cagggcgatc tcgcccggcg tgtgccggat gaggagggag
     2701 gtcggtccga cgaccgcctc ggcgacgccg acctcgtcgg tcggatcctg ggcttccgtc
     2761 gggcggtcct cgccttcgag ctcgaggtcg gagcgagcga ccgcccgctc gagcgcctcg
     2821 ggattccctt gcaggaggac gatatcgtct tgccggagca ccgcgtccgg cagcggcgtg
     2881 agctgttgcg tcttgttgcg gatgatgccc gtgacctgca cctcgttttc ggacagcttc
     2941 ttcagctccg cgaccgtatg gccgaccacg ggggaatccg gggtgatccg ggcttcggtg
     3001 acgtaatcct tgatatccag cgcctcgtcc aaccgcgcgc tcggcttgcg gcctcccgga
     3061 agcaggcggt aaccgaaggc gaggaaggtg acccctgcgg cggccagtcc gagtccgacg
     3121 ggagcgaagt cgaacatccc gaacggctcg ccgacgagct cggtgcgcag ccgcgagacg
     3181 atgatgttgg gcgaggttcc aatgagcgtg atgagccctc caagcagcgc gccgaacgac
     3241 a
//
LOCUS       DASQWN010000131         3877 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1311401, whole genome shotgun sequence.
ACCESSION   DASQWN010000131 DASQWN010000000
VERSION     DASQWN010000131.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 3877)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3877)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3877
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1311401"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            883..1659
                     /locus_tag="VE686_02430"
     CDS             883..1659
                     /locus_tag="VE686_02430"
                     /EC_number="2.1.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF013382.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HYY83342.1"
                     /translation="MWASGDYPGMVETFLLPLGPRLVEACRIGEGMRVLDVAAGTGNA
                     SIPAAQAGAEVTASDLTPELLTAGRKRAQEAGVELDWVEADAENLPFEDESFDVVMSS
                     IGAMFAPFHQQVADELVRVCRADGTIGMLNWTPEGMIGALFRAMGPFAPPPPSGAQPP
                     PLWGSEDHVREMFGDRVDLHTLERDTLEVTAFEQPQDYGEHFKSKYGPTIAARANAEK
                     EGREGELDAALSVFCDEWNLGTPERARFEQEYLVVVGTRR"
     gene            1665..2810
                     /locus_tag="VE686_02435"
     CDS             1665..2810
                     /locus_tag="VE686_02435"
                     /inference="COORDINATES: protein motif:HMM:NF013253.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-hydroxy-acid oxidizing protein"
                     /protein_id="HYY83343.1"
                     /translation="MSRRELAAVGSASPPKIPSDLSRLEDRAAQVLEPESLAYILAGA
                     GNGETMRANAKAFRGWRIRRRKGPSHAAPDLSSRVLGTRMPAPVLFAPIGVQKLAHPD
                     GELASARAAADLGLTYIHSTQGAHSMEEVAVANGRGSRWYQLYWPTDDELAVSFLRRA
                     RAAGYTHLVITLDTTLLGWRPLDLDRGYTPFLENLGIANFTSDPVFQRRLRVPADVDP
                     VAAGAAFASVFQNPGLSWKQLPLIRRNWDGPILLKGIQSVQDAQLAVKHRIDGIVVSN
                     HGGRQVDGAIASLDALPPIVEAVGDRLAVLFDSGIRTGTDTFKALALGADAVLIGRPY
                     VYGLALAGRAGVMRVMKTLLAELERTLARNGYRSHRELGRTALARVR"
     gene            2939..>3877
                     /locus_tag="VE686_02440"
     CDS             2939..>3877
                     /locus_tag="VE686_02440"
                     /inference="COORDINATES: protein motif:HMM:NF013253.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-hydroxy-acid oxidizing protein"
                     /protein_id="HYY83344.1"
                     /translation="MGTPAEPSTYYAYQSEIYFGGMVRGVIPKFTTNLSKLEAQASKV
                     LDRQAREYFLASAGGGVAARANARAFRGWRIIPRMFRAHANRDLSTKILGTRMPAPVI
                     LAPVGRQRLAHPDGELASARAASSLELTYVQSAQAGSSIEEVAAANGTGSRWYQLDWP
                     DEDDLDARRLRRAGSAGYTHLLLTPPPPGRSWKALRPIRRRWDGPIVVMGIQTVRGAK
                     IALERGFDGIVVSNHRGRRGGRGIGSVDALSPIAEAVGDRLAVLFDSGIRTGPDMFKA
                     LALGADAVLVGRPYVYGLALDGQAGVTHVMRTLLAEF"
BASE COUNT          566 a         1389 c         1337 g          585 t
ORIGIN      
        1 agtggtcttt gtcccacggc cggcacccga gctcggccga gctttcccca ggcggcccga
       61 cctcgatcag accttctacg gcgctgaccc gttgctcggt gtctgggccg cgtcatgcgc
      121 ccgaggccga gtggccggca aacgcgtcga ccggatcgtc ctgtcactgg tcggcgtgcc
      181 cgtagggctc accgcctccg gggcgcctcc gctcgccaac ttcttcgctc acgccctgat
      241 ccgggccgac accaactcac ggccactggt cgcgcgtctg cgtcgcgccg gcctgcccgc
      301 acggttcgca cctgcggcgc gctttcggca ctcacggccc ggagtcgtgc cgttcagtgg
      361 agcgctcgac attcctggtc gataccggct cgaggtcaac gcagtcgcac ccgacccaac
      421 caacccacat cggcactcga accgcttctc ctaccgcgct cggaccggga gcgcagcgcg
      481 gttcggcctg gcgaccgctc ccgccttcga tcgcttctgc ttcccgacag ccggaggctg
      541 cacagcgctc gtggcggcac cgcccggctc cgccatggcg aacctgctcg gcggcacgag
      601 cgctacggcc agggtcggct tcgaccacgc ccggctcgcc cggctcggct tgagtcccct
      661 tccgcgtggg accgcgaggc gatgaccgtc aacaggctcg gcaggcgctc gccgtccgcc
      721 gccccgggga gctagaggcc cgctggtaga gcacagttgc tcgccggcgc tggcagaagt
      781 ttgccggatc ggagccggcc gcggtagggt ccggcgcgtc cacaagcacg ggggtagggc
      841 ttgacgactg ggaactctga actgaagggc cggcatcgca agatgtgggc atccggcgat
      901 tacccgggaa tggtggagac cttcctgctg ccgctcgggc cgcggctcgt cgaggcgtgc
      961 cggatcggag agggcatgcg cgtgctcgac gtcgctgccg ggacgggcaa cgcctcgatc
     1021 ccggctgctc aagccggcgc cgaggtgacc gcgagcgacc ttacgcccga gcttctcacc
     1081 gccggccgca aacgggcgca ggaggccggc gtcgagctcg actgggttga ggccgacgcc
     1141 gagaacctgc ccttcgagga cgagtccttt gacgtcgtca tgtcgtcgat cggcgcgatg
     1201 ttcgcgccgt ttcatcagca ggtggccgac gagctggtgc gcgtctgccg cgcggacggg
     1261 acgatcggga tgctcaactg gacgcccgag gggatgatcg gcgcactctt tcgcgccatg
     1321 ggcccattcg cgccgcctcc gccgtcgggc gcgcagccgc cgccgctctg gggcagcgag
     1381 gaccacgtcc gtgagatgtt cggtgatcgc gtcgacctgc acacgctcga gcgcgacacg
     1441 ctcgaggtca cggccttcga gcagccgcag gattacggcg agcacttcaa gtccaagtac
     1501 ggaccgacga tcgccgcgcg ggcgaacgcc gagaaggagg gtcgggaggg ggagctcgac
     1561 gcggccctga gcgtcttctg cgacgagtgg aacctcggca cgcccgagcg ggcgcgcttc
     1621 gagcaggaat acctggtcgt cgtcggcacg cgccggtaac gcctgtgtct cggcgcgagc
     1681 tcgccgccgt cggctcggcg tcaccgccga agattcccag cgatctctcg cggctggagg
     1741 accgggccgc ccaggtcctc gaacccgagt ctctggcata catccttgcg ggggccggca
     1801 acggcgagac catgcgggcg aacgcgaagg ccttcagggg gtggcggatc agacggcgaa
     1861 agggtcccag ccacgcggcg cctgacctgt cctcgcgcgt cctgggaacg cgcatgccgg
     1921 ccccggtgct gttcgcgccg atcggcgtcc agaagctggc acatccggac ggagagctgg
     1981 ccagtgcccg cgccgccgcc gacctcgggc tgacgtacat ccactcgacc cagggcgcgc
     2041 actccatgga agaggtagcc gtcgcaaacg ggcgtggatc gcgctggtac cagctctact
     2101 ggccgacgga cgatgagctg gccgtgagct tcctgcgacg tgctcgggcc gccggctaca
     2161 cccacctcgt gataacgctc gacacgactc tgctgggctg gcggccactc gatctcgacc
     2221 gcggctacac gccgttcctg gagaacctcg gcatcgccaa cttcaccagc gacccggtgt
     2281 tccaacgccg gctcagggtg ccggccgacg tggaccccgt ggccgccggc gccgccttcg
     2341 cgtccgtgtt ccagaacccc ggcctgagct ggaagcaact gccgctgatc cgccggaact
     2401 gggacggtcc gatcctgctg aagggcatcc agagcgtcca ggacgcgcag ctcgcggtca
     2461 agcaccgcat cgacggcatc gtggtctcaa atcacggcgg ccgtcaggtc gacggcgcca
     2521 tagcgtcact cgacgccctg ccgccgatcg tcgaggcggt cggcgatcgg ctcgcagtcc
     2581 tgttcgattc cggcatccgc accggcacgg acaccttcaa ggcactggcg ctgggagccg
     2641 acgcggtcct aattggcaga ccgtacgtgt acggactcgc cctggccggg cgagccggcg
     2701 tcatgcgtgt catgaagacg ctgctggcgg agttggagcg cacgctcgcc cgcaacggct
     2761 acagaagcca tcgagagctc ggccgcaccg ctctggccag ggttcgctga gcggggcgtc
     2821 gggcatgtcc gagcacacac gtcggcagtt catcgggtcg gttgggtcgg ccgccgcgac
     2881 cacggtcctc gccccgggcg cgatcgccgc cgcgcgcggg gcgcccgcgc aagccggcgt
     2941 gggcacgccc gccgagccct ccacgtacta cgcctaccaa tccgagatct acttcggcgg
     3001 gatggtgagg ggcgtcatcc ccaagttcac caccaacctc tccaagctgg aggcccaggc
     3061 ctcgaaggtc ctcgaccggc aggctcggga gtacttcctg gccagcgcag gaggcggcgt
     3121 ggccgcgaga gcgaacgctc gagcatttcg tggctggcgg atcatccctc ggatgttccg
     3181 cgctcacgcg aaccgcgacc tgtcgaccaa gatcctgggc acccgcatgc ccgcgccggt
     3241 catcctcgcg ccggtggggc gccagaggct cgctcacccg gacggtgagc tggccagcgc
     3301 gcgggccgcg agctccctgg agctcacgta cgtccagtcg gcacaggccg gctcttccat
     3361 cgaggaggtc gccgccgcca acggcacggg ttcgcgctgg tatcagctcg actggcccga
     3421 tgaggacgat ctggacgcgc gccgcctgcg gcgcgcggga tccgcgggct atacgcatct
     3481 tctgctgaca cccccgcctc cgggacggag ctggaaggca ttgcggccga tccgcaggcg
     3541 ctgggacggc ccgatcgtgg tgatgggaat ccagaccgtc cgaggcgcga agatcgcgct
     3601 cgagcgcggt ttcgacggca tcgtggtgtc aaatcaccgc gggcgccgag gcggccgcgg
     3661 tatcggatcg gtcgacgccc tgtcgccgat cgcggaggcc gtcggcgatc ggctcgccgt
     3721 cctgttcgat tccggcatcc gcaccggccc ggacatgttc aaggcgctcg cgctcggcgc
     3781 ggacgccgtc ctggtcggtc gcccctacgt ctacggcctc gcgctggacg ggcaggcggg
     3841 cgtcacccat gtcatgcgga cgctgctggc cgagttc
//
LOCUS       DASQWN010000132         2304 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_109821, whole genome shotgun sequence.
ACCESSION   DASQWN010000132 DASQWN010000000
VERSION     DASQWN010000132.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2304)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2304)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2304
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_109821"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..944
                     /locus_tag="VE686_02445"
     CDS             <1..944
                     /locus_tag="VE686_02445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012253841.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005507 - copper ion binding [Evidence
                     IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="multicopper oxidase domain-containing protein"
                     /protein_id="HYY83345.1"
                     /translation="LIVEEREPPRLDAEFALVIDDWRVDESGALAPFGAVADASTTGR
                     LGNVLTVNAGAAPHALQVAPGARIRLRIANACNARAMRIRFDGLRAYIAAIDGQPTDT
                     FEPLRATVPFAPGSRYDVLIDMPAEAGAKGALVALLGHGTPLVAIETGGEPASQRRPA
                     LPAIAPLSPNKLLPPEIKLQNAVRKSLVIEGGAIRGPDGQYAYKGDPSRIWTINGAPG
                     SAERPMFSTKRGLPVVLRIENRTPAIQPLHLHGHVMRLLHERDDGWEPYFLDTVQVPE
                     ARTIHVAFLADNPGKWAISSTVLERFDTGLWTWFEVT"
     gene            complement(1041..>2304)
                     /locus_tag="VE686_02450"
     CDS             complement(1041..>2304)
                     /locus_tag="VE686_02450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012253804.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0052855 - ADP-dependent NAD(P)H-hydrate
                     dehydratase activity [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="NAD(P)H-hydrate dehydratase"
                     /protein_id="HYY83346.1"
                     /translation="LLREPGALRGDAAQAAAGWNRPVEPLSAADPSAADVIVDALFGA
                     GLARDLDGEARAAVERVNAAGRPVLAIDVPSGIDGDTGEVRGVAIRAAATITFVRRKP
                     GHLLFPGRAYCGPVEVADIRISAATVRATASTTFVNHPDLWTAGLPRLSVEGHKYGRG
                     HALVLSGDATHTGAARLAAGAALRAGAGLVTVASPSDALAVNAAHLTAVMLRRCDGPA
                     DLAGILSDARFSAVAMGPALGVGQTTRDLVLAACAAGPALVLDADALTSFTGDAAALG
                     QALAAGGSRAVLTPHDGEFARLFKGEADVLDPPSKLERARRAAARMGAVLVLKGPDTV
                     IAAPDGRAAINENASPYLATAGSGDVLTGMVAGLLAQGMPPFEAACAAVWLHAEAGAR
                     FGPGLIATDLPELLPGVLRALLGETARP"
BASE COUNT          337 a          847 c          822 g          298 t
ORIGIN      
        1 tgctcatcgt ggaggaacgc gagccgcccc gcctcgacgc cgagttcgcg ctcgtcatcg
       61 acgactggcg cgtcgacgag agcggcgccc tggcgccctt cggagccgtc gccgacgcct
      121 cgaccaccgg ccggctcggc aacgtcctga ccgtcaacgc cggagcggcg ccgcacgccc
      181 tgcaggtcgc gcccggcgcg cgcattcgcc tgcgcatcgc caatgcctgc aacgcccgcg
      241 ccatgcgcat ccgcttcgac gggctcaggg cctacatcgc cgccatcgac ggccagccga
      301 ccgatacctt cgagcccctg cgagccaccg tgccatttgc gccgggcagc cgctacgacg
      361 tcctcatcga catgcccgcc gaggccggcg ccaagggagc gctcgtggcg cttctcggcc
      421 acggcacccc cctcgtggcc atcgagacgg gcggcgagcc ggcttcgcaa cggcggccgg
      481 ccctgcccgc gatcgcgccg ctctcgccga acaagctgct gccgcccgag atcaagctcc
      541 agaacgcggt gcgcaagagc ctggtcatcg agggcggagc gatccgtggg cccgacgggc
      601 agtacgccta caagggcgat ccgagccgga tctggacgat caacggcgcc cccggctcgg
      661 ccgagcggcc gatgttcagc accaagcgcg ggctgccggt cgtgctcagg atcgagaacc
      721 gcacgccggc gatccagccg ctgcacctgc acggccacgt catgcgcctc ctgcacgagc
      781 gcgacgacgg ctgggagccc tatttcctcg acacggtgca ggtgcccgag gcccgcacga
      841 tccacgtggc gttcctcgcc gacaacccgg gcaagtgggc gatctcctcg acggtgctcg
      901 agcgcttcga caccggcctc tggacctggt tcgaggtgac ctgagcggca gaacgattac
      961 cgcgcaccat gatcatcgcc cgagggagcg gttttgcgcg ggatgcgcat cattatcacc
     1021 gtcagctcga gtggcgtgcg tcacggccga gccgtctcgc cgagcagcgc gcggagcact
     1081 cccggcagca gctccgggag gtccgtcgcg atgaggcctg ggccgaagcg cgcgccggcc
     1141 tcggcgtgca gccagacggc ggcgcaggct gcctcgaagg gcggcatgcc ttgcgccagg
     1201 aggcccgcga ccatgccggt gagcacgtcg ccggagcccg cggtcgcgag atagggcgag
     1261 gcgttctcgt tgatggccgc gcgcccgtcg ggcgcggcga taacggtgtc gggtcctttg
     1321 aggaccaaca ctgcacccat gcgcgcggcg gcgcggcggg cgcgctcgag cttcgaggga
     1381 ggatcaagga catcagcttc gcccttgaac aggcgggcga attcgccgtc gtgcggcgtc
     1441 agcacagccc ggctgccgcc cgcggcgaga gcctgcccta atgctgcggc gtctcccgtg
     1501 aagctcgtca gcgcgtcggc gtcgaggaca agggccggcc ccgctgcgca ggcggcgagc
     1561 acgaggtcgc gcgttgtctg cccaaccccg agcgccggcc ccatggctac ggcgctgaaa
     1621 cgcgcgtccg acaggatccc ggccaagtcg gccgggccgt cgcagcggcg gagcatcacg
     1681 gccgtcagat gcgctgcgtt gaccgcgagc gcgtcggacg gcgaggcaac cgtgacgagg
     1741 ccggcgcccg cgcgtagggc agcgcctgca gcgagccgtg ccgcgccggt gtgcgtcgcg
     1801 tcaccggaga gcacgagcgc gtggccgcgc ccgtatttgt ggccctccac ggacagtcgg
     1861 ggaagcccgg ccgtccagag gtccgggtga ttgacgaagg tggttgacgc ggtcgccctg
     1921 accgtcgccg cgctgattcg gatgtccgcc acctcgacgg gaccgcagta ggcccggccg
     1981 gggaagagca ggtgaccggg cttccgccgc acgaaagtga tggttgcggc tgcacgaatc
     2041 gcgacacccc tcacctctcc ggtatcgccg tcgatgcccg acggcacgtc aatggcgagc
     2101 acgggacggc ccgcggcgtt gacgcgctcg acagcggcgc gcgcctcccc gtccaagtcg
     2161 cgggccagcc cggccccgaa gagcgcgtcg acgatgacgt ccgctgcgct ggggtcggcg
     2221 gcgctcaagg gctcgactgg ccgattccag cccgccgcgg cctgagcggc gtcgccccgg
     2281 agcgcgccgg gttcgcggag gagc
//
LOCUS       DASQWN010000133         6462 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1212383, whole genome shotgun sequence.
ACCESSION   DASQWN010000133 DASQWN010000000
VERSION     DASQWN010000133.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 6462)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6462)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6462
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1212383"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1972
                     /locus_tag="VE686_02455"
     CDS             <1..1972
                     /locus_tag="VE686_02455"
                     /EC_number="2.7.7.59"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009763618.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008773 - [protein-PII]
                     uridylyltransferase activity [Evidence IEA];
                     GO_process: GO:0006807 - nitrogen compound metabolic
                     process [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="[protein-PII] uridylyltransferase"
                     /protein_id="HYY83347.1"
                     /translation="EQALFARCEEFLWRVRCHLHFVTGRAEERLSFDVQRKVAERVGL
                     SPRAGLSPVERFMKAYFLTAKDVGDLTAIVCAELEARQAKRRPMLDRMLGRFRRRRGG
                     ALEADDFVIDNNRINVSDDDAFARDPVNLIRLFWLADRHNLPTHPDATRLATRSLKRI
                     SPAVRRDPEANRLFLDILTSRNAPEVVLRHMNETGVLGRFVPEFGRVVAMMQFNMYHH
                     YTVDEHLIRSIGVLAEIDGERSGHAHPLANSIVHTIQNRRALYVALFLHDIAKGRPED
                     HSIAGAAIARTLGPRFGLDAAETDTAAWLVEHHLLMSTIAQSRDLSDPKTIESFARVV
                     QTMERLKLLLVLTIADIKAVGPGVWTGWKGELLRALYHETETVLGGGQTDLARGERVR
                     RAQEELRTSLADWPDGAFAAYVHRHYPPYWLKVEHPRQVKHARFVRDAEEAGRSVATA
                     FETDHFRGVTELTVMSPDHPRLLAIVTGACAAAGGNIVDAQIFTTVDGMALDTIFVSR
                     AFDRDEDELRRAERVATGIARALKNEVKIADLVAGKRPPKERQKTFHVAPEVVIDNSL
                     SNRHTVLEVTGLDRPGLLYDLTTALGKLNLNIASAHIATFGEKAVDSFYVTDLTGTKV
                     VHPGRQAAIRRALMEALASEPDAEPQARAAAR"
     gene            2044..2673
                     /gene="grpE"
                     /locus_tag="VE686_02460"
     CDS             2044..2673
                     /gene="grpE"
                     /locus_tag="VE686_02460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009211149.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000774 - adenyl-nucleotide exchange
                     factor activity [Evidence IEA];
                     GO_function: GO:0042803 - protein homodimerization
                     activity [Evidence IEA];
                     GO_function: GO:0051087 - protein-folding chaperone
                     binding [Evidence IEA];
                     GO_process: GO:0006457 - protein folding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotide exchange factor GrpE"
                     /protein_id="HYY83348.1"
                     /translation="MQNDTAENARPDGAPIGEPANDVGFETPGAPEPGDDRVAALEAE
                     RTDLKDKLLRTLADMENMRRRTERELADIRTYGVTNFARDMLTVADNIRRALESVPSD
                     AREQADGALKGLVDGIELTERDLLKTLERHGVKRLDPEGQKFDPNMHQAMFEVPNPDV
                     PAGTVVQVVQTGYSIGERVLRPALVGVAKGGPKATASGSSEAADGAPAA"
     gene            complement(2685..3617)
                     /locus_tag="VE686_02465"
     CDS             complement(2685..3617)
                     /locus_tag="VE686_02465"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY83349.1"
                     /translation="MRRLAFPALCAFLAAATAAGAADAVFPPGSRIGLVPPPGMVVSK
                     RFVGFESPRGAAITLVEMPVGAAEQARATLTLEALQNQNISMKEREELKVGDAPAVLV
                     TGEQQAGPGIVRKWILLASEPSLTALVIAQAVNGAEAYSDAEIRDALKSVAVRQPPSM
                     EDQLASLPFRVGDRAGLKPVRTAGASLLLTDRGEQGGVETGQAVMIVAQSADPGAGPD
                     QRDAFAAAMLRSNVSLKEMIFERAQGFRQRGAEWHEIVARAKDAGSGKPVIVMQTIRW
                     DRGSFLRMLGVAPEEARDDILSRFRTLADSVSPE"
     gene            complement(3686..4198)
                     /locus_tag="VE686_02470"
     CDS             complement(3686..4198)
                     /locus_tag="VE686_02470"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012482305.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0016747 - acyltransferase activity,
                     transferring groups other than amino-acyl groups [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HYY83350.1"
                     /translation="MTDVRLLSAADAERERDALSEVLADCVAGGASVSFMAPFSTADA
                     HAWWGGVIASVAADKTVLFGAYIDAVLVGTVQLGLDVPPNQPHRGDVKKLLVHRRARG
                     RRLGRALMEALEAEARRRSLTLLTLDTASEAAERVYEGLGYTRAGVIPGYALWPEGGL
                     CDTTLFWKSL"
     gene            complement(4195..4815)
                     /locus_tag="VE686_02475"
     CDS             complement(4195..4815)
                     /locus_tag="VE686_02475"
                     /EC_number="5.4.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012592759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004619 - phosphoglycerate mutase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2,3-bisphosphoglycerate-dependent
                     phosphoglycerate mutase"
                     /protein_id="HYY83351.1"
                     /translation="MDRLLVLARHGQSEWNLKNLFTGWKDPGLTDLGVEEARTAGRRM
                     KALGLTFDIAFTSALSRAQETLRLMLEEIGQPGLETIRDQALNERDYGDLSGLNKDDA
                     RKRWGEDQVHLWRRSYDVPPPGGESLKDTVARALPYYVQEILPRVMAGERVLVAAHGN
                     SLRALVMVLDRLTPKTIPGLELATGIPLVYRLKGDTTVESKQVLDA"
     gene            complement(4883..6193)
                     /gene="paaK"
                     /locus_tag="VE686_02480"
     CDS             complement(4883..6193)
                     /gene="paaK"
                     /locus_tag="VE686_02480"
                     /EC_number="6.2.1.30"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016557512.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0047475 - phenylacetate-CoA ligase
                     activity [Evidence IEA];
                     GO_process: GO:0010124 - phenylacetate catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phenylacetate--CoA ligase PaaK"
                     /protein_id="HYY83352.1"
                     /translation="MLDLTPERSILDPIEVASRDEIAALQRDRLRWSLRHAYDNVAHY
                     RRTFDEAGVHPDDFRELSDLARFPFTTKQHLRENYPFGMFAVPQERIARIHASSGTTG
                     KPTVVGYTKGDVDVWSDLMARSIRASGGRPGMKVHVAYGYGLFTGGLGAHYGAERLGC
                     AVVPVSGGMTERQVQLIQDFAPDIIMVTPSYMLAILDEFRAKGIDARATSLKVGIFGA
                     EPWTNAMRAEIEDAFAMHAVDIYGLSEVMGPGVANECVETKDGLHVWEDHFYPEIIDP
                     KTGAVLPDGEVGELVFTTLTKEGMPVVRYRTRDLTRLLPGTARSMRRMEKVTGRSDDM
                     LIIRGVNVFPTQVEEQILRCAGLSAHYQIEVTREARLDEMRVVVEAREDHADEASRTA
                     QGGLLARYIKDLVGVSAAVAVVDPGSIERSLGKAKRVVDKRPRE"
BASE COUNT          980 a         2286 c         2270 g          926 t
ORIGIN      
        1 ggagcaggcc ctcttcgcgc gctgcgagga gttcctgtgg cgcgtgcgct gccaccttca
       61 tttcgtcacc ggccgcgccg aggagcgcct gagcttcgac gtgcagagga aggtcgcgga
      121 gcgcgtcggg ctgtcgccgc gggccgggct gtcgcccgtc gagcgcttca tgaaggccta
      181 cttcctcacc gccaaggacg tgggcgacct caccgcgatc gtgtgcgccg agctcgaggc
      241 gcggcaggcg aagcgccgtc ccatgctcga ccgcatgctc ggccgcttcc gccgccgccg
      301 gggcggcgcg ctcgaggccg acgacttcgt catcgacaac aaccgcatca acgtgagcga
      361 cgacgacgcc ttcgcccgcg accccgtcaa cctgatacgc ctgttctggc tcgccgaccg
      421 gcacaacctg ccgacccatc cggacgcgac ccggcttgcc acgcgatcct tgaagcgcat
      481 cagccctgcc gtgcggcgcg acccggaggc gaaccgcctc ttcctcgaca tcctgacgtc
      541 ccgcaacgcg cccgaggtgg tgctgcggca catgaacgag accggcgtgc tcgggcgctt
      601 cgtgcccgag ttcgggcgcg tcgtcgcgat gatgcagttc aacatgtacc accactacac
      661 ggtggacgag cacctcatcc ggtcgatcgg cgtgctggcc gagatcgacg gcgagcgctc
      721 cgggcacgcg catccgctcg ccaacagcat cgtgcacacg atccagaacc gccgggcgct
      781 ctatgtcgcg ctgttcctgc acgacatcgc caagggccgg cccgaggacc actcgatcgc
      841 gggcgccgcg atcgcgcgca ccctaggccc gcgcttcggg ctcgatgcgg ccgagaccga
      901 cacggccgcc tggctcgtcg agcaccacct cctgatgtcg accatcgcgc agagccggga
      961 cctgtcggat ccgaagacca tcgagagctt cgcccgggta gtgcagacca tggagcgcct
     1021 caagctgctc cttgtcctca ccatcgccga catcaaggcc gtggggccag gggtatggac
     1081 cggttggaag ggcgagctcc tgcgcgccct ctatcacgag accgagacgg tgctcggggg
     1141 agggcagacc gatctcgccc gcggcgagcg cgtgcgccgg gcgcaggagg agcttcgcac
     1201 gtcgctggcc gactggcccg acggggcttt cgcggcctac gtacaccgcc actacccgcc
     1261 gtactggctg aaggtcgagc acccgcggca ggtcaagcac gcccgcttcg tgcgcgacgc
     1321 cgaggaggcg gggcgcagcg tcgccacggc cttcgagacg gaccatttcc gcggcgtaac
     1381 cgagctgacc gtgatgtcgc ccgaccatcc ccggctgctc gccatcgtga ccggcgcctg
     1441 cgcggccgcg gggggcaaca tcgtcgacgc ccagatcttc accaccgtcg acggcatggc
     1501 gctcgacacc atcttcgtgt cgcgggcctt cgaccgcgac gaggacgagc tgcgccgggc
     1561 cgagcgggtg gcgaccggca tcgcccgcgc cctcaagaac gaggtgaaga tcgccgacct
     1621 cgtcgccggc aagcggcccc cgaaggagcg ccagaagacc ttccacgtcg cgcccgaggt
     1681 ggtcatcgac aactctttgt cgaaccgcca cacggtgctc gaggtcacgg gcctcgaccg
     1741 gccgggcctg ctctacgacc tcacgacggc gctggggaag ctcaacctca acatcgcctc
     1801 ggcccacatc gcgaccttcg gcgagaaggc ggtcgattcc ttctatgtca ccgacctcac
     1861 gggcacgaag gtggtgcatc cggggcgcca ggccgctatc cgccgggccc tcatggaggc
     1921 gctcgcgagc gagccggacg cggagcccca ggcgcgcgcc gccgcccgct gaacgcttga
     1981 ttcgcaagcc ctgcggcccg atatgagggg caacaaatcc ccttaacgcg acgtttgaga
     2041 cccatgcaga acgacacggc agaaaacgcg cgccccgacg gggctccgat cggcgagccg
     2101 gcgaacgacg tgggcttcga gacccccggc gcgccggagc ccggcgacga ccgcgtcgcc
     2161 gccctggagg ccgagcgcac cgacctgaag gacaagctcc tgcgcacgct cgccgacatg
     2221 gagaacatgc gccggcgcac cgagcgcgag ctcgccgaca tccgcaccta cggggtgacg
     2281 aacttcgcgc gcgacatgct gacggtggcg gacaacatcc gccgcgccct cgagagcgtc
     2341 ccgagcgacg cgcgcgagca ggctgacggc gccctcaagg gcctcgtgga cggcatcgag
     2401 ctcacggagc gcgacctcct caagaccctc gagcgccacg gggtgaagcg cctcgatccg
     2461 gagggccaga agttcgatcc gaacatgcac caggccatgt tcgaggtgcc gaaccccgac
     2521 gtgccggccg ggaccgtggt ccaggtggtg cagactggct actcgatcgg cgagcgcgtc
     2581 ctgcgcccgg cccttgtcgg ggtcgccaag ggcggaccga aggcgaccgc aagcggctcg
     2641 tccgaggccg cagacggcgc ccccgccgct taaagcgaag cccgctactc gggcgacacc
     2701 gagtcggcca gcgtccggaa gcgggacagg atgtcgtcgc gcgcctcttc gggggcgacg
     2761 ccgagcatgc gcaggaagct gccgcggtcc cagcggatcg tctgcatgac gatgacgggc
     2821 ttgccgctgc ctgcatcctt tgcccgcgcc acgatctcgt gccactcggc cccgcgctgc
     2881 cggaatcctt gggcgcgctc gaagatcatt tccttgaggc tgacgttcga ccgcagcatg
     2941 gcggccgcaa aggcgtcgcg ctgatcgggg ccggcgcccg ggtcggccga ctgcgccacg
     3001 atcatcaccg cctgtccggt ctcgaccccg ccctgctcgc cgcggtcggt gaggagcagg
     3061 gatgcgccgg ccgtgcgcac gggcttgagg ccggcacggt cgccaacccg gaacggcagc
     3121 gaggcgagct ggtcctccat cgacgggggc tgccgcacgg cgacgctctt cagcgcatcg
     3181 cggatctccg cgtcgctgta ggcctcggcg ccgttcaccg cctgggcgat gacgagggcg
     3241 gtcagcgagg gctccgaagc aagaaggatc cacttgcgga cgataccggg cccggcctgc
     3301 tgctcgcccg tgaccagcac cgcgggcgcg tcgccgacct tgagctcctc gcgctccttc
     3361 atggagatgt tctggttctg cagcgcctcg agcgtgaggg tcgcgcgcgc ctgctcggcg
     3421 gcgccaacag gcatctcgac gagggtgatg gccgctccgc gcgggctttc gaagccgacg
     3481 aagcgcttgg agacgaccat gcctggaggg ggcacgagac cgatgcgcga gccgggcggg
     3541 aacacggcgt ccgcggcgcc ggcggcggtc gcggcggcga ggaacgcgca cagggcgggg
     3601 aacgctagac gacgcatcga ggcctccggt cgggcgatcg tgtcagaacc cgcgaaaggg
     3661 gcgaagttgc ggcccggggc gctgcctaga gcgacttcca gaagagagtg gtatcgcaca
     3721 ggccgccttc cggccacagg gcgtagccgg ggatgacgcc cgcccgcgtg tagccgagcc
     3781 cctcgtagac gcgctcggcc gcctcgctcg cggtatccag ggtgaggagc gtgagcgagc
     3841 gccggcgcgc ctccgcctcg agcgcctcca tcagcgcccg gccgagacgg cggccgcggg
     3901 cacggcggtg caccaggagc ttcttgacgt cgccgcggtg gggctggttc ggcggcacgt
     3961 cgaggccaag ctgcacggtt ccgacgagaa ctgcgtcgat gtaggcgccg aacagcaccg
     4021 tcttgtcggc cgcgacgcta gcgatcacgc cgccccacca agcgtgcgcg tcggcggtcg
     4081 agaacggcgc catgaagctc accgacgccc cgcccgcgac gcagtcggcg agcacctccg
     4141 agagtgcatc gcgctcgcgc tcggcgtcgg cggcggagag gagacggacg tcggtcacgc
     4201 gtcgagcacc tgcttcgact cgactgtcgt gtcgcctttc agccggtaga cgagcgggat
     4261 gccggtcgcg agctcgaggc ccggaatggt cttcggcgtc aaccggtcga gcaccatcac
     4321 gagggcgcgc agggaattgc cgtgcgccgc gacgagcacc cgctctcccg ccatgacgcg
     4381 gggcaggatc tcctgcacgt agtagggcag ggcgcgcgcg acggtgtcct tgaggctctc
     4441 gccgcccggc gggggcacgt cgtaggagcg ccgccagagg tggacctggt cctcgcccca
     4501 gcgcttgcgc gcgtcgtcct tgttgaggcc cgagaggtcg ccgtagtcgc gctcgttgag
     4561 ggcctggtcg cggatcgtct cgagccccgg ctggccgatc tcctcgagca tcagccgcag
     4621 ggtctcctgc gcgcggctga gcgccgaggt gaaggcaatg tcgaaggtga gcccgagggc
     4681 cttcatgcga cgcccggcgg tccgtgcctc ctcgaccccg agatcggtga ggcccgggtc
     4741 cttccagccg gtgaagaggt tcttcaggtt ccactcgctc tggccatggc gcgcgagcac
     4801 gaggaggcgg tccatccggg tttgtctccg tcctttgggg caatataccc gtgccgctac
     4861 cccgtgcgcg tcctcggcgc aatcactcgc gcggccgctt gtcgaccacg cgcttggcct
     4921 tgccgaggga gcgctcgatc gagcctgggt cgaccaccgc cacggcggcg ctgaccccga
     4981 cgaggtcctt gatgtagcgg gcgagaagcc cgccctgagc ggtgcgcgag gcctcgtccg
     5041 cgtggtcctc acgcgcctcg acgacgacgc gcatctcgtc gaggcgggcc tcgcgggtga
     5101 cctcgatctg gtagtgcgca gacagcccgg cgcagcgcag gatctgctcc tcgacctggg
     5161 tcgggaacac gttgacgccg cggatgatga gcatgtcgtc ggagcggccg gtcacctttt
     5221 ccatgcgccg catggaacgg gccgtgccgg ggaggaggcg cgtcaggtcc cgcgtgcggt
     5281 agcggacgac cggcatccct tccttggtga gcgtggtgaa cacgagctcg ccgacctcgc
     5341 cgtcgggcag cacggcgccg gtcttcgggt cgatgatctc ggggtagaag tggtcctccc
     5401 agacgtgcag gccgtccttg gtctcgacgc actcgttggc gacaccgggg cccatcacct
     5461 ccgacaggcc gtagatgtcg acggcgtgca tggcgaaggc gtcctcgatc tcggcccgca
     5521 tggcgttggt ccagggttcg gcgccgaaga tgccgacctt gagcgaggtc gcgcgagcgt
     5581 cgatgccctt ggcccggaac tcgtcgagga tcgccagcat gtaggacggc gtcaccatga
     5641 tgatgtcggg cgcaaaatcc tggatgagct ggacctggcg ctccgtcatg ccgcccgaca
     5701 ccgggaccac cgcgcagccg agccgctcgg cgccgtagtg cgccccgagg ccgccggtga
     5761 agaggccgta gccgtaggcc acatgcacct tcatgccggg ccggccgccc gaggcgcgga
     5821 tcgagcgcgc catcaggtcg gaccagacgt cgacgtcgcc cttggtgtag ccgacgaccg
     5881 tcggcttgcc ggtggtgccc gaggaggcgt ggatgcgggc gatgcgctcc tgcggcacgg
     5941 cgaacatgcc gaaggggtag ttctcgcgca ggtgctgctt cgtggtgaac gggaacctgg
     6001 cgaggtcgga cagctcacgg aagtcgtccg ggtgcacgcc ggcttcgtcg aaggtgcggc
     6061 ggtaatgcgc gacgttgtcg taggcgtgcc gcaggctcca gcgcagccgg tcccgctgca
     6121 gcgccgcgat ctcgtcgcgc gacgccacct cgatcggatc gaggatgctg cgctccggcg
     6181 tcaggtcgag cagcttgccc atcacgtcac ctgttgttgt tagccggggt gcgctcccac
     6241 cctccctgaa gggggagggt cgacgtcgcg aagcgacggc ggggtggggt gacaccggtg
     6301 cagatagagt gtggccggcg ccacggcgcc ttctccggag aggctgtcac tccaccccgg
     6361 atcgcctgcc ggcgatccga cgcccccctc caggggaggg tagcgcggcg gcgcgctggc
     6421 atcctacccc ccacccccga gcagcgtgcc ctctatggtc cg
//
LOCUS       DASQWN010000134         3327 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1410887, whole genome shotgun sequence.
ACCESSION   DASQWN010000134 DASQWN010000000
VERSION     DASQWN010000134.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 3327)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3327)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3327
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1410887"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            211..1578
                     /locus_tag="VE686_02485"
     CDS             211..1578
                     /locus_tag="VE686_02485"
                     /EC_number="2.7.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010682606.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016301 - kinase activity [Evidence IEA];
                     GO_process: GO:0016310 - phosphorylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AarF/ABC1/UbiB kinase family protein"
                     /protein_id="HYY83353.1"
                     /translation="MPPEDTEANRFSARAARYARVGANVGGVAARIAGTRLFGMEGQG
                     ASNAAALAQALGGLKGPIMKVAQLLATIPDVIPPEYAAELQKLQSEAPPMGAAFVKRR
                     MQAELGPDWQARFASFDLNPAAAASLGQVHRATAKDGSALACKLQYPDMQSAVEADLR
                     QLEFVFALHRRMDPVIDTREIAQEIGARVREELDYEREAKHAALYRQVLDDVPEVRVP
                     SVAPELSTKRLLTLGWLEGEKLLSFAQAPQEARNRIALAMFKAWWHPFSHAAVIHGDP
                     HLGNYTVFAEAGEAAGINLLDYGCIRIFPPKFVGGVVDLYRGLLHDDRDRVVHAYETW
                     GFKRLSADLIDTLNIWARFIYGPLLEDRVRTIADGVKPSEYGRRQAFEVHRALKERGP
                     VTVPREFVFMDRAAIGLGGVFLHLRAELNFHRLFEDEIDRFSLAHVGETQAAALRRAG
                     LSVPS"
     gene            1673..1966
                     /locus_tag="VE686_02490"
     CDS             1673..1966
                     /locus_tag="VE686_02490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012332951.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aa3-type cytochrome c oxidase subunit IV"
                     /protein_id="HYY83354.1"
                     /translation="MADTKNAPFGGYGPDMDGQAHEATYRGFVRFIEIGVSFVICIML
                     ALAVGGIRHAWLSAVFGVVLAHITTGLGLFAPSLGWRPNAAVAVLLLLMLMMY"
     gene            2056..3192
                     /locus_tag="VE686_02495"
     CDS             2056..3192
                     /locus_tag="VE686_02495"
                     /EC_number="1.6.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004446453.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008746 - NAD(P)+ transhydrogenase
                     activity [Evidence IEA];
                     GO_process: GO:1902600 - proton transmembrane transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Re/Si-specific NAD(P)(+) transhydrogenase
                     subunit alpha"
                     /protein_id="HYY83355.1"
                     /translation="MRIAVLSETDPVESRVAATPETVKKYKGLGAEVVVQAGAGTRAG
                     VPDHEFEAAGAVIAHGPHEAARDADVVLTVRRPGAGEIGALRRGAVAIAIMDPYGQTD
                     ALQALANAGVSAFSMELMPRITRAQVMDVLSSQANLAGYRAVIDGAAEYGRAFPMMMT
                     AAGTVPAARVFIMGVGVAGLQAIATARRLGAVVTATDVRPAVKEQVESLGAKFLAVED
                     EEFKQAETAGGYAKEMSREYLDKQAALVATHIAKQDLVITTALIPGRPAPKLVSRAMV
                     ESMRPGSVVVDLAVERGGNCELAQAGQVVDHNGVKIVGHLNVPGRLAASASALYARNL
                     YAFVETLVDKETKQLAVKWDDELVKATCLTRDGAVVHPAFQPTA"
BASE COUNT          507 a         1177 c         1150 g          493 t
ORIGIN      
        1 ccatggtcgt gcttccgccc gagatgctcg cccggttggg cgtttcgcaa ggcgggcagg
       61 tgatcgccac ggaggaaaat ggcgtactga tgctccggcc gtgacaggcg gaagcgcagg
      121 aaggccgcgc ggacgactga cggacgcatt cggttggcgc aagccagacg gctccttatc
      181 taggggttcc tcccccgccg tcgagtcccg atgccccccg aagacactga agcgaaccgt
      241 ttctcggccc gtgcggcccg ctatgcgcgg gtcggcgcca acgtcggcgg ggtggcggcg
      301 cggatcgccg ggacacggct cttcggcatg gaagggcagg gcgcctcgaa cgcggcggcg
      361 ctcgcgcagg cgctcggggg cctcaaaggc cccatcatga aggtggcgca gctgcttgcc
      421 accatcccgg acgtgatccc gcccgagtac gcggccgagc tccagaagct ccagtccgag
      481 gcgccgccca tgggcgcggc gttcgtcaag cgccgcatgc aggcggagct cgggcccgac
      541 tggcaggcac gcttcgcctc gttcgacctc aacccggccg ccgccgcgtc cctcggacag
      601 gttcatcggg ccaccgccaa ggacggatca gcgcttgcct gcaagctcca gtatccggac
      661 atgcagtcgg ccgtggaggc cgacctgcgg cagctcgagt tcgtcttcgc cctgcatcgg
      721 cgcatggacc cggtcatcga cacgcgggag atcgcgcagg agatcggcgc ccgcgtgcgc
      781 gaggagctcg actacgagcg tgaggcgaag cacgccgccc tctaccgcca ggtcctcgac
      841 gacgtgccgg aggtccgcgt cccctccgtt gcgccggagc tctcgacgaa gcgccttctg
      901 accctcggct ggctcgaagg cgagaagctg ttgagcttcg cgcaagcgcc ccaggaggcg
      961 cgcaaccgca ttgcgctcgc gatgttcaag gcgtggtggc acccgttcag ccatgccgcc
     1021 gtgatccacg gcgacccgca tctcggcaac tacaccgtct tcgccgaagc tggggaggcg
     1081 gcgggcatca acctcctcga ctacggctgc atccgcatct tcccgccgaa gttcgtcggc
     1141 ggcgtcgtcg atctctatcg cgggttgctg cacgatgatc gcgatcgcgt ggtgcacgcc
     1201 tacgagacct ggggcttcaa gcgcctctcg gccgatctga tcgacaccct gaacatctgg
     1261 gcccgcttca tctacgggcc gctgctcgag gatcgtgtgc gcaccatcgc ggacggggtg
     1321 aagccgtcgg agtacggccg ccgccaggcc ttcgaggtgc accgcgcgct gaaggagcgc
     1381 ggcccggtga cggtgccgcg cgagttcgtg ttcatggacc gtgccgccat cgggctcggg
     1441 ggcgtgttcc tgcacctgag ggccgagctc aacttccacc gcctgttcga ggacgagatc
     1501 gaccgcttct cgctcgcgca tgtcggcgag acgcaagcgg ccgcgcttcg ccgcgccggg
     1561 ctctcggtgc catcttgagg cggggatcct tagacggcga acagattgcg gccctccgac
     1621 gcatgcgcta aacgcgccgc aaggaaagat ggcaggcaac caggatcaag cgatggcgga
     1681 cacgaagaac gcccccttcg gcggctacgg cccggacatg gacgggcagg cgcacgaagc
     1741 gacgtaccgg ggcttcgtcc gcttcatcga gatcggcgtc agcttcgtca tctgcatcat
     1801 gctggcgctg gccgtcggcg gcatccgcca tgcatggctc tcggcggtgt tcggggtcgt
     1861 gctggcgcac atcacgacgg gcctggggct gttcgcgccc tcgctcgggt ggcggcccaa
     1921 tgcggcggtc gctgttctgc ttctcctgat gcttatgatg tactgagcgg ggccgttcgg
     1981 cctcagggac acgtggtgat agggcggctc gcgggcgtcg atgcaacctg cgcgccggac
     2041 aaccggggga gtttcatgcg gatcgccgtt ctgtcggaga ctgacccggt tgaaagccga
     2101 gtcgccgcga cccccgagac agtcaagaaa tacaagggat taggtgccga ggtggtggtc
     2161 caggcgggcg ccggcacccg ggccggcgtc cccgaccacg aattcgaggc ggccggggct
     2221 gtgatcgcgc atggacccca cgaggcggcg cgcgacgccg acgtggtcct gaccgtccgc
     2281 cgccccggcg ccggcgagat cggcgccctc cgccgcggcg ccgtcgccat cgccatcatg
     2341 gacccgtacg gccagaccga cgcgctgcag gcgctcgcca acgccggcgt ctcggccttc
     2401 tcgatggagc tgatgccccg catcacccgc gcgcaggtca tggacgtgct ctcctcccag
     2461 gcgaacctcg ccggctaccg cgccgtcatc gacggggcgg ccgagtacgg ccgcgccttc
     2521 ccgatgatga tgacggccgc aggcaccgtc ccggcggccc gcgtgttcat catgggcgtc
     2581 ggcgtcgccg gcctgcaggc gatcgccacg gcgcgccggc ttggcgccgt ggtcaccgcg
     2641 acagacgtgc gcccggccgt gaaggagcag gtcgagtcgc tcggcgccaa gttcctcgcc
     2701 gtcgaggacg aggagttcaa gcaggccgag accgccggcg gctacgccaa ggaaatgtcg
     2761 cgcgagtacc tggacaagca ggccgccctc gtcgccacgc acatcgccaa gcaggacctc
     2821 gtcatcacga cggcactcat ccccggccgg ccggccccga agctcgtctc ccgagccatg
     2881 gtcgagtcca tgcggcccgg ctcggtcgtc gtcgacctcg cggtcgagcg cggcggcaac
     2941 tgcgagctcg cccaggccgg ccaggtcgtc gaccacaacg gcgtgaagat cgtcgggcac
     3001 ctcaacgtgc ccgggcgcct cgccgcgtcc gcctcggcgc tctacgcgcg caacctctat
     3061 gctttcgtcg agacgctcgt cgacaaggag acgaagcagc tcgccgtgaa gtgggacgac
     3121 gagctcgtga aggcgacctg cctcacccgc gacggggccg tcgtccaccc cgcgttccag
     3181 ccgactgcct gacggacagg agacgaccat ggcgacaccc gaacaggccc tcaagcaggc
     3241 gggcgatgcc gcgcgggtcg cgcgcgaggc ggccggcgcg gccgaggtct acgtcgagca
     3301 ggcgtcccag gcgctcgctg ccgcagc
//
LOCUS       DASQWN010000135         3968 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_804632, whole genome shotgun sequence.
ACCESSION   DASQWN010000135 DASQWN010000000
VERSION     DASQWN010000135.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 3968)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3968)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3968
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_804632"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1156)
                     /locus_tag="VE686_02500"
     CDS             complement(<1..1156)
                     /locus_tag="VE686_02500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015951059.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 3 N-terminal
                     domain-containing protein"
                     /protein_id="HYY83356.1"
                     /translation="MVASVAAAFLVAAAPAPADVERQVEDLLARMTLEEKVGQLNLVS
                     AGPEYRPEMVTSGRVGAVINFNDAPDVAAVQRLARQSRLKIPLLVSLDILHGFRTTFP
                     VPLAAAATFDPDLVRRAATAQARETAAMGVQWTFAPMVDISRDPRWGRIVEGAGEDPF
                     LGSAMAAAQVEGFKAGGLATSPKHFAGYGAPEGGRDYDAAQIPPGELRDAFLPPFRAA
                     LRAGSDTIMAALTALNGVPAGVNRWLLTDVLRGEWGFDGFVVSDWAGLQELIGHGVAG
                     NPAEAARKALLAGVDMDMMSGFYDAHLADEVRAGRVPLSAVDAAVRRVLRVKFRAGLF
                     DSPDPDPEHALRSVLTPETRALARAAARESFVLLQNRGEVLPLRTPRSLAV"
     gene            complement(1305..2009)
                     /locus_tag="VE686_02505"
     CDS             complement(1305..2009)
                     /locus_tag="VE686_02505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009493374.1"
                     /note="Members of this family of hydrolases with an active
                     site Cys residue belong to MEROPS family C26; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="gamma-glutamyl-gamma-aminobutyrate hydrolase
                     family protein"
                     /protein_id="HYY83357.1"
                     /translation="MTRPLIGVTTSRRGGWRSFLFAKLALARAGARAIRLMAGQPMPA
                     EGLDGLIIGGGDDIGAEIYGGTVLPDVRIDPERDKLELKLLDEALERGVPVLGICRGS
                     QIINVALGGTLHTDIYEVYVQAPRMRTVLARKTIRMEPGSRLDRIVRCNPCRVNALHH
                     QSVDRVGRGLKVVAHDEAGVIQAIEGGDDRFLMGVQWHPELLVFSAPQQRLFQALAEA
                     ARECVAPFRAESRVAA"
     gene            complement(2006..2992)
                     /locus_tag="VE686_02510"
     CDS             complement(2006..2992)
                     /locus_tag="VE686_02510"
                     /inference="COORDINATES: protein motif:HMM:NF023645.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidoligase family protein"
                     /protein_id="HYY83358.1"
                     /translation="MPQSAVLRPRPGDFHRPPWLTQVEGRPRSVGVELEFIGPTAETT
                     ARALAAEFGGTVREVDPHSFAVEGSRLGNLGVELDTRYAHPDKTDPALLGGFGPTLAS
                     WIGAAASYFLPCEIVTAPIPVERLHEIDAMVDVLRELGAKGTQDGALYAFGLHFNIEA
                     PNFEAQTIASVLKAFVLLNGWLRRQVAPDATRSFLGFADPFPEPFVRRLSEADYRPSV
                     AELIDDYLAANPTRNRDLDLLPLLLFLDEARVRAVLPNEKINGRPAFHYRLPDSRVSD
                     PGWSIAPEWNRWVAVERLAADPERLEMVGRAYLEFPGEAKSWADVVERIALT"
     gene            complement(3059..3430)
                     /locus_tag="VE686_02515"
     CDS             complement(3059..3430)
                     /locus_tag="VE686_02515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012561934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HYY83359.1"
                     /translation="MARILLVDDEEPIRAFLKRGLEVDGHEVTVAVDGADGLDRLSEA
                     GGAFDLLLSDIRMPMMDGIALAMAAKSAHPALRILLMTGFADQRERATGLETVVIDVL
                     TKPFSLAEMRSKVGQALAPKA"
     gene            complement(3437..3958)
                     /gene="hpt"
                     /locus_tag="VE686_02520"
     CDS             complement(3437..3958)
                     /gene="hpt"
                     /locus_tag="VE686_02520"
                     /EC_number="2.4.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018045477.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006166 - purine ribonucleoside salvage
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hypoxanthine phosphoribosyltransferase"
                     /protein_id="HYY83360.1"
                     /translation="MAARNEDIARAVAGANPENLLVVAVLKGSFMFAADLIRALHRAG
                     LAPQVEFIHLSSYRTGTTSSGQVAILRDVESDVRGRDLLLIDDVLESGRTLAFAKDLL
                     MARGAARVLTAVLLEKPGKRAVNVKADFVGFTCPDVFVVGYGMDVAHSYRQLPFVGVV
                     SYTDTEPDLFGGT"
BASE COUNT          628 a         1390 c         1397 g          553 t
ORIGIN      
        1 cgaccgccag cgagcggggg gtccggagcg gcagcacctc gccgcggttt tgcaagagca
       61 cgaaagattc ccgcgccgcc gcgcgcgcga gggcccgcgt ctccggcgtg agcacgctgc
      121 gcaaggcgtg ctcgggatcg ggatcggggc tgtcgaacaa tcccgcgcgg aattttacgc
      181 gcaacacccg ccgaaccgcc gcgtcgaccg cgctcagggg gacgcggccg gcgcggacct
      241 cgtcggcgag atgggcgtca tagaagccgc tcatcatgtc catgtcgacg ccagcgagca
      301 gcgccttgcg cgccgcctcg gccgggttcc ccgcgacccc gtggccgatg agctcctgca
      361 accccgccca gtccgacacc acgaagccgt cgaagcccca ctcgccccgc agcacgtccg
      421 tcaggagcca ccggttcacc cccgccggca ccccgttgag cgcagtcagc gccgccatga
      481 tggtatcgct gccggcccgg agcgccgctc ggaacggcgg caggaaagcg tcgcgcagct
      541 ccccgggggg gatctgggcc gcatcgtagt cgcgcccgcc ctcaggggcg ccgtagccgg
      601 cgaaatgctt cggcgaggtg gcgagcccgc ccgccttgaa gccttcgacc tgcgcggccg
      661 ccatggcgct gcccaggaag gggtcctccc cggcgccctc gacgatgcgg ccccagcggg
      721 ggtcgcgcga gatgtcgacc atgggcgcaa aggtccattg cacgcccatt gccgccgtct
      781 cgcgcgcctg cgcggtcgcg gcacgccgca cgaggtcggg gtcgaacgtc gcggcggccg
      841 cgagggggac cgggaaggtc gtcctgaagc catgcagaat gtcgaggctg acgaggagcg
      901 ggatcttgag gcgcgactgc cgcgccagcc gctgcacggc cgcgacatcc ggcgcgtcgt
      961 tgaagttgat gaccgcgccg acgcgcccgc tcgtcaccat ctcggggcgg tactccgggc
     1021 cggcggagac caggttcagc tgcccgacct tctcctcgag cgtcatcctg gcgaggagat
     1081 cctcgacctg ccgctcgacg tcggcaggcg ctggagcggc cgcgaccagg aatgcggcag
     1141 caaccgacgc aaccacgagc gctcgcgccg cgccggcaaa accgtgtcct gttcgcaaaa
     1201 tctcagctcc cgtccggtcg ggtctggttg ggcctatagc cacggcgggc cgccgtacaa
     1261 ggaagaaagc gcgagcggac ctgaatgggg cgacaacgga tcggtcacgc tgcgacgcgg
     1321 gactccgccc ggaacggcgc gacgcactcg cgcgcggcct cggcaagcgc ctggaacagg
     1381 cgctgctgcg gggccgagaa cacgagcagc tccgggtgcc actgcacgcc catgaggaag
     1441 cggtcgtcgc cgccttcgat ggcctggatc accccggcct cgtcgtgcgc gaccaccttc
     1501 aggccgcgcc cgacccggtc cacggactgg tgatgcagcg cgttcacgcg gcaggggttg
     1561 cagcgcacga tgcggtcgag cctgcttccg ggctccatgc ggatggtctt gcgggcgagc
     1621 acggtgcgca ttcggggcgc ctgcacgtag acctcgtaga tgtcggtgtg gagggtgccg
     1681 ccgagagcga cgttgatgat ctgcgacccg cggcagatgc cgagcaccgg cacgccgcgc
     1741 tcgagcgcct cgtcaaggag cttgagttcg agcttgtccc gctcggggtc gatgcggacg
     1801 tccggcagga cggtcccgcc gtagatctcc gcgccgatgt cgtcgccgcc tccgatgatg
     1861 aggccgtcga gcccctcggc cggcatgggc tggcccgcca tgaggcggat cgcccgggcc
     1921 ccggcgcgcg cgagcgccag cttggcgaac agaaagctgc gccagccacc acgccgggag
     1981 gtcgtgacgc caatgagggg ccgcgtcatg taagagcgat cctctcgacg acgtcggccc
     2041 agctcttcgc ttcccccggg aactcgaggt aggcgcgccc gaccatctcg aggcgctccg
     2101 ggtcggccgc gagccgctcg accgcgaccc agcggttcca ctcgggcgcg atgctccagc
     2161 cgggatcgct gacgcgcgag tcgggcagcc gatagtggaa ggccgggcgc ccgttgatct
     2221 tctcgttcgg aagcacggcg cggacgcgag cctcgtccag gaacaggagc aggggcagca
     2281 ggtccaggtc gcggttccgc gtcgggttcg cggcgagata gtcgtcgatc agctcggcca
     2341 cggacgggcg gtaatcggcc tcggagaggc ggcgcacgaa aggttcggga aacggatccg
     2401 cgaagccgag gaagctgcgg gtggcgtcgg gtgcgacttg ccgccggagc catccgttca
     2461 ggagaacgaa cgccttcagc accgacgcga tcgtctgtgc ctcgaagttc ggcgcctcga
     2521 tgttgaagtg gagcccgaag gcgtacaacg ccccgtcctg ggtccccttg gccccgagct
     2581 cgcgcagcac gtcgaccatg gcgtcgattt cgtgcagccg ctcgacgggg atcggcgccg
     2641 tcacgatctc gcacgggagg aagtagctcg ccgccgcccc gatccatgaa gcgagcgtcg
     2701 gcccgaagcc gccgagcagc gccgggtccg tcttgtccgg atgagcgtaa cgggtatcga
     2761 gctccacccc gaggttcccg aggcgtgaac cctcgaccgc gaacgaatgc gggtcgacct
     2821 cgcgcaccgt gccgccgaac tcggctgcga gcgcgcgcgc ggtcgtttcg gcggtcggcc
     2881 cgatgaactc gagctcgacc ccgacagagc gcgggcggcc ctcgacctgg gtcagccagg
     2941 gaggacgatg aaagtcgcct ggcctcggac gcagcaccgc cgattgcggc attccccctc
     3001 cttcgagcat cgggtggaac gagcacacct tggcgggtgt tcccgacgcg cggcgacgct
     3061 atgctttcgg cgccagcgcc tggcccacct tggagcgcat ctcggcaagc gagaacggct
     3121 tcgtgaggac gtcgatcacg acggtctcga ggccggttgc ccgctcccgc tggtcggcaa
     3181 agccggtcat caagaggatg cggagcgctg gatgcgcgct cttcgccgcc atcgcgagcg
     3241 cgatgccgtc catcatgggc atacggatgt cgctgaggag gaggtcgaat gcgccgcccg
     3301 cctccgagag gcggtcgagc ccgtccgcgc cgtccaccgc gaccgtgacc tcgtgcccat
     3361 cgacctcgag gccacgcttc aaaaacgccc ggatcggctc ctcgtcgtca acgagaagga
     3421 ttctcgccat gtacggtcaa gttccgccga acaggtccgg ttccgtgtcg gtgtacgaca
     3481 cgaccccgac gaagggcagc tgccggtacg aatgggcgac atccatgccg tatcccacga
     3541 cgaagacgtc cgggcaggtg aagccgacga aatcggcctt cacgttcacg gcgcgcttgc
     3601 ccggcttctc gaggaggacc gccgtgagaa cccgggccgc accgcgcgcc atcagcaggt
     3661 ccttggcgaa agccagggtc cgccccgact cgagcacgtc gtcgataagg agcaggtcgc
     3721 ggccgcgcac gtcgctctcg acgtcacgca ggatcgcgac ctggcccgac gaggtggtgc
     3781 cggtgcggta gctcgagaga tggatgaact cgacctgcgg cgcgaggccc gcccggtgga
     3841 gcgcccggat caggtcggcc gcgaacatga agctgccctt gagaaccgcg acgacgagga
     3901 ggttctcggg gttcgcaccc gcgaccgccc gggcgatgtc ctcgttgcgc gccgcgatgg
     3961 tctcttcg
//
LOCUS       DASQWN010000136         2761 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1113202, whole genome shotgun sequence.
ACCESSION   DASQWN010000136 DASQWN010000000
VERSION     DASQWN010000136.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2761)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2761)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2761
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1113202"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            252..698
                     /locus_tag="VE686_02525"
     CDS             252..698
                     /locus_tag="VE686_02525"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY83361.1"
                     /translation="MKLSKVMALGAAGVLLFGTSLFSRHRDNPSWAWASSGAAAANLS
                     EAAQAPAPQGLVWNDPPPAVQDVRAPAAPPPAPQASAPVPEAPKAAAVPARRGSAVAR
                     SKDVPRACAGKPCRPSPNRSRTMAAEAEPAPVLVEPIQFQLADGRL"
     gene            complement(717..1523)
                     /locus_tag="VE686_02530"
     CDS             complement(717..1523)
                     /locus_tag="VE686_02530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011425431.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transglutaminase family protein"
                     /protein_id="HYY83362.1"
                     /translation="MRIKAGFEIAYECPQPTPMLLALNVHPSVADGLEAPDGLIFDPP
                     LPSTAYVDGFGNRCTRIVAPAGLVTISTEFTFRDSGEPDLVASEAKQLNIEDLPDETI
                     VFLLGSRYCDTDRLSETAWSLFGSTRPGWNRVQAICDYVHDHIAFGYEHADATRSAVE
                     AHRGRLGVCRDFAHLAVTFCRCMNIPARYCTGYLGDIGVPRDPAPMDFSAWFEAFLDG
                     RWYTFDARHNVPRIGRILMARGRDATDVALSTNFGPCTLAGFKVMTDEVP"
     gene            complement(1580..2482)
                     /locus_tag="VE686_02535"
     CDS             complement(1580..2482)
                     /locus_tag="VE686_02535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012653524.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transglutaminase family protein"
                     /protein_id="HYY83363.1"
                     /translation="MTTLSVRHVTTYRYRRPVAFGEHRMLFRPRDSYDQKLLSCDLQI
                     TPTPAELRWIHDPFGNCVAIARFDRKARTLRFESAITLDHAPERAPDLRLEDYASAYP
                     FSYDPEEMPDLAPSIARRYADPDEQVDLWARKFLRHGGPTPTGELLKTLTYAIKESFV
                     YVRRPESGTWTPATTLSVGRGSCRDLALLMMEAVRSLGFAARFVTGYIYVPDRDGPTR
                     LGGGSTHAWCQVYLPGAGWVEFDPTNGIVGNADLIRVAVARDPGQAIPLSGTWYGEPG
                     DDLGMTVEVQVTSDRDTRQVTDAA"
BASE COUNT          426 a          928 c          989 g          418 t
ORIGIN      
        1 cgccggtgcg cagtggcgct tcgcgtgatc cgggcgtcga agactggtcc atctcgcggc
       61 tccgcagtcg caacacgcca aggtatacac gccggcatcg cgcccgttcc agcggacctc
      121 ggccttgacg ttcagcttgc ggccgagcgg ctgcgcccgt ctctctggcg cgacgaaaca
      181 cgaatccgcg cgcgacgaaa catcgccgtc acgaccgcgg cccagaagtc tcccgcacac
      241 ggaggctgac gatgaagctc tcgaaggtca tggcccttgg cgcagcgggc gtcctgctgt
      301 ttggaacgtc cctgttcagc cgacaccgcg acaatccgag ctgggcatgg gcgtcgagcg
      361 gcgccgccgc cgcgaacctg tccgaagcgg cccaggcccc ggcgccgcaa ggcttggtct
      421 ggaatgaccc gccccctgcc gttcaggatg tgcgcgcacc ggccgccccg ccgcccgccc
      481 cgcaagcatc tgccccggtc cccgaggcgc ccaaggccgc ggcagttccg gcgcggcgcg
      541 gcagcgccgt ggcgcgcagc aaggacgttc cccgcgcttg cgccggcaag ccttgccgcc
      601 cttcgcctaa tagatcccgt accatggcgg ccgaggcgga gccggcgccg gtgctggtcg
      661 agccgattca gtttcaactg gccgacgggc gtctttgaac catccgcgcc gcgccttcac
      721 ggcacctcgt cggtcattac cttgaagccc gcgagcgtgc acgggccgaa gttcgtcgag
      781 agggcgacgt ccgtcgcgtc gcggccgcgg gccatgagga tgcggccgat gcggggcacg
      841 ttgtggcgtg cgtcgaaggt gtaccagcgg ccgtcgagaa aggcctcgaa ccaggcgctg
      901 aaatccatgg gcgccgggtc gcgcgggacg ccaatgtcgc cgagatagcc cgtgcagtag
      961 cgcgccggga tgttcatgca gcggcagaac gtgaccgcga gatgggcgaa gtcgcggcat
     1021 acgccgagcc gcccccggtg cgcctcgacg gcgctgcgcg tggcgtcggc gtgctcgtag
     1081 ccgaacgcga tgtggtcgtg gacgtaatcg cagatcgcct ggacccggtt ccagcccggg
     1141 cgcgtgcttc cgaacagcga ccaggccgtc tcggagagcc gatccgtgtc gcagtaccgg
     1201 ctgccgagga ggaaaacgat ggtttcgtcg ggaaggtcct cgatgttcaa ttgcttggcc
     1261 tcggacgcca cgaggtccgg ctcgcccgag tcgcggaacg taaactcggt cgagatggtc
     1321 acgaggcccg caggcgcgac gatgcgcgtg caccggttcc cgaacccgtc gacgtaggcg
     1381 gtcgagggca gggggggatc gaagatcagc ccgtccggcg cctcgagacc atccgctacg
     1441 gaagggtgga cgttgagcgc gagcagcatc ggtgtcggct gcggacactc gtaggcgatc
     1501 tcgaagccgg ccttgatcct catcggcaaa agtccctcga cgcgtcgccc ttgagaagca
     1561 ggatcggtgc cgccgaccgt caggctgcgt ccgtcacctg ccgtgtgtcg cgatcggatg
     1621 tgacctgaac ctccacggtc atcccgaggt cgtcgcccgg ctcaccgtac cacgttcccg
     1681 aaagggggat cgcctggccg ggatcgcggg cgacggccac ccggatgagg tcggcgttgc
     1741 cgacgatgcc gttcgtcggg tcgaactcga cccaacccgc tcccggcagg tagacttggc
     1801 accaggcgtg ggtcgatccg ccgccgaggc gcgtgggtcc gtcgcgatcg gggacgtaga
     1861 tgtaccccgt gacaaaccgc gccgcgaacc ccagcgagcg caccgcctcc atcatcagga
     1921 gcgcgagatc gcggcagctg ccccggccga cggacagggt ggtcgccggc gtccaggtgc
     1981 cgctttccgg gcggcgcacg tagacgaagc tttccttgat cgcataggtc agcgtcttga
     2041 ggagttcgcc cgtcggcgtc ggtccaccgt ggcgcaggaa tttccgcgcc cagagatcga
     2101 cctgttcgtc gggatccgca tagcgccggg cgatggaggg ggcgaggtcc ggcatctcct
     2161 ccgggtcgta cgagaacgga taggcgctgg cgtagtcctc caggcggagg tccggcgccc
     2221 gctccggcgc atggtcgagg gtgatcgcgc tctcgaagcg cagcgtgcgg gccttgcggt
     2281 cgaagcgggc gatggcgacg cagttcccga acggatcgtg gatccagcgc agctccgccg
     2341 gtgtcggcgt gatctggagg tcgcacgaca ggagcttctg gtcgtagctg tcccgtgggc
     2401 ggaacagcat gcgatgctcc ccgaacgcca ccggacgccg gtagcgatag gtggtgacgt
     2461 gacggacgga gagggtggtc acgagtggag ttggccttgg cacgcgtccc ttctagcacg
     2521 caagagcggt gccgtgggcg cgcgagccca gatatccccc tcgactatca cgcttcgagc
     2581 gcggcgcggt ggcgctcgtg cgccgcggag cctgcccgtt ccaggcgaag gtcgagaacg
     2641 ccgcggcggc gggggccgcg ggtgtcgtga tcatgaacga gggcacctcg ggccggacgg
     2701 acgccttccg gggcacgctg atgacggcgg cgctggtgca tgcgctcggc gccctggacc
     2761 a
//
LOCUS       DASQWN010000137         2500 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_308615, whole genome shotgun sequence.
ACCESSION   DASQWN010000137 DASQWN010000000
VERSION     DASQWN010000137.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2500)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2500)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2500
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_308615"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..804)
                     /locus_tag="VE686_02540"
     CDS             complement(<1..804)
                     /locus_tag="VE686_02540"
                     /inference="COORDINATES: protein motif:HMM:NF013577.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MurR/RpiR family transcriptional regulator"
                     /protein_id="HYY83364.1"
                     /translation="MTSPDGGARQRHELPFVQTIEARHATMTRSERIIAAYLRAHARE
                     LPFETAASIARKVGVSPMTVGRFLRGLGYDGLSAVKAELSSTLQQVPWLVGERYDRAA
                     RVATSPRGALAERDLARSLDLELKAVVSAYELARSRRFASLARRMARADAVYVAGFQT
                     VRGIAMDCAQRLEYARPNVRFIDGGNGTYAELFAEGDAAKKLLVIVEMRRYARQAVLL
                     AREAANRGIHLAAVTDAVCPWAADYADDLFQISTDVGLFWDSNGPLTTFL"
     gene            complement(801..1949)
                     /locus_tag="VE686_02545"
     CDS             complement(801..1949)
                     /locus_tag="VE686_02545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011982556.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="P1 family peptidase"
                     /protein_id="HYY83365.1"
                     /translation="MDDSAAPGSLQEGGATKVAAPKPRARDLGLPFRGRCGPCNAITD
                     VPGVEVGYATLVNGEAVRTGVTMVLPRGLAGRATSPVWAGFHALNGNGEMTGTHWIRE
                     AGYFLGPIAITNTHGVGMVHHALTRWMVERSQREPGPYAWFMPVVAETCDAYLNDMNG
                     FHVQEEHVREAIEGARGGAVAEGNVGGGTGMICYEFKGGTGTASRVLSVGGGSYTVGA
                     LVQANFGLRPWLRVLGVPVGEHLTENRIWSAEQGSVIALVATDAPLLPNQLERLARRA
                     ALGLGRTGTPGGDGSGDLCLAFSTANATPGEAGGSSVEAARFIPHHLLDGMFEATAQA
                     VEEAVINALVAADTMRGRDGRQVDAIDHGALREVMQAHARPAPRDSRP"
     gene            2078..>2500
                     /locus_tag="VE686_02550"
     CDS             2078..>2500
                     /locus_tag="VE686_02550"
                     /inference="COORDINATES: protein motif:HMM:NF012706.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HYY83366.1"
                     /translation="MPKMTARMRCFAAAVALAGFAWTACPAPADAQTTISWGKPSEVL
                     STDPHLSGDGTSWTVFYLIYDQLMGMTDDLKPAPGLAESWQQVSPTTYTFKLRQNAKF
                     SNGRPLTSADVVGSLKRLLDPKLGASWGRQLRAIKEVVA"
BASE COUNT          384 a          870 c          867 g          379 t
ORIGIN      
        1 caagaaggtg gtgagcgggc cgttggagtc ccagaacagc ccgacgtccg ttgagatctg
       61 gaacaggtcg tcggcgtagt ccgccgccca ggggcacacg gcgtcggtga cggccgcgag
      121 gtggatgccc ctgttcgcag cctcgcgcgc gaggagcacc gcctggcgcg catagcggcg
      181 catctcgacg atcaccagga gcttcttggc tgcgtcgccc tcggcgaaga gctcagcgta
      241 ggttccgttg ccaccgtcga tgaagcgaac gttcgggcgc gcgtactcga ggcgttgtgc
      301 gcaatccatc gcgatgccgc gcaccgtctg gaagcccgcg acgtaaaccg cgtcggcacg
      361 cgccatgcgc cgcgcgaggc tcgcgaagcg ccgggagcgg gcgagctcgt aggccgacac
      421 gacggccttc agctcgaggt ccaggctgcg cgccagatcg cgctccgcga gggcgccccg
      481 cggggaggtc gcgaccctcg cggcgcggtc gtagcgctcg ccgacgagcc atggaacctg
      541 ctgcagcgtc gagctcagct cggccttcac ggccgaaagg ccatcatacc cgagcccgcg
      601 caggaaccgg ccgaccgtca tcgggctcac gcctaccttg cgagcgatcg aggccgccgt
      661 ctcgaatggc aactcgcggg catgggcacg caggtaggcg gcgatgatcc gttcggagcg
      721 cgtcatggtt gcatggcgcg cctcgattgt ttgaacgaac ggcagctcat ggcgctggcg
      781 cgcgccgccg tccggggagg tcacgggcgc gaatcccgcg gcgctggtcg tgcgtgggcc
      841 tgcatcactt cgcggagcgc gccgtgatcg atcgcgtcga cttgccggcc gtcgcggccg
      901 cgcatggtgt cggccgcgac cagcgcgttg atcacggcct cctcaactgc ctgggcagtc
      961 gcctcgaaca tcccatcgag cagatggtgc gggatgaagc gggcagcctc gacgctggag
     1021 ccgcccgcct cgccgggcgt ggcgttcgcc gttgagaacg cgagacagag atcgcccgaa
     1081 ccgtcgcccc ccggcgtgcc ggtgcggccg aggccaaggg ctgcgcgccg cgctaggcgc
     1141 tcgagctggt tgggcagcag cggcgcgtcg gtcgccacga gcgcaatgac cgagccctgc
     1201 tcagccgacc agatgcggtt ctccgtgagg tgctcgccga ccggcacccc gaggactcgc
     1261 agccagggac gcagcccgaa gttcgcctgc acgagagcgc cgaccgtata cgagcctccg
     1321 ccgaccgaca gcacccggga agcggtgccg gtgccgccct tgaactcgta gcagatcatg
     1381 ccggtcccgc ccccgacatt gccttctgca acggctccgc cgcgcgcacc ctcgatggcc
     1441 tcgcgcacgt gctcttcctg cacgtggaag ccgttcatgt cgttgaggta ggcgtcgcac
     1501 gtctcggcga ccacgggcat gaaccacgcg tacggccccg gctcgcgttg cgatctctcc
     1561 accatccagc gcgtgagcgc gtggtgcacc atcccgacgc cgtgcgtgtt ggtgatggcg
     1621 attgggccga ggaagtagcc ggcctcgcgg atccaatggg tccccgtcat ctcaccgttg
     1681 ccgttgaggg cgtggaagcc tgcccagacc gggcttgtgg cgcgcccggc gaggccgcgc
     1741 ggcagcacca tggtgacgcc ggtccgaacc gcctcgccgt tgacgagcgt cgcgtagccg
     1801 acctccacgc ccggcacgtc ggtgatggcg ttgcagggac cgcatcggcc ccggaacgga
     1861 aggccgagat cacgcgcccg cggtttcggg gcggcgacct tggtcgcgcc gccttcctgg
     1921 aggctccccg gagctgcgct atcgtccact gcccatgttt ccttggcgtc cgccgcgatg
     1981 cgcagcgttc gagcgataac atcgattgac acgatgttat gaccctatca tgctcgctgt
     2041 aaatggcccg cggtggcggt ggaaaagggg atcggggatg ccgaagatga ccgcacgcat
     2101 gcgctgcttc gcggcggctg tcgccctcgc aggcttcgcc tggacggcgt gcccggctcc
     2161 ggcagacgca cagacgacga tcagctgggg caagccgtcg gaggtcctct cgaccgaccc
     2221 gcatctctcg ggcgacggga cgtcctggac agtattctac ctcatctacg accagctgat
     2281 ggggatgacc gacgacctga agcccgcgcc cggtctggcc gagtcgtggc agcaggtctc
     2341 gccgacgacc tacaccttca agctccgcca aaacgccaag ttctcgaacg ggcggccgct
     2401 cacgtcggcc gacgtggtcg gcagcctgaa gcgcctgctc gacccgaagc tcggcgcgtc
     2461 atggggaagg cagctgcgcg ccatcaagga ggtcgtggcg
//
LOCUS       DASQWN010000138         4737 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_110312, whole genome shotgun sequence.
ACCESSION   DASQWN010000138 DASQWN010000000
VERSION     DASQWN010000138.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 4737)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4737)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4737
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_110312"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..309
                     /locus_tag="VE686_02555"
     CDS             <1..309
                     /locus_tag="VE686_02555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012334802.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="prolyl oligopeptidase family serine peptidase"
                     /protein_id="HYY83367.1"
                     /translation="LVEYFGPMPQGIVATGVALPPTLILHGAADPVVPVANAHAIENL
                     LRSQGTAHEVKIYPSQGHGFHGAAQDDADRRVAAFLQRYLGAPERRHEARAAPGQAFN
                     "
     gene            348..2426
                     /locus_tag="VE686_02560"
     CDS             348..2426
                     /locus_tag="VE686_02560"
                     /EC_number="3.4.24.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006932932.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M3 family metallopeptidase"
                     /protein_id="HYY83368.1"
                     /translation="MSQPAQASPNPLFETWTTPFEAPPFDRLAPEHFRPAFDRAVAEQ
                     KAEIAAIAGSADEAAFDNTLGALERSGRLLRRVGAVFFNLAGAHTNDALQAIERELAP
                     LLSKHRSDIFMNEALYRRVSSLYARREELGLSPEQARVLERYHTIFVRAGAQLGPEEK
                     QRLAAILERLATLGTQFSQNVLADEKAYALVLDGEADLAGLPGFVREAAARAAAERDL
                     AGKHVVTLSRSSIEPFLTFSTRRDLREQAFRAWSARGEGGGATDNRAIIAETVRLRAE
                     RARLLGYDTFSHYRLSDAMAKTPEAVSELLHRVWEPARAKATADREALEALAQAEGDN
                     AAIEPWDWRHYAEKLRRAKHDIDEAAIKPYFQLDRMIAAAFETARRLFGLAFEEVTDL
                     PLYHPEVRAWSVTGPDGAHIGLFLGDYFARPSKRSGAWMSAFRSQERLSGDIRPIIVN
                     VANFSQAAAGEPALLSFDDARTLFHEFGHALHGLLSDVTYPLLAGTAVPTDFVELPSQ
                     LYEHWLSVPEILRTYAVHYRTGEPMPEELLARVLAARNFDQGHATVEYTSSAFVDLDF
                     HLMRDPGEIEPGPFERATLERIAMPDGITMRHRPPHFTHVFSGEGYASAYYSYLWSEV
                     LDADAFNAFEEAGDPFDPATAERLKRFVYSAGGLREPDEAYVAFRGRLPSVEPLLAKR
                     GLVSAPAADA"
     gene            2435..3076
                     /locus_tag="VE686_02565"
     CDS             2435..3076
                     /locus_tag="VE686_02565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019400854.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysE family translocator"
                     /protein_id="HYY83369.1"
                     /translation="MTFLPDTSVLLAYSLACFVLFITPGPDMSLFLAKTVSGGRRAGM
                     AAMLGAFAGCLVHTVLAALGLSALLAASETAFFVLKVVGGFYLLWLAIDAVRHGSALN
                     IKREARPDDSVWRTFVLGVGVNLTNPKVVLFFVTFLPQFVSPSDPHAGQKLLFLGFYF
                     TAINLPLCALLVLGADRVIALLRTRPRVMRAIDYTFAGIFGAFAVKILAMPGR"
     gene            3189..3401
                     /locus_tag="VE686_02570"
     CDS             3189..3401
                     /locus_tag="VE686_02570"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY83370.1"
                     /translation="MFESVLPHTEALRDGGQTGRGTPISPLSICPSCRTIQTTAVPVR
                     GMCCECGGPMVPLDGADAEEAFTTAA"
     gene            complement(3459..3968)
                     /locus_tag="VE686_02575"
     CDS             complement(3459..3968)
                     /locus_tag="VE686_02575"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY83371.1"
                     /translation="MRLLGRLLFLVPLALLFAIPAAMLTLGVVAVFDPVVALFSGEVV
                     WAGLWSLLDRLSDVDDPAPVLEGAFTGLSRAAATLLVAPPLFVGVVGELASLRSPLWY
                     AGGTGAVTAAIPWVVRASERAPTPEEIHVTVALFVTGAAAGMVYWLIAGQSAGASRPL
                     PHNAAPARS"
     gene            complement(3965..>4737)
                     /gene="rlmN"
                     /locus_tag="VE686_02580"
     CDS             complement(3965..>4737)
                     /gene="rlmN"
                     /locus_tag="VE686_02580"
                     /EC_number="2.1.1.192"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009493698.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000049 - tRNA binding [Evidence IEA];
                     GO_function: GO:0002935 - tRNA
                     (adenine(37)-C2)-methyltransferase activity [Evidence
                     IEA];
                     GO_function: GO:0008173 - RNA methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:0070040 - rRNA
                     (adenine(2503)-C2-)-methyltransferase activity [Evidence
                     IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA];
                     GO_process: GO:0030488 - tRNA methylation [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="23S rRNA (adenine(2503)-C(2))-methyltransferase
                     RlmN"
                     /protein_id="HYY83372.1"
                     /translation="TPEEIVGQVLLARDSIGDWPGATPPADGGLLPDAERKITNVVLM
                     GMGEPLYNFENVRDALLVAADGEGLSLSKRRITLSTSGVVPGIPRAGGEIGCMLAISL
                     HAVRDDLRDKLVPLNRKHPIKDLLQACRTYPGVSNARRITFEYVMLKGVNDSDRDARE
                     LVRLLKGIPAKINLIPFNPWPGTKYECSDWDRIERFSEIVFRAGYASPVRTPRGRDIL
                     AACGQLKSETERLRARARLMLESGIGAEGVYALSDGEA"
BASE COUNT          708 a         1748 c         1574 g          707 t
ORIGIN      
        1 ctggtcgagt acttcggtcc catgccgcag ggcatcgtcg ccacaggcgt tgccctgccg
       61 ccgaccctca tcctgcacgg ggcggccgat ccggtcgtgc cggtcgcgaa cgcgcacgcg
      121 atcgagaacc tcttgcgcag ccagggcacg gcccacgagg tcaagatcta tccaagccag
      181 gggcacggct tccacggcgc cgcgcaggac gacgccgacc gccgggttgc cgccttcctg
      241 cagcggtatc tcggcgcgcc ggagcgccga cacgaagcca gggccgcgcc cggccaggcg
      301 ttcaactaat accgcccaag gcgggcccaa gcacacaagg acgtcagatg tcgcagcccg
      361 cgcaggcgag cccgaacccg ctgttcgaga cctggacgac gccgttcgag gcgccgccgt
      421 tcgaccggct tgcgcccgag cacttccggc ccgccttcga ccgcgcggtg gcggagcaga
      481 aggccgagat cgccgccatc gccggcagtg cggacgaggc ggccttcgac aacaccctcg
      541 gtgcgctcga gcgcagcggc cgcctgctgc gccgggtcgg agcggtgttc ttcaatctcg
      601 cgggcgctca caccaacgac gccctgcaag cgatcgagcg cgagctcgcg ccgcttttgt
      661 cgaagcaccg cagcgacatc ttcatgaacg aggcgctgta ccgccgcgtt tcctccctct
      721 acgcccgtcg ggaggagctt ggtctcagcc ctgagcaggc ccgcgtgctc gagcgctacc
      781 acaccatctt cgtgcgcgcc ggcgcgcagc tcggccctga ggagaagcag cggctcgccg
      841 ccatcctcga gcgccttgcg accctcggga cgcagttctc gcagaacgtt ctcgccgacg
      901 agaaggccta cgccctggtg ctcgacggcg aggccgatct cgccgggctg cccgggttcg
      961 ttcgcgaagc ggcggcgcgc gccgcagcgg agcgcgatct tgcgggcaag catgtcgtca
     1021 ccctgtcgcg ctcgtccatc gagccgttcc tgaccttctc gacccgccgc gacctgcgcg
     1081 agcaggcctt ccgggcctgg tcggcgcggg gcgaaggcgg gggcgccacg gacaatcgcg
     1141 ccatcatcgc cgagacggtg cgcctgcgcg ccgagcgcgc caggcttctc ggctacgaca
     1201 cgttctccca ctatcgcctc tccgacgcca tggcgaagac gcccgaggcc gtctccgagc
     1261 tcctgcaccg ggtatgggag ccggcgcgcg ccaaggcgac ggccgaccgc gaagccctcg
     1321 aggcgctcgc gcaggcggag ggcgacaacg ccgcgatcga gccgtgggac tggcgccact
     1381 acgccgagaa gctgcgccgc gccaagcacg acatcgacga ggcggcgatc aagccgtact
     1441 tccagctcga ccgcatgatc gcggccgcct tcgagaccgc gcggcgcctt ttcggactcg
     1501 cgttcgagga ggtcacggac cttccgctct accatccgga ggtgcgcgcc tggagcgtca
     1561 cgggaccgga cggcgcccac atcggccttt tcctcggcga ctacttcgcc aggccctcga
     1621 agcgcagcgg cgcctggatg agcgcgttcc gctcgcagga gcggctctcg ggcgacatcc
     1681 gcccgatcat cgtcaacgtc gccaacttct cgcaagcggc cgcgggcgag ccggcgctgc
     1741 tgtccttcga cgatgcgcgg accctgttcc acgagttcgg ccacgccctg cacggcctgt
     1801 tgtcggacgt cacctacccg ctgcttgccg gcaccgccgt gccgaccgac ttcgtcgagc
     1861 tcccctcgca gctgtacgag cactggctct cggttcccga gatcctgcgc acctacgcgg
     1921 tgcattaccg caccggcgag cccatgccgg aggagctcct cgcccgggtg ctcgcggcgc
     1981 gcaacttcga ccagggccac gccacggtgg agtacacgag ctcggctttc gtcgacctcg
     2041 acttccacct gatgcgcgac ccgggcgaga tcgagcccgg cccgttcgag cgggcgacgc
     2101 tcgagcgcat cgccatgccg gacggcatca ccatgcgcca ccgcccgccg cacttcacgc
     2161 acgtgttctc gggcgagggc tacgcctcgg cctactacag ctatctctgg tcggaggtgc
     2221 tcgacgcgga cgccttcaac gccttcgagg aagcgggcga cccgttcgat ccggcaacgg
     2281 ccgagcgcct caagcgcttc gtctattccg ccgggggctt gcgcgagccc gacgaggcct
     2341 atgtggcgtt ccgcggacgc ctgcccagcg tcgagcccct gctcgccaag cgaggtctgg
     2401 tcagcgcgcc cgccgcggat gcataaagga acgcatgacg ttcctgccgg acacgagcgt
     2461 tctcctcgcc tactcgctcg cctgcttcgt gctgttcatc acgccggggc cggacatgag
     2521 cctgttcctg gccaagaccg tctcgggcgg gcgccgggcc ggcatggcgg ccatgctcgg
     2581 cgccttcgcg ggctgcctcg tccacacggt gctcgcggcc ctcggactct cggccctgct
     2641 cgccgcgtcg gagacggcgt tcttcgtcct caaggtcgtc ggcggcttct accttctctg
     2701 gctcgccatc gatgcggtgc gccacggctc ggccctcaac atcaagcgtg aggcgaggcc
     2761 cgacgactcc gtgtggagga cgttcgtgct cggggtcggc gtcaacctga ccaatcccaa
     2821 ggtcgtcctc ttcttcgtga ccttcctgcc gcagttcgtg agcccctcgg acccccacgc
     2881 cggccagaag ctcctctttc tcggcttcta tttcacggcc atcaacctgc ccctgtgcgc
     2941 cctcctggtg ctcggggccg accgggtcat cgccctcttg cggacccgcc cccgtgtcat
     3001 gcgcgccatc gactacacct tcgcgggcat cttcggcgcc ttcgcggtca agatcctggc
     3061 catgccgggc cgctgagccc ggatctcccc gttgcgcaac gggacgaaac acgtctcgac
     3121 atcttttcga aacgaggcgg cgctacggga ggcacgttgg tgccgcgagc acctgtgaag
     3181 aggacaccat gttcgagagc gttcttcccc acaccgaggc cctgcgggat ggcgggcaga
     3241 ccggccgcgg cacgccgatc tcccctctgt ccatctgccc gtcctgccgc accatccaga
     3301 cgacggcagt cccggtgcgc ggcatgtgct gcgagtgcgg cggacccatg gtgccgctcg
     3361 acggtgcaga cgccgaggag gcgttcacga cggctgcata aggcagcccc gcgctcgcga
     3421 tacagcgcct ctaggcgccg gacggagcgg aacgtctgct aggagcgggc gggcgctgca
     3481 ttgtgtggga gtggccggct ggcgccggcg ctctggccgg cgatgagcca gtagaccatc
     3541 ccagccgcgg ctccggtgac gaagagcgcc acggtgacat ggatctcctc cggcgtcggc
     3601 gcgcgctcgg aagcacgcac cacccacggg attgcagccg tcacggcccc ggtgccgccg
     3661 gcgtaccaca aggggctgcg caggctggcg agctcgccga cgacccccac gaacagcggc
     3721 ggggcgacga ggagcgtcgc ggcggcccgg ctcaggcccg tgaaggcgcc ctcgagcacc
     3781 ggcgcgggat cgtcaacgtc ggagagccga tcgagcagcg accagagacc cgcccagacc
     3841 acctcgccgg aaaacagcgc gaccacggga tcgaacaccg caacgacgcc gagcgtcagc
     3901 atggcggccg ggatcgcgaa cagcagcgcc aggggaacga ggaacagcag gcgcccgagc
     3961 agcctcatgc ctcgccgtcg ctcagggcgt agacgccctc cgcgccgatg ccggactcga
     4021 gcatcagccg ggcgcgggcg cgtaagcgct cggtctcgct cttgagctgg ccgcaggcgg
     4081 cgaggatgtc gcgcccgcgc ggcgtgcgca ccggggaggc gtagcccgcc cgaaacacga
     4141 tttccgagaa gcgctcgatg cgatcccagt ccgagcactc gtacttggtg ccgggccagg
     4201 gattgaaggg gatcaggttg atcttcgccg ggatgccctt gagcaggcgc accagctcgc
     4261 gcgcgtcgcg gtcggagtcg ttcacgccct tcagcatcac gtactcgaag gtgatgcggc
     4321 gcgcgttcga cacgcccgga tacgtccggc aggcctgcag caggtccttg atcggatgct
     4381 tgcggttgag cggcaccagc ttgtcgcgca ggtcgtcgcg caccgcgtgc agcgagatcg
     4441 ccagcatgca gccgatctcg ccccccgcgc gcgggatgcc cggcacgacg ccggaggtgg
     4501 acaacgtgat gcggcgcttg gacaggctca gcccctcgcc gtcggccgcg accagcagcg
     4561 cgtcgcgcac gttctcgaaa ttgtagagcg gctcgcccat gcccatcagc acgacgttgg
     4621 tgatcttgcg ctcggcatcg ggcagcaggc cgccgtcggc aggtggcgtt gcacccggcc
     4681 agtcgccgat gctgtcgcgc gccagcagga cctggccgac gatctcctcg ggcgtga
//
LOCUS       DASQWN010000139         8212 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1412105, whole genome shotgun sequence.
ACCESSION   DASQWN010000139 DASQWN010000000
VERSION     DASQWN010000139.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 8212)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8212)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8212
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1412105"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..440
                     /locus_tag="VE686_02585"
     CDS             <1..440
                     /locus_tag="VE686_02585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009493340.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008767 - UDP-galactopyranose mutase
                     activity [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="UDP-galactopyranose mutase"
                     /protein_id="HYY83373.1"
                     /translation="FRFGKLPYRSLKFEHVTLDKAWHQPVAVINYPQTNAYTRVTEYK
                     HLTGQEHAKTALTYEYPSAEGDPYYPVPKPENQELFKKYERLALATPNVWFVGRLATY
                     RYYNMDQIVGQALATFRRIDEALPVGADTSSVEVVRSGAALAS"
     gene            461..2638
                     /locus_tag="VE686_02590"
     CDS             461..2638
                     /locus_tag="VE686_02590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009493338.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="family 1 glycosylhydrolase"
                     /protein_id="HYY83374.1"
                     /translation="MASDLPLELWGGCECTVVRIGDAFRDQSIETGHRERLDDIDRIA
                     ALGIRTVRYPVLWESVAPDGPDSADWSWQDERLSRLRSLGVRAIAGLCHHGSGPHYTN
                     LLDEAFPEHLARYAAMTAERYPDLEMYTPVNEPLTTARFSALYGHWYPHAQDYNSFLR
                     ALVNECKATVLAMRAIRKVRPDAKLVQTDDFGKTFSTPQLAYQAEHDNERRWLTFDLL
                     CGRVDRQHPFWGWFTYAGVPEGDLELFLEGDAAPDIIGINHYLTSERFLDQRLRRYPE
                     HLWGGNGRHRFADAEAVRMPLPPEEIGPAARLREVWERYRRPIAVTEAHHGCTRDEQL
                     RWLVEVWDAAKTVKAEGADIRAVTVWSLFGTVDWNSLLTQRTGIYEPGPFDVRGAQPR
                     RTALAHAAEALATTGTHDHPVLDQPGWWKRDARFYRPVKGANACRLVGAPRQLLLTGA
                     TGTLGRALSRLCDIRGLDHALVSRRELDIADADSVRAALACYKPWAVVNTAGFVRVAD
                     AERERDACMRENALGAEVLARACAELGIPFVTFSSDLVFDGRLGRPYVESDAVNPTSV
                     YGESKAHAERRVLAAHEKALVIRTSAFFGPWDRFNFVWRVLNEAAAGNAVETATDMVS
                     PTYVPDLGHAVLDLLIDGDSGIRHLTSPGALSWSEFARAALRRGGYDAALVGEASGEA
                     PLNTALTSERGLLLPPLESALDRFFRDSEVDWALPHPAAVAAE"
     gene            complement(2641..3396)
                     /gene="moeB"
                     /locus_tag="VE686_02595"
     CDS             complement(2641..3396)
                     /gene="moeB"
                     /locus_tag="VE686_02595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019905146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008641 - ubiquitin-like modifier
                     activating enzyme activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin-synthase adenylyltransferase MoeB"
                     /protein_id="HYY83375.1"
                     /translation="MALLSDEIERYARHLVLQDIGGPGQAKLAAARVLVIGAGGLGAP
                     LLQYLAAAGVGTLGIVDDDIVSLSNLQRQVIHGTADVGRAKVASAEAAIRRLNPHVAI
                     DVHPTRITSENGRALVRGYDIVADGSDNFATRYAVADACLAEGRPLVTAALGQFDGSL
                     TTIRGHETGPDGRPNPTYRCLFPSPPPAGAVPTCAEAGVLGALAGVMGSLMAMEVIRE
                     IVGFGEGLVGRLLMVDARAMRFETIGYQRASGA"
     gene            3503..3925
                     /locus_tag="VE686_02600"
     CDS             3503..3925
                     /locus_tag="VE686_02600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009494560.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HYY83376.1"
                     /translation="MQPRITLITLGVADVARARRFYETLGWVASPASQAEVAFFQANG
                     LGLALYGRAALAADAGVDAASGFAGVTIAQNLRSRREVDETYAEALAAGATPTRAPHE
                     THWGGYVAYMADPDGHVWELAFNPGFALDDAGNLHLPA"
     gene            3929..4342
                     /gene="cdd"
                     /locus_tag="VE686_02605"
     CDS             3929..4342
                     /gene="cdd"
                     /locus_tag="VE686_02605"
                     /EC_number="3.5.4.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019403900.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004126 - cytidine deaminase activity
                     [Evidence IEA];
                     GO_process: GO:0008655 - pyrimidine-containing compound
                     salvage [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytidine deaminase"
                     /protein_id="HYY83377.1"
                     /translation="MSLDDLFAAAKQAQARAYAPYSRFKVGAAVRGRGGGVYSGCNVE
                     NAAYPAGTCAEEAAIAAMIAAGESRIAEVLVVGDGAALVTPCGACRQRIREFAAPETA
                     IHVAGPEGVRRSFTLEDLLPFSFGPDTLGRGEGDR"
     gene            4386..5705
                     /gene="deoA"
                     /locus_tag="VE686_02610"
     CDS             4386..5705
                     /gene="deoA"
                     /locus_tag="VE686_02610"
                     /EC_number="2.4.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009494566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009032 - thymidine phosphorylase activity
                     [Evidence IEA];
                     GO_process: GO:0006139 - nucleobase-containing compound
                     metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thymidine phosphorylase"
                     /protein_id="HYY83378.1"
                     /translation="MWLPQEMIRAKRDGARLGAEEIDSFVEGLTSGRVSEGQAAAFAM
                     AVFFRGLSVDERVALTRAMTRSGTRLAWDLPGPVLDKHSTGGVGDAVSLVLAPAVAAC
                     GGFVPMIAGRGLGHTGGTLDKLASIPGYQSQPDVETFRRVVHDVGCAIIGQTADLAPA
                     DRRLYAIRDVTGTVESLDLITTSILAKKLAAGLQGLVMDVTVGSGAFMPNLDAGRALA
                     TSLVEVANGAGLPTHAILTDMDQPLASAAGNAVEVWYAVDFLSGRRRQPRFHEVTVAL
                     GAEMLVLGGLAPDLHEAERSVTRAIASGHAAEIFAGMVSGLGGPADLLEHPARHLACA
                     PITRPVHPERGGYVEAIATRDLGLAVVALGGGRTRPDDTIDPAVGLVDLAGVGERVDS
                     MIPLGIVHARSEAAADEAAQAVLRAFRVAEAPVACGPAILERIGAPA"
     gene            5702..6646
                     /locus_tag="VE686_02615"
     CDS             5702..6646
                     /locus_tag="VE686_02615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009494567.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glyoxylate/hydroxypyruvate reductase A"
                     /protein_id="HYY83379.1"
                     /translation="MTLLVAITGWEPEPWIARFRRLLPDRKVVALGEPFDRRAVRYAA
                     SWKHPPGALAGLPHLDVIFSLGAGVDHLVGDDRLPDVPVVRVVDPDLTERMSEYVVLH
                     CLIYLRQQRRYDAQQRERVWHDDRHQPAARDVRVGIMGLGVLGQDAARKLKVLGFDVA
                     GWSRSPKQLEGLPTFAGEDGLDAFLARTDILVCLVPLTDDTRGILNRSLFAKLARDGR
                     LGGPAIVNAGRGGLQVEADILAALDDGTLKAATLDVFETEPLPVDSPLWHHPGVAVTP
                     HNAAMSEPDAIGRLVVEQIRAYERGEALRNVVDRQLGY"
     gene            6746..7027
                     /locus_tag="VE686_02620"
     CDS             6746..7027
                     /locus_tag="VE686_02620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009764828.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY83380.1"
                     /translation="MRQIHLTDGTRVRFPGRTEEFDQGVEIGILAVLMDFGTPEITRT
                     ISTSNLEQARALADKLGYRLLEGVAADGLTTVILRRAQVRPVLKLVHSA"
     gene            complement(7037..7903)
                     /locus_tag="VE686_02625"
     CDS             complement(7037..7903)
                     /locus_tag="VE686_02625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012252579.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NlpC/P60 family protein"
                     /protein_id="HYY83381.1"
                     /translation="MTLDPRINPVRPDLAAARLRGRVEAARFTDGEQKRVLAPAAPVR
                     RHPARDAALDTEALMGERVTVYDSQGGFAWVQLEADGYVGYLPSDALGEIGVEPDQRV
                     CALRTFVYPGPNLKLPPTGFLSLNAAVAVRAVEGDYAQLATGGFVHLAHLADRSHHEP
                     DFVAVAERFVGTPYLWGGKTSLGLDCSGLVQIALAAAGIAAPRDSDMMARELGAPVET
                     GPDLSGLRRGDLVCWGGHIGIMLDDRQLLHANGHAMATAVEPLRVAEERIRTKSYGPI
                     TGIRRLPRLSAA"
     gene            complement(7973..>8212)
                     /locus_tag="VE686_02630"
     CDS             complement(7973..>8212)
                     /locus_tag="VE686_02630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010683665.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="leucyl aminopeptidase family protein"
                     /protein_id="HYY83382.1"
                     /translation="YASMLESKIADVNHVSSGPMAGSITAALFLRRFASRARAHVHFD
                     IYAWTPKAKPGRPEGGEVQGARVVYALLRERYGGA"
BASE COUNT         1164 a         3003 c         2855 g         1190 t
ORIGIN      
        1 acttccgctt cggcaagctg ccctaccggt cgctgaagtt cgagcatgtc acgctcgaca
       61 aggcgtggca ccagcccgtt gcggtcatca actacccgca gaccaacgcc tacacgcgcg
      121 tcaccgagta caagcacctc acgggccagg agcacgccaa gacggcgctc acctacgagt
      181 acccgtcggc cgaaggcgac ccctactacc cggtgccgaa gcccgagaat caggagctgt
      241 tcaagaagta cgagcgcctc gcgctggcga cgccgaacgt gtggttcgtc ggccggcttg
      301 cgacctaccg ctactacaac atggatcaga tcgtcgggca ggcgctcgcc acgttccgcc
      361 gcatcgacga ggcgctgcct gtcggcgcgg acacgagctc cgtcgaggtg gtgaggtccg
      421 gcgccgcgct cgcctcgtga gcgtctcgca aggcaccggc atggcttccg atctaccgct
      481 ggagctctgg ggcggctgcg agtgcaccgt cgtgcgcatc ggcgacgcgt tccgcgatca
      541 gagcatcgag acggggcatc gcgagcgcct cgacgacatc gaccgcatcg ccgccctcgg
      601 catccggacc gtgcgctacc ccgtgctgtg ggagagcgtg gcgcccgacg ggcccgacag
      661 cgccgactgg agctggcagg acgaacggct gtcccgtctg cggtcgctcg gcgtgcgcgc
      721 catcgcgggc ctgtgccacc acggcagcgg gccgcactac accaacctcc tcgacgaggc
      781 cttcccggag catctcgcgc gctacgccgc catgacggca gagcgctacc ccgacctcga
      841 gatgtacacg cccgtcaacg agccgctgac gacggcacgg ttcagcgcgc tttacgggca
      901 ctggtatccg cacgcacagg actacaacag cttcctgcgg gcgctcgtga acgagtgtaa
      961 ggcgaccgtg ctcgccatgc gcgcgatccg caaggtgcgg ccggacgcca agctcgtgca
     1021 gaccgacgac ttcggcaaga cgttctcgac gccgcaactc gcctatcagg ccgagcacga
     1081 caacgagcgc cgctggctca cgttcgacct cctgtgcggc cgcgtcgacc gccagcaccc
     1141 gttctggggc tggttcacct acgccggcgt gcccgagggc gacctcgagc tgttcctcga
     1201 gggcgacgcc gcccccgaca tcatcggcat caatcactat ctcacgagcg agcgcttcct
     1261 cgaccagcgc ctgcgccgct accccgagca tctctggggc ggcaacggcc ggcatcgttt
     1321 cgccgacgcc gaggcggtgc gcatgccgct cccgccggag gagatcggcc cagccgcgcg
     1381 cctgcgcgag gtgtgggagc gctaccgccg gcccatcgcc gtcacggagg cgcaccacgg
     1441 ctgcacccgc gacgagcagc tgcgctggct cgtggaggtc tgggacgcgg ccaagaccgt
     1501 caaggccgag ggcgccgaca tccgcgccgt gacggtgtgg tccctgttcg gcaccgtcga
     1561 ctggaattcg ctcctgacgc agcgcaccgg catctatgag ccgggaccct tcgacgtgcg
     1621 tggggcgcag ccgcgccgca cggccctcgc ccacgcggcg gaggccctcg ccaccacggg
     1681 gacgcacgac cacccggtcc tcgaccagcc gggctggtgg aagcgcgacg cccgcttcta
     1741 tcgtcccgtg aagggcgcca acgcctgccg cctcgtcggc gcgccgcgcc agcttctcct
     1801 gaccggcgcc accggcacct tggggcgcgc cctgtcgcgg ctgtgcgaca tccgggggct
     1861 cgaccatgcc ctcgtgtccc gtcgcgagct cgacatcgcc gatgccgaca gcgtgcgggc
     1921 cgcgctcgcc tgctacaagc cgtgggccgt ggtgaacacc gccggcttcg tccgcgtcgc
     1981 cgatgccgaa cgcgagcgcg acgcatgcat gcgcgagaac gcgctcggcg ccgaggtgct
     2041 ggcgcgggcc tgtgccgagc tcggcatccc gttcgtcacc ttttcgtccg acctcgtctt
     2101 cgacggccgg ctcgggcggc cctacgtgga aagcgacgcc gtgaacccca cgagcgtgta
     2161 cggggagagc aaggcgcatg ccgagcgccg ggtgctcgcc gcgcacgaga aggcgctcgt
     2221 catccgcacg agcgcgttct tcggcccgtg ggaccgcttc aacttcgtgt ggcgggtcct
     2281 caacgaggcg gcggccggca acgccgtcga gaccgccacc gacatggtgt cgcccaccta
     2341 cgtgccggac ctcggccatg cggtcctcga cctcctcatc gacggcgaca gcggcatccg
     2401 ccatctcacc agccccggtg cgctgtcgtg gtcggagttc gcgcgggcgg ccctgcgccg
     2461 cggcggctac gacgcggccc tggtggggga ggcgtccggc gaggcgcccc tcaacacggc
     2521 gctgacgagc gagcgcggcc tcctgctgcc cccgctcgag agcgcactcg accgcttctt
     2581 ccgcgacagc gaggtcgatt gggcgctgcc ccacccggcc gccgtggcgg ccgagtagcc
     2641 ttacgcgccc gaggcgcgct ggtacccgat cgtctcgaag cgcatggcgc gcgcgtcgac
     2701 catgagcagg cgccccacga ggccctcgcc gaagccgacg atctcgcgga tgacctccat
     2761 ggccatgagg ctgcccatga cgcccgcaag cgcgccgagc acgccggctt cggcgcaggt
     2821 cggcaccgcg ccggcgggag gcggcgaggg aaagaggcag cggtaggtcg ggttcggccg
     2881 cccgtccggc ccggtctcgt ggccgcggat ggtggtcagc gatccgtcga actggccgag
     2941 cgccgccgtg acgagaggtc tgccctccgc caggcaggcg tcagcgacgg cgtagcgggt
     3001 ggcgaagttg tcggacccgt ctgcgacgat gtcgtagccg cgcacgagcg cgcgcccgtt
     3061 ctcggaggtg atgcgggtcg ggtgcacgtc gatggcgacg tggggattga gccggcggat
     3121 cgccgcctcc gcgctcgcca ccttcgcccg tccgacgtcc gcggtgccgt ggatcacctg
     3181 ccgctgcagg ttggacaggg acacgatgtc gtcgtcgacg atgccgaggg tgccgacgcc
     3241 cgcggccgcg aggtactgca gcagcggcgc gccgaggccg ccggccccga tgacgagcac
     3301 cctcgcggcg gcgagcttcg cctgcccggg tccgccgatg tcctgcagca cgagatggcg
     3361 ggcgtagcgt tcgatttcgt cggacaaaag ggccatgcgg cgaccatacc cgctcccggt
     3421 gcaggctaga accctcgcgg ccgcgctggt gcaggctcgg tacgcgtggc atcgttcctg
     3481 aacggagttc aaggagcgcc tcttgcagcc gcggatcacc ctcatcaccc tcggtgtcgc
     3541 ggacgtcgcg cgggcgcggc ggttctacga gacgctcggg tgggtggcgt cgcccgcgag
     3601 ccaggccgag gtcgccttct tccaggcgaa cgggctcggg ctcgcgctct acggccgggc
     3661 ggccctcgcg gcagacgccg gcgtcgacgc ggcgtcaggg ttcgcgggcg tcaccatcgc
     3721 gcagaacctg cgctcccggc gggaggtgga cgagacctac gccgaggcgc tcgcggccgg
     3781 cgcgacgccg acgcgagcgc cgcacgagac ccattggggc ggctatgtcg cctacatggc
     3841 ggatccggac ggtcacgtgt gggagctcgc cttcaatccc ggcttcgccc tcgacgatgc
     3901 cggcaacctg caccttccgg cctgaccgat gtccctcgac gacctcttcg cagccgccaa
     3961 gcaggcgcag gcccgcgcgt acgcgcccta ctcgcggttc aaggtcggtg cggccgtgcg
     4021 cggccgaggc ggcggcgtgt attccggctg caacgtcgag aacgccgctt atcccgccgg
     4081 cacctgcgcc gaggaagcgg ccatcgccgc catgatcgcc gccggcgaga gccgcatcgc
     4141 cgaggtcctc gtcgtcggcg acggcgcggc gctggtgacg ccgtgcggcg cgtgccgcca
     4201 gcgcatccgc gagttcgccg cgcccgagac cgcgatccat gtcgccggcc cggagggcgt
     4261 aagacggagc ttcacgctcg aagacctgtt gccgttctcg ttcggacccg acactttggg
     4321 ccggggggag ggcgacagat gattccgagc gaggacgcgg ccgcccggag ggccggctcg
     4381 tgacgatttg gcttccgcag gagatgatcc gcgccaaacg cgacggcgca aggctcggcg
     4441 cggaggagat cgactccttc gtcgaaggcc tgacctccgg ccgcgtgagc gagggccagg
     4501 ccgcggcttt cgccatggcg gtgttcttcc gcgggctctc ggtggatgag cgcgtcgcgc
     4561 tcacgcgcgc catgacccgc tccgggaccc ggctcgcctg ggatctgccc gggccggtcc
     4621 tcgacaagca ttcgacgggc ggcgtcggcg acgccgtcag cctcgttctc gccccggcgg
     4681 tcgcggcctg cggcggcttc gtcccgatga tcgcgggccg cggtctcggc cataccggcg
     4741 gcaccctcga caagctcgcg tctattccgg ggtaccagtc gcagcccgat gtggagacgt
     4801 tccgccgcgt cgtgcacgac gtcggatgcg ccatcatcgg gcagaccgca gatctcgccc
     4861 cggccgacag gcgcctctac gccattcgcg acgtgacagg cacggtcgag tccctcgacc
     4921 tcatcaccac ctcgatcctg gcgaagaagc tcgctgccgg cctgcagggc ctcgtaatgg
     4981 acgtcaccgt cggctcgggc gcgttcatgc cgaacctcga cgccgggcgc gcgctcgcca
     5041 ccagcctcgt cgaggtcgca aacggcgccg gacttccgac gcacgccatc ctcaccgaca
     5101 tggaccagcc cctcgcgtcc gcggccggca atgccgtcga ggtctggtac gcggtcgact
     5161 tcctcagcgg acggcggcgg cagccgcgct tccacgaggt cacggtggcg ctcggcgccg
     5221 agatgctggt gctcggcggc ctcgcgcccg acctccacga ggccgagcgt agcgtgacgc
     5281 gggcgatcgc atcgggccat gcggccgaga tcttcgccgg catggtctcg ggcctcggcg
     5341 gccccgccga cctgttggag cacccggcgc gccacctcgc ctgtgcgccg atcacccgcc
     5401 cggtgcaccc cgagcgcggc ggctacgtcg aggcgatcgc gacgcgtgat ctcggcctcg
     5461 ctgtcgtagc gctcggtggc gggcgcacgc gccccgacga caccatcgat ccggccgtcg
     5521 gcctcgtcga ccttgccggc gtcggcgagc gcgtcgactc catgatcccc ctcggcatcg
     5581 tccacgcacg gtcggaggcc gccgccgacg aggccgcgca ggccgtcctg cgcgccttcc
     5641 gcgtcgccga ggcgcccgtc gcctgcggcc ccgccatcct cgaacgtatc ggagcgcccg
     5701 cttgaccctc ctcgtcgcca tcacggggtg ggagcccgag ccctggatcg cccgtttccg
     5761 ccgcctcctg cccgaccgca aggtggttgc cctcggggag ccgttcgacc ggcgcgcggt
     5821 ccgctatgcg gcctcctgga agcatccgcc cggcgcgctt gccggactgc cgcacctcga
     5881 cgtcatcttc tccctcggag cgggcgtcga ccacctcgtc ggcgatgacc gtcttccgga
     5941 cgtccccgtc gtccgcgtcg tcgaccccga cctgacggag cgcatgagcg agtacgtcgt
     6001 cctgcactgc ctcatctacc tgcgccagca gcgccgctac gacgcgcagc agcgcgagcg
     6061 ggtctggcat gacgaccgcc accagcccgc cgcgcgtgac gttcgggtcg gcatcatggg
     6121 gttgggtgtg ctgggccagg acgccgcgcg caagctcaag gtgctcggct tcgatgtcgc
     6181 tggctggagc cgttcgccga agcaactcga aggcttgccg acctttgcgg gcgaggacgg
     6241 cctcgacgcg ttcctcgcgc gcaccgacat cctcgtctgc ctcgttcccc tgacggacga
     6301 caccaggggc atcctcaatc gctcgctctt cgccaagctt gcaagggacg ggcggctggg
     6361 cggaccggcg atcgtcaacg ccggccgcgg cgggctgcag gtcgaggccg acattctcgc
     6421 cgccctcgac gacggcaccc tcaaggcggc caccctcgac gtgttcgaga ccgagccgct
     6481 gcccgtcgac tcgcccctct ggcaccatcc tggggtggcc gtgacgcccc ataacgccgc
     6541 catgagcgag cccgatgcca tcggccgcct cgtcgtcgag caaatccgcg cctacgagcg
     6601 cggggaggcg ttgcgcaatg tggtggatcg gcaactcggg tattgaaacg cgccgttgtc
     6661 cccagggagc gacactttta gccttcgtta accctgtcgg gggctctatc acggggccaa
     6721 tctagaagac gcgggggcat gccggatgcg gcagatccat ctcacggacg gcacacgggt
     6781 gcggtttccc ggccgcaccg aggagttcga ccagggcgtc gagatcggga tcctcgcggt
     6841 cctgatggac ttcgggacgc ccgagatcac gcgcaccatc tcgaccagca atctcgagca
     6901 ggcgcgggcg ctcgccgaca agctcgggta ccgcttgctc gagggcgttg cggccgacgg
     6961 gctcacgacg gtgatcctgc gccgcgcgca ggtgcgcccg gtgctgaagc tcgtgcattc
     7021 ggcctgagct cagggcctaa gccgcgctca aacgaggcaa gcgcctgatc ccggtgatcg
     7081 ggccgtagct ttttgtcctg atccgctcct cggcgacccg caagggctcg acggctgtcg
     7141 ccatggcgtg gccgttggcg tggaggagct ggcggtcgtc gagcatgatg ccgatgtggc
     7201 cgccccagca gacgagatcg ccgcggcgaa gcccggacag atcggggccg gtctcgacag
     7261 gcgcgccgag ctcccgggcc atcatgtcgc tgtcccgcgg cgccgcgatg ccggcggctg
     7321 cgagggcgat ctggacgagg cccgagcagt cgaggccgag gctcgtcttg ccgccccaca
     7381 ggtacggggt gccgacgaag cgctcggcca cggcgacgaa atccggttcg tggtgcgacc
     7441 ggtcggcgag atgggcaagg tggacgaagc cgccggtcgc cagttgcgcg taatccccct
     7501 cgaccgcccg gactgcgacg gccgcgttca gactcaggaa ccccgttggc gggagcttca
     7561 ggttggggcc cggatagaca aaggtgcgca gcgcgcagac gcgctggtcc ggctccaccc
     7621 cgatctctcc gagcgcatcg gacggcagat agccgacgta gccgtcggct tcgagctgga
     7681 cccaggcgaa gccgccctgg ctatcgtaga cggtgacgcg ttcgcccatg agcgcctcgg
     7741 tgtcgagggc tgcgtcgcgc gccggatggc gccggaccgg cgccgcaggc gcaaggacgc
     7801 gcttctgctc gccatcggtg aagcgcgccg cctcgacgcg cccgcgcagg cgggccgcgg
     7861 cgagatcggg acggacgggg ttgatgcgcg gatcgagggt catgggccaa gcgactggta
     7921 gcagccgagg cctatgatgc caaagcgacg ttaacgtggc gctgcgtcgg ggtcaggcgc
     7981 cgccgtagcg ctcgcgcagg agggcgtaca cgacccgcgc gccctggacc tcgccgccct
     8041 ccgggcgccc gggctttgcc ttcggcgtcc aggcgtagat gtcgaagtgg acgtgcgccc
     8101 gcgctcggga cgcgaagcgc cgcaggaaca gcgcggccgt gatcgagccc gccatgggcc
     8161 cgctcgagac gtggttcacg tcggcgatct tcgactcgag catactggca ta
//
LOCUS       DASQWN010000140         2219 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_308925, whole genome shotgun sequence.
ACCESSION   DASQWN010000140 DASQWN010000000
VERSION     DASQWN010000140.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2219)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2219)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2219
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_308925"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            24..134
                     /locus_tag="VE686_02635"
     CDS             24..134
                     /locus_tag="VE686_02635"
                     /inference="COORDINATES: protein motif:HMM:NF019501.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BA14K family protein"
                     /protein_id="HYY83383.1"
                     /translation="MDGRLADWCARRYRTFDPITGTFMAPSGERLVCTYP"
     gene            188..>2219
                     /locus_tag="VE686_02640"
     CDS             188..>2219
                     /locus_tag="VE686_02640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019196975.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PAS domain S-box protein"
                     /protein_id="HYY83384.1"
                     /translation="MLEDSAGGPIADEQRFRLLVEAVVDYAIYMLDPTGRVVSWNAGA
                     QRFKGYTEAEILGHHFSRFYTDEDRAAGVPARALATAAREGRFEAEGWRVRKDGARFW
                     ANVVIDPIRTPSGELVGFAKVTRDLTARKATEDALRLSEERFRRLVQGVTDYAIYMLD
                     PDGRVANWNAGAERIKGYTADEMIGQHFSRFYTERDRAAGIPAHALATAAGAGKYENE
                     ALRVRKDGTEFWAHVVIDPIYDDDGKLAGFAKITRDVTERRRAEEALADARAKLLQSQ
                     KMEAVGQLTGGIAHDFNNLLTAVLGSLELLRKRLPDDPKLRRLLDNAVQGAQRGASLT
                     QRMLAFARRQDLKVEAVDVSDLVRGMSDLLQRSIGSRIRIETRFPLGLAAAQGDPNQL
                     ELALLNLVLNARDAMPEGGTIVLSARQETIGPDNPDRLAPGDHVCISVADTGEGMDEA
                     TLARAAEPFFTTKGVGRGTGLGLSMVHGVAEQSGGRLLLRSRPGEGTTAEIWLRPADL
                     AAVVDQALPEETGAPVRARPLTILVVDDDALVLMNTAAMLDDLGHEVLEASSGQQALR
                     VLRRGKPVDLVLTDQVMPGMTGLDLLAEIAAEWPGVPVVLASGYAELPAGTDPDLPRL
                     AKPFQQDALARAVAQHCAPRRTAPSSRSGSAPERGARASGPLLLLALLGAVAV"
BASE COUNT          317 a          826 c          768 g          308 t
ORIGIN      
        1 cggccccgcc gccgcccgcc accgtggacg gccgtctcgc cgactggtgc gcgcgacgct
       61 atcggacctt cgacccgatt accgggacgt tcatggcgcc ttcgggcgag cgcctggtct
      121 gcacctaccc gtaagggccc ctagcgtgcc gcccgggcgc atgcgcccgg gcgtgtgagg
      181 gcagcgtatg ctggaagaca gcgccggggg tccgatcgcc gacgagcagc gcttccggct
      241 gctcgtcgag gccgtcgtcg actacgccat ctacatgctc gacccgacgg gcagggtggt
      301 gagctggaac gccggcgcgc agcgcttcaa gggctacacc gaggccgaga tcctcggcca
      361 tcacttctcg cgcttctaca ccgacgagga ccgggccgcc ggcgtcccgg cacgggcgct
      421 cgcgacggcg gccagggagg ggcggttcga ggccgagggc tggcgcgtgc gcaaggacgg
      481 cgcgcgcttc tgggccaacg tcgtcatcga cccgatccgc accccgtccg gcgagctcgt
      541 cggcttcgcc aaggtcacgc gcgacctgac cgcccgcaag gccacggagg acgcgctgcg
      601 cctgagcgag gagcgcttcc gccgccttgt ccagggcgtg accgactacg ccatctacat
      661 gctcgatccg gatgggcgag tggcgaactg gaacgccggc gccgagcgca tcaagggcta
      721 caccgccgac gagatgatcg ggcagcattt ctcgcgcttc tacaccgagc gcgaccgcgc
      781 cgccggcata cccgcacacg ccctcgcgac ggctgccggg gccggcaaat acgagaacga
      841 ggcgctccgg gtccgcaagg acggcaccga gttctgggct cacgtcgtca tcgacccgat
      901 ctacgacgat gacggcaagc ttgcgggctt cgccaagatc acgcgggacg tcaccgagcg
      961 ccgccgggcc gaggaggctc tcgcggatgc ccgggcgaag ctcctgcagt cgcagaagat
     1021 ggaggcggtc gggcagctca cgggaggcat cgcccacgac ttcaacaacc tcctgacggc
     1081 cgtgctcggc agcctcgagc tcctgcgcaa gcgcctgccg gacgacccga agctgcggcg
     1141 gctcctagac aatgcggtcc agggagccca gcgcggggcg tcgctgacgc agcgcatgct
     1201 cgccttcgcg cggcgccagg acctcaaggt cgaggcggtc gacgtgtccg acctggtgcg
     1261 cggcatgtcg gatctcctgc agcgctcgat cggctcccgc atccgtatcg agacccgctt
     1321 tccgcttggg ctggccgccg cccagggcga tcccaaccag ctcgagcttg cgctcttgaa
     1381 cctcgtcctc aatgcccgcg acgccatgcc ggagggcggc accatcgtcc tctcggcgcg
     1441 ccaggagacg atcggccccg acaaccccga ccgcctcgcg cccggcgacc acgtctgcat
     1501 ctcggttgcc gataccgggg aaggcatgga cgaggcgacg ctcgcgcgcg ccgccgagcc
     1561 gttcttcacc accaagggcg tcgggcgcgg cacgggcctc ggcctctcca tggtgcacgg
     1621 cgtcgccgag cagtcgggag gccggctcct tctgcgcagc cgaccgggcg agggcacgac
     1681 ggcagagatc tggctccggc ccgcggacct cgccgccgtc gtcgaccagg cgctcccaga
     1741 ggagacaggt gcgcccgtgc gggcgcgtcc cctgacgatc ctcgttgtcg acgacgacgc
     1801 gctcgtcctc atgaacaccg ccgccatgct ggacgacctc ggccacgagg tcctcgaggc
     1861 gtcgtctggt cagcaggcgc tccgggtgct gcgccgcggc aagcccgtgg acctcgttct
     1921 gaccgatcag gtcatgcccg gcatgaccgg gctcgacctg ttggccgaga tcgcggccga
     1981 gtggccgggc gtcccggtcg tgctggcgag cggctacgcg gagctgccgg ccgggaccga
     2041 tccggacctg ccgaggctcg ccaagccgtt ccagcaggac gcgctcgccc gcgccgtcgc
     2101 gcagcattgc gccccgcgga ggacggcacc gtcatcccgt tccggcagcg cccctgagcg
     2161 gggggctcgc gcctcaggtc cgcttctcct gcttgcgctt ctgggcgccg ttgccgtcc
//
LOCUS       DASQWN010000141         2395 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1313205, whole genome shotgun sequence.
ACCESSION   DASQWN010000141 DASQWN010000000
VERSION     DASQWN010000141.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2395)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2395)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2395
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1313205"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            109..1167
                     /gene="ugpC"
                     /locus_tag="VE686_02645"
     CDS             109..1167
                     /gene="ugpC"
                     /locus_tag="VE686_02645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007592328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sn-glycerol-3-phosphate ABC transporter
                     ATP-binding protein UgpC"
                     /protein_id="HYY83385.1"
                     /translation="MAGVEVRNVRKAFGTTQILHGVSIDIPDGAFVILVGPSGCGKST
                     LLRMIAGLENITGGEIRIGTRVVNNVPPKERDIAMVFQNYALYPHMTVAQNMGFSMKL
                     AKAPKEAADREVRRAARILGLKPLLERYPRQLSGGQRQRVAMGRAIVRDPQVFLFDEP
                     LSNLDAKLRVAMRAEIKELHQRLKTTTVYVTHDQIEAMTMADKIVVMHDGIVEQMGAP
                     LELYDRPNNLFVAGFIGSPAMNFVKGKVEGGRFHADGGMYLPLKNAPAASEGRPAVYG
                     TRPEHFRLDDDGVPVEVVVVEPSGSETQIVVRGGGQEMVAVFRDRFLPHPGETIRINP
                     DPNLVHLFDAETGQRLIP"
     gene            1219..>2395
                     /locus_tag="VE686_02650"
     CDS             1219..>2395
                     /locus_tag="VE686_02650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020091915.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HYY83386.1"
                     /translation="MSHFDRRTLIKGGAALGLAGATNLLDFAKAWAQASPFKPEPNST
                     LNVLRWKRFVEAEDAAFMKMVDAFSKATGTKVNITNESFDDIQPKASVAANTGQGPDM
                     VWGLYSFPFLFPEKCIEVTDVADYLGKKYGGWVKTAEAYGKYKDKWIAIPVAFNGGYI
                     NYRISAVKKAGFDKVPADTAGFLELCKALKKNNTPCGFALGHATGDGNSWAHWALWSH
                     GGNLVDKNEKVVIDSPETLAALEYVKQLYATFIPGTAAWNDSNNNKAFLAGELFLTAN
                     GISIYAAAKVDPSKKEIAEDMDHALWPIGPVGKPTEFQLAFPILAFKYSKVPNACKAF
                     MAFMLEAENYNPWLEGAQGYLTHPLNAYDANPVWTADPKNTVFREASKRTLAAGGESP
                     "
BASE COUNT          449 a          836 c          756 g          354 t
ORIGIN      
        1 aatcggtcgg tggcctgagg cgaggcgccc gacgttccgc ccccatccaa ccccggccgg
       61 ttgggccgca tcgaacggct gaaacgctta gcaagggacg ggcgcatcat ggcgggagtt
      121 gaggtcagaa acgtccgcaa ggctttcggg acgacgcaga tcctgcacgg cgtgtcgatc
      181 gacatcccgg acggggcctt tgtgatcctg gtcggcccct cgggctgcgg aaaatcgacg
      241 cttctgcgca tgatcgccgg cctcgagaac atcaccggcg gcgagatccg gatcggcacc
      301 cgggtcgtga acaatgtccc cccgaaagag cgggacatcg ccatggtgtt ccagaactac
      361 gcgctctatc cgcacatgac ggtggcccag aacatgggct tctccatgaa gctggccaag
      421 gcgccgaagg aggcggcgga ccgcgaggtt cgccgcgccg cgcgcatcct gggcctcaag
      481 ccgctgctcg agcgctaccc ccggcagctc tcgggcgggc agcgccagcg cgtcgccatg
      541 ggccgcgcca tcgtgcgcga cccgcaggtc ttcctcttcg acgagccctt gtcgaacctc
      601 gacgccaagc tgcgcgtcgc catgcgggcc gagatcaagg agctgcacca gcggctcaag
      661 accacgaccg tctacgtcac gcacgaccag atcgaggcca tgaccatggc cgacaagatc
      721 gtcgtcatgc acgacggcat cgtcgagcag atgggcgcgc cgctcgagct ctacgaccgg
      781 ccgaacaacc tcttcgtcgc cggcttcatc ggctcgccgg ccatgaactt cgtcaagggc
      841 aaggtcgagg gcgggcgctt ccatgccgac ggcggcatgt accttcccct caagaacgcg
      901 ccggccgcct ccgaaggccg cccggcggtc tacggcacgc ggcccgagca tttccggctc
      961 gacgacgacg gggtgccggt ggaggtggtg gtcgtcgagc cgagcggctc cgagacccag
     1021 atcgtcgtcc gcggcggcgg ccaggagatg gtcgcggtgt tccgcgaccg cttcctgccc
     1081 caccccggcg agacgatccg catcaacccg gacccgaacc tcgtccatct cttcgacgcc
     1141 gagacgggcc agcgcctgat tccgtagcaa cgacgccgct ccaaggcggc gcaaccgatt
     1201 tccgagggag aaaacgtcat gtcgcatttc gatcgccgca cgctcatcaa gggcggcgcc
     1261 gccctcggcc tcgccggggc cacgaacctt ctcgactttg ccaaggcctg ggcccaggcg
     1321 tcgcccttca agccggagcc gaactcgacc ctcaacgtgc tgcgctggaa gcgcttcgtc
     1381 gaggccgagg acgcggcctt catgaagatg gtcgacgcct tctcgaaggc gacgggcacc
     1441 aaggtgaaca tcaccaacga gtcgttcgac gacatccagc ccaaggcctc ggtcgcggcc
     1501 aacaccggcc agggccccga catggtgtgg gggctgtact cgttcccgtt cctgttcccc
     1561 gagaagtgca tcgaggtcac cgacgtcgcc gactacctcg gcaagaaata cggcggctgg
     1621 gtcaagaccg ccgaagccta cggcaagtac aaggacaagt ggatcgcgat ccccgtggcc
     1681 ttcaacggcg gctacatcaa ctaccgcatc tcggcggtga agaaggcggg cttcgacaag
     1741 gtaccggccg acacggcggg cttcctcgag ctctgcaagg ccttgaagaa gaacaacacg
     1801 ccgtgcggct tcgcgctcgg tcacgccacc ggcgacggca actcgtgggc ccactgggcg
     1861 ctctggtcgc acggcggcaa tctcgtcgac aagaacgaga aggtcgtcat cgactcgccc
     1921 gagaccctgg cggcgctcga gtacgtcaag cagctctacg ccaccttcat ccccggaacg
     1981 gccgcctgga acgactcgaa caacaacaag gcgttcctgg cgggcgagct cttcctgacc
     2041 gcgaacggga tttcgatcta cgccgccgcc aaggtcgatc cgagcaagaa ggaaatcgcc
     2101 gaagacatgg accacgccct gtggcccatc ggtccggtcg gcaagccgac ggagttccag
     2161 ctcgccttcc cgatcctcgc cttcaagtac tcgaaggtgc cgaacgcctg caaagccttc
     2221 atggcgttca tgctcgaggc cgagaactac aacccgtggc tcgagggcgc gcagggctac
     2281 ctgacgcatc cgctcaacgc ctatgacgcc aaccccgtgt ggacggcgga cccgaagaac
     2341 acggtcttcc gcgaggcctc gaagcggacg ctcgcggcgg gcggcgagtc gccgg
//
LOCUS       DASQWN010000142         2458 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_23453, whole genome shotgun sequence.
ACCESSION   DASQWN010000142 DASQWN010000000
VERSION     DASQWN010000142.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2458)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2458)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2458
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_23453"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..387
                     /locus_tag="VE686_02655"
     CDS             <1..387
                     /locus_tag="VE686_02655"
                     /EC_number="3.4.24.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006019000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M48 family metalloprotease"
                     /protein_id="HYY83387.1"
                     /translation="AILIALALIAIAWILSIVIRFALSRQREYLADAGSVELTKNPDA
                     MITALRKIENRGELPRANSAVMEMCIDNPRSGFADLFATHPAIEDRIDALVRYAGGHR
                     PPSLPELPAGPEAPRPWGPASHSSPA"
     gene            complement(395..1549)
                     /locus_tag="VE686_02660"
     CDS             complement(395..1549)
                     /locus_tag="VE686_02660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010683930.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M20 family metallopeptidase"
                     /protein_id="HYY83388.1"
                     /translation="MRKDEVLSWLDGQHEAMIELLRDAVNIDSGSYNKAGVDAVGKVF
                     EDHLARSGIPCERVPDDTFGDCIRAVVSGTGRGENRPVVLMGHRDTVFPDGTAAERPF
                     RIEGDRAYGPGVADMKAGLVINTFVLEAFARAGGAPIPLVGLYTSDEEIASPSSRPVI
                     ENEARGARAVLNAEPGRPSGNLVKQRKGACFMEVEILGKPAHSGANHEQGASAIEALA
                     RKITRMHALTDYESGTTVNVGLIKAGSSVNTVAPHAWAAIDVRFKTIEAMNEVRARID
                     EILQHEDVPGTSAKVLGQRLFLPLVPTLESEALFKFYAEGARELGFEVDAEFTGGSAD
                     SGFTAAVGAPTLCATGPVGGKAHTAEEYLEVRTLVPRAKALALTIMRIAD"
     gene            complement(1635..>2458)
                     /locus_tag="VE686_02665"
     CDS             complement(1635..>2458)
                     /locus_tag="VE686_02665"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HYY83389.1"
                     /translation="LERIQHFEPASLPLIVGLAAVAVIAVVLLVRVEGRAASPLLPLS
                     LLRTPAIWRSDALAACHGAALVSLLTLMPIYLRVVRGTSASETGLLLLPLAAGIGLGA
                     MVTGRLVSRTGRTAIFPSVGLIPVALLLVLLAVAAPVMSNTVLVLVFTTLSLFMGTVM
                     GVVQVTVQTVAGPAMIGSAAASVQFSRSIGAAFGTSVATAVLFSVLAFSDPDAASAFG
                     ALIQTGPAALHSWPAARQAVIVAEVAEAFRAAFLAVAVFAVGALALAWSIPMRRL"
BASE COUNT          392 a          874 c          854 g          338 t
ORIGIN      
        1 gccatcctga tcgcgctcgc gctcattgcc atcgcctgga tcctttccat cgtcatccgc
       61 tttgcgctct cgcggcaacg cgaatacctg gccgacgccg gctcggtgga gctgacgaag
      121 aatcccgacg caatgatcac cgcgctgcgc aagatcgaga accgtggcga gctgccgcgc
      181 gccaattccg cggtcatgga gatgtgcatc gacaatccgc gctccggctt cgcggacctc
      241 ttcgccaccc atccggcgat cgaggaccgc atcgacgcgc tcgtgcgcta cgccggcggc
      301 caccgtccgc cgtccttgcc cgagttgcct gccgggccgg aggccccgcg gccgtggggg
      361 ccggcgagcc actcctcgcc ggcgtgaagg ccggtcagtc ggcgatgcgc atgatggtca
      421 gcgccagcgc cttagcccgc ggcacgagcg tgcggacttc gaggtattcc tccgccgtat
      481 gcgccttgcc gccaacgggg cccgtggcgc acagggttgg cgcgcctacc gccgccgtga
      541 agccggaatc ggccgagccg cccgtgaact cggcgtcaac ctcgaagccg agctcgcgcg
      601 cgccctcggc gtagaacttg aacaacgcct cgctttcgag cgtcggcacg agcggcagga
      661 acagccgctg gccgagcacc ttggcgctcg tcccgggcac gtcctcgtgc tgcaggatct
      721 cgtcgatgcg ggcgcgcacc tcgttcatgg cctcgatggt cttgaagcgc acgtcgatcg
      781 ccgcccaggc gtgcggcgcg acagtgttga cggagctgcc ggccttgatg aggccgacgt
      841 tgacggtcgt gccgctctcg taatcggtga gcgcgtgcat gcgggtgatc ttccgggcga
      901 gcgcctcgat ggcactcgcg ccctgctcgt ggttcgcgcc cgaatgcgcg ggcttaccga
      961 gaatctcgac ctccatgaag cacgccccct tgcgctgctt gacgaggttg ccgctcggcc
     1021 gtccaggctc cgcgttgagg acggcgcggg cgccccgagc ctcattctca atgactggcc
     1081 gtgacgaggg agaggcgatc tcctcgtccg acgtgtacag gccaaccaac gggatcggcg
     1141 ccccgcccgc ccgggcaaaa gcctcgagca cgaaggtgtt gatgacgagg ccagccttca
     1201 tgtcggcgac ccccggcccg taggcgcggt cgccctcgat ccggaacggc cgctcggcgg
     1261 cggtgccgtc ggggaacacc gtgtcccggt ggcccataag caccaccggg cggttttcgc
     1321 ctcggcccgt gccgctcacg accgctcgga tgcagtcgcc gaaggtatcg tccggcaccc
     1381 gctcgcaagg gatgccgctg cgggcgaggt ggtcctcgaa gaccttgcca acagcgtcga
     1441 cgcccgcctt gttgtagctg cccgagtcga tgttcaccgc atcccgcagg agctcgatca
     1501 tcgcctcgtg ctggccgtcg agccagctca gcacctcgtc cttccgcatt gccctcaccc
     1561 cttcacccct ctgaggagcc ggactgtgga ccaggacggc gcagccgcgc taccccgcgg
     1621 gcgtcgttgc accgtcacag ccgccgcatg gggatcgacc aggcgagcgc gagcgcgccc
     1681 acggcaaaca ccgcgacggc gaggaatgcc gcccggaagg cctccgccac ctcggcgacg
     1741 atgacggcct ggcgcgcggc gggccagctg tggagcgccg cgggtcccgt ctggatcagc
     1801 gcgccgaagg cgctcgccgc gtcgggatcg ctgaaggcga gcaccgagaa caggacagcc
     1861 gtcgcaacgg aggttccgaa ggcggcgccg atggagcgcg agaactgcac cgaagccgcg
     1921 gccgagccga tcatcgccgg cccggcaacg gtctgcaccg tgacctgcac cacgcccatg
     1981 accgtcccca tgaacaaaga cagggtcgtg aacacgagca ccaggaccgt gttgctcatg
     2041 accggcgccg cgacggcgag gaggacgagg aggagcgcga cggggatgag gccgaccgag
     2101 gggaagatgg cggtccgccc ggtccggctt acgagccggc cggtgaccat cgcgccgagg
     2161 ccgatcccgg ccgcgagcgg caggagcagg agcccggtct cggaggcgga ggtgccgcgc
     2221 acgacgcgca ggtagatcgg catgagcgtc agaagcgaga caagcgccgc gccgtggcag
     2281 gccgccagcg cgtcgctgcg ccagatggcg ggcgtgcgca gcaaggagag cggaagcaga
     2341 ggcgacgcgg cccggccctc gacgcgcacg agcagcacca cggctatgac cgcgacggcg
     2401 gcgagcccga cgatgagcgg caacgaggcg ggctcgaaat gctggatgcg ctcgagcg
//
LOCUS       DASQWN010000143         3032 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_23641, whole genome shotgun sequence.
ACCESSION   DASQWN010000143 DASQWN010000000
VERSION     DASQWN010000143.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 3032)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3032)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3032
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_23641"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(98..565)
                     /locus_tag="VE686_02670"
     CDS             complement(98..565)
                     /locus_tag="VE686_02670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015927085.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="META domain-containing protein"
                     /protein_id="HYY83390.1"
                     /translation="MNAFRLALLIAALAAATAAQAQSQRRGNEDQRVKDKGEAPPPRV
                     DKIFPVKASWVAVSLNGKAFSGDRPSFVLDEQFRMRGFAGCNTFSATSYPLRQQGLAV
                     GPFALTKKTCDKGIMASERAFLTALRGAARWDSDGKELVVKGTAGDLKFERVL"
     gene            complement(655..1620)
                     /gene="hisG"
                     /locus_tag="VE686_02675"
     CDS             complement(655..1620)
                     /gene="hisG"
                     /locus_tag="VE686_02675"
                     /EC_number="2.4.2.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009763855.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003879 - ATP phosphoribosyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0000105 - histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP phosphoribosyltransferase"
                     /protein_id="HYY83391.1"
                     /translation="MSDGPLLLAVPSKGRLQENAAAFFRRAGLAFTQGRGARDYRAAV
                     SGLPDVEVMFLSAGEIVTQLATGGVHVGVTGEDLIREEIPNAEAAVELLTPLGFGNAN
                     VVVAVPQAWIDVRVMADLDEVAADLRARHGRKMRVATKYVNLTRRFFSQMGVSDYRIV
                     ESLGATEAAPSSGAAEVIVDITTTGATLAANALKIVEDGVILRSEANLVASLGAPWGE
                     RARTAVSAVLARIAAEEEARTTREVRATLGNGTGEALEELAVRFGARLPLGVAEAVLH
                     VPAERVFEVVEALLGAGARDVTVRTLDYVFRPSNGLTERLLARLG"
     gene            complement(1617..2729)
                     /locus_tag="VE686_02680"
     CDS             complement(1617..2729)
                     /locus_tag="VE686_02680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019401304.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP phosphoribosyltransferase regulatory
                     subunit"
                     /protein_id="HYY83392.1"
                     /translation="MTSRTPAQASDALLALFERDGYARVEPAILQSADVFLELSGEDM
                     RRRMFVTQDAAGQELCLRPEYTIPVCREHLAAAGPSPAAYSYAGPVFRLRVGEAGEFL
                     QAGLESIGRADAAAADAEILALALEGLAVVGRTDVAVRLGDIGLLDAVVEALGVGAAA
                     KRRILRGVVSGRGLDGIAEPAPNNGTAEHAGLLAAIEGQAPQAAKAFVEDVIAIAGIS
                     RVGGRTAGEIAERFLARAANRSGLSDEARVALRRYLSIGGDPDAAAREIRALARDAKL
                     DVDRAVDAFEERTGFMEARGLDVTTFAFAADFARNVDYYTGFIFEVQDPGRADGKAIV
                     GGGRYDRLLQHLGARAPVPAVGCSFWLDRIVGEGRS"
     gene            complement(2852..>3032)
                     /locus_tag="VE686_02685"
     CDS             complement(2852..>3032)
                     /locus_tag="VE686_02685"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY83393.1"
                     /translation="TEALVELADAAIGAVTPAARKMMGGGSRASKRGSGSGSGAGAAG
                     GMSGGSAADSDTGGR"
BASE COUNT          435 a         1084 c         1117 g          396 t
ORIGIN      
        1 cgtgatgctc cagcagaagg cgtgaggctc cagcagaagg cgtgaggctc cagcagatcg
       61 ttgttgcgcg gcgtcgggcc ctgcgtcgga gcgatggcta cagaacgcgt tcgaatttca
      121 ggtcgccggc ggtgcccttc acgacgagtt ccttgccgtc ggaatcccat ctcgcggcgc
      181 cgcgcagggc ggtcaggaag gcgcgctccg aggccatgat gcccttgtcg caggtcttct
      241 tggtgagggc gaaaggaccc acggcaagcc cctgctggcg cagcggatag gacgtcgccg
      301 agaaggtgtt gcagcccgcg aagccgcgca tccggaactg ctcgtcgagg acgaagctcg
      361 gccggtcgcc cgagaaagcc ttgccgttga gcgagaccgc gacccatgac gccttgacgg
      421 gaaagatctt gtccacacgc ggcggcgggg cctcgccctt gtccttgacg cgctgatcct
      481 cgttgccccg gcgctgcgac tgcgcctgcg cggcggtcgc ggccgcaaga gcggcgatca
      541 gcagcgcgag ccggaaggca ttcatgaagt cccccaatcg atgtccgacg aacggcggga
      601 ccatagggtt gcggaaggcg gcgcgcaacg gccccgcgcg tccaagcgcc gtcctcagcc
      661 gagccgggcg agcaggcgct cggtgagccc gttcgacggg cggaacacgt agtcgagggt
      721 gcgcactgtc acgtcccgcg cacccgcccc gagcagcgcc tcgacgacct cgaagacgcg
      781 ctccgccggc acgtgcagga ccgcttcggc gacgccgagg gggagacgcg cgccgaagcg
      841 caccgcgagc tcctcgagcg cctcccccgt gccgttgccg agggtcgcgc ggacctcgcg
      901 cgtggtgcgg gcctcctctt cggcggcgat gcgggcgagg acggccgaga ccgctgtgcg
      961 cgcccgttcg ccccacgggg cgcccaggga ggcgacgagg ttcgcctcgg agcgcaggat
     1021 gacgccgtcc tcgacgatct tgagggcgtt ggcggcgagc gtcgcgcccg tcgtggtgat
     1081 gtcgacgatg acctcggccg ccccggagct cggcgccgcc tcggtcgcgc cgaggctctc
     1141 gacgatgcgg tagtccgaga cccccatctg cgagaagaag cggcgcgtca ggttcacgta
     1201 cttcgtggcg acccgcatct tgcgcccgtg ccgcgcgcgc aggtccgccg cgacctcgtc
     1261 gagatcggcc atgacgcgca cgtcgatcca cgcctgcggc accgccacga cgacgttggc
     1321 gttgccgaag ccgagcggcg tcaggagctc gacggcggct tcggcgttcg ggatctcctc
     1381 gcggatgagg tcctcgccgg tgacgccgac gtgcacgccg ccggtcgcga gctgcgtcac
     1441 gatctcgccg gccgacagga acatcacctc gacgtcggga agccccgaga cggcggcgcg
     1501 gtagtcgcgc gcgccgcgcc cttgcgtgaa cgcgagcccg gcccggcgga agaacgccgc
     1561 cgcgttctcc tgcaggcggc ccttggaggg aacggcgagg aggagcgggc cgtcgctcat
     1621 gaccgcccct cccccacgat gcggtcgagc cagaaggagc agccgacggc cggcacgggc
     1681 gcccgcgccc cgaggtgctg cagcaggcgg tcgtagcgtc cgccgccgac gatcgccttg
     1741 ccgtcggcgc ggccggggtc ctgcacctcg aagatgaagc ccgtgtagta gtcgacgttg
     1801 cgggcgaaat cggctgcgaa ggcgaaggtc gtgacgtcga ggccgcgcgc ctccatgaag
     1861 ccggtgcgct cctcgaacgc gtcgacggcc cgatcgacgt cgagctttgc gtcgcgcgcc
     1921 agggcgcgga tttcgcgcgc ggcggcatcg gggtcgccgc cgatggagag atagcgccgc
     1981 agcgccaccc gcgcctcgtc gctcaagccg gagcggttgg cggcgcgcgc aaggaagcgc
     2041 tccgcgatct cgcccgcggt gcggccgccg acgcgcgaga tgcccgcaat ggcgatgacg
     2101 tcctcgacga aggccttggc ggcctggggg gcctggccct cgatggcggc gagcagaccg
     2161 gcgtgctcgg ccgtgccgtt gttcggcgcg ggctccgcga tgccgtcgag tccgcgaccg
     2221 gagacgacgc cgcgcaggat gcggcgcttc gctgccgcgc cgaccccgag cgcttccacg
     2281 acggcgtcga gaagcccgat gtcgccgagc cggacagcga cgtccgtgcg cccgacaacg
     2341 gcgaggccct cgagtgcgag cgccaggatc tcggcgtcgg cggccgcggc gtccgcgcgc
     2401 ccgatcgact cgagcccggc ctggaggaac tcccccgcct cgccgacgcg caggcggaag
     2461 accggcccgg cgtacgaata ggcggcagga ctcggcccgg cggcagcaag gtgctcgcgg
     2521 cacaccggga tcgtgtactc gggccgcagg cacagctcct gccccgcggc gtcctgcgtg
     2581 acgaacatgc gccggcgcat gtcttcgccc gacagctcga ggaacacgtc cgcgctctgc
     2641 aggatcgcgg gctccacgcg cgcgtagccg tcgcgctcga agagcgcgag gagggcgtcg
     2701 ctcgcctgtg ctggagtgcg tgaggtcatg gtgcggttcc gggcccgtct gtagcaaccg
     2761 agggcccgga acgcgatgga attcaggcgt gacggtgaac gggaaaaagg acggggcggc
     2821 cctcccgggc ggaagggccg ctaaagaccg ctcagcgccc gccggtgtcg gagtcggcgg
     2881 cggacccgcc gctcatgccg ccggccgcgc cggcgcccga tccgctcccg ctaccgcgct
     2941 tcgacgccct ggatccgccg cccatcatct tgcgcgcggc gggcgtcacc gccccgatcg
     3001 cggcatcggc gagctcgacc agcgcctcgg tt
//
LOCUS       DASQWN010000144         3047 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1015325, whole genome shotgun sequence.
ACCESSION   DASQWN010000144 DASQWN010000000
VERSION     DASQWN010000144.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 3047)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3047)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3047
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1015325"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..342)
                     /locus_tag="VE686_02690"
     CDS             complement(<1..342)
                     /locus_tag="VE686_02690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012255631.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nicotinate phosphoribosyltransferase"
                     /protein_id="HYY83394.1"
                     /translation="MVDIATRVYNHTWKIDPIVRSVIDTDFYKLLMAQTIWRRHRDVA
                     VTFGIHNRTTRVRLADIIDEGELREQLEHVRSLKLTRGESTWLRGNTFYGKRQMFSPE
                     FMDWLEGFRFPE"
     gene            complement(442..948)
                     /locus_tag="VE686_02695"
     CDS             complement(442..948)
                     /locus_tag="VE686_02695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010686116.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxamine 5'-phosphate oxidase family
                     protein"
                     /protein_id="HYY83395.1"
                     /translation="MVHDHRAHEGADKLYALIDDIRICMMTTVEEDGRLASRPMYGLE
                     ADKAGDLWFFTRMASPKMTEISRDGHVNLAYSHPSKQHYISVSGRAEIVRDIGHIKDK
                     WAEPMRTWFPEGKDDPQLALIRVHPERGEFWDSPSSTVMYLYGYAKAALTGASPTELA
                     DVRKVDLS"
     gene            complement(1067..2851)
                     /locus_tag="VE686_02700"
     CDS             complement(1067..2851)
                     /locus_tag="VE686_02700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018184488.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM protein"
                     /protein_id="HYY83396.1"
                     /translation="MGTFHVEIVKPSHYDKDGYVIQWWKAWIPSNSMACLYAISQDCA
                     RRKILGNDVAIEVNAYDEMNIKVPIEKIAARIRQPGHSGLVCLVGVQSNQFPRAMAIA
                     RQFRERGITVAIGGFHVSGVMAMLKDLTPELQEAVDLGIHLFAGEAEEHFGSFLQDVH
                     AGTAKPVYNYMNDLPNLQTQVIPYLPRELVQRYDGVLSSFDAGRGCPFQCSFCTIINV
                     QGRKSRWRDADDIERIVLENEKQGIHRFFITDDNFARNRNWEAIFDRMGDLREAGHSI
                     HFLIQVDVLAHKIPGFIEKAARAGCKYVFIGLESINPENLVHMKKNQNRITEYRTMFQ
                     AWKQAGIVTYAGFIMGLPGDTPETIKRDIGIIQEELPVDSLEFTMLTPLPGSEDHKKL
                     HESGTWMDPDLNKYDLETVTVRHARMSPEVWQQTYADMWNWYYTDEHVERIMKRNIAY
                     GIKPHRAMRTTLQIYGAANFEGVHPQQCGYLRRKDRTQRRPELPQVPAVLFYPQFAWE
                     SAVKYTRFGLYALKLHRMRKRLEKDPAAKSYKDLATVPVVDAENEHLAMFELNASSRA
                     AVDKARRQTQERKAREHGAETVPLEAAE"
BASE COUNT          458 a          955 c         1038 g          596 t
ORIGIN      
        1 ctcggggaag cggaagccct cgagccagtc catgaactcg ggcgagaaca tctggcgctt
       61 gccgtagaag gtgttgccac gaagccaggt cgactcgccc cgcgtcagct tgagcgagcg
      121 cacgtgctcg agctgctcgc gcagttcgcc ttcgtcgata atgtcggcga ggcgtacgcg
      181 cgtggtgcgg ttgtggatgc cgaacgtcac cgccacgtcg cgatggcggc gccagatcgt
      241 ctgcgccatc aggagcttgt agaagtccgt gtcgatcacg gagcggacga tcggatcgat
      301 cttccaggtg tgattgtaga cgcgcgttgc gatgtcgacc atcggccctc aagcccaacg
      361 gagctgcggc cggacaatgc cgcaacccgg ccgccgcggc aaagggcgga gctccgccct
      421 ccgcaccggc tggccggccg gttagctcag gtcgaccttg cggacgtcgg cgagctcggt
      481 cgggctcgcg cccgtgagcg cggccttggc gtagccgtac aggtacatga ccgtgctcga
      541 cgggctgtcc cagaactcgc cgcgctcggg gtgcacgcgg atgagcgcga gctgcgggtc
      601 gtccttccct tccgggaacc aggtccgcat cggctccgcc cacttgtcct tgatgtggcc
      661 gatgtcgcgc acgatctcgg cccggcccga gaccgagatg tagtgctgct tcgacgggtg
      721 cgagtaggcg aggttcacgt gcccgtcgcg gctgatttcg gtcatcttcg gcgacgccat
      781 gcgggtgaag aaccagagat cgccggcctt gtcggcctcg agcccgtaca tgggccggct
      841 ggcgaggcgg ccgtcctcct cgacggtcgt catcatgcag atgcggatgt cgtcgatgag
      901 cgcgtagagc ttgtcggcgc cctcgtgcgc gcggtggtcg tgaaccatgt tgcctcctcc
      961 ggtctcgcca tcaacggggc cgccgcgctt tggtttcggt gacctcgcgc ggctatgacc
     1021 gactgggctc ggagcctcac ggattgttga gggaacgatc gcggcgctac tcagccgcct
     1081 cgagtggcac ggtttcggcg ccgtgctcgc gcgccttgcg ctcctgcgtc tggcggcggg
     1141 ccttgtcgac cgcggcgcgg gaggaggcgt tgagctcgaa catggccagg tgctcgttct
     1201 cggcatcgac caccgggacg gtagcgaggt ccttgtagct cttcgccgcc gggtccttct
     1261 cgaggcgctt gcgcatccgg tggagcttca gcgcgtagag cccgaacctc gtgtacttga
     1321 ccgccgactc ccaagcgaac tgcgggtaga acaggacggc gggaacctgc ggcagctcgg
     1381 gccggcgctg cgtccggtcc ttgcggcgca ggtagccgca ctgctgaggg tggacgccct
     1441 cgaagttcgc ggcgccgtag atctgcagcg tcgtgcgcat cgccctgtgc ggcttgatgc
     1501 cgtaggcgat gtttcgcttc atgatccgct cgacgtgctc gtcggtgtag taccagttcc
     1561 acatgtcggc gtaggtctgc tgccagactt ccgggctcat gcgcgcgtgg cggaccgtca
     1621 ccgtctcgag gtcgtacttg ttgaggtccg ggtccatcca cgtgccgctc tcgtgcagct
     1681 tcttgtggtc ctccgaaccg ggaagcggcg tcagcatggt gaactcgagc gagtcgaccg
     1741 ggagctcctc ctggatgatc ccgatgtcgc gcttgatcgt ctccggcgtg tcgccgggga
     1801 ggcccatgat gaaccccgcg taggtgacga tcccggcctg cttccaggcc tggaacatgg
     1861 tccggtactc ggtgatgcgg ttctggttct tcttcatgtg aaccaggttc tcgggattga
     1921 tgctctcgag cccgatgaag acgtacttgc agccggcgcg ggccgccttc tcgatgaacc
     1981 ctggaatctt gtgcgcgagg acatcgacct ggatcaggaa gtggatgctg tgaccggcct
     2041 cgcggaggtc gcccatgcgg tcgaagatcg cttcccagtt gcggttgcgg gcgaaattgt
     2101 cgtcggtgat gaagaagcgg tggatgccct gcttctcgtt ctcgaggacg atgcgctcga
     2161 tgtcgtcggc gtcgcgccag cgcgacttcc tgccctggac attgatgatc gtgcagaagg
     2221 agcactggaa ggggcagccg cgcccggcgt cgaacgacga caggacccca tcgtagcgct
     2281 gcacgagctc gcgggggagg tacgggatca cctgggtctg gaggttcggc aggtcgttca
     2341 tgtagttgta gaccggcttc gccgtgccgg cgtggacgtc ctgcaggaag gacccgaagt
     2401 gctcctcggc ctccccggcg aagagatgaa tgccgaggtc gaccgcttcc tgcagctcgg
     2461 gggtgagatc cttcagcatg gccatcacgc cgctgacgtg gaatccgccg atcgccacgg
     2521 tgatgccgcg ctcgcggaac tggcgcgcga tcgccatggc acgggggaac tggttcgact
     2581 ggaccccgac gaggcagacc aggcccgagt ggcccggctg gcgtatgcgg gccgcgatct
     2641 tctcgatcgg gaccttgatg ttcatctcgt cgtaggcgtt cacctcgatc gcgacgtcat
     2701 tcccgaggat cttgcgccgg gcgcaatcct gagagatggc gtagaggcag gccatcgagt
     2761 tcgacggaat ccaggccttc caccattgga tgacgtagcc gtccttgtcg tagtgcgacg
     2821 gcttgacgat ctcgacgtga aaggtcccca ccggcagtcc ccctgctctt gggcgagcgc
     2881 acgatatacc gcaaaagccc tgcttacgca gtgacatttg cgcgacaggt cctcgcgccg
     2941 cccagcgcaa gttcttccgg cgcgattgag cctttcctgt gactgcggct ccgcttacat
     3001 gcagcttgag gcccgtcccg cctcgagatt agaggagcgt ttctggt
//
LOCUS       DASQWN010000145         2247 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_805536, whole genome shotgun sequence.
ACCESSION   DASQWN010000145 DASQWN010000000
VERSION     DASQWN010000145.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2247)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2247)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2247
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_805536"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..125)
                     /locus_tag="VE686_02705"
     CDS             complement(<1..125)
                     /locus_tag="VE686_02705"
                     /inference="COORDINATES: protein motif:HMM:NF014757.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0070403 - NAD+ binding [Evidence IEA];
                     GO_process: GO:0006631 - fatty acid metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-hydroxyacyl-CoA dehydrogenase NAD-binding
                     domain-containing protein"
                     /protein_id="HYY83397.1"
                     /translation="MRTIAVIGAGIMGHGLALVFALGGHRVRITDASAETLARVP"
     gene            complement(156..1211)
                     /locus_tag="VE686_02710"
     CDS             complement(156..1211)
                     /locus_tag="VE686_02710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018260533.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004061 - arylformamidase activity
                     [Evidence IEA];
                     GO_process: GO:0019441 - tryptophan catabolic process to
                     kynurenine [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cyclase family protein"
                     /protein_id="HYY83398.1"
                     /translation="MAVGLRWKRRPEGSTWGDFGPQDQLGRLNLLTPEKVKQGVAEVR
                     EGLTFCLSLPLEYPGGNVLNPRRHPPVIRPTLRGNRPNFNVMLCEELPEATDVVCDDL
                     VVMHLQYSTQWDSLAHVGSMFDADGDGKPEPVFYNGHRAGIDVVGPTDPADAGAVGPI
                     APRTTSRAKALGIERLAEKGMQGRAAMIDLHAHLGREKTVVGYDTLMRVIEADKVEIE
                     PGDMVCLHTGFAELLLEMKGDPDPAVVNNACAALDGRDRRLLNWITDVKLVALIADNY
                     AVEAHPALPQAGCCATLPLHEHCLFKLGVNLGEIWHLTPLADWLRANGRYRFLLTAPP
                     LRLTGAVGSPTTPIATV"
     gene            1430..1810
                     /locus_tag="VE686_02715"
     CDS             1430..1810
                     /locus_tag="VE686_02715"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY83399.1"
                     /translation="MDTTELERRLAQLEAAARGDGPSAQGAAQNPGGSHGQGSDEPWS
                     EALARVHGASDYLKFTLQRIAELEAWNREMTEVTAHRLELLEREAIAAEVRAEEDEEA
                     AHEAEDWLRRIHGAVIDRLGPAPG"
     gene            1996..>2247
                     /locus_tag="VE686_02720"
     CDS             1996..>2247
                     /locus_tag="VE686_02720"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY83400.1"
                     /translation="MDNVLRLAAAQDRRSGLGPDGEEDAWIETLDLVVQATDTIRASE
                     DRIAKLEARNRELETRLAEEVKSLQARMQATDKVIERADA"
BASE COUNT          351 a          775 c          792 g          329 t
ORIGIN      
        1 tccggcaccc gcgccagggt ctcggcgctc gcgtccgtga tgcgcacccg gtgcccgccg
       61 agcgcaaaca ccagggcgag cccatgcccc atgatgccgg ccccgatgac ggcgatggtc
      121 ctcatgcgat gtctcctcga agcggcaaac ggcagctaca cggtggcgat gggcgtcgtc
      181 ggcgagccga ccgccccggt cagccgcagc ggcggcgcgg tgagcaggaa gcggtagcgc
      241 ccgttggcgc gcagccaatc ggcgagcggc gttaggtgcc agatctcgcc gaggttgacg
      301 ccgagcttga acaggcagtg ctcatgcagc ggaagcgtcg cgcagcagcc ggcctgcggc
      361 agcgcgggat gcgcctcgac ggcgtagttg tcggcaatca gcgcgacgag cttcacgtcg
      421 gtgatccagt tgaggaggcg gcggtcgcgg ccgtcgagcg ccgcgcaggc gttgttgacc
      481 accgccggat cggggtcgcc cttcatctcc agcaggagct cggcaaagcc cgtgtgcagg
      541 cacaccatgt cgcccggctc gatctcgacc ttgtcggcct cgatgacgcg catgagggtg
      601 tcgtagccga cgacggtctt ctcgcgcccg aggtgggcgt gcaggtcgat catcgccgcc
      661 ctgccctgca tgcccttctc ggccaggcgc tcgatgccga gtgccttcgc ccgcgacgtg
      721 gtgcggggcg cgatcggccc caccgcgccg gcatcggccg ggtccgtcgg gccgacgaca
      781 tcgatcccgg cgcggtggcc gttgtagaag acgggctccg gcttgccgtc gccgtcggcg
      841 tcgaacatgg atccgacgtg ggcgaggctg tcccactggg tcgagtactg caggtgcatg
      901 accacgaggt cgtcgcagac gacgtccgtc gcctcgggca gctcctcaca gagcatgacg
      961 ttgaagttcg gacggttgcc ccgcagggtc gggcggatca ccggggggtg ccgccgcgga
     1021 ttgaggacgt tgccgccggg gtactcgagg ggcagcgaga ggcagaaggt caggccttcg
     1081 cgcacctcgg cgacgccctg cttgaccttc tcgggcgtga ggaggttgag ccggccgagc
     1141 tgatcctgtg ggccgaagtc gccccacgtc gagccctccg gccgccgctt ccaacgcaat
     1201 ccgaccgcca tgtcccctcc ccagaaccgc tccccgtcgc gggaggcggg tcggcatcat
     1261 ggccacggct tgcacgcaag tcgatacggg tgctcggcac ggtttgaggt gcacaacttc
     1321 ggacgcgctg ctatctcgag gccgtcccgc tttgacttcg ggggccgaat cgatctgcct
     1381 ggaccaggac tgcgcagggc gacacgacat ggatgccgca aacacttccg tggatacgac
     1441 cgagctcgag cggcgcctgg cgcagctcga ggcggcagcg cgcggcgacg gcccgtcggc
     1501 gcagggcgct gcacagaatc cggggggcag ccacgggcaa ggcagcgacg agccctggtc
     1561 ggaggccctc gcgcgcgtcc acggagcgtc cgattacctc aagttcacgc tccagcgcat
     1621 cgctgagctc gaggcctgga accgcgagat gaccgaggtc acggcgcacc ggctcgagct
     1681 tctcgagcgc gaggcgatcg ccgccgaggt gcgagccgag gaggacgagg aagcagccca
     1741 tgaagccgag gattggctgc gccgcatcca cggcgcggtg atcgatcggc tcgggccggc
     1801 tcccggctag cggcacatcg ccgccgcttc tccacagcct cgcccgggcg ccgatttccc
     1861 gtttgacttc cgcgagcgaa tagcccgtcc tagcggcggt agcgaggatt gactccattg
     1921 gacgcgccgg taaatcaacg ccgccccgcc gaggctgcgg caccctcccc ttcctctcca
     1981 gattggacct cggatttgga caacgttctt cgactggccg ccgcccagga cagacgatcc
     2041 ggcctcgggc ccgacgggga ggaggacgcc tggatcgaga ccctcgacct tgtggtccag
     2101 gcgaccgaca ccatccgcgc ctccgaggat cgcatcgcca agctcgaggc ccgcaaccgc
     2161 gagctcgaga cgcggctcgc cgaggaggtg aagtcgctcc aggcgcgcat gcaggcgacc
     2221 gacaaggtga tcgagcgtgc cgatgcg
//
LOCUS       DASQWN010000146         2597 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1412905, whole genome shotgun sequence.
ACCESSION   DASQWN010000146 DASQWN010000000
VERSION     DASQWN010000146.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2597)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2597)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2597
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1412905"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..285
                     /locus_tag="VE686_02725"
     CDS             <1..285
                     /locus_tag="VE686_02725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009763427.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4164 family protein"
                     /protein_id="HYY83401.1"
                     /translation="DTLEDALQRLDGAVGQLEFAIARRLEGERRRGDLDTELQIMQDD
                     RARLAVELDGALARLARMEAATQDVGRRVKRAAAVVREVVARADQPGVRS"
     gene            289..663
                     /locus_tag="VE686_02730"
     CDS             289..663
                     /locus_tag="VE686_02730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015933588.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein ZapA"
                     /protein_id="HYY83402.1"
                     /translation="MPQVTVTIANRTYRMACGEGEEAHLEKLAALFDGKIEEMRGSFG
                     EIGDMRLHVMAALTLADDLGEARRRIETLEQEVAALRSIASAGDERTQAVEKRLAESV
                     GKAAERIERLARKLSTPAAASQ"
     gene            complement(813..1061)
                     /locus_tag="VE686_02735"
     CDS             complement(813..1061)
                     /locus_tag="VE686_02735"
                     /inference="COORDINATES: protein motif:HMM:NF037848.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016989 - sigma factor antagonist activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NepR family anti-sigma factor"
                     /protein_id="HYY83403.1"
                     /translation="MQLRRAVRESRVMGIGGAPATGVGRELRDEIGKRLQASYDDLID
                     EPLPATLRALVEKLQAAAPKSNKAPLKLVAKERLRKAR"
     gene            complement(1179..1439)
                     /locus_tag="VE686_02740"
     CDS             complement(1179..1439)
                     /locus_tag="VE686_02740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012335918.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY83404.1"
                     /translation="MTITLPRTLIVGIILGLAAGSAHAQTPGQPTTQQACAADVKTYC
                     GSVKPGPNNPVAACMKQNEAKLSSGCKAAIQRTQQQRSGKSL"
     gene            complement(1496..>2597)
                     /locus_tag="VE686_02745"
     CDS             complement(1496..>2597)
                     /locus_tag="VE686_02745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009763407.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="AMP-binding protein"
                     /protein_id="HYY83405.1"
                     /translation="MKNLYGIEPGEVYWASSDVGWVVGHSYIVYAPLLHGCTTVLYEG
                     KPVGTPDAGAFWRVIAEDGVAALFTAPTAFRAIKKEDPEGKLLAQYDMPSFRTLFLAG
                     ERADPDTVQWAERMLRVPVIDHWWQTETGWAIAGNPVGLGALPVKHGSPTVPMPGYDL
                     AILDEGGREAAANAMGSIAVKLPLPPSCLPTLWNADERFRESYLSAFPGYYNTSDAGF
                     LDEDGYVWVMGRTDDIINVAGHRLSTGGMEEVLSSHPGVAECAVIGIRDGLKGEVPCG
                     FVVMKSGIDRPAAEVESELVGLVREKIGPVAAFRVAITVGRLPKTRSGKILRGTMKRI
                     ADGEPWSMPATIDDPAVLDEIGAALKTRGLPG"
BASE COUNT          375 a          889 c          937 g          396 t
ORIGIN      
        1 gacacgctcg aggacgcgtt gcagaggctc gacggagccg tggggcagct cgagttcgcc
       61 atcgcgcgcc ggctcgaggg ggagcggcgc cgcggcgacc tcgatacgga actccagatc
      121 atgcaggacg accgcgcgcg gctcgccgtc gagctcgatg gggcgctcgc gcgcctcgcc
      181 cgcatggagg cggcgacgca ggacgtcggg cgccgggtca agcgcgccgc cgccgtggtg
      241 cgcgaggtcg tggcgcgcgc cgaccagccc ggcgtgagga gctgatccat gccgcaagtg
      301 acggtgacga tcgccaaccg cacctaccgc atggcctgcg gcgagggcga ggaggcgcat
      361 ctcgagaagc tcgcggcgct gttcgacggc aagatcgagg agatgcgcgg gtcgttcggc
      421 gagatcggcg acatgcgcct gcacgtcatg gcggcgctga ccctcgcgga cgacctgggc
      481 gaggcgcgcc ggcgcatcga gaccctcgag caggaggtcg cggccctgcg ctccatcgcc
      541 agcgccggcg acgagcgcac ccaggcggtc gagaagcggc tcgccgagtc ggtcgggaag
      601 gcggccgagc gcatcgagcg tctcgcccga aagctcagca cccctgccgc agcttcgcag
      661 tagcgcggga tccaagcgag ctttcggcaa cgcgggctgc cgtcattatc gcctcattat
      721 cgtcggggtt ctcgtcagag ggcccctcat catcgtcggg atttccgggc ctgctccggg
      781 cgggccggaa tcggcgatgg cggcaccgcg cgctagcgcg ccttgcgcag ccgttccttg
      841 gcgacgagct tcagcggcgc cttgttcgac ttgggggctg cggcctggag cttctcgacg
      901 agggcgcgca gcgtcgccgg gaggggttcg tcgatgaggt cgtcatagga ggcctgcagg
      961 cgcttgccga tctcgtccct gagttcgcgg ccgacgcccg tcgccggcgc gcccccgatg
     1021 cccatgaccc ggctctcacg aacggcacgg cgcagttgca cgggcggatc cttcttcacg
     1081 cccgcgatga tcgcgccgat tggtaaaggg gtcctttccg ccatccgcgg cggccgcgga
     1141 tttcggcgac ggcgaggccg cttaggagtc tcgggccgct agagcgactt gccggagcgc
     1201 tgctgctgcg tgcgctggat ggcggccttg cagccggacg agagcttggc ctcgttctgc
     1261 ttcatgcacg ccgcaacggg gttgttcggc cccggcttca ccgagccgca gtaggttttg
     1321 acgtccgccg cgcaggcctg ctgcgtggtc ggctggccgg gcgtctgcgc gtgggcggag
     1381 cctgccgcga gcccgaggat gatgccgacg atgagggtgc gcgggagagt gatcgtcatg
     1441 atgaaggtgc tccaatccgg tgcgacggaa accgccgcct ctgggaaaag ttcgctcagc
     1501 ccggcaggcc gcgggttttc agagcggcgc cgatctcgtc gaggacggcc gggtcgtcga
     1561 tggtggcggg catcgaccag ggctcgccgt cggcgatcct tttcatggtt ccgcgcagga
     1621 tcttgcccga ccgcgtcttc ggcaggcgcc cgaccgtgat ggcgacgcgg aaggccgcga
     1681 ccggaccgat cttctcgcgc accaggccga cgagctcgct ctcgacctcg gccgccgggc
     1741 ggtcgatgcc ggacttcatg accacgaagc cgcacggcac ctcgcctttc agcccgtccc
     1801 tgatcccgat caccgcacat tcggcgaccc caggatgcga ggagagcacc tcctccatgc
     1861 cgcccgtcga caggcggtgc cccgccacgt tgatgatgtc gtcggttcgc cccatcaccc
     1921 acacgtagcc gtcctcgtcg aggaagccgg cgtccgaggt gttgtaatag cccgggaagg
     1981 ccgagaggta gctctcgcgg aagcgctcgt cggcgttcca cagggtcggc aggcagctcg
     2041 gcgggagcgg cagcttcacg gcaatggagc ccatggcgtt cgccgctgcc tcgcgcccgc
     2101 cctcgtcgag gatggcgaga tcgtagccgg gcatcggcac cgtcggagag ccgtgcttca
     2161 ccggcagcgc gccaaggccc accgggttgc cggcgatggc ccagccggtc tccgtctgcc
     2221 accagtggtc gatcacgggc acgcgcagca tgcgctcggc ccactggacg gtgtcggggt
     2281 cggcgcgctc gccggccagg aacagggtgc ggaagctcgg catgtcgtac tgagccagca
     2341 gcttgccctc cggatcctcc ttcttgatgg cccggaaggc ggtcggcgcg gtgaacaggg
     2401 ccgcgacgcc gtcctcggcg atgacgcgcc agaaggcgcc cgcatccggc gtgcccacag
     2461 gcttgccctc gtacaggacc gtggtgcagc cgtgcagcag cggcgcgtag acgatgtagg
     2521 agtgcccgac gacccaaccg acgtccgacg acgcccaata cacctcgccg ggctcgatgc
     2581 cgtagaggtt cttcatg
//
LOCUS       DASQWN010000147         2003 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_805590, whole genome shotgun sequence.
ACCESSION   DASQWN010000147 DASQWN010000000
VERSION     DASQWN010000147.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2003)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2003)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2003
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_805590"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..333
                     /locus_tag="VE686_02750"
     CDS             <1..333
                     /locus_tag="VE686_02750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009493262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="EamA family transporter"
                     /protein_id="HYY83406.1"
                     /translation="GFCLATAALSLLCHLAFETTVWPASLTEWLAILALGVGPVGAAF
                     YVWDIGVKRGDIRVLGIASYAAPVLSTLILVLAGYAEPSLSLAVSCALIVLGAAVATL
                     ARRRTVTA"
     gene            complement(323..1069)
                     /locus_tag="VE686_02755"
     CDS             complement(323..1069)
                     /locus_tag="VE686_02755"
                     /inference="COORDINATES: protein motif:HMM:NF025054.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HYY83407.1"
                     /translation="MGDPSLVFSLESRLVNAWPSFETQLCDGWLLRLAKGYSKRANSA
                     TPIIAGAAVDDAVIDHLIKQFLKHGVRPTFRLTGLESPDVDAQLAARGFDSIEPTFGM
                     ITEIEIDAWEIDASVTLEETVSKRWVRETASSYGGDKADDATLMEIVSRIRQPHMFAS
                     LDLDGTNVAWGLGVAERGYVGLYDIVVSPDLRGLGLGRQIVTSLMAWGRREGATVAYL
                     QVREENEVARALYASLGFRDAYRYTHRVMR"
     gene            complement(1078..1848)
                     /gene="gloB"
                     /locus_tag="VE686_02760"
     CDS             complement(1078..1848)
                     /gene="gloB"
                     /locus_tag="VE686_02760"
                     /EC_number="3.1.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012317920.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004416 - hydroxyacylglutathione hydrolase
                     activity [Evidence IEA];
                     GO_process: GO:0019243 - methylglyoxal catabolic process
                     to D-lactate via S-lactoyl-glutathione [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxyacylglutathione hydrolase"
                     /protein_id="HYY83408.1"
                     /translation="MTAEIHAFRCLDDNIGVLVRDSATGACAAIDAPEEAAVVAALDE
                     KGWRLTEILVTHRHADHVQGIEGLKRRYGGVRVTAPDKARNEVPGADRYVGEGDRVTV
                     GSLEAEVWDTPGHCRDHIAYWFAGERALFAGDTIFTLGCGRVMESTYAQMWGSLERFA
                     HLPDDARVYSGHDYTIANARFALAVEPDNAALKARAAEADAAKAQGRFLIPSTMAAEK
                     ATNPFLRARESAVARAVKLEGAEPVAVFQALREWKNRF"
BASE COUNT          275 a          702 c          717 g          309 t
ORIGIN      
        1 ggcttctgcc tcgccaccgc ggcgctgagc ctcctgtgcc acctcgcctt cgagacgacc
       61 gtgtggccgg cgagcctgac cgaatggctc gccatcctgg cgctcggggt aggcccggtc
      121 ggcgccgcct tctacgtctg ggatatcggg gtcaagcgcg gcgacatccg cgtgctcggc
      181 atcgcctcct acgctgcccc ggtgctctcg acgctgatcc tcgtccttgc cggctacgcc
      241 gaaccgagcc tctcgctcgc cgtatcgtgc gccctcatcg tgctcggcgc cgccgtcgcg
      301 acgctggcgc ggcggcggac cgtcaccgca tgacgcggtg ggtgtagcgg taggcgtccc
      361 ggaacccgag cgaggcgtag agcgcccgcg ccacctcgtt ctcctcccgc acctgcaggt
      421 acgccaccgt cgcgccttcg cggcgacccc aggccatgag gctcgtcacg atctgccgtc
      481 cgaggccgag cccgcgcagg tccggcgaca cgacgatgtc gtagaggccg acataacccc
      541 gctcggcaac gccgaggccc caggcgacgt tggtgccgtc gaggtcgagg gaggcgaaca
      601 tgtgcggctg gcggatgcgc gacacgatct ccatgagggt cgcgtcgtca gccttgtcgc
      661 cgccgtagga gctcgccgtc tcgcgcaccc agcgcttgct gacggtctcc tcgagggtga
      721 cggaggcgtc gatctcccag gcgtcgatct cgatctcggt gatcatgccg aaggtcggct
      781 cgatgctgtc gaagccgcgc gccgcgagct gcgcgtcgac gtccgggctc tcgagcccgg
      841 tgaggcggaa cgtcggccgc acgccgtgct tcaggaactg cttgatcaga tgatcgatga
      901 ctgcgtcgtc gacggcggcg ccggcgatga tcggcgtcgc cgagttggcg cgcttcgaat
      961 agccctttgc gaggcgcagg agccagccgt cgcagagctg cgtctcgaag gacggccagg
     1021 cgttcaccaa ccggctctcg agggagaaga cgagggacgg atcgcccatg gcggagctca
     1081 gaaccggttc ttccactcgc gcaaggcctg gaacacggca acgggctcgg ccccctccag
     1141 cttcaccgcc cgcgcgacgg cggactcgcg ggcgcgcagg aaggggttcg tggccttctc
     1201 ggccgccatg gtcgaaggaa tgaggaaccg tccctgcgcc ttggcggcgt cggcctcggc
     1261 ggcacgggcc ttgagggcgg cgttgtcggg ctcgaccgcc agggcgaagc gcgcgttcgc
     1321 gatggtgtag tcgtggccgc tgtagacgcg cgcgtcgtcg ggcaggtgcg cgaagcgctc
     1381 gagcgagccc cacatctgcg cgtaggtgct ttccatgacg cggccgcagc cgagggtgaa
     1441 gatggtgtcg ccggcaaaca gcgcccgctc gcccgcgaac caataggcga tgtggtcgcg
     1501 gcagtggccc ggcgtgtccc agacctcggc ctcgaggctg ccgacggtca cccggtcgcc
     1561 ctcgccaacg tagcgatcgg cgcccggaac ctcgttgcgc gccttgtcgg gggccgtgac
     1621 ccgcacccca ccgtagcggc gcttgagccc ctcgatcccc tgcacatggt cggcgtggcg
     1681 gtgcgtcacg aggatctcgg tgagccgcca gcccttctcg tcgagggcgg cgacgacggc
     1741 cgcctcctcg ggcgcgtcga tggccgcgca ggcccccgtg gcggagtcgc ggacgaggac
     1801 gccgatgttg tcgtcgaggc agcggaaagc gtggatctcg gccgtcatgg gggcacccga
     1861 aaagaaggcg ctccgcctag cacgctgggc cgccggcgca aacggggggc gcgatgcttg
     1921 cgcttcggcg ggcaggcccg cattgatggc ggcgcaacgc gtgtccggca tccatgagcg
     1981 tcgacgtcgt cgatctgcgc gcc
//
LOCUS       DASQWN010000148         5398 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_618150, whole genome shotgun sequence.
ACCESSION   DASQWN010000148 DASQWN010000000
VERSION     DASQWN010000148.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 5398)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5398)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5398
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_618150"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            146..760
                     /locus_tag="VE686_02765"
     CDS             146..760
                     /locus_tag="VE686_02765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008967823.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HupE/UreJ family protein"
                     /protein_id="HYY83409.1"
                     /translation="MRSRLVAVAGAALLGLVATPAFAHHVMDGRLPATFADGLLSGLG
                     HPVIGLDHLAFVIAAGLAVGLAGASLATPALLVGASIAGVLVHVAAVGLPGGELLVAA
                     SVVAAGVIIASGKAAPGLAWALLFALGGFVHGYAFGESIVGADRSALGGYLTGLALVQ
                     AALATGIALAARASLIAGAALAPRAAGAVIAAVGVFFGAAQVLA"
     gene            830..1558
                     /locus_tag="VE686_02770"
     CDS             830..1558
                     /locus_tag="VE686_02770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009494120.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0017004 - cytochrome complex assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c biogenesis protein CcdA"
                     /protein_id="HYY83410.1"
                     /translation="MLEVSIPAAVLGGLISFLSPCVLPLVPPYLSYLAGTTLDELQAG
                     DDWAVRRRALLTALLFVAGFSTVFVLLGATASVLGQALRQHLELLSTVAGVVIIVMGL
                     HLLGLFRIGLLYREARVEVGRSASVWGAYLMGLAFAFGWTPCIGPILAAILALAGSET
                     SVARGALLLGAYSAGLGIPFVLAALAMKPFVAFLKRVRSRFGMIEKAMGAFLVLTGIA
                     FLFGWITSASFWLLEAFPVLGRFG"
     gene            complement(1623..2762)
                     /locus_tag="VE686_02775"
     CDS             complement(1623..2762)
                     /locus_tag="VE686_02775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009494117.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015658 - branched-chain amino acid
                     transmembrane transporter activity [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0015803 - branched-chain amino acid
                     transport [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid ABC transporter
                     substrate-binding protein"
                     /protein_id="HYY83411.1"
                     /translation="MKRMLLSAVALGFGLAFAGAASAQIKVGVAGPITGPNAAFGAQL
                     KNGAEQAVEDINAAGGVLGQKLQLSVGDDVSDPKQGVSVANKLAGEGVKWLVGHFNSG
                     VSIPASEVYSESGIVQITPASTNEKFTDRATTNPNLLVFRTCGRDDQQGAVAGNYLAK
                     NFKDKKIAVVHDKTPYGKGLADNTKATINKANIKEVVYEGVNTGEKDYSALVSKLKQA
                     NVDVVYFGGLHTEAGLIIRQMRDQGLKAPLMSGDGIVSSEFTSIAGPGAEGTLMTFGP
                     DARRNPNAKDVVEKFRKKGYEPEAYTLYSYAAVQILAQAAEAVKSPDGKKIAEYMRSG
                     KTFKTVIGDIAYDKKGDITRPDYVMYVWKKAADGKIDYTGNEVGM"
     gene            complement(2887..3243)
                     /locus_tag="VE686_02780"
     CDS             complement(2887..3243)
                     /locus_tag="VE686_02780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012335133.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY83412.1"
                     /translation="MQGILYEEPSVWLFLLVTCVMGGWAAWMTGRALALTWRPYWQCI
                     AAAVVLAWAVRFIHFALFEGSFASLRYWIVDFVVVVVVTSLGYRTTRARQMTTQYSWL
                     YERAGPLTWRERRPSA"
     gene            complement(3247..4029)
                     /locus_tag="VE686_02785"
     CDS             complement(3247..4029)
                     /locus_tag="VE686_02785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018044026.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HYY83413.1"
                     /translation="MSVAGINVLVDETRAIQDAKGQPLLSVRGVKTYYGNIIALKGVD
                     LDVFEGEIVALIGANGAGKSTLMMTIFGDPRAREGRITYAGRDITRMATHEIARLAVA
                     QSPEGRRIFPRMSVYENLQMGASVRGLEHFAEDLERVFGIFPRLKERLHQRGGTLSGG
                     EQQMLAIARALMSRPRLLLLDEPSLGLAPLVVKQIFDVIRELNERDGMTVFLVEQNAY
                     HALRLAHRGYVMVTGTITMSGTGKELLADPQVRSAYLEGGRS"
     gene            complement(4049..4891)
                     /locus_tag="VE686_02790"
     CDS             complement(4049..4891)
                     /locus_tag="VE686_02790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009494114.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HYY83414.1"
                     /translation="MRWVQDPVLAVEHLTMRFGGLVAIDDLSFQAGRGDVTALIGPNG
                     AGKTTVFNCITGFYKPTEGMMTLRRPDGAEFLLERLPGHSINWRAKVARTFQNIRLFT
                     GMTVLENLLVAQHNPLMISSGFTFLGVLGVGGYRAAEQAAVEKATFWLDKVRLMERAD
                     DPAGDLPYGDQRRLEIARAMCTDPVLLCLDEPAAGLNPRESHDLNQLLLSIRDEIGTS
                     ILLIEHDMSVVMEISDHVVVLDYGIKIADGTPGEIRNDASVIAAYLGVEDEEVAAVEA
                     EVGA"
     gene            complement(4891..>5398)
                     /locus_tag="VE686_02795"
     CDS             complement(4891..>5398)
                     /locus_tag="VE686_02795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012319218.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="branched-chain amino acid ABC transporter
                     permease"
                     /protein_id="HYY83415.1"
                     /translation="FVTMRLRKLPVGRAWEALREDEIACRSLGINTTNTKLTAFAIGA
                     MFGGFAGSFFATRQGFISPESFNFLESATILAIVVLGGMGSQFGVAIAAVVIVGGPEL
                     LRNLGFLTAVFGPGFDPNEYRFLLFGLGMVAMMVWRPRGLISLREPSIVLKERRAISG
                     SLVKEGHG"
BASE COUNT          760 a         1816 c         1863 g          959 t
ORIGIN      
        1 gcggcgctcc cgcggggctt tttcgttgcg gcgcggacgc cgccgccttc gtcgtccagg
       61 agggttgtcc gccggagctt gacagtgggg ccctgagaga caccatgccc gcgttcggcc
      121 gcagggccgg tcggggaggg cggtcatgag gtctcgtttg gttgccgtgg cgggtgcggc
      181 cctcctcggg ctcgtcgcga cgccggcctt cgcgcaccac gtcatggatg ggcgcctgcc
      241 tgcgaccttc gcggacggat tgctgtccgg tctgggccac ccggtcatcg gtctcgatca
      301 tctggccttc gtcatcgcgg caggcctcgc ggtcggcctc gccggcgcga gcctcgcgac
      361 gccggccctg ctcgtcggcg cgtcgatcgc gggtgtgctc gtgcatgtcg ccgccgtcgg
      421 cctgcccggc ggcgagctcc tggtggccgc atccgtcgtc gccgccggcg tcatcatcgc
      481 ctccggcaag gccgctcccg ggctggcatg ggcgctgctc ttcgccctag gcggcttcgt
      541 acacggctac gcctttggcg aatcgatcgt cggcgcggac cggtccgccc tgggcggtta
      601 cctgaccggc cttgcgctgg tgcaagccgc tctcgccacc ggcatcgcac tcgcggcacg
      661 cgcaagcctg atcgccggtg ccgcgctggc cccccgggcg gcaggggccg tcattgcagc
      721 agtcggcgtc ttcttcggcg ccgcacaggt gctcgcctaa ggttcacatc gccggtaggc
      781 gttccgcgcc ggccttccgc acgggggacg gcaccgctac aagacctcga tgctcgaggt
      841 ctccatcccg gccgccgtgc tcggggggct catcagcttc ctgagcccct gcgtcctgcc
      901 gctggtgccg ccctacctgt cgtacctcgc cggcaccacg ctcgacgagc tgcaggccgg
      961 ggacgattgg gccgtgcgcc ggcgcgcgct cctcacggcg ctgcttttcg tcgccggatt
     1021 ctcgaccgtg ttcgtgctcc tgggagcgac cgcgtccgtt ctgggccagg cgctccggca
     1081 gcatctcgag ctgctgagca cggtcgccgg cgtcgtcatc atcgtcatgg gcctgcacct
     1141 cctcggtctc ttccgcatcg ggctgctcta tcgcgaggcg cgggtcgagg tcggccgctc
     1201 ggcgagcgtg tggggcgcct acctcatggg gctcgccttt gcgttcggct ggacgccgtg
     1261 catcgggccg atcctggccg ccatcctggc gcttgccggc tcggaaacga gcgtggcgcg
     1321 gggcgccctc ctgctcgggg cttactcggc cggactcggc atcccgttcg tgctcgccgc
     1381 gctggcgatg aaacccttcg tcgccttcct caagcgcgtc cggtcgcgct tcggcatgat
     1441 cgagaaggcc atgggagcgt tcctggtgct tacggggatc gccttcctct tcggctggat
     1501 caccagcgcc tcgttctggc tgctcgaggc cttccctgtg cttggccgtt tcggctgacg
     1561 cccacgaaaa agcccgcccc ggcggccggg gcgggcttga gccgtaaacg gaagggctcg
     1621 gcttacatgc cgacttcgtt gccggtgtag tcgatcttgc cgtcggcggc ctttttccag
     1681 acgtacatga catagtcggg ccgggtgatg tcgcccttct tgtcataggc gatgtcgccg
     1741 atgaccgtct tgaaggtctt acccgagcgc atgtactcgg cgatcttctt gccgtccggc
     1801 gacttcacgg cctcggccgc ctgggcgagg atctgcacgg ccgcatagct gtacagcgtg
     1861 taggcctccg gctcgtagcc cttcttgcgg aacttctcga cgacgtcctt ggcgttcggg
     1921 ttgcggcgtg cgtcgggccc gaaggtcatg agcgtgccct ccgccccggg accggcgatc
     1981 gaggtgaact cgctcgagac gatgccgtcg cccgacatga gcggagcctt gagaccctgg
     2041 tcacgcatct ggcggatgat gagccccgcc tcggtgtgca gcccgccgaa gtagacgacg
     2101 tccacgttcg cctgcttcag cttcgacacg agcgcggaat agtccttctc gccggtgttg
     2161 acgccctcgt agacgacttc cttgatgttg gccttgttga tcgtcgcctt ggtgttgtcg
     2221 gcgaggccct tgccgtaggg cgtcttgtcg tgcacgaccg cgatcttctt gtccttgaag
     2281 ttcttggcga ggtagttgcc ggcgaccgcg ccctgctggt cgtcgcggcc gcaggtgcgg
     2341 aagacgagga ggttcgggtt tgtcgtcgct cggtcggtga acttctcgtt cgtcgaggcc
     2401 ggggtgatct gcacgatgcc ggattcggag tagacttccg aggccgggat cgagacgccg
     2461 gagttgaagt ggccgacgag ccatttcacg ccttcgccgg cgagcttgtt ggcgaccgag
     2521 acgccctgct ttggatcgga gacgtcgtcg ccgaccgaga gctgcagctt ctgcccgagg
     2581 acgccgccag cggcgttgat gtcctcgacg gcctgctcgg ccccgttctt caactgcgcg
     2641 ccgaaggccg cgttcggacc ggtgatcggg ccggcgacgc cgaccttgat ctgcgcgctg
     2701 gcggcgcccg cgaacgcaag gccgaagccg agcgcgacgg cggacaacag cattctcttc
     2761 atgcggtctc tcctctggat tcccggtgtg gaggcgcttg cgcctctggg cgggtgaacc
     2821 cgcctcaacc ggcagtcttg cgccttttgc gcctcaagtc atccggcaaa atcaggcgct
     2881 gaagtgctac gcggacggcc gccgttcgcg ccacgtcagt gggccggcgc gctcgtaaag
     2941 ccagctgtac tgggtcgtca tctgtcgcgc gcgcgttgtc cggtagccga gtgaggtgac
     3001 gacgaccacc acgacgaagt cgacgatcca gtagcgcagg gaggcgaacg agccctcgaa
     3061 gagcgcgaaa tggatgaaac gcaccgccca ggcgagaacc accgcggcgg cgatgcactg
     3121 ccagtacgga cgccacgtca gcgccagcgc ccggcccgtc atccacgccg cccagccgcc
     3181 catgacgcag gtgacgagga gaaagagcca gactgacggc tcctcgtaga ggatgccctg
     3241 catggcctag ctccggccgc cttcgaggta cgccgagcgc acctgcggat cggcgaggag
     3301 ctccttgccg gtgccgctca tggtgatcgt ccccgtgacc atgacgtagc cgcggtgggc
     3361 gaggcggagc gcgtggtagg cgttctgctc gacgagaaac accgtcattc cgtcgcgctc
     3421 gttgagctcg cggatgacgt cgaagatctg cttgacgacg agcggggcga ggccgagcga
     3481 gggctcgtcg agcaggagca ggcgcgggcg gctcatcagg gcgcgtgcga tggcgagcat
     3541 ctgctgctcg ccgcccgaga gggttccgcc gcgctgatgc aggcgctcct tcaggcgcgg
     3601 gaagatgccg aaaacgcgct cgaggtcctc cgcaaagtgc tcgaggcccc gcacggaggc
     3661 tcccatctgg aggttctcgt acacgctcat gcgcgggaag atgcgccggc cctccggcga
     3721 ctgcgccacc gcgagccgcg cgatctcgtg ggtcgccatc cgggtgatgt cccggccggc
     3781 ataggtgatc cggccttccc gggcgcgcgg gtcgccgaag atcgtcatca tgagcgtcga
     3841 cttgccggcg ccgttggcgc cgatcagcgc cacgatctcg ccctcgaaga cgtcgaggtc
     3901 gacgcctttg agggcaatga tgttcccgta gtacgtcttg acgccccgca ccgagaggag
     3961 cggctgcccc ttcgcatcct ggatcgcccg cgtctcgtca acgagcacgt tgatgccggc
     4021 aacgctcatc ggaggtccac cgcttcgctc atgcgccgac ctcggcctcg acggcggcga
     4081 cttcctcgtc ctcgacgccg aggtaggcgg cgatgacgct cgcgtcgttg cggatctcgc
     4141 ccggcgtgcc gtccgcgatc ttgatgccgt agtcgagcac aacgacgtgg tcggaaattt
     4201 ccatcaccac ggacatgtcg tgctcgatga gcaggatcga ggtgccgatc tcgtcgcgga
     4261 tggacaggag cagctggttg aggtcgtggc tctcgcgcgg gttcaggccc gccgccggtt
     4321 cgtcaaggca gagcaggacg ggatcggtgc acatggcccg cgcgatctcg agccggcgct
     4381 gatcgccata aggcaggtcg cccgcgggat catcggcccg ctccatcagg cgaaccttgt
     4441 cgagccagaa cgtcgccttc tcgacggcgg cctgctcggc cgcccgatac ccgccgacgc
     4501 cgagcacgcc gaggaacgtg aaccccgacg agatcatcaa ggggttgtgc tgcgcgacga
     4561 gcaggttctc gagcaccgtc atgccggtga acaggcggat gttctggaag gtgcgcgcga
     4621 ccttggcgcg ccagttgatg ctgtgtcccg gcagccgttc gagcaggaac tcggcgccgt
     4681 ccggccgccg cagggtcatc atgccctcgg tcggcttgta gaagccggtg atgcagttga
     4741 acacggtggt cttgccggcg ccgttcgggc cgatgagcgc ggtcacatcg ccgcgtccgg
     4801 cctggaacga caggtcgtcg atggcgacga gcccgccgaa gcgcatggtc agatgctcga
     4861 cggcgagcac cgggtcctga acccagcgca tcagccgtgc ccttccttga cgagggaccc
     4921 ggaaatcgcg cgccgctcct tcaggacgat ggacggctcg cgcagcgaga tgaggccgcg
     4981 gggccgccac accatcatcg ccaccatgcc gaggccgaag agcaggaagc ggtactcgtt
     5041 cgggtcgaag cctgggccaa agacggcggt caggaagccc aggttgcgca ggagctccgg
     5101 gccgccgacg atgacgacgg ctgcgatcgc aacgccgaac tgcgagccca tgccgccgag
     5161 cacgacgatg gcgaggatgg tcgcggattc gaggaagttg aagctttcgg gcgagatgaa
     5221 gccctggcgg gtggcgaaga acgagcccgc gaagccgccg aacatggcgc cgatcgcgaa
     5281 cgcggtgagc ttcgtgttcg tcgtgttgat gccgagcgag cggcaggcga tctcgtcctc
     5341 gcgcagggct tcccaggcac gccccacggg cagcttgcgc aggcgcatgg tgacgaag
//
LOCUS       DASQWN010000149         2702 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_309434, whole genome shotgun sequence.
ACCESSION   DASQWN010000149 DASQWN010000000
VERSION     DASQWN010000149.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2702)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2702)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2702
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_309434"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..364)
                     /locus_tag="VE686_02800"
     CDS             complement(<1..364)
                     /locus_tag="VE686_02800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002712979.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MoxR family ATPase"
                     /protein_id="HYY83416.1"
                     /translation="MRFTGTEAYVATEDLKVAVNAAIVLERPLLVKGEPGTGKTVLAE
                     EIAKGVGAPLLTWHIKSTTKAQQGLYEYDAVSRLRDSQLGDPRVSDIRNYIKRGKLWD
                     AFAAEQRPVLLIDEIDKAD"
     gene            528..1133
                     /locus_tag="VE686_02805"
     CDS             528..1133
                     /locus_tag="VE686_02805"
                     /EC_number="3.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016845938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="isochorismatase family cysteine hydrolase"
                     /protein_id="HYY83417.1"
                     /translation="MGELKGGPLNSRTVHLCVDMQRIFSTEGPWPTPWMERVLPTVTR
                     IAERFPERTVFTRFITPETPEQATGMWRHYYERWRQTTREHLDPRLLDLMPPLARLAP
                     PAPVFDKPVYSAFAGHRLHDHLQERGTDALVITGSETDVCVLATVLGAVDHGYRVIIV
                     TDAVCSSSDEGHDSLLKLYHERYSQQIETADSETILSLWNS"
     gene            1196..2485
                     /locus_tag="VE686_02810"
     CDS             1196..2485
                     /locus_tag="VE686_02810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009489469.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0019346 - transsulfuration [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cystathionine gamma-synthase family protein"
                     /protein_id="HYY83418.1"
                     /translation="MSDDGYHKDRLGNRKLHPETLMLGYGYDPALSEGAVKPPVFLTS
                     TFVFTSAEHGKEFFDYVAGRREPPQGEAAGLVYSRFNHPNSEIVEDRLAIFEDAEAAV
                     LFSSGMSAIATTVLAFARPGDVILHSQPLYGGTETLVAKTLANLGMGSVGFGDGVDAD
                     AVRSAAEEARAKGRVSVVVIETPSNPMNSLVDIALARRVADEIAAAQGGEPPVVICDN
                     TLLGPLYQHPLRHGADVSLYSLTKYVGGHSDLIAGAALGSKELMKRIRLLRSAIGTQL
                     DPHSCWMLGRSLETLTLRMSAANRNGEIVADFLQKHPGVTKVHHLAYLAEGSPERRVY
                     DTQCDAPGSTFSFDVAGGEAEAFRVLNALKIFKLAVSLGGTESLTCHPASTTHSGVPK
                     ATRDRLGVSDATIRVSIGIEHPDDLVADLAQALDKLS"
BASE COUNT          431 a          948 c          885 g          438 t
ORIGIN      
        1 tgtcggcctt gtcgatctcg tcgatgagga gcaccggccg ctgctcggcc gcaaacgcgt
       61 cccacagctt gccgcgcttg atgtagttgc ggatgtccga cacgcgcgga tcgccgagct
      121 ggctgtcccg caggcgcgag actgcgtcgt actcgtaaag accctgctgg gccttggtgg
      181 tcgacttgat gtgccacgtc agcagcggcg cgccgactcc cttggcgatc tcctccgcca
      241 acaccgtctt cccggtgccg ggctcgcctt tcaccaggag cggccgctcg agcacgatgg
      301 cggcgttgac ggcgaccttc agatcctcgg tcgcgacgta agcttcggtc ccggtgaaac
      361 gcatgcggct caggtcctct cggaagaggg cgcaacatag ggaggcaacc gcagaggggc
      421 aatccgggga ggctccgcga tgcgaaggtc tgaaccgtat cccgatgtgg cagttggtca
      481 tcgcgcggcg gcatgaccgg gcgcccgagg cagcgtgagg aagtgggatg ggcgaactca
      541 agggaggacc gctgaactcg cggacagtgc atctgtgcgt cgacatgcag cgcatcttct
      601 ccacggaggg tccgtggccg acgccgtgga tggaacgggt gctgccgacc gtcacgcgga
      661 tcgccgagcg ctttccggag cggaccgtct ttacgcgctt catcacaccc gagacccccg
      721 agcaggcgac gggcatgtgg cggcactatt acgagcgctg gcgccagacc acgcgggaac
      781 acctcgatcc gcggcttctc gatctcatgc cgccgctcgc ccgcctcgcg ccgcccgcgc
      841 ccgtgttcga caagccggtc tattcggcct tcgcgggcca ccggctgcac gaccacctgc
      901 aggagcgagg caccgacgcg ctcgtcatca cgggctcgga gacggacgtg tgcgtgctcg
      961 cgacggtgct cggggccgtc gaccacggtt accgcgttat cattgtcacg gacgcggtgt
     1021 gcagttcctc cgacgagggg cacgactcgc tgctcaagct ctatcatgag cgctacagcc
     1081 agcagatcga gaccgccgac agcgagacca tcctgtccct ctggaattcc tgacggcgcc
     1141 ttgtttcggt cgcgccgata ggatcgattg cgtccacgag cgagaggaac cgcgcatgtc
     1201 cgacgacggc taccacaagg accggctcgg gaaccggaag cttcaccccg agacgctgat
     1261 gctcggctac ggctacgacc cggcgctatc ggaaggcgcc gtgaagccgc cggttttcct
     1321 cacatcgacc ttcgtcttca cctcggccga gcacggcaag gaattcttcg actacgtggc
     1381 cggccggcgc gagccgccgc agggtgaggc cgcggggctc gtctactcgc gcttcaacca
     1441 ccccaacagc gagatcgtcg aggaccggct cgccatcttc gaggacgcgg aagccgccgt
     1501 gctgttctcc tcgggcatgt cggccatcgc cacgacggtc ctcgccttcg cgcggcccgg
     1561 cgacgtcatc ctgcactcgc agccgctcta cggcggcacc gagaccctgg tggcgaagac
     1621 gctggcgaac ctcggcatgg gctcggtcgg cttcggcgac ggggtcgacg cggacgcggt
     1681 gcgcagcgcc gcggaggagg cgcgggctaa gggccgcgtc tccgtcgtcg tcatcgagac
     1741 cccgtcgaat cccatgaact ctctggtaga catcgcgctg gcccgccgcg tcgccgatga
     1801 gattgcggcc gcgcagggcg gcgagccgcc ggtggtcatc tgcgacaaca ctctgctcgg
     1861 gccactctac cagcaccctc tgcgccacgg cgccgacgtc tcgctctact cgctgacgaa
     1921 gtacgtcggc ggccactccg acctcatcgc cggcgcggcg ctgggctcga aggagttgat
     1981 gaagcgcatc cgcctcctgc gctcggccat cggcacgcaa ctcgatccgc actcgtgctg
     2041 gatgctcggg cgctccctcg agacactgac cctgcgcatg agcgcggcga accgcaacgg
     2101 cgagatcgtc gccgacttcc tccagaagca cccgggagtc acgaaggtgc accacctcgc
     2161 ctacctcgcc gagggctcgc cggaacgccg ggtctacgac acgcaatgcg atgcgccggg
     2221 ttcgacgttc tcgttcgacg tcgcaggtgg cgaggcggag gccttccggg tgctgaacgc
     2281 gctcaagatc ttcaagctcg ccgtgagcct ggggggcacc gagtcgctca cctgccaccc
     2341 ggcatctacg acccactcgg gcgtgcccaa ggcaacccgc gaccgcctcg gcgtctccga
     2401 tgcgacgatc cgcgtgtcga tcggcatcga gcaccccgac gacctcgtcg ccgaccttgc
     2461 gcaggcgctc gacaagctgt cgtagcctcc acggacttcc tcccaagcgg gtgcgggagc
     2521 cccggtttcg acgccgcaac cgcggccgcg ccccggtttg ggcgcgcgcc gaggctgttc
     2581 gtcgcgggag agatcctggc gccttgtccc ggcggcatcg ggcttgcatt gtcggcgcct
     2641 cacataagga atcggcatgg ccgccgcgat cgcgccggaa tcgtacaaag aagtcatgct
     2701 gt
//
LOCUS       DASQWN010000150         2527 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_618756, whole genome shotgun sequence.
ACCESSION   DASQWN010000150 DASQWN010000000
VERSION     DASQWN010000150.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2527)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2527)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2527
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_618756"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..692
                     /gene="argB"
                     /locus_tag="VE686_02815"
     CDS             <1..692
                     /gene="argB"
                     /locus_tag="VE686_02815"
                     /EC_number="2.7.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020095286.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003991 - acetylglutamate kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006592 - ornithine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="acetylglutamate kinase"
                     /protein_id="HYY83419.1"
                     /translation="PQIGEMLKRLGIQSEFQAGLRVTDEATVEVVEMVLAGLINKQIV
                     GWIGAEGGKALGLSGKDGNMVVARKATRSVVDPDSNLEIPVDLGFVGEPEKVDRSVLD
                     AVLKAELIPVLAPIAMGPESETYNVNADTFAGAIAGAMGAKRLLLLTDVAGVLTKDKE
                     LIPELTVEECRKLIADGTITDGMIPKIETCIYAIEQGVEAVVILDGKVPHAVLLELFT
                     DHGAGTLIRRG"
     gene            829..1551
                     /locus_tag="VE686_02820"
     CDS             829..1551
                     /locus_tag="VE686_02820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018262582.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyrimidine 5'-nucleotidase"
                     /protein_id="HYY83420.1"
                     /translation="MNDIAPSAHVSAAQSRGFAHVHTWIFDLDNTLYPHEARVWPQVD
                     ERITLYIMQLFGLDGLSARGLQKYFYHRYGTTLRGLIEEYGINPYDFLDFAHDIDHSE
                     IALDESLGRAIERLPGRKLILTNGSRKHAENVARKIGILDHFEDVFDIAAADFVPKPD
                     RRAYERFLELHDVEPSRAAMFEDIAKNLVVPHDIGMTTTLVIPRTIDPFRETFEQEAV
                     KAPHIDHITNDLAGFLSEQVGG"
     gene            1548..2213
                     /locus_tag="VE686_02825"
     CDS             1548..2213
                     /locus_tag="VE686_02825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012330533.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY83421.1"
                     /translation="MSEARAEAGPSGRRLALLPLDAVGRAYKRTIWIIALGILAFGAL
                     QCAWALSIGSRQLLKDGLDWGYDVALYGIAAFVFGRGANVERLSAMAIAAILAVAGLH
                     TLYDLWDKVVTPRPIEILTIGFSAASAIVIAYLVVGALWRFRGHANPLIRATWLSSRN
                     DAISTTLFALLVMATRVAPVRWPEYALDVATAAISFQATYAIVQAERRDRRSSSPRDG
                     GED"
     gene            complement(2223..>2527)
                     /locus_tag="VE686_02830"
     CDS             complement(2223..>2527)
                     /locus_tag="VE686_02830"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY83422.1"
                     /translation="PRMERRTFLLGLVGGLAVAAGLAATGSTPAEALPLKAPPAPVPG
                     GADEAADIKPEDLDGVRTEDAQYYYYRRRRWRPRYRYYYRPRRRYWRRRYWRRRYW"
BASE COUNT          395 a          901 c          830 g          401 t
ORIGIN      
        1 gcccgcagat cggcgagatg ctgaagcgcc ttggcattca gtccgagttc caggcgggct
       61 tgcgcgtcac cgacgaggcg accgtcgagg tcgtcgagat ggttctggcc gggctcatca
      121 acaagcagat cgtcggctgg atcggggccg agggcggcaa ggcgctcggc ctctcgggca
      181 aggacggcaa catggtggtc gcccgcaagg ccacgcgcag cgtcgtcgat ccggactcga
      241 acctcgagat tcctgtcgac ctcggcttcg tgggcgagcc cgagaaggtc gaccgttcgg
      301 tgctcgacgc agtgctcaag gccgagctga tcccggtcct ggcgccgatc gccatgggac
      361 cggagagcga gacctacaac gtcaacgccg atacgtttgc gggcgccatt gcgggcgcca
      421 tgggggcgaa gcgcctcctc ctcctcaccg acgtcgccgg cgtgctgacc aaggacaagg
      481 agctcatccc cgagctcacg gtcgaggaat gccgcaagct catcgccgac ggcaccatca
      541 cggacggcat gatccccaag atcgagacct gcatctacgc catcgagcag ggcgtcgagg
      601 ccgtggtcat cctcgacggc aaggtcccgc acgcggtgct cctcgagctc ttcaccgacc
      661 acggcgcggg tacgctgatc cggagggggt agcgccgccc acctctcccg ccggcggcag
      721 aggtcgaatc cgcgaaccgg accgggtgag ggccgcggcc ttttaacctt tccgcactcc
      781 ccctatgtca tggtggaggg gccgcttcgg ccccgttttc gtctgttcat gaacgatatt
      841 gccccgtccg cccatgtctc cgccgcgcaa tcgcgcggct tcgcgcacgt ccacacctgg
      901 atcttcgatc tcgacaacac gctctatccg cacgaggcgc gggtatggcc gcaggtcgac
      961 gagcgcatca cgctctacat catgcagctg ttcggcctcg acggcctgtc ggcgcggggg
     1021 ctgcagaagt acttctatca ccgctacggc acgaccctgc gcgggctcat cgaggagtac
     1081 ggcatcaacc cctacgactt cctcgacttc gcgcacgaca tcgaccactc ggagatcgcc
     1141 cttgacgagt cactcgggcg cgccatcgag cgtctgcccg ggcgcaagct catcctcacc
     1201 aacggctcgc gcaagcacgc cgagaacgtg gcccgcaaga tcggcattct cgaccacttc
     1261 gaggacgtgt tcgacatcgc tgccgccgac ttcgtgccga agcccgaccg gcgcgcctat
     1321 gagcgcttcc tcgagctgca cgacgtcgag ccgtcgcggg ccgccatgtt cgaggacatc
     1381 gccaagaacc ttgtcgtgcc gcacgacatc ggcatgacga cgacgctggt gatccccagg
     1441 accatcgacc cgttccgcga gaccttcgag caggaggccg tcaaggcgcc ccacatcgac
     1501 cacatcacga acgacctcgc cgggttcctc tccgagcagg tcggggggtg agcgaggctc
     1561 gggccgaggc cgggccgtca gggcgccggc tcgcgctgct gcccctcgat gccgttggcc
     1621 gcgcctacaa gcgcaccatc tggatcatcg ctctcggaat cctggcgttc ggcgcgctgc
     1681 agtgcgcctg ggccctgtcg atcggctcgc gccagctcct caaggacggg ctcgactggg
     1741 gctacgacgt ggcgctgtac ggcatcgccg ccttcgtgtt cggccgcggc gcgaacgtgg
     1801 agcgcctgtc ggcgatggcc atcgccgcga tcctcgcggt cgcggggctg cacacgctgt
     1861 acgatctctg ggacaaggtg gtcacgccgc gccccatcga gatcctgacc atcggcttct
     1921 cggcggccag cgcgatcgtg atcgcctatc tggtggtggg cgccctctgg cgctttcgcg
     1981 gccacgccaa cccgctcatc cgcgcgacgt ggctgtcgag ccgcaacgac gccatctcga
     2041 cgacgctgtt cgcgctcctc gtcatggcga cacgggtcgc gccggtgcgc tggcccgaat
     2101 acgccctcga cgtcgcgacg gccgcgatca gcttccaggc gacctacgcc atcgtccagg
     2161 ccgaacggcg cgaccggcgg tcgtcctctc cccgcgacgg gggagaggac taggcggccg
     2221 gcctaccagt accggcgacg ccagtagcgc cggcgccaat agcggcggcg cgggcggtag
     2281 tagtagcggt accgcggccg ccagcggcgg cgccggtagt agtaatattg cgcgtcctcg
     2341 gtccgcacgc cgtcgaggtc ctccggcttg atgtcggcgg cctcgtcggc tccgccggga
     2401 accggcgcgg ggggcgcctt gagcggcagc gcctcggccg gggtcgagcc ggtcgccgca
     2461 agaccggcgg caaccgcgag ccctccgacg agcccgagaa ggaatgtacg cctttccatc
     2521 cgtggtt
//
LOCUS       DASQWN010000151         2731 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_507776, whole genome shotgun sequence.
ACCESSION   DASQWN010000151 DASQWN010000000
VERSION     DASQWN010000151.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2731)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2731)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2731
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_507776"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1126)
                     /locus_tag="VE686_02835"
     CDS             complement(<1..1126)
                     /locus_tag="VE686_02835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015930965.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate aminotransferase family protein"
                     /protein_id="HYY83423.1"
                     /translation="MSSAQGLQAANDRQSPNDLESWWLPFTANRSFKQRPRMITRAKG
                     MYYYTPEGRAVLDGSAGLWCCNAGHNRDEIVSAIQTAAEELDFAPAFQYGHPKPFALA
                     SRLASLAPGDLDHVFFCNSGSEAADTALKIAIAYWNVSGQGQRQRLIGRERGYHGVGF
                     GGISVGGIVNNRKFFGSLLAGVDHLPHTYNRAEQAFSRGEPESGAHLADDLERIVTLH
                     DASTIAAVVVEPMAGSTGVLPPPKGYLQRLRQICDRHGILLIFDEVITGFGRLGFAFA
                     AERYGVIPDMITFAKGVNSGTVPMGGVIVRKGIHDAFMKGPDHVIELFHGYTYSAHPL
                     ACAAGLATLDVYAEEGLLTRGAAMEAAFGDAMHSLAARPHV"
     gene            complement(1197..1418)
                     /locus_tag="VE686_02840"
     CDS             complement(1197..1418)
                     /locus_tag="VE686_02840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017482661.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="heavy metal-associated domain-containing
                     protein"
                     /protein_id="HYY83424.1"
                     /translation="MSEPRKELLMQIDNMRSERCAQAVRDALRRLDSEAEVSVDLAHQ
                     RVAITTRAEALVVAEALTAAGYEARAMTL"
     gene            1536..2426
                     /locus_tag="VE686_02845"
     CDS             1536..2426
                     /locus_tag="VE686_02845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012332095.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR01459 family HAD-type hydrolase"
                     /protein_id="HYY83425.1"
                     /translation="MSPQPAAGADIDIVAGLAGMAPSYDVVFCDVWGVLHNGITAFAG
                     ASDALTRYRAGGGRVVLISNAPRPGAALAPQLDRIGVPRTAYDAILTSGDLTRAAVVE
                     RLGQVVHHLGPERDLAIFAGLAVRFGAVEQADYVVCSGFHNDEVETVEGYGDALAAMR
                     GRSLWMLCANPDIVVERGDRLVPCAGAIAAAYEAIGGDVYWAGKPHRPVYDEALAISA
                     RLLARERVPVDRVLAVGDAMRTDIAGAAALGIDSLLVARGIHAAEIGAQDGPLDPARV
                     GRWLAGQEVRPTAVVDALTW"
     gene            2420..>2731
                     /locus_tag="VE686_02850"
     CDS             2420..>2731
                     /locus_tag="VE686_02850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012452425.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional riboflavin kinase/FMN
                     adenylyltransferase"
                     /protein_id="HYY83426.1"
                     /translation="MVIVDGSSAPGRHFTVCRDGDPVPPALARAVVAVGNFDGVHRGH
                     QHLIAVAEAQARENGGPAAVMTFEPHPQAFFRPDVPHFRLTPDPVKLAVLERLGLDGV
                     FV"
BASE COUNT          374 a          966 c          987 g          404 t
ORIGIN      
        1 tcacgtgcgg ccgcgcggcg agcgagtgca tcgcgtcgcc gaaggccgcc tccatcgccg
       61 cgccgcgggt gagcaggccc tcctcggcgt agacgtcgag cgtggccagc ccggcggcgc
      121 aggcgagcgg gtgcgccgag taggtgtagc cgtggaagag ctcgatgacg tggtcggggc
      181 ccttcatgaa ggcgtcgtgg atgcccttgc gcacgatgac cccgcccatc ggcacggtgc
      241 cggagttcac gcccttggcg aacgtgatca tgtccggaat gacgccatag cgctcggccg
      301 cgaaagcgaa gccgaggcgc ccgaagccgg tgatgacctc gtcgaagatg agcaggatgc
      361 cgtggcggtc gcagatctgg cgcaggcgct gcaggtagcc cttgggcggc ggcaggacgc
      421 cggtcgagcc ggccatgggc tccaccacca cggccgcgat ggtcgaggcg tcgtgaagcg
      481 tgacgatgcg ctcaaggtcg tcggcgaggt gcgcgcccga ctccggctcg ccgcgcgaga
      541 acgcctgttc ggcgcggttg taggtgtgcg gcaggtggtc gacgccggcc agcagcgagc
      601 cgaagaactt gcgattgttg acgatgccgc cgaccgagat gccgccgaag ccgacgccgt
      661 gatagccgcg ctcgcggccg atgagccgct ggcgctggcc ctggccgctg acgttccaat
      721 acgcgatggc gatcttcagc gcggtgtcgg ccgcctcgga gccggaattg cagaagaaca
      781 cgtggtcgag gtcaccgggc gccagcgacg cgaggcgcga ggcgagggcg aagggcttcg
      841 gatggccgta ctggaaggcc ggcgcgaaat cgagctcttc cgccgccgtc tggatcgccg
      901 agacgatctc gtcgcggttg tggccggcgt tgcagcacca caggccggcg gagccgtcga
      961 gcacggcgcg cccttccggc gtgtagtaat acatgccctt ggcgcgcgtg atcatgcgcg
     1021 ggcgctgctt gaacgagcgg ttcgccgtga acggcagcca ccacgactcg aggtcgttcg
     1081 gggactggcg atcgttggcg gcctgcaggc cctgggcgct cgacataatc gtctctcgtt
     1141 cgtgtgtgcg gcggaccgcg acgttctagc agccgcgccc gcgcccggaa agcacgtcag
     1201 agtgtcattg cgcgcgcctc gtacccggcc gcggtcagcg cctcggcgac gacgagggct
     1261 tcggcccgcg tcgtgatcgc gacgcgctgg tgcgccagat cgaccgagac ctcggcctcg
     1321 gaatcgagcc ggcgcaaggc gtcgcgcacg gcctgcgcac agcgctcgct tcgcatgttg
     1381 tcgatctgca tcagcagttc cttgcgcggc tcgctcatcg acgtcctcct cgattgcggc
     1441 ggctcgaggc cgcgggcgaa ggtcaacgcg cgagggcgag atttgacaat gccggccccg
     1501 cgccctaccg gccccgctcc accgacaagg catccatgag cccgcaaccc gccgcaggcg
     1561 cggacatcga catcgtcgcc gggcttgccg gaatggcgcc gtcgtacgac gtcgtcttct
     1621 gcgacgtctg gggcgtgctc cacaacggca tcacggcttt cgcaggcgca tccgacgccc
     1681 tgacgcgcta ccgcgcgggc ggcggccggg tggtgctgat ctccaacgcg cctcgacccg
     1741 gggcggcgct ggcgccgcag ctcgaccgca tcggcgtgcc ccggaccgcc tacgacgcca
     1801 tcctgacctc gggcgacctc acccgcgccg ccgtcgtcga gcgcctgggc caagtcgtgc
     1861 accacctcgg ccctgagcgc gacctcgcca tcttcgcagg cctggcggtc cggttcggcg
     1921 ccgtcgagca ggccgactac gtcgtgtgct cgggcttcca caacgacgag gtggagacgg
     1981 tcgaaggcta cggcgacgcg ctcgcggcga tgcggggtcg ctcgttgtgg atgctgtgcg
     2041 ccaaccccga catcgtcgtc gagcgcggcg acaggctcgt cccctgcgcg ggcgccatcg
     2101 cggccgctta cgaggcgatc ggcggcgacg tgtactgggc cggcaagccg caccggcccg
     2161 tctatgacga ggcccttgcg atctcggccc ggcttctcgc ccgcgagcgc gtcccggtcg
     2221 accgcgtcct cgcggtcggc gacgccatgc gcaccgacat cgcgggcgcg gcggcgctcg
     2281 gcatcgactc gctcctcgtt gcccgcggca tccacgcggc cgagatcgga gcgcaggacg
     2341 ggcccctcga tcccgcgagg gtcggccgct ggctcgccgg ccaggaggtg cgcccgacgg
     2401 ccgtcgtgga cgctctgacg tggtgatcgt cgacggaagc tccgcgcccg ggcggcactt
     2461 caccgtctgc cgcgacggcg atccggtgcc gccggcgctc gcgcgcgcgg tcgtcgcggt
     2521 cggcaacttc gacggggtgc accgtggcca tcagcacctg atcgccgtgg ccgaggcgca
     2581 agcccgcgag aatggcggac ccgcggcggt gatgaccttc gagccgcatc cgcaggcctt
     2641 cttccgcccg gacgtgccgc atttccggct cacgcccgat ccggtgaagc tcgcggtgct
     2701 cgagcgcctc ggcctcgacg gcgtcttcgt g
//
LOCUS       DASQWN010000152         2167 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_408814, whole genome shotgun sequence.
ACCESSION   DASQWN010000152 DASQWN010000000
VERSION     DASQWN010000152.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2167)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2167)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2167
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_408814"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..286)
                     /locus_tag="VE686_02855"
     CDS             complement(<1..286)
                     /locus_tag="VE686_02855"
                     /inference="COORDINATES: protein motif:HMM:NF015735.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YciI family protein"
                     /protein_id="HYY83427.1"
                     /translation="MALFAALIAFTEDEELRLQTRPVHREYLRSLLDAGKLSMSGPWA
                     DDTGALIIYEAEDMAEAERILDSDPYRSAGVIANVTLKEWKVVLRAPATID"
     gene            419..>2167
                     /gene="mutS"
                     /locus_tag="VE686_02860"
     CDS             419..>2167
                     /gene="mutS"
                     /locus_tag="VE686_02860"
                     /inference="COORDINATES: protein motif:HMM:NF003810.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0030983 - mismatched DNA binding [Evidence
                     IEA];
                     GO_process: GO:0006298 - mismatch repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA mismatch repair protein MutS"
                     /protein_id="HYY83428.1"
                     /translation="MNSNARTLLLPGADSAQPEGDASFKAVPPIRRQYLQIKRRFPDT
                     ILLFRLGDFYETFEDDAEIAARVLEIVLTSRELGKGVRVPMAGIPHHAADGHIARLVA
                     AGHKVAICEQIGGLDRGRSLIDRDVTRIVTPGTVTDPAMLESHRNTYIAAVVCERARA
                     GIAYADLSTGEFAATQLAAGSPTEVCDAVGRELLRLGAVEVVLPADHENGAGALTEQW
                     LPESLAVSRTDSWRWKADRARERLLRHFEVQSLDGFGLAEQRMAVQAAGALLDYLADT
                     QRSALVQISAIHTYSAAGFMELDMQARRNLELAESARGDKRHGLLAVLDETCTPMGAR
                     LLRRWLGQPLLDLERIHNRQDAVSHYVTDALARAAMRQALHQIGDIERLANRALTGAI
                     TPRELGALRQSLVLVTKIASEMTNVPGCPSLLRVRDACQAVQELLRRALPDDPPAVLG
                     NGDAIRPGFAPELDEHDRAVREARSWIAGLERQERQRTGIRSLKVGYNRVFGYFIEIG
                     TTALAAAEKERVSTAEPAPVLPVEYQVRQSLANATRYVTAQLKEAESRVLGAQETLAH
                     LEADLLQRIVAEVAAHV"
BASE COUNT          403 a          709 c          674 g          381 t
ORIGIN      
        1 cgtcgatggt cgctggcgcc ctcaagacta ccttccactc ttttagtgtg acgttcgcga
       61 tcactccagc gctgcggtac gggtcgctgt cgagaatgcg ctctgcctcg gccatatcct
      121 ccgcctcgta gatgatcagt gccccagtgt cgtcagccca cggaccggac atcgagagct
      181 ttcccgcatc gagtaacgat cgcaaatatt cgcgatgcac cgggcgggtc tgcaggcgaa
      241 gctcctcatc ctcggtgaat gcaatcagcg cggcgaacag tgccattgtt tgtccctccc
      301 tcgactccgt cttgcggcag gctcggaact cgctccttgc gtccgctcgg ttgaccacgt
      361 agcctaatcg tccccgctcg cccccgcgag ccgacagatc agcaaacgag agggcgcatt
      421 gaactccaac gcgcgaacgc tcctgctgcc gggcgctgat tcggcgcaac ctgagggcga
      481 cgcctcgttc aaggcggtgc ccccgatccg ccgtcagtat ctccagatca aacgacggtt
      541 cccggacacc atcctcctct tccgcctcgg agatttctac gagacgttcg aagacgatgc
      601 ggaaatcgcg gcgcgtgtcc tggagatcgt gctcaccagc agggagctgg gcaagggcgt
      661 ccgcgttccc atggccggaa ttccgcacca cgcggctgac ggtcacatcg cgcggctcgt
      721 ggcagctgga cacaaagtcg ccatctgcga acaaatcggg ggtctggacc gcggccggtc
      781 gctaatcgac cgagatgtga cccgtatcgt cacgccggga acggtcaccg accctgcaat
      841 gctcgaaagc caccgcaata cgtacatagc cgcggtcgtc tgcgagcggg cgcgggcggg
      901 gattgcctac gcggatcttt ccacgggcga atttgcggcg acgcagcttg ctgcgggatc
      961 gccaaccgag gtatgcgacg ccgttggccg ggaactgctt cgtctcggcg ccgtggaagt
     1021 cgtccttcct gcagaccacg agaacggggc tggtgcactg accgagcaat ggctcccgga
     1081 aagtctggca gtcagccgca ccgattcctg gcgctggaag gcagatcgag caagagaaag
     1141 attgttgcga catttcgagg tgcaatcgct tgatgggttc ggtcttgcgg aacagcggat
     1201 ggccgttcaa gcggccgggg ctctgctcga ctacctcgcc gatacccagc gctccgcgct
     1261 cgttcaaatc agcgcaattc atacttatag cgccgccggc ttcatggagc tggacatgca
     1321 ggcgcgccgc aatctggagc tggcggaaag cgcgcgcggg gataaacgtc acggcctgct
     1381 cgcggtgctc gacgagacgt gcacaccgat gggcgcccgc ctgttgcggc gctggctggg
     1441 acagcctctt ctcgatctcg aaaggattca caatcgacag gacgccgtga gccactacgt
     1501 gaccgacgcg ctcgcccgcg ccgcgatgag gcaagccctg caccagatcg gggacatcga
     1561 gcgcttggca aaccgagcac tcaccggcgc gatcactcct cgagaactgg gagcgctgcg
     1621 gcagtccctt gtcctcgtca cgaagatcgc gagtgagatg accaatgttc ccggctgtcc
     1681 gtcgttgcta cgagtgcggg acgcctgcca agccgttcag gagctcttgc gtcgtgcgtt
     1741 gccggacgat ccgcctgcgg tcctcgggaa cggagacgcg atccgacccg ggtttgctcc
     1801 cgaactggac gagcacgacc gcgctgtgcg cgaggcgcga tcctggatcg ccgggctcga
     1861 acggcaagag cggcagcgaa cggggatccg ctccctcaag gtcggctaca accgagtatt
     1921 cggctacttc atcgagatcg gtaccaccgc gctcgccgca gccgaaaaag agcgagtgtc
     1981 cacggcggaa cccgcgccgg tcttgccggt ggaataccag gtccggcaat ctctcgcgaa
     2041 cgctacccgc tacgtcacgg cacaactcaa ggaagcggag tcccgggttc taggagccca
     2101 ggagaccctg gctcatctcg aagccgacct gctgcagcgc atcgtggccg aagtggcggc
     2161 acacgtt
//
LOCUS       DASQWN010000153         3036 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_309864, whole genome shotgun sequence.
ACCESSION   DASQWN010000153 DASQWN010000000
VERSION     DASQWN010000153.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 3036)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3036)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3036
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_309864"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2953)
                     /locus_tag="VE686_02865"
     CDS             complement(<1..2953)
                     /locus_tag="VE686_02865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019443626.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015562 - efflux transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0042908 - xenobiotic transport [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux RND transporter permease
                     subunit"
                     /protein_id="HYY83429.1"
                     /translation="MSRFFIDRPVFATVLSLVIVLAGLLAMRALPISQYPQIVPPEVV
                     VTATYPGANAQTIAETVAAPLEQQINGVENMLYMRSTSTGSGTLNLSISFAIGTNPDQ
                     ATINVNNRVQRATVLLPEEVRRQGVTVNKRSSSILQVLAMSSPGGRYDTIFISNYALI
                     NVIDELRRTPGVGDASLFGASDYSMRIWLSPDRVAQYGLTPTDVANSIREQNAQFAAG
                     RFGEEPMRQEQAFTYSVTTPGRLVDPREFENIILRSDANGGALRLKDVARVELGSLNY
                     AFSATFNGSPTVPIGVYLQPGANALQVAAAVKETMDRLSQRFPEGLRYDVPFNTTRFV
                     EVSINEVIHTFVEAIILVVLVVFLFLQSVRATLIPIIAVPVSLIGTFAGMYLLGFSIN
                     LLTLFGMVLAIGIVVDDAIVVLENVERIMSQERKGPREAAIQAMEEVSGPVIAIVLVL
                     CAVFIPVSFLGGLAGELYRQFAVTIAVSVVISGIVALTLTPALCALLLKDTHAEPWAP
                     FRVFNRGFGWVTRRYTAGVNFFLRRAAVGVGLVVIMLVATWALFQRVPSGLVPNEDQG
                     YIFLVTALPPAASLDRTRAITEKVTEGVMKNPAVATIVTFSGFDLLSGAQKTNSGVSF
                     VSLKDWSVRTDPSQDARNLAPAMGALNANFRDGVVIGFNPPPIQGISTTGGFEFFLQD
                     RTGGSLENLAQATQRVIAAANQRPEVRGVSTTFSTGVPQYRIDVDREKAKAIGVPITD
                     IFTTMQSTFGSLYVNDFTLFGRTYRVSLSSEGEFRQSPEDLRHVFVRSSNGVMVPLNV
                     VVSVSRIVGPDVVDRFNIFPAARVQGSPAPGYSSGQAIAAMQEVVAQTLGPEYTPGWT
                     GSAYQELATAGTGNQGFLFGLVMVFLILAAQYERWSLPLAVITAVPFAVFGAIVAIWL
                     RGIENDVYFQIGLVTLIGLAAKNAILIVEFASERFREGMPPFEAAMEAARLRFRPIIM
                     TSLAFILGVFPL"
BASE COUNT          529 a          938 c         1129 g          440 t
ORIGIN      
        1 caagcgggaa gacgcccagg atgaacgcaa gcgaggtcat gatgatgggc cggaagcgca
       61 ggcgagccgc ttccatggcg gcttcgaacg gcggcatgcc ctcgcggaag cgctcggacg
      121 cgaactcgac gatgaggatc gcgttcttgg ccgcaagccc gatcagggtc acgagcccga
      181 tctggaagta gacgtcgttc tcgatgcccc gcagccagat cgccacgatg gcgccgaaca
      241 ccgcgaacgg cacggccgtg atgacggcga gcggcagcga ccagcgctcg tattgcgccg
      301 cgaggatgag gaacaccatg acgagcccga acaggaagcc ctggttgccg gtcccggccg
      361 tcgcgagctc ctggtaggcc gatcccgtcc agcccggcgt gtactcgggg ccgagcgtct
      421 gggcgacgac ctcctgcatg gccgcgatgg cctggccgga ggagtagcct ggagcggggc
      481 tcccctgcac gcgtgcggcc gggaagatgt tgaagcggtc gaccacgtcc ggaccgacga
      541 tgcggctcac cgagacgacc acattgagcg gcaccatcac cccgttcgag gagcgcacga
      601 agacgtggcg caggtcctcg ggcgactgcc ggaactcgcc ctcggaggac aggctgacgc
      661 ggtaggtgcg gccgaagagg gtgaagtcgt tgacgtagag gctcccgaac gtgctctgca
      721 tcgtcgtgaa gatgtcggtg atcggcacgc cgatggcctt cgccttctcg cggtcgacgt
      781 cgatccggta ttgcggcacg ccggtgctga aggtggtcga gacgccccgc acctccggcc
      841 gctgatttgc ggcggcaatg acgcgctggg tcgcttgggc gaggttctcg agcgagccgc
      901 cggtgcggtc ctgcaggaag aactcgaagc cgcccgtcgt cgagatgccc tggatcggcg
      961 gagggttgaa gccgatgacc acgccgtcgc ggaagttggc gttgagggcg cccatggcgg
     1021 gggcgagatt gcgcgcgtcc tgggacgggt cggtcctcac cgaccagtcc ttcaggctga
     1081 cgaacgagac gcccgaattg gtcttctgcg cccccgagag caggtcgaag cccgagaagg
     1141 tgacgatcgt ggcgaccgca gggttcttca tcaccccttc ggtgaccttc tcggtgatcg
     1201 cgcgcgtacg gtcgagggag gccgccggcg gcagggcggt cacgaggaag atgtagccct
     1261 ggtcctcgtt cggcacgagc ccgctcggga cgcgctggaa cagggcccag gtcgcgacga
     1321 gcatgatgac gacgagcccg acaccgacgg cggcgcgccg caggaagaag ttgacgccgg
     1381 cggtgtagcg acgcgtgacc cagccgaagc cgcggttgaa gacgcggaac ggcgcccagg
     1441 gctcggcatg cgtgtccttc aacaggaggg cgcacaaggc cggggtcagg gtcagggcga
     1501 cgatgccgga gatcaccacc gagaccgcga tggtgacggc gaactggcgg tagagctcac
     1561 ccgcgagccc gcccaggaat gacacgggga tgaacacggc gcagagcacg agcacgatgg
     1621 cgatgacagg cccgctcacc tcctccatgg cctggatggc ggcctcgcgg gggcccttgc
     1681 gctcctgcga catgatgcgc tcgacgttct cgagcaccac gatggcgtcg tcgacgacga
     1741 tgccgatggc gaggaccatc ccgaacaggg tcaggaggtt gatggagaac ccgagcagat
     1801 acatgcccgc gaaggtgccg atcagcgaca ccggcacggc gatgatcggg atcagggtcg
     1861 cccgcacgct ctgcaggaac aggaacacga cgaggacgac gaggatgatg gcctcgacga
     1921 aggtgtggat cacctcgttg atcgagacct cgacgaagcg cgtcgtgttg aacggcacgt
     1981 cgtagcgcag gccctctggg aagcgctgcg acaggcgatc catggtctcc ttcacggccg
     2041 cggcgacctg gagcgcgttg gctccgggct ggaggtagac gccgatcggc accgtcggcg
     2101 aaccgttgaa ggtcgccgag aacgcgtagt tgagggaccc gagctcgacg cgggcgacgt
     2161 ccttcagccg caaggcgccg ccgttggcgt cggagcgcag gatgatgttc tcgaactcgc
     2221 gcgggtcgac gaggcggccg ggcgtcgtca ccgagtaggt gaaggcctgc tcctggcgca
     2281 tcggctcctc gccgaagcgt ccggcggcga actgcgcgtt ctgctcgcgg atcgaattcg
     2341 ccacgtccgt gggcgtcagg ccgtactgcg ccacccggtc ggggctgagc cagatgcgca
     2401 tggagtagtc ggaggcgccg aacagcgagg cgtcgccgac gccgggcgtg cgccggagct
     2461 cgtcgatgac gttgatgagg gcgtagttcg agatgaagat ggtgtcgtag cgcccgcccg
     2521 gcgacgacat cgccagcacc tgcaggatcg agctcgagcg cttgttgacg gtgacgccct
     2581 ggcggcggac ctcctcgggc aggaggacgg tcgcgcgctg cacgcggttg ttgacgttga
     2641 tggtcgcctg gtcggggttg gtgccgatgg cgaacgagat gctgaggttg agcgtgcccg
     2701 accccgtcga ggtcgagcgc atgtagagca tgttctcgac gccgttgatc tgctgctcga
     2761 ggggcgccgc cacggtctcg gcgatcgtct gcgcgttggc gccggggtag gtggccgtga
     2821 ccaccacctc gggcgggacg atctgagggt attgcgaaat cggcagcgcc cgcatggcga
     2881 gcaggcccgc gagcacgatc accagggaga ggacggtcgc aaaaaccggc cggtcgatga
     2941 agaacctcga gatcacggcc gcgctcctat gggcgatgcg gcaccgggcg gcgtcgcttg
     3001 cgccgcctgg ccggcggagg cgggcggggc gacgcg
//
LOCUS       DASQWN010000154         2764 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1016826, whole genome shotgun sequence.
ACCESSION   DASQWN010000154 DASQWN010000000
VERSION     DASQWN010000154.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2764)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2764)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2764
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1016826"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..213
                     /locus_tag="VE686_02870"
     CDS             <1..213
                     /locus_tag="VE686_02870"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY83430.1"
                     /translation="LGLLCAWAVPDLLARARGEEYDGDLLGTLVIALVILLMPLAVSE
                     ASAIAGFAGGAIGLLCGLVLARSHRA"
     gene            442..1167
                     /locus_tag="VE686_02875"
     CDS             442..1167
                     /locus_tag="VE686_02875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012752280.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HYY83431.1"
                     /translation="MVQATSAQLVPEQLSGQLVVPALSAKVSVGQLAYEALRNAILAM
                     DVYHSDADLRLDEKTLAAGLGVSRTPVREALARLEHEGLVRIVPRRGVYIVRKSKAEI
                     IEMITVWAALESMAARLVCERATDEEIGTLRTLFSNFEDGEVRSHLNEYSVANLRFHQ
                     RIIELSQSPMILQLVQNLLVHVRAIRGRTIGEDDRAERSIVDHMHIIEALEARDSELA
                     ERLVRDHALNLADHVEHTVDHLD"
     gene            1230..>2764
                     /locus_tag="VE686_02880"
     CDS             1230..>2764
                     /locus_tag="VE686_02880"
                     /inference="COORDINATES: protein motif:HMM:NF012431.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030976 - thiamine pyrophosphate binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine pyrophosphate-binding protein"
                     /protein_id="HYY83432.1"
                     /translation="MATTTTAPEVTFPESKAVEPGLISGGHLVAKALKAEGIDVIYTL
                     CGGHIIDIYDGCLDEGIQVIDVRHEQVAAHAADAYARVTGKPGCAVVTAGPGTTDAIT
                     GVANAFRAESPFLLIGGQGALNQHKMGSLQDLPHVDIMKPITKFSSNVVTTERVADMC
                     SMAFREAMAGAPGPVFLEIGRDILDNKVPVENAVIPAEPSSYRASTKSIGDPNDVDKL
                     TEILINAERPCVLLGTQVWTARGHQEAIEFVRELNIPAYMNGAARGTLPPGDPHHFHL
                     TRRYAFNNADVIVIVGTPFDFRMGYGKRLSREAKVIQIDMDYRTVGKNRDVSLGLVGD
                     PGAILREVAKAAKGRSKGEKREGWLESLRAEEQRLKEERLPRLMKDTAPIHPLRLAHE
                     INEALTENTRFIGDGGDIVTFSGGVVQPKGPGLWMDPGPLGTIGVGMPFCIGAKQADP
                     DREVMCLFGDGAFSLTGFDFDTAVRFDLPFIGIIGNNSYMNQIRYGQIQKYGEDRGDI
                     GNKL"
BASE COUNT          475 a          983 c          912 g          394 t
ORIGIN      
        1 ctcgggctgc tctgcgcctg ggcggtcccc gatctcctcg cccgcgcgcg cggggaggag
       61 tacgacggcg acctcctcgg cacgctcgtc atcgcgctcg tcatcctcct gatgccgctt
      121 gcggtctcgg aggccagcgc gatcgccgga ttcgcgggtg gcgcgatcgg cctcctgtgc
      181 gggctcgtgc tggcgcgctc gcaccgcgcg tagacgcgcc acgtcggaag cgaacgctgt
      241 cggaatccgc ggtcgaaccg cggggtacga cggcggttgg tgcccttcat cggaacgttg
      301 cgacggcccg agcgaggagg cggacgttcg ccgccgcgca cggcgtttga cgcgttatct
      361 ggtgcctggt atacacaaca ccaggcgcgg aggaggcccg gaggatgcct cacgcgcacg
      421 gaggcgctac tgcacgtggt gatggtccaa gcgacaagcg cacagctcgt gcccgagcaa
      481 ctgagcggcc aattggtcgt gccggcactg agcgcgaagg tgagcgtcgg acagctcgcc
      541 tacgaagcgc tgcgcaatgc gatcctcgcg atggacgtct accactcgga tgccgacctc
      601 cgcctcgacg agaagacgct ggcggccggt ctcggcgtga gccggacgcc cgtgcgggag
      661 gcgctcgcgc gtctcgagca cgagggcctc gtccggatcg tgccgcgccg cggcgtctac
      721 atcgttcgca agagcaaggc cgagatcatc gagatgatca cggtctgggc ggccctcgag
      781 tcgatggccg cacggctcgt ctgcgagcgg gcgaccgacg aggagatcgg cacgctccgc
      841 acgctgttct cgaacttcga ggacggcgag gtgcggtcgc atctcaacga gtactcggtg
      901 gccaacctgc ggttccacca gcgcatcatc gagctctcgc agtcgccgat gatcctccag
      961 ctggtccaga acctgctcgt gcacgtgcgg gcgatccggg gccggaccat cggcgaggac
     1021 gaccgggccg agcgctcgat cgtcgaccac atgcacatca tcgaggcgct cgaggcccgc
     1081 gacagcgagc tcgccgagcg cctggtccgt gaccacgccc tgaacctggc cgaccacgtg
     1141 gaacacacgg tcgaccacct cgattgacag caacccgttc ccgacgctcc gccaggggct
     1201 tcgggaccga gaaggagatc cccgacgtaa tggctacgac gaccaccgca cccgaagtca
     1261 catttcccga gagcaaagct gtggagcccg ggctgatctc gggcgggcat cttgtcgcca
     1321 aggccctcaa ggccgagggg atcgacgtca tctacacgct ctgcggcggc cacatcatcg
     1381 acatctacga cggctgcctc gacgagggca tccaggtgat cgacgtccgt catgagcagg
     1441 tcgccgcgca cgcggccgac gcctacgccc gcgtcaccgg caagccgggg tgtgcggtcg
     1501 tcacggccgg ccccggcacg accgacgcca tcaccggcgt cgccaacgcc ttccgcgcgg
     1561 agagcccgtt cctgctgatc ggcggccagg gcgcgctcaa ccagcacaag atgggctcgc
     1621 tccaggacct gccgcacgtc gacatcatga agccgatcac gaagttctcc tcgaacgtcg
     1681 tgacgaccga gcgcgtggcc gacatgtgct cgatggcctt ccgcgaggcc atggccggcg
     1741 ctcccggccc cgtcttcctc gagatcggcc gcgacatcct cgacaacaag gtgcccgtcg
     1801 agaacgccgt gatcccggcc gagccgagca gctaccgcgc ctcgacgaag agcatcggcg
     1861 accccaacga cgtcgacaag ctcaccgaga tcctcatcaa cgccgagcgt ccctgcgtgc
     1921 tcctcggcac ccaggtgtgg acggcgcgcg gccaccagga ggccatcgag ttcgtccgcg
     1981 agctgaacat ccccgcgtac atgaacggcg ccgcccgcgg gacgctgccc ccgggcgacc
     2041 cgcaccactt ccacctgact cgccgctacg cgttcaacaa cgccgacgtc atcgtgatcg
     2101 tgggcacccc gttcgacttc cggatgggct acggcaagcg cctgtcgcgc gaggcgaagg
     2161 tcatccagat cgacatggac tacaggaccg tcggcaagaa ccgcgacgtc tcgctcggcc
     2221 tcgtcggcga cccgggcgcg atcctccgcg aggttgcgaa ggccgccaag ggccgcagca
     2281 agggcgagaa gcgcgagggc tggctcgagt cgctgcgcgc cgaggagcag cggctcaagg
     2341 aggagcgcct gccgcgcctc atgaaggaca cggcgccgat ccacccgctg cgcctagcgc
     2401 acgagatcaa cgaggccctc accgagaaca cgcggttcat cggcgacggc ggcgacatcg
     2461 tcacgttctc cggcggcgtc gtgcagccga agggccccgg cctctggatg gacccgggcc
     2521 cgctcgggac catcggcgtc ggcatgccgt tctgcatcgg cgccaagcag gccgaccccg
     2581 accgtgaggt catgtgcctg ttcggcgacg gcgcgttcag cctcaccggg ttcgacttcg
     2641 acacggcggt gcggttcgac ctcccgttca tcgggatcat cggcaacaac tcgtacatga
     2701 accagatccg ctacggccag atccagaagt acggcgagga ccgcggcgac atcggcaaca
     2761 agct
//
LOCUS       DASQWN010000155         2978 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1116271, whole genome shotgun sequence.
ACCESSION   DASQWN010000155 DASQWN010000000
VERSION     DASQWN010000155.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2978)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2978)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2978
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1116271"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..585
                     /locus_tag="VE686_02885"
     CDS             <1..585
                     /locus_tag="VE686_02885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015822516.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lytic transglycosylase domain-containing
                     protein"
                     /protein_id="HYY83433.1"
                     /translation="DPFDPEQAIPEAARFLADLRAQFGNLGLAAAAYNGGPGRVSAWL
                     RGAGELRDETRDYVAFITGRSVDDWSADTRQGSEATQARQPVPSEPCLVAVALLRRAP
                     GTTTAEGPMAPWGVQLAGNFSKALALASFARARASYAAVLPEVRPMIIGTRLRARGTR
                     AYYRVRVPQPTRAAATQLCDRLRAVGGACVVLKT"
     gene            complement(592..1782)
                     /locus_tag="VE686_02890"
     CDS             complement(592..1782)
                     /locus_tag="VE686_02890"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HYY83434.1"
                     /translation="MPAFLALLFAYVLSQFYRAFLAVVASDLSRDLGLGPAELGMISA
                     VWFVAFAFAQFPVGWALDRLGPRRTIAGFMTAAVAGAGLLSLTTGYAGALAAMALIGI
                     GCAPVLMGSMYLFARIYPAHRFTILSSLMLGLAAAGNLLGATPLALAAEALGWRTAIA
                     GIAAVTALAVAVVFVVIRDPPMLAAEARASALAGLADVAAIRSLWPMLPLTFVGYAVV
                     ISTRALWIGPFFGEVHGFDATARGNAALAMAAAMAVGALAYGPMERLLGHPKPAVLIG
                     SVATAACFIGVGAWGVGDATVSILLLTAIGFLGMTYAVFMSHACLFFSPALLGRGVTF
                     MNFSFIGGAGVAQWLSGLFVETAQRAGEPPSVTFGRLFLIFGAVLLAAAAVYATAPRG
                     GMRR"
     gene            complement(1836..>2978)
                     /locus_tag="VE686_02895"
     CDS             complement(1836..>2978)
                     /locus_tag="VE686_02895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008964679.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA acetyltransferase"
                     /protein_id="HYY83435.1"
                     /translation="HTPFGKLDNETVETLVVRVANEALEHAGIGPEDVDEIYLGHFNA
                     GFSAQDFTASIVLQATDKFRFKPATRVENACATGSAAVHQAIKTIEAKRARITLVVGV
                     EQMTHAPNPEIAKNLLKASYLAEDGETPGGFAGVFGKIAAAYFQRHGDQSDALAMIAA
                     KNHKNGVGNPYAQMRRDFGFDFCRAESEKNPFVAGPLKRTDCSLVSDGAAALVIADTE
                     TALEMRRAIAFRATAHAQDFLPMSKRDILKFDGCAEAWRRALAQAGAQLSDLSFVETH
                     DCFTIAELIEYEAMGLTPEGQGARAIKEGWTQKDGKLPINPSGGLKAKGHPIGATGVS
                     MHALSAMQLAGEAPEGIQVANATLGGIFNMGGAAVANYVSVLERIK"
BASE COUNT          481 a         1012 c         1056 g          429 t
ORIGIN      
        1 gacccgttcg accccgagca ggccattccg gaggcggcgc gcttcctggc ggatctcaga
       61 gcccagttcg gcaacctcgg ccttgcggcg gcggcctata atggcgggcc ggggcgggtc
      121 tcggcgtggc tgcgcggcgc cggcgagctt cgggacgaga cgcgcgacta cgtcgccttc
      181 atcaccggcc gctcggtcga cgattggtcg gccgatacgc ggcagggcag cgaggcgacc
      241 caggcccggc agcccgtgcc gtccgagcct tgcctcgtgg cggtcgcgct gctgcgccgg
      301 gcgcctggga caaccacggc ggaagggccg atggcgccct ggggcgtcca actcgccggc
      361 aacttctcga aggcgctcgc actcgcctcg tttgctcgcg cgcgggcaag ctacgccgcc
      421 gtcctgccgg aggtccgtcc catgatcatc ggcacgcggc tgcgcgcccg gggcacccgc
      481 gcctattatc gcgtccgggt cccgcagccg acccgcgccg ccgccacgca gctctgcgac
      541 cgtctccgcg ccgtcggcgg ggcctgcgtt gtcctcaaga cctgacgcgc ctcaccggcg
      601 catgccaccg cggggagcag ttgcatagac ggctgccgcc gcgagcagca cggctccgaa
      661 gatgaggaac agccggccga aggtgaccga cggcggctcg ccggcccgct gtgccgtctc
      721 gacgaacagt cctgagagcc actgcgccac tccggcgccg ccgatgaagg agaagttcat
      781 gaaggtgacc ccgcggccga gcagcgcggg cgagaagaac aagcacgcat ggctcatgaa
      841 caccgcgtag gtcatgccga ggaagccgat ggcggtgagc aggaggatgc tgaccgtcgc
      901 gtccccgacg ccccacgcgc cgactccgat gaagcacgcg gcagtcgcaa cgctgccgat
      961 caggaccgcc ggcttcggat gaccgagcag acgctccatg ggcccgtatg caagcgcccc
     1021 gaccgccatg gcggccgcca tggccagcgc cgcgttgccc cgagcggtgg cgtcgaaccc
     1081 gtgcacctcg ccgaagaagg gtccgatcca cagcgcccgg gtcgagatca cgacggcata
     1141 gcctacgaag gtcaggggaa gcatcggcca caggctgcgg atcgccgcga cgtcggcaag
     1201 gccggcgagc gcagacgcgc gcgcctcggc cgccagcatc ggcggatctc ggatgacaac
     1261 gaacacgacg gcaaccgcga gcgccgtgac ggcggctatg ccggcgatgg cggtgcgcca
     1321 gccaagggcc tcggccgcga gggcgagcgg cgtcgccccg aggagatttc cggcggccgc
     1381 aaggccgagc ataagcgatg agagtatggt gaagcgatgg gcggggtaga tgcgcgcgaa
     1441 gaggtacatg ctgcccatga gcaccggcgc gcagccgatg ccgatgagcg ccatggcggc
     1501 gagcgcgcct gcgtagcccg tcgtgagcga gagcaggccc gctcccgcga cggccgccgt
     1561 catgaaacca gcgatcgtcc gacgtggccc taagcggtcg agcgcccagc cgacagggaa
     1621 ctgcgcgaac gcgaaggcga cgaaccagac cgccgagatc atgccgagct cggccggccc
     1681 gagcccgaga tcgcggctga ggtcgctcgc gacgaccgcc aggaacgcgc ggtagaactg
     1741 gctcagcacg taggcaaaga gcagggcgag gaaggcgggc atagccgtgg ctagcgagct
     1801 tgcggcccca ccgctagtcc tgcgcggctt gcactctact tgatgcgctc gagcacgctg
     1861 acgtagttcg cgactgcggc gccgcccatg ttgaagatgc cgccgagggt ggcgttcgcg
     1921 acctggatgc cttcgggcgc ctcgccggcg agttgcatgg ccgagagagc atgcatggac
     1981 acgcctgtcg cgccgatggg atggcccttt gccttgaggc cgccggacgg gttgatgggc
     2041 agcttgccgt ccttctgcgt ccagccttcc ttgatggccc gcgcaccttg cccctcgggc
     2101 gtcagcccca tggcctcgta ctcgatgagc tcggcgatgg tgaagcagtc gtgcgtctcg
     2161 acgaacgaga gatccgaaag ctgcgcgccg gcctgcgcga gtgcgcgccg ccaggcttcc
     2221 gcgcagccgt cgaacttcag gatgtcgcgc ttcgacatcg gcaggaaatc ctgcgcgtgc
     2281 gctgtggccc ggaacgcgat ggcgcggcgc atctcgagcg ccgtctcggt atcggcaatc
     2341 accagtgccg cggcgccatc ggacaccagc gagcagtcgg tgcgcttcaa gggccctgct
     2401 acgaacgggt tcttctcaga ctcggcgcgg cagaagtcga agccgaagtc ccggcgcatc
     2461 tgcgcataag gattgccgac gccgttcttg tggttcttgg ccgcgatcat ggcgagcgcg
     2521 tccgactggt cgccgtgacg ctggaaatac gccgccgcga tcttgccaaa gacgccggcg
     2581 aagccgccgg gcgtctcgcc gtcctcggcg agataggagg ccttgagaag gttcttggcg
     2641 atctcgggat tgggcgcgtg cgtcatctgc tcgacgccga cgacgagcgt gatcctcgcg
     2701 cgctttgcct cgatggtctt gatcgcctga tgcacggcgg cggagcccgt cgcgcaggcg
     2761 ttctcgacgc gggtcgccgg cttgaagcgg aacttgtcag tggcctgcag gacgatcgag
     2821 gccgtgaagt cctgggcgct gaagccagcg ttgaaatgcc cgaggtagat ctcgtcgacg
     2881 tcctcgggcc cgatcccggc gtgctccagg gcttcgttcg ccacccggac gacaagggtt
     2941 tcgacggtct cgttgtcgag cttgccgaaa ggcgtgtg
//
LOCUS       DASQWN010000156         2754 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1414182, whole genome shotgun sequence.
ACCESSION   DASQWN010000156 DASQWN010000000
VERSION     DASQWN010000156.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2754)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2754)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2754
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1414182"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..208)
                     /locus_tag="VE686_02900"
     CDS             complement(<1..208)
                     /locus_tag="VE686_02900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009763747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000049 - tRNA binding [Evidence IEA];
                     GO_function: GO:0004526 - ribonuclease P activity
                     [Evidence IEA];
                     GO_process: GO:0008033 - tRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease P protein component"
                     /protein_id="HYY83436.1"
                     /translation="MRARRRVGRLTKRSEFVAAASGRRFHTERMTVQGLLRPEETVSD
                     RDVPSLRVGFTVTKRAGHATERNRM"
     gene            complement(223..357)
                     /gene="rpmH"
                     /locus_tag="VE686_02905"
     CDS             complement(223..357)
                     /gene="rpmH"
                     /locus_tag="VE686_02905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010659431.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L34"
                     /protein_id="HYY83437.1"
                     /translation="MKRTYQPSKLVRKRRHGFRSRMATVGGRKVIATRRARGRKRLSA
                     "
     gene            586..1392
                     /locus_tag="VE686_02910"
     CDS             586..1392
                     /locus_tag="VE686_02910"
                     /inference="COORDINATES: protein motif:HMM:NF020893.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TVP38/TMEM64 family protein"
                     /protein_id="HYY83438.1"
                     /translation="MANDSGETGGEPRRWTRYLPITVIAILIVAVIASGGVNFETVVA
                     YRDSLQGWADRYGPLAVLAYAAVYVTGVALSVPGAVFLTILGGFLFGWLLGGTLAWLA
                     ATLGAVLVFLIARTSIGDILARKAGPRLQKLAEGFRRDAFSYLLFLRFLPIMPFWLTN
                     LAPALLGVPARTFALASLIGLVPATFTFAGIGASLETLIAGQKGELEQCVASGAANCS
                     FEPSVWALLQPQHIAAFAALGVLSLVPVLVRRWRRHAEPAHSAAPQERAP"
     gene            1389..>2754
                     /locus_tag="VE686_02915"
     CDS             1389..>2754
                     /locus_tag="VE686_02915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019404752.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HYY83439.1"
                     /translation="MSEVLKPDLCVIGAGSGGLSVAAIAASFGVSVVLVERDRMGGDC
                     LNVGCVPSKALIAAGDRARSIRDSGRFGLERAEPRTNYARVRDHVQGVIAAIASNDSA
                     ERFAALGVRVIKAEARFTDPRTLVAAGVTIKARRFVLATGSRPAIPPVPGLSDVPYFT
                     NETVFELTRRPERLVIIGGGPIGLELAQAHRRLGAEVSIIEAGRLLPREDAELAGVIE
                     RRLAAEGIDLRMGAAVAAVEGRGDRIAVLLEGGDAIEGSHVLVATGRTPTVDGLGLEA
                     ARIKTDRSGILVNRALRTSNRRVYAIGDCAGGAGAAHRWTHSANHQAGLVIRSALFRL
                     PIGLDAAPMPRVTFTDPELAAVGMSEEDARAARRPFRILRWPFAENDRAQAERATEGL
                     VKAIVTPRGRVLGCAIAGPHAGELIAPWTLAIRKGLKAQDLAGTVFPYPTLSEASKRA
                     AVEFL"
BASE COUNT          366 a          997 c          949 g          442 t
ORIGIN      
        1 gcatgcggtt gcgctcggtc gcgtgcccgg cgcgcttcgt caccgtgaac ccgacgcgca
       61 ggctcggcac atcccggtcc gacacggtct cctcgggccg cagcaggccc tgcaccgtca
      121 tgcgctccgt atggaagcgg cggccagaag ccgccgccac gaactcagac cgcttggtga
      181 gacgcccgac cctgcgcctt gcgcgcatcg cgggaggtcg cgtcaggccg acaggcgctt
      241 gcggcctcgc gcgcggcgcg tggcgatgac cttgcgcccg ccgaccgtcg ccatgcgcga
      301 gcggaagcca tggcggcgct tgcggacgag cttgctcggt tgataggtcc tcttcacggc
      361 tcttctccgg taccggtctc gcgggactag cagtggggcg gcaggcgggg agcgcgccgc
      421 gatcagccca cgagatgtcc caaaaaaacg cggatcagcg cccgccgggg cgccgtcctg
      481 caaggcgcgg cttatgacgg aaccggtccg cgaagtcaac gcaccagccc cgtctcgcca
      541 gggcagcgcg ccccgctata ctgccgcggc aagcgggagc ggatggtggc caacgacagc
      601 ggggaaacgg gaggcgagcc gcgccgctgg acgcgctacc tcccgatcac ggtcatcgcc
      661 atcctcatcg tcgccgtcat tgcttccggg ggggtgaatt tcgagacggt ggttgcgtat
      721 cgcgacagcc tgcagggctg ggcggatcgt tacggcccgc tcgcggtgct cgcctacgcg
      781 gccgtctacg tcacgggcgt cgccctgtcg gtccccggcg ccgtgttcct gaccatcctc
      841 ggcggctttc tcttcggctg gcttctcggc ggcacgctcg cctggctcgc ggcgacgctc
      901 ggggccgtcc tggtgttcct gatcgcccgg acctcgatcg gcgacattct cgcccgcaag
      961 gcgggcccgc ggcttcagaa gcttgcagaa ggcttccgcc gggatgcctt ctcgtacctt
     1021 ctgttcctgc gctttctccc catcatgccg ttctggctca ccaatctcgc gccggcgctg
     1081 ctcggcgtcc cggcgcggac cttcgcgcta gcctccctca tcggcctcgt gccggcgacg
     1141 ttcaccttcg cgggcatcgg cgcgagcctc gagaccctga tcgccgggca gaaaggcgag
     1201 ctggagcagt gcgtggcgag cggcgccgcc aattgcagct tcgagccgag cgtctgggcg
     1261 cttctgcaac cgcagcacat cgcggccttc gccgccctcg gcgtgctgtc gcttgtcccg
     1321 gtcctcgtcc gtcgatggcg ccgccacgct gagcccgcgc acagcgccgc gccgcaggag
     1381 cgtgcgccgt gagcgaggtg ttgaaacccg acctgtgcgt catcggcgca ggatccggcg
     1441 gcctgtcggt cgccgcgatc gcggcgtcgt tcggcgtctc tgtggtgctt gtcgaacggg
     1501 accgcatggg cggcgactgc ctcaatgtcg gttgcgttcc ctcgaaggcg ctgatcgccg
     1561 ccggcgaccg cgcgcggtcg atccgcgatt ccgggcgttt cgggctcgag cgggcagagc
     1621 cgcggacgaa ctacgcccgg gttcgcgatc acgtgcaggg cgtcatcgcc gctatcgcgt
     1681 cgaacgattc cgccgagcgc ttcgcggccc tgggagtacg cgtcatcaag gccgaggcgc
     1741 gtttcacgga cccgcggacg ctcgtcgccg ccggggtaac catcaaggcg cgccgcttcg
     1801 tgctcgcgac aggctcgcgc cccgcgattc cgccggtccc cggcctttcg gacgtgccct
     1861 atttcacgaa cgagaccgtt ttcgagctca cgcgccgccc tgagcggctc gtcatcattg
     1921 gcggcggtcc gatcggccta gagctcgcgc aggcgcaccg ccggctgggc gccgaggtta
     1981 gcatcatcga ggcagggcgg cttctgcccc gcgaagacgc cgagctcgcc ggcgtcatcg
     2041 agcggcgcct tgcagccgag ggcatagatc tccgcatggg agcagccgtc gcggccgtgg
     2101 agggacgagg cgaccgcatt gctgtcctcc tcgaaggcgg agacgccatc gagggcagcc
     2161 acgtgctcgt cgcaaccggg agaacgccta cggtagatgg gctcggcctc gaggccgccc
     2221 ggatcaagac cgaccggagc ggcatcctcg tgaaccgcgc gttgcgaacg tcgaaccgcc
     2281 gcgtctacgc gataggcgac tgcgccggag gcgccggcgc ggcgcatcgg tggacgcaca
     2341 gcgccaacca tcaggcgggc cttgtgatcc gcagcgcctt gttccggctg ccgatcggcc
     2401 tcgacgcggc ccctatgccc cgcgtcacct tcacggaccc ggagcttgcc gcggtgggaa
     2461 tgtccgagga ggacgcccgt gcggcgcggc ggcccttccg gatcctgcgc tggcctttcg
     2521 ccgagaacga ccgtgcccag gccgagcgcg cgaccgaggg cctggtgaag gcgatcgtca
     2581 ccccccgcgg ccgtgtcctc ggctgcgcca tcgcggggcc gcatgcaggc gaactcatcg
     2641 cgccctggac tctcgccatc cgcaaggggc tgaaggcgca ggatcttgcc ggcaccgtgt
     2701 tcccctatcc gacgctgtcc gaagcatcga agcgggccgc ggtcgagttc cttc
//
LOCUS       DASQWN010000157         3016 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_508297, whole genome shotgun sequence.
ACCESSION   DASQWN010000157 DASQWN010000000
VERSION     DASQWN010000157.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 3016)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3016)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3016
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_508297"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            88..1032
                     /locus_tag="VE686_02920"
     CDS             88..1032
                     /locus_tag="VE686_02920"
                     /inference="COORDINATES: protein motif:HMM:NF017416.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HYY83440.1"
                     /translation="MAVALAPRHFFYDRCNAILAEAEFDATVERLCQPDDTDGIGRPS
                     IAPGRYFRMLFAGQFEGLESEREIAWRCADSLSLHRFLRWQDGETVPDPSTLSVTRSR
                     LPLEVHHVVFGLILDIADPHALVRGQRIGVDASTQEANASLRRLVRRDTGEDYQEMLR
                     RLAPESGIETPSPADLIRFDRTRKDKTLSNAEWRSETDPEARLCKRKDGTTPLADKPE
                     HAVDLDTGVIVAAKIPPADQGDTRTLPGTLAQAEAMLDRVGLASTPKDPAERVADQGY
                     HSREGLKALEDSAWSEARKPRAEPHLGTGAEGFRPLAR"
     gene            950..1429
                     /locus_tag="VE686_02925"
     CDS             950..1429
                     /locus_tag="VE686_02925"
                     /inference="COORDINATES: protein motif:HMM:NF025126.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HYY83441.1"
                     /translation="MPGAKRGSPALSRISEQEPKAFARWQGDNAARRAVDNNRARLKS
                     TVAHQAFSLRAEKVERSFALILDSGGRRRTWLRGVENVETRDLIQVAAHNLGLVIRHR
                     FGVGTPRQAAALFWLVSDECQARGLAIWTILVPSRADHRTTAGASPVVLIYLLVFSI"
     gene            1492..2791
                     /locus_tag="VE686_02930"
                     /pseudo
     CDS             1492..2791
                     /locus_tag="VE686_02930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018240773.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS701 family transposase"
BASE COUNT          529 a         1001 c          964 g          522 t
ORIGIN      
        1 cctgcccgcg tgagatgcag agtcagggta gcacgacatg gcgatggggc ggctgagcaa
       61 tcggcgggga ggaggagcac ggcccagttg gcggtcgcgc tggcgccgcg gcatttcttc
      121 tatgaccgct gcaacgcgat cctggcggag gccgagttcg acgcgacggt cgagaggctc
      181 tgccagcccg acgacacgga cggcatcggc cgcccgtcca ttgcgccggg tcgctacttc
      241 cgcatgctgt ttgctggcca gttcgagggc ctggagtcgg agcgcgagat cgcctggcgg
      301 tgtgccgact cgctgtcgtt gcatcgcttc ttgcgttggc aggacggcga gacggtcccc
      361 gacccttcga ccttgagcgt gacacgctcg cggctgccgc tggaagtcca ccacgtggtc
      421 ttcggcttga ttctggacat cgccgacccg cacgctctgg tgcgcggcca gcggatcggc
      481 gtcgatgcct cgacccagga ggcgaacgcc tcgctgcgtc gcctggtccg ccgggatacc
      541 ggcgaggatt accaggagat gctgcgccgc ctggccccgg agagcggcat cgagaccccg
      601 agcccagcgg acctgatccg tttcgaccgg acgcgcaagg acaagacgct gtcgaatgcc
      661 gagtggcggt ccgaaaccga tcccgaggcg cgtctctgta agaggaagga tggcacgacg
      721 cctctcgcag acaagccgga gcacgccgtc gacctcgaca ccggcgtgat cgtggcggct
      781 aagatccctc cggccgacca gggtgacacc cgcacactgc ccggcaccct ggcgcaggcc
      841 gaggccatgc tcgatcgcgt cggcttggca tcgacgccga aggatccggc cgagagggtc
      901 gccgaccaag gctatcattc gcgcgagggc ctgaaggcac tggaggacag tgcctggagc
      961 gaagcgcgga agccccgcgc tgagccgcat ctcggaacag gagccgaagg ctttcgcccg
     1021 ctggcaaggt gacaacgcgg ctcgtcgggc ggtcgacaac aaccgggcgc ggctgaagag
     1081 cacagttgcc catcaagctt tcagcctgag ggcggagaag gtcgagcgca gcttcgccct
     1141 catcctcgac agcggtggcc ggcgccgcac ctggctgcgt ggcgttgaga acgtcgaaac
     1201 gcgcgacctg atccaggtcg ccgcccacaa cctggggctg gtgatccgcc accgcttcgg
     1261 cgtcggaacc ccgcgccagg cggcggcgct cttctggctc gtcagtgacg agtgccaggc
     1321 tcggggtctt gcgatctgga cgatcctcgt gccgtcgcgc gcagaccaca gaacaacggc
     1381 cggagcttcg ccggttgtgc tgatttacct cttggtattc tcaatctaag atcggtaaat
     1441 caacaggctg ttagtcttac tgtgtcataa aatcggcccc atatcggggc catgaccgaa
     1501 acgatcttcc tctccagcga ccagcgtttc cagaactatg tctctcacct cgcgacggct
     1561 ttgggccatg ccgaccgcac ggagcgcttc gtgaactatt gcacggggct gctgctgccg
     1621 ggtgagcgca agagtgtcga gccgatggcg gcccgtctcg acccggccca tgtgcccagc
     1681 gcccaccagg cgctgcatca cttcgttgcc tcggccccgt ggagcgacgc ggccgtgctc
     1741 accgccgtgc gggagcgcgt gcttcccgct ctcctgcgtc agggcccgat caccgcctgg
     1801 atccttgacg acaccgggtt tcccaaaaag ggcaagcact cggtcggtgt agcccggcaa
     1861 tactgtggtc aactcggcaa acaggacaat tgccaagtcg ccgtctcgct gtcgctcgcc
     1921 catgagtggg ccagcctgcc ggtcgcgttt gatctctact tacccgagga ctgggccaac
     1981 gatccggcgc gccaagaccg gggtgccgcc ggaggtcgcc tttcaaacca agccgcagat
     2041 cgcgttgccg cagatccgcc gggctctggc cgaagggctg ccgtccggcg tgatcctggc
     2101 tgatgcgggg tatggcatcg acacggagtt tcgcacggcc ctgaccacct tgagcctgac
     2161 ctatgtcgtg ggcgtgcaat cctcgctcgg cagcgggccg ccgggaggcg gcccgctgcc
     2221 gcccaaaccg tggtccggga ccggacgccc tcccaagctt cggcgtcgcg atcgcgagca
     2281 ccagcccgtc accgccaagt cccttgctca aagcttagcg cccgccgcgt ggcaaaccat
     2341 cacatggcgc cagggcagcc agaatgactt aagcgggcgc tttgccgccg tccgggtccg
     2401 cccatctcac cgggactatg ggcgggccga accgcatccc gaggagtggc tgcggatcga
     2461 gtggccggac ggtgaaccgg aaccgaccaa gtattggtta tcgaccctac cgcagacgat
     2521 ccctctggtc gagttggtgc ctctggcgac gctgcgctgg cgcattgagc gcgattacca
     2581 ggaactcaaa caagagctgg gcctggatca ttacgaaggg cgtggctggc gtggctttca
     2641 tcaccatgcc accttgtgca ttgcggctta tggcttcctc gttcgcgagc gaagtctttt
     2701 tccccctgaa gagccgtatc aatgccaagt gcctgcgcta cccgtgggct ggcggccccg
     2761 agggtctgcc gatccgaccg gagcgccata acccgtcttc catcacctcc gtgcgttgcc
     2821 gtctgacggt cgctttagcc cgccgcttgc cacgctgtcc gtgctgtcag caggtccgtg
     2881 ccgccttcca gtgttcggaa taccaagcgc gggttttatg acacagtagg actactcccc
     2941 tatcagaaaa aacggataga gataccggca gcaaagcaaa taccactgaa aaaaaaacct
     3001 gaaatcatga attcac
//
LOCUS       DASQWN010000158         3175 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1414792, whole genome shotgun sequence.
ACCESSION   DASQWN010000158 DASQWN010000000
VERSION     DASQWN010000158.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 3175)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3175)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3175
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1414792"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1241)
                     /locus_tag="VE686_02935"
     CDS             complement(<1..1241)
                     /locus_tag="VE686_02935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008835830.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tripartite tricarboxylate transporter permease"
                     /protein_id="HYY83442.1"
                     /translation="MLGSLEQFGSALGHLLSGWGVLNVLWATLLGIIIGALPGLTATM
                     GVALMTTLTFTMPHEQAILVLVCIYVGAIYGGSRSAILLNIPGTPASACSTLDGFPLA
                     RQGLAGRAMGISTSGSWLGTLFGILCVAALTPVLSEIALKFQSFEFFWISVFGIVIAG
                     TLAGGDPLKGYIAGFLGLFIATIGQEPYYNYQRFAFGSTDIAGGIGLLPALVGAFGVA
                     EVLQSMRGPAVQAISNKIDSVIPRVEDVFKYWRTILRSGTIGTFIGILPGLGEDTAAW
                     SSYAAARRASKEKEKYGKGSIEGLMAAETGESACVPGAIIPVLTLAVPGSAPAAVLMA
                     AMLIHGLNPGPNLMLQTPEFFYQIVAMLLIADMAKLFFGLTLVRPLLWILLVPRERLM
                     PVVLVLCVVGAFAITSRVFDI"
     gene            complement(1260..1799)
                     /locus_tag="VE686_02940"
     CDS             complement(1260..1799)
                     /locus_tag="VE686_02940"
                     /inference="COORDINATES: protein motif:HMM:NF018979.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tripartite tricarboxylate transporter TctB
                     family protein"
                     /protein_id="HYY83443.1"
                     /translation="MADESLPLLPHEQPLAPRTDLWVGASFLAFSVAVLSLALRMPTY
                     TDQGGQIYTAPALVPSFYAVVILLLSLWLVVRSIRAGALTPAGTQSGPAEAGNSNARF
                     VLAAGLVLVFIVLLIGRMPFWIAAAIFVAAFIAAFEWRPGLDGKARVRGLAVAVVQGV
                     VTGLLVTLVFERVFLVRLP"
     gene            complement(1857..2870)
                     /locus_tag="VE686_02945"
     CDS             complement(1857..2870)
                     /locus_tag="VE686_02945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008835828.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0042597 - periplasmic space [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tripartite tricarboxylate transporter substrate
                     binding protein"
                     /protein_id="HYY83444.1"
                     /translation="MRRFLAAAAVLAAGALALPAAAADYPWKPDRPVTLIVPWAAGGS
                     TDQMARIVATEIEAELKQKVVVVNQPGASGSVGTKGVLEGAKDGYTWAAGAAVDIGGY
                     KVLGLLDSQLKDWHLFFAVANVNTVSANPNAPFKDFGQFLETLKKNGKDVPVATAGLS
                     SAGHNMMETIRKAAPGVEYRHVTYDGGNPAVLSAVSGETQAASQLLVEMSEFIKGKRL
                     VPLAVQADKPVTLEGFGEIPPVTKWLPNMPTPLNYFGIWAPKGTPEPVVQTMEMIWKN
                     KIANSEALKKYAAARAALFTPLSGADAERESMKMLVQTAWLYFDAGKAKVSPETIGIP
                     RPQ"
     gene            2989..>3175
                     /locus_tag="VE686_02950"
     CDS             2989..>3175
                     /locus_tag="VE686_02950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008839204.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gfo/Idh/MocA family oxidoreductase"
                     /protein_id="HYY83445.1"
                     /translation="MTRFAAIGLDHRHIYDLVGELRTAGGTCVGYWPQTTDPRVLAGF
                     RERFPEVPEVADRERLLD"
BASE COUNT          533 a         1058 c         1110 g          474 t
ORIGIN      
        1 tagatgtcga acacccgcga cgtgatcgcg aacgcgccga cgacgcacag gacgaggacc
       61 accggcatca ggcgctcgcg cgggacgagc agaatccaca ggagcggccg caccagggtg
      121 aggccgaaga acagcttcgc catgtcggcg atgagcagca tggcgacgat ctggtagaag
      181 aactccggcg tctgcagcat caggttcggg ccgggattga ggccgtggat cagcatcgcg
      241 gccatgagca cggcggccgg cgccgagccc gggacggcga gcgtcagcac ggggatgatg
      301 gcgccaggca cgcaggcgct ctcgccggtc tcggctgcca tgaggccctc gatcgagccc
      361 ttgccgtact tctccttttc ctttgaggca cgccgcgccg ccgcatagga cgaccacgcc
      421 gccgtgtcct cgccgaggcc cggcaggatg ccgatgaagg tgccgatggt ccccgagcgc
      481 aggatcgtgc gccaatactt gaacacgtcc tcgacccgcg ggatgacgga atcgatcttg
      541 ttcgagatgg cctggacggc ggggccgcgc atcgactgca gcacctcggc gacgccgaag
      601 gcgccgacca gcgcgggcag gaggccgatg ccgccggcga tgtcggtcga gccgaaggcg
      661 aagcgctggt agttgtagta cggctcctgg ccgatggtgg cgatgaacag gccgaggaag
      721 ccggcgatgt agcccttcag cggatcgccg cccgcgagcg tgcctgcgat gacgatgccg
      781 aacacggaga tccagaagaa ctcgaagctt tggaacttca gcgcgatctc gctgaggaca
      841 ggggtcagcg cggcaacgca aagaatcccg aacagggtgc cgagccacga ccccgaggtc
      901 gagatgccca tggcccgccc ggcgagcccc tgccgcgcca ggggaaagcc gtcgagggtc
      961 gagcaggccg aggccggcgt acccggaatg ttgagcagaa tggcgctgcg gctgccgccg
     1021 tagatcgcgc cgacgtagat gcacaccagc accaggatcg cctgctcgtg cggcatggtg
     1081 aaggtcaggg tcgtcatcaa cgcgacgccc atggtggcgg tcagccccgg cagcgcgccg
     1141 atgatgatgc caagcagcgt cgcccacagc acgttgagca cgccccagcc gctgaggagg
     1201 tgcccgagcg ccgagccaaa ttgttcgagg ctgccgagca tgggctttcc gcgtgagcgt
     1261 taaggcaggc ggacgaggaa gacgcgctcg aacacgagcg tgacaaggag tccggtgacc
     1321 acgccctgca caaccgcgac ggcgagcccg cgaacgcgtg ccttgccgtc gagcccgggc
     1381 cgccactcga acgccgcgat gaacgccgcg acgaagatcg ccgcggcgat ccagaacggc
     1441 atccggccga tcagcagcac gatgaacacc agcacgagcc ctgccgcgag tacgaagcgg
     1501 gcgttgctgt tgcccgcttc cgccggtccg ctctgggttc cggcgggcgt gagcgctccg
     1561 gcgcggatcg agcgcacgac gagccaaagg ctgagcagca ggatcacaac cgcgtagaag
     1621 ctcggcacca gcgcgggtgc cgtgtagatc tgcccgccct ggtcggtgta ggtcggcatg
     1681 cgcagcgcca ggctgaggac ggcaaccgag aaggcgagaa agctcgcccc gacccacaga
     1741 tcggtgcgcg gcgcgagcgg ctgctcgtgc gggaggagcg gcagggactc gtcggccatc
     1801 ggcatctctg gagggggagg cggccgcatc cttaggcggc cgcctgatgt gtcgccttat
     1861 tgcgggcgcg ggatgccgat ggtctccggc gacaccttcg ccttgccggc gtcgaaatag
     1921 agccaggccg tctgcaccag catcttcatc gattcccgct cggcgtcggc gccggacaga
     1981 ggggtgaaga gggcggcgcg cgcggccgca tacttcttca gcgcctcgga gttggcgatc
     2041 ttgttcttcc agatcatctc catggtctgc accacgggct cgggcgtgcc cttcggcgcc
     2101 cagatcccga agtagttgag cggcgtcggc atgttgggca gccacttcgt caccggcggg
     2161 atctcgccga agccctcgag cgtcaccggc ttgtcggcct ggacggcaag gggcacgagg
     2221 cgcttgccct tgatgaattc cgacatctcg acaaggagct gcgacgccgc ctgcgtctcg
     2281 cccgatacgg ccgatagaac cgccgggttg cccccgtcat aggtcacgtg gcgatactcg
     2341 acgccgggag ccgctttgcg gatggtctcc atcatgttgt ggccggcgga cgacaggccg
     2401 gccgttgcga cgggcacgtc cttgccgttc ttcttcaacg tctcgaggaa ctggccgaag
     2461 tccttgaacg gcgcgttcgg gttcgccgag acggtgttga cgttggcgac ggcgaagaag
     2521 aggtgccaat ccttgagctg gctgtcgaga agcccgagga ccttgtagcc gccgatgtcg
     2581 accgcggctc ctgcggccca ggtgtagccg tccttggcgc cctcgagcac gcccttggtg
     2641 ccgacggacc cggaggcgcc gggctggttc acgacgacga ccttctgctt gagctcggcc
     2701 tcgatctcgg tcgcgacgat gcgcgccatc tggtcggtcg agccgccggc ggcccagggc
     2761 acgatgagcg tgaccgggcg gtcgggcttc cacggataat ccgccgccgc cgccggtaat
     2821 gccagcgctc cggccgcgag cacggccgcg gctgcaagaa atctgcgcac gatgtcctcc
     2881 ccttcggctt ctgttgaccg agcttgcgcc ggcggctcag actgtcgagc gctcgtgggg
     2941 ccgtcaagcc gcgccggcgt gctccgctct cgtttccgga agctccgcat gacgcgcttt
     3001 gccgcgatcg gcctcgacca tcgccacatc tacgaccttg tcggcgagct gcgcaccgcc
     3061 ggcggcacct gcgtcggcta ctggccgcag accacggacc cccgggtgct cgcgggcttc
     3121 cgggagcgct tccccgaggt gccggaggtc gccgaccgcg agcgcctcct cgatg
//
LOCUS       DASQWN010000159         2815 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1315916, whole genome shotgun sequence.
ACCESSION   DASQWN010000159 DASQWN010000000
VERSION     DASQWN010000159.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2815)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2815)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2815
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1315916"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(97..555)
                     /locus_tag="VE686_02955"
     CDS             complement(97..555)
                     /locus_tag="VE686_02955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019196360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbon monoxide dehydrogenase subunit G"
                     /protein_id="HYY83446.1"
                     /translation="MAMTMNGEAVLPADRNKVWVALNDPEVLKACIPGCQELDKVSDT
                     EFQATVRAAVGPVKATFKGRVQLLDLDPPNGYRIAGEGQGGVAGFAKGGANVRLEDAE
                     GGTRMTYDVEAQIGGKLAQLGGRLINGVAKKYADEFFANFAKQLATESAP"
     gene            745..1665
                     /locus_tag="VE686_02960"
     CDS             745..1665
                     /locus_tag="VE686_02960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006471258.1"
                     /note="LivHMGF is the membrane component of the LIV-I/LS
                     branched-chain amino acid transporter; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid ABC transporter
                     permease LivH"
                     /protein_id="HYY83447.1"
                     /translation="MEVFAQQLINGLTLGSIYGLIAIGYTMVFGIIGMVNFAHGDVFM
                     LSAFIALIFFLILTTWLGISSVALALFIVMIVAMILTSLWGWVLERVAYRPLRGSFRL
                     APLISAIGVSIFLSNFVQVAQGARNKPIPPMVPDVIVLATSDAGYVVALSYKQIIIMA
                     TTAVLLAIFWYLVKRTALGRAQRATEQDRKMARLLGIDTDRTISLTFIIGAALAAVAG
                     TMYLLYYGVVSFADGFVPGVKAFTAAVLGGIGSLPGAVLGGLIIGLIETLWSAYFSIE
                     YKDVAAFSILAIVLIFMPSGILGRPEVEKV"
     gene            1694..>2815
                     /gene="livM"
                     /locus_tag="VE686_02965"
     CDS             1694..>2815
                     /gene="livM"
                     /locus_tag="VE686_02965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009494113.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015658 - branched-chain amino acid
                     transmembrane transporter activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="high-affinity branched-chain amino acid ABC
                     transporter permease LivM"
                     /protein_id="HYY83448.1"
                     /translation="MVAPAAAKTGLVGADAVAAIKDAALSALVMLGLAIPILSYRTDQ
                     GPSNELILRPRWGLVALLCALVFAVRLVMHLGFAQRRIVQARPQALATDPSQLSFFQR
                     VGKLGLPAFLILALTFPAVTALASGGLTEARYWVDLGILILTYVMLGWGLNVVVGLAG
                     LLDLGYVAFYAVGAYSYALLATTFGLSFWICLPLAGLFAAAWGVMLGFPVLRLRGDYL
                     AIVTLAFGEIIRLVLINWVDVTGGGAGISSIPRASFFGLPFTAGDEGFAAFFGLTFSP
                     MHRIVFLYYIILVLALVTNFVTLRLRKLPVGRAWEALREDEIACRSLGINTTNTKLTA
                     FAIGAMFGGFAGSFFAVRQGFISPESFNFLESAIILAIVV"
BASE COUNT          363 a         1017 c          880 g          555 t
ORIGIN      
        1 aagcaggccg cccgatcccg tcgaaatcga atgtgaaccg cgccgaatcg acggtcaagc
       61 gactcgcagc ccggcgctgc tccgctttcg ggggcgttaa ggtgcgcttt ccgtggccag
      121 ctgcttggcg aaattagcga agaactcgtc ggcgtatttc ttggccacgc cgttgatcag
      181 gcgtccgccg agctgggcga gcttgccgcc gatctgggcc tcgacgtcat aggtcatgcg
      241 cgtgccgccc tcggcgtcct cgagccgcac gttggcgccg cccttggcaa agcccgcgac
      301 gccgccctgc ccttccccgg cgatgcggta gccgttcggc gggtcgaggt cgagaagctg
      361 cacccggcct ttgaaggtcg ccttcacggg gccgaccgcg gcacgcacgg tcgcctggaa
      421 ctccgtgtcg ctgaccttgt cgagctcctg gcatccgggg atgcaggcct tcagaacctc
      481 ggggtcgttg agcgcgaccc acaccttgtt gcggtcggcg ggaagcaccg cctcgccgtt
      541 catcgtcatc gccatcgcgt cgatcttcct tggccacgcc cggtccgggc ggctgccgcg
      601 agcttaccgg atgggcagcg ctgcctccaa gacgtatcgc gcgcatgcct tctccaactg
      661 gaacgcccgc cgattctgtg cattcatcgc cgggcggcgc ggagagaagc gggaacggcg
      721 cgccgctggc cgaatgggag agtcatggaa gtcttcgcgc agcagctcat caacgggctg
      781 acgctcgggt ccatctacgg gctcatcgcc atcggctaca cgatggtctt cggcattatc
      841 ggcatggtga acttcgccca cggcgacgtg ttcatgctgt cggccttcat cgccctgatc
      901 ttcttcctca tcctcacgac ctggctcggc atcagctcgg tcgcgctcgc gctgttcatc
      961 gtcatgatcg tggcgatgat cctgacctcg ctctggggct gggtgctcga gcgcgtggcg
     1021 taccggcccc tgcgcggctc gttccgcctc gcgcccctga tctcggccat cggcgtgtcg
     1081 atcttcctgt cgaacttcgt ccaggtcgcc caaggcgcgc gcaacaagcc gattccgccg
     1141 atggtgcccg acgtcatcgt gctggcgacg agcgatgccg gctacgtggt cgcgctgtcg
     1201 tacaaacaga tcatcatcat ggcgacgacg gccgtgctgc tcgccatctt ctggtacctc
     1261 gtcaagagga cggccctcgg ccgggctcag cgcgcgaccg agcaggaccg caagatggcg
     1321 cgcctcctcg gcatcgatac cgaccggacg atctccttga ccttcatcat cggcgcggcg
     1381 ctcgcggccg tcgccggcac catgtacctc ctgtactacg gggtggtgag cttcgccgac
     1441 gggttcgtcc ccggcgtcaa ggccttcacg gcggccgtcc tcggcggcat cgggtccctg
     1501 cccggcgccg tgctcggcgg ccttatcatc ggccttatcg agaccctgtg gtcggcctac
     1561 ttctcgatcg agtacaagga tgtcgccgcc ttctcgatcc tcgccatcgt gctgatcttc
     1621 atgccgtccg gcattctcgg ccggcccgag gtcgagaagg tctgatgcgg ccgtgaccgt
     1681 cccgcaaacc tcgatggtgg cgccggctgc cgccaaaacg ggcctcgtcg gcgccgacgc
     1741 ggtggcggcc atcaaggacg ccgccctctc ggcgctcgta atgttgggtc tggcgatccc
     1801 gatcctgtcc taccgcaccg atcaggggcc ctcgaacgag ctcatcctgc ggccgcgctg
     1861 ggggctcgtc gcgctcttgt gcgccctcgt cttcgccgtg cgcctcgtga tgcacctcgg
     1921 cttcgcgcag cgccgcatcg tccaggcgcg gccccaggcg ctcgccaccg atccctcgca
     1981 gctcagcttc ttccagcgcg tgggcaagct cggcctaccg gcgttcctca tcctcgccct
     2041 caccttcccg gccgtgacgg cgcttgcgag cggcggcctc acggaggcgc gctactgggt
     2101 cgacctcggc atcctcatcc tgacctacgt catgctcgga tgggggctca acgtggtggt
     2161 cgggctcgcc ggcctcctcg acctcggcta cgtcgccttc tacgccgtcg gggcctattc
     2221 gtacgcgctg ctcgccacca cgttcgggct gtcgttctgg atctgcctcc ccctcgcggg
     2281 cctgttcgcg gcggcctggg gggtgatgct cggcttcccg gtgctgcggc tgcgggggga
     2341 ctatctcgcc atcgtcaccc tcgccttcgg agagatcatc cgcctcgtgc tcatcaactg
     2401 ggtggacgtg accggcggcg gcgccggcat ctcgtcgatc ccgcgggcga gcttcttcgg
     2461 cctccccttc acggcgggag acgagggctt cgcggctttc ttcgggctca ccttcagccc
     2521 gatgcaccgg atcgtgttcc tatattacat catcctcgtc ctggcgctcg tcaccaactt
     2581 cgtgacgctg cgcctgcgca agctccccgt cgggcgcgcc tgggaggccc tgcgcgagga
     2641 cgagatcgcc tgccgctcgc tcggcatcaa caccaccaac accaagctca cggccttcgc
     2701 gatcggggcc atgttcggcg gcttcgcggg ctcgttcttc gcggtccgcc agggcttcat
     2761 ctcgccggag agcttcaact tcctcgaatc cgcgatcatc ctcgcgatcg tggtg
//
LOCUS       DASQWN010000160         2147 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_26116, whole genome shotgun sequence.
ACCESSION   DASQWN010000160 DASQWN010000000
VERSION     DASQWN010000160.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2147)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2147)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2147
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_26116"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1297
                     /locus_tag="VE686_02970"
     CDS             <1..1297
                     /locus_tag="VE686_02970"
                     /EC_number="1.2.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018645753.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0018478 - malonate-semialdehyde
                     dehydrogenase (acetylating) activity [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="CoA-acylating methylmalonate-semialdehyde
                     dehydrogenase"
                     /protein_id="HYY83449.1"
                     /translation="VMMRFLDVIAREMDSLAELLAREHGKTIPDAKGDIQRGVEVVEF
                     ACGIPHLLKGEYTEGAGPGIDVYSMRQPLGVVAGITPFNFPAMIPMWKFAPAIACGNA
                     FILKPSERDPGVPMRLAELMIEAGLPAGILNVVNGDKEAVDAILDDPDIRAVGFVGSS
                     SIAEYVYSRAAATGKRAQCFGGAKNHMIIMPDADMDQAVDALIGAGYGSAGERCMAVS
                     VAVPVGKATGDRLMDKLIPRVESLKIGPSTDPSADYGPLVTKQHLERVRDYVEIGIKE
                     GAKLAVDGRNFKMQGYENGFYMGGCLFDEVTSSMRIYKEEIFGPVLSVVRAKDYDEAL
                     RLPTEHEYGNGVAIFTRDGDAARDFASKVDVGMVGVNVPIPVPIAYYTFGGWKRSGFG
                     DLNQHGPDSIRFYTKTKTVTSRWPGGIKEGAEFVIPTMQ"
     gene            1494..>2147
                     /locus_tag="VE686_02975"
     CDS             1494..>2147
                     /locus_tag="VE686_02975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012496870.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016627 - oxidoreductase activity, acting
                     on the CH-CH group of donors [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase family protein"
                     /protein_id="HYY83450.1"
                     /translation="MTAFTLEDDQTAIRDMARDFAAERLAPKAVEWDQEKHFPVDVLR
                     EAAALGMGGVYVRDDVGGSGLSRLDAALIFEALASGCPSIAAYISIHNMSAWMIDAYG
                     SDEQRRQWLPKLCTMELLASYCLTEPGSGSDAAALRTRAVRDGDTYVLNGQKQFISGA
                     GAGDIYVVMARTGGEGPSGISTLVVPGDTPGLSLGANERKMGWNAQPTRAVIFEDARV
                     "
BASE COUNT          357 a          732 c          722 g          336 t
ORIGIN      
        1 cgtgatgatg cgatttctcg acgtgatcgc gcgcgagatg gacagcctcg ccgagcttct
       61 cgcccgcgag cacggcaaga ctatcccgga cgccaagggc gatatccagc gcggcgtcga
      121 ggtggtggag ttcgcgtgcg gcatcccgca tcttctgaag ggcgagtaca cggaaggcgc
      181 cggcccgggc atcgacgtct attccatgcg ccagcccctg ggagtcgtgg ccggcatcac
      241 gccgttcaac ttcccggcca tgatcccgat gtggaagttc gcgcccgcga tcgcctgcgg
      301 gaacgccttc atcctgaagc cgtcggagcg cgatcccggc gtgcccatgc gtctcgccga
      361 gctgatgatc gaagccggcc tgcccgccgg catcctcaac gtggtgaatg gggacaagga
      421 ggcggtcgac gccatcctcg acgatccgga catccgcgcc gtcggcttcg tcggctcgtc
      481 gtcgatcgcc gagtacgtct actcgcgcgc cgccgccacg ggtaagcgcg cgcagtgctt
      541 cggcggggcg aagaaccaca tgatcatcat gcccgacgcc gacatggacc aggccgtcga
      601 cgccctcatc ggggcgggct acggctcggc cggcgagcgc tgcatggccg tgtcggttgc
      661 ggtgccggtc ggcaaggcca cgggcgaccg gctcatggac aagctcatcc cgcgcgtcga
      721 gagcctgaag atcgggccgt caaccgaccc gtccgcagac tacggcccgc tggtgacgaa
      781 gcagcacctc gagcgggtgc gcgactacgt cgagatcggc atcaaggagg gcgcgaagct
      841 cgccgtcgac ggccggaact tcaagatgca gggctacgag aacggcttct acatgggcgg
      901 ttgcctgttc gacgaggtga cgtcgtccat gcgcatctac aaggaggaga tcttcggccc
      961 ggtgctctcc gtggtgcggg ccaaggacta cgacgaggcg ctgcggctgc cgaccgagca
     1021 cgagtacggc aacggcgtcg ccatcttcac ccgggacggc gatgcggcgc gcgatttcgc
     1081 ctcgaaggtc gacgtcggca tggtcggcgt caacgtcccg atccccgtgc cgatcgccta
     1141 ctacaccttc ggcggctgga agcgctccgg cttcggcgac ctcaaccagc acggccccga
     1201 ctcgatccgc ttctacacca agacgaagac cgtcacctcg cgctggcccg gcggcatcaa
     1261 ggaaggcgcc gagttcgtca tcccgaccat gcagtgagag gcccctccgg ctgccaaacc
     1321 tgcccggtcc cgcgacgcgg gaccagctcc ccgggcctgc gcatcatcat gttcgcacga
     1381 gaggacacgc tttttatgaa cggggcaaca tcatcatgaa actggccgtg cgccgtacgc
     1441 gcaaacccat ctcctaatcc acgcgtcgtg cgtctgtccc actggtatcc cgcatgaccg
     1501 cgttcaccct ggaagacgac cagaccgcga tccgcgacat ggcgcgtgac ttcgcggccg
     1561 agaggctggc cccgaaggcg gtagagtggg accaggagaa gcacttcccc gtcgacgtgc
     1621 tgcgtgaggc cgcagcgctc gggatgggcg gcgtctacgt gcgcgacgac gtcggcgggt
     1681 cgggcctgtc gcggctcgac gccgccctga tcttcgaggc gctggccagc ggctgcccgt
     1741 cgatcgcggc ctacatctcg atccacaaca tgtcggcatg gatgatcgac gcctacggct
     1801 cggacgagca gcgccggcag tggttgccga agctgtgcac catggagctg cttgcgagct
     1861 actgcctcac cgagcccggc tcgggctccg atgcggcggc gctgcggacg cgcgccgtgc
     1921 gcgacggcga tacttacgtg ctcaacggcc agaagcagtt catctcgggc gccggcgccg
     1981 gcgacatcta cgttgtcatg gcgcggacgg gcggcgaagg gccgtctggg atctcgacgc
     2041 tcgtcgtccc gggcgatacg ccgggcctgt cgctgggcgc caacgagcgc aagatgggct
     2101 ggaatgcgca gccgacccgg gcggtgatct tcgaggacgc ccgcgtc
//
LOCUS       DASQWN010000161         2043 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_620248, whole genome shotgun sequence.
ACCESSION   DASQWN010000161 DASQWN010000000
VERSION     DASQWN010000161.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2043)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2043)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2043
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_620248"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(42..470)
                     /locus_tag="VE686_02980"
     CDS             complement(42..470)
                     /locus_tag="VE686_02980"
                     /EC_number="3.1.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020185382.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0047617 - acyl-CoA hydrolase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PaaI family thioesterase"
                     /protein_id="HYY83451.1"
                     /translation="MSRHDGEAAPPFDPAAAGWEPVDDKGFLGLVGPTWRRVREDRIE
                     FAFRAEPKHANLRNVVQGGMLMTFADRALGRNSWRAAGGKPVATVEFNMQFVTAGKIG
                     EVFEIRPEIVRKTSSLVFIRGDVVCGTRTVATATGIWKIL"
     gene            complement(538..864)
                     /gene="trxA"
                     /locus_tag="VE686_02985"
     CDS             complement(538..864)
                     /gene="trxA"
                     /locus_tag="VE686_02985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018261395.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015035 - protein-disulfide reductase
                     activity [Evidence IEA];
                     GO_process: GO:0006662 - glycerol ether metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin TrxA"
                     /protein_id="HYY83452.1"
                     /translation="MATVKVTDSSFDTDVLKSSEPVVVDFWAEWCGPCRMIGPALEEI
                     AGEMQGKVKIAKVNVDENPGIASKLGIRSIPTLMLFKDGKLAGQKVGASPKGELSKWI
                     QQTTAA"
     gene            complement(960..>2043)
                     /locus_tag="VE686_02990"
     CDS             complement(960..>2043)
                     /locus_tag="VE686_02990"
                     /inference="COORDINATES: protein motif:HMM:NF024117.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="3'-5' exonuclease"
                     /protein_id="HYY83453.1"
                     /translation="VMTVHGAKGLEASLVIVVDGCNVYGPASALIPMSVGEDETVPVW
                     SPGKAADSAPIGAAREQCRLRELEEHNRLLYVAMTRAKDRLVIAPYRTASTGECPAEA
                     WCEMIRGRLVDVVGGRVHDDWPFPPDALRASAAPQPDGLPALTPQPAWLTRAAEAEPE
                     PLPPVRPSSALSAADAPARPRERTDNGLARQRGTLIHTLLERLPAVPAERRETVAQAY
                     VKARAPGLAEAARAGMVRDALAVLTHAALAPLFGPGSRAEASIVGSVHVAGEARPVAG
                     QIDRLAVLDDEVLVADFKTAVAPPAVDAPLAPAYVGQLGLYRALLQEIYPRHRIRAFL
                     IWTSGPSVRELDEAEMDAALALVRAA"
BASE COUNT          294 a          717 c          736 g          296 t
ORIGIN      
        1 cgatgccggg tgaggcagcc gcagggccgt tcagagccgt ttcacaggat cttccagatc
       61 cctgtcgcgg tggccacggt gcgggtgccg cagacgacgt cgccgcgaat gaacacgagc
      121 gaactcgtct tgcggacgat ctcggggcgg atctcgaaga cctcgccgat ctttcccgcc
      181 gtgacgaact gcatgttgaa ctcgaccgtg gcgacaggct tcccgccggc ggcgcgccag
      241 gagttccggc cgagcgcccg gtccgcgaac gtcatcagca tcccgccctg gacgacgttg
      301 cgcaaattcg cgtgcttcgg ctcggctcgg aaggcgaact cgatccggtc ctcgcgcacc
      361 cgccgccagg tcgggccaac aaggccgagg aagcccttgt cgtcgacggg ctcccatcca
      421 gcggcggccg gatcgaacgg cggtgccgcc tcgccatcgt ggcggctcat ggtcgtgctc
      481 ccctcatgca aaaggggccg caaggcccct tccaccaatc ctcgcgagag cgcccgatca
      541 ggcggccgtc gtctgctgga tccacttcga cagttcgccc tttggggaag cgccgacctt
      601 ctggcccgcg agcttgccgt ccttgaacag catcagcgtc gggatcgagc ggatgccgag
      661 cttcgaggcg atgccggggt tctcgtcgac attaaccttg gcgatcttca ccttgccctg
      721 catctcgccc gcgatctcct cgagcgcggg gccgatcatg cggcaggggc cgcaccactc
      781 ggcccagaag tcgaccacga cgggctcgga cgacttgagg acgtccgtat cgaagctcga
      841 atccgtcacc ttcacggtcg ccatggatca cctgcttggg gtggcgcgcg tcgcgccgtt
      901 tcgtgtcacc ggaacgtagg aacggccggt cggggggtca agcggagcgg ccccgcgcct
      961 cacgccgccc tgaccagcgc cagcgctgcg tccatctccg cctcgtcgag ctcgcgtacg
     1021 ctcgggccgg aggtccagat caggaaggcg cggatacggt ggcggggata aatctcctgc
     1081 agcagcgccc ggtagagccc gagctggccg acgtaggccg gcgccaatgg cgcgtcgacg
     1141 gcgggcggcg ccacggcggt cttgaagtcg gcgacgagga cctcgtcgtc gaggaccgcc
     1201 agccggtcga tctggcccgc cacgggccgc gcctcgccgg cgacatgcac cgagccgacg
     1261 atcgacgcct cggcgcgcga gcccggaccg aagagtggtg cgagcgcggc atgcgtcagc
     1321 acggcgagcg cgtcccgcac catcccggcg cgcgccgcct cggcgagacc gggcgcccgg
     1381 gccttcacgt aagcctgggc gacggtttcg cgccgctccg ccggcacggc gggcaggcgt
     1441 tcgaggaggg tgtgtatcaa ggttccgcgc tggcgcgcga ggccgttgtc ggtgcgctcg
     1501 cgcgggcggg ccggagcgtc ggcggccgag agtgcactcg agggccgcac cggcggcaaa
     1561 ggttccggct cggcctcggc cgcgcgcgtc agccacgccg gctgtggggt cagcgcgggc
     1621 aggccgtcgg gctgcggggc ggcgctggcc cgcagcgcgt cgggcgggaa gggccagtcg
     1681 tcgtgcacgc ggccgccgac cacgtcgacg aggcggccgc ggatcatctc gcaccaggcc
     1741 tcggcggggc actcgcccgt gctcgccgtc ctgtacggcg cgatgaccag ccggtccttg
     1801 gcgcgggtca tggcgacgta gaggaggcgg ttgtgctcct cgagctcgcg caggcggcat
     1861 tgctcccggg cagccccgat cggagccgaa tcggcggcct tgccgggcga ccagaccggg
     1921 acggtctcgt cctcgccgac gctcatcggg atgagagcgg aggcgggacc gtagacattg
     1981 cagccatcga cgacgatcac gagggaagcc tcgaggcctt tcgccccgtg cacggtcatg
     2041 acg
//
LOCUS       DASQWN010000162         2529 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_620278, whole genome shotgun sequence.
ACCESSION   DASQWN010000162 DASQWN010000000
VERSION     DASQWN010000162.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2529)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2529)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2529
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_620278"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..917
                     /gene="aroC"
                     /locus_tag="VE686_02995"
     CDS             <1..917
                     /gene="aroC"
                     /locus_tag="VE686_02995"
                     /EC_number="4.2.3.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009764816.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004107 - chorismate synthase activity
                     [Evidence IEA];
                     GO_process: GO:0009073 - aromatic amino acid family
                     biosynthetic process [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="chorismate synthase"
                     /protein_id="HYY83454.1"
                     /translation="KILSGTFPDESGQEVTTGTPIALLIENVDQRSKDYSDIRDKYRP
                     GHADYAYDVKYGLRDYRGGGRSSARETAARVAAGAIARKVVPGMVVRGALVQVGPHAI
                     DRANWDWDEIPRNPFFCPDAKAAALWEEYLDGIRKSGSSIGAVVEVVAEGVPPGLGAP
                     VYGKIDAELAAALMSINAVKGVEIGDGFASAQLTGEENADEMRPGNAGAPTFLSNHAG
                     GVLGGISTGQPLVCRFAVKPTSSILTPRLTVTRYGQPVDIMTKGRHDPCVGIRAVPVG
                     EAMVACVVADHYLRHRGQVGASRPWPFE"
     gene            948..2036
                     /gene="ribB"
                     /locus_tag="VE686_03000"
     CDS             948..2036
                     /gene="ribB"
                     /locus_tag="VE686_03000"
                     /EC_number="4.1.99.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003599298.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008686 -
                     3,4-dihydroxy-2-butanone-4-phosphate synthase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3,4-dihydroxy-2-butanone-4-phosphate synthase"
                     /protein_id="HYY83455.1"
                     /translation="MMTTSVTEAVEAFARGEIVIVTDDDDRENEGDLIVAASLCTTEK
                     MAFIIRNTCGIVCAPLTSAEARRLRLDPMVASNDAPLGTAFTVSVDTRHGLTTGISAE
                     QRTNTVRALANNNMGASDFVRPGHVFPLIAKDGGVLMRSGHTEAAVDLCRLAGLPAVG
                     VICELANDDGTVMKGPQILAFAEKHGLKRISVADLIAYRQSREKLVERIGTFSVKTEW
                     GEFTGYAYATPFDPVQHVALVYGSIGDGQGVLARLHRANVVADVFEGGKTLAAVMRRV
                     ARDGRGVLVYLRDGTAGVPLTTFGHSDEASESEAARTHEWREVGVGAQILRDLGVSSI
                     RNMATSSRSFVGLSGFGIEILGNEPLDP"
     gene            complement(2064..>2529)
                     /locus_tag="VE686_03005"
     CDS             complement(2064..>2529)
                     /locus_tag="VE686_03005"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY83456.1"
                     /translation="AAPRPETLSETGSVGVRPEPAPEPAAPAPAAAAPSSQKLAALPP
                     AERLHTRPAEAPAEPASAPQKLTGTWWPMACPKPKDRRSAVPMVLAENRARAGAASCT
                     FLKKTQAGAAWTVVAKCSDGHASWTANIRLVLDGKRLQWASERGTQTYQRCG"
BASE COUNT          372 a          919 c          869 g          369 t
ORIGIN      
        1 tgaagattct gtcgggcact ttcccggacg agagcggaca ggaggtcacc accggcacgc
       61 caattgcact gctgatcgag aacgtcgacc agcgctcgaa ggactattcc gacatccgcg
      121 acaagtaccg ccccggccac gcggactacg cctacgacgt gaagtacggc ctgcgcgact
      181 accgcggggg agggcgctcg tcggcgcgcg agacggcggc ccgagtcgcg gccggggcca
      241 tcgcccgcaa ggtggtgccc ggcatggtgg tccgcggcgc cctcgtccag gtcggcccac
      301 acgcgatcga ccgcgcgaac tgggactggg acgagatccc gcgcaaccca ttcttctgcc
      361 ctgatgcgaa ggcggccgcc ctctgggagg agtatctcga cggcatccgc aagagcggct
      421 cctccatcgg cgccgtggtc gaggtggtgg ccgagggcgt gccgccgggc ctcggcgctc
      481 ccgtctacgg caagatcgac gcggagctcg cggccgcgct gatgtcgatc aacgccgtca
      541 agggcgtcga gatcggcgac ggcttcgcgt cagcgcagct gaccggcgag gagaacgcgg
      601 acgagatgcg gcccggcaac gccggcgccc ccaccttcct gtcgaaccat gccggcgggg
      661 tcctcggcgg catttcgacg gggcagcccc tcgtgtgccg cttcgccgtc aagccgacct
      721 cgtcgattct gacgccccgc ctgaccgtga cccggtacgg gcaaccggtc gacatcatga
      781 ccaaagggcg gcacgacccc tgcgtcggca tcagggcagt tcccgtcgga gaggcgatgg
      841 tggcctgcgt cgtcgccgac cactatctac ggcaccgcgg ccaggtcggc gcgagccgcc
      901 cctggccgtt cgagtagctc catcatcatg accatcgcaa catcttcatc atgacgacct
      961 ccgtcaccga agccgtcgag gccttcgcgc ggggcgagat cgtcatcgtc accgacgacg
     1021 acgatcgcga gaacgagggc gacctcatcg tcgcggcctc gctctgcacc accgagaaga
     1081 tggcgttcat catccgcaac acctgcggca tcgtctgcgc gcccctgacg tcggcggagg
     1141 cgcggcgcct gcgcctcgac cccatggtgg cgtccaacga cgcgccgctc ggcacggcct
     1201 tcacggtctc ggtcgacacg cgccacggcc tgaccaccgg catttccgcc gagcagcgga
     1261 ccaacaccgt gcgggcgctc gcgaacaaca acatgggcgc gtccgacttc gtgcgccccg
     1321 gccacgtctt cccgctgatc gccaaggacg gcggtgtgct catgcgctca gggcacacgg
     1381 aggccgccgt cgacctctgc cggctcgccg ggctgcctgc cgtcggcgtc atctgtgagc
     1441 tcgccaacga cgacggcacc gtcatgaagg gcccgcagat cctggccttc gccgagaagc
     1501 acggcctcaa gcgcatctcg gtcgccgacc tcatcgccta ccgacagtcg cgcgaaaagc
     1561 ttgtcgagcg gatcgggacg ttctcggtca agaccgaatg gggcgagttc acggggtacg
     1621 cctacgcgac cccgttcgat ccggtgcagc acgtggccct cgtctacggc agcatcggtg
     1681 acggccaggg cgtgctcgcc cgcctgcacc gcgccaacgt cgtcgccgac gttttcgagg
     1741 gcgggaagac gctcgcggcg gtgatgcggc gcgtcgcgcg cgacggccga ggcgtcctcg
     1801 tctacctgcg cgacggcacc gccggcgtgc cgctgaccac cttcggccac agcgacgagg
     1861 ccagcgagtc ggaagcggcg cgcacccacg agtggcgcga ggtcggggtc ggcgcgcaga
     1921 tcctgcgcga cctgggcgtc agctcgatcc gcaacatggc gacgtcgtcg cgctcctttg
     1981 ttggtctgag cggcttcggg atcgaaatcc ttggcaacga gccgctcgac ccgtgagctg
     2041 accgccgcgc gctggccctt acgtcagccg cagcgctggt acgtctgagt cccgcgctcg
     2101 ctcgcccact gcaggcgctt gccgtcgagg acgagccgga tgttcgccgt ccaggaagcg
     2161 tgcccgtcag agcacttggc caccacggtc cacgccgcgc cggcctgcgt cttcttcagg
     2221 aaggtgcacg acgcggcgcc ggccctcgcg cgattctcgg ccagcaccat gggcacggcg
     2281 ctcctgcggt ccttgggctt cgggcatgcc atcggccacc aggtcccggt gagcttttgc
     2341 ggcgccgacg cgggctcggc gggagcctcg gccgggcgcg tgtgcagccg ctccgccggc
     2401 ggcagtgccg cgagcttctg tgatgaaggc gcggccgctg cgggcgcggg ggccgcgggc
     2461 tcgggcgccg gctcgggccg caccccgacg ctcccggtct ccgagagggt ctcggggcgg
     2521 ggtgccgcg
//
LOCUS       DASQWN010000163         4959 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_26273, whole genome shotgun sequence.
ACCESSION   DASQWN010000163 DASQWN010000000
VERSION     DASQWN010000163.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 4959)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4959)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4959
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_26273"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..413)
                     /locus_tag="VE686_03010"
     CDS             complement(<1..413)
                     /locus_tag="VE686_03010"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY83457.1"
                     /translation="MPSNAGVLPTWPELCDGVAAHCAGTPDGPVLLPYLDPRAGRLRR
                     AVPAALRAVARALPAGADLRRVVRASDADLSAFLVDQICRNADDTEEDQEGSADLMFR
                     RHNQLPCTAATLRRRVQAVRSRVGPESPILIVGDD"
     gene            complement(403..1011)
                     /locus_tag="VE686_03015"
     CDS             complement(403..1011)
                     /locus_tag="VE686_03015"
                     /inference="COORDINATES: protein motif:HMM:NF013933.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0006865 - amino acid transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LysE family transporter"
                     /protein_id="HYY83458.1"
                     /translation="MTFAAGFVGGVLSSMPFGPINLILVDLVSRRHFAKLLAFLAGVI
                     LGDTLVAAACLWGLVRADPDPHVALALGAGCAAILFVYAVSSWRTTPRIGVPSEPASI
                     ARSAALGFSFCFFNPLFALFWLSFIAGYRELFEVEAVPAPAFLSGLVVGDVVWFAAVG
                     AVALAVVRNRGERFLVRLRKATSVGILGCAIFLMAAVVRRAL"
     gene            complement(1008..1415)
                     /locus_tag="VE686_03020"
     CDS             complement(1008..1415)
                     /locus_tag="VE686_03020"
                     /inference="COORDINATES: protein motif:HMM:NF014705.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S-adenosylmethionine decarboxylase"
                     /protein_id="HYY83459.1"
                     /translation="MQTQGQHLLLDLWLAEEIESAKIESLYDLVRARFSVVSETVKEF
                     EPFGTTTVFILSESHFTLHTYPEHAYMSVDLYVCNFGIDLSAFAEEVKGLFKLHEAKG
                     TVFLRGVPGGGSAHATAYSSSYPAARMEEILAV"
     gene            complement(1496..2335)
                     /locus_tag="VE686_03025"
     CDS             complement(1496..2335)
                     /locus_tag="VE686_03025"
                     /inference="COORDINATES: protein motif:HMM:NF013088.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HYY83460.1"
                     /translation="MDIVVFGAMLASAFLHAVWNAWVKSRRDSNAAIAALVIGAGIPN
                     IAVIAALGWPAAPAWPWIACTVTLSIAALTLLGAAYREGDFAVAFPMIRGLIPVVLVV
                     AAVPLFGEAPTLFGTLGVACVSAGLLLIGWEAARRTRTVTVRGLAIIALAAAVTAASV
                     LTDAKGSRLGGNPVVYAATIAFLNGVVMAVLQALRGRRVDRMLVREWPITIFAALVSI
                     VSYQLYIWSLQQAPVALVSAMRETSMLFALLIALVILRERFGLWRWLAVGLMLGGLAL
                     MRL"
     gene            complement(2362..4527)
                     /locus_tag="VE686_03030"
     CDS             complement(2362..4527)
                     /locus_tag="VE686_03030"
                     /EC_number="3.6.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018045224.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003678 - DNA helicase activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA];
                     GO_process: GO:0032508 - DNA duplex unwinding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="primosomal protein N'"
                     /protein_id="HYY83461.1"
                     /translation="MSPSRIVDVLVPVAVDTAYSYALPNGLDLAAGDVVAVPLGTRET
                     VGVVWGVREGGAGNLKRVAGRLNTRPMSDAMRRFVDWIAWYTLAPKGSALAMALKLPD
                     LGRAEVPRVGVRLAGAAPKRMTPARRRVLEAAQGGLVHLKRELAAAAGVSMTVLDGLV
                     DEGTLEAVALAPEPVAEAPDPDFARTNLSEAQAEAAAVLARTVEEGAASVTLLEGVTG
                     SGKTEVYFEAVAQALRQGRQALILMPEIALTAQFLERFAKRFGVRPAAWHSGIAGRRR
                     ERLYAGIADGDVKVVVGARSALFLPYASLGLVVVDEEHEAAYKQEDGVHYNARDMAVV
                     RGRIEGCPVVLASATPSLETRVNVERGRYRRVDLPERFGGRALPHIRAVDLRRETMER
                     GRFIAPTLAYAVEDTVARGEQVLLFLNRRGYAPLTLCRACGHRYECPNCSAWLVEHRF
                     RRALVCHHCGHLERTPQACAECGSLDSLVSCGPGVERIAEEVAETFPDKRTIVLSSDF
                     PGGTERLRQELTAIANGEFDIVIGTQLVAKGHNFPMMTLVGVLDADIGLTSGDPRASE
                     RTFQLLQQVTGRAGRGEGTGRALVQTYQPEHPVIAALISGDAERFYAEEARAREGAGL
                     PPYGRLAALVISATEREQAEEHARALARVAEPPPGVTVLGPAEAPIVLIRGRYRFRLL
                     VKTEREVDLQGYLRAWMGRAPKARGSTKVAIDVDPQSFL"
     gene            4587..>4959
                     /locus_tag="VE686_03035"
     CDS             4587..>4959
                     /locus_tag="VE686_03035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012456499.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0015074 - DNA integration [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific integrase"
                     /protein_id="HYY83462.1"
                     /translation="MSRPLSAADLDAILPGAPDLRAQAIAWLEAMAKERRLSPKTVEA
                     YGRDLRQFLAFLGMHLGEPASIAAVIALKPRDVRTFLAARRAAGVESRSLMRQLAGLR
                     SFARHLEREGHGTASAFSAISS"
BASE COUNT          789 a         1735 c         1803 g          632 t
ORIGIN      
        1 tcgtcatcgc cgacgatcag gatcggggac tccgggccga cgcggcttcg caccgcctgg
       61 acccggcgcc gcagcgtcgc ggccgtgcag gggagctggt tgtgccttct gaacatcagg
      121 tcggcggagc cctcttggtc ctcttccgtg tcgtctgcgt tgcggcagat ctggtcgacc
      181 aggaaggcgc tcaggtccgc gtcgctcgca cgcaccacgc gcctgagatc ggcgcctgcg
      241 ggcagcgcgc gcgcaacggc gcgtagcgcc gctggaaccg ccctgcggag acgccccgct
      301 ctcggatcga gatacggaag gagcacgggt ccgtccggcg tgccggcgca gtgcgcggcg
      361 acgccgtcgc acagctcggg ccacgtcggc agcacgcccg cgttagaggg cacgcctcac
      421 cacggcagcc atgaggaaga tcgcgcagcc gagaataccc acggaggtcg ccttgcgcag
      481 gcgcacgagg aagcgctcgc cccggttccg taccacggcg agcgcgacgg cgccgacagc
      541 cgcgaaccag accacgtcgc cgacgacgag ccccgagagg aacgccggcg ccggcacggc
      601 ctcgacctcg aacagctcgc ggtagccggc gatgaacgag agccagaaca gggcaaagag
      661 cggattgaag aaacagaacg agaagccgag cgcggcgcta cgcgcgatcg aggccggctc
      721 gctgggcacg cctatgcgcg gggtcgtccg ccaggacgag acggcataga cgaagaggat
      781 ggcggcgcag ccggccccga gcgccagcgc gacgtgcgga tccggatcgg cacggacaag
      841 gccccacagg cacgccgccg cgacgagggt gtcgccgagg atcacgccgg ccaggaacgc
      901 gaggagcttg gcgaaatgcc gccgcgagac gagatcgacc aggatgaggt tgatcgggcc
      961 gaacggcatc gacgagagga ccccgccgac gaacccggcc gcgaacgtca tacggcgagg
     1021 atctcctcca tccgggccgc cgggtaggac gagctgtagg cggtcgcgtg ggccgagccg
     1081 ccgcccggca cgccccgcag gaacaccgtc cccttggcct catggagctt gaagaggccc
     1141 ttcacctctt cggcgaaggc cgagaggtcg atcccgaaat tgcacacata caggtccacg
     1201 ctcatgtagg cgtgctccgg ataggtgtgc agggtgaagt gcgattccga gaggatgaag
     1261 acggtcgtcg tgccgaacgg ctcgaactcc ttcaccgtct cgctcaccac cgagaagcgc
     1321 gcgcgcacga ggtcgtagag cgactcgatc ttagcgcttt cgatttcttc ggcgagccat
     1381 aggtcgagca acagatgctg gccctgggtc tgcatcgatg ctcctactcg cctactcttg
     1441 cgcgggattc cgtttatcgt aagcgcgtta acggagtgct ggcaacagca ccctctcaga
     1501 ggcgcatcag cgccaggccg ccgagcatga gccccacggc gagccagcgc cacaggccga
     1561 agcgctcgcg caggatcacg agcgcgatga gcagcgcgaa cagcatgctc gtctcccgca
     1621 tggcgctgac gagcgccacc ggcgcctgct gcagggacca gatgtagagc tggtacgaca
     1681 cgatggacac gagcgccgcg aagatggtga tgggccattc ccgcaccagc atgcggtcga
     1741 cccggcgccc gcgcagggcc tgcagcacgg ccatgacgac gccgttgagg aacgcgatgg
     1801 tggcggcata gacgacgggg ttgccgccga gccgcgagcc cttggcgtcg gtcagcaccg
     1861 acgccgcggt gacggcggcc gcgagcgcaa taatggcgag acccctcacg gtgacggtgc
     1921 gcgtccgtcg cgccgcctcc cagccgatga gcaggagccc cgccgagacg cacgccacgc
     1981 cgagcgtccc gaagagtgtc ggcgcctcgc cgaacagcgg cacggcggcg acgacgagca
     2041 cgacggggat gaggccgcgg atcatcggga acgcgacggc gaaatcgccc tcgcggtagg
     2101 ccgcgccgag aagcgtcagc gcggcgatgc tgagcgtgac cgtgcaggcg atccacggcc
     2161 acgccggcgc ggcgggccag cccagcgccg cgatgacggc aatgttggga atgccggcgc
     2221 cgatgacgag cgccgcgatg gcggcgttcg agtcccggcg cgacttcacc cacgcgttcc
     2281 agaccgcgtg caggaaggcg ctggcgagca tcgcgccgaa gacgacgatg tccaagggtg
     2341 aggtcctccg gccgcgtaag cctacaggaa gctttgcggg tcgacgtcga tggcgacctt
     2401 ggtgctgccc cgcgctttcg gcgcccggcc catccaggcc cgcaggtatc cctgcaggtc
     2461 gacctcgcgc tcggtcttga cgagcaggcg gaagcggtag cggccgcgga tcagcacgat
     2521 cggcgcctcg gccgggccga gcaccgtcac gcccggggga ggctcggcga cgcgggcaag
     2581 cgcgcgggcg tgctcctcgg cctgctcgcg ctccgtcgcg gagatcacga gggccgcgag
     2641 ccggccgtag ggcggcaggc ccgcaccctc ccgcgcccgc gcctcctcgg cgtagaaacg
     2701 ctcggcgtcg ccggagatca gggccgcgat gacggggtgc tcgggctggt acgtctgcac
     2761 gagcgcccgc ccggtgccct cgccgcgccc cgcgcggccg gtgacctgct gcagaagctg
     2821 gaaggtgcgc tccgaggcgc gcgggtcgcc ggaggtgagg ccgatgtcgg cgtcgagcac
     2881 gccgacgagg gtcatcatgg ggaagttgtg ccccttggcg acgagttgcg tgccgatgac
     2941 gatgtcgaac tcgccgttgg cgatcgccgt cagctcctgg cgcaggcgct cggtgccgcc
     3001 cgggaaatcg ctcgacaaga cgatggtgcg cttgtccggg aaggtctcgg cgacttcctc
     3061 ggcgatgcgc tcgacgccgg gaccgcagga gacgagggag tcgaggctgc cgcattcggc
     3121 gcaggcctgc ggcgtgcgct cgaggtgacc gcagtggtgg cacacgagcg cccggcggaa
     3181 gcggtgctcg acgagccagg ccgagcagtt cgggcattcg tagcggtggc cgcaggcccg
     3241 gcagagcgtc aggggcgcgt agccgcggcg gttgaggaag aggagcacct gctcaccgcg
     3301 ggccacggtg tcctcgacgg cgtaggcgag ggtcggggcg atgaagcggc cgcgctccat
     3361 ggtctcgcgg cgcagatcga cggcgcggat gtgcggcagc gcgcggccgc cgaagcgctc
     3421 gggcaggtcg acgcgccgat agcgcccgcg ctcgacgttg acgcgggtct cgagcgacgg
     3481 cgtcgcggag gcgaggacga cggggcaccc ctcgatgcgc ccgcgcacca ccgccatgtc
     3541 gcgcgcgttg tagtgcaccc cgtcctcctg cttgtaggcg gcctcgtgct cctcatcgac
     3601 gacgacgagg ccgaggctgg cataggggag gaacagcgcc gagcgcgcgc cgaccaccac
     3661 cttcacgtct ccgtcggcga tgccggcgta gaggcgctca cggcggcgcc cggcaatgcc
     3721 ggagtgccat gcggcggggc ggacgccaaa gcgcttggcg aagcgctcca ggaactgcgc
     3781 cgtgagcgcg atctcgggca tcaggatcag ggcctgccgg ccttgccgca gggcctgcgc
     3841 cacggcctcg aagtagacct cggtcttgcc cgagccggtg acgccctcga gcagcgtcac
     3901 ggaggctgct ccttcctcga cggtgcgcgc gaggaccgcg gcggcttcgg cttgcgcctc
     3961 gctcaggttc gtacgcgcga aatccgggtc gggcgcttcg gccacgggct cgggcgcgag
     4021 cgccacggcc tcgagcgtgc cttcgtcgac gaggccgtcg agcaccgtca tgctgacgcc
     4081 ggccgcggcc gcgagctcgc gcttcaggtg gacgagaccg ccttgcgccg cctcgagcac
     4141 gcggcgccgc gcgggcgtca tgcgcttcgg cgccgcgccg gcgaggcgca cgccgacgcg
     4201 cggcacctcg gcccggccga ggtccggcag cttcagcgcc atggcgagcg ccgagccctt
     4261 cggcgccagc gtgtaccagg cgatccagtc gacgaagcgc cgcatggcgt ccgacatggg
     4321 ccgcgtgttc agacgccccg cgacgcgctt gagattgcca gccccgccct cgcgcacgcc
     4381 ccagaccacg ccgaccgtct cgcgcgtccc gagcggcacc gcgacgacgt cgccggctgc
     4441 cagatcgagg ccgttcggca gcgcgtagct gtaggcggtg tcgaccgcca ccggcaccag
     4501 cacgtcgacg attcgggagg gagacattgg cgactgataa accaacgcgg gttagagtcg
     4561 gaaggcaaag cccctgaagg cgcccaatgt cccgtccgct ctccgccgcc gacctcgacg
     4621 ccatcctgcc cggcgcgccc gacctgcgag cccaggcgat cgcctggctc gaggcgatgg
     4681 caaaggagcg ccgcctgtcg ccgaagaccg tcgaggccta cggtcgcgac ctgcgccagt
     4741 tcctcgcctt ccttggcatg cacctcggcg aaccggcttc gatcgcggcc gtcatcgcgc
     4801 tgaagccgcg ggacgtgcgc accttcctgg cggcgcgacg ggcggcgggg gtcgagagcc
     4861 gctccctcat gcgccagctc gccggcctgc gctcgttcgc gcgccatctc gagcgcgagg
     4921 ggcatggcac cgcttcggcg ttttcggcga tctcgagcc
//
LOCUS       DASQWN010000164         3365 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1217238, whole genome shotgun sequence.
ACCESSION   DASQWN010000164 DASQWN010000000
VERSION     DASQWN010000164.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 3365)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3365)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3365
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1217238"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..632)
                     /locus_tag="VE686_03040"
     CDS             complement(<1..632)
                     /locus_tag="VE686_03040"
                     /inference="COORDINATES: protein motif:HMM:NF012334.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HYY83463.1"
                     /translation="MASRAAMITGGSSGIGLAIARALGQDDYAVTISARRPDKLEAAA
                     KQLKEEGIDVEAVPANMADEEDIKRLVAAHRERCGRLDVLINNAGIGIGAAVADMPTK
                     KLDLQLDVNLRGVYLMARETIPLLKEAGAEHGKALMVNTASIAGKHGQAWLSAYSATK
                     FGVVGLSQGLHKELSTDGIQVTALCPGFVATDMTDWVEGQVPKEEMIQPE"
     gene            719..1711
                     /locus_tag="VE686_03045"
     CDS             719..1711
                     /locus_tag="VE686_03045"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY83464.1"
                     /translation="MSSRRASAAVLLACALAVGGCGGGDDGQDGTSQTPPEARPDQFP
                     RAEGRTLAELRRDLPKGGPVLAPTVSRVVTGKNRLGFGLFTTARAQIADASAAIYVAP
                     AGGGEAVGPFVAHYESLAVKSPYLSESTSKDPDAAKTLYVAEVPFKKPGRYEVLGMAR
                     LDDRLVAATSAVPKLVVIREKSDPVPGPGDRPPAIHTPTRVDVAGDLTKIDTRNPPDD
                     MHEVDFADQLGKKPIVLLFATPLLCQSRVCGPVVDVAAQVEDQYRDQADFIHMEIFND
                     NEVAKGPRPQVGAFNLPSEPWVFTIDRHGKVAARIEGAFSVEELEAAVKKALQN"
     gene            1728..1800
                     /locus_tag="VE686_03050"
     tRNA            1728..1800
                     /locus_tag="VE686_03050"
                     /product="tRNA-Ile"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1761..1763,aa:Ile,seq:cat)
     gene            complement(2886..3278)
                     /locus_tag="VE686_03055"
     CDS             complement(2886..3278)
                     /locus_tag="VE686_03055"
                     /inference="COORDINATES: protein motif:HMM:NF024092.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nuclear transport factor 2 family protein"
                     /protein_id="HYY83465.1"
                     /translation="MEIVRQFIEAARSGDHAIEVFIAVSDPSMEHTRLPAASGPETYS
                     GHDGVRRWFTDMADLWREWRNEIEELVEVGPDTVAARVRFIAVGRDSGVPVEARLGLV
                     CVLSEGKVLRSRTYASGEEALEAVGLSE"
BASE COUNT          530 a         1167 c         1149 g          519 t
ORIGIN      
        1 tcctcgggct ggatcatctc ctccttcggc acctgaccct cgacccagtc ggtcatgtcg
       61 gtggccacga agcccgggca cagcgccgtc acctggatgc cgtccgtcga cagctccttg
      121 tggagccctt ggctgaggcc gacgacaccg aacttggtcg ccgagtaggc ggacagccag
      181 gcctggccgt gcttgccggc gatcgaagcc gtgttgacca tcagcgcctt gccgtgctcg
      241 gcgcccgcct ccttgagcag cgggatcgtc tcccgcgcca tcaggtagac cccgcgcagg
      301 ttcacgtcga gctggaggtc gagcttcttc gtcggcatgt ccgcgaccgc cgcgccgatc
      361 ccgatgccgg cgttgttgat cagcacgtcg aggcgtccgc agcgctcccg gtgcgcggcg
      421 accaggcgct tgatgtcctc ctcgtcggcc atgttggccg gcaccgcctc gacgtcgatg
      481 ccctcttcct tcagctgctt cgccgcagcc tccagcttgt cggggcggcg agcggagatc
      541 gtgacggcgt agtcgtcctg tccgagggcg cgggcgatgg caagcccgat gccgctcgag
      601 ccgccggtga tcattgcagc gcgggaagcc atggcgcgga agcgtatgcg aaccgggagt
      661 taaggatcgc cgtcgtcggc gtgcccgggg cggccgtctt ctagccttcg ccgccaacgt
      721 gagcagccgc cgcgcatccg ctgccgtgct cctcgcctgc gcgctggccg tcggcggctg
      781 cggaggcggc gacgacggcc aggacgggac gagccagacg ccgcccgagg cgcgccccga
      841 ccagttccct cgcgccgagg gccggacgct cgcggagctg cgccgcgacc tgcccaaggg
      901 cggcccggtg ctggccccga ccgtctcgcg tgtcgtgacc ggcaagaacc ggctcggctt
      961 cggcctgttc acgacggcgc gggcgcagat cgccgacgcg agcgccgcga tctacgtcgc
     1021 cccggccggc gggggcgagg ccgtggggcc gttcgtggcc cactacgagt cgctggcggt
     1081 caagtcgccg tacctgagcg agagcacttc gaaggatccg gacgcggcca agaccctcta
     1141 cgtcgcggag gtcccgttca agaagccggg caggtacgag gtgctcggga tggcgcgcct
     1201 cgacgaccgc ctcgtggccg cgacctcggc cgtgccgaag ctggtcgtca tccgtgagaa
     1261 gtccgacccc gtaccgggcc cgggcgacag gccgccggcg atccacacgc cgaccagggt
     1321 ggacgtggcc ggggacctga ccaagatcga cacccgcaac cccccggacg acatgcacga
     1381 ggtcgacttc gccgaccagc tcggcaagaa gccgatcgtg ctgctcttcg ccacgccgct
     1441 cctgtgccag agccgcgtct gcgggccggt ggtcgacgtg gcggcgcagg tcgaggacca
     1501 gtaccgcgac caggccgact tcatccacat ggagatcttc aacgacaacg aggtcgcgaa
     1561 gggcccgcgc ccccaggtgg gcgccttcaa cctgccctcg gagccgtggg tcttcacgat
     1621 cgacaggcac ggcaaggtgg ccgcgcgcat cgagggtgcc ttcagtgtcg aggagctgga
     1681 ggcagcggtg aagaaggcgc tgcaaaacta ggtaccttct ccgccgaggg ccggtagctc
     1741 agcggtcaga gcagcggact cataatccgt cggtcgatgg ttcgattcca tcccggccca
     1801 ttccctctgc gatagggacc cggagggacc ccaacggaca cacgtcccgg tttgtgccgc
     1861 taacggccga ttttcggcct gtcgtcgcgc cgcggcaccg gtcgccccaa agagcctttc
     1921 gggagcaaca cggaagcaag atggcgccgt ttcggtagcg ggaacggccc cggcgaacac
     1981 cgtccgctgt gaggtggccg cacggtagcc gcggcgacgg gctcagggtc gccggcctgc
     2041 atggcggccc gctccaccac gaatgcagtt ggcagcggga ggtaggccgc ttcaccaaga
     2101 cccaagcagg agcctcgaca cgacagaggc attagtgaga cgtgtcccgc tccgaccgta
     2161 taaggcgcgt cgcattccag cggcgcagct tgactagctc attcgctaag cgggctcgct
     2221 gagaggcgag tcggaacgtt cactgacaga ccgcgccggc cctgccccct tcgggggacc
     2281 aagtgggagc gcgagagtcc cgaacgcgaa ggaaaccgct ggcgagggtg gcccggatca
     2341 acgcgagcaa ttgcactcgg tggaaggtgg taacaggccg agcgatgacc acgcaggtgg
     2401 tcacggagat ccggtggtga aacgcatacc cggcaacccc aggtagacgg cagttcatcg
     2461 tgctgcttcc ccttgacagg ggggcagtac gtccgcaccc cgtttctctg gttccggcag
     2521 tcctccactg catgtgagga atgcggacag ccgttcgagc cgaatccgcg cggccgtcct
     2581 cgcaagttct gtgctgactg cgcggcgccg gcggctgctg ggcgtcggtg gagggagcgg
     2641 aagcccgagg aggtggcggc ctacaatgcg cgccgtcggg tggtaatcga gccgagggca
     2701 tgcatcgaat gcggccggga gttcgtgcct gcccgaagtg acggggcgat gtgcaccgat
     2761 cggtgtcgtg accgccaccg ccgcaggagg agcccgtctt tcatgaggaa gtacgcccgg
     2821 gggttcttct cgggctaggg gcctagcggc cggccacgcg tctgcttgcg agcgggcggc
     2881 ttcgcctact ccgacagccc cacggcttcg agggcttcct cgccactcgc gtacgtgcgg
     2941 cttcgcaaga ccttgccctc ggataacacg cacaccagcc cgagccgggc ctcgaccggg
     3001 acaccgctgt cccttccgac ggcgatgaag cgcacccgcg cggccaccgt gtccggcccg
     3061 acctccacga gctcttcgat ctcgtttcgc cactcccgcc agaggtcggc catgtcggtg
     3121 aaccagcggc ggacgccgtc atggccggaa tacgtttcgg gtccggacgc ggccggcaat
     3181 cgcgtgtgct ccatgctcgg gtccgagacc gcgatgaaca cctcaatcgc gtggtccccc
     3241 gagcgggccg cctcgatgaa ctggcgcacg atctccacgt tctgctgcga caccggctac
     3301 tccgacagcc ctacggcttc gagggcggcc tgaacctcgg cctggccaaa tcccaggatc
     3361 tccat
//
LOCUS       DASQWN010000165         6027 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_806660, whole genome shotgun sequence.
ACCESSION   DASQWN010000165 DASQWN010000000
VERSION     DASQWN010000165.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 6027)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6027)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6027
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_806660"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(104..1678)
                     /locus_tag="VE686_03060"
     CDS             complement(104..1678)
                     /locus_tag="VE686_03060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012330648.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HYY83466.1"
                     /translation="MTPAIRGLLAAGALTLLAGTAQAQTPAAAGPPKKGGTVQVVVTP
                     EPPGLMLGLVQNGPSQMVAGNITESLLRYDEKLNPKPGLAKSWEVSPDQKTYTFRLHE
                     NIKWHDGKPFTADDVVFSLDKFLRETHPRWRPIANTQVEKIEKVDDLTVRLTTKQPFG
                     PLLLMFEPGTTAMVPKHIYEGTDYRTNPMNNTPVGTGPMKFKEWKRGSYVHLVRNDEY
                     YLKDRPYLDEVYYQFIPDAAARAVSYETGKIDVLTGGAVEIFDVARLSKLPNTCVTTK
                     GWEMFAPHAWMSVNHRNGILGNKAFRQGMMHAIDREFGREVVWSGYGKVATGPVSSKT
                     KFYSADVPKYDYNPAKAKELIKQSGYKGEAIKMMPLPYGETWVRWAEAIKQNLEEVGV
                     KIEFVATDTPGWNQRVSNWDFDLTFNFLYQLGDPATGVARSYVSSNIAKGNPFGNVGG
                     YSNPEVDKLFAEAANAPEDKRQELYARVQKILVEELPVLWLLELDFPTVSRCNVKDLV
                     TTAIGVNDAMRDAWKQ"
     gene            complement(1792..2472)
                     /locus_tag="VE686_03065"
     CDS             complement(1792..2472)
                     /locus_tag="VE686_03065"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY83467.1"
                     /translation="MAFLRAFGMSAVAAGVLTLGVSSVPPAPAVRADAAAASASAPKA
                     SARIEIWNRPLAPIRADAAGAPSSASPTAPWSLFAAQPSASLVQARFVRAGSPAFQYG
                     TLAQTASGPEWQERELADVAVVDGRTLDAAGLRIRLSGLTLPPADEACRTLDGRIEAC
                     ATRAATQLELIIRHRKVTCRYQASPSGGADGSCRIGSSDLAERLVKTGYVRRLDAADA
                     AKGRVPPI"
     gene            2794..3117
                     /locus_tag="VE686_03070"
     CDS             2794..3117
                     /locus_tag="VE686_03070"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY83468.1"
                     /translation="MRQSATPSRIRAAAPRTVRLGAARPRRFHRLAWTVVLAASVAGT
                     AFVAAGILSPARAQTRAVETSESRVGSVRVVQDESQTLQASQGFVDLVVGHSGVAGVT
                     TGAGR"
     gene            3316..4482
                     /locus_tag="VE686_03075"
     CDS             3316..4482
                     /locus_tag="VE686_03075"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator receiver protein"
                     /protein_id="HYY83469.1"
                     /translation="MNLLPDPAGTSLPTIALVGADSPFLNSVAAALGSMRVITPAVLK
                     VPIEQALGRPELDAAAVIVVDIDSKRRESLVALQGLMARLGGRAPVIALTDSFDDGLA
                     RWFLQVRVADFLRKPVDAKEVLRACVRALRATSEMPGDQGQIFSFLGAAGGVGTTTLA
                     IETALLLLRDSKEENSTCLVDLDFRSGACVDYLDMEARLDIDEIGPHPERLDLQLLEV
                     MLNRHSSGLSLLAAKGHPAQAAPVEPAFVTRLLDLVSSRFENVVIDLPRSWERWTDQV
                     LLGSTRVYVVSDMTVPGLRLGRRLAAGIAARLPEVKPRVIVNRFEQQRLFSGGLRRAD
                     VERALEGFLEGTVTNNYKLVREAIDRGLMLDGIKASSNVSTDLKKIVLAQVDAA"
     gene            4793..>6027
                     /locus_tag="VE686_03080"
     CDS             4793..>6027
                     /locus_tag="VE686_03080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015317596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CpaF family protein"
                     /protein_id="HYY83470.1"
                     /translation="MVGESAAPATPNQKLLEAKVRLHKRLIEELNLGAVEKLPVDELR
                     REIHGMISGWVVAERLPLNAKELDGFVTEVMDEMTGLGPLEALLKDPSIADILINGHQ
                     NIFVERRGLLEPVPSLFKDEAHLMRIIQKIVSAVGRRVDESSPLCDARLLDGSRFNCA
                     IRPIGVDGPLVSIRKFSKSKLSLDKLVEVKALTPHMAEVLAAAVKARITSIVSGGTGS
                     GKTTMLNALSSYISHTERLITIEDAAELQLQQPHVARMETRPPNIEGKGEIRQRDLVK
                     NALRMRPERIILGECRGEEAFDMLQAMNTGHEGSMATVHANNPREAISRLEQMIGMAG
                     LPMSQLSIRGQISAAIRLIIQLQRLADGKRRVTSVAEVTGMEGEIIQMQEIFKYVRTG
                     TDADGTTQGHHVATGVRPR"
BASE COUNT          950 a         2095 c         1973 g         1009 t
ORIGIN      
        1 agcatcgctg ccgccgggaa agcgccgcgg tccgcgcctc cttctccagg ctcagtgtcg
       61 atcggtcccg ggctcacgct tggcgagcgc cgggccggcc gcgctactgc ttccacgcgt
      121 cccgcatcgc gtcgttgacg ccgatcgctg tcgtcacgag gtccttgacg ttgcagcgtg
      181 acaccgtcgg gaaatcgagc tccaggagcc acagcacggg caactcctcc acgaggatct
      241 tctgcacccg cgcgtagagc tcctggcgct tgtcctcggg cgcgttggcg gcctcggcga
      301 agagcttgtc gacctccggg ttcgagtagc cgccgacatt gccgaacggg ttgcccttgg
      361 cgatgttgga cgagacgtag gagcgcgcga cgccggtcgc cgggtcgccg agctgataga
      421 ggaagttgaa ggtgaggtcg aagtcccagt tcgagacgcg ctggttccag ccgggcgtgt
      481 cggtggcgac gaactcgatc ttgaccccca cctcctccaa gttctgcttg atggcctcgg
      541 cccagcgcac ccaggtctcg ccgtacggga gcggcatcat cttgatagcc tcgcccttgt
      601 agccggactg cttgatcagc tccttcgcct tggcggggtt gtagtcgtac ttgggcacgt
      661 cggccgaata gaacttggtc ttcgacgaga ccggccccgt cgccaccttg ccgtagccgg
      721 accacaccac ctcgcggccg aactcgcggt cgatggcgtg catcattccc tgacggaatg
      781 ccttgttgcc gaggatgccg ttacggtgat tgaccgacat ccaggcatgg ggtgcgaaca
      841 tctcccagcc tttggtcgtc acgcaggtgt tggggagctt ggagaggcgc gccacgtcga
      901 agatctcgac ggcgccgccc gtcagcacgt cgatcttgcc ggtctcgtac gataccgcgc
      961 gcgccgcggc gtcggggatg aactggtagt acacttcgtc gaggtaaggc cggtccttga
     1021 gatagtactc gtcgttgcgc accaggtgca cgtacgagcc ccgcttccac tccttgaact
     1081 tcatcgggcc ggtgccgacg ggcgtgttgt tcattgggtt cgtgcggtag tccgtccctt
     1141 cgtagatgtg cttcggcacc atggcggtcg tgccgggctc gaacatcagg agcagcgggc
     1201 cgaaaggctg cttcgtggtg aggcgcaccg tgaggtcgtc caccttctcg atcttctcga
     1261 cctgcgtgtt ggcgatcggg cgccagcgcg gatgcgtctc gcgcaggaac ttgtccaggg
     1321 agaataccac gtcgtcggcc gtgaacggct tgccgtcgtg ccacttgatg ttctcgtgca
     1381 ggcggaaagt gtaggtcttc tggtccggcg acacctccca gctcttggct aggcccggtt
     1441 taggattgag cttctcgtcg tagcgcagga gcgactcggt gatgttgccc gccaccatct
     1501 gactcgggcc gttctggacg aggccgagca tgagccccgg cggctccggc gtgacgacga
     1561 cctgcaccgt cccgcccttc ttcggcggcc ccgccgcggc cggcgtttgc gcctgcgccg
     1621 tgccggcgag caaggtgagc gcgcctgccg cgagaagtcc gcgaattgcc ggtgtcatga
     1681 tctttcctct ccccgaacga cgtgccgctc gcaagttccg ggccgcgcga agttcgcccg
     1741 gcgccacggc ggcgcatcag cgggagatta agacgggggc gacgccaagc gtcaaatcgg
     1801 tggcacccga cccttggcgg cgtcggccgc atcgagccgg cgcacgtagc cggtcttgac
     1861 gaggcgctcg gcgaggtcgc tcgagccgat gcggcagctg ccgtcggccc cgcccgacgg
     1921 agacgcctgg tagcggcagg tcaccttgcg atgccggatg atcagctcga gctgcgtcgc
     1981 cgcgcgtgtc gcacacgcct cgatgcgccc gtccagcgtg cgacaggcct cgtcggccgg
     2041 cggcagcgtc agcccggaga gccggatgcg caggccggcc gcatcgagcg tgcgaccgtc
     2101 gacgaccgcc acatcggcga gctctcgctc ctgccattcg ggccctgacg cggtctgcgc
     2161 cagggtgccg tattgaaagg caggcgaacc ggcgcgcacg aagcgcgcct gcacgaggct
     2221 tgccgacggc tgggccgcga acaggctcca tggggccgtt ggcgaggcgg acgagggcgc
     2281 gcccgctgcg tccgcccgaa tcggagcgag cggacggttc cagatctcga tccgggccga
     2341 ggccttgggt gccgacgcgc tggccgccgc cgcgtcggcg cgcaccgccg gtgctggcgg
     2401 gacggacgac acaccaagcg tgagcacgcc ggccgcgacg gcactcatgc cgaaggcgcg
     2461 aaggaaggcc atgctgcgac ttggccgagc acggcgcagg gcggtctcgc ccggcgcccg
     2521 agtcagccaa accgtttggt gcgtgcgaac agctgccatg acgcgacccc gcaagttctt
     2581 cgcacagtgg cagggacggc tctcgaaacc cgtcaaggcg aaaactacaa tcttcggcaa
     2641 tcgagcttca tcgttcggta agtatagcaa tcgcaaacgg cgccgaaaca attggttcac
     2701 gcaaatccga agtgttgaga taagttcacc cgcgattcac ggtgtgggcc gaccttgcgt
     2761 acatcgcccg atcagggctg caggaaggcc gtcttgcgcc agagcgccac cccgtcacgc
     2821 attcgcgccg ccgcaccgcg caccgtgagg ctcggcgctg ctcgccctag gcgcttccat
     2881 cggctcgcct ggacggtcgt gcttgccgca tccgttgccg gaacggcatt tgtcgccgca
     2941 ggcattctct cgcctgcccg cgcccaaacg cgtgccgtcg agaccagcga aagccgggtc
     3001 gggagcgtgc gggtggttca ggacgagtca cagactttgc aggcgagcca gggcttcgtc
     3061 gatctggtgg tcggccattc gggcgtggcc ggcgtaacca ccggcgcggg acgctgagcg
     3121 tctcggtccg tcgactgcga gcgcccgttt taagcccgaa ttaggagtgg ctgacgtagg
     3181 ctcctcgtcc ccgcggatgg ccctgagacc ccaggtgatc gcaatcgtcg agcgcacata
     3241 cctgttgcga ggctcccgcc gccgctacgc cgccttgctg cgctcccgta cgctcgcgag
     3301 acttcgaggg atcgcatgaa cctgctgccc gacccggccg gcacgagcct gcccaccatc
     3361 gccctcgtcg gggcggattc gccgttcctc aactccgtcg cggcggcact tggatccatg
     3421 cgggtgatca cacctgcggt cctcaaggtg ccgatcgagc aggcgctcgg ccggcccgag
     3481 ctcgatgcag ccgccgtgat cgtcgtcgac atcgactcga agcggcgcga gagcctcgtg
     3541 gcgcttcagg gcctgatggc ccgtcttggc ggccgagcgc ccgtgatcgc gctgacggac
     3601 tccttcgacg acgggctcgc gcgctggttc ctgcaggtca gggtggcgga cttcctgcgc
     3661 aaacccgtgg atgccaagga agtcctgcgc gcctgcgtgc gcgccctgcg ggccacgagc
     3721 gagatgccgg gcgaccaggg gcagatcttc tcgttcctcg gcgccgcggg cggcgtcggc
     3781 accaccacgc tcgccatcga gacggcgctg ctcctcttgc gcgactcgaa ggaagagaac
     3841 tcgacctgcc tggtcgatct cgatttccgc agcggcgcct gcgtcgacta cctcgacatg
     3901 gaggcacggc tcgatatcga cgagatcgga ccgcaccctg agcgcctcga cctgcaactc
     3961 ctcgaggtca tgctgaaccg gcattcctcg ggcctgtcgc tcctcgccgc caaagggcac
     4021 ccggcccagg ccgcccccgt ggagccggcc ttcgtgacgc gccttctcga cctggtatcg
     4081 tcgcggtttg aaaatgtcgt catcgacctg ccgcgcagct gggagcgttg gaccgaccag
     4141 gtgctgctcg gctcgacccg cgtctacgtc gtctccgaca tgaccgtgcc gggcctgcgc
     4201 ctcgggcgcc gccttgccgc cggcatcgcg gcacggctcc ccgaggtcaa gccgcgcgtc
     4261 atcgtcaatc gcttcgagca gcagcgcctt ttcagcggcg gcctgcggcg cgccgacgtc
     4321 gagcgggcgc tcgagggttt tctcgagggc accgtcacca acaattacaa gctcgtgcgc
     4381 gaggcgatcg accgcggact catgctcgac ggcatcaagg cgtcgagcaa cgtctcgacc
     4441 gatctcaaaa agatcgtgct ggcgcaggtc gacgccgctt gaagggcgtg ccgcggagat
     4501 cgcggctcac ttgcagacaa tttgagggat cgtccaagcc ccgcttttac gcgggtcggg
     4561 taccgtgaac gcggtcttcc ccgaggcttc tagtcgaagc cgaaaccctc gaagtttcaa
     4621 catgctcggt cgcttctccg cccgtctggc cccgcccctg cccgaggttc tgccgccgcc
     4681 cccgcccatc ccggcggatg tcgaagcgtc agtgccgggc gacgccgcgg tgcccgacgg
     4741 ggacgcctct ccgccccccc cagcgcaggc cgctggcccg acgctcctga gcatggtggg
     4801 cgagtccgcc gcccctgcga caccgaacca gaaactgctc gaggccaagg tgcggctgca
     4861 caagcgcctc atcgaggaac tgaacctcgg cgccgtcgag aagcttccgg tcgacgagct
     4921 gcggcgcgag atccacggca tgatctccgg ctgggttgtc gccgaacgcc tgcccctcaa
     4981 cgccaaggag ctcgacggct tcgttaccga ggtcatggac gagatgacgg gcctcggccc
     5041 gctcgaggcc ctgctcaagg acccgagcat cgccgacatc ctcatcaacg ggcaccagaa
     5101 catcttcgtc gagcgccgcg gcctgctcga gccggtgccg tctctgttca aggacgaggc
     5161 gcatctgatg cgcatcatcc agaagatcgt ctcggcggtc ggccggcgcg tcgacgagtc
     5221 gagcccgctg tgcgacgccc gccttctcga cgggtcgcgc ttcaactgcg ccatccgccc
     5281 catcggcgtc gacggaccgc tcgtttcgat ccgcaagttc tcgaagtcga agctctccct
     5341 cgacaagctc gtcgaggtga aggccctgac gccgcacatg gcggaggtgc tcgcggccgc
     5401 cgtgaaagcg cgcatcacct ccatcgtctc gggcggcacg gggtccggca agacgaccat
     5461 gctgaacgcg ttgtcgtcct acatctccca tacggagcgc ctgatcacca tcgaggacgc
     5521 cgccgagctg cagctgcagc agccccacgt cgcccggatg gagacccgcc cgcccaacat
     5581 cgaaggcaag ggcgagatcc ggcagcgcga tctcgtcaag aacgccctgc gcatgcggcc
     5641 ggagcgcatc atcctcggcg agtgccgggg cgaggaagcc ttcgacatgc tccaggccat
     5701 gaacaccggc cacgagggct cgatggcgac ggtccacgcc aacaacccgc gcgaggcaat
     5761 ctcccgtctc gagcagatga tcggcatggc cggcctaccc atgagccagc tgtcgatccg
     5821 tggccagatc tcggcggcca tccggctcat catccagctg cagcggctcg ccgacggcaa
     5881 acgccgcgtg acctccgtcg ccgaggtcac cggcatggaa ggcgagatca tccagatgca
     5941 ggagatcttt aaatacgtgc gcaccggcac cgacgccgac ggcacgacgc aaggacatca
     6001 cgtcgcgacc ggcgtccgtc cccgctt
//
LOCUS       DASQWN010000166         2962 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_211206, whole genome shotgun sequence.
ACCESSION   DASQWN010000166 DASQWN010000000
VERSION     DASQWN010000166.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2962)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2962)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2962
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_211206"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..526
                     /locus_tag="VE686_03085"
     CDS             <1..526
                     /locus_tag="VE686_03085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018320471.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="TRAP transporter large permease subunit"
                     /protein_id="HYY83471.1"
                     /translation="WWSGTLNWASFRDSLLSATRLSGMIMLILSGAAFTTAAMAYTGI
                     PAALAAWVEAQHLSPYVLIVALTVMYIILGCLIDGISMIVLTVVVVLPMVKQAGFDLV
                     WFGVYLIILVEMAQITPPVGFNLFVLQNMSGRDSFTVAKAAFPFFLLLNVAVVIITMF
                     PQTALLLPRLAFSE"
     gene            564..1553
                     /locus_tag="VE686_03090"
     CDS             564..1553
                     /locus_tag="VE686_03090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009490784.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TRAP transporter substrate-binding protein"
                     /protein_id="HYY83472.1"
                     /translation="MKPITRLALGLAGALALAAPATAQTKWNLPGAYPQDNPHTENLT
                     LFAKDVADATGGKLQITVHPGASLFKAPDIKRAVQTGQAQMGEVLISNHENEDPIYGL
                     GVVPFLATSYDQAKKLWDAQKSAVEKKLATQGIMLLFAVPWAPQGLYAKKDINTLEDL
                     KGAKWRAYNVGTSRIAELVGAQAVTVQAAELPQALATGVVNAFITSGATGYDAKVWES
                     LTHFYDVQAWIPKNLTFVNTAAFNALDKATQEAILKAAATAEERGWKIWREKSTWYLD
                     QLKAKGMKVQPPGPELAAGFRKLGEQLTADWLKKAGAEGQAIVEAYRKSAGTQ"
     gene            complement(1647..2069)
                     /locus_tag="VE686_03095"
     CDS             complement(1647..2069)
                     /locus_tag="VE686_03095"
                     /EC_number="1.11.1.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015684566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005829 - cytosol [Evidence IEA];
                     GO_function: GO:0004601 - peroxidase activity [Evidence
                     IEA];
                     GO_function: GO:0051920 - peroxiredoxin activity [Evidence
                     IEA];
                     GO_process: GO:0006972 - hyperosmotic response [Evidence
                     IEA];
                     GO_process: GO:0006979 - response to oxidative stress
                     [Evidence IEA];
                     GO_process: GO:0033194 - response to hydroperoxide
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="OsmC family protein"
                     /protein_id="HYY83473.1"
                     /translation="MVRKARAAWRGTGKDGNGDLSTDSGVLSSAPYSFKTRFETERGT
                     NPEELIAAAHAGCFTMALAFQLQGAGFTPTELSTEAAVSVEKQEQGFAITKSALTLRA
                     QVPGIDSAKFEELARAAEKNCPVSKVLNAEITMSFTLG"
     gene            complement(2152..2697)
                     /locus_tag="VE686_03100"
     CDS             complement(2152..2697)
                     /locus_tag="VE686_03100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009490788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006282 - regulation of DNA repair
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RecX family transcriptional regulator"
                     /protein_id="HYY83474.1"
                     /translation="MTEPDRDGGRLKRPVPRAVTPAYLDRAALAYLERFASSAQNLAR
                     VLKRKVERRCRMRGEDPAPFLALIGDVVARAVRGGLVDDRRYADGRVASLRRRGGSAR
                     VIGAKLAAKGVARDTVAAALVDADDDEMAAAHALARRKRLGPYRTGDRAAFREKDLAA
                     FARAGFGFAIARSIVDEVTET"
BASE COUNT          501 a         1012 c          947 g          502 t
ORIGIN      
        1 gtggtggtca ggaaccctga actgggcctc gttccgcgac agtctcctct cggcgacgcg
       61 gctctccggc atgatcatgc tgatcctctc cggtgccgcc ttcacgaccg cggcaatggc
      121 ctatacgggg atccctgccg cactcgccgc ctgggtcgag gcgcagcacc tctcgccgta
      181 cgtgctgatc gtggcgctga cggtcatgta catcatcctc ggctgcctca tcgacgggat
      241 ctcgatgatc gtgctcaccg tcgtcgtggt cctgccgatg gtgaagcagg cgggtttcga
      301 tctcgtgtgg ttcggcgttt acctcatcat cctcgtcgag atggcgcaga tcacgccgcc
      361 cgtcggcttc aacctcttcg ttctccagaa catgagcggg cgcgacagct tcacggtcgc
      421 gaaggcggcg ttcccgttct tcctcctgct caacgtcgcc gtcgtcatca tcaccatgtt
      481 tccgcaaaca gcgctgctct tgccacggct tgccttctcg gagtgagatg acggccatca
      541 cgaaaaaggg gagtggaacc gagatgaagc cgatcacccg tcttgcgctg ggccttgccg
      601 gcgcgcttgc actggccgcg ccggcaacgg cgcagacgaa gtggaacctg ccgggcgcct
      661 acccgcagga caacccgcat acagagaacc tgacgctctt cgccaaggac gtggcagacg
      721 cgaccggcgg aaagctgcag atcaccgtcc accctggtgc ctcgctcttc aaggcgccgg
      781 acatcaagcg tgccgtccag acaggccagg cgcagatggg cgaggtgctg atctcgaacc
      841 acgagaacga ggatccgatc tacggcctgg gcgtggtgcc gttcctggcg acctcgtacg
      901 atcaggcgaa gaagctctgg gacgcacaga agtcggcagt cgaaaagaag ctcgccaccc
      961 agggcatcat gctcctgttc gccgtgccat gggcgccgca gggcctctac gccaagaagg
     1021 acatcaacac gctcgaggat ctgaagggag ccaagtggcg ggcctataac gtcggcacct
     1081 cgcgcatcgc tgagctggtc ggcgcacagg ccgttaccgt ccaagcggca gagctgccgc
     1141 aggcccttgc gaccggtgtc gtcaacgcct tcatcacctc gggcgcgacc gggtacgacg
     1201 caaaggtctg ggagtcgctg acccacttct acgacgtgca ggcctggatc ccgaagaacc
     1261 tcaccttcgt caacacggcg gccttcaacg ccctcgacaa ggcgacgcag gaggccatcc
     1321 tcaaggctgc ggcaaccgcc gaggagcgcg gctggaaaat ctggcgcgag aagtcgacct
     1381 ggtacctcga ccagctcaag gccaagggca tgaaggtcca gccccccggc cccgagctcg
     1441 cggcgggctt ccgcaagctc ggcgagcagc tcaccgccga ttggctcaag aaggcgggtg
     1501 ctgaagggca ggctatcgtc gaggcatacc gcaagtccgc cggaacgcag taagtcgggc
     1561 tcccgacgcc ctccatcgct ggaaagccgc ccctcagggc ggctttcttg cgttcgagct
     1621 cggcgtctcc gaccgttcgg gcgaactcag cccagcgtga agctcatcgt gatctcggcg
     1681 ttgagcacct tcgacacggg acagtttttc tcggccgcgc gggcgagctc ctcgaacttc
     1741 gcgctgtcga tgcccggcac ctgggcgcga agcgtgagcg ccgacttggt gatggcgaag
     1801 ccttgctcct gcttctctac cgacacggcc gcttcggtcg acagctcggt cggggtgaaa
     1861 ccggcgccct gaagctggaa ggcgagcgcc atggtgaagc agcccgcgtg tgccgccgca
     1921 atcaactcct cgggattggt cccgcgctca gtctcgaagc gggtcttgaa agaatacgga
     1981 gcggacgaaa ggacgccgga atccgtcgaa agatcgccgt tgccgtcctt gccggtgccc
     2041 cgccatgctg cgcgtgcttt gcgaaccatg atctcaactc cccgggtgca ggaacgcccc
     2101 gtcgccgtga tctaggcacc gaagccgccg tttgcagcgc ctcacgtgcg ctcacgtctc
     2161 ggtgacctca tcgacgatgc tccgcgctat ggcgaacccg aatccggctc tcgcgaatgc
     2221 ggccaagtcc ttctcgcgga aggcggcgcg gtcgcctgtc cggtacggcc cgagcctctt
     2281 gcgccgggca agcgcgtgcg cggctgccat ctcgtcatcg tcggcgtcta cgagtgccgc
     2341 cgccacggtg tctcgggcca cgcccttggc ggcgagcttc gcaccgatga cccgcgccga
     2401 gccgccgcgg cgtcgcaagc tcgccacgcg accgtccgcg taacgacggt cgtccacgag
     2461 gccgccgcga accgcgcggg cgacgacatc gccgatgagt gccaggaacg gcgcggggtc
     2521 ctccccgcgc atccggcacc ggcgctcgac cttgcgcttg agcacgcgag caaggttctg
     2581 cgccgacgag gcgaagcgct ccagataggc aagcgccgcg cggtcgaggt aggctggcgt
     2641 gaccgcgcgg ggcaccggtc gcttgaggcg accgccgtcc ctatccggct ccgtcatggg
     2701 cggcgctccc ttgggcgcga tgcttggccg cgcaacgatg cggcgcttca acggtttcta
     2761 cagctctgga ggcgaaagtg ctcgcgtgaa cgaaagcttc atcgatagga tcttgcggac
     2821 cgatcgggtc tatcctctgg cactcctcgg cctggtcgtg gtcggctgcc tcgccgccct
     2881 ggggtactgg tacatctcgg caccgaccca gtacgtggtg gccgtggcgc cccgcgaagg
     2941 tcccgaggcg aagctcctaa ac
//
LOCUS       DASQWN010000167         2354 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1118040, whole genome shotgun sequence.
ACCESSION   DASQWN010000167 DASQWN010000000
VERSION     DASQWN010000167.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2354)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2354)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2354
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1118040"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..798
                     /locus_tag="VE686_03105"
     CDS             <1..798
                     /locus_tag="VE686_03105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014490761.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-binding protein"
                     /protein_id="HYY83475.1"
                     /translation="VTGGTGHLGRAVVAGLTASGHQVRVLARRPGNDPGIEWRQGDLA
                     TGEGVAAAATGIEAIVHAATNSPGAQRGGLRPVDFIRSPTDVDIDGTKALLAAAENAA
                     VEHFVHVSIVGLPHMARLPYSRVKLSAEGLVRTSAVPWSIVRATGFYWLLDRMLARMV
                     KRPPVFLPAKVRMQPVDSDEFAALIVECLSDGRRGEREDFAGPEQLTLHELAEEYLAA
                     RGLHRRIRNVPLPRRLEDTLTAGNTSPQGRRGTTTWAEWLQRNPSIP"
     gene            768..1136
                     /locus_tag="VE686_03110"
     CDS             768..1136
                     /locus_tag="VE686_03110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009027552.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metalloregulator ArsR/SmtB family transcription
                     factor"
                     /protein_id="HYY83476.1"
                     /translation="MAPAESEHTVSANLPFVPAYQRAAWTALGDPTRRAILERLAERP
                     CAVGELAERLPVSRPAVSQHLKVLKQARLVIDRAEGTRRIYRVDSEGLAALRADLDRF
                     WGGALAAYKAAVEQSSQEDQ"
     gene            1133..1627
                     /locus_tag="VE686_03115"
     CDS             1133..1627
                     /locus_tag="VE686_03115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015314541.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SRPBCC family protein"
                     /protein_id="HYY83477.1"
                     /translation="MSTDAGTTVRHSVVVEAPIEQAFHVFTDRFGSFKPREHNMLEVD
                     IAETVFEPRAGGHLYDRGVDGSECRWARVLAYDPPERVVFSWDITPHWQIETDPDRTS
                     EVEVRFIAETPGRTRVELEHRNLDRHGEGWEGVREGVDSDGGWPLYLDRYAAVVGEEE
                     PWHR"
     gene            1615..2073
                     /locus_tag="VE686_03120"
     CDS             1615..2073
                     /locus_tag="VE686_03120"
                     /inference="COORDINATES: protein motif:HMM:NF022072.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SRPBCC family protein"
                     /protein_id="HYY83478.1"
                     /translation="MAPLTTSVDVARTPEDVFAYVTDPARFPEWQANVVDGRMDGKGP
                     FRPGDRCVTVRRIGGAKRTVTSEITHIDPPRTWGVRGIDGPIRATVAVIVEPLDGAER
                     SRLTIDLDFEGHGIGKPLVSLVVRRQARQEMPQNLGRLKQRLETAAPSRA"
     gene            2133..>2354
                     /locus_tag="VE686_03125"
     CDS             2133..>2354
                     /locus_tag="VE686_03125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019860053.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding protein"
                     /protein_id="HYY83479.1"
                     /translation="MGELRGSLAGDALADGDAAYDEARGCFNAMIDRRPAVIARCRGA
                     GDVATAFDFARAHELEVAVRGGGHNPAGHC"
BASE COUNT          368 a          803 c          847 g          336 t
ORIGIN      
        1 gtaaccggtg gtaccggcca tctcggccgc gcggtggtcg cgggcctgac ggcgagcggc
       61 caccaggtcc gcgtgctcgc gcgccggccg ggcaacgacc cgggcatcga gtggcgacaa
      121 ggcgatcttg cgacgggcga gggcgtcgcc gccgctgcca ccggtatcga ggcgatcgtc
      181 cacgccgcaa cgaattcgcc gggagcgcaa cgcggaggcc tccgcccggt cgacttcatc
      241 cggtcaccga ccgacgtgga catcgatggg acgaaagcgc tgctggcagc ggccgagaac
      301 gcggccgtcg agcacttcgt ccacgtctcg atcgtcggcc tgccgcacat ggcacgcctt
      361 ccgtactcgc gcgtgaagct gtcggcggag gggctcgtga gaacgtccgc cgtcccgtgg
      421 tcgatcgtgc gtgcgaccgg cttctactgg ctgctcgacc ggatgctggc caggatggtc
      481 aagcgcccgc ccgtcttcct gcccgccaag gtgcgcatgc agcccgtcga ctccgacgag
      541 ttcgccgcac tcatcgtcga gtgtctcagc gacgggcgcc gcggagaacg cgaagacttc
      601 gccggaccgg aacagctgac tctgcacgag ctcgccgagg agtatctggc cgccaggggt
      661 ctccatcggc ggatccggaa cgtgccccta ccgcgacggc tcgaggacac cctgacggca
      721 ggaaacacct cgccgcaagg tcggcgcggc acgacgacct gggccgaatg gctccagcgg
      781 aatccgagca taccgtaagt gctaacttac cgttcgtgcc cgcttaccaa agagccgcgt
      841 ggacggcgct cggcgatcca acgcggcgag ccatcttgga gcggctcgcc gagcgcccgt
      901 gcgcggtcgg cgagctcgcg gagaggctcc cggtcagccg cccggcggtg tcgcagcacc
      961 tcaaggtgct caagcaggcg cggctcgtga tcgaccgagc cgagggcacg cgccggatct
     1021 accgggtcga ctcggagggt ctcgccgcgc tgcgcgccga cctcgaccgg ttctggggtg
     1081 gggcgctggc ggcctacaag gccgcggtcg agcaatcgag ccaggaggat caatgagcac
     1141 cgacgcaggt accaccgtcc gccactcggt cgtcgtcgag gcgccgatcg agcaggcgtt
     1201 ccacgttttc accgaccgct tcggcagctt caagccgcgt gagcacaaca tgctcgaggt
     1261 ggacatcgcg gagaccgtct tcgagccgcg cgccgggggc catctctacg accgcggtgt
     1321 cgatggcagc gagtgccgct gggcgagggt gcttgcctac gacccgccgg aacgagtcgt
     1381 cttcagctgg gacatcaccc cgcactggca gatcgagacc gatcccgaca ggaccagcga
     1441 ggtcgaggtg cgtttcatcg ccgagacgcc cgggcgcacc agggtcgagc tcgagcaccg
     1501 caatctcgat cggcacgggg agggctggga gggcgttcgc gagggcgtcg acagcgatgg
     1561 gggctggccg ctctacctcg accggtacgc cgcggtggtc ggcgaggagg agccatggca
     1621 ccgttgacca cctccgtcga tgtcgcgcgc acaccggaag atgtgttcgc gtacgtcacg
     1681 gatccggcgc gctttcccga gtggcaggcc aatgtcgttg acgggcgcat ggacggtaag
     1741 ggtccgttcc ggccgggcga caggtgcgtg accgttcgcc gcatcggagg ggcgaagcgg
     1801 accgtgacct ccgagatcac gcacatcgat ccgccgcgca cctggggcgt ccgcgggatc
     1861 gacggcccga tccgggcgac cgtcgccgtg atcgtggagc cgcttgacgg ggcggagcga
     1921 tcgcggctga ccatcgatct cgacttcgag gggcacggga tcggcaagcc cctggtctcc
     1981 ctcgtcgtcc gcaggcaggc tcgccaggag atgccgcaaa accttgggcg actgaagcag
     2041 cgtctcgaga cggccgcgcc gtcgcgcgcg tgagcctcct gccccggaaa gccggtccgt
     2101 agatgcccga cgccgaacgc gtcagggaag gcttgggcga gctgcgcggt tcgctcgccg
     2161 gcgacgcgct tgcggacggc gatgccgcct acgacgaagc tcgcgggtgt ttcaacgcga
     2221 tgatcgatcg ccgcccggcg gtgatcgcgc gttgccgcgg cgcgggcgac gtggcgacag
     2281 cgttcgactt cgcgcgggcg cacgagctcg aggtcgctgt gcgcggcggc gggcacaacc
     2341 ccgccgggca ctgc
//
LOCUS       DASQWN010000168         5310 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_211331, whole genome shotgun sequence.
ACCESSION   DASQWN010000168 DASQWN010000000
VERSION     DASQWN010000168.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 5310)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5310)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5310
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_211331"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..396
                     /locus_tag="VE686_03130"
     CDS             <1..396
                     /locus_tag="VE686_03130"
                     /inference="COORDINATES: protein motif:HMM:NF020918.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phasin family protein"
                     /protein_id="HYY83480.1"
                     /translation="IPIAQAALAPFSVALESGAEQARNAVGRARDTRESLQQAVAHSA
                     AAAANGMLELNGKVIDLLRAQSDAAFELWRSTVTAGSLSEAVRVQTSGIRQAYEATTT
                     HAKDVAEAATRAIGDTVKPLQSAMARTPR"
     gene            508..584
                     /locus_tag="VE686_03135"
     tRNA            508..584
                     /locus_tag="VE686_03135"
                     /product="tRNA-His"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:542..544,aa:His,seq:gtg)
     gene            659..1276
                     /locus_tag="VE686_03140"
     CDS             659..1276
                     /locus_tag="VE686_03140"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY83481.1"
                     /translation="MFLLSPARLDGERARLLFQPVTMFPAAAALRSPEGASIGEVFSF
                     LSGLYFRGKLAYADAFARPPKGLEGGAFVITTNRGLVPASTRITLDDLARLAEGSIDL
                     SSQDFHGPLRRDADVLAGALGPGGASVLLGSIATAKYVDVLLSVFDGRLLFPAEFVGR
                     GDMSRGGLMLRCVDEHAELTYVPVRGAVRRGMRPPKLPPRRSTSG"
     gene            1340..3142
                     /locus_tag="VE686_03145"
     CDS             1340..3142
                     /locus_tag="VE686_03145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003540527.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005247 - voltage-gated chloride channel
                     activity [Evidence IEA];
                     GO_process: GO:0006821 - chloride transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="chloride channel protein"
                     /protein_id="HYY83482.1"
                     /translation="MLLSAREMHRRLITESPLMQAPERLRALVRASEIGLVLVALAIG
                     CVSGVLVSAIGEVAQAMHELFFSLPREQRLSGATGLWWVAVLLVPTLGGALLGVVLYV
                     GARLRKRAAVDPIEANALHGGRMSLRDSVLVAFQNLISNGFGASVGLEAGYTQICAGV
                     ASRLGLSFEMRRADLRTLVGCGAAGAIAAAFNAPLTGAFYAFELIIGTYAIGTLTPVV
                     AAALAATLTMRVLVGHTETIDVGIVGSVSNADYLPAFVLGLVCAGIGVLIMQGVTVIE
                     GLVRRTPLPPYVRPTLGGLIVGALALITPQVLSAGHGALRLQLDTEATVSGLLLVIVL
                     KAIASAVSIGTGFRGGLFFAALFLGGLVGKLFALAAPLLFATATVTPLIYAVVGMSAL
                     AVAIIGGPLTMTFLALEATGDFPITVLVLVAVIASSLTVRKTFGYSFATWRFHLRGES
                     IRSAHDVGWIRTLTVGQLMRKDVRPIRDDTMLSAFRRDFPLGSTQRVIAVDEAERYAG
                     IVVVPEAHSEKLDDAQGTTRIRELLRWKDDFLLPQLNAKQAAELFDKAESEALAVVDG
                     RETRKVIGLLTESHTLRRYSEELDKRRREMAGEA"
     gene            3196..4275
                     /locus_tag="VE686_03150"
     CDS             3196..4275
                     /locus_tag="VE686_03150"
                     /EC_number="1.1.1.93"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018261146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009027 - tartrate dehydrogenase activity
                     [Evidence IEA];
                     GO_process: GO:0046395 - carboxylic acid catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tartrate dehydrogenase"
                     /protein_id="HYY83483.1"
                     /translation="MTRSNRTYRVAVIPGDGIGKEVVPEGVRVLEQAAKRFGFTVQQD
                     WFDFSSYDYYAKHGQMMPDDWKEQIGGHDAIFFGAVGWPAKIPDHVSLWGSLIKFRRE
                     FDQYVNLRPVRLMPGVQAPLANRKPGDIDFWVVRENTEGEYSSVGGRMFPDTDREFVV
                     QESVFTRHGTDRVLKFAFELAQKREKKHLTSATKSNGIAITMPYWDERVEAMGKRFPD
                     VRWDKFHIDILTANFVLHPDWFDVVVASNLFGDILSDLGPACTGTIGIAPSGNINPER
                     SFPSVFEPVHGSAPDIAGQGIANPIGQIWSGAMMLEHLGETDAAQSIVGAIERVLAER
                     TLRTRDLGGNADTDACGKAVAEALG"
     gene            4305..5006
                     /locus_tag="VE686_03155"
     CDS             4305..5006
                     /locus_tag="VE686_03155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012332026.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AzlC family ABC transporter permease"
                     /protein_id="HYY83484.1"
                     /translation="MSRAPATLRGAREGVRLTWPLVPGIVVFASAYGAAAAQKGMTLT
                     EVLIASAVVFGGAAQMVALEAWRDVWSMAGVLQVALIATIINARMVLMGATLQPWMAG
                     WPAGRTAASAFFLVDASWVIGMRHRAEGGNDLGVFLGSGVFLWVVWVLATAPGYVAGA
                     LLPDPKRFGLDMIMPIFFVMMLVPMWRGPRAARPWVVAAVVSLAVQALVPGYLFIVAG
                     ALAGAVSGAFLDDGG"
     gene            4993..>5310
                     /locus_tag="VE686_03160"
     CDS             4993..>5310
                     /locus_tag="VE686_03160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012332027.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AzlD domain-containing protein"
                     /protein_id="HYY83485.1"
                     /translation="MTAVEGFLAGPAGPYVAIVGMALGAYGCRIGGIALMSRVKATAR
                     VERGLRALPGSIMMATVAPIAVQSGFAAVLGLAAALVATALTRFELAGVVAGLATVAA
                     ARAL"
BASE COUNT          706 a         1913 c         1802 g          889 t
ORIGIN      
        1 atcccgatcg cgcaggcggc gctggcgccg ttctcagtcg cgctcgagag cggggccgag
       61 caggcccgca atgccgtcgg ccgggcccgc gacacgcggg agtccctgca gcaggccgtc
      121 gcgcacagcg ccgcggcggc ggcgaacggc atgctcgagc tcaacggcaa ggtcatcgac
      181 ctcctgcgcg cccagagcga tgcggctttc gagctctggc ggtcgacggt gacggccggc
      241 tccctctcgg aagccgtccg tgtccagacg agcggcattc gacaggccta cgaggcgacg
      301 accacccacg ccaaggacgt tgccgaggcc gctacccggg ccatcggcga caccgtgaag
      361 ccgctgcagt cggccatggc ccgcacgccc cgttaaggcc gcggcgccgc aaccaaaaca
      421 gggccccgtc actggtgggg ccctctcgtt ttcgatgtct tgcaatgcgg cggccgtacg
      481 cctaggttcc gcggcgatcg cccttgggca gctgtagctc agttggttag agcgccggat
      541 tgtggatccg gaggtcgctg gttcgacccc agccagctgt accactcagg gtgccgcacc
      601 atcccgtcgg ggccggcacc tcgaaccgcc cttgatgccc cggacgccac cctctcgcgt
      661 gttcctgctc tcgccggctc gcctcgacgg cgagcgggcg cgcctgctgt tccagccggt
      721 cacgatgttt cccgccgcgg ccgcgctccg atcgccggaa ggcgcatcca tcggcgaggt
      781 tttcagcttc ctctccggcc tctatttccg cggcaagctc gcctacgcgg acgcgttcgc
      841 gcggccgccc aaggggctcg aaggcggtgc cttcgtcatc accacgaacc gcggccttgt
      901 tccggcgtcg acccgcatca ccctcgacga cctcgcgcgc ctcgccgagg gtagcatcga
      961 cctctcgtcg caggattttc acgggccgct ccggcgcgat gcagacgtgc tggccggggc
     1021 gctcgggcca ggcggtgcgt ctgtccttct gggcagcatc gcaacggcga aatacgtgga
     1081 cgtgctgctc tcggtgttcg atggaaggct cctgttcccc gccgaattcg tcggtcgcgg
     1141 cgacatgagc cgcggcggcc tgatgcttcg ctgcgtcgac gagcacgccg agctcaccta
     1201 cgtgcccgtg cgcggcgcgg tccgtcgcgg catgcgccct ccgaagctgc cgccccgccg
     1261 cagcacgtcg gggtaggaat gcccgcattc gcgcgctaaa tgcttgcacc tccgccactt
     1321 tccacggcgt ctctcctgca tgctcctgtc cgcgcgcgaa atgcatcgcc ggctgatcac
     1381 ggaaagcccg ctcatgcagg cgccggagcg gctccgcgcg cttgtgcgcg cgagcgagat
     1441 cgggcttgtg ctcgtcgcgc ttgcgatcgg ctgcgtctcg ggcgtgctcg tgtctgcgat
     1501 cggcgaagtc gcgcaggcga tgcacgagct tttcttcagc ctgccccggg agcagcgcct
     1561 gagcggcgcg accggcttgt ggtgggtcgc cgtcctcctg gtgcccaccc ttggcggcgc
     1621 gctcctcggc gtcgtgctgt acgtcggcgc ccggctgcgc aagcgcgcgg cggtcgatcc
     1681 catcgaggcg aacgccctgc acggcggccg catgtcgcta agagacagcg tccttgtcgc
     1741 cttccagaac ctgatctcga acggcttcgg cgcctccgtg ggcctcgagg cggggtacac
     1801 gcagatctgc gccggggtcg cgtcgcggct cgggctctcg ttcgagatgc gccgggccga
     1861 cctgcgcacc ctcgtgggct gcggcgccgc cggcgccatc gcggccgcgt tcaacgcgcc
     1921 gctgaccggc gccttctatg ccttcgagct catcatcggc acctacgcca tcggcacctt
     1981 gacgcccgtc gtggccgcgg cgctggccgc gacactgacc atgcgcgtcc tcgtcggcca
     2041 cacggagacc atcgacgtcg gcatcgtcgg gtcggtcagc aatgccgact acctgcccgc
     2101 ctttgtcctc gggctcgtgt gcgccggaat cggcgttctc atcatgcagg gcgtgacggt
     2161 catcgaaggg ctcgtgcgcc gcacgcctct cccgccgtac gtccggccca ccctgggcgg
     2221 cctgatcgtc ggagcgctcg cgctcatcac gccacaggtg ctctcggccg ggcacggagc
     2281 gctgcggttg cagctcgata cggaagcaac cgtgtccggc ctgctcctgg tcatagtgct
     2341 gaaggcgatc gcgtccgctg tgtcgatcgg cacgggtttc cggggcgggc ttttcttcgc
     2401 cgccctcttc ctcggcggcc tcgtcggcaa gctgttcgcg cttgcggccc ccttgctgtt
     2461 cgccaccgcg accgtgacgc cgctcatcta cgccgtcgtg ggcatgagcg cgcttgcggt
     2521 cgccattatc ggcggcccgc tcaccatgac gttcctggcg ctcgaggcga cgggcgactt
     2581 ccccatcacc gtgctggtcc tcgtggccgt gatcgcgtcg tcgctgaccg tgcgcaagac
     2641 gttcggctac tccttcgcga cctggcgctt ccacctgcgc ggcgagtcga tccgcagcgc
     2701 ccacgacgtc ggctggatcc gcaccctcac ggtcggccag ctcatgcgca aggacgtccg
     2761 ccccatccgc gacgacacca tgctgtcggc attccgacgt gacttcccgc tcggctcgac
     2821 ccagcgcgtc atcgccgtcg acgaggccga gcgctacgcc ggcatcgtcg tcgtgccgga
     2881 ggcccattcc gagaagctcg acgacgccca gggcaccacc cgcatccgcg aactgttgcg
     2941 ctggaaggac gacttcctcc tgccacagct caatgccaag caggcagccg agctgttcga
     3001 caaggcggag agcgaggcgc tcgcagtcgt tgacggccgc gagacccgga aagtgatcgg
     3061 cctcctgacg gagagccaca cgctgcgccg ttacagcgag gaactggaca agcgccgccg
     3121 cgaaatggca ggcgaggctt gagggcgcgc ccgatacagc cgacaaggcc gcgcaacaga
     3181 tctggaggaa gccgcatgac ccgctcgaac cgcacctacc gcgtcgccgt gatccccggt
     3241 gacggcatcg gcaaggaggt cgtcccggag ggcgtccgcg tgctcgagca agcggccaag
     3301 cgcttcggct tcacggtcca gcaggactgg ttcgatttct cctcctacga ctactatgcg
     3361 aagcacgggc agatgatgcc cgacgactgg aaggagcaga tcggcgggca cgacgccatc
     3421 ttcttcggcg ccgtcggctg gccggcgaag atccccgacc acgtctccct gtggggctcc
     3481 ctgatcaagt tccggcgcga gttcgaccag tacgtcaacc tgcgccccgt gcgcctgatg
     3541 ccgggcgtcc aggcgccgct cgccaaccgc aagcccggcg acatcgactt ctgggtcgtg
     3601 cgcgagaaca ccgagggcga atactcctcc gtcggcgggc gcatgttccc ggacacggat
     3661 cgcgagttcg tggtccagga gtcggtcttc acccgccacg gtaccgaccg ggtgctgaag
     3721 ttcgccttcg agctcgccca gaagcgcgag aagaagcacc tcacctcggc gacgaaatcg
     3781 aacggcatcg ccatcaccat gccgtactgg gacgagcgcg ttgaggccat gggcaagcgc
     3841 ttcccggacg tgcgctggga caagttccac atcgacatcc tgactgcgaa cttcgtgctg
     3901 catccggact ggttcgacgt ggtggtggcc tcgaacctgt tcggcgacat cctctcggac
     3961 ctcgggcccg cctgcacggg aacgatcggc atcgcgccct ccggcaacat caacccggag
     4021 cggagcttcc cgtccgtgtt cgagcccgtg cacggctcgg ctcccgacat cgccggccag
     4081 ggcatcgcca accccatcgg ccagatctgg tcgggcgcca tgatgctgga gcatctgggc
     4141 gaaaccgatg ccgcgcagtc gattgtcggc gccatcgagc gcgtcctcgc ggagcggacg
     4201 ctgcgcaccc gcgatctcgg cggcaacgcc gacacggatg cctgcggcaa ggccgtcgcg
     4261 gaggcgctcg gctaggccgt agcgaagtcg gcagcgcacg ggcgatgtcg cgcgcgcccg
     4321 caacgctgcg cggcgcccgc gagggcgtgc gcctcacctg gcctctcgtg ccgggcattg
     4381 tcgtcttcgc gagcgcctac ggcgccgcgg cggcgcagaa gggcatgacg ctgactgagg
     4441 tcctgatcgc gagcgccgtc gtgttcggcg gcgcggcgca gatggtcgcc ctcgaagcct
     4501 ggcgcgacgt ctggtcgatg gcgggcgtgc ttcaggtcgc gctcatcgcg accatcatca
     4561 acgcccgcat ggtcttgatg ggcgcgaccc tgcagccgtg gatggccggc tggcccgccg
     4621 ggcgcacggc tgcgagcgcg ttcttcctcg tcgatgcgag ctgggtcatc ggcatgcggc
     4681 accgggccga gggcggcaac gacctcggcg tgttcctcgg ctccggcgtg ttcctgtggg
     4741 tcgtctgggt gctcgcgacg gcgcccggct acgtcgcggg cgcgcttctg cccgatccga
     4801 agcgcttcgg cctcgacatg atcatgccga tcttcttcgt catgatgctg gtgcccatgt
     4861 ggcggggccc ccgcgcggct cggccgtggg tggtcgcggc ggtcgtgagc ctcgccgtgc
     4921 aggccctggt gccgggctat ctcttcatcg tggccggagc gctcgcgggc gccgtctcgg
     4981 gagcgttcct cgatgacggc ggttgagggg ttcctcgccg gcccggccgg gccgtatgtc
     5041 gccatcgtcg gcatggcgct cggcgcctac gggtgccgga tcggtggcat cgccctgatg
     5101 tcccgcgtca aggccacggc ccgggtcgag cgggggctgc gggcgctgcc ggggtcgatc
     5161 atgatggcga cggtcgcgcc catcgcggtg cagtcgggct tcgccgccgt gctcgggctt
     5221 gcggcggccc ttgtggcgac ggcgctgacc cgcttcgagc tcgccggggt ggtcgccggg
     5281 ctcgcgacgg tcgcggctgc gcgggccctc
//
LOCUS       DASQWN010000169         3857 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_27105, whole genome shotgun sequence.
ACCESSION   DASQWN010000169 DASQWN010000000
VERSION     DASQWN010000169.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 3857)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3857)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3857
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_27105"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..267)
                     /gene="gatB"
                     /locus_tag="VE686_03165"
     CDS             complement(<1..267)
                     /gene="gatB"
                     /locus_tag="VE686_03165"
                     /EC_number="6.3.5.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011441330.1"
                     /note="allows the formation of correctly charged
                     Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation
                     of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms
                     which lack either or both of asparaginyl-tRNA or
                     glutaminyl-tRNA synthetases; reaction takes place in the
                     presence of glutamine and ATP through an activated
                     phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase
                     GatCAB subunit B"
                     /protein_id="HYY83486.1"
                     /translation="MNAAVDPKKLIKGATGDWEVVVGMEVHAQVTSEAKLFSGASTEF
                     GGDPNSHVSFVDAAMPGMLPVINEECVRQAIRTGLGLKAQINLKS"
     gene            complement(330..1325)
                     /locus_tag="VE686_03170"
     CDS             complement(330..1325)
                     /locus_tag="VE686_03170"
                     /EC_number="7.4.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018269470.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0015833 - peptide transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dipeptide ABC transporter ATP-binding protein"
                     /protein_id="HYY83487.1"
                     /translation="MTAPLIEVAGLKKHFPVKKGLLRRTVGHVLAVDGVSFKVGPGET
                     LGLVGESGCGKSTLARVAMRLVEPTSGAIRLDGRDITGLSKRELRPYRREMQMIFQDP
                     FSSLNPRMSAGDIVGEPLKVHGITRGGETAEQVAGLFEQVGLRRAQMRSYPHEFSGGQ
                     RQRISIARALALAPKLIIADEPVSALDVSIQAQVINLMMDLQQKRGLSYLFVAHDLAV
                     VEHISHRVAVMYLGRIVEQADKATLFTKPLHPYTQALLAAVPVPNPKLKRDKRVLQGD
                     VPSPMNPPPGCPFHTRCPYAFEPCRTVVPRLTEVAPGQEVACHLHVPPEASARAA"
     gene            complement(1322..2368)
                     /locus_tag="VE686_03175"
     CDS             complement(1322..2368)
                     /locus_tag="VE686_03175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018644413.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HYY83488.1"
                     /translation="MPAATLDPLATAATPPVLEVQDLRTVFFTSRGLIRAVDGVSFSL
                     HPRETLAIVGESGCGKSMTALSIMRLIPDPPGRIVNGSVVLEGRDLLKLPEDEMRLVR
                     GDDLSMIFQEPMTSLNPVMTIGRQIGEAVRLHQDVSKAAAAERAVEMLRLVKIPEPAQ
                     RAKEYPHQLSGGMRQRAMIAMALACNPKVLIADEPTTALDVTIQAQILDLMLRMQQEL
                     GTSIVLITHDLGVVAETAQRVIVMYAGRKVEEASVDDLFDQPLHPYTFGLMGSIPRLA
                     AMTGAAPGPAQRLQEIPGSVPSLVDLPQGCVFAPRCAFATDVCREQYPPYEEKRPGHR
                     AACWHSDRLVGATP"
     gene            complement(2383..3297)
                     /locus_tag="VE686_03180"
     CDS             complement(2383..3297)
                     /locus_tag="VE686_03180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018644414.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HYY83489.1"
                     /translation="MAAGNQGIEAADFAGELARAGAGSGGVWGRMRHLIWRHPLGAAG
                     AIIIAVLAFGALFADLITVYDPFRTDSSISLARPTLAHWMGADFMGRDIYSRIVYGAR
                     ISLAVGLGSTALGCLFGVAIGLSSGYIGGWYDLVVQRLIDILQALPILVLALVMAAAL
                     GPSLQNTIIAIAIPLIPSVARVIRSNTLALREMPFVEAAKATGMSEFRIAVRHVLPNT
                     LAPLIVLGTAQLGAAILTEASLSFLGLGIPEPHPSWGRMLSESAAEYVRTAPWLVIFP
                     GLAISLTVFGTNLVGDAARDILDPRQRS"
     gene            complement(3306..>3857)
                     /locus_tag="VE686_03185"
     CDS             complement(3306..>3857)
                     /locus_tag="VE686_03185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018455967.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HYY83490.1"
                     /translation="AAALWLLVGIPIGILAATKPRSLRDRAATFFALGGLSMPTFVVG
                     LLLLYSIPAAAVGFRSSALIMRLTRSSMLEVLRQDYIRTARAKGTPERGVNYDHALRN
                     ALLPVVTVIGIEAAFLIGGLIVTETVFNIPGVARFLVEAVRARDYPIVQNLVMFIAIV
                     VVVVNFLVDMLYAALDPRIKYSD"
BASE COUNT          627 a         1256 c         1419 g          555 t
ORIGIN      
        1 gctcttcagg ttgatctgag ccttgaggcc gaggccggtg cggatggcct ggcgcacgca
       61 ttcctcgttg atcaccggca gcatgccggg catggcggca tcgacgaagg acacgtggct
      121 gttcggatcg cctccgaact ccgtggaagc gcccgaaaag agcttcgcct cgctcgtcac
      181 ctgggcatgg acctccatgc cgacgacgac ctcccagtcc ccggtggcgc ccttgatcag
      241 cttcttcgga tcgacggcag cgttcatgtc tgtcagcctt cgcgtggtct tgagagtaag
      301 cgcgcagtaa ggggctgccg gcgtggcggt caagccgccc gggccgacgc ctcgggcggc
      361 acgtgcaggt ggcaggcgac ctcctggccg ggcgcgacct cggtcagccg cggcacgacc
      421 gtccggcagg gctcgaacgc ataggggcag cgggtgtgga aggggcagcc cggcgggggg
      481 ttcatggggc tcggcacgtc gccctggagc acgcgcttgt cgcgcttgag cttggggttc
      541 ggcaccggca cggcggcgag cagcgcctgc gtgtaagggt ggaggggttt tgtgaacagg
      601 gtcgccttgt cggcctgctc gacgatccgg ccgaggtaca tgacggcgac gcgatgcgag
      661 atgtgctcga cgactgcgag gtcgtgggcg acgaagaggt acgacagccc acgcttctgc
      721 tgcaggtcca tcatcaggtt gatcacctgc gcctgaatcg acacgtcgag cgccgagacg
      781 ggctcgtccg cgatgatgag cttgggcgcc agcgccagcg cgcgggcgat cgagatgcgc
      841 tgccgctgcc cccctgagaa ctcgtgcggg tagctgcgca tctgcgcccg ccgcaggccg
      901 acctgctcga acaagccggc cacctgctcc gccgtctcgc caccgcgggt gatgccgtgc
      961 accttcagcg gctcgccgac aatgtcgccc gccgacatgc gcgggttcag cgacgagaac
     1021 ggatcctgga agatcatctg catctcgcgc cggtacggac gcagctcgcg cttcgacaat
     1081 cctgtgatgt cgcgtccgtc gaggcggatg gcgccgctcg tcggctcgac gagccgcata
     1141 gccacgcggg cgagcgtgga cttgccgcac ccggattcgc cgacgagccc gagggtctcg
     1201 cccggcccga ccttgaagct cacgccgtcg acggcaagca cgtggccgac cgtgcggcgc
     1261 agaagcccct tcttgaccgg gaaatgcttc ttgaggcccg cgacctcgat gagcggcgcg
     1321 gtcacggcgt cgctcccacg agccggtcgg agtgccagca cgccgcgcga tggccggggc
     1381 gcttctcctc gtagggcggg tactgctcgc gacaaacgtc cgtcgcaaag gcgcagcgcg
     1441 gggcgaagac gcagccctgc ggcaggtcga cgagggacgg cactgagccg ggaatctcct
     1501 gcagccgctg agcgggcccg ggcgcggcgc ccgtcatggc ggcgagcctc gggatcgagc
     1561 ccatgaggcc gaaggtgtag ggatgcaggg gctggtcgaa gaggtcgtcg acgctcgcct
     1621 cctcgacctt gcggccggcg tacatgacga tgacgcgctg ggccgtctcg gcgacgacgc
     1681 cgaggtcgtg ggtgatgagc acgatcgagg tgccgagctc ctgctgcatg cgcagcatca
     1741 ggtcgaggat ctgcgcctgg atggtgacgt cgagggccgt cgtcggctcg tcggcgatga
     1801 ggactttcgg attgcacgcg agcgccatgg cgatcatggc gcgctggcgc atgccgccag
     1861 agagctggtg cgggtactcc ttggcgcgct gcgccggctc cgggatcttg acgaggcgca
     1921 gcatctcgac ggcgcgctcg gccgcagccg ccttggagac gtcctggtgc agccgcaccg
     1981 cctcgccgat ctggcggccg atggtcatca cggggttgag cgacgtcatc ggctcctgga
     2041 agatcatcga gaggtcgtcg ccgcgcacga ggcgcatctc gtcctcgggc agcttcagca
     2101 ggtccctccc ctccaggacc acgctgccgt tcacgatgcg gcccggcggg tcggggatga
     2161 ggcgcatgat cgagagcgcc gtcatgctct tgccgcagcc cgattccccg acgatcgcaa
     2221 gcgtctcgcg cggatgcagc gagaacgaga cgccgtcgac ggccctgatg agcccgcgcg
     2281 aggtgaagaa caccgtgcgc agatcctgca cctcgaggac gggcggggtc gcggcggtcg
     2341 cgagcgggtc gagggtcgcg gcgggcatcg ctgctgcgct catcagctgc gctgcctcgg
     2401 gtcgaggatg tcgcgggcgg cgtcgccgac gaggttggtg ccgaacaccg tgaggctgat
     2461 agcgaggccc gggaagatca cgagccaggg cgccgtgcgc acgtattcgg cggccgattc
     2521 cgaaagcatg cggccccacg acgggtgcgg ctccgggatg ccgagaccga ggaacgacag
     2581 cgatgcctcc gtcaggatcg ccgcaccgag ctgcgcggtg ccgagcacga tcagcggcgc
     2641 cagggtattc ggcaggacgt ggcgcacggc gatgcggaac tcgctcattc cggtcgcctt
     2701 ggcggcctcg acgaagggca tctcgcgcag cgccagcgtg ttcgagcgga tgacgcgggc
     2761 gacggacggg atcagcggga tggcgatggc gatgatggtg ttctgcaacg acggcccgag
     2821 cgccgccgcc atgacgaggg ccaggacgag gatcggcagg gcctgcagga tgtcgatgag
     2881 gcgctgcacg accaggtcgt accagccgcc gatgtagccc gagctcaagc cgatggcgac
     2941 gccgaagagg cagccgagcg ccgtcgagcc gagcccgacg gcgagcgaga tgcgggcgcc
     3001 gtagacgatg cggctgtaga tgtcgcggcc catgaagtcg gcgcccatcc agtgcgcaag
     3061 cgtcgggcgc gcaagcgaga tcgacgagtc cgtgcgaaag gggtcataga cggtgatcag
     3121 atcggcaaag agggcgccga aggccagcac cgcgatgatg atcgcgccgg cagccccgag
     3181 cggatggcgc cagatgaggt gccgcatgcg gccccacacc ccgcccgagc cggcacccgc
     3241 gcgcgcgagc tcgccggcga agtcggcggc ctcgatgccc tggttgcccg ccgccatgcc
     3301 gcgcctcaat ccgaatactt gatgcgcgga tcgagcgccg cgtagagcat gtccaccagg
     3361 aagttcacga ccaccaccac gatggcgatg aacatgacca ggttctgcac gatcggatag
     3421 tcgcgggcgc ggacggcctc gacgaggaag cgcgcgacgc cggggatgtt gaacaccgtc
     3481 tcggtgacga tgaggccgcc aatcaggaag gccgcctcga tgccgatgac ggtgacgacg
     3541 ggcaggagcg cgttgcgcag ggcgtggtcg tagttgacgc cacgctccgg cgtgcccttg
     3601 gcgcgggccg tgcggatgta gtcctggcgc agcacctcga gcatagagga ccgcgtcagg
     3661 cgcatgatca gcgccgagct gcggaagccg accgccgcgg ccgggatgct gtagagcagc
     3721 agcagaccga cgacgaacgt cggcatggag agcccgccga gcgcgaagaa ggtcgccgcc
     3781 cggtctcgca ggctcctcgg tttggtcgcg gccaggatgc cgatgggtat cccgaccagc
     3841 agccacagcg cggccgc
//
LOCUS       DASQWN010000170         2796 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1416407, whole genome shotgun sequence.
ACCESSION   DASQWN010000170 DASQWN010000000
VERSION     DASQWN010000170.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2796)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2796)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2796
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1416407"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            175..933
                     /locus_tag="VE686_03190"
     CDS             175..933
                     /locus_tag="VE686_03190"
                     /EC_number="7.6.2.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018322772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HYY83491.1"
                     /translation="MSSLTIKGLSKTYFDAYAASHVTAVQDVSLTVREGEFVSIVGPS
                     GCGKTTILNMIAGFVKPTGGEILVGGRAVSGPGPDRGVVFQSFALFPWKTVLENVSFG
                     PKMRGIGKAERDAIAREYLALAGLAHAADRYPNELSGGMQQRVGVVRALANEPEVLLM
                     DEPFASVDAQTRMTLQEELTRIWQERRPTVIFITHDVGEAVFLAERVVVLSKGRVLDE
                     IDVRLPRPRAWDALTEDGDFKALSARVLQMVRSA"
     gene            930..1262
                     /locus_tag="VE686_03195"
     CDS             930..1262
                     /locus_tag="VE686_03195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009026126.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY83492.1"
                     /translation="MKLVCAALASRRGIAVLAVLAGILAYQLWLTLAAPGKIAPGFAP
                     GAPRVNVLVTLPFVPERFHVLVFQRYGRVSGTQDNSVEVRGVRQADLAALARPYWVRR
                     VEPLPTGG"
     gene            1264..2319
                     /locus_tag="VE686_03200"
     CDS             1264..2319
                     /locus_tag="VE686_03200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015685786.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HYY83493.1"
                     /translation="MLRRTLLLAAGLLFAAPALAQEPVKLKAGMVTGIDQIGLPIALE
                     RGFFEKHGLDVTIARPYATGVDALNALQAGESEIVQVGVPMIGAVLRGMDLVALGNYS
                     GNATKLGSDATMALIASEVSGIKKGDLASLKGKKIAASFGTINHLYVLALLEKAGLTP
                     NDVTLVNTPPPDMTVALLAKGIDAFSGWDPWPIVALKDVPGAVEVIRGGDVISYLGFN
                     VATRPWVEKNGPTIEKFLAAVSEADKWMRANPKQAAQVATRWIPGLKTDVAEAAMQFN
                     ITQADRRLSANNYRALWSAEDRLNRLGFLKSTFDVNKHIEPKHILAVMQKHPDLFSDL
                     PAIPDDVAIKPGFVFKP"
     gene            2522..>2796
                     /locus_tag="VE686_03205"
     CDS             2522..>2796
                     /locus_tag="VE686_03205"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="PLP-dependent aminotransferase family protein"
                     /protein_id="HYY83494.1"
                     /translation="MTPAETSVFQSAFRSGLPAPAPRFTGLPRYNFVYGHNDPSQVPA
                     HELAEAASAVLNANGHLLGMYNLGQGPQGHKGLREFVAQKLGTRSGIS"
BASE COUNT          430 a          989 c          928 g          449 t
ORIGIN      
        1 catcgtcggc acgagcggca tcggcttcct catgttcgac gcccgccggg ccggctcggt
       61 cgtcgagatc gtcgtcggca tgatcgtgct cggagccttg tggtacatcg tggacggctg
      121 gatcctggcg ccgatcgagc gcgccaccgg ccagcgctgg ggattggtga cgcggtgagc
      181 agcctgacca tcaagggcct gtcgaagacc tatttcgacg cctacgcggc ctctcacgtc
      241 accgccgtgc aggacgtctc gctcaccgtg cgagagggcg agttcgtgtc gatcgtcggc
      301 ccgtccggat gcggcaagac caccatcctc aacatgatcg ccggcttcgt gaagccgacc
      361 ggcggcgaga tcctcgtcgg cggccgcgcg gtgagcggcc ccgggcccga ccgcggcgtg
      421 gtgttccagt ccttcgcgct cttcccctgg aagaccgttc tcgagaacgt ttccttcggg
      481 ccgaagatgc gcggtatcgg caaggccgag cgcgacgcca tcgcccgcga gtacctcgcg
      541 ctcgccggcc tcgcgcacgc ggccgaccgc tatccgaatg agctttcagg cggcatgcag
      601 cagcgcgttg gcgtggtgcg cgcgctcgcc aacgagcccg aggtgctgct catggacgag
      661 cccttcgcct cggtcgatgc gcagacccgc atgaccctgc aggaggaact cacccgcatc
      721 tggcaagagc gccgcccgac ggtgatcttc attacccacg acgtcggtga ggcggtgttt
      781 ttggccgagc gcgtcgtggt gctgtcgaag gggagggtgc tcgacgagat cgacgtgcgc
      841 ctgccccgcc cgcgggcctg ggacgccctc acggaggacg gcgacttcaa ggcgctctcg
      901 gcccgggtgc tccagatggt gcgctcggca tgaagctggt ctgcgccgcg ctcgcttcgc
      961 gccggggcat cgccgtcctt gcggtgctcg ccggcattct cgcctaccag ctgtggctga
     1021 cgctcgccgc accgggcaag atcgcgccgg gcttcgcgcc gggcgcgccg cgcgtgaacg
     1081 tgctcgtcac gttgcccttc gtgccggaac ggttccatgt gctggtgttc cagcgctatg
     1141 gtcgcgtctc gggaacgcaa gacaactccg tcgaagtgcg gggtgtgaga caggcggacc
     1201 tcgccgcgct ggccagaccc tattgggtca ggcgcgtcga gccgctgcca acgggaggat
     1261 aggatgctca gacgtacgct tcttcttgca gccggcttgc tcttcgccgc ccctgcgctg
     1321 gcgcaggagc cggtcaagct caaggccggc atggtgaccg gcatcgacca gatcgggctg
     1381 ccgatcgccc tcgagcgcgg cttcttcgag aagcacggcc tcgacgtcac catcgcccgg
     1441 ccctacgcga cgggcgtcga tgccctcaac gcgctccagg cgggcgagag cgagatcgtc
     1501 caggtcggcg tgccgatgat cggggcggtg ctgcgcggca tggacctcgt ggccctcggc
     1561 aactactcgg gcaatgcgac gaagctcggc tcggacgcca ccatggcgct gatcgcgagc
     1621 gaggtatccg gcatcaagaa gggcgatctg gcgagcctca agggcaagaa gatcgccgcc
     1681 tccttcggca ccatcaatca cctctacgtc ctggcgctgc tcgagaaggc gggtctcacg
     1741 ccgaacgacg tgaccctcgt caacaccccg ccgcccgaca tgaccgtcgc gctgctcgcc
     1801 aaggggatcg acgccttctc gggctgggat ccctggccga tcgtcgccct caaggacgtg
     1861 ccgggcgccg tcgaggtgat ccgcggcggc gacgtcatct cgtacctcgg cttcaacgtc
     1921 gcgacccgcc cctgggtcga gaagaacggg ccgacgatcg agaaattcct cgccgccgtc
     1981 tcggaagccg acaagtggat gcgggccaat ccgaagcagg ccgcgcaggt cgccacgcgc
     2041 tggatcccgg gcctcaagac ggacgtcgcc gaggccgcca tgcagttcaa catcacacag
     2101 gccgaccggc gactctcggc caacaactac cgcgccctgt ggagcgccga ggaccgcctg
     2161 aaccgtctcg gcttcctcaa gagcaccttc gacgtgaaca agcacatcga gccgaagcac
     2221 atcctcgcgg tgatgcagaa gcacccggac ctgttctcag acctgcccgc cattcccgac
     2281 gacgtcgcca tcaagcccgg cttcgtcttc aagccgtgac aactccctcc ccccgcgcgc
     2341 ggagcgcgtg gcggggaggg gtggactcgc gcgtcagcgc gggccggggt ggggggagag
     2401 tttcgagcac cctgactcgc cccccaccct cgctcgggcc cttttgggcc cgagtcgtcc
     2461 ctccccgcac ccgctgacgc gggcggggga gggaggcgcc ccttgctata gaggatcgac
     2521 gatgacccct gccgaaacct ccgtgttcca gtccgccttc aggtccgggc tgccggcgcc
     2581 ggcgccgcgg tttactgggc tgccgcgcta caacttcgtc tacggccaca acgatccctc
     2641 gcaggtgccg gcgcacgagc tcgccgaggc cgcgagcgcg gtgctcaatg ccaacggcca
     2701 tctgctcggc atgtacaacc tcggccaggg gccgcagggt cataagggcc tgcgcgagtt
     2761 cgtggcccaa aagctcggca cccgtagcgg catctc
//
LOCUS       DASQWN010000171         2113 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_906390, whole genome shotgun sequence.
ACCESSION   DASQWN010000171 DASQWN010000000
VERSION     DASQWN010000171.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2113)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2113)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2113
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_906390"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..654)
                     /locus_tag="VE686_03210"
     CDS             complement(<1..654)
                     /locus_tag="VE686_03210"
                     /inference="COORDINATES: protein motif:HMM:NF013425.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ADP/ATP-dependent (S)-NAD(P)H-hydrate
                     dehydratase"
                     /protein_id="HYY83495.1"
                     /translation="MTGATAVTAELLREMPLPQPSETGDKDERGRVLVVAGSPEVPGG
                     ALLAGVAALRAGAGKLQIATSASIAPHLGLAVPEALVIALPQGVDGGVGEGALEAVLP
                     RARRCDALVIGPGILDEAGAAALAGGLLDALDGPAFVLDAGALIRLGDLGEPMRKQVG
                     RVVVTPHAGEMAGLLGVTRDEVVAEPLATARQAASLLRSVVALKGATTHIVTPQGDAW
                     "
     gene            complement(651..1415)
                     /locus_tag="VE686_03215"
     CDS             complement(651..1415)
                     /locus_tag="VE686_03215"
                     /EC_number="3.1.3.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012330718.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine phosphatase family protein"
                     /protein_id="HYY83496.1"
                     /translation="MPKRWPERLWIVRHGESAGNVARDAAHAAGLAMIDISGRDADVA
                     LSPLGEAQADALGRWFAAMPSDARPNVLLVSPYRRAKQTAELIRAAGGLSDDAPEFVI
                     DERLREKEFGILDRLTRSGIERDYPQQAEFRRILGKFYHRPPGGESWCDVILRLRSAL
                     DTMSLHYDGCRVLVVSHQVVVLCLRYLVEQMTEEQILAIDTQAEVANCSVTEYRLDEA
                     AGKHGALVLARYNFVAPLERAGAPVTSEPDAPVAVR"
     gene            1819..>2113
                     /locus_tag="VE686_03220"
     CDS             1819..>2113
                     /locus_tag="VE686_03220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009490638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA translocase FtsK 4TM domain-containing
                     protein"
                     /protein_id="HYY83497.1"
                     /translation="MRTLRRSSPFDAFSDSVRAFVRRRAVELAGLGLVGVTAAMTAAL
                     ATWTIDDPSLNNATAAQVRNLLGAPGAIAADLVMQILGLGAIALLVPPAVWGWR"
BASE COUNT          300 a          771 c          728 g          314 t
ORIGIN      
        1 ccaggcgtcg ccttgcggcg tcacgatgtg ggtcgtcgcg cccttcaggg cgacgacgct
       61 gcgcaaaagg ctcgcggcct gccgcgccgt ggccagcggc tcggccacga cctcgtcgcg
      121 ggtgacgccc agaaggcccg ccatctcgcc cgcgtggggc gtgaccacca cgcggcccac
      181 ttgcttgcgc atgggctcgc cgaggtcgcc gagccggatc agcgcgccgg cgtcgagcac
      241 gaaggcgggg ccgtcgagcg catcgaggag gccgcctgcc agcgccgccg ccccagcctc
      301 gtcgaggatg cccggcccaa tgacgagggc gtcgcagcgc cgcgcccgcg gcagcaccgc
      361 ctcgagcgcc ccttcgccga cgcccccgtc gaccccctgg ggcagggcga tcaccagcgc
      421 ctccggcacc gcgaggccga gatgcggggc aatcgaggcg gaggtagcga tctgcagctt
      481 cccggcgccg gcgcgcagag cggcaacgcc ggcgaggagc gcgcccccgg gcacctccgg
      541 gctgccggcg acgacgagca cccggccgcg ctcgtccttg tcgccggtct cgctcggctg
      601 gggcagcggc atctcgcgca ggagctccgc cgtgacggcg gtcgcgcccg tcatcgaacg
      661 gccacgggcg catccggctc gctggtcacc ggcgccccgg cacgctcgag aggggcgaca
      721 aagttgtagc gtgcgagcac gagcgcgccg tgctttcccg cagcctcgtc gaggcggtac
      781 tcggtgacgg agcagttcgc gacctcggcc tgggtgtcaa tcgcgagaat ctgctcttcc
      841 gtcatctgct cgacgagata gcgcaggcac aggacgacga cctgatggct gacgacgagc
      901 acgcgacatc cgtcatagtg caggctcatg gtgtcgagcg cgctgcgcag gcgcaggatc
      961 acgtcgcacc agctctcgcc accgggaggc cggtggtaga acttgccgag gatgcgccgg
     1021 aactcggcct gctgcggata gtcgcgctcg attcccgagc gggtgagtcg gtcgaggatg
     1081 ccgaactcct tctcgcgcag gcgctcgtct atcacgaact cgggcgcgtc gtcgctcaag
     1141 ccgccggcgg cgcggatgag ctcggcggtc tgcttggccc gccggtaggg agagacgagc
     1201 agcacgttcg gccgcgcgtc ggacggcatg gcggcgaacc atcgtccgag cgcgtccgcc
     1261 tgcgcctcgc cgagcgggct caaggccacg tcggcgtcac gtcccgagat gtcgatcatg
     1321 gcaaggcccg ccgcgtgcgc ggcgtcgcgc gcgacgtttc cggcgctttc tccatggcgc
     1381 acgatccaca gccgttccgg ccagcgcttc ggcacactta acctcctcgg tcgcaccgga
     1441 cgacaacgcg cctcacagat gaacgatcct gcctcccgtg agagccacct gcgcgcacgc
     1501 gacgatctcg cgggacccgc cagcgcgggg gcaagaacaa ggacgactga actctgttcc
     1561 gatgtacctg cgaagcggcc tcaccgtatg ctgtggactg tgtgctttga ggcacaggta
     1621 ttcggccacg actcacgtaa cgtcatggcg tttcctcccg aagcggctcg gtcgccgctc
     1681 acctccaaaa ggcggcccag gccgcctttt ttctcgtccc gagggaggcc cggaggggtg
     1741 ggaaggttaa tcgcgtctta accccgtccg catagcgtcc ggagacggcg gttcgcctcc
     1801 ccttcttccg gttcaatgat gcgcaccctt cgccggtcct cgcctttcga cgccttctcc
     1861 gacagcgtgc gggccttcgt ccgccgccgg gctgtcgagc ttgccgggct cggcctcgtc
     1921 ggggtcaccg cggccatgac cgcggcgctg gcgacctgga ccatagacga cccgagcctc
     1981 aacaacgcca ccgcggcgca ggtccgaaat ctcctcgggg cgccgggcgc gatcgcggcc
     2041 gacctggtca tgcagattct cgggctcggc gccattgcgc tcctggtccc gccggcggtg
     2101 tggggctggc gcc
//
LOCUS       DASQWN010000172         3050 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_509455, whole genome shotgun sequence.
ACCESSION   DASQWN010000172 DASQWN010000000
VERSION     DASQWN010000172.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 3050)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3050)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3050
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_509455"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            173..541
                     /gene="rpsL"
                     /locus_tag="VE686_03225"
     CDS             173..541
                     /gene="rpsL"
                     /locus_tag="VE686_03225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020185797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000314 - organellar small ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S12"
                     /protein_id="HYY83498.1"
                     /translation="MPTINQLVRGPRTPPQAKTKTPALRGAPQKRGVCTRVSTVTPRK
                     PNSALRKVARVRLTNGMEVTSYIPGEGHNLQEHSVVLVRGGRVKDLPGVRYKVVRGTL
                     DAAGVSDRKKARSQYGAKAR"
     gene            544..1014
                     /gene="rpsG"
                     /locus_tag="VE686_03230"
     CDS             544..1014
                     /gene="rpsG"
                     /locus_tag="VE686_03230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013054923.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000314 - organellar small ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S7"
                     /protein_id="HYY83499.1"
                     /translation="MPRRAAAAVRPVEPDPMYGSKLVQQVINKVMVDGKKSTAEKIVY
                     DALEMLSRRTNNEPVPSLEESIKILTPTLEVRSRRVGGATYQVPVEVPPPRARTLAVR
                     WLVEFSRQRREKSMAERLAGELADAQSQQGAAYKRKDDIFRMAQANKAFAHYRW"
     gene            1117..1386
                     /locus_tag="VE686_03235"
     CDS             1117..1386
                     /locus_tag="VE686_03235"
                     /inference="COORDINATES: protein motif:HMM:TIGR02605.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ribbon domain-containing protein"
                     /protein_id="HYY83500.1"
                     /translation="MPLYEFACEACGARFEELTPPAGTAPCPACGGESVRRVFSPIAE
                     RGLGVGLTGAAARDSNSRRAEREAAKKDRFVAERKRKRGQGPPGA"
     gene            1383..1775
                     /locus_tag="VE686_03240"
     CDS             1383..1775
                     /locus_tag="VE686_03240"
                     /inference="COORDINATES: protein motif:HMM:NF024092.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nuclear transport factor 2 family protein"
                     /protein_id="HYY83501.1"
                     /translation="MKVPDGVALVQAAIDAYNRRDVAELRELMTEHVQLRPPVSALTG
                     RAYLGHDGIAEWLHDVDESFATAEIVPLELRDLGGKVLALTEFVVEGYESRVPLGSEL
                     GLVCDLAEGRIASWLGFFSHAEARAAAT"
     gene            complement(1772..2260)
                     /locus_tag="VE686_03245"
     CDS             complement(1772..2260)
                     /locus_tag="VE686_03245"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY83502.1"
                     /translation="MPRRPKPIDSTLHGATDYSVGTFLVTAFPRLAGIQGTRAGRQIR
                     TAGAVHAGYSTVTDYPLGIVKALPYTAHLAIDALGALALAATPFVTGEFRHGRRHWLP
                     HVGLALFELGSLALTDPTGKGDYHGDVEAVRRANTEDPHKKIHEGPPAVRPRAAARAE
                     AT"
     gene            complement(2272..>3050)
                     /locus_tag="VE686_03250"
     CDS             complement(2272..>3050)
                     /locus_tag="VE686_03250"
                     /inference="COORDINATES: protein motif:HMM:NF012335.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="zinc-binding dehydrogenase"
                     /protein_id="HYY83503.1"
                     /translation="YAGGQAEYARVPYADVGPIKIEDELSDEQVLFLSDVFPTGYFGA
                     DLCDIQGGEVIAVFGAGPVGQFAIASAALLGAERIIAIDQYDYRLQMALNKAGATDSI
                     NFSEDADVVEQLKELTAGRGPDAVIDAVGMEAAHGHGALHAVDRMKQATRSETDRGHA
                     LRDAILACRPGGIVSVIGVYGGIMDKFPSGAFMNKGLQLRAGQAPVQKYLRPLYERIR
                     DGQIDPSFIVTHRLGLDQAPNGFETFKHKQDECVKVVLKP"
BASE COUNT          452 a         1066 c         1074 g          458 t
ORIGIN      
        1 cgtggccgcg ggccgtcccc cgaccggggc acgaaccctc gtttggtccg ccgcccgagg
       61 ttcgctacac tcccctcttg ccgcggcccc gtcgggcttg cgcacgctgc cgcacgccca
      121 ctgaacgtcg tcgggcgtca ccgcgaatcg acgccgtccc gagaaagcgt tcatgccgac
      181 catcaatcag ctcgtgcgcg gtccgcgcac cccgccccag gccaagacga agacgcccgc
      241 gctgcgcggc gcgccgcaga agcgcggcgt ctgcacgcgc gtctcgacgg tcacgccccg
      301 taagccgaac tcggcgctgc gcaaggtcgc gcgcgtgcgg ctcaccaacg gcatggaggt
      361 cacgtcctac atcccgggcg aggggcacaa cctgcaggag cactcggtgg tgctcgtgcg
      421 cggcggtcga gtcaaggacc tgccgggcgt gcgctacaag gtcgtgcgcg gaaccctcga
      481 cgccgccggc gtctcggacc gcaagaaggc tcgctcgcag tacggggcga aggcccgcta
      541 gggatgccgc gccgcgccgc cgcagcagtc cggccggtcg agcccgaccc catgtacggg
      601 tcgaagctcg tccagcaggt catcaacaag gtgatggtgg acggcaagaa gtccacggcc
      661 gagaagatcg tctacgacgc gctggagatg ctctccaggc gcaccaacaa cgagcccgtc
      721 ccgtcgctcg aggagtcgat caagatcctc acgccgacgc tcgaggtccg ctcccgccgg
      781 gtcggcgggg ccacctacca ggtgcccgtc gaggtgccgc cgccgcgcgc ccgcacgctc
      841 gcggtgcgct ggctggtcga gttctcccgc cagcggcgcg agaagtcgat ggccgagcgg
      901 cttgccggag agctcgccga cgcccagtcc cagcagggcg cggcgtacaa gcgcaaggac
      961 gacatcttcc ggatggcgca ggccaacaag gccttcgccc actaccgctg gtagccgggc
     1021 gaactgcagc aataagggct cagcagcgag tgcgggccct acttccggca aatatcaccg
     1081 gaaccggggc ccacacgcgg gattaacctt ccttgggtgc cgctgtatga gttcgcctgt
     1141 gaggcttgtg gtgcgaggtt cgaggagctg accccgcccg cgggcacggc gccctgtccg
     1201 gcctgcggcg gcgaaagcgt ccggcgtgtc ttctcgccga tcgccgagcg gggcctcggg
     1261 gtcgggctga ccggggccgc cgcgcgcgac tcgaactctc gccgcgcaga gcgcgaggcc
     1321 gccaagaagg accgcttcgt cgcggagcgc aagcgcaagc ggggccaagg gccaccgggc
     1381 gcatgaaggt cccggacggg gtggccctgg tccaggccgc catcgacgcc tacaaccggc
     1441 gcgatgtcgc cgagctgcgg gaactgatga ccgagcacgt ccagctgcgc cctccggtct
     1501 ccgccctgac aggccgtgcc tacctcggcc acgacggaat cgccgaatgg ctgcacgacg
     1561 tcgacgagag cttcgccacc gcggagatcg tgccgctcga gctccgcgat ctcggcggca
     1621 aggtcctggc gctcacggag ttcgtcgtcg agggctacga gagccgcgtc ccgctgggct
     1681 ccgagctcgg gctcgtctgc gatctggccg aagggcgcat cgccagctgg ctcgggttct
     1741 tcagccacgc ggaagcccgc gcggccgcaa cctaggtcgc ttcggcccgc gcggccgccc
     1801 gcggcctcac ggccggcgga ccctcatgga tcttcttgtg cggatcctct gtgttggccc
     1861 tgcggaccgc ctcgacatct ccgtggtagt cgcctttgcc ggtgggatcg gtcagggcca
     1921 gcgagccaag ctcgaacagc gccagcccga cgtggggcag ccagtgtcgg cggccatgcc
     1981 tgaactcgcc cgtgacgaac ggggtggcgg cgagggccag cgcgcccaga gcgtcgatcg
     2041 ccaggtgcgc cgtgtagggc agcgccttga cgatgccgag tgggtagtcg gtcacggtgc
     2101 tgtagcccgc gtggaccgct cctgccgtgc ggatctgccg gcccgcgcga gtgccctgga
     2161 tcccggcgag ccgggggaac gcggtgacca ggaacgtgcc gacgctgtag tcggtggcgc
     2221 cgtggagggt cgagtcgatt ggcttaggcc gccttggcat gtcgattcct ttcagggctt
     2281 cagcacgacc ttcacgcact cgtcctgctt gtgcttgaag gtctcgaagc cgtttggcgc
     2341 ctggtcgagg cccaggcggt gcgtgacgat gaagctcggg tcgatctggc cgtcgcggat
     2401 ccgctcgtag agcgggcgca ggtacttctg gacgggggcc tggccggcgc ggagctgcag
     2461 ccccttgttc atgaaggcgc ctgaggggaa cttgtccatg atcccgccgt agacgccgat
     2521 gaccgagacg atgccgcccg ggcggcaggc caggatcgcg tcgcgcaggg catggccgcg
     2581 atccgtctcg gaccgcgtgg cctgcttcat gcggtccacc gcgtgcaggg cgccgtggcc
     2641 gtgcgcggct tccattccga cggcgtcgat gacggcatcg ggtccacggc cggcggtgag
     2701 ctccttgagc tgttcgacca cgtcggcgtc ctcggagaag ttgatgctgt ccgtcgcgcc
     2761 cgccttgttg agcgccatct ggagccggta gtcgtactgg tcgatcgcga tgatccgctc
     2821 ggcaccgagg agggcggcgc tcgcgatcgc aaactggccg accggcccgg ccccgaagac
     2881 ggcgatgacc tcgccgccct ggatgtcaca gaggtccgcg ccgaaataac cggttgggaa
     2941 gacatccgac aggaacagga cctgctcgtc gctgagctcg tcctcgatct tgatcggccc
     3001 gacgtccgcg tagggcacgc gtgcgtattc ggcctgcccg cccgcatagc
//
LOCUS       DASQWN010000173         2907 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_311573, whole genome shotgun sequence.
ACCESSION   DASQWN010000173 DASQWN010000000
VERSION     DASQWN010000173.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2907)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2907)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2907
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_311573"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            2..526
                     /locus_tag="VE686_03255"
     CDS             2..526
                     /locus_tag="VE686_03255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008961715.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:0051537 - 2 iron, 2 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="(2Fe-2S)-binding protein"
                     /protein_id="HYY83504.1"
                     /translation="MVRERKLTVLGPSPIWVSLRLNGVGRELSIEPRVSLLDALREHL
                     DLTGTKKGCDQGTCGACTVWVDGRRVLACLTLAVTCEGHDVTTIEGLTEGEELHPMQR
                     AFITHDAFQCGYCTSGQIMSAVALLEEGHASSDAEIREWMSGNICRCAAYPNIRAAIR
                     EVRDAAGENHRAAG"
     gene            513..1508
                     /locus_tag="VE686_03260"
     CDS             513..1508
                     /locus_tag="VE686_03260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013849992.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="xanthine dehydrogenase family protein subunit M"
                     /protein_id="HYY83505.1"
                     /translation="MRPVSYSRATDVADAIAAVSADPDSTFLAGGTTEVDLLRLNVVR
                     PRLLVDINPLPLNQIEDLPDGGLRIGALARMSDVAKAPGVVERFPMIAQALVLAASPQ
                     LRDMASMGGNMLQRARCSYFRDTRSACNKREPGSGCAALEGINRGHAILGTSEHCIAT
                     HPSDVAVALVALDAVVHTQGPSGERAIPIDDFFLLPGDTPHIEHPLEQGELVVAIEVP
                     AVPVARTSLYLKVRDRESYEFALASVAVALRVDDGAIGEVRLALGGVGTKPWRARRAE
                     ELLVGEPAEQASFARAAREELAPAVPRAMNEFKVELAQRTIIRALGTVATIGGAA"
     gene            1505..>2907
                     /locus_tag="VE686_03265"
     CDS             1505..>2907
                     /locus_tag="VE686_03265"
                     /inference="COORDINATES: protein motif:HMM:NF014758.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043546 - molybdopterin cofactor binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="xanthine dehydrogenase family protein
                     molybdopterin-binding subunit"
                     /protein_id="HYY83506.1"
                     /translation="MSVVPDEQRVAIGQPVDRVDGRAKVTGTGRYSAEIALPNMTYAV
                     LIGADVASGRIGAIHASEAERAEGVVAVLTHRNLPKIAAQPPLFPSLFGHAAPGETFF
                     PMQDEVVHYAGQPVAIVIAHTLERAQHAATLVRITYEETPSTTTLEQGRDQTYEPERI
                     FGGLVPGRMERGDVDAGLAEAPVRVEQTYRFAANHHNPIESSATTAVWDDDQLTLYDS
                     TQGITATRLTVAALLGLSPTRVRVITHFVGGAFGSKAMVWPHVTLAALAARQVGRPVK
                     LALTREQMFTSCGHREEQEHYVALGASGEGRLTALRHLKLSPTSPFDDWAEPSIGTDA
                     QAYACPNYEGVYRLIRANTMTPTFTRAPGEASGMFALECAMDELAYELGLDPLELRLR
                     NHADVDPVSGNPWSSKGLKECYQRGAERVGWQGRNPAPRSQRDGHWLIGLGMATAAYP
                     VPAFPGLQPQRARARLYA"
BASE COUNT          485 a         1004 c          978 g          440 t
ORIGIN      
        1 gttggtacgt gaacgcaaac taacggtgct cggccccagc ccgatatggg tttcactgcg
       61 gctcaacggg gtggggcgcg agctgtcgat cgagccgcgg gtaagcctac tcgacgcttt
      121 gcgcgaacac ctcgacctca caggtaccaa gaagggctgc gaccagggta cctgcggcgc
      181 gtgtacggta tgggtcgacg ggcggcgcgt cctggcgtgc ctgacgctcg cggtcacctg
      241 cgaaggccat gatgtgacga ccatcgaggg actaaccgaa ggcgaagaat tgcatcccat
      301 gcagcgcgcg ttcatcaccc acgacgcgtt ccagtgcggc tactgcacat cgggtcagat
      361 catgtccgcg gtagcactgc tcgaagaagg gcacgcctcg agcgacgcgg agatccgcga
      421 gtggatgagc ggcaacatct gccgctgcgc cgcctatccc aacatccgcg ctgccatccg
      481 cgaggtgcgc gacgcggccg gagaaaacca tcgtgcggcc ggttagctac tcacgcgcga
      541 cagacgtggc cgacgctatc gccgccgtca gcgccgaccc cgacagcacg ttcctcgctg
      601 gcggcacgac cgaggtcgat ctgttacgcc tgaacgtcgt gcggccgcgc ctactcgtcg
      661 acatcaaccc tttgccactc aaccagatcg aggaccttcc cgacggcggg cttcgcatag
      721 gagccctggc gcggatgagc gatgtcgcca aggcgcccgg cgtggtagag cggttcccta
      781 tgatcgccca ggcgcttgtg ctcgccgcct cgccgcagct gcgcgacatg gcctccatgg
      841 gaggaaacat gctgcaacgg gcccgctgca gttacttccg cgatacacgg tcagcctgca
      901 acaagcgcga gccgggcagc ggctgcgccg cgctggaggg catcaaccgg ggccacgcga
      961 tcctgggtac cagcgagcat tgcatcgcca cgcatccgtc ggacgtcgcg gtcgccctcg
     1021 tcgccctcga cgccgtcgtg cacacccagg ggccgagcgg tgagcgagcg atcccgatcg
     1081 acgatttctt cctacttccc ggcgatacac cgcacattga gcatccgctc gaacagggcg
     1141 agctggttgt ggcgatcgag gtgccggcag tgccggtggc gcgcacatcg ctctacctta
     1201 aggttcgcga tcgcgagtcg tatgagttcg ccctggcctc ggtggcggtg gcactccgcg
     1261 tcgacgacgg tgcgatcggc gaggtgcggc tggcgctcgg cggcgtcggc accaagccct
     1321 ggcgggcacg ccgcgccgag gagctcctgg tcggcgagcc tgcggagcaa gcgagcttcg
     1381 cccgggccgc acgcgaggag ctggccccgg cggtgccgcg ggcgatgaac gagtttaagg
     1441 tcgagctcgc acagcggacg atcatccgtg cgctcgggac ggtcgcgacg ataggaggtg
     1501 cggcatgagc gtggtgcccg acgagcagcg ggtggcgatt gggcagcctg tcgaccgcgt
     1561 cgacggccgt gccaaggtca ccggcaccgg ccgctactcc gccgagatcg ctctgcccaa
     1621 catgacatac gcagtactga tcggcgcaga cgtggcgagc ggtcggatcg gtgccattca
     1681 cgcgagcgaa gccgagcggg ctgagggcgt ggttgccgtg ctaacccatc gcaacctgcc
     1741 caagatcgcg gcgcaaccgc cgctgttccc gtcgctgttc ggtcatgccg cgcctgggga
     1801 gaccttcttc cccatgcagg acgaggtcgt gcactacgcc ggccaacctg tcgccatcgt
     1861 gattgcccac accctcgaac gcgcccagca cgcggcgacg ctggtgcgca tcacctatga
     1921 ggagacgccg tcgacgacaa ccctggagca gggccgcgac cagacctacg agccggaacg
     1981 gatcttcggg ggcttggtgc cagggcgcat ggagcgcggc gacgtcgatg ctggcctcgc
     2041 ggaggcgccc gtgcgcgtcg agcagaccta ccgctttgcc gccaaccacc acaacccaat
     2101 cgaatcttcg gccaccaccg cggtctggga cgacgaccag ctgacccttt acgactcaac
     2161 ccagggcatc acggccacgc gactgacggt cgccgcgctg ctgggcctgt cgccaacgag
     2221 ggttcgcgtc atcacgcact tcgtcggggg cgctttcggc agcaaggcga tggtctggcc
     2281 gcatgtgacg ctcgccgcgc tcgccgcccg tcaggtcgga cgcccggtca agctcgccct
     2341 gacccgcgag cagatgttca cctcctgcgg gcaccgcgaa gagcaggaac actacgtcgc
     2401 gctcggcgcg agcggggagg ggcgcctcac cgcgcttcgc cacctcaagc tctcacccac
     2461 ctcgcccttc gacgactggg ccgagccgtc catcggcacc gacgcccaag cgtatgcgtg
     2521 cccgaactat gagggcgtct accggctcat ccgcgccaac actatgacgc cgacgttcac
     2581 gcgcgccccg ggcgaggcat ccggaatgtt cgcgctggaa tgcgcaatgg acgagctcgc
     2641 ctacgagctt gggctcgacc cgctcgagtt gcggctgcgc aaccacgccg acgtcgaccc
     2701 cgtaagcggc aatccctggt cgagcaaggg actgaaggag tgctatcagc gcggcgccga
     2761 gcgcgtcggc tggcaggggc ggaacccggc gccgcgctcg cagcgcgacg ggcactggtt
     2821 gatcggcttg gggatggcga cggccgccta cccggtcccg gcttttccgg gattgcagcc
     2881 gcagcgggcg cgggcgcgcc tgtatgc
//
LOCUS       DASQWN010000174         2038 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1318936, whole genome shotgun sequence.
ACCESSION   DASQWN010000174 DASQWN010000000
VERSION     DASQWN010000174.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2038)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2038)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2038
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1318936"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..497)
                     /locus_tag="VE686_03270"
     CDS             complement(<1..497)
                     /locus_tag="VE686_03270"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HYY83507.1"
                     /translation="MAALYLGGFLGPFGGGVLVVLVPELTDVFDASTAAVTAGITVYV
                     LPFAALQLVSGTIGERLGHGRTIRWAYLSYALTSFGAALAPGIAAFLAMRSLQGASNA
                     FTSPLLLAALAEASTSERLGRSMGTFASVQTAGMVMAPLCGGLIGALDPRLAFAVPGL
                     AALVLA"
     gene            complement(542..1111)
                     /locus_tag="VE686_03275"
     CDS             complement(542..1111)
                     /locus_tag="VE686_03275"
                     /inference="COORDINATES: protein motif:HMM:NF037735.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD domain-containing protein"
                     /protein_id="HYY83508.1"
                     /translation="MPDLSPPQAFLMTNSGDVFDTPLLFVDIDGVISLFGFPADRRPA
                     GDWLNVDGVVHLISATASEHLLRLAGTFDLVWCSGWEDKADEHLVHALRLPARLPFLT
                     FSRAPSTSHWKLDAVIAHAGARPAAWIDDAFDDECRAWAVARDAPTLLVATDPAVGLT
                     APHVEALEEWARRRLAPFRAAMPSSDEPE"
     gene            1229..>2038
                     /locus_tag="VE686_03280"
     CDS             1229..>2038
                     /locus_tag="VE686_03280"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY83509.1"
                     /translation="MSLQIGILLAFLCAIASNLGFFYKQRGACACAKVDIRHPLRSAK
                     ALWTSKWFAIGMLVGGGGWALHVAAISLAPLSVVQVVLSGGVVLIAVMADRLFGFSVG
                     RRQWWGLALTAVGLVLLGITMPDPEGSHSTFSSAGLIAFETALLGMGGLLILGPRAGA
                     PAEHHGVMLAAAAGILFGVCNVAVKALSGMVGADGLAGLASPALLVAGCASAAAFYAS
                     ARSLQDGEAVEVIAITGTAANIAGIAGGIIVFGDPMPGTAWGIAIQGLAFVL"
BASE COUNT          281 a          743 c          735 g          279 t
ORIGIN      
        1 gcgagcacga gcgcggcgag gccgggcacc gcgaaggcca gccgcgggtc gagcgccccg
       61 atcaggccgc cgcacagcgg cgccatgacc atgcccgcgg tctggaccga cgcgaacgtg
      121 cccatgctgc gcccgaggcg ctcggacgtg ctcgcctcgg cgagcgcggc gagcagcagc
      181 gggctcgtga acgcgttcga cgcgccctgc agcgagcgca tcgcgaggaa cgccgcgatc
      241 cccggggcca gcgcggcgcc gaacgacgtg agcgcgtagg acagatacgc ccagcggatc
      301 gtccgcccgt gcccgaggcg ctcgccgatc gtgccggaga cgagctgcag cgccgcgaac
      361 gggaggacgt agacggtgat gccggcggtt accgccgcgg tcgaggcgtc gaagacgtcc
      421 gtgagctcgg ggacgagcac gacgaggacg ccgcccccga acggcccgag gaagccgccg
      481 aggtagagcg cggccatggc cgcgctctcg cgtccccagc gggcgccggg cgccggggcc
      541 gtcactcggg ctcgtcgctg gagggcatcg ctgcccggaa gggtgccaga cggcgccgcg
      601 cccactcctc caacgcctcg acgtgcgggg cggtgagccc gacggcggga tcggtggcga
      661 cgagcagcgt cggcgcgtcg cgcgcgaccg cccaggcccg gcactcgtcg tcgaacgcgt
      721 cgtcgatcca tgccgccggg cgcgctccgg cgtgggcgat cacggcgtcg agcttccagt
      781 gcgaggtcga cggagcgcgg gagaaggtga ggaacggcag gcgagcgggc agacgtagcg
      841 cgtgcaccag gtgctcatcg gccttgtcct cccacccgct gcaccacacg aggtcgaacg
      901 tgcccgcgag tcggagcagg tgctcggagg cggtggccga aatgagatgc acgacgccgt
      961 ccacgttcag ccagtcgccg gctggacgcc tgtccgcggg gaacccgaac agcgagatca
     1021 cgccgtcgat gtcgacgaac agcagtggag tgtcgaacac gtcaccggaa ttcgtcataa
     1081 gaaacgcctg gggcggggac agatcgggca tcccttcgtt aacgtggtgc cccgcttcgg
     1141 gtcaagagga gggcctgagg tgccgatgac tgggtcagcg atcggcgcct tgattctgac
     1201 tcgaccggcg cactgaccca ctttctccat gagcctccag atcggcatcc tgctcgcgtt
     1261 cctctgcgca atcgcgtcga acctgggctt cttctacaag cagcgcggcg cctgcgcctg
     1321 cgcgaaggtc gacatccgcc acccgctgcg cagcgccaag gcgctgtgga cctccaagtg
     1381 gttcgcgatc ggcatgctcg tcggtggcgg cggctgggcg ctgcacgtcg cggcgatctc
     1441 gctggccccg ctgtcggtcg tccaggtcgt gctgagcggc ggcgtcgtcc tgatcgccgt
     1501 catggccgac cgcctgttcg gcttctccgt cggccgccgg cagtggtggg gcctggcgct
     1561 caccgccgtc ggcctggtcc tgctgggcat cacgatgccc gacccggagg gctcgcactc
     1621 gaccttctcc tcggccggcc tcatcgcctt cgagaccgcc ctgctcggca tgggcggcct
     1681 gctcatcctc ggcccgcgcg ccggcgcccc cgccgagcac cacggcgtca tgctcgccgc
     1741 cgcggccggc atcctgttcg gcgtctgcaa cgtcgccgtg aaggcgctga gcggcatggt
     1801 cggcgccgac ggcctcgcgg gcctcgcgag cccggcgctc ctcgtcgcgg gctgcgcgtc
     1861 cgccgccgcg ttctacgcct cggcccgcag cctccaggac ggcgaggccg tcgaggtcat
     1921 cgcgatcacc ggtaccgcgg ccaacatcgc cggcatcgcc ggcgggatca tcgtcttcgg
     1981 cgacccgatg cccggcaccg cctggggcat cgcgatccag ggcctcgcct tcgtgctc
//
LOCUS       DASQWN010000175         2414 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_28867, whole genome shotgun sequence.
ACCESSION   DASQWN010000175 DASQWN010000000
VERSION     DASQWN010000175.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2414)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2414)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2414
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_28867"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..243
                     /locus_tag="VE686_03285"
     CDS             <1..243
                     /locus_tag="VE686_03285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019404932.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4a-hydroxytetrahydrobiopterin dehydratase"
                     /protein_id="HYY83510.1"
                     /translation="WDVRDDARRIERTFRFKTFAEAFAFVQRVAAIAEAEGHHPDVTF
                     GWGYATVSLYTHKIKGLHENDFIIAAKIDRIEGAAP"
     gene            240..845
                     /locus_tag="VE686_03290"
     CDS             240..845
                     /locus_tag="VE686_03290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018699344.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF938 domain-containing protein"
                     /protein_id="HYY83511.1"
                     /translation="MTVAIKAPSPERNKEPILEVLRRVLPGRGLVLEVASGTGQHAAH
                     FAAALPGLIWQPSDPDADMHPSIAAWAAAAGAANVRPALLLDVRSRPWPLEAADAVVC
                     INMIHIAPWAAAVHLVQGAARLLGAGAPLVLYGPYRREGRHTAPSNEAFDADLRRRNP
                     EWGVRDLEAVAALAAENGFALQEVIEMPANNLTVVFRRVAT"
     gene            complement(852..1298)
                     /locus_tag="VE686_03295"
     CDS             complement(852..1298)
                     /locus_tag="VE686_03295"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY83512.1"
                     /translation="MGGTIAAQSATAAGLALVLASCVSPEPPAYRGEDLPRPETLKIE
                     QQILDWAPKFFAEPSSITAAGISAPVPHVFGPARAWLVCIEYDTRERGGAYIGRRRLA
                     FGIGPGTFYPPLGRGPNTVPNGVCDTLPLAWRPFPALERIGLPARR"
     gene            complement(1366..>2414)
                     /locus_tag="VE686_03300"
     CDS             complement(1366..>2414)
                     /locus_tag="VE686_03300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018459737.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hydrolase"
                     /protein_id="HYY83513.1"
                     /translation="EFSRRTGVQRVALVANSRGGYPIRNMLQNGGGDGVSHVVLCGVP
                     NHGVYDWDEGVGGEFNGRGPFLRRLNAGDSEVTPGTAYLTIRSDGNDKYAQPDGRFVG
                     KPGVPTGVTAEGPALRGATNTVLPGLDHREVAFDPRAFREMYRFIAGAEPARIAIAPE
                     PRVTLDGLVTGLAGAVPTNRPVAGASVEIYRVSGETGERMGERIHQATTAVDGRWGPA
                     TVDPASSLEIVVSVPGAPITHYYRSPFPRSSRVVHLRPGRALGQADQGAGAVVLMTRP
                     RGYFGLPRDVVLLDGREPKDVTPGVPTDSTTTVRLPAGEVGRAVVALFNEERIVARAW
                     PAAENRITVAELTF"
BASE COUNT          338 a          876 c          872 g          328 t
ORIGIN      
        1 tgggacgtgc gcgacgacgc ccgccgcatc gagcggacgt tccgcttcaa gaccttcgcc
       61 gaggccttcg ccttcgtgca gcgcgtcgcc gcgattgccg aagcggaggg acaccacccc
      121 gacgtcacct tcggctgggg ctatgcgacg gtctcgctct acacacacaa gatcaagggc
      181 ctgcacgaga acgacttcat catcgccgcg aagatcgacc gcatcgaagg cgccgcgccg
      241 tgaccgtggc catcaaggcg ccgtcgcccg agcgcaacaa ggaaccgatc ctcgaggtgt
      301 tgcggcgggt gctgccgggg cgcggcctcg tgctcgaggt ggcgagcggg accgggcagc
      361 atgccgcgca cttcgctgcg gccctgccgg gcctcatctg gcagccgagc gatcccgatg
      421 ccgacatgca cccgtccatc gcggcatggg ccgcagccgc gggcgccgcg aacgtgcggc
      481 ccgcgctcct cctcgacgtg cgctcccggc cgtggccgct cgaggccgcc gacgcggtcg
      541 tctgcatcaa catgatccac atcgccccgt gggccgccgc cgtgcacctc gtccaaggcg
      601 cggcgcggct cctcggggcc ggcgccccgc tcgtcctcta tgggccctac cgccgggaag
      661 gccgtcacac ggcgccatca aacgaggcct tcgacgcgga cctgcgccgc cgcaatccgg
      721 agtggggcgt gcgcgacctc gaggccgtcg cggccctcgc cgccgaaaac ggcttcgcgc
      781 tgcaggaggt catcgagatg ccggccaaca acctgaccgt cgtgttccgc cgcgtcgcga
      841 cgtgacgcct ctcagcgtcg ggctggcagc ccgatgcgct cgagggccgg gaacggacgc
      901 caggccagcg gaagcgtgtc gcagacgcca ttcgggaccg tgttggggcc gcgtccgagc
      961 gggggataga acgtgcccgg cccgatgccg aaggcgagcc gccggcgccc gatgtaggcg
     1021 ccgccccgct cgcgcgtgtc gtactcgatg cacacgagcc acgcccgggc gggaccgaac
     1081 acgtgcggca cgggcgcgct gatccccgct gcagtgatcg aggacggctc ggcgaagaac
     1141 ttcggcgccc agtcgaggat ctgctgctcg atcttcagcg tctcggggcg gggaaggtcc
     1201 tctccgcggt acgccggcgg ttcgggcgag acgcaggagg cgaggacgag agccagtccg
     1261 gcggcggtcg ccgactgcgc tgcgatggtt ccgcccacgg ctcaacgctc cttcgttccc
     1321 ggcccgggtc tacccgatcc gcgcgggcgg cgccaacccg aatggtcaga acgtgagctc
     1381 ggcgacggtg atgcgattct ccgccgccgg ccaggcccgt gccacgatcc gctcctcgtt
     1441 aaacagggcg acgaccgcgc ggccgacctc gcctgcgggc agccggacgg tcgtcgtcga
     1501 gtccgtcggc acgccgggcg ttacgtcctt cggctccctg ccgtcgagga gcaccacgtc
     1561 gcgcggcagg ccgaaatacc cgcgcggccg cgtcatgagg acgacggcgc cggcgccctg
     1621 gtcggcctgg ccgagcgcgc gtccggggcg gaggtggacg acgcgcgagg accgcggaaa
     1681 cggcgagcgg tagtagtggg tgatcggcgc gcccggcacg gacacgacaa tctcgaggga
     1741 cgaggccgga tcgaccgtgg ccgggcccca gcgcccatcg acggcggtcg tcgcctgatg
     1801 gatgcgctcg cccatgcgtt cgccggtctc gccggagacg cggtagatct cgaccgacgc
     1861 gcccgccacg ggtcggttcg tcggcaccgc gcctgcaagg ccggtcacga gcccgtcgag
     1921 ggtgacgcgg ggctcgggcg cgatggcgat ccgggccggc tcggcgccgg cgatgaagcg
     1981 gtacatctcc ctgaacgccc gcgggtcgaa ggccacctcg cggtggtcga ggccggggag
     2041 gaccgtgttg gtggcaccgc ggagcgccgg accctccgcg gtcacgccgg tcggaacgcc
     2101 cggctttccg acgaagcggc catccggttg cgcgtacttg tcgttcccgt cgctgcggat
     2161 cgtcaggtat gcggtgccgg gcgtcacctc gctgtcaccg gcgttcaacc tgcgcaggaa
     2221 cggtccacgg ccgttgaact cgcctccgac gccctcgtcc cagtcgtaga cgccatggtt
     2281 cgggacgccg cagagcacga cgtggctgac gccgtcgccg ccgccgttct ggagcatgtt
     2341 gcggatcggg tagccgccgc gggagttcgc gaccagggcc acccgttgca cgcccgtgcg
     2401 gcggctgaac tcgg
//
LOCUS       DASQWN010000176         2207 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1319181, whole genome shotgun sequence.
ACCESSION   DASQWN010000176 DASQWN010000000
VERSION     DASQWN010000176.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2207)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2207)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2207
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1319181"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(42..1217)
                     /locus_tag="VE686_03305"
     CDS             complement(42..1217)
                     /locus_tag="VE686_03305"
                     /EC_number="1.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012330113.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004024 - alcohol dehydrogenase activity,
                     zinc-dependent [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_function: GO:0030554 - adenyl nucleotide binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="zinc-dependent alcohol dehydrogenase"
                     /protein_id="HYY83514.1"
                     /translation="MKALVWHNPTDIRCDEVPDPQIEHPRDAILKVTTCAICGSDLHL
                     YNGYMPGMQNGDIVGHEFMGEVMEVGPEAKGSLKVGDRIVVPFTIFCGECEQCRRGNF
                     SVCEVSNRNKQVADKLFGHTTAGLFGYTHLTGGYQGGQAEYVRIPFADKTHIKVPKTG
                     LTDEQVLFLGDIFPTGWQAAVQCDIEPTDTVAIWGCGPVGQMAIRSAILLGAKQVIAI
                     DRVPERLDMAEAGGAVTINFETESVIERLQDLTNGKGPEKCIDCVGMEAHITSHLDSM
                     YDRVKQTVMAETDRPHVLREMIYVCRPAGTISIPGVYGGLLDKIPFGASMNKGLTWRM
                     GQTHVNRWTDDLLRRIEEGQIDPSFVITHTVPLDQGPEMYKTFRDKKDNCIKVVLKP"
     gene            complement(1457..2074)
                     /locus_tag="VE686_03310"
     CDS             complement(1457..2074)
                     /locus_tag="VE686_03310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013947768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR02466 family protein"
                     /protein_id="HYY83515.1"
                     /translation="MAVIETLFVTRLYRAEVGPAGDRLNAELDGACRSIAQDDEAGQH
                     WCRKHGYPGYTSYASLSDLPWRFPVFGDLVRRLDRHVAAFGKALELDLKGRKLALDSI
                     WINVLPPGGVHTSHIHPHSVVSGTYYVAVPKGASAIKFEDPRLGFMMAAPPKKPKAAQ
                     DNRPFVYVTPSPGSVLLWESFVRHEVPLNEADEERISISFNYRWD"
BASE COUNT          338 a          726 c          761 g          382 t
ORIGIN      
        1 gcggcgaagc gccacccccg ccggggtgcg gccccggggc ctcagggctt gaggaccacc
       61 ttgatgcaat tgtccttctt gtcccggaac gtcttgtaca tctcggggcc ctggtcgagc
      121 gggacggtgt gggtgatgac gaacgacgga tcaatctgac cctcttcgat gcggcgcagg
      181 aggtcgtcgg tccagcggtt cacgtgggtc tggcccatgc gccaggtcag ccccttgttc
      241 atcgacgcgc cgaacgggat cttgtcgaga agcccgccgt acaccccggg gatcgagatg
      301 gtgccggccg gccggcagac gtagatcatc tcgcgcagga cgtgcgggcg atccgtctcg
      361 gccatgacgg tctgctttac ccggtcgtac atcgagtcca ggtggctcgt gatgtgagcc
      421 tccatgccga cgcagtcgat gcacttctcg gggcccttgc cgttggtcag atcctggagg
      481 cgctcgatca cgctctcggt ctcgaagttg atggtcacgg cgccgccggc ctcggccatg
      541 tcgagccgct cgggcacgcg gtcgatggcg atgacctgct tggcgccgag cagaatcgcc
      601 gagcggatcg ccatctgtcc gacggggccg cagccccaga tggccaccgt gtcggtcggc
      661 tcaatgtcgc attgcacggc cgcctgccag ccggtcggga agatgtcccc gaggaacagc
      721 acctgctcgt cggtgaggcc ggtcttcggc accttgatgt gggtcttgtc ggcgaagggg
      781 atgcgcacgt actcggcttg ccccccctga tagccgcccg tgagatgggt gtagccgaac
      841 agccccgccg tggtgtgccc gaacagcttg tcggccacct gcttgttccg gttcgagacc
      901 tcgcagacgg agaagttgcc gcgccggcac tgctcgcact cgccgcagaa aatcgtgaac
      961 ggcacgacga tgcggtcgcc caccttgagc gagcccttgg cctccggtcc gacctccatc
     1021 acctcgccca tgaactcatg gccgacgatg tcgccgttct gcatccccgg catgtacccg
     1081 ttgtagaggt gcagatcgga gccgcagatg gcgcaggtgg tgaccttgag gatcgcatcc
     1141 cggggatgct cgatctgagg atccggcacc tcgtcgcagc ggatgtccgt cggattgtgc
     1201 cagaccaggg ctttcatgga agacctctcg cgaactcagg ggcggccacg aggcgcgcct
     1261 tcagtctcgg ggcgtcgggg gctgacgacg ccctgcccgc atgaaccgcg ccggtcggcg
     1321 aagtgttcct gaggggcccc gatttcgtcg gcgcaccgct gcgcttcact gcgggcacca
     1381 tgctaacgaa agcggtggac ggcgtcgccg cacgcgccac cgttgggccc ctgagccaag
     1441 ctgcactgcg gccgggtcag tcccagcggt agttgaagct gatgctgatg cgttcctcgt
     1501 ccgcctcgtt gagcggaacc tcgtggcgca cgaagctctc ccacaggagc acgctgccgg
     1561 gcgagggcgt cacgtagacg aaagggcgat tgtcctgggc cgccttcggc ttcttgggcg
     1621 gcgccgccat catgaagccg agccgcgggt cctcgaactt gatggcgctc gcgcccttcg
     1681 ggacggcgac gtagtaggtg ccgctgacca cggaatgcgg gtggatgtgc gatgtgtgca
     1741 cgccaccggg cggcagcacg ttgatccaga tcgagtcgag cgcgagcttg cggcccttga
     1801 ggtcgagctc gagcgccttg ccgaacgcgg ccacgtggcg gtcgagccgg cgtacgaggt
     1861 ctccgaacac cggaaagcgc caaggcagat cggacagcga cgcatacgag gtgtagcccg
     1921 ggtagccgtg cttgcggcac cagtgctgcc cggcctcgtc gtcctgcgct atcgagcggc
     1981 aggcaccgtc gagctcggcg ttcagacgat cgcccgcagg accaacctcg gcccggtaca
     2041 accgcgtgac gaagagggtt tcgatgaccg ccatgccggg cccttaggcg gggcagggcg
     2101 gcgtgtcaaa ggaacctcag ctcgccttgc gcatgcggcc ggaggcgcca cgcgccgcag
     2161 ccgggcgggc cgccttcggc ttgcggtcgc ctgaggcggc tttcgac
//
LOCUS       DASQWN010000177         2533 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_623788, whole genome shotgun sequence.
ACCESSION   DASQWN010000177 DASQWN010000000
VERSION     DASQWN010000177.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2533)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2533)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2533
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_623788"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..270)
                     /locus_tag="VE686_03315"
     CDS             complement(<1..270)
                     /locus_tag="VE686_03315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015930002.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid ABC transporter
                     permease"
                     /protein_id="HYY83516.1"
                     /translation="MRSGLVRDLGMSGLLLAVLLILPALIPHPALRDFLIYFMAYGLL
                     AMSLNLLVGLTGLVSFGHAAYFATGAYAFGLLMQSGKVSIPVAFVA"
     gene            complement(270..1172)
                     /locus_tag="VE686_03320"
     CDS             complement(270..1172)
                     /locus_tag="VE686_03320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011085968.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0015803 - branched-chain amino acid
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid ABC transporter
                     permease"
                     /protein_id="HYY83517.1"
                     /translation="MNLEALVDCVSSSSCAVTQISTALIVGMLLFMVTSGLSLIFGVL
                     GVINFAHGAFYMMGAYFAFAAYQLTESFFVAFAAGAVGVGLLGIIFERLVMSRVYGRD
                     VLMQLLVCYAIILILDDVVKIVFGAEYRMMGMPAAFALPPLEIAGGFIPAYYVFMIGA
                     SLAMGLALWLGINKTRLGKIVRALAINPQMVGALGVNTKLLYAGVFGVGSVLAGIAGA
                     LAAPMRTLTPGMGVSILIESFIVTVIGGMGSIAGALIAALLIGFTRAFGAIGFPLFVD
                     GMMFAIMALVLIVKPSGLLGRETA"
     gene            complement(1299..>2533)
                     /locus_tag="VE686_03325"
     CDS             complement(1299..>2533)
                     /locus_tag="VE686_03325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015930004.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HYY83518.1"
                     /translation="RRQVLGGLAAGAAITGFPHIAGAQAKAIRIGMPTILSGRVAILG
                     TSSRAAVQLAIKEINDAGGIAGRKLELVDRDSKGRPDEAAKVTRDLINNDGCEVIIDG
                     EASSGSFAVHEVIRDLGVLCIHTCSETSSLTADPKLHVKTAFRSARQGIHDAVAGGTY
                     ASEISKAKGLKRWMTCSPDYAYGRDNTAEFLEFAKIFDPGIEVVDQVWPKLFAPDYTE
                     SITKILQVKPQAVYSALWGGDLVAFIEQSNLYRLFANTAYFSGGLGDPPVLTAIKQLP
                     QGLNTAYRYNRNYPNNPANVAYAEGFAKIAGHESTNWGWQNYLAMSFLAEALKRTGGK
                     TDGTALATEMKGMKLKSPFAVDGEITMRDSDHTIIGYPVAWGRTVPKPPYVEDFVPVE
                     WAKILEHEASWKKSKGYA"
BASE COUNT          458 a          818 c          865 g          392 t
ORIGIN      
        1 cgccacgaac gcgaccggga tggacacctt gcccgactgc atcaggagtc cgaacgcata
       61 cgcgccggtg gcgaagtagg cggcatggcc gaacgagacg agaccggtga gcccgacgag
      121 caagttcaac gacatggcga gcaggccgta ggccatgaag tagatgagga agtcccgcag
      181 cgccggatgg gggatgaggg ccggcaagat gagcagaacc gccagcagca ggcccgacat
      241 gccgagatcg cggacaagac ccgagcgcat cacgcggtct cccgcccgag aaggccgctc
      301 ggcttgacga tcagcaccag tgccatgatg gcgaacatca tgccgtcgac gaagagcggg
      361 aagccgatcg ccccaaaggc gcgcgtgaag ccgatcagca aggcggcgat cagcgcgccg
      421 gcgattgagc ccatgccgcc gatcaccgtc acgatgaagc tttcgatgag gatcgacacg
      481 cccatcccgg gggtcagcgt gcgcatgggc gcggcgagag cgccggcgat cccggcgagc
      541 acgctgccga cgccgaacac gccggcgtag aggagcttgg tgttgacgcc gagcgctccg
      601 accatctgcg ggttgatggc aagcgcccgg acgatcttgc cgagccgcgt cttgttgatg
      661 ccgagccaga gcgcgagccc catcgccagg ctcgcgccga tcatgaacac gtaataggcc
      721 gggatgaagc cgcccgcgat ctcgagcggc ggcagcgcga aagcggccgg catacccatc
      781 atccggtatt cggcgccgaa gacgatcttc accacgtcgt cgaggatgag gatgatggcg
      841 tagcacacga gaagctgcat gaggacgtcg cgcccgtaga cgcggctcat gaccaggcgc
      901 tcgaagatga tgccgaggag cccgacgccc accgcgccgg ctgcgaaggc gacgaagaag
      961 ctctcggtca gctggtaggc cgcgaaggcg aaatacgccc ccatcatgta gaaggcgccg
     1021 tgcgcgaagt tgatgacgcc gagcacgccg aagatcagcg acaggcccga cgtcaccatg
     1081 aacagcagca tgccgacgat gagcgccgtc gagatctgtg tcaccgcgca ggaactcgac
     1141 gacacgcagt cgaccagggc ctcgagattc accgcgactt ccccttatgc ggccgtcggc
     1201 cgacgccgaa ccggccgaag cacgcaagat caattatcgg aagcggcccc cctcagggcc
     1261 ggccgcttcc cttggccagc gcgttcaggc gacgtcgctt aggcgtagcc cttgctcttc
     1321 ttccacgatg cctcgtgctc gaggatcttc gcccattcga cggggacgaa gtcctcgacg
     1381 taagggggct tcggcacggt gcggccccac gcgacgggat agccgatgat ggtgtggtcc
     1441 gagtcccgca tggtgatctc gccgtctacc gcgaacggcg acttgagctt catgcccttc
     1501 atctcggtgg cgagcgccgt gccgtcggtc ttgccgcccg tacgcttcag ggcctcggcc
     1561 aggaagctca tggcgaggta gttctgccag ccccagttcg tggactcgtg gccggcgatc
     1621 ttggcgaagc cttccgcata ggcgacgttc gccgggttgt tggggtagtt cctgttgtag
     1681 cggtaggccg tgttgaggcc ttgcggcagc tgtttgatgg ccgtgaggac cggcggatcg
     1741 cccaagcctc cggagaagta cgcggtgttg gcgaacaggc ggtacagatt gctctgctcg
     1801 atgaaggcga cgaggtcgcc accccacagg gcggagtaga ccgcctgcgg cttcacctgg
     1861 aggatcttgg tgatgctctc cgtgtagtcc ggcgcgaaga gcttcggcca cacctgatct
     1921 acgacctcga tccccggatc gaagatcttg gcgaactcca ggaactcggc cgtgttgtcg
     1981 cggccgtagg cgtagtcggg cgagcaggtc atccagcgct tcaggccctt ggccttcgag
     2041 atttccgagg cgtaggtccc gcccgcgacg gcgtcgtgga tgccctgccg cgcggagcgg
     2101 aacgccgtct tcacgtgcag cttcggatcg gccgtgagcg acgacgtctc cgagcaggtg
     2161 tggatgcaga gtacgccgag gtcccggatc acctcgtgca cggcgaagga tccggaggac
     2221 gcctcgccgt cgatgatgac ctcgcagccg tcgttgttga tgaggtcgcg cgtgaccttc
     2281 gcggcctcgt cgggccggcc cttcgagtcg cggtcgacga gctcgagctt gcggccggcg
     2341 atgccgcccg cgtcgttgat ctccttgatg gcgagctgaa cggccgcccg cgaggaagtc
     2401 ccgaggatcg cgacgcggcc cgacaggatg gtcggcatgc cgatccggat cgccttggcc
     2461 tgcgcccccg cgatgtgcgg gaacccggtg atcgcggcgc ccgccgccag cccgcccagc
     2521 acctgccggc gcg
//
LOCUS       DASQWN010000178         2164 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1418912, whole genome shotgun sequence.
ACCESSION   DASQWN010000178 DASQWN010000000
VERSION     DASQWN010000178.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2164)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2164)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2164
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1418912"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            251..1144
                     /locus_tag="VE686_03330"
     CDS             251..1144
                     /locus_tag="VE686_03330"
                     /inference="COORDINATES: protein motif:HMM:NF013539.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MurR/RpiR family transcriptional regulator"
                     /protein_id="HYY83519.1"
                     /translation="MKRTGSPTAQAPHEASGHQTLSAYIQARFDEFSRSQKDVAQYIV
                     DHLDEVAFQTAEELARRANTSSSTVVRFSQALGFEGFPELQGSAREEYRRRVAAGLAS
                     ANGDAPTAAAPLFSLDQSEFETAVAADHVNVEETARRVSRRDVEAAIDAISQARRVLI
                     AGTDQMAFFASYLRHLLMLLDLQADLVASPSQEALSRLGRIDAETLVIGLSAGRPHPL
                     VVRAMKLARHRKARTVAITDATLSEVAKLAQVRLYYSSNSPAYVRSHTALLSVIQALA
                     YGVYSRDAEQYADRIKAFRLK"
     gene            1176..2060
                     /gene="pdxS"
                     /locus_tag="VE686_03335"
     CDS             1176..2060
                     /gene="pdxS"
                     /locus_tag="VE686_03335"
                     /inference="COORDINATES: protein motif:HMM:NF003215.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0042823 - pyridoxal phosphate biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal 5'-phosphate synthase lyase subunit
                     PdxS"
                     /protein_id="HYY83520.1"
                     /translation="MRDEATFRTKAGLAEMLKGGVIMDVVTPEHAKIAEDAGAAAVMA
                     LERVPADIRRDGGVARMSDPAMIKGIQEAVTIPVMAKARIGHFAEAQVLESLEVDYID
                     ESEVLTPADEAHHIDKWAFGVPFVCGATNLGEALRRISEGAAMIRSKGEAGTGDIVEA
                     VRHLRAITGEIRRLTTLDEPEIFGAAKALQAPHDLVRRVAQAGRLPVPLFCAGGIATP
                     ADASLVMQLGAEAVFVGSGIFKSEDPAVRAAAIVEATTHFRDPARVAKASEGLGTPMQ
                     SLEARKLDEGQLLANRGW"
BASE COUNT          312 a          817 c          759 g          276 t
ORIGIN      
        1 gacttgaggc ggcaacccgg gtggcggacg ggtttgcggt gcgacgaccc gggaacgcct
       61 tcagcacaac gcgaggggac ggattcggcg cacatacccc cgccccgccc cctcgctccc
      121 gcggacccgc cgggcctggc ccggcggggc cgtgacctct ccctcgcggc gcccgcgcgc
      181 gccgtgtcgc gctccggccg gcggcctttg aaggaaggcg cgccgcggcc gtcgaacaac
      241 gggcctgccc atgaagcgga cgggatcgcc cacggcgcag gcccctcacg aggccagcgg
      301 ccaccagacc ctctcggcgt acatccaggc gcggttcgac gagttctcgc gctcgcagaa
      361 ggacgtcgcg cagtacatcg tcgatcacct cgacgaggtc gccttccaga ccgccgagga
      421 gctcgcccgg cgcgcgaaca cgtcgagctc gacggtggtg cggttctcgc aggcgctcgg
      481 cttcgagggc ttccccgagc tgcagggctc cgcgcgcgag gagtaccgcc gccgcgtcgc
      541 ggccgggctg gcgtcggcga acggcgacgc gccgaccgcc gccgcgccgc tgttctcgct
      601 cgaccagagc gagttcgaga ccgccgtcgc cgccgaccac gtcaacgtcg aggagaccgc
      661 gcggcgcgtc agccgccgcg acgtcgaggc ggcgatcgac gccatcagtc aggcccgccg
      721 ggtgttgatc gccggcaccg accagatggc gttcttcgcc agctacctgc gccacctgct
      781 gatgctgctc gacctccagg ccgacctcgt cgcgagcccg tcgcaggagg cgctcagccg
      841 gctcgggcgc atcgacgccg agacgctggt catcgggctg tcggccgggc gcccgcatcc
      901 gctcgtcgtg cgcgcgatga agctcgcccg gcatcgcaag gcgcgcacgg tcgcgatcac
      961 cgacgcgacg ctgtccgagg tcgccaagct cgcgcaggtg cggctgtact actcctcgaa
     1021 cagcccggcc tacgtgcgct cgcacaccgc gctgctcagc gtcatccagg cgctggcgta
     1081 cggcgtgtac agccgcgacg ccgagcagta cgcggatcgg ataaaggcgt tccgcctcaa
     1141 gtagggggcg ccatcgcgcc cgtacaatgg gcgcaatgcg agacgaggcg acgttccgga
     1201 ccaaggccgg cctggccgag atgctcaagg gcggcgtgat catggacgtg gtcactcccg
     1261 agcacgcgaa gatcgcggag gacgccggcg cggccgccgt catggcgctc gagcgcgtcc
     1321 ccgccgacat ccgccgcgac ggcggcgtgg cgcggatgag cgaccccgcc atgatcaagg
     1381 gcatccagga ggcggtgacc atcccggtca tggccaaggc ccggatcggc cacttcgccg
     1441 aggcccaggt gctcgagtcg ctcgaggtcg actacatcga cgagtccgag gtcctgaccc
     1501 ccgccgacga ggcccaccac atcgacaagt gggcgttcgg cgtcccgttc gtgtgcggcg
     1561 cgacgaacct gggcgaggcg ctgcgccgca tctccgaggg cgcggcgatg atccgctcca
     1621 agggcgaggc cggcaccggc gacatcgtcg aggcggtccg ccacctgcgc gcgatcaccg
     1681 gcgagatccg ccggctcacg acgctcgacg agcccgagat cttcggcgcc gccaaggcgc
     1741 tccaggcgcc gcacgacctc gtccgccgcg tggcccaggc cggccgcctg cccgtgccgc
     1801 tgttctgcgc gggcggcatc gccacgccgg ccgacgcgtc gctggtcatg cagctcggcg
     1861 ccgaggccgt gttcgtcggg tcgggcatct tcaagtccga ggacccggcg gtccgcgccg
     1921 cggcgatcgt cgaggcgacg acgcacttcc gcgacccggc ccgcgtcgcc aaggcgtccg
     1981 agggcctcgg caccccgatg cagagcctcg aggcgcgcaa gctcgacgag ggtcagcttc
     2041 tcgccaaccg gggctggtaa tcccgggcgt gacggttccg cagcgccacc ccgatcgtcc
     2101 ggcctcgaag tgctgatcgg cgtcctcgcc ctccagggcg acttcgaggc gcacaccaag
     2161 atgc
//
LOCUS       DASQWN010000179         2680 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1121179, whole genome shotgun sequence.
ACCESSION   DASQWN010000179 DASQWN010000000
VERSION     DASQWN010000179.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2680)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2680)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2680
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1121179"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1570)
                     /locus_tag="VE686_03340"
     CDS             complement(<1..1570)
                     /locus_tag="VE686_03340"
                     /inference="COORDINATES: protein motif:HMM:NF020037.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000155 - phosphorelay sensor kinase
                     activity [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidine kinase dimerization/phospho-acceptor
                     domain-containing protein"
                     /protein_id="HYY83521.1"
                     /translation="MRTVEWASAVEARLAGLVHPSVEDPVQRERHARFILVRIIAGGL
                     ALAALPAWLAWRGVPTPTECAAALALAAQLAAAVVVMRTGMLALAHAVSSAAFATVIA
                     ATAVWGGSPMLAAWLLVVPAEALLSGSLRSSAVAAALAALSLAAAATLNAFGFAPPQS
                     SSSALLTVLPVLLAAHALAHGFEGARLDRRAAGFARQDRSDAAVLHAIDDLVTWHDRN
                     GHVVDASAASTKLLGLPPAALHGRGMFGRVHVADRPAFLKAISDAASSDQPVAVQFRI
                     HVAVAAETEHGASAVQAPTAVWVEMRAHRVAGPAGAVEAGYAVVAVTRDVSEQRRRAD
                     ELEVARASAEKADALKGRFLATVSHELRTPLNAIIGFSEILGMDAGATLEAARAKEYA
                     QIIRSSGQHLLEVVNMLLDLSKIETGNFDFVPEPFDLAPLVHGCCDLVGLRAEQAGVT
                     LSREIASDLPEFVSDRRACRQILINLVSNAVKFTPAGGRITVSVRREHDRLMLVVADT
                     GIGIPEEDLPRLGDP"
     gene            1850..2071
                     /locus_tag="VE686_03345"
     CDS             1850..2071
                     /locus_tag="VE686_03345"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY83522.1"
                     /translation="MFWLMRCALAIGVLYWMSPLRQPDAGGGRDWRDVETRWREGSDK
                     VRGLALEGIGREATLGALSTLRGTRPTHP"
     gene            2119..2556
                     /locus_tag="VE686_03350"
     CDS             2119..2556
                     /locus_tag="VE686_03350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015687399.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SufE family protein"
                     /protein_id="HYY83523.1"
                     /translation="MTAQATLPSIDEIIENFELIEDWDERYRYLIELGRMMKPLPDEA
                     HSDANKVRGCASQVWLETKLDRSGPDPVLELRGDSDAHIVRGLVALLISLYSGKKPSE
                     ALATDAIGLFKSLGLAEHLTPQRSNGVRSMVERIREDARGALA"
BASE COUNT          448 a          928 c          941 g          363 t
ORIGIN      
        1 aggggtcgcc gaggcgcggg agatcctcct cggggatgcc gataccggtg tcggcaacga
       61 cgagcatgag acggtcgtgc tcgcgccgca ccgaaaccgt gatgcgcccg ccggcgggcg
      121 tgaacttcac ggcattcgac acgaggttga tgaggatctg gcggcaggca cgccggtcgg
      181 agacgaactc cggcaggtcg gacgcaatct cgcgcgacag cgtcaccccc gcctgctcgg
      241 cgcgcaggcc gacgaggtcg cagcagccgt gcacgagggg ggcgaggtcg aaaggctccg
      301 gcacgaagtc gaagttgccg gtctcgatct tcgagaggtc gaggagcatg ttgacgacct
      361 caaggaggtg ctgccccgag ctgcggatga tctgcgcgta ttccttggcg cgcgcggcct
      421 cgagcgtcgc ccctgcgtcc atgccgagga tctcggagaa tcctatgatg gcgttcaagg
      481 gcgtgcgcag ctcatggctc accgtggcaa ggaaccgccc cttgagagca tcggccttct
      541 cggccgaggc gcgggccacc tcgagctcgt cggcgcgacg gcgctgctcg gacacgtccc
      601 gcgtgaccgc caccaccgcg tagccggcct cgacagcgcc cgcaggcccg gcaacccgat
      661 gcgcccgcat ctcgacccat acggccgtcg gcgcctgaac ggcagatgct ccgtgctccg
      721 tctcggccgc gaccgccacg tggatccgga actgcaccgc aaccggctgg tccgagctcg
      781 cggcgtcgct gatcgccttc aggaaagcgg gccgatcggc gacatggacc cgtccgaaca
      841 tgccgcgtcc atgcagcgcg gcggggggca ggccgagaag cttcgtcgag gcggcgctcg
      901 cgtccacaac gtgtccgttg cggtcgtgcc acgtgacgag atcgtcgatg gcgtgaagca
      961 cggcggcgtc ggaacggtcc tggcgggcga agccggcggc ccggcggtcg agccgcgccc
     1021 cttcgaagcc gtgagccagg gcgtgggccg caagcagcac cggaagaacc gtcagcaagg
     1081 cgctcgagct ggactgcggg ggcgcgaagc cgaaggcgtt caacgtcgcc gcggcggcca
     1141 ggctaagtgc cgcgagtgcg gccgcaaccg cggacgagcg cagggacccc gaaaggagcg
     1201 cttcggctgg cacgacgagc agccacgcag caagcatcgg ggatccgccc cagactgcgg
     1261 tcgcggcgat gacggtcgcg aaggcggcgg atgacacagc gtgcgcaagg gcgagcatgc
     1321 ccgtgcgcat cacgacgacg gcagcagcca gttgcgcagc aagggccagc gccgccgcac
     1381 actcggtcgg cgtggggacc ccacgccatg caagccacgc cggaagggcc gcgagcgcaa
     1441 gcccaccggc gatgatcctc acaaggatga agcgcgcgtg gcgctcccgt tggacgggat
     1501 cctcgacgga gggatgcacg agcccggcga gtcttgcctc gaccgccgac gcccattcga
     1561 ctgtacgcaa caccgtctcg cgtcggcttg ccgcgcgctc cttgcctccg gtgccggcat
     1621 cctcgcaagc gccacttaag cgaacgctaa aagcgcgacc gcgcgaccgc gccggaagct
     1681 cgaatgaaca cggctacaag ggcccagtaa gctcgctcgc ggtgctccgg ccccgctgcg
     1741 gaaccctttg ttcatcctgt tcgcaataac gcggccggcg cgcatctctg cgacaccgtc
     1801 tgatgcctac agttccttcg gcaaacgggt ggcgggagac acgagggcga tgttctggct
     1861 gatgcggtgc gcgctggcca tcggggttct ttactggatg tcgccgttgc ggcagcccga
     1921 cgcgggcggt gggcgagact ggcgggacgt cgagacgcgc tggcgcgaag ggtccgacaa
     1981 ggttcgcggg ctggcgctcg aaggcatcgg acgcgaggcc acgctcggcg cactttcgac
     2041 cttgagaggc acgcgcccca cccacccctg acggagcgcc cgctcgcgtc cgcgcgtcgg
     2101 agcgcctata tcgcggcgat gaccgcgcaa gcgaccctgc cgtccatcga cgagatcatc
     2161 gagaacttcg agctgatcga agactgggac gagcgttacc gctacctgat cgagctcggc
     2221 cgcatgatga agcccttgcc cgacgaggcg cacagcgacg ccaacaaggt gcgcggctgc
     2281 gcgagccagg tctggctcga gaccaagctc gaccgcagcg ggcccgaccc ggtgctcgag
     2341 ttgcggggcg acagcgacgc ccacatcgtc cgcggcctcg tggccctgct gatctcgctc
     2401 tactcgggca agaagccgtc ggaggcgctc gccaccgacg ccatcggcct gttcaaatcg
     2461 ctggggctcg ccgagcacct gacgccgcag cgatcgaacg gcgtccgctc gatggtcgag
     2521 cgcatccgcg aggatgcccg cggggcgctc gcttagagcc ctacgcggcc gcacttgcgt
     2581 cgcgccagtt ccggatgcct cgggagcggt cggggcccct cgcctcgcgt tcgatgccgt
     2641 agtgctcggc gaggcgccac aacgctagcc gcacgaccac
//
LOCUS       DASQWN010000180         2679 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_907545, whole genome shotgun sequence.
ACCESSION   DASQWN010000180 DASQWN010000000
VERSION     DASQWN010000180.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2679)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2679)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2679
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_907545"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..407
                     /gene="mraY"
                     /locus_tag="VE686_03355"
     CDS             <1..407
                     /gene="mraY"
                     /locus_tag="VE686_03355"
                     /EC_number="2.7.8.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015931917.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008963 -
                     phospho-N-acetylmuramoyl-pentapeptide-transferase activity
                     [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="phospho-N-acetylmuramoyl-pentapeptide-
                     transferase"
                     /protein_id="HYY83524.1"
                     /translation="YLGIHFVPRTGELAVVCGALLGAGIGFLWFNAPPAQVFMGDTGS
                     LALGGLLGAVAIAAKHEFALAIAGGLFVLEAASVIIQVFVYKRTGRRVFLMAPIHHHF
                     EKRGWAEPQIVIRFWIISVVLALGALATLKLR"
     gene            404..1798
                     /gene="murD"
                     /locus_tag="VE686_03360"
     CDS             404..1798
                     /gene="murD"
                     /locus_tag="VE686_03360"
                     /EC_number="6.3.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009764008.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008764 -
                     UDP-N-acetylmuramoylalanine-D-glutamate ligase activity
                     [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-L-alanine--D-glutamate
                     ligase"
                     /protein_id="HYY83525.1"
                     /translation="MTPATTFAGRTVALFGLGGSGIATALALQAGGAEVVAFDDNPKS
                     LAKASAEGVGTGDLRNADWSHFAALVLAPGVSLTHPEPHWTVPLAKAAGIEIIGDIEL
                     FCRERAKLAPGAPFVAITGTNGKSTTTALVAHVLREAGRDVQMGGNIGTAILSLAPPA
                     KDRIHVVEMSSFQIDLTPSLKPSIGVLLNMSPDHLDRHGTMENYAAIKERLIAGAALA
                     VIGVDDELSRAVAARRADAGGALLRISLEPLTDEGVFARGTTLVQVRGGRGETVAQLA
                     GIGSLRGSHNAQNAAAALAVASALGLPDEAIQAGMRSFPGLPHRMEQVGRRGGALFVN
                     DSKATNADSTEKALASFRDIFWIVGGKPKAGGITGLTSYFPKIAKAYLVGEAAEEFAR
                     TLEGRVPMTRSGTLDSAVAQAAEDAARSDAAEAVVLLSPACASYDQFPNYEVRGDRFR
                     ELVRALPGIEVNRA"
     gene            1885..>2679
                     /locus_tag="VE686_03365"
     CDS             1885..>2679
                     /locus_tag="VE686_03365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018041921.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0051301 - cell division [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FtsW/RodA/SpoVE family cell cycle protein"
                     /protein_id="HYY83526.1"
                     /translation="MMSRAERSLVGDWWWTIDRLLLAGLLALMTAGLVFLMAGGPPVS
                     ERLGLSTFHFVNRQVAYLVPALAILVAVSFLPIRQVRRLALLGYLVAMALVLAALKFG
                     PEIKGAHRWINLAGIGIQPSEFVKPAFVVLAAWAFSEGARRRDMPGALLALLLLPATI
                     VPLVLQPDFGQTMLITIVWCGMFFIAGLHWFWVFGLGGFGLVGIAAAYKFLPHVRDRI
                     ERFLDKSSGDTFQVDTALESFAKGGWLGRGPGEGVVKRILPDAHTDF"
BASE COUNT          359 a          943 c          913 g          464 t
ORIGIN      
        1 attacctcgg cattcatttc gtgccgcgga cgggcgaact cgccgtggtc tgcggcgcat
       61 tgctcggggc cggcatcggc tttctctggt tcaatgcgcc cccagcccag gtcttcatgg
      121 gcgatacggg ctcgcttgcg ctcggggggc tgctgggcgc cgtcgccatc gcggcgaaac
      181 acgaattcgc cctggcgatc gccggcgggc tgttcgtgct cgaggccgcc tcggtgatca
      241 tccaggtctt cgtctacaag cgcaccgggc gccgggtctt cctgatggcg ccgatccacc
      301 accatttcga gaagcgcggc tgggccgagc cgcagatcgt gatccgcttc tggatcatct
      361 ccgtggtcct ggcgctcggc gcgctcgcga ccctgaagct gcggtgacgc ccgccaccac
      421 gttcgcaggc cgcaccgtcg cgctgttcgg ccttggcggg tcggggatcg cgaccgccct
      481 cgcgctgcag gcaggcgggg ccgaggtcgt cgccttcgac gacaatccga agagcctcgc
      541 caaggcgtcc gccgagggcg tgggaacggg cgatctgcgc aacgccgact ggtcgcactt
      601 cgcagcgctg gtactcgcgc ccggggtatc cctgacgcac cccgagccgc actggacggt
      661 gcccctggcc aaggcagccg gcatcgagat catcggcgac atcgagctgt tctgccgcga
      721 gcgcgccaag ctcgcgccgg gagcgccgtt cgtcgccatc acgggcacga acggcaagtc
      781 gacgaccacg gcgctcgtgg cccacgtcct gcgcgaggcg ggccgcgacg tgcagatggg
      841 cgggaacatc ggcacggcta tcctctccct cgcgccgccc gcgaaggatc gcatccatgt
      901 cgttgagatg tcgtcttttc agatcgacct cacgccgtct ttgaagcctt ccatcggggt
      961 gctgctcaac atgtctcctg accacctcga ccggcacggg acgatggaga attacgccgc
     1021 catcaaggag cggctcatcg cgggggccgc cctcgctgtc atcggggtag acgacgagtt
     1081 gagccgcgcc gtcgcggctc ggcgggccga cgcgggaggc gccttgctgc ggatttcgct
     1141 cgagccgctg accgacgagg gcgtattcgc gcggggcacg acgctcgtcc aggtacgagg
     1201 cggccgaggg gagacggtgg cgcagcttgc cgggatcggt tctctgcgcg ggtcgcacaa
     1261 cgcccagaac gccgcggcgg ccttagcggt ggcgagcgct ctcggcctcc cggacgaggc
     1321 gatccaggcg ggcatgcgca gcttcccggg cctgccgcac cggatggagc aggtcggccg
     1381 ccgcggcggc gcgctgttcg tcaacgactc caaggccacg aacgccgatt cgaccgagaa
     1441 ggcgctcgcc tccttccgcg acatcttctg gattgtcggg ggcaagccca aggcgggcgg
     1501 catcacgggc ctgaccagct acttccccaa gatcgcgaag gcctacctcg tcggggaggc
     1561 ggcagaggaa ttcgcgcgca ccctcgaagg cagggtgccg atgacgcggt ccgggaccct
     1621 cgactccgcg gtcgcgcagg ccgccgagga cgcggcgcgc tcggacgcgg ccgaagcggt
     1681 ggtgctgctg tcgcctgcct gcgcttccta tgaccagttc ccgaactacg aggtgcgcgg
     1741 cgaccgcttt cgcgaactcg tccgggcgtt gccgggaatc gaggtaaacc gggcgtaaac
     1801 gagttttcgt ccattgttgt cgggcccccg ccgacgcgcc gtcagcatcg cggtgcgaat
     1861 cgcccctcga gaggccttga atcgatgatg tcacgcgcgg aacgctcgct cgtcggcgac
     1921 tggtggtgga ccatcgaccg cctgctcctc gccggcctcc tcgcgctgat gaccgcgggt
     1981 ctcgtgtttc tgatggccgg cggcccaccg gtgtccgagc gtctcgggct ctcgaccttc
     2041 catttcgtca accggcaggt cgcctacctt gtcccggccc tcgccatcct tgtcgcggtg
     2101 tcgttcctgc cgatccgcca ggtccgcagg ctcgccttgc tcggatacct ggtcgcgatg
     2161 gctctcgtcc tcgcggcgct caagttcggg cccgagatca agggcgcgca ccgctggatc
     2221 aaccttgccg gcatcggcat ccagccatcc gagttcgtga agccggcctt cgtggtgctc
     2281 gcggcctggg cgttctccga gggggcgcgc cggcgcgaca tgccgggcgc gctgctcgcc
     2341 ctcctgcttc tgccggccac catcgtgccg ctggtgctgc agccggactt cggccagacc
     2401 atgctgatca ctatcgtctg gtgcggcatg ttcttcatcg ccggcctgca ctggttctgg
     2461 gtcttcggcc tcggcggctt cgggctcgtg ggcatcgcgg cggcgtacaa gttcctgccg
     2521 cacgtgcgcg accgcatcga gcgcttcctc gacaagtcgt cgggggacac cttccaggtc
     2581 gacacggcgc tcgagtcgtt cgccaagggc ggctggctcg gccgcggccc tggcgagggc
     2641 gtcgtgaagc gcatcctgcc cgacgcccac acggacttc
//
LOCUS       DASQWN010000181         4395 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_312522, whole genome shotgun sequence.
ACCESSION   DASQWN010000181 DASQWN010000000
VERSION     DASQWN010000181.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 4395)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4395)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4395
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_312522"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(118..846)
                     /locus_tag="VE686_03370"
     CDS             complement(118..846)
                     /locus_tag="VE686_03370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007615073.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter ATP-binding protein"
                     /protein_id="HYY83527.1"
                     /translation="MIEIKHVSKWYGDFQVLKDCTTFVSKGDVVVVCGPSGSGKSTLI
                     KCVNGLEPFQKGEVTVDGVKVGDRKTNLPQLRAKVGMVFQHFELFPHLRVVENLRLGQ
                     EKVLGRSRAEADAKAMSLLERVGLTAHARKYPGELSGGQQQRVAIARALAMDPICMLF
                     DEPTSALDPEMISEVLDVMVDLAHEGMTMMVVTHEMGFARKVADRVIFMDRGEIVEDA
                     AKDEFFGQPRSERAQQFLSKILAH"
     gene            complement(859..1551)
                     /locus_tag="VE686_03375"
     CDS             complement(859..1551)
                     /locus_tag="VE686_03375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018453382.1"
                     /note="The N-terminal region of this protein, as described
                     by TIGR01726, is a three transmembrane segment that
                     identifies a subfamily of ABC transporter permease
                     subunits, which specificities that include histidine,
                     arginine, glutamine, glutamate, L-cystine (sic), the
                     opines (in Agrobacterium) octopine and nopaline, etc;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_process: GO:0015837 - amine transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease subunit"
                     /protein_id="HYY83528.1"
                     /translation="MFSNFDWDVIARSLPYLFYDGMVFTLTLTALATAGGIVLGTLIA
                     MMRLGGLPVLPWIAAGYVNLIRSLPLVLVIFWFYFLVPYIGQWVTGASRPVQVGAFTS
                     CLVTFTLFEAAYFAEIMRAGIQSIPKGQVAAGYALGLSYGKVMRYVVLPQAFRNMIPV
                     LLTQTIILFQDTSLVYVLSITDFLGAASKVAQRDGRLVEMYLFAAAVYFVISFAASSL
                     VRRLQARVAIVR"
     gene            complement(1558..2289)
                     /locus_tag="VE686_03380"
     CDS             complement(1558..2289)
                     /locus_tag="VE686_03380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018648487.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0006865 - amino acid transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HYY83529.1"
                     /translation="MSYNWNWSIFFDPSPEGVGTYLSMLLIGLRWTLVTALFSWIMAL
                     VLGSLVGVLRTLPSKGAQRFGFAYVELFRNIPLLVQMFLWFFVLPEVVPRQVGLWLKQ
                     MPDAPFYTAVVCLGFYTSARVAEQVRAGVGSLGRGQGMAGTALGLTTGQVYRYVLLPM
                     AFRIMLPPLTSEFLNNIKNTSVALTIGLLELTARARAMQEFSFQVFEAFTAATLLYLL
                     VNLVVVTLMRLLERSVRVPGYIMGK"
     gene            complement(2440..3342)
                     /locus_tag="VE686_03385"
     CDS             complement(2440..3342)
                     /locus_tag="VE686_03385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007562547.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter substrate-binding
                     protein"
                     /protein_id="HYY83530.1"
                     /translation="MRLHHIAAALGVAVLAAAPAGAQEGTLKKIKETGAISLGHRDSS
                     VPFSYLDDKQQPIGYAMDICAKIVDAVKKELKLDKLEVKLTPVTSSTRIPLIANGTVD
                     LECGSTTNNADRQKQVSFAPTHFLTASRFVTKKASNIKTIDDLKGKTVVSTAGTTNIK
                     QLNDANTEKKLGINIIPAKDHAEAFLMVETDRAVAFVMDDILLASLVAGSKEPAAYVI
                     PEAAFSLPEPYGIMLRREDPAFKKLVDQAVGDFYKSPEGKANYDKWFMKPIPPKNLTL
                     NVPMSASLQKVYEKPTDSPDPAMY"
     gene            3594..3668
                     /locus_tag="VE686_03390"
     tRNA            3594..3668
                     /locus_tag="VE686_03390"
                     /product="tRNA-Thr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:3626..3628,aa:Thr,seq:ggt)
     gene            complement(3685..3897)
                     /locus_tag="VE686_03395"
     CDS             complement(3685..3897)
                     /locus_tag="VE686_03395"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY83531.1"
                     /translation="MKKASEYRQHAEECRVLARRMAPGEHRDQLLEMAATWDNLATER
                     SELVRRHPELAIGGEHEEELRESKND"
     gene            complement(3995..4393)
                     /locus_tag="VE686_03400"
     CDS             complement(3995..4393)
                     /locus_tag="VE686_03400"
                     /EC_number="4.6.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF012437.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009975 - cyclase activity [Evidence IEA];
                     GO_function: GO:0016849 - phosphorus-oxygen lyase activity
                     [Evidence IEA];
                     GO_function: GO:0032555 - purine ribonucleotide binding
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenylate/guanylate cyclase domain-containing
                     protein"
                     /protein_id="HYY83532.1"
                     /translation="MLDKHDLILRQEVTRHRGREVKSLGDGLLATFDGPARAVRCATS
                     ICAAVRALGLQVRTGVHTGEIELVGNDIAGIAVHVAARVAALAQGGQVLVSSTVRDLV
                     AGSGLSFRNEGPHELKGLSEPLRLFSVVAG"
BASE COUNT          772 a         1419 c         1465 g          739 t
ORIGIN      
        1 cagggcgccg acagcatgca gggcgatcac ggcagcgccg gcgaccatca cctctaacga
       61 gggctgttgc gcgttgggcg cgccggtggc cgccgcgcca tcggcggccg gcgtggctca
      121 atgcgccagg atcttcgaca ggaactgctg cgcccgctcg cttcggggct gcccgaagaa
      181 ctcgtccttt gcggcgtcct cgacgatctc gccgcgatcc atgaagatca cgcggtcggc
      241 gaccttgcgg gcgaagccca tctcgtgcgt cacgaccatc atcgtcatgc cctcgtgggc
      301 gaggtccacc atcacgtcga ggacctcgga gatcatctcg ggatcgaggg ccgaggtcgg
      361 ctcgtcgaac agcatgcaga tcgggtccat ggcgagcgcc cgcgcgatgg cgacgcgctg
      421 ctgctgcccg cctgagagct cgcccgggta cttgcgcgca tgggccgtga gcccgacgcg
      481 ctcgagcagc gacatggcct tggcatcggc ctcggcgcgg ctgcggccca acaccttctc
      541 ctggccgagc cgcaggttct cgacgacgcg cagatggggg aacagctcga agtgctggaa
      601 caccatgccg accttggcgc gcagctgggg caggtttgtc ttacggtcgc cgaccttcac
      661 gccgtcgacc gtgacctccc ccttctgaaa cggctccaag ccgttgacgc acttgatcaa
      721 ggtagacttg ccggagccgg acggcccgca cacgaccacc acgtcgccct tggacacgaa
      781 ggtggtgcag tccttcagga cctggaagtc gccgtaccat ttgctgacgt gcttgatctc
      841 gatcatggcc ggcgccccct agcgcacgat ggcgacgcgc gcctgcaggc ggcggacgag
      901 cgacgaggcg gcgaacgaga tcacgaagta gaccgccgcg gcgaagagat acatctcgac
      961 gaggcgtccg tcgcgctgcg ccaccttgga agcggcgccg aggaagtcgg tgatcgacag
     1021 gacgtagacc agcgaggtgt cctggaacag gatgatggtc tgggtcagaa gcaccgggat
     1081 catgttgcgg aacgcctgcg ggagcacgac gtacctcatc actttcccat atgacagccc
     1141 gagcgcgtag ccggctgcca cctggccttt cgggatcgac tggatgccgg cgcgcatgat
     1201 ctcggcgaaa taggcggcct cgaacagcgt gaaggtgacg agacacgagg tgaaggcgcc
     1261 gacctgcacc ggccgcgacg cccccgtcac ccactgcccg atgtagggca cgaggaagta
     1321 gaaccagaag atcacgagga cgagcggcag ggatcggatc aggttcacgt aaccggcggc
     1381 gatccacggc agcaccggca acccgccaag ccgcatcatg gcgatgagcg ttccaagcac
     1441 gatgccgccg gcggtggcga gcgccgtcag cgtcagggta aagaccatgc cgtcgtagaa
     1501 caggtacggc agcgagcgcg cgatgacgtc ccagtcgaaa ttcgaaaaca tccgccgtca
     1561 cttgcccatg atgtagccgg gcacgcggac gctgcgctcg aggaggcgca tgagcgtgac
     1621 gacgacgagg ttgacgagga ggtagaggag ggtcgcggcc gtgaaggcct cgaagacctg
     1681 gaacgagaac tcctgcatgg cccgcgcccg cgcggtcagc tccaggagcc cgatggtcag
     1741 cgccacggac gtgttcttga tgttgttgag gaactccgac gtcagcggcg gcagcatgat
     1801 gcggaacgcc attggcagga gcacgtagcg gtagacctgc cccgtggtga gcccgagcgc
     1861 cgtgccggcc atgccctgcc cgcgcccgag cgagccgacg cccgcccgca cctgctcggc
     1921 gacgcgggcc gaggtgtaga agccgaggca cacgacggcg gtgtagaagg gcgcgtccgg
     1981 catctgcttc agccacaggc cgacctgccg cggcaccacc tcgggcagca cgaagaacca
     2041 caggaacatc tgcacgagga gcgggatgtt gcggaacagc tcgacgtagg cgaagccgaa
     2101 gcgctgggcg cccttcgacg gaagagtgcg caggacgccg acgagcgacc cgaggaccag
     2161 cgccatgatc cacgagaaca gcgccgtcac gagcgtccag cgcagcccga tgaggagcat
     2221 gctcaaatac gtcccgacgc cctccggcga cgggtcgaag aagatgctcc agttccagtt
     2281 gtagctcacg gatgctccgc ccgtgtcacc tctcccgcgt gcgggagagg tcgagtcgcg
     2341 aagcgaccgg gtgagggaca gattaggcgc accggctctt gccgggtcgc aactgcagcg
     2401 ccgcgtggcc tctcccgttc agcgggagag gcgtgcgcct cagtacatcg ccgggtcggg
     2461 ggagtccgtc ggcttttcgt agaccttctg cagcgacgcg ctcatgggca cgttgagggt
     2521 gaggttcttc ggcgggatcg gcttcatgaa ccacttgtcg tagttcgcct tgccctcggg
     2581 actcttgtag aaatcgccga ccgcctggtc gaccagcttc ttgaaggccg gatcctcgcg
     2641 tcgcagcatg atgccgtagg gctcgggcag ggagaaggcg gcttccggga tgacgtaggc
     2701 ggcgggctcc ttcgagccgg cgacgagcga cgcgagcagg atgtcgtcca tcacgaaggc
     2761 gacggcgcga tccgtctcga ccatcaggaa ggcctcagcg tgatccttcg cggggatgat
     2821 gttgatgccg agcttcttct cggtgttggc gtcgttgagc tgcttgatgt tcgtcgtgcc
     2881 cgccgtcgag accacggtct tgcccttgag gtcgtcgatt gtcttgatgt tgctcgcctt
     2941 cttggtgacg aaccggctcg ccgtgaggaa gtgcgtcggc gcgaaggaga cctgcttctg
     3001 gcggtcggcg ttgttggtgg tcgagccgca ctcgaggtcg acggtgccgt tggcgatgag
     3061 cgggatgcgg gtcgacgacg tcaccggggt gagcttcacc tcgagcttgt cgagcttgag
     3121 ctccttcttc acggcgtcga cgatcttggc gcagatgtcc atggcgtagc cgatgggctg
     3181 ctgcttgtcg tcgaggtagg agaacggcac cgacgaatcg cggtggccga gggagattgc
     3241 cccggtctcc ttgatcttct tgagcgtgcc ctcctgcgcg cccgcgggcg cggcggcgag
     3301 caccgcgacg ccgagcgctg cggcgatgtg atgaagtcgc attcccttat tctcctctcc
     3361 agcccggctc gggccgggtc gtatggtaaa agcggccgca cgaagcgggt ccggcggcga
     3421 tggtcaccgt tctcggcacg gatgtccact ggccacgctt tcggagggaa gcaagccgct
     3481 cgccagatcg aacactcggg caggctcgtg ccgccgcggc aggcccgcgg ccgaggccga
     3541 cagcgttgca aacccctcct cgatcctcta tctcggcccc gccgaaccgg cgcgctgcgg
     3601 tagctcagtg gtagagcact cccttggtaa gggagaggtc gagagttcaa tcctctctcg
     3661 cagcaccatc ccaaaccctt gtcttcaatc gtttttcgat tcacgaagct cctcttcgtg
     3721 ctcgccgccg atggccaact cagggtgcct gcggaccaac tccgaacgct cagtggcgag
     3781 gttgtcccag gtcgcagcca tttcgagaag ctgatcgcga tgctcacccg gtgccattct
     3841 gcgcgccagg acgcggcatt cctcggcatg ctgccggtat tctgacgcct tcttcattct
     3901 cacagtccat cggttcgtgc agcacggcgc tgccttcagg aagtgccctg gtgccatacc
     3961 ggcagaaagg aagcagctcc gacactcacg ctcgctatcc cgcgacgact gagaacagcc
     4021 gtagcggttc gctcagcccc ttgagctcat gcggcccctc gttgcggaaa ctcaatcctg
     4081 atccggctac gaggtctcgg acagtgctcg aaacaagcac ctgaccgcct tgggcgaggg
     4141 cagcgacgcg cgctgcgacg tgcacggcaa tgcctgcgat gtcgttgccg acgagctcaa
     4201 tctcgcccgt gtgcaccccc gtcctaactt gcaggccaag cgctcgcacc gcagcacaga
     4261 tgctcgtcgc acatcggacg gctcgggccg ggccgtcgaa cgtggcgagc aatccgtcgc
     4321 caagggactt tacctcgcgg ccccgatggc gcgtgacctc ttgcctgagt atcaggtcgt
     4381 gcttgtcgag cagcg
//
LOCUS       DASQWN010000182         2581 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1320417, whole genome shotgun sequence.
ACCESSION   DASQWN010000182 DASQWN010000000
VERSION     DASQWN010000182.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2581)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2581)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2581
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1320417"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..631
                     /locus_tag="VE686_03405"
     CDS             <1..631
                     /locus_tag="VE686_03405"
                     /inference="COORDINATES: protein motif:HMM:NF012517.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016705 - oxidoreductase activity, acting
                     on paired donors, with incorporation or reduction of
                     molecular oxygen [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="LLM class flavin-dependent oxidoreductase"
                     /protein_id="HYY83533.1"
                     /translation="VLSGGRLTLGIGAGWLQEEFEALQVPDFAARGQVTDEYILAAKT
                     LWTATLPRFGGEFVRFDAITFEPKPAQQGGPPIWVGGESGPAQRRAARLGDAWYPIGT
                     NPSFPLDSLARYRAGIAKLRGMVEKEGRDPGKVALAYRVQKYGPEVPATAGDGERRLF
                     SGTPAQIADDLKGLRDLGVAAVDLTFPGSTVEEVVASMRSFRDGVMARL"
     gene            634..1662
                     /locus_tag="VE686_03410"
     CDS             634..1662
                     /locus_tag="VE686_03410"
                     /inference="COORDINATES: protein motif:HMM:TIGR03559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0070967 - coenzyme F420 binding [Evidence
                     IEA];
                     GO_process: GO:0008150 - biological_process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LLM class F420-dependent oxidoreductase"
                     /protein_id="HYY83534.1"
                     /translation="MRLGLTLAMGAGIDTALVLEAERRGYSAVWCGESYGSDAVSPIA
                     WVLARTSRIKAGTGIMQMPARTPACAAMTAMTLQLLSDDRFLCGIGPSGPQVVEGWHG
                     QPYGTPLGRTREYISIIRAIVSREKPLEHHGEHYQIPYDGPDATGLGKPLKSILHGRP
                     LRFYCASITPGGMRLAGEIGDGNLPIFMSPETAEAVAKPTLEGMAKAGKPAELARFDI
                     APFVKIRVGADLQACRDACKPELALYIGGMGARGKNFYNDYCKRLGFADAAVAIQDAY
                     LAGRKQEAAVAVPDALVDQIALVGPPDRIRGRLQDWKAVAKEGKVGTLVLTGATQQAL
                     RIVAEAAL"
     gene            1956..2417
                     /locus_tag="VE686_03415"
     CDS             1956..2417
                     /locus_tag="VE686_03415"
                     /inference="COORDINATES: protein motif:HMM:NF016001.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitroreductase family deazaflavin-dependent
                     oxidoreductase"
                     /protein_id="HYY83535.1"
                     /translation="MAEARLAPNLPNWMLEHANRYLASGGTDGHMYTVTPPGYPEMTV
                     PSLLLTTTGRKSGEKFIFPLFYGKVDGSYVVVASKGGAPEHPGWYRNLVANPDVEIQV
                     GTAKIQARARTAVGDERTRLWEKALSFWPPYADYQRKTEREIPVVVLDPVQ"
BASE COUNT          408 a          887 c          897 g          389 t
ORIGIN      
        1 cgtgctctcc ggcgggcgcc tgacgctcgg tatcggtgcc ggttggctgc aggaggagtt
       61 cgaggcactg caggttccag acttcgccgc ccgcggccag gtgacggacg agtacatcct
      121 ggcggcgaag acgctctgga ccgcgacgct tcctcgcttc gggggcgagt tcgtgcgctt
      181 cgacgcgatc accttcgagc cgaagccggc gcagcagggc ggcccgccga tctgggtcgg
      241 cggcgagagc ggcccggcgc aacgccgcgc tgcccggctc ggcgatgcct ggtacccgat
      301 cggcacgaac ccctccttcc cgctcgacag cctcgcgcgc taccgcgccg gcatcgccaa
      361 gctgcgcggc atggtcgaga aggaggggcg cgacccgggg aaagtcgccc tcgcctatcg
      421 cgtacaaaaa tacggccccg aggtcccggc caccgccggc gacggggagc ggcgattgtt
      481 ctccggcaca ccggcgcaga tcgcggacga cctgaagggg ctgcgtgacc tcggcgtcgc
      541 ggccgtcgac ctcaccttcc ccggcagcac cgtcgaggaa gtggtcgcca gcatgcggag
      601 cttccgggac ggcgtgatgg cgaggctctg accatgcgtc tcggcctcac cctcgccatg
      661 ggcgcaggca tcgacacggc cctggtgctg gaggcggaac ggcgcggcta cagcgccgtc
      721 tggtgcggcg agagctatgg cagcgatgca gtcagcccga tcgcctgggt gctggcgcgg
      781 acctcccgta tcaaggccgg caccggcatc atgcagatgc cggcgcggac ccccgcctgc
      841 gccgccatga cggcgatgac gctgcagctt ctctcagacg accgctttct ctgcggcatc
      901 gggccctccg gcccgcaggt ggtggagggc tggcacggcc agccctacgg cacgccgctg
      961 ggccgcacgc gggagtacat ctccatcatc cgcgcgatcg tgtcgcggga gaagccgctg
     1021 gagcaccatg gggagcacta ccagatcccc tatgacgggc cggatgccac ggggctcggc
     1081 aagccgctca agagcatcct gcatggcagg cccttgaggt tctactgcgc ctccatcacc
     1141 cccggcggca tgcggctcgc cggcgagatc ggcgacggca acctgccgat cttcatgtcg
     1201 ccggagacgg ccgaggcggt ggcgaagccg acgctcgagg gcatggcgaa ggcgggcaag
     1261 ccggccgaac tcgcccggtt cgacatcgcg cccttcgtca agatccgcgt cggcgccgac
     1321 ctgcaggcct gccgggacgc ctgcaagccg gagctcgccc tctacatcgg cggcatgggc
     1381 gcgcggggaa agaatttcta caacgactac tgcaagcgcc tgggttttgc cgatgcggcg
     1441 gtggcgatcc aggacgccta tctcgcgggt cgcaagcagg aggccgcggt ggctgtgcca
     1501 gacgcgctgg tggaccagat cgccctggtc ggcccgcccg atcgcatccg cggccggctg
     1561 caggactgga aggcagtcgc gaaggagggg aaggtcggca cgctggtgct caccggcgcc
     1621 acgcagcagg cgctcaggat cgtcgccgag gcggcgctgt aacggccgcg cgcccgagat
     1681 ggtcgttgga tgtcggaccg ttggccggac tccgtcgtcc acaaagccga cggatgcgga
     1741 cggcaggttt gcagccctga catttggcgg attgcaaggc gcgtgttgcg ccggacgcgc
     1801 gcccgcgacg gcacgaccga cggcgacacg tgccgcgcat gtccgaagct ttcccactgg
     1861 accggcaacg gcccgtccac cgcaccgggg cggtggcctc gtggtcagct tcctgctcat
     1921 gctagcctcg tggtggttcc gagggagatc tcgcaatggc cgaggccagg ctcgccccca
     1981 acctgcccaa ttggatgttg gaacatgcca accgctatct cgccagcggc ggcaccgacg
     2041 ggcacatgta caccgtcaca cctccgggct acccggaaat gacggtcccc tccctgctgc
     2101 tgacgacgac gggccggaag tccggggaga agttcatctt cccgcttttc tacggtaagg
     2161 tcgatggcag ctacgtcgtc gtggcctcga agggcggcgc gcctgaacac cctggttggt
     2221 accgcaacct ggtcgccaat cctgacgtcg agatccaggt cggcactgcg aagattcagg
     2281 cgcgggccag gaccgccgtg ggtgacgagc gcacccgcct ttgggagaag gcgctcagct
     2341 tctggccacc ttatgcggac tatcagcgca agaccgagcg cgagatccct gtagtcgtgc
     2401 tcgacccggt ccaatagcgc ctgccggagc gcatgtccgc aaccggcccg accgtcggcg
     2461 gtgacccact tggttctgtt gcgacgctcg gcggccgcct tggcttggaa taggctgtgc
     2521 ccggggcggg cgcgtgcatc gcctgcagca gcagaacctt gaacatcagc acgtggtcga
     2581 a
//
LOCUS       DASQWN010000183         2612 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1221141, whole genome shotgun sequence.
ACCESSION   DASQWN010000183 DASQWN010000000
VERSION     DASQWN010000183.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2612)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2612)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2612
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1221141"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1354)
                     /locus_tag="VE686_03420"
     CDS             complement(<1..1354)
                     /locus_tag="VE686_03420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018409208.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HYY83536.1"
                     /translation="MVYRRAMAYFTPDWAWICVLVLLIAVSVAVGLLEAWPLAVLIDS
                     VLTSEPKGDWVHGLFLSVLPADKMGQVVGLVLIAMAAQIVGYLAWLGRMMINYHLNYR
                     GTTRVRYDLFSKLQELGLTYHRSRAQGDAIYRLTTDAFGPWGIMDVVIGTGVAAVTLT
                     VMTVILLSRSVPLTLAAFTVAPLMIWSNWRFGVRIHKRALESKQIDADLTAHIQQAMT
                     RIPLAQAFRRENREFRGFRVAVGRSVRALLRLNWQEQLYPLSRDSILAVGGAIILGYG
                     GYLVYRDQFVHPIAGGMTVGVLIIFMDYVRKLWDPLKWLTEFVAKVRIFEAATQRVFH
                     VIDMPEPIREAPDARRLPVRPRALHLEHVGFRYGAGSPVLVDVSAEIRPGEMVAFIGP
                     SGTGKSTLLALMLRFYDPTTGALRLDDVDFRSARLADLRGHMAFVGQDSLILPTTVRE
                     N"
     gene            1747..1823
                     /locus_tag="VE686_03425"
     tRNA            1747..1823
                     /locus_tag="VE686_03425"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1781..1783,aa:Arg,seq:tcg)
     gene            2025..>2612
                     /locus_tag="VE686_03430"
     CDS             2025..>2612
                     /locus_tag="VE686_03430"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY83537.1"
                     /translation="MIVLLWSLAERGHDHRRQVRLLMIAEGTARIERDQLRQAAGTLA
                     DLQAKTAAAMHDLAGATEARARLAPQLAEGERTVESQRGRISELARTGDDLLGSVRQL
                     KAKLAETTEEAAKEQAELAALRDAVASEKQTLADLKKGADEARGTEALVHRTIAERRS
                     EQEAVEHELEPLRAELAELKSRPRSPEGERSPAPLD"
BASE COUNT          514 a          835 c          855 g          408 t
ORIGIN      
        1 tgttctcgcg aactgtggtg ggcagaatga gactgtcctg gccgacgaag gccatatgac
       61 cccgcaagtc ggcgaggcga gcagaccgga aatcgacgtc gtcgaggcgg agtgcgccgg
      121 tcgtcggatc atagaaccgc aacatcagcg cgagtagcgt actcttgccg gtgccgctcg
      181 ggccgatgaa ggccaccatc tcgcccggcc gtatctccgc tgagacgtca accagcactg
      241 gcgacccggc gccgtacctg aacccgacat gctcaaggtg cagcgctcgc ggcctgacgg
      301 gaagccgccg cgcgtcgggt gcctctcgga tcggctcggg catatcgatc acgtgaaaga
      361 cccgctgcgt tgcggcctcg aagatgcgca ccttcgccac gaactcggtg agccacttga
      421 gcgggtccca gagcttccgg acgtagtcca tgaagatgat caggacaccg acggtcatcc
      481 ccccggcgat ggggtgaacg aattggtcgc ggtacacgag gtagccgccg tagccgagga
      541 tgatcgctcc cccgacggcc aatatggagt cgcgcgacag aggatagagt tgctcctgcc
      601 aattcagccg cagcaaggct cgcacgctcc gcccgacagc aacccggaag cctcggaact
      661 cgcggttttc ccggcggaac gcctgcgcga gcggaatccg tgtcatggcc tgttggatat
      721 gcgccgtcag gtcggcgtcg atctgcttcg actcgagcgc gcgcttgtga atgcggacgc
      781 cgaagcgcca gttgctccag atcatcaggg gcgcaaccgt gaaggctgcg agcgtcagcg
      841 gcacgctgcg ggacagcagt atgaccgtca tcaccgtcag cgtcacagct gcgacgcccg
      901 ttccgatcac gacgtccatg atgccccagg gaccgaacgc gtccgttgtc aggcggtaga
      961 tcgcatcgcc ttgagcgcga ctgcgatgat acgtcagacc tagctcctgc agcttcgaga
     1021 acaggtcata tcggacccgt gtggtacctc ggtagttcag atggtagttg atcatcatcc
     1081 gcccgagcca ggccagatac ccgacgatct gagcggccat cgcgatgagc acgagcccaa
     1141 ccacctggcc catcttgtcg gcggggagca ccgacagaaa aaggccgtgg acccagtcac
     1201 ctttcggctc gctggtaagc acgctgtcga tcaagacggc gagcggccac gcctcgagca
     1261 acccgaccgc gaccgacacg gcgatcaaga gcacaagaac gcagatccac gcccaatccg
     1321 gcgtgaagta ggccatggcg cggcgataga ccaatgcacc agtcctgatg gtccaggagt
     1381 aactcggacc tgagcggcgc gttcaggtgg ccctcagcac ggccgctaga cgcctcgtgc
     1441 ctggtctcgg gctcatgacc gcccacatgg gcggcttctc aacacgaagt tcggatgcaa
     1501 ggattggcag ggctgcggct cgaccctacc ccgacgtgat gagccgtgat cgcgaaggat
     1561 tccgtcccga accgccacgc ccgttccggg gcgtcggcga tccgcggtac ctgttggcgg
     1621 agatcgagga gttacgggcc gctgcggcgg cggccggcct ctcctcgctc gcgtaccagc
     1681 tacagtgcgc ggcggccgag gctcgctggc acgccgaagc gttggactgg gccgaggacg
     1741 ccgtggggcc gcgtagctca accggataga gcatcagcct tcgaagctga gggttacagg
     1801 ttcgaaccct gtcgcggccg ccagcctagt cgacatagcc agcagcgctc gccctgaaaa
     1861 ctggttcgcc ggacctaccg gcgcccccgc tcgtcggcga actgttctcg gcagcgcgcg
     1921 tttccggtgg gcacaagtcg gcgggagaac acgaaatgcc cagcaggtcc cgttctcttg
     1981 cgcttgcggg cgtgtccgtc atcgccggga taggatgggt cctcgtgatc gtactgctct
     2041 ggtccctggc agaacgaggc cacgaccacc ggcgccaagt tcggcttttg atgatagcgg
     2101 agggcacggc gcggatcgaa cgcgatcaac tgcggcaggc agcaggcaca ctcgccgacc
     2161 tacaagctaa gactgcggct gcgatgcatg atttagctgg cgcaaccgag gcccgcgcgc
     2221 gcttggcacc tcaactggcc gaaggagagc gcacggtcga gagccaaaga ggccggattt
     2281 ccgaactcgc gaggaccgga gacgatctgc ttggcagcgt gaggcaactc aaagcaaaac
     2341 tggctgagac tacggaggaa gctgctaagg aacaggcaga actcgcggca ctgcgcgatg
     2401 ccgtcgcgag cgaaaagcaa acgctcgccg atctgaagaa gggggccgac gaagcgcgtg
     2461 gcacggaggc gctcgtccat cgaaccatcg cggagcggcg ctcggagcag gaagctgtcg
     2521 agcacgagct tgaacctttg cgggccgagc ttgcggagct gaagagtagg cctcgttcgc
     2581 ccgagggcga gcgctccccc gcgccgctcg at
//
LOCUS       DASQWN010000184         5080 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_724601, whole genome shotgun sequence.
ACCESSION   DASQWN010000184 DASQWN010000000
VERSION     DASQWN010000184.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 5080)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5080)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5080
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_724601"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1444
                     /locus_tag="VE686_03435"
     CDS             <1..1444
                     /locus_tag="VE686_03435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009492276.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="carboxyl transferase domain-containing protein"
                     /protein_id="HYY83538.1"
                     /translation="PRERVMRLLDPGSPFLELGGLAAHGMYDDAIHGAGLITGIGRVM
                     GREVMVVCNDSTIKGGTYFPMTVKKHLRAQEVARENRLPCVYLVDSGGANLPQQTEVF
                     PDREHFGRIFFNQATLSSLGIPQIACVMGSCTAGGAYVPAMSDETVIVRRQGTIFLGG
                     PPLLKAATGEVVSAEDLGGADVHARLSGVADHYATDDVHALAIVRRIVGTLNTKKAVD
                     IDLAEPVEPALAVDDLEAIVPTDLKKQYDIREVIARLVDGSEFDEFKRLYGTTLVTGF
                     ARIWGMPVGILGNNGILYSESALKGAHFIELCCQRRVPLLFLQNITGFMVGREYEARG
                     IAKDGAKLVTAVACAKVPKLTLILGGSFGAGNYGMCGRAYSPRFLFTWPNAKISVMGA
                     EQASSVLGTVRRDNIEAEGKTWSTEEEEAFKAPIRDKIEAEGSPYFATARLWDDGIIL
                     PSETRRVLGLALSATLNAPVEETKFGVFRM"
     gene            complement(1481..3055)
                     /gene="rmuC"
                     /locus_tag="VE686_03440"
     CDS             complement(1481..3055)
                     /gene="rmuC"
                     /locus_tag="VE686_03440"
                     /inference="COORDINATES: protein motif:HMM:NF014680.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA recombination protein RmuC"
                     /protein_id="HYY83539.1"
                     /translation="MTEALLVLIGVAVAAAVVLGALCLIKLAELARRAALTSEAVSQL
                     LRVETDLIRKAGDDQCSALRQEFGTRLDQGIKAIDGRVEAIGQKLNDDMATMRDGVGK
                     NREGLRHTVEAKLDDATGKQGAAARELREELNASFRRVQLSVAETLTVLGEQQKERLA
                     ATTAALNTWGEKNERTQETLRKAVEDRLDAIRVENAQKLDEMRQTVDEKLQSTLETRL
                     GESFNRVVEQLTRVHEGIGEMKNLAANVGDLKNVLTNVKIRGTFGEVQLSLLLEEFLA
                     PGQYACNVAIKPNSSERVEFAIKYRVGGDGEELLLPVDAKFPRDDYEHLLEASEAGDA
                     PLMAHFRKQLEMRIKACAKDIRDKYIDPPTTTPFAILFLPTEGLYAEVLRQPGLFEFL
                     QHEYRVTLAGPTTFAAILNAFQMNFRSVAIAKRSNEVWKLLGAVRTEFSRYNEVVGRI
                     EKQLATAATSVESLGRRTRVMTRTLKTVEIMPDDGTAQKLLGLTPDALADEDETRPSF
                     ADLSGSEIVLPSVAAE"
     gene            3363..4325
                     /gene="argC"
                     /locus_tag="VE686_03445"
     CDS             3363..4325
                     /gene="argC"
                     /locus_tag="VE686_03445"
                     /EC_number="1.2.1.38"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019402973.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003942 -
                     N-acetyl-gamma-glutamyl-phosphate reductase activity
                     [Evidence IEA];
                     GO_process: GO:0006592 - ornithine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyl-gamma-glutamyl-phosphate reductase"
                     /protein_id="HYY83540.1"
                     /translation="MSSTTMTGVRAKQAATLGTVFIDGEAGTTGLGIRERLAAMPEIA
                     LRSIDPARRKDPAAKRDLLAEVDLVVLCLPDAAARETVAMVDALGPQGPRVLDASTAH
                     RVAAGWTYGFPELAPGQADAIAKARRVANPGCYPTGAVALLRPLVDAGLLPPDYPVSI
                     NAVSGYSGGGRSMIEAYEAATAPGFELYGLAFEHKHVPETQAYSRLTRRPIFVPSVGN
                     FRQGMLVSVPLHLDTLPGKPKPADLEAALAERYDGEALVRVVPTNGVAKLEPEALNDT
                     DALELRVFANEAHGHALLVARLDNLGKGASGAAVQNIRLMLGGA"
     gene            4405..>5080
                     /locus_tag="VE686_03450"
     CDS             4405..>5080
                     /locus_tag="VE686_03450"
                     /EC_number="2.3.1.39"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019401509.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004314 - [acyl-carrier-protein]
                     S-malonyltransferase activity [Evidence IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ACP S-malonyltransferase"
                     /protein_id="HYY83541.1"
                     /translation="MTRAFIFPGQGSQAVGMGKALAEAFPQARAVFDEVDAALSQKLS
                     TVMWEGPAEALTLTSNAQPALMAVSMAVMRVLEAEAGLELRRDAAFVAGHSLGEYSAL
                     AAAGSLKLDDTARLLRIRGDAMQNATPVGVGAMAALLGLEVEVAAEVARDAAQGEVCD
                     VANDNGSGQVVVSGNKSAVERAIALAQSRGAKRAILLPVSAPFHCALMQPAAEAMRAA
                     LGTVGIA"
BASE COUNT          730 a         1759 c         1791 g          800 t
ORIGIN      
        1 gccgcgcgag cgcgtcatgc gcctcctcga tcccggatcg ccgttcctcg agctcggcgg
       61 ccttgccgcc cacggcatgt acgacgacgc catccacggc gccgggctga tcaccggcat
      121 cggccgggtc atgggccgcg aagtcatggt cgtgtgcaac gactcgacca tcaagggcgg
      181 cacctacttc ccgatgacgg tgaagaagca cctgcgggcg caggaggtcg cgcgggaaaa
      241 ccggctgccg tgcgtctacc tcgtcgactc gggcggcgcg aacctgccgc agcagacgga
      301 ggtgtttccc gaccgcgagc acttcggccg catcttcttc aatcaagcca cgctgtcgtc
      361 gctcggcatc ccgcagatcg cctgcgtcat gggctcgtgc accgcgggcg gggcctacgt
      421 gccggcgatg tcggacgaga ccgtcatcgt gcgccgccag ggcaccatct tcctcggcgg
      481 cccgccgctc ctgaaggccg cgacaggcga ggtggtctcg gccgaggatc tcggtggcgc
      541 cgacgtgcac gcgcggcttt cgggtgtcgc cgaccattat gcgacggacg acgtgcacgc
      601 gctggccatc gtgaggcgca ttgtcggcac gctgaacacg aagaaggccg tcgatatcga
      661 tctcgccgag ccggtcgagc ccgcgctcgc cgtcgacgat ctcgaggcca tcgtgccgac
      721 ggacctcaag aagcagtacg acatccgcga ggtcatcgct cggctggtcg acgggtcgga
      781 gttcgacgag ttcaagcgcc tgtacgggac caccctggtc accggcttcg cccgcatctg
      841 ggggatgccg gtcggcatcc tcggcaacaa cggcatcctc tattccgaga gcgcgctgaa
      901 aggtgcgcat ttcatcgagc tgtgctgcca gcgccgcgtg ccgctcctgt tcctgcagaa
      961 catcaccggg ttcatggtcg ggcgcgaata cgaggcgcgc ggcatcgcca aggacggcgc
     1021 gaagctcgtc acggcggtcg cctgcgccaa ggtgccgaag ctgacgctga tcctcggcgg
     1081 ctccttcggc gccggcaact acggcatgtg cggccgcgcc tactcgccgc gcttcctctt
     1141 cacctggccc aacgccaaga tctcggtcat gggcgccgag caggcctcga gcgtgctcgg
     1201 cacggtgcgg cgcgacaaca tcgaggccga gggcaagacc tggagcacgg aagaggagga
     1261 ggccttcaag gcgccgatcc gcgacaagat cgaagccgag ggctcgccct acttcgcgac
     1321 cgcgcgcctg tgggacgacg gcatcatcct gccgagcgag acgcgccgcg tgctcggctt
     1381 ggcgctgagc gcgacgctga acgctccggt agaggagacg aagttcggcg tgttccggat
     1441 gtgagcttct aagctcttca ggacggcggc tgctgggccc tcactccgcc gccacgctcg
     1501 gcagaacgat ctccgagcct gagagatcgg cgaaggacgg ccgcgtctca tcctcgtcgg
     1561 cgagcgcgtc gggcgttagg ccgagcagct tctgcgccgt gccgtcgtcg ggcatgatct
     1621 ccaccgtctt gagcgtacgc gtcatcaccc gcgtgcggcg gccaaggctt tcgaccgagg
     1681 tggcggccgt cgcgagctgc ttctcgatcc tgccgaccac ctcgttgtag cgcgagaact
     1741 cggtgcgcac ggcgccgagc agcttccaga cctcgttcga gcgcttggcg atggcgaccg
     1801 agcggaagtt catctggaag gcgttgagga tcgccgcgaa ggtggtcggg cccgcgagcg
     1861 tgacgcggta ctcgtgctgc aggaactcga acagcccggg ctggcgcagc acctcggcgt
     1921 agagcccctc cgtcggcagg aacaggatgg cgaagggcgt cgtcgtcggc ggatcgatgt
     1981 acttgtcgcg gatgtccttg gcgcaggcct tgatgcgcat ctcgagctgc ttgcggaaat
     2041 gggccatgag aggcgcgtcg ccggcctccg aggcctcgag caggtgctcg tagtcgtcgc
     2101 gcgggaactt ggcgtcgacg ggcagcagca gctcctcgcc gtcgccgccg acccggtact
     2161 tgatggcgaa ttccacccgc tcggacgagt tcggcttgat ggcgacgttg caggcgtact
     2221 ggcccggcgc caggaactcc tcgagcagca gcgagagctg cacctcgccg aaggtgccgc
     2281 ggatcttgac gttggtgagc acgttcttga ggtcgccgac gttggcggcg aggttcttca
     2341 tctcgccgat gccctcgtgc acgcgggtca gctgttcgac gacgcggttg aacgactcgc
     2401 cgagcctcgt ctcgagggtc gactgcagct tttcgtcgac ggtctggcgc atctcgtcga
     2461 gcttctgcgc gttctcgacg cggatggcgt cgaggcgatc ctcgacggcc ttgcgcaggg
     2521 tctcctgcgt gcgctcgttc ttctcgcccc aggtgttcag tgccgccgtc gtcgcggcga
     2581 ggcgctcttt ctgctgttcg ccgaggaccg tcagcgtctc ggcgacgctg agctggacgc
     2641 ggcggaagct ggcgttcagc tcctcgcgca gctcgcgcgc ggccgcgccc tgcttgcccg
     2701 tggcgtcgtc gagcttcgcc tcgacggtat ggcgcaggcc ctcgcggttc ttgcccactc
     2761 cgtcgcgcat cgtcgccatg tcgtcgttga gcttctggcc gatcgcctcg accctgccgt
     2821 cgatcgcctt gatgccctga tcgagccggg tgccgaactc ctggcggaga gcgctgcact
     2881 ggtcgtcgcc cgccttcctg atgaggtccg tctcgacccg cagcagctgc gacaccgcct
     2941 cgctcgtcag cgccgcgcgc cgcgcgagct ccgcaagctt gatgaggcag agagcgccaa
     3001 gcacgacggc agctgcgacc gcaacgccga tcagaacaag cagagcctcg gtcacgaatc
     3061 acctccagag gtggcgaggc taggggaggg gtgaggagaa cgaaagggca ccggtcgcgc
     3121 cgtccccgtt gacttccgag ccgccgggga ccatacgaac ggccatgctt acgcggcctg
     3181 cccttcgacg ccgacgtacc ctcgccgcct ccgcgcgcgg gcgatgacgg gcatttgcgt
     3241 ctgagagcgc agccctgacc gcagccgcgc cccgagcgcg gctttttcgt aggcggcctc
     3301 cggcattgcg tcacagacgc gtcgggccat atctcactcc acgaatgcga cggggatcgg
     3361 acatgtcctc caccaccatg acgggcgtgc gggcgaagca ggcggcgacg ctcggcaccg
     3421 tgttcatcga cggcgaagcc gggaccacgg gactggggat ccgcgagcgg cttgccgcca
     3481 tgccggagat cgccctgcgc agcatcgacc cggcccggcg caaggacccg gcggcgaagc
     3541 gcgacctgct cgccgaggtc gaccttgtgg tgctctgcct gcccgacgcg gcggcgcggg
     3601 agaccgtcgc catggtggac gcgctcgggc cgcaaggccc gcgggtgctc gacgccagca
     3661 cggcgcaccg cgtcgccgcg ggctggacgt acggcttccc ggagctcgcg cccggacagg
     3721 ccgacgcgat cgcgaaggcg cggcgcgtcg ccaaccctgg ctgctatccg accggcgcgg
     3781 tggcgctcct gcggccgctg gtcgacgcgg ggcttctccc gcccgactac ccggtgagca
     3841 tcaacgccgt ctcgggctac tcgggcggcg gtcgctccat gatcgaggcc tacgaggccg
     3901 ccacggcgcc gggtttcgag ctctacggcc tggcgttcga gcacaagcac gtgcccgaga
     3961 cgcaggccta ctcccggctg acgcggcggc cgatcttcgt gccgtccgtc ggcaacttcc
     4021 ggcagggaat gctggtgagc gtgccgctgc acctcgacac cctgccgggc aagccgaagc
     4081 cggccgacct cgaagcggcg ctcgcggagc gctatgacgg cgaggcgctc gtgcgcgtgg
     4141 tgccgacgaa cggcgtcgcc aagctcgagc ccgaggccct caacgacacc gacgcgcttg
     4201 agcttcgggt gttcgccaac gaggcgcacg gccacgcgct cctcgtcgcg cgcctcgaca
     4261 acctcggcaa gggcgcgtcg ggagcggctg tccagaacat ccggctcatg ctcggcggcg
     4321 cctgagggcg gcgctcgccg gcttcttgac acctgcggga cgcggtgcga gtgccgcccg
     4381 cgggtggctt gagggtcggg cggcatgacg cgggcgttca tctttccggg gcagggcagc
     4441 caggccgtcg gcatgggcaa ggcgctggcg gaggcctttc cgcaggcccg cgccgtgttc
     4501 gacgaggtcg acgccgcgct ctcgcagaag ctctcgaccg tgatgtggga gggtccggcg
     4561 gaggcgctga ccctgacctc gaacgcgcag cctgcgctaa tggccgtcag catggcggtg
     4621 atgcgggtgc tcgaggccga agccgggctc gaattgcgcc gggacgcggc gttcgtggcg
     4681 ggccactcgc tgggcgagta ctcggcgctt gcggcggcgg gcagcctcaa gctcgacgac
     4741 acggcgcggc tcctgcgcat ccgtggcgac gccatgcaga acgccacgcc ggtcggcgtc
     4801 ggcgccatgg cggcgctcct cggccttgag gtcgaagtcg ccgcggaggt cgcgcgcgac
     4861 gcggcgcagg gcgaggtctg cgacgtcgcc aacgacaacg gctccggcca ggtcgtcgtc
     4921 tccggcaaca agtccgccgt cgagcgcgcc atcgcgctgg cgcagagccg gggcgccaag
     4981 cgggcgatcc tgctgccggt gtcggcgccc ttccattgtg ccctcatgca gcccgccgcg
     5041 gaggcgatgc gcgcggccct tgggaccgtg gggatcgcgg
//
LOCUS       DASQWN010000185         3173 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1320499, whole genome shotgun sequence.
ACCESSION   DASQWN010000185 DASQWN010000000
VERSION     DASQWN010000185.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 3173)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3173)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3173
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1320499"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1177)
                     /locus_tag="VE686_03455"
     CDS             complement(<1..1177)
                     /locus_tag="VE686_03455"
                     /EC_number="2.5.1.54"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012453857.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003849 - 3-deoxy-7-phosphoheptulonate
                     synthase activity [Evidence IEA];
                     GO_process: GO:0009073 - aromatic amino acid family
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-7-phosphoheptulonate synthase class II"
                     /protein_id="HYY83542.1"
                     /translation="MTERWTPNSWRSKPIQQVPAFPDPEALEGVEQQLAGFPPLVFAG
                     EARKLKRTLAKVAKGEAFLLQGGDCAESFAEHSADNIRDFFRLFLQMAVVLTFAGGSP
                     VVKVGRVAGQFAKPRSSDKETLDGVELPSYRGDIINDIDFTPESRIPDPRRQIEAYRQ
                     SAATLNLIRAFANGGYANLENAHRWMLGFVKDSPQSSRYSELAERITESLEFMRAIGI
                     DPEVHPEMRTTDFYTSHEALLLGYEQAMTRIDSTTGDWYATSGHMLWIGDRTRQPDHA
                     HVEYMRGIRNPIGLKCGPSMTADGLLKLIDALNLEDEAGRLTLICRFGADKVGDHLPG
                     LIRAVQREGRTVVWSCDPMHGNTIKAASGYKTRPFERVMGEVRDFFAIHQAEGTHAGG
                     "
     gene            complement(1703..3100)
                     /gene="gor"
                     /locus_tag="VE686_03460"
     CDS             complement(1703..3100)
                     /gene="gor"
                     /locus_tag="VE686_03460"
                     /EC_number="1.8.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012334497.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004362 - glutathione-disulfide reductase
                     (NADP) activity [Evidence IEA];
                     GO_process: GO:0045454 - cell redox homeostasis [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione-disulfide reductase"
                     /protein_id="HYY83543.1"
                     /translation="MADETSGFDVDLFVIGGGSGGVRAARIAAGYGAKVMLAEEYRVG
                     GTCVIRGCVPKKLMVYASRFAHDFEEAAGFGWSLGEPSFDWATLIRNKDREIDRLEGI
                     YRTNLEKAGVEILDSRAVIEDEHTVHVLKTGARIRARTILVAVGAHPTLEPVIPGGEL
                     GITSNEVFHLETQPKRIMIVGGGYIAVEFAGIFAGLGSEVTLLHRGDKLLRGFDEDLR
                     DALGEAYTQRGIDLALGKTVLRLDRTAEGIAATLSDGSVRTVDQVLVATGRRPNTKGL
                     GLEKVGIAVDEVGAIPVDAYSQTLIPSIYAVGDVTNRANLTPIAIREGHAFADTVFGR
                     KPTIIDHDLIPTAVFSTPEIGVIGCGEAAARSIYGDIDVYRTAFRPMRATLSGASDRV
                     LMKLIVDKATDKVVGVHIMGHDAGEMIQLAGVAVTMGATKADFDRTVAVHPTAAEELV
                     TMRSPVAVKHPVAVG"
BASE COUNT          531 a         1049 c         1035 g          558 t
ORIGIN      
        1 tgccgcccgc gtgcgtccct tccgcctgat ggatggcgaa gaagtcccgc acctccccca
       61 tgacccgctc gaagggtcgg gtcttgtagc cggaagccgc cttgatggtg ttgccgtgca
      121 tgggatcgca ggaccacacc accgtgcgcc cctcccgctg caccgcccgg atgaggcccg
      181 gcaggtgatc gcccaccttg tcggcgccga agcggcagat gagggtcagt cggcccgcct
      241 cgtcctcgag gttgagggcg tcgatgagct tcagcaatcc gtccgccgtc atcgacgggc
      301 cgcacttgag gccgatcggg ttcctgatgc cgcgcatgta ttccacatgg gcatgatcgg
      361 gctggcgggt gcggtcgccg atccagagca tgtggccgga ggtggcgtac cagtcgccgg
      421 tggtggaatc gatccgggtc atggcctgct cgtagccgag cagcagggcc tcgtggctgg
      481 tgtagaaatc cgtcgtgcgc atctcgggat gcacctcggg atcgatgccg atggcccgca
      541 tgaactccag gctctcggtg atgcgctcgg ccagctcgct gtagcgggag gattgcggcg
      601 aatccttcac gaagccgagc atccagcgat gggcgttctc gaggttcgcg taaccgccat
      661 tggcgaaggc gcggatcagg ttcagggtcg cggccgactg gcgataggcc tcgatctggc
      721 ggcgcgggtc gggaatccgg gattccggcg tgaagtcgat gtcgttgatg atgtcgccgc
      781 ggtagctcgg cagttccacc ccgtcgagcg tctccttgtc ggaggatcgg ggcttggcga
      841 actggcccgc gacccggccg accttcacca cgggcgagcc gcccgcgaag gtgagcacca
      901 cggccatctg gaggaacagg cggaagaaat cgcggatgtt gtcggcggaa tgctcggcga
      961 agctttcggc gcaatcgccg ccctggagca ggaaagcctc gcctttggct accttggcga
     1021 gcgtgcgctt cagcttgcgc gcctcgcctg caaaaacgag cggcggaaag ccggcgagct
     1081 gctgctccac gccttcgagc gcctccgggt ccggaaaagc cggcacctgc tggatcggct
     1141 tgctcctcca gctattgggc gtccaccgtt cagtcatgac actatccccc gtgtctctcg
     1201 aacatccttg tcgttcaccg caacaagcgg cacgaagcgg cacctataca cgacattatc
     1261 gaaaaggcta gtgcggagag gagccgcgtc agaggaggcc ggcccgcggc atcttggaat
     1321 gggagggatg ttcctcagcg cgcgtggcgc tgacggctct cgcgccggga catccaaagg
     1381 gcgccgaacc ccatcgcgac tgcaatgacc ggaatgccaa agtaaacata ggcttccaga
     1441 agagtcatgg tttcaggtcc ctcaagatca acctcgctat ggaatgtagg atgaacccga
     1501 cgaaaagcca aatgatgctc acaagaatgg caattccgtc ccttgcgata gcggccgatc
     1561 cgtagccgac ggccaccatg ggcccgacga atccggcaat gacgaacgcc acggccacgt
     1621 tgttgagcgc cgtcgcggtc aacttcgtct gttcattatg cacaaggctc aatcatcgct
     1681 cccttggcgc cgctccgacg cctcatccca ccgccaccgg gtgcttgacc gctaccgggg
     1741 agcgcatggt caccagctcc tccgccgccg tcggatgaac cgcgaccgtg cggtcgaaat
     1801 cggccttggt ggctcccatg gtgacggcga ccccagcgag ctggatcatc tcgcccgcgt
     1861 cgtgccccat gatgtgaacg cccacgacct tgtccgtggc cttgtcgacg atgagtttca
     1921 tcaggacccg gtcggatgct cccgagaggg tcgcccgcat gggtcggaag gcggtccggt
     1981 acacgtcgat gtcgccgtag atcgaccggg ccgcagcctc gccgcagccg atcaccccga
     2041 tctccggcgt ggagaagacg gcggtgggga tcaggtcgtg gtcgatgatg gtcggcttgc
     2101 ggccgaacac cgtatcggcg aaggcgtggc cctcgcggat ggcgatgggc gtgaggttgg
     2161 cccggttggt cacatcgccc accgcgtaga tggacggaat aagggtctgg gaataggcgt
     2221 ccaccgggat cgcgccaact tcgtcgacgg cgatgcccac cttctccagc ccgagaccct
     2281 tggtgttcgg ccgccgtccg gtggcgacga gcacctgatc cacggtccgg accgagccgt
     2341 ccgacagggt cgcggcgatg ccttcggcgg ttctgtcgag gcgcagcacg gtctttccga
     2401 gggcgaggtc gattccgcgt tgggtatagg cctcgcccag cgcgtcgcgc aggtcctcgt
     2461 cgaagccgcg caggagcttg tcgccccggt gcaggagcgt cacctcgctt ccgagaccgg
     2521 cgaagatccc ggcgaattcc acggcaatgt agccgccgcc gacgatcatg atgcgcttgg
     2581 gctgggtttc gaggtggaag acctcgttcg aggtgatgcc gagttcgccc cccgggatga
     2641 cgggctcgag cgtcggatgc gcgccgaccg ccaccaggat ggtgcgggcg cgaatccggg
     2701 cgccggtctt gagcacgtgc accgtatgct cgtcctcgat gacggcccgg ctgtcgagga
     2761 tctccacgcc tgccttttcg aggttcgtgc ggtaaatccc ctccagccgg tcgatctccc
     2821 tgtccttgtt gcggatcagg gtcgcccaat cgaagctcgg ctcaccgagg ctccagccga
     2881 aacccgccgc ctcctcgaaa tcgtgggcga agcggctcgc atagaccatc agcttcttgg
     2941 gcacgcagcc gcggatcacg caggtgccgc cgacccggta ctcttccgcc agcatcacct
     3001 tggcgccgta accggccgcg atccgggccg cgcgcacgcc gcccgatccg cctccgatca
     3061 cgaacagatc gacgtcgaag cccgaggtct cgtccgccat cgcgccgcac tccttcgttg
     3121 ttgaccgacc cgcgtcgatt acggacccgg actatgccgc atcgcccgca gcc
//
LOCUS       DASQWN010000186         3171 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_907831, whole genome shotgun sequence.
ACCESSION   DASQWN010000186 DASQWN010000000
VERSION     DASQWN010000186.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 3171)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3171)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3171
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_907831"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..597
                     /locus_tag="VE686_03465"
     CDS             <1..597
                     /locus_tag="VE686_03465"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY83544.1"
                     /translation="TFSPAATTGCAAIADALSGVAEPSMPSGCKTPAQIASSTWSPGL
                     YCGSITPPANVTMSAGTYYFYGATLNIATGQNSTGTGVTWFFDASSTLNHTSGGTLNI
                     SAPTTGSLAGIAMFQSRSANQSNQMKLAGNADFTIDGTIYFPRAALVLTGSASVSVPK
                     TGYVITWTMSYTGSSDFYVGTTGGTQALGSFGPPKLAN"
     gene            866..1267
                     /locus_tag="VE686_03470"
     CDS             866..1267
                     /locus_tag="VE686_03470"
                     /inference="COORDINATES: protein motif:HMM:NF018894.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0035438 - cyclic-di-GMP binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PilZ domain-containing protein"
                     /protein_id="HYY83545.1"
                     /translation="MTFGKKKPDHRAGSDRRAAARMPTGLQAKAIFADTSKDCSVVDF
                     TNKGARLQLQGFTALPDKFELYVPDRQASLRATVQWRVADEVGVLFDGPRAGASQDLG
                     LHSAVEKLEARIARLEAIVASLSAPRVTSAD"
     gene            complement(1509..1673)
                     /locus_tag="VE686_03475"
     CDS             complement(1509..1673)
                     /locus_tag="VE686_03475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004128206.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Flp family type IVb pilin"
                     /protein_id="HYY83546.1"
                     /translation="MSFIGDEAGATAIEYGLIAALVSVAIVTSTVFLSGGISNTFNYV
                     GTQVTAAISN"
     gene            1816..2514
                     /locus_tag="VE686_03480"
     CDS             1816..2514
                     /locus_tag="VE686_03480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015930923.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA pseudouridine synthase"
                     /protein_id="HYY83547.1"
                     /translation="MTGDEILARVLYRDALMLVIDKPAGLPVHPGPKGGETLVRHLDA
                     LRFGLPRRPEAAHRLDKDTSGCLVLGRHAKALARLGELFARNEVDKVYWAVVEGGPAG
                     DEGEIDVALARKSPDPRSWWMKPDPSGQPALTRWRVLGRADRATLMELRPITGRTHQL
                     RVHCAASGWPILGDPIYGTAPRFGGPGLHLHARTVTVPLYRKKPPIVVEAPLPAAMRD
                     GVAACRADMPREPG"
     gene            2678..>3171
                     /locus_tag="VE686_03485"
     CDS             2678..>3171
                     /locus_tag="VE686_03485"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY83548.1"
                     /translation="MASGPATAQNQSILDAYALRGGSADTVVALDDVVWSFSGRYWHS
                     MGKTTWNHDASSAGPQYGNPTSRLDYERLKASTGEVEIRADEATGIFGRALFGIGAIT
                     GGALRDRDWFAGQIKFSDTMSTVKGGTLAYATVDGGWTLSSPGAGPLTTRVFAGYGFW
                     GETAP"
BASE COUNT          552 a         1062 c         1054 g          503 t
ORIGIN      
        1 accttcagcc cggcggccac gaccgggtgt gcggccattg ccgatgcgct gagcggcgtg
       61 gcggagccca gcatgccgtc cggatgcaag acgcctgcgc agatcgcaag ctcgacctgg
      121 agccctgggc tgtactgcgg aagcatcacg ccgcccgcta acgtcacgat gtcggcgggc
      181 acctattatt tttacggggc taccctcaac atcgccaccg gccagaacag cacgggcact
      241 ggcgtcacct ggtttttcga cgcgagctcg accttaaacc acaccagcgg cggaacgctg
      301 aacatcagcg cacccaccac cggctcgctc gctggcatcg ccatgttcca gtcgcgatca
      361 gccaaccaga gcaatcagat gaagcttgcg ggcaacgcag actttacgat cgatgggacg
      421 atctacttcc cgcgcgctgc gctcgtgctt accgggtcag cgtccgtctc ggtcccgaag
      481 accggatacg tcatcacatg gacgatgtct tacaccggta gcagtgactt ctacgtcgga
      541 acgacgggcg ggacgcaggc ccttggctcc ttcggcccac cgaagctcgc gaactagtga
      601 gacggggtgc tgccggctgg atttcagagg gtacctggcg ccccagcgcc cggctaaacc
      661 gcagctgaaa gctcgtggtc gatgggccga accatctctc aaatgccgat ctgcgcgaac
      721 tgcgacatcc gaccggcgcg ccgaggggag accggccgcc gggagcaaac gcttcccgat
      781 cctcgcctgc aggcttcgac ggcgtgcaac cgccacttaa cacatgaatg ataccgctac
      841 gcgggagcta gcatcggatt ctcgcatgac gttcggaaag aagaagccgg accatcgggc
      901 aggcagcgac cggcgcgccg ccgctcgaat gcccacgggt ctgcaggcga aagccatctt
      961 cgccgacacc agcaaagact gttcagtcgt cgatttcacg aacaagggtg cgcgcctcca
     1021 gctgcagggc ttcacggccc tccctgacaa gttcgagctg tatgtgcctg accgtcaggc
     1081 gtcattgcgc gcaaccgtcc aatggcgcgt tgccgatgaa gtcggggttc tgttcgacgg
     1141 ccctcgcgcc ggagcctcgc aggatttggg gctgcactcg gcggtggaga aacttgaggc
     1201 gaggatcgcg cgcctcgagg caatcgtcgc cagcttgtcg gcccctcgag tgactagcgc
     1261 cgattgagtc cctgccctgt tttccccaaa ccggctcgtg tggcgacgct cgtgtcgatg
     1321 tcggcgcagc agcgccggcg ggtctgttga aagagcggtg ccggaccgga gtttagacca
     1381 catcccaagc gagccgcgtc gtcggtcaag aagcgggagc cctcgccgag cgacgcttca
     1441 acgggttcgc caccgcaggc ggcggttgcc cgctgcactc acgcgctgcc gggaaggacc
     1501 acgaggcgct agttcgagat cgcagccgtg acctgcgtac ccacgtagtt gaacgtgttc
     1561 gagatcccgc cgctcaggaa caccgtcgat gtgacgatag ccaccgagac aagggcagcg
     1621 atcaagccat actcgatggc tgttgctcct gcctcgtcgc cgataaagga catgaagagt
     1681 cgcattgatc gtctggcact tcgttgtggc ggccggcgtt tgggcgccag cgtccataga
     1741 cgcggtcgcg acagggaggt tagccctcgc tcgttaaaga agagtgcacc tgcattctac
     1801 gaggctcgca acgtcatgac cggagacgag atcctggcgc gggtgctgta ccgcgacgcg
     1861 ctgatgctgg tgatcgacaa gccggccggg ttgccggtgc atccggggcc gaagggcggc
     1921 gagacgctcg tgcggcacct cgatgccctg cgcttcggcc tgccgcgccg gccggaggcg
     1981 gcccaccggc tcgacaagga cacctcaggc tgcctcgtgc tgggccgcca cgccaaggcg
     2041 ctcgcacggc tcggcgagct gttcgcccgc aatgaggtcg acaaggtcta ctgggcggtg
     2101 gtcgaaggcg gaccggcggg cgacgagggc gagatcgacg tggcgctggc gcgcaagtcg
     2161 cccgacccgc gcagctggtg gatgaagccc gacccgagcg gtcagcccgc gctcacgcgc
     2221 tggcgcgtgc tggggcgcgc ggaccgcgcc acgctgatgg agttgcgccc gatcacagga
     2281 cgcacgcacc agcttcgcgt tcattgcgcg gcctcggggt ggccgatcct cggcgatccc
     2341 atctacggca ccgccccgcg cttcggcggc ccagggctgc acctgcatgc gcgcaccgtc
     2401 acggtgccgc tctatcgcaa gaagccgccc atcgtcgtgg aagcgcccct ccccgccgcc
     2461 atgcgcgacg gggtcgccgc atgcagggcc gacatgccgc gcgagcccgg ctagtcggac
     2521 gaggcggcgg gggacacacg cgcagcatct cggcgcgaga acctcgcgca aaaatagtaa
     2581 ccttaaccct gggttaagcg ccctgcgcga cagtgcggcg actcggggat ttccgatgcg
     2641 ccttcgattg tttgagctct ttctcgggat cggtttggtg gcgagcggcc cggccacggc
     2701 ccagaaccaa agcatcctcg acgcctacgc cctgaggggc ggcagcgcgg ataccgtcgt
     2761 cgcgctcgac gacgtcgtgt ggagcttctc ggggcggtac tggcactcca tgggcaagac
     2821 gacctggaac cacgatgcgt ccagtgcggg cccgcagtac ggcaacccga cctcgcgcct
     2881 cgactacgaa cgtctgaagg caagcaccgg cgaggtcgag atcagggccg acgaggcgac
     2941 cgggatcttc gggcgggcgc tcttcgggat cggggcgatc acgggcggcg ccctgcgcga
     3001 ccgcgactgg tttgccgggc agatcaagtt ctccgacacc atgagcaccg tgaagggcgg
     3061 gacgctcgcg tacgccacgg tcgacggcgg ctggaccctg tcctcgcccg gcgccggtcc
     3121 gctgaccacg cgggtgttcg cgggctacgg cttctggggc gagaccgccc c
//
LOCUS       DASQWN010000187         3683 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_907839, whole genome shotgun sequence.
ACCESSION   DASQWN010000187 DASQWN010000000
VERSION     DASQWN010000187.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 3683)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3683)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3683
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_907839"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..275
                     /locus_tag="VE686_03490"
     CDS             <1..275
                     /locus_tag="VE686_03490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009763777.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="flagellar export protein FliJ"
                     /protein_id="HYY83549.1"
                     /translation="VEEKKTGISDPNHFAYPTYARAAAQRRDNLRRSAQELNGQLDDA
                     KATLGEAFEELKKVEMLEDRDRSAERAMEAAAISDAGQGRVARASY"
     gene            complement(469..1080)
                     /locus_tag="VE686_03495"
     CDS             complement(469..1080)
                     /locus_tag="VE686_03495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015930184.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HYY83550.1"
                     /translation="MGQADDALSVSLRGVTDLPPGKIAEVVTYLEMLAAPERREGLAG
                     GFTLERFSDVTRYRALFRRVGERWLWMSRLVVPEAALRTILDDPAVEAFALRSGGEDI
                     GILELDFRQPEECELAYFGVVPEAIGSGAGRFLMSEAVRRAWARPIRRFWVHTCTHDH
                     PRALAFYQRSGFRAYKRAIEIADDPRLTGHLPRDAAPDVPVIG"
     gene            1258..1602
                     /locus_tag="VE686_03500"
     CDS             1258..1602
                     /locus_tag="VE686_03500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018319061.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HYY83551.1"
                     /translation="MKVLLVEDEALVRMMAAETLEDAGFEVIEAATGEEALEACKIHR
                     ADVLFTDIRLPGELSGWDVAEHCRAQHPDLPVIYATGYSEAAPRRVSGSAFFRKPYRP
                     AEIVKTILTLTR"
     gene            1713..2591
                     /locus_tag="VE686_03505"
     CDS             1713..2591
                     /locus_tag="VE686_03505"
                     /inference="COORDINATES: protein motif:HMM:NF024109.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta fold hydrolase"
                     /protein_id="HYY83552.1"
                     /translation="MAQAHTPPGTRGRARDGIVARSIPREGGAPALEVLEAVPDGEAR
                     GAPLLLVHGAFGGAWMWREIFMPVFAATGRHVVAFSIRGHGASEGWDRLRETSLAEYV
                     EDVRRALRVLPEPPVVIAHSLGGLLSQMLIGREEMRGLVLCASLPPEGMIFTTPRLAM
                     TDPTLFTEAFLGSVTKTHGPIAMAGFQVLFSDGLPPHEIARHARRMQPESPRALLDAH
                     ASPPVLSAAAFRIPTFVVGGERDRLVWRASTVRTALYHGGEHRTAHGMGHFLQLDVGA
                     AELAGDILAGLDAQGV"
     gene            2672..>3683
                     /locus_tag="VE686_03510"
     CDS             2672..>3683
                     /locus_tag="VE686_03510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014889773.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysylphosphatidylglycerol synthase
                     domain-containing protein"
                     /protein_id="HYY83553.1"
                     /translation="MKGKLEYVWPAVGLAAVVFSCWLLWRELHAVSMADIKASLAAIR
                     PHEYMLAGFSTLVAYAALAWYDRIALLHLGVRHISWTFISLCSFTTYALSHNIGASVF
                     SGAMVRYRAYSTQGLSAGQVAVLVAICSFTFGLGTILLGGVVLTFEPNQLARLSGLLP
                     AFLTNPTTARLIGLALLAFVALYVVGSVLHFRPLAIGTFKIEYPRPPVTFRQLIAAPA
                     ELLGAAGIIYFALPEAGNPGYFVVLAVFLASFSAALASHAPGGLGVFEIIFLTAMPDI
                     PKAQVLAALLVFRLFYLLLPLLFALVVVVMFERARLAKLWRELHAVSMADIKASLAAI
                     RPH"
BASE COUNT          520 a         1344 c         1255 g          564 t
ORIGIN      
        1 ccgtcgagga gaagaagacc ggcatctccg acccgaacca tttcgcctat ccgacctacg
       61 cgcgcgcagc cgcgcagcgc cgcgacaacc tgcgccgctc ggcgcaggag ctgaacggcc
      121 agctggacga cgccaaggcc accctcggcg aggccttcga ggagctgaag aaggtcgaga
      181 tgctcgagga ccgcgaccgc tcggccgagc gcgccatgga ggccgccgcg atcagcgatg
      241 cggggcaggg tcgcgtcgcc cgcgcaagct actgatcttc cacgaccgcc tgctctgagc
      301 gcccgcctcg cggcgagcgg tcgaggggac gccgtcatct tccgggccgc ccctcgaggg
      361 cgaccatgcc ggcaaccgcc cgagggaggg gccggaagat gccggcaaaa atccggaaga
      421 atccgggaag atgccgacaa agcggaagat gacgacgagc gttgcggctt agccgatcac
      481 cggcacgtcc ggcgccgcgt cgcgcggcag gtggccggtg agccgcggat catcggcaat
      541 ctcgatggcc cgcttgtagg cccgaaagcc cgagcgctgg tagaaggcga gcgcgcgcgg
      601 gtggtcgtgc gtgcaggtgt gaacccagaa acgccggatc ggtcgcgccc aggcccgcct
      661 caccgcctcg ctcatcagga accgtcccgc tcccgacccg atcgcctccg gcacgacgcc
      721 gaaatatgcg agctcgcact cctcgggctg ccgaaagtcg agctccagga tcccgatgtc
      781 ctccccaccc gagcgtagcg cgaaggcctc gacggccgga tcatcgagga tggtgcgaag
      841 cgccgcctcg ggcacgacga ggcggctcat ccacagccac cgctcgccga cgcgccggaa
      901 cagggcgcgg tagcgcgtaa cgtccgagaa gcgctccagc gtgaagccgc ccgcgagccc
      961 ctcgcgccgc tccggcgcgg ccagcatctc gagataggtc acgacctcgg cgatcttgcc
     1021 gggcggcaga tcggtgacgc cccgaagcga caccgaaagc gcgtcgtccg cctgtcccat
     1081 ggctcgtggc cttccctcga cgagccctct atagggcccg tccacgacgc cgcaaccctg
     1141 cccgagggtg gccgggatcg cgcgccaggg ctgcagcggg ctcaaggccg tgcaggattg
     1201 cccgcccggg cgcgccgctt taaaggcggc ggcgggcagt tcgagcagag ggccgcgatg
     1261 aaagtgcttc tcgtcgagga tgaagccctc gtccgcatga tggcggccga gacgctggag
     1321 gacgccggct tcgaggtcat cgaagcagca accggcgagg aggccctcga ggcctgcaag
     1381 attcaccgtg ccgacgtgct gttcaccgac atccggctgc cgggcgagct cagcggctgg
     1441 gatgtggcgg agcattgtcg cgcgcagcac cccgacctgc cggtgatcta cgccaccgga
     1501 tactccgagg ccgcgccgcg ccgcgtgtcg gggagcgcct tcttccgcaa gccgtatcga
     1561 ccggccgaga tcgtcaagac cattctgacg ctgacgcgct gacccgcgcc ggcaacgacc
     1621 gcacggcggc gaggaacttg cgcccgaacg gaaccgcgcg cctcgcgttg gtgcgcgtgg
     1681 ccgcgaccgg ggcggcaccc ggaggagcaa tgatggcgca ggcgcataca ccgccaggga
     1741 cgcgaggccg cgcccgtgac ggcatcgtgg cccgctccat cccgcgtgag ggcggcgccc
     1801 cggcgctcga ggtcctcgag gcggtgccgg acggggaggc ccgcggggcg ccgctgcttc
     1861 tcgtgcatgg cgccttcggc ggcgcctgga tgtggcgcga aatcttcatg cccgtgttcg
     1921 cggcgacggg gcggcacgtg gtcgcgttca gcatccgcgg ccatggcgcg agcgaaggct
     1981 gggaccgcct gcgcgagacc tcgctggcgg agtacgtcga ggacgtccgg cgcgcattgc
     2041 gcgtgctgcc cgaacccccg gtcgtcatcg cccattcgct cggcggtctg ctgtcccaga
     2101 tgctgatcgg gcgcgaagag atgcgcggcc tggtgctttg tgcctcgctg ccgccggagg
     2161 gcatgatctt caccacgccc cggctcgcca tgacggatcc gacgctgttc acggaggcgt
     2221 tcctcggctc ggttaccaag acccatgggc cgatcgccat ggcggggttc caggtcctgt
     2281 tctccgacgg cctgccgcca cacgaaatcg cccgccacgc ccggcgcatg cagcccgaga
     2341 gtccgcgcgc cctcctcgac gcgcacgcgt cgccaccggt cctctcggcc gcggccttcc
     2401 gcattccgac cttcgtcgtc gggggcgagc gcgaccggct cgtctggcgc gcctcgacgg
     2461 tccgcacggc cctctaccac ggcggcgagc accgcacggc ccacggcatg ggacacttcc
     2521 tgcaactcga cgtcggcgcg gcggagctcg cgggcgacat cctcgccggg ctcgacgcgc
     2581 agggcgtctg agggacccca aggcgcccgc ttgcggccgt gcccgggctc gggcaagaga
     2641 ggcgacgtgg ggagaggccg taagccgtcg catgaagggt aagctcgagt acgtgtggcc
     2701 cgcggtcggg ctcgccgcgg tcgtgttctc gtgctggctc ctctggcgcg agctgcacgc
     2761 cgtgtcgatg gccgacatca aggcgagcct cgcggcgatc cgtccgcacg agtacatgct
     2821 cgctggcttc tcgaccctcg tcgcctatgc ggcgctggcc tggtacgacc gcatcgccct
     2881 gttgcacctc ggcgtgcgcc acatatcgtg gacgttcatt tcgctgtgct ccttcaccac
     2941 ctacgccctg tcgcacaaca tcggggcgtc ggtgttctcg ggcgccatgg tgcgctatcg
     3001 cgcgtactcc acgcaggggc tctcggccgg ccaggtcgcg gtcctcgtgg cgatctgctc
     3061 cttcaccttc gggctcggca cgatcctgct cggcggcgtg gtgctgacct tcgagccgaa
     3121 ccagctcgcg cgcctctcgg gcctcctgcc ggcgtttctc accaacccga cgacggcgcg
     3181 gctcatcggc ctcgccctgc ttgccttcgt ggcgctctac gtggtcggct cggtcctgca
     3241 tttccggccc ttggcgatcg gcacgttcaa gatcgagtac ccacgcccgc ccgtgacctt
     3301 ccgccagctc atcgcggcgc cggcggagct cctcggggcc gccggcatca tctacttcgc
     3361 cctgccggaa gccgggaacc ccggctactt cgtcgtgctg gcggtcttcc tcgcctcgtt
     3421 ctcggcggcc ctggcctcgc acgcgccggg tgggctcggc gtgttcgaga tcatcttcct
     3481 cacggcgatg cccgacatcc cgaaggccca ggtccttgcg gcgctcttgg tgttccgcct
     3541 gttctacctg ctgcttcccc tccttttcgc gctggtcgtc gtcgtgatgt tcgagcgcgc
     3601 tcgcctggcc aagctctggc gcgagctgca cgccgtgtcg atggccgaca tcaaggcgag
     3661 cctcgcggcg atccgtccgc acg
//
LOCUS       DASQWN010000188         2964 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1022996, whole genome shotgun sequence.
ACCESSION   DASQWN010000188 DASQWN010000000
VERSION     DASQWN010000188.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2964)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2964)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2964
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1022996"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..660
                     /locus_tag="VE686_03515"
     CDS             <1..660
                     /locus_tag="VE686_03515"
                     /inference="COORDINATES: protein motif:HMM:NF013884.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016747 - acyltransferase activity,
                     transferring groups other than amino-acyl groups [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyltransferase family protein"
                     /protein_id="HYY83554.1"
                     /translation="RIWPLLLTGWTLNYEMFFYGVFALALVLPRVAAIAAISVLFSMM
                     TIAGALLPLPQPLRFWADPQILEFVYGMLLAEAYLRGFRLSRPAAVLAFLAGAGGVML
                     YEPGISSSALPRGIAWGLPAAAIFAGVVLSERWSARSTGILPALGAASYSLYLTHPVL
                     FIFMALYFTRLGLPAYSPLLLTAGLWLLGAVVIAAVTYVAFERPVTRFLQRRIGSRPA
                     A"
     gene            complement(739..1137)
                     /locus_tag="VE686_03520"
     CDS             complement(739..1137)
                     /locus_tag="VE686_03520"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY83555.1"
                     /translation="MSLSARFLVLGALAATVTGCSVASQVEYYSHVGPVHVELSCGQS
                     FQLFENPGHRLILVKPYPVSEAAYLACTAFSRDARNADLGARAMQAVERHFEKTKRPD
                     CRGTGARPMGLGNVEVTYDCTPKPAVPKRS"
     gene            complement(1221..2147)
                     /locus_tag="VE686_03525"
     CDS             complement(1221..2147)
                     /locus_tag="VE686_03525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009493228.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar kinase"
                     /protein_id="HYY83556.1"
                     /translation="MEALFIGQAYIDVTFLADEIPTGDEKAVARDYAISFGGNAVTAA
                     FACAKLGIAPDLLASVADDWLGRMFIDMAAKYGISVHHRKVRESSLSFIMPHGGQRAI
                     VRCRDDDYLHPFPPLNLGRCRALHLDGHQGDAAIHYAKACREAGILTSLDGGGLRANT
                     HDLLAFIDVAVVAERLCEQMDLSPAGMLTYLRERGCRVGGVTLGHRGMLWYDEDGREQ
                     HLPALDVPETLVVDTNGAGDIFHGAYVYSAMAHPQARWRDHFVFARGASSHSIQHLGN
                     EASLPGLGDVARAQERFGEKAPLDAAALEGAA"
     gene            2407..>2964
                     /locus_tag="VE686_03530"
     CDS             2407..>2964
                     /locus_tag="VE686_03530"
                     /inference="COORDINATES: protein motif:HMM:NF017088.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042314 - bacteriochlorophyll binding
                     [Evidence IEA];
                     GO_process: GO:0019684 - photosynthesis, light reaction
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PRC-barrel domain-containing protein"
                     /protein_id="HYY83557.1"
                     /translation="MLKKHMAACLVTTALLAAPALAQTSSGTSSGSGASSAAASSGKF
                     LSEEKPNQWRASKLVGVDVYGPNKEKVGDINEVLIDRNGKAEAIVIGVGGFLGIGEKD
                     VAVPFDQVRWSDNPNDVRSTASTGGAGGTGATATGGAASNTAGTAGTAGGAGTAGGAG
                     TSGSTTAGTGAGATTGSTGTAGAART"
BASE COUNT          433 a          997 c         1070 g          464 t
ORIGIN      
        1 cggatctggc cgctgctgct gacgggatgg acgctcaatt acgagatgtt cttctacggc
       61 gtctttgcgc tcgcgctggt ccttccgcga gtcgccgcca tcgcggccat ctccgtgctg
      121 ttcagcatga tgacgatcgc cggcgccttg ctgccgctgc cgcagccgct gcgcttctgg
      181 gccgatccgc aaatcctcga gttcgtctac ggcatgttgc tcgccgaagc gtatctcagg
      241 ggctttcggc tgtcgcggcc cgccgccgtg cttgccttcc tcgccggggc cggaggggtc
      301 atgctgtacg agccgggaat ctcctcgagc gctcttcctc gcggcattgc gtgggggctg
      361 ccggccgcgg ccatcttcgc cggggtggta ttgagtgagc ggtggagcgc ccgctcgacc
      421 gggatcctgc ccgccctcgg cgcggcctcc tactcactct accttaccca ccccgtcctg
      481 ttcatcttca tggccctgta cttcacgagg ctcgggctcc cggcctactc cccgctgctg
      541 ctcacggccg ggctctggct cctcggagcc gtcgtcatcg ccgctgtgac ctacgtcgct
      601 ttcgagcgac cggtcacccg cttcctgcag cggcggatcg ggagtcggcc ggcggcctag
      661 gacaccgccg gaccgtgcgt gtccgtgcgg cttagctgct ggggtggcgc ggctccgacg
      721 cgccctcggc cccggcgctc agcttctctt cggcacggca ggcttcggcg tgcagtcgta
      781 ggtgacctcg acgttgccga ggcccatggg cctggcgccc gtcccgcggc agtccggccg
      841 cttggtcttc tcgaagtggc gctcgaccgc ctgcatggcg cgcgcgccga ggtccgcgtt
      901 gcgcgcatcc ctcgagaatg ccgtgcaggc gagataggcc gcctcgctca ccgggtaggg
      961 cttcacgagg atgagccggt ggcccgggtt ctcgaacagc tggaaactct gaccgcacga
     1021 cagctcgacg tgcaccggcc cgacgtggga gtagtactcg acctgggatg ccaccgagca
     1081 gccggtgacc gtcgcggcga gcgccccgag gacgaggaag cgggcggaaa gggacatcgg
     1141 agaccggcgt ttcgagcggg gcagggtgcc cgttgtggcg caaggtctct cggggggcaa
     1201 gcgacgcgag ccgcccccta tcaggcggcg ccttcgagcg cggccgcgtc caggggtgcc
     1261 ttctcgccga agcgctcctg cgcccgcgcc acgtcgccga gcccgggaag gctcgcctca
     1321 ttgccgagat gctggatgga gtgactcgag gcaccccgcg cgaagacgaa gtggtcgcgc
     1381 cagcgcgcct gcgggtgcgc catggccgag tagacgtaag cgccgtggaa gatgtcgccg
     1441 gcgccattgg tgtcgacgac aagggtctcg ggcacgtcga gcgcgggcag gtgctgctcg
     1501 cgcccgtcct cgtcgtacca gagcatgccg cgatgcccga gggtgacgcc gccgacgcgg
     1561 cagccgcgct ccctgagata cgtgagcatg ccggcgggcg agaggtccat ctgctcgcac
     1621 agccgctccg ccacgaccgc tacgtcgatg aaggccagga gatcgtgcgt attggcgcgc
     1681 aagccaccac cgtcgagcga tgtgagaatg cccgcctcgc ggcatgcctt ggcgtagtgg
     1741 atggccgcat cgccctggtg gccgtcgaga tgcagggctc ggcagcgccc gaggttgagg
     1801 ggcgggaagg gatgcaggta gtcgtcgtcg cggcagcgca cgatggcgcg ctggccgccg
     1861 tgcggcatga tgaacgacag cgacgactcg cggaccttcc ggtgatggac cgagatgccg
     1921 tacttcgcag ccatgtcgat gaacatccgc ccgagccagt cgtccgccac cgaggcgagc
     1981 aggtccgggg cgatgccgag cttggcgcag gcgaacgcgg ccgtgaccgc gttgccgccg
     2041 aatgagatgg cgtaatcgcg cgcgaccgcc ttctcgtcgc cggtcgggat ctcgtcggcg
     2101 aggaaggtga cgtcgatata ggcctgaccg atgaagagcg cttccatgcc tgctccgggg
     2161 cgcgattcgc agcgtcgacc cgcaggagca tctatgacgc tcgcgccgga aggcaaatcg
     2221 gccggcccga acacctgtgc gcagacttcg gacgacggct cgaggccttc gagagccgct
     2281 aggcgcggtc cagagcacgt cgccggggcg gagcggcgcg tagaaacaaa cggatggttc
     2341 gtccgttgtc agggcatgcg gccgggatac ccctgtcccg gcgcataatc cttcatggag
     2401 gaagacatgc tgaagaagca catggccgcg tgcctcgtca cgacggctct cctggcggct
     2461 ccggccctgg cgcagacgag ttcgggcacc agctcgggct ccggcgcgtc gtcggccgcc
     2521 gcgagctcgg gcaagttcct gagcgaggag aagccgaacc agtggcgcgc ctccaagctc
     2581 gtcggcgtcg acgtgtacgg ccccaacaag gagaaggtcg gcgacatcaa cgaggtcctg
     2641 atcgatcgga acggcaaggc cgaggcgatc gtgatcggcg tcggcggatt cctcggcatt
     2701 ggcgagaagg acgtcgcggt gccgttcgat caggtccgct ggagcgacaa cccgaacgac
     2761 gtgcgctcga cggcctcgac gggcggggcc ggcggcacgg gcgcgacggc gaccggcggt
     2821 gcggcttcga acacggctgg aacggccggg acggccggcg gcgcgggcac ggctggcggc
     2881 gccggaacga gcgggtcgac gacggccggc acgggcgctg gcgctacgac gggctcgacc
     2941 ggaacggctg gagcggctcg cacc
//
LOCUS       DASQWN010000189         3431 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1321459, whole genome shotgun sequence.
ACCESSION   DASQWN010000189 DASQWN010000000
VERSION     DASQWN010000189.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 3431)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3431)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3431
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1321459"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..629)
                     /gene="ilvC"
                     /locus_tag="VE686_03535"
     CDS             complement(<1..629)
                     /gene="ilvC"
                     /locus_tag="VE686_03535"
                     /EC_number="1.1.1.86"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009337079.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ketol-acid reductoisomerase"
                     /protein_id="HYY83558.1"
                     /translation="MRVYYDRDADINLIKGKKVAIVGYGSQGHAHALNLRDSGVKEVA
                     VALRKGSASAAKAQKEKLPVMEVAEAAKWADVIMMLTPDELQADIYRDHLHANMKDGA
                     ALMFAHGLNVHFNLIEPRPDIDVLMIAPKGPGHTVRSEYERGGGVPCLLAIHKDASGN
                     AHDLGLSYGAAIGGGRAGIIETSFKEECETDLFGEQTVLCGGLVELIKAG"
     gene            918..1328
                     /locus_tag="VE686_03540"
     CDS             918..1328
                     /locus_tag="VE686_03540"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY83559.1"
                     /translation="MLRVDTAFLLIASACLIVGTSMGIAMGIAHDFQFAPVHAHLNLL
                     GWASLALFGLTYRAYPMLANSRIALIHLAVSGVSALMFPAGIYFSVAHGAPGLAIGAS
                     LLWFVGAVLFFANLVRTFVFAPTVRAPQPHRALA"
     gene            complement(1347..1544)
                     /locus_tag="VE686_03545"
     CDS             complement(1347..1544)
                     /locus_tag="VE686_03545"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY83560.1"
                     /translation="MTFDPMQAAALACAVAAIACLLLPTFRGGGGLPAGTRPDTRAML
                     GSPLYWAGLGLMAVAALLLVL"
     gene            1631..2182
                     /locus_tag="VE686_03550"
     CDS             1631..2182
                     /locus_tag="VE686_03550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009764101.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF924 family protein"
                     /protein_id="HYY83561.1"
                     /translation="MQALATPQEVVAFWREAGRERWFTNDEAFDALCRERFLPTYEAA
                     ARGDLNDWELVPDGALAVVLLLDQFPRNMFRGTRRVYQTDATALDVADRAIERGFDSQ
                     VEPALRGFFYLPFEHSESLADQERSVALHEAAGDEDGLTWARHHHDIVARFGRFPHRN
                     AILGRESTPEELAYLAQEDAFKG"
     gene            complement(2189..2830)
                     /locus_tag="VE686_03555"
     CDS             complement(2189..2830)
                     /locus_tag="VE686_03555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003598266.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_process: GO:0006749 - glutathione metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione S-transferase family protein"
                     /protein_id="HYY83562.1"
                     /translation="MTLKLYYSPGSCALAPHITLEETGAAYEPVRVALAEGEQNQPAY
                     RAINPKGRVPALAEGGFVVTENPAILRYIARRFPAAHLWPEDPREEARCAEWLAWMSS
                     TIHVAYAHVRRAERYADSEAAKAEVIAKGKETCRGLWQDVDRRLGTGPWAVGERFSVA
                     DPYLQVFWNWGRGQVLGFDMPTLVPNWTAHARRMAERPATRHVFEREGLELPA"
     gene            complement(2881..3423)
                     /gene="ilvN"
                     /locus_tag="VE686_03560"
     CDS             complement(2881..3423)
                     /gene="ilvN"
                     /locus_tag="VE686_03560"
                     /EC_number="2.2.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010684516.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:1990610 - acetolactate synthase regulator
                     activity [Evidence IEA];
                     GO_process: GO:0009082 - branched-chain amino acid
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetolactate synthase small subunit"
                     /protein_id="HYY83563.1"
                     /translation="MNAMNTHYPDPTRVEPVNRHTLAVIVDNEPGVLARIAGLFSGRG
                     YNIESLTVTETEHQQHISRITIVTTGTNAVIEQIKAQLERLVPVHRVVDLTVQGEAME
                     RELCLVKVVGKGENRVEAMRLASAFGARTLDATLSSFVFELTGTTDEIERFIALMAGI
                     GLAEVSRTGIAAMSRGAEGM"
BASE COUNT          478 a         1185 c         1196 g          572 t
ORIGIN      
        1 ccggccttga tcagctcgac gaggccgccg cacaggacgg tctgctcgcc gaagaggtcg
       61 gtctcgcact cttccttgaa gctcgtctcg atgatgccgg cgcgcccgcc gccgatggcg
      121 gcaccgtacg acaggccgag gtcgtgggcg ttgccggagg catccttgtg gatcgcgagc
      181 aggcagggca ccccgccccc gcgctcgtat tcggagcgga ccgtgtggcc gggacccttg
      241 ggggcgatca tcaggacgtc gatgtcgggc cggggctcga tgaggttgaa gtgcacgttg
      301 aggccgtgcg cgaacatcag cgccgcgccg tccttcatgt tggcgtgcag gtggtcgcgg
      361 tagatgtccg cctggagctc gtcgggggtc agcatcatga tcacgtcggc ccacttggcg
      421 gcctcggcga cctccatgac gggaagcttc tccttttgcg ccttggcggc ggaggcggag
      481 cccttgcgca gcgccaccgc gacctccttc acgccggagt cgcgcaggtt gagcgcgtgc
      541 gcatggccct ggctgccgta gccgacgatg gcgaccttct tgcccttgat cagattgatg
      601 tcggcgtcgc gatcgtaata gacgcgcatg gctgccctct ttgtccccgt tgcaagttgt
      661 cgtgtgaagc gaagcccgga cgtgctgtcg ggctgaagag ttcgcgcgcc ttttagcggc
      721 ctctctcagg gaagggaagg gcgcatcggc ccgcatgcgg cggggcgggc gcgaccgcga
      781 ttttcgcgac gaaacacggc tgaaaccaac gaaaccgtgc tgaaacgcaa ttccggttgt
      841 ctgacggcgg gcgcacgcat aacccttgcg ggcaccagca gcgctcctca ccgccgctgc
      901 cggaggggtt ctcttccatg ctgcgcgtcg acaccgcctt cctgctcatc gcttctgcgt
      961 gcctcatcgt cggcacctcg atggggatcg ccatgggcat tgcccacgac ttccagttcg
     1021 cgcccgtcca cgcgcacctc aacctcctcg gctgggcctc gctggcgctg ttcgggctga
     1081 cctacagggc ctatccgatg ctggcgaatt cgcgcatcgc cctcatccac cttgcggttt
     1141 cgggcgtgag cgccctgatg ttcccggccg gcatctactt ctccgtcgcg cacggcgcac
     1201 cgggcctcgc catcggcgcc tccctgctgt ggttcgtcgg agcggtgctg ttcttcgcca
     1261 acctcgtgcg caccttcgtt tttgccccca cggtgcgggc accgcagccg caccgcgccc
     1321 tcgcctgacc cgggcctcgc cggccgtcag agcacgagaa gcagagcggc gacggccatg
     1381 agcccgagcc cggcccagta gagcggcgat cccagcatcg cccgggtgtc cggacgcgtg
     1441 ccggccggca gcccgccgcc gccccggaac gtcgggagca gcaggcaggc gatcgccgcg
     1501 actgcgcagg cgagcgccgc ggcctgcatc ggatcaaacg tcattgtagc ctccgatccg
     1561 gaccgcccgc cggaacggcg ccggcgtgac agggttgtcg cgtgcgatgg tcgcaccgag
     1621 gactttcccc atgcaagctc tcgcaactcc gcaggaggtg gtcgcgttct ggcgcgaggc
     1681 cggccgggag cgctggttca ccaacgacga ggccttcgac gccctgtgcc gcgagcgctt
     1741 cctcccaacc tacgaggcgg cggcgcgggg cgacctcaac gattgggagc tcgtgcccga
     1801 cggggccctc gcggtggtgc tgctcctcga ccagttcccg cgcaacatgt tccgcggcac
     1861 acggagggtc taccaaaccg atgcgaccgc actcgacgtc gcggaccggg caatcgagcg
     1921 cgggttcgac agccaggtcg agccggcgct gcgcggcttc ttctatctgc cgttcgagca
     1981 ctccgagagc ctcgccgacc aggagcgctc ggtcgcgctc cacgaggcgg ccggcgacga
     2041 ggacgggctc acgtgggcgc gccaccacca cgatatcgtc gcacggttcg gccgctttcc
     2101 gcaccgcaac gccatcctcg ggcgcgagag cacgccggag gagctggcct atctcgcgca
     2161 ggaggacgcc ttcaagggct gacggccctc acgccggcag ctcgagaccc tcgcgctcga
     2221 agacgtgccg ggtcgcaggg cgctcggcca tgcggcgggc gtgggcggtc cagttcggga
     2281 cgagggtcgg catgtcgaag ccgaggacct ggccgcggcc ccagttccag aacacctgca
     2341 ggtacgggtc ggcgacggag aacctctcgc ccacggccca gggcccggtc ccgagacgcc
     2401 ggtcgacgtc ctgccacagg ccgcggcagg tttccttccc cttcgcgatg acctcagcct
     2461 tggcggcctc gctgtcggcg tagcgctcgg cgcggcgcac gtgcgcgtag gcgacgtgga
     2521 tcgtcgagga catccaggcg agccactcgg cgcagcgggc ctcctcgcgc gggtcctcgg
     2581 gccacaggtg ggcggccggg aagcgccggg cgatgtagcg caggatggcc gggttctcgg
     2641 taacgacgaa gccgccctcg gccagcgccg gcacgcggcc cttcgggttg atggcgcggt
     2701 aggccggctg gttctgctcg ccctccgcaa gggcgacgcg caccggctcg tacgccgcgc
     2761 ccgtctcctc gagggtgatg tggggcgcca gcgcgcacga tccgggggag tagtagagct
     2821 tgagggtcat cgttggttcc cggttcacgt ttttccgacg agccttggcg cgtccacgga
     2881 ttacatcccc tcggcgccgc gactcatggc ggcgatgccg gtgcgggaga cttcagcgag
     2941 gccgatgccg gccatcaggg cgatgaagcg ctcgatctca tcggtggtcc cggtgagctc
     3001 gaagacgaag gaactcaggg tcgcgtcgag cgtccgggcg ccgaacgcgg aggcgagccg
     3061 catggcctcg acccggttct cgcctttgcc gacgaccttc acgaggcaga gctcgcgctc
     3121 catcgcctcg ccctggacgg tgaggtcgac gacgcggtgc accggcacga ggcgctcgag
     3181 ctgtgccttg atctgctcga tgaccgcgtt ggtgccggtc gtgacgatgg tgatgcgcga
     3241 gatgtgctgc tggtgctcgg tctcggtgac cgtcaggctc tcgatgttgt agccccggcc
     3301 cgagaacagg cccgcgatgc gcgccagcac gccgggctcg ttgtcgacga tcaccgccag
     3361 cgtgtggcgg ttgaccggct cgacgcgggt cgggtcgggg tagtgggtgt tcattgcgtt
     3421 catgctcgca a
//
LOCUS       DASQWN010000190         3796 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_31461, whole genome shotgun sequence.
ACCESSION   DASQWN010000190 DASQWN010000000
VERSION     DASQWN010000190.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 3796)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3796)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3796
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_31461"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(672..1217)
                     /locus_tag="VE686_03565"
     CDS             complement(672..1217)
                     /locus_tag="VE686_03565"
                     /EC_number="2.4.2.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009763705.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003999 - adenine
                     phosphoribosyltransferase activity [Evidence IEA];
                     GO_process: GO:0006168 - adenine salvage [Evidence IEA];
                     GO_process: GO:0009116 - nucleoside metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenine phosphoribosyltransferase"
                     /protein_id="HYY83564.1"
                     /translation="MDQRLATDLKTAIRSIPDYPKPGIMFRDITTLLGDARAFRRAVD
                     ELVHPYAGGQVDKVAGIEARGFILGGAVAHQLSSGFVPIRKKGKLPHETVRIAYSLEY
                     GVDEMEIHTDAIGQGERVLLVDDLIATGGTAIAAANLLRQMGARIVAACFIIDLPDLG
                     GADKLRALGVEVRTLVSFEGH"
     gene            complement(1282..2163)
                     /locus_tag="VE686_03570"
     CDS             complement(1282..2163)
                     /locus_tag="VE686_03570"
                     /EC_number="2.4.2.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018042316.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0017061 - S-methyl-5-thioadenosine
                     phosphorylase activity [Evidence IEA];
                     GO_process: GO:0009116 - nucleoside metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="S-methyl-5'-thioadenosine phosphorylase"
                     /protein_id="HYY83565.1"
                     /translation="MAKAVLGVIDGSGVYDLPGLTEVREQRIASPWGEPSDALRIGRI
                     GATEVVFLPRHGRGHRLSPSDINYRANIDAMKRAGVTDLVSLSACGSFRKEFYPGLFV
                     LVDQFVDRTHKRESSFFGTGCVAHVSMAHPVGPRLQERLAQAAAAEDVAVHRGGTYVC
                     MEGPQFSSLAESLTYKGLNYDVIGMTNMPEAKLAREAEITYATVAMVTDYDCWHPEHD
                     AVEVADIIAVVRANADKAARLVARMAKDFPAEHEPCPVRSDRALDTAIMTAPEHRDAA
                     LMAKLDAVAGRVLKARD"
     gene            complement(2227..3120)
                     /locus_tag="VE686_03575"
     CDS             complement(2227..3120)
                     /locus_tag="VE686_03575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019904972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c1"
                     /protein_id="HYY83566.1"
                     /translation="MLTKPAAVAAAAAVAALVGFADVARAAGETPTPPQEKWSFSGPF
                     GTFDRGQLQRGFKVYREVCANCHGLKLVAFRMLAQPGGPEFSKKQVDALAAEYKIKDG
                     PNESGDMFERPGRAADFFPSPFPNEQAAAAANGGKAPPDLSVMAKARTYERGFPWFVI
                     DAVTQYQEQGPDYLTALLQGYKDPPAGLNVPAGTHYNEYYPGHLIAMPKPINDGQVSY
                     PQDNGKPVVPETVPQYSHDVTAFLMWAAEPHLEARKRLGFQVMLFLILFSVLLYFTKK
                     KVWADVGGEVHGMQPELHKTS"
     gene            complement(3141..>3796)
                     /locus_tag="VE686_03580"
     CDS             complement(3141..>3796)
                     /locus_tag="VE686_03580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020091775.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="cytochrome b"
                     /protein_id="HYY83567.1"
                     /translation="VLHVWALHVPGQNNPTGIPIKSGKDAVPFTPYATIKDIFAVVVF
                     MLFFAWWVFYIPNYLGHADNYIPANPAVTPSHIVPEWYFLPFYAILRAIPDKLGGVLA
                     MGAAIVIWVFMPWLDTSKVRSTAYRPLYKQFFWVFVAVCVLLGWLGAKPAEGAYVLAS
                     RVCTFYYFAHFLVIMPLLGLFERPTPMPGSILESVTGPHRSGSGMPAPAAAAPQSRG"
BASE COUNT          611 a         1268 c         1337 g          580 t
ORIGIN      
        1 cgggacgggt ccgcggcgca ggatccgccg cgcgggtttg gagcccgcgg gcggcaggga
       61 tccatctgcg gcgtgtgaac ccgcggatgg cagggccagg gcccaggtgc ctagcgcaac
      121 cctgacccgg acaccccgcg ctcggcagcg ccttgatccc tggcctcgcg cttcggctcc
      181 tcgcgtgggg agccttaagc gcgtctcccc gcggacccac cctcatgggg atgggacgga
      241 cgaggcctcc gccaaggccg ggcggcaccc cctggaaggt gccgttaccg gggaggcggg
      301 ggatcctgag gactcccggg ctgtgtcgtc ccgggctcag cgccgcatca gaccgaagaa
      361 gctcgctttg gggcgtctca cttcgaccca ccgcccgagc tcgttccggc cttttgagcc
      421 ggacctcgca ccgcgcgatg ccgccccacg accagacacc tccggaggtg cccctctgcc
      481 gggcgggacg ggagatgtaa aagcacaaag caagaacatt gtcaaggaca catgaccagc
      541 ggccatcccc cgcgccgtca tcctcgggcg ccgcgccagc gggaacgcga gggccccgtc
      601 ggaggtctgc tacattaagg tcctcgggtc ttcgcttcgc ttcgcccgag gacgacggcc
      661 gtcgaagggc gtcagtggcc ttcgaagctc acaagcgtgc gaacctccac gccaagcgcg
      721 cgcagcttgt cggcgccgcc gaggtccggc aggtcgatga tgaagcaggc ggcgacgatc
      781 cgggcgccca tctgccgcag aaggttcgcg gcagcgatcg ccgtgccccc cgtggcgatg
      841 aggtcatcga cgaggagcac ccgctcgccc tgcccgatgg catcggtgtg gatctccatc
      901 tcgtcgacgc cgtactcgag cgaataggcg atgcgcaccg tctcgtgcgg cagcttgccc
      961 ttctttcgga tcggcacgaa gccggaggag agctggtgcg ccaccgcccc gcccaggatg
     1021 aagccgcgcg cctcgatgcc cgcgaccttg tcgacctgcc cgccggcgta agggtgcacg
     1081 agttcgtcga cggcgcgccg gaacgcccgt gcgtcgccga gcagcgtcgt gatgtcccgg
     1141 aacatgatcc cgggcttcgg gtagtccggg atcgagcgga tcgcggtctt cagatccgtg
     1201 gcgaggcgct ggtccatgtc tttccttcag gcgatggcag cagctggccg atcacgcagg
     1261 gtacccgccc gacccgcaaa ctcaatcacg ggctttcagc accctgcccg ccacggcgtc
     1321 gagcttcgcc atcagcgccg catcgcggtg ctcgggggcg gtcatgatgg cggtgtccag
     1381 cgccctgtcg gagcgcactg ggcaaggctc gtgctcggcc ggaaaatcct tagccatgcg
     1441 ggcgacgagg cgagcggcct tgtcggcgtt ggcccggacc acggcgatga tgtcggcgac
     1501 ctcgacggcg tcgtgctcgg gatgccagca gtcgtagtcg gtgaccatgg cgacggtggc
     1561 gtaggtgatc tcggcctcgc gggcgagctt cgcctccggc atgttggtca tgccgatcac
     1621 gtcgtagtta aggcccttgt aggtgagcga ctcggcaagg ctcgagaact gcggcccctc
     1681 catgcacacg taggtgccgc cgcgatggac cgcgacgtcc tcggccgccg ccgcctgggc
     1741 caggcgctcc tgcaggcgcg gcccgacggg atgcgccatg gagacatggg cgacgcagcc
     1801 ggtgccgaag aacgagctct cgcgcttgtg cgtgcggtcg acgaactggt cgacgagcac
     1861 gaagagcccc ggatagaact ccttcctgaa cgagccgcag gccgacagcg acacgaggtc
     1921 ggtgacgccg gcccgcttca tcgcgtcgat gttggcgcgg tagttgatgt cggacggcga
     1981 caggcggtgc ccgcggccgt ggcggggcag gaacaccact tccgtcgcgc cgatgcggcc
     2041 gatgcgcagg gcgtcggagg gctctcccca cggcgacgcg atgcgctgct cgcgaacctc
     2101 cgtcaggccc ggcaagtcgt agacgcccga cccgtcgatc acgccgagaa ccgccttcgc
     2161 catcaccctc tcccctcgaa cgaaaaaggc cccgagcggg gccttcgtcg tcgcttgttg
     2221 ccgccctcag gaggtcttgt gcagctccgg ctgcatgccg tgcacctcgc cgccgacatc
     2281 ggcccagacc ttcttcttgg tgaagtacag gaggaccgag aaaaggatca ggaagagcat
     2341 gacctggaag ccgaggcgct tgcgcgcctc gagatgcggc tcggccgccc acatcaggaa
     2401 cgcggtgacg tcgtgcgagt actgcggcac cgtctcgggc accaccggct tgccgttatc
     2461 ctgcggatac gagacctgcc cgtcgttgat gggctttggc atcgcaatca ggtggccggg
     2521 gtagtactcg ttgtagtgtg tgccggccgg cacgttcaag cccgccgggg ggtccttgta
     2581 gccctgcagc agggccgtga ggtagtcggg cccctgctcc tggtactggg tcacggcgtc
     2641 gatgacgaac cagggaaagc cgcgctcgta ggtgcgggcc ttcgccatca cggacaggtc
     2701 cggcggagcc ttgccgccgt ttgcggccgc agccgcctgc tcgttcggga acggcgacgg
     2761 gaagaagtct gccgcgcggc cggggcgctc gaacatgtcg ccggattcgt tcggcccgtc
     2821 cttgatcttg tactcggccg cgagcgcgtc gacctgcttc ttcgaaaact ccggcccgcc
     2881 gggctgcgcc agcatgcgga aggccacaag cttgaggccg tggcagttgg cgcagacctc
     2941 gcggtagacc ttgaagccgc gctgcagctg gccgcggtcg aaggtgccga aaggacccga
     3001 gaagctccac ttctcctgcg gcggcgtcgg ggtctcaccc gcagcccggg cgacgtcggc
     3061 gaacccgacg agcgccgcga cggcagcggc tgccgcgacg gcggcgggct tcgtgagcat
     3121 gctgatgtgc ctcatgatcc tcagccccgg gattgcggtg cggcggccgc gggggccggc
     3181 atgcccgatc cgctccgatg cggtccggtg acggattcga ggatcgaccc gggcatgggc
     3241 gtcgggcgct cgaacagccc gagcaggggc atgatcacca ggaagtgggc gaagtagtag
     3301 aaggtgcaga cgcgcgaggc gagcacgtag gcgccctccg ccggcttggc gccgagccag
     3361 ccgagcagca cgcacacggc cacgaagacc cagaagaact gcttgtagag cggccggtag
     3421 gcggtggagc gcaccttgga ggtgtcgagc cagggcatga acacccagat cacgatggcg
     3481 gcccccatgg ccagcacgcc gccgagcttg tccgggatgg cgcgcaggat ggcgtagaag
     3541 ggcaggaagt accactccgg cacgatgtgc gacggggtca cggcggggtt cgccgggatg
     3601 tagttgtccg cgtggccgag atagttcggg atgtagaaca cccaccaggc gaagaacagc
     3661 atgaacacca ccacggcgaa gatgtccttg atcgtcgcat agggggtgaa gggcaccgcg
     3721 tccttgcccg acttgatcgg aatgccggtc gggttgttct ggcccggcac gtgcagcgcc
     3781 cagacgtgca ggacca
//
LOCUS       DASQWN010000191         4005 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_511216, whole genome shotgun sequence.
ACCESSION   DASQWN010000191 DASQWN010000000
VERSION     DASQWN010000191.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 4005)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4005)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4005
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_511216"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..228)
                     /locus_tag="VE686_03585"
     CDS             complement(<1..228)
                     /locus_tag="VE686_03585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015684738.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-binding protein"
                     /protein_id="HYY83568.1"
                     /translation="MKAIIVGGGIGGLTTALMLHQRGIACEIYEQADAVRELGVGINT
                     LPHAILELKKLGLLERLDEAAIRTFELIYTNR"
     gene            complement(365..2722)
                     /locus_tag="VE686_03590"
     CDS             complement(365..2722)
                     /locus_tag="VE686_03590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018319241.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003959 - NADPH dehydrogenase activity
                     [Evidence IEA];
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_function: GO:0050661 - NADP binding [Evidence IEA];
                     GO_function: GO:0071949 - FAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional salicylyl-CoA
                     5-hydroxylase/oxidoreductase"
                     /protein_id="HYY83569.1"
                     /translation="MKIAVVGGGPAGLYFAILTKKATPSADVTVYERNRADDTFGFGV
                     VFSDATLDNFEKHDLESYRRITQEFAYWDDIAIHFKGSVHRIGGNGFCGCSRRALLLI
                     LQDRARELGVKLVFQAEVDNEARFADCDLVVVADGVNSRFRDKHADHFRPEVDVRPNK
                     FTWMGSTRPLDAFTFIFQDTEWGPFIAHAYQYEAGASTWVFETDPQTFERAGLGAMSE
                     AESARLMEHIFGWFLDGHPVLTNRSIWRSFPMIRNERWVRGNMVLLGDAKASAHFSIG
                     SGTKLAMEDAIALHEALRQEPTIDAALTRYETGRREEVEKTQHAADVSLVWFEHVARF
                     WDFDPVQFAFGVMTRAKAITYDNLRLRAPEFVAEVDRTFARQVRARGFDVDADAPTVP
                     MFQPLALRDMVLPNRVVVSPMDMYSAIDGVPTDWHLVHYGSRAVGGAALMFTEMTCPS
                     PEARITLGCAGLWSDEQERAWAKIVDFVHANSAAKFCLQLGHSGRKGATKLMWEGMDR
                     PLETGAWDICSASPIPYLPDSQVPREVTRGDMDRITAEFVQAAERGERAGFDMLELHC
                     AHGYLLASFLSPLTNRRGDAYGGSIENRLRYPLEVFDALRAVWPKHKPMSVRISATDW
                     AEGGVTGEDAVAIARAFAEHGVDLVDVSTGQTVREARPIYGRMFQTPFSDQIRNEAQV
                     ATMCVGNITSADQVNTILAAGRADLVALARPHLVDPFFTMKAAAWYGVASIHCPPQYQ
                     PGKDQIFRNSVRDRADLDDLRLRAKPKTRAELKMEREAASKLAAE"
     gene            complement(2822..3022)
                     /locus_tag="VE686_03595"
     CDS             complement(2822..3022)
                     /locus_tag="VE686_03595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015821489.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY83570.1"
                     /translation="MTRFILASLVVASAALAWSGPAAAHGCHKGWQQGGAQGWHSHGA
                     TCEPRRGLSVTHRAKRTTRRTS"
     gene            complement(3064..>4005)
                     /locus_tag="VE686_03600"
     CDS             complement(3064..>4005)
                     /locus_tag="VE686_03600"
                     /EC_number="2.3.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008971144.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003985 - acetyl-CoA C-acetyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006631 - fatty acid metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA C-acyltransferase"
                     /protein_id="HYY83571.1"
                     /translation="CGSGMDAVATVARAIRAGELGLALAGGVESMSRAPFVMPKAESA
                     FSRSAEIHDTTIGWRFVNPLIKERHGVDSMPETAENVAEEFQVTRDDQDAYALRSQQR
                     AARAQADGTLAAQMVAVEVPGGRVGPTRVERDEHPRADVTLESLQKLKAIVRPGGTVT
                     AGNASGVNDGAAAMIVASAEAVEKHGLTPRARVLGMASAGVEPRIMGIGPVPAAGKLM
                     ERLGLKIGDFDIIELNEAFAAQVLACLRGLGVPDDAEHVNPNGGGIALGHPLGMSGAR
                     IAGDVVQELGKRSGRYGLATMCVGVGQGVAMAFERVS"
BASE COUNT          602 a         1371 c         1407 g          625 t
ORIGIN      
        1 gcggttggtg taaatgagct cgaaagtgcg gatcgcggcc tcgtcgaggc gctccagcag
       61 cccgagcttc ttcagctcca ggatggcgtg cggcagggtg ttgatgccga cgccgagctc
      121 gcgcaccgcg tccgcctgct cgtagatctc gcaagcgatg ccgcgctgat gcagcatcag
      181 cgcggtcgtg agcccgccga tgcccccgcc gacgatgatg gccttcatcg ccccctccct
      241 tactcaacaa ctcccgtcat cctcggccgg agcgctgcag gcgcgcagag ccgaggaccc
      301 cgtcgaagcc taccacgagg tcctcgggtc tgcgctacgc tccgtccaag gatgacagct
      361 gtggttactc cgccgcgagc ttgcttgccg cctcgcgctc catcttcagc tccgcccgcg
      421 tcttaggctt ggcgcgcagc cggaggtcgt cgaggtcggc gcggtcgcga acgctgttgc
      481 ggaagatctg gtccttgccc ggctggtact gcggcggaca gtggatcgac gccacgccgt
      541 accaggccgc cgccttcatg gtgaagaacg ggtcgacgag gtgcggccgc gccagcgcga
      601 cgagatcggc gcgcccggcc gccaggatgg tgttgacctg gtcggccgag gtgatgttgc
      661 cgacgcacat cgtggcgacc tgcgcctcgt tgcgaatctg gtcggagaac ggcgtctgga
      721 acatgcgccc gtagatcggg cgcgcctccc gcaccgtctg ccctgtcgag acgtcgacga
      781 gatcgacgcc atgctcggcg aaggcacggg cgatggcgac ggcgtcctcg cccgtgacgc
      841 cgccctcggc ccagtccgtc gccgagatgc gcaccgacat cggcttgtgc ttcggccaca
      901 ccgcgcgcag ggcgtcgaag acctcgagcg gatagcgcag ccggttctcg attgagccgc
      961 cataagcgtc gccgcggcgg ttggtgaggg gcgagaggaa gctcgcgagc aggtagccgt
     1021 gggcgcaatg gagctcgagc atgtcgaagc cggcgcgctc gccccgctcg gcggcctgca
     1081 cgaactccgc cgtgatgcgg tccatgtcgc cccgcgtgac ctcgcgcgga acctggctgt
     1141 cgggaaggta cgggatcggc gacgccgagc agatgtccca ggcccctgtc tcgagcggcc
     1201 ggtccatgcc ctcccacatg agcttcgtcg cgcccttgcg gccggagtgg ccgagctgca
     1261 ggcagaattt tgccgccgag ttcgcgtgca cgaagtccac gatcttcgcc caggcgcgct
     1321 cctgctcgtc gctccacagg ccggcgcagc cgagggtgat gcgtgcctcg ggcgacgggc
     1381 aggtcatctc ggtgaacatc agcgcggcac cgccgacggc gcgcgagccg tagtggacga
     1441 gatgccagtc ggtcggcacg ccgtcgatgg ccgagtacat gtccatgggc gacacgacga
     1501 cccggttcgg cagcaccatg tcgcgcaagg cgaggggctg gaacatcggc accgtcggcg
     1561 catcggcatc gacatcgaag ccgcgggccc gcacttggcg cgcgaaggtg cggtcgacct
     1621 cagccacgaa ctccggggcg cgaaggcgca ggttgtcgta ggtgatcgcc ttggcgcgcg
     1681 tcatgacccc gaacgcgaac tgcaccgggt cgaagtccca gaagcgcgcg acgtgctcga
     1741 accacacgag cgacacgtcg gcggcgtgct gcgtcttttc gacctcctcg cgccgcccgg
     1801 tctcgtaccg cgtaagcgcc gcgtcgatcg tcggctcctg ccgcagcgcc tcgtgcaggg
     1861 cgatggcgtc ctccatggcg agcttggtgc cggagccgat ggagaagtgc gcgctcgcct
     1921 tggcgtcgcc gaggagcacc atgttgcccc gcacccagcg ctcgttccgg atcatcggga
     1981 agctgcgcca gatcgagcgg ttggtcagga ccgggtggcc gtccaggaac cagccgaaga
     2041 tgtgttccat cagccgcgcc gactcggcct cgctcatggc gccgaggccg gcgcgctcga
     2101 acgtctgcgg atcggtctcg aagacccagg tcgaggcgcc cgcctcgtac tggtaggcgt
     2161 gcgcgatgaa ggggccccac tcggtgtcct ggaagatgaa cgtgaaggcg tcgagcggac
     2221 gcgtggagcc catccaggtg aacttgttcg ggcgcacgtc gacctcaggg cggaaatggt
     2281 cggcgtgctt gtcgcggaag cggctgttga cgccgtcggc gacgacgacg aggtcgcaat
     2341 cggcaaagcg cgcctcgttg tcgacctcgg cctggaagac gagcttcacg ccgagctcgc
     2401 gggcgcggtc ctgcaggatg agcaggagcg cgcggcgcga gcagccgcag aaaccgttgc
     2461 cgccgatgcg atgcaccgaa cccttgaagt ggatggcgat gtcgtcccag taggcgaact
     2521 cctgggtgat gcgccggtag ctttcgagat cgtgcttctc gaagttgtcg agggtcgcgt
     2581 cggagaacac cacgccgaaa ccgaacgtgt cgtcggcgcg gttgcgctcg tagacggtga
     2641 cgtcggccga aggggtcgcc ttcttggtca ggatggcgaa atagagccct gcgggacctc
     2701 cgccgacgac cgcgatcttc atcaatcccg ctccgggcga aagccgccgg tgacgcaaga
     2761 tgatttaagc ttgaaacaac gcccgggcca atccctcccc gcgggggagg gatgatccag
     2821 ctcagctcgt ccggcgtgtt gtccgttttg cgcggtgcgt cacgctgagg ccgcgtcgcg
     2881 gctcgcaggt cgcgccgtgg ctgtgccagc cctgggcgcc gccttgctgc cagcccttgt
     2941 ggcagccgtg cgcagcggcc gggccggacc aggccagtgc cgcggatgcg acgacgaggg
     3001 atgcgagaat gaagcgggtc atggacgcct ttcgagcttg atcgcgctgg aaaccgggtc
     3061 ggctcaggag acccgctcaa acgccatggc gacgccctgg ccgacgccga cgcacatggt
     3121 cgcgaggccg tagcgaccgc tccgtttgcc gagctcctgc accacgtccc ctgcaatccg
     3181 cgcgccagac atgccgagcg gatggccgag cgcgatgccg ccgccgttcg ggttcacgtg
     3241 ctcggcgtcg tccggcacgc ccagaccgcg aaggcacgcg aggacctggg ccgcgaaggc
     3301 ctcgttcagc tcgatgatgt cgaagtcgcc gatcttcaag ccaagccgct ccatgagctt
     3361 acccgcggcg ggcaccgggc cgatgcccat gatgcggggc tcgacgccgg ccgaggccat
     3421 gccgagtacg cgcgcgcggg gggtcagccc gtgcttctcg accgcttcgg cggaggcgac
     3481 gatcatcgcc gccgcgccgt cgttgacgcc ggaggcattg ccggccgtga cggtcccgcc
     3541 cggccgcacg atggccttga gcttctgcag gctctcgagg gtcacgtcgg cgcggggatg
     3601 ctcgtcgcgc tcgacccgcg tcgggcccac cctgccgccc ggcacctcga cggccaccat
     3661 ctgggccgca agggtaccgt ctgcctgcgc ccgggccgcc cgttgctgcg agcggagcgc
     3721 ataggcgtcc tggtcgtcgc gcgtgacctg gaactcctcg gcgacgttct cggccgtctc
     3781 gggcatcgag tcgacgccgt ggcgctcctt gatgagcggg ttgacgaacc gccagccgat
     3841 ggtggtgtcg tggatctccg cgctccggga gaacgcggac tcggccttgg gcatgacgaa
     3901 gggcgcccgg ctcatgctct cgacgccgcc ggccagcgcc aagcccagct cgcccgcccg
     3961 gatcgcgcgg gcgacggtcg cgaccgcgtc catgccggag ccgca
//
LOCUS       DASQWN010000192         2309 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_31830, whole genome shotgun sequence.
ACCESSION   DASQWN010000192 DASQWN010000000
VERSION     DASQWN010000192.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2309)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2309)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2309
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_31830"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(1..136)
                     /locus_tag="VE686_03605"
                     /pseudo
     CDS             complement(1..136)
                     /locus_tag="VE686_03605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011159240.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology.
                     GO_function: GO:0004489 - methylenetetrahydrofolate
                     reductase (NAD(P)H) activity [Evidence IEA];
                     GO_process: GO:0006555 - methionine metabolic process
                     [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="methylenetetrahydrofolate reductase"
     gene            128..265
                     /locus_tag="VE686_03610"
                     /pseudo
     CDS             128..265
                     /locus_tag="VE686_03610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012334097.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="methylenetetrahydrofolate reductase [NAD(P)H]"
     gene            405..>2309
                     /locus_tag="VE686_03615"
     CDS             405..>2309
                     /locus_tag="VE686_03615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018045189.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="homocysteine S-methyltransferase family protein"
                     /protein_id="HYY83572.1"
                     /translation="MAASEITTVHGAEVAKAIREIAHKRILVLDGAMGTEIQNLRLSE
                     ADFRGDRFGDHGHDLKGNNDLLILTQPDAIRAIHLDYFRAGSDIVETNTFSGTSIAQA
                     DYGLESIVYDLNREGARLAREAAAIARKEDGRRRFVAGAVGPTNRTLSLSPDVNNPGY
                     RAVSFDQMREAYAEQVRGLVDGGAELILIETIFDTLNAKAAVVAAHQVFAERGTALPI
                     MISGTITDLSGRTLSGQTPAAFWHSLRHAQPLSFGLNCALGAREMRAHVQELAGIADT
                     LVCAYPNAGLPNEFGLYDESPEATATMLAEFAESGLVNVVGGCCGTTPAHIQAIAQAV
                     AGKAPRQVPSLAPLMRLSGLEPFVLTKDIPFVNVGERTNVTGSAKFRKLITNGDFAAA
                     LDVAREQVASGAQIIDVNMDEGLLDSEKAMVEFLNLVAAEPDIARVPVMVDSSKFNVI
                     EAGLKCIQGKPIVNSISMKEGVEKFIAEARVCRAYGAAVVVMAFDEQGQADTVERKVE
                     ICTRAYKILTEDVGFPPEDIIFDPNVFAVATGMEEHNGYGVAFIDGARQIRETLPHVH
                     ISGGVSNLSFAFRGNEPVREAMHSVFLFHAIKAGMDMGIVNASQLAVYDEIDPELREL
                     CEDVVLNRRPD"
BASE COUNT          406 a          788 c          761 g          354 t
ORIGIN      
        1 agttctgcac gggcaggatg ccgggaacga tcgggatgtc gatgccgcgt gcccgggcct
       61 tgtcgaggaa gcggagatag aggtcgttgt cgaagaagaa ctgcgtgatt gcgcgatcgg
      121 cgcccgcatc gaccttgtcg accgcggtgt cagcgacttc cacttctaca ccatgaaccg
      181 cgccgacctc gtctacgcca tctgccggat cctggggctg cgcgagaagc cgacgactga
      241 gaagacggaa aaggcggcgg cataacttcg attccggggc ggggcaaagc cgcgagcccg
      301 gaacgcacga tccctgcccg tggcggcgcc acgtattccg gggccgagtg gttctgggtt
      361 ccgcgcccct ttgggcgtct tggaatgaca ccgagagaat gatgatggcc gcgtccgaaa
      421 tcaccaccgt ccacggcgcc gaagtggcga aggcgatccg cgagatcgcc cacaagcgca
      481 ttctggtgct cgacggcgcc atggggaccg aaatccagaa cctgcggctt tccgaggcgg
      541 acttccgggg cgaccgcttc ggcgaccacg gccatgatct gaagggcaac aacgacctgc
      601 tgatcctgac acagccggac gccatccggg cgattcacct ggactacttc cgggcgggat
      661 ccgatatcgt cgagaccaac acgttctcgg gcacctcgat cgcccaggcc gactacggcc
      721 tcgaatcgat cgtctacgat ctcaaccgcg aaggcgcgcg gcttgcccga gaggccgccg
      781 cgatcgcgcg caaggaggac ggacgccgcc gcttcgtcgc cggcgcggtc gggccgacga
      841 accgcacgct gtcgctctcg cccgacgtca acaacccggg ttaccgggcc gtcagcttcg
      901 accagatgcg cgaggcctac gccgagcagg tgaggggcct cgtcgacggc ggcgccgagc
      961 tgatcctcat cgagacgatc ttcgacacgc tcaacgccaa ggcggcggtg gtggccgcgc
     1021 accaggtctt cgctgaacgc ggcacggccc tgccgatcat gatctcgggc accatcaccg
     1081 atctgtccgg ccgcacgctg tcgggccaaa cgccggcggc attctggcac tcgctgcggc
     1141 atgcccagcc tctcagcttc ggcctcaact gcgcactcgg cgcgcgcgag atgcgcgccc
     1201 acgtccagga gctcgccggc attgccgaca cgctcgtgtg cgcctacccg aacgccggcc
     1261 tgccgaacga gttcggcctc tacgacgaga gccccgaggc cacggcgacc atgctggccg
     1321 agttcgccga gagcgggctc gtgaacgtcg tcggtggctg ctgcggcacg acgccggcac
     1381 acatccaggc gatcgctcag gcggtcgccg gcaaggcgcc gcggcaggtg ccgagcctgg
     1441 cgccgctgat gcggctctcg ggtctcgagc ctttcgtgct cacgaaggac atccccttcg
     1501 tgaacgtcgg cgagcgcacg aacgtcaccg gctcggccaa gttccgcaag ctgatcacca
     1561 acggcgactt tgcggccgcg ctcgacgtcg cgcgcgagca agtggcgagc ggggcgcaga
     1621 tcatcgacgt caacatggac gagggcctgc tcgactccga gaaggcgatg gtcgagttcc
     1681 tcaacctcgt cgccgccgag cccgacatcg cccgggtgcc ggtgatggtc gactcgtcga
     1741 agttcaacgt catcgaggcc ggcctgaagt gcatccaggg caagccgatc gtgaactcga
     1801 tctccatgaa ggagggggtc gagaaattca tcgccgaagc gcgcgtgtgc cgcgcctacg
     1861 gcgccgccgt ggtcgtgatg gccttcgacg agcagggtca ggccgacacc gtcgagcgca
     1921 aggtcgagat ctgcacgcgc gcgtacaaga ttctgaccga ggacgtcggc ttcccgcccg
     1981 aagacatcat cttcgacccc aacgtctttg ccgtcgcgac cggcatggag gagcacaacg
     2041 gctacggcgt cgcgttcatc gacggcgcgc ggcagatccg ggagacgctg ccgcacgtcc
     2101 acatctcggg gggcgtctcg aacctgtcct tcgcgttccg cggcaacgag cccgtccgcg
     2161 aggccatgca ttcggtgttc ctgttccacg ccatcaaggc cggcatggac atgggcatcg
     2221 tcaacgcgtc ccagctcgcc gtctacgacg agatcgaccc ggagctgcgg gagctgtgcg
     2281 aggacgtcgt cctcaaccgg cggccggac
//
LOCUS       DASQWN010000193         2625 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1222750, whole genome shotgun sequence.
ACCESSION   DASQWN010000193 DASQWN010000000
VERSION     DASQWN010000193.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2625)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2625)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2625
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1222750"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(177..557)
                     /locus_tag="VE686_03620"
     CDS             complement(177..557)
                     /locus_tag="VE686_03620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009493875.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HYY83573.1"
                     /translation="MAAVEPRRVAVIVEDEPDVRSLAAILLEESGLEVVEVETADEGL
                     EYLGTHAGKVAVLFTDVVMHGNLSGTDLAQVVAHNWPWIRVLVTSGYAPSEPVPANAV
                     YIQKPWRPLDVLVEVDRAARLGAG"
     gene            complement(592..810)
                     /locus_tag="VE686_03625"
     CDS             complement(592..810)
                     /locus_tag="VE686_03625"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY83574.1"
                     /translation="MSYRIVWRLVGRADRLLDSGDLDEFGERASALEAIGTLLSGFPV
                     TGRNEDAGYWWARRSPDADLEVRILLRG"
     gene            917..1576
                     /gene="gph"
                     /locus_tag="VE686_03630"
     CDS             917..1576
                     /gene="gph"
                     /locus_tag="VE686_03630"
                     /EC_number="3.1.3.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019403102.1"
                     /note="PGP is an essential enzyme in the glycolate salvage
                     pathway in higher organisms (photorespiration in plants).
                     Phosphoglycolate results from the oxidase activity of
                     RubisCO in the Calvin cycle when concentrations of carbon
                     dioxide are low relative to oxygen. This enzyme is a
                     member of the Haloacid Dehalogenase (HAD) superfamily of
                     aspartate-nucleophile hydrolase enzymes (PF00702); Derived
                     by automated computational analysis using gene prediction
                     method: Protein Homology.
                     GO_function: GO:0008967 - phosphoglycolate phosphatase
                     activity [Evidence IEA];
                     GO_process: GO:0008152 - metabolic process [Evidence IEA];
                     GO_process: GO:0009853 - photorespiration [Evidence IEA];
                     GO_process: GO:0043094 - cellular metabolic compound
                     salvage [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglycolate phosphatase"
                     /protein_id="HYY83575.1"
                     /translation="MPLKAVLCDLDGTLVDSAEDIRAALNELLAELRLDAVGREEVQG
                     MIGDGVGMLIERALAARGGDPAEAPHLVPRFLALYEPNAARSTRPYTGVAETLRALKA
                     RGLRLAVVTNKPETATREILASLDLAPLVDVVVGGDTAPERKPHPAPVLLALERLLVA
                     PDEAVMVGDNHHDVAAARAAGVRAIAVTYGYSHVPHAELGADRLIATFPELLAVLELP
                     A"
     gene            complement(1582..>2625)
                     /locus_tag="VE686_03635"
     CDS             complement(1582..>2625)
                     /locus_tag="VE686_03635"
                     /inference="COORDINATES: protein motif:HMM:NF012766.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M24 family metallopeptidase"
                     /protein_id="HYY83576.1"
                     /translation="RTVARDVSEFPAALAELGAEAAGVLVDPDRTNAFVRDTLVSAGA
                     RIVAGTDPTLARKARKNPVEIAGIRAAHERDAVAVALFLKWVGETAPARTVTELDAVA
                     ELDGFRARDARYRGTSFETIAGSGPNGAIVHYRPQASTNRRIGAGELLLVDSGAQYLD
                     GTTDITRTLAIGEPPAGARRDYTLVLKAHIAVARAIFPQGAVGGQVDTFARQHLWAAG
                     LDYDHGTGHGVGAYLGVHEGPQRLAVGDATVLEEGMLISNEPGLYKTGAYGIRTENLV
                     LVRDHPDLAGFRSFETITFAPMDGRLIDVALLEPKEIAWLDAYHAKVRAIIEPQMPAE
                     ARAWLAEATAPMA"
BASE COUNT          394 a          927 c          917 g          387 t
ORIGIN      
        1 aacaccgtgc gcggggccga tgggcccgta aaaaaatcat cgggcccgtc gcgctccgcg
       61 cagcccctcg acctttctct tcagaactcg ggccaatgag gccgcgggga caatgacgca
      121 cgtccccacc accaagtccg cgttctcgaa cgcagcagga cgaaacggcg aagtgcctag
      181 ccggcgccga ggcgggctgc gcggtcgacc tcgaccagca cgtcgagggg gcgccagggc
      241 ttctggatgt agacggcgtt cgcgggcacc ggctcggagg gagcatagcc tgacgtcacc
      301 agcacccgga tccagggcca gttgtgcgcc accacctgcg ccagatcggt gccgctgagg
      361 ttgccgtgca tgacgacgtc ggtgaacagg acggctacct tgcccgcgtg ggtcccgagg
      421 tattcgagcc cctcgtcggc ggtctcgacc tcgacgacct cgagcccgct ctcctcgagc
      481 aggatcgccg caaggctgcg cacgtcgggc tcatcctcga cgatgacggc aacgcgcctc
      541 ggctcaacgg ccgccatgca ggcctccttc aggatttcga cagggaggga atcagccccg
      601 gagcaggata cggacctcga ggtcggcatc gggcgagcgc cgcgcccacc aataccccgc
      661 gtcctcgttc cggcccgtca ccgggaagcc gctcaggagc gtgccgatgg cctcgagagc
      721 cgacgcgcgc tccccgaact cgtcgaggtc gccgctgtcc aggagccggt cagcgcgccc
      781 gaccaggcgc catacgattc ggtagctcat ctcacgcctc ctgagacagc tgccccgcac
      841 cagagttgtt ttgccgcact ctccacgaca ggtttgtagt acgcaagagg tagccccaac
      901 acgaatgttc cgtcccatgc ccctgaaagc cgtgctttgc gacctcgacg gcaccctcgt
      961 cgacagcgcc gaggatatcc gcgccgccct gaacgagctt ctggccgagc ttcgcctcga
     1021 cgctgtcgga cgggaggagg tccagggcat gatcggcgat ggcgtgggga tgctgatcga
     1081 acgggcgctt gccgcgcggg gcggcgatcc ggccgaggcg ccccatctcg tgccgcggtt
     1141 tctcgccctc tacgagccca acgcggcgcg ctcgacccgg ccgtacaccg gcgtggccga
     1201 gaccttgagg gccttgaagg cccgcggcct gcgcttagcc gtcgtcacca acaagcccga
     1261 gaccgcgacg cgcgagatcc tcgccagcct cgatcttgct ccgctcgtcg acgtggtggt
     1321 cgggggcgac acagcaccgg agcgcaagcc gcatcccgcg ccggtgctcc tggctctcga
     1381 gcggctcctc gtcgcgccgg acgaggccgt catggtgggc gacaaccatc atgacgtggc
     1441 ggcggcgcgc gcggcggggg tgcgggcgat cgcggtgacg tacgggtaca gccatgtgcc
     1501 gcacgccgag ctcggcgccg accggctgat tgcgaccttc ccggagttgc tggccgtcct
     1561 cgagttgccc gcgtgagccg ctcaagccat cggcgccgtc gcctcggcga gccaggcgcg
     1621 ggcttcggcc ggcatctgcg gctcgatgat cgcgcgaacc ttggcgtggt aggcgtcgag
     1681 ccaggcgatc tccttcggct cgaggagcgc aacgtcgatc agccggccgt ccatgggcgc
     1741 gaaggtgatc gtctcgaagg accggaagcc ggcgagatcc ggatggtcgc ggacgagcac
     1801 caggttctcg gtgcggatgc cgtaggcgcc cgtcttgtag agcccgggct cgttcgagat
     1861 gagcatgcct tcctcgagca cggtcgcgtc gcccaccgca agcctctgcg gcccctcatg
     1921 aaccccgagg taggcgccga cgccgtggcc ggtgccgtgg tcgtagtcga gcccggcggc
     1981 ccagaggtgc tggcgcgcaa aagtatcgac ctggccgccc acggcgcctt gggggaaaat
     2041 cgcgcgggcg accgcgatgt gggccttcag cacgagcgtg tagtcgcgcc gcgccccggc
     2101 gggcggctcg ccgatggcga gcgtgcgcgt gatgtcggtc gtgccgtcga ggtactgggc
     2161 gcccgagtcg acgaggagca gctcgcccgc gccgatgcgc cggttggtcg aggcttgggg
     2221 gcggtagtgc acgatggcgc cgttcggccc cgagcccgcg atggtctcga agctggtgcc
     2281 ccggtagcgc gcatcgcggg cccggaagcc atcgagctcg gcgacggcgt caagctccgt
     2341 gacggtgcgg gccggcgccg tctcgccgac ccacttgaga aagagcgcga ccgccacggc
     2401 gtcgcgctcg tgcgccgcgc ggatcccggc gatctcgacc gggttcttgc gcgccttgcg
     2461 ggcgagcgtc gggtccgtcc cggcgacgat gcgcgcccct gcgctcacaa gtgtgtcgcg
     2521 cacgaacgcg ttcgtccggt cagggtcgac cagaacgccc gcagcctcgg cgccaagctc
     2581 agccagcgct gccggaaact cggagacgtc ccgcgcaacg gtgcg
//
LOCUS       DASQWN010000194         2123 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1023944, whole genome shotgun sequence.
ACCESSION   DASQWN010000194 DASQWN010000000
VERSION     DASQWN010000194.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2123)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2123)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2123
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1023944"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            257..898
                     /locus_tag="VE686_03640"
     CDS             257..898
                     /locus_tag="VE686_03640"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY83577.1"
                     /translation="MALVLALPAQSRAHRRAAVLAALLAVAVAYLAAPWLMARLVYAP
                     RAERLVAAIRTDPRIVDAVVAQNALLAAKTPAWAIEQDRIWGEEKRAGGGPFLDAMLA
                     RPASQRLRELVAESGGVARHVIVMDASGRIAAVPLPAFNFWQFPKPKFQKTFPLGPGA
                     RHVNVLEWGHDRSFVACWLSETLVDPATGTPIGAFGIELDHAYVGDALCRATP"
     gene            1028..>2123
                     /locus_tag="VE686_03645"
     CDS             1028..>2123
                     /locus_tag="VE686_03645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012332072.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="proline dehydrogenase family protein"
                     /protein_id="HYY83578.1"
                     /translation="MAAALPIFGAPYAEDDVVLARRLMAGAALGPERERRVDATARPL
                     VEAIRSPGGGLGGVEDMLREYALSTKEGLALMVLAEALLRVPDAATADRLIEDKLGQG
                     DFAHHEPKSDAFLVNASAWALGITARIVHPGETPVGILAGLAKRLGLPAVRAATRQAM
                     RVMANHFVLGQTIEDALERARSGAGRLYRYSFDMLGEGARTAEDAERYFASYAAAITA
                     IGGSGGNEPLPNRPGISVKLSALHPRYEAVSRERVMRELVPRVLDLARAAKADELAFT
                     IDAEEADRLELSLEVIGAVLADPSLAGWDGFGLAVQAYQKRAPAVIDHVADLAQGLGR
                     RVMVRLVKGAYWDTEVKRAQERGLDDYPVFT"
BASE COUNT          272 a          766 c          750 g          335 t
ORIGIN      
        1 cggggcgctc cggctcggcc gcggcccagc ggtcgcacac gtcgacgccg atgttgtagc
       61 gctccgggat gtcccagcgg aacgcggcga cgaggcggtc gtagtctcgg atgtccggca
      121 gcatgacgct cagtcgctag catcgaagcg ggggtcagga ccagcgggtg cgcggcgcca
      181 tccccttgcg gcaggcaggt tggcgttcac ccaatcggaa cgcttgcggc gctaggttgc
      241 ggcattggag gtcccgatgg ccctcgtgct tgccttgccg gctcagagcc gcgcccaccg
      301 ccgtgccgcg gtactcgctg cgttgctggc ggtcgccgtc gcgtacctcg cggcaccctg
      361 gctcatggcg cgcctcgtct atgcgccccg cgccgagcgg ctcgtcgcgg cgatccgcac
      421 cgatccccgc attgtcgacg ccgtcgtggc gcagaatgcg ctccttgcag ccaagacgcc
      481 tgcctgggcg atcgagcagg accgcatctg gggcgaggag aagcgcgccg gcggcggccc
      541 tttcctcgac gccatgctgg cgcgcccggc ctcgcagcgc ctgcgggagc tcgttgcgga
      601 gagcgggggc gtcgcgcgtc acgtcatcgt catggacgcg tcaggccgca tcgccgccgt
      661 gccgctgccg gcgttcaatt tctggcagtt ccccaaaccg aaattccaga agacgtttcc
      721 gctcggtccc ggcgcgcggc atgtgaacgt cctcgaatgg ggccacgacc gcagcttcgt
      781 cgcatgctgg ctctcggaga ccctcgtcga ccccgcgacc ggcacgccta tcggcgcctt
      841 cgggatcgag ctcgatcacg cctatgtggg cgacgccctc tgccgcgcga cgccgtaggg
      901 ccggcgccgc ttctccctct tctcgcgggg agggatgacg cccggccgcc tgtgccatac
      961 tgggggcgtc gcggttgtgg gtgcccgcct gggtgggcat gacacgtcgg aagtggtctg
     1021 gaccgccatg gcagctgccc tcccgatctt cggcgctccg tacgcagagg acgacgttgt
     1081 cctggcgcgt cggctcatgg ctggcgcagc actcggccct gagcgcgagc gccgggtcga
     1141 cgcgaccgcc agacccctcg tcgaggccat ccggtcaccg ggcggcgggc tcggcggcgt
     1201 cgaggacatg cttcgcgagt acgcgctctc caccaaggag ggcctcgcgc tcatggtgct
     1261 ggccgaggcg ctgttgcggg tgcccgatgc ggcgaccgcg gaccgcctga tcgaggacaa
     1321 gcttgggcag ggcgacttcg cccaccacga gccgaagtcg gacgccttcc tcgtcaacgc
     1381 gtcggcgtgg gcgctcggta tcacggcccg tatcgtccac ccgggcgaga cgcccgtcgg
     1441 catcctcgcg ggccttgcga aacgcctcgg gctgccggcg gtccgcgccg cgacgcggca
     1501 ggccatgcgc gtcatggcga accacttcgt cctcgggcag accatcgagg acgccctcga
     1561 gcgcgcccgc tcgggcgcgg gccggctcta ccgctattca ttcgacatgc ttggggaggg
     1621 cgcccgtacg gcggaggacg cggagcgcta tttcgcctct tacgccgcgg cgatcacggc
     1681 catcggaggt tccggcggca acgagcccct gccgaatcgg ccggggatct cggtcaagct
     1741 ctcggccctg catccccggt acgaggcggt gagccgcgag cgcgtcatgc gcgagctcgt
     1801 gccgcgcgtg ctcgatctcg cccgggccgc gaaggcggac gagcttgcct tcaccatcga
     1861 cgccgaggag gccgaccggc tcgagctctc gctcgaggtg atcggggccg tcctcgccga
     1921 tccctcgctc gccggctggg acgggttcgg tctcgccgtc caggcctacc aaaagcgcgc
     1981 gcctgccgtc atcgatcacg tcgccgacct cgcgcagggt ctcggacggc gcgtcatggt
     2041 gcggctcgtc aagggcgcct actgggacac cgaggtgaag cgcgcgcagg agcgcggcct
     2101 cgacgactat ccggtgttca ccc
//
LOCUS       DASQWN010000195         2831 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1421668, whole genome shotgun sequence.
ACCESSION   DASQWN010000195 DASQWN010000000
VERSION     DASQWN010000195.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2831)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2831)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2831
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1421668"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..451)
                     /locus_tag="VE686_03650"
     CDS             complement(<1..451)
                     /locus_tag="VE686_03650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020090761.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LON peptidase substrate-binding
                     domain-containing protein"
                     /protein_id="HYY83579.1"
                     /translation="MTSTKSRQPIVPGSSGTFAVLPLRDIVVFPHMIVPLFVGREKSI
                     RALEEAVRTDRHILLATQINAGDDDPATDAIYKIGTLASVLQLLKLPDGTVKVLVEGA
                     SRAQVKHYTRTDEFYEAEAEVLNDSLGDQIEAEALARSVVSEFENYVK"
     gene            complement(677..1942)
                     /gene="clpX"
                     /locus_tag="VE686_03655"
     CDS             complement(677..1942)
                     /gene="clpX"
                     /locus_tag="VE686_03655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008547851.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0046983 - protein dimerization activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp protease ATP-binding subunit
                     ClpX"
                     /protein_id="HYY83580.1"
                     /translation="MSKAGGNDSKSTLYCSFCGKSQHEVRKLIAGPTVFICDECVELC
                     MDIIREESKSSLVKSRDGVPTPKEIRRVLDDYVIGQDHAKKVLSVAVHNHYKRLAHAT
                     KHNDVELAKSNILLIGPTGSGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENI
                     ILKLLQASDYNVERAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKIMEGTV
                     ASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLERIISARGKGTSIGFGAAVSAPD
                     DRRTGEVFRMVEPEDLLKFGLIPEFVGRLPVIATLEDLDELALKRILQEPKNALVKQY
                     QRLFEMENVELTFQEEALGMIARKAIERKTGARGLRSIMEGILLETMYDLPGLDSVEQ
                     VVIGAEVVEGKAKPLFIHGDRAEAASASA"
     gene            complement(2166..2798)
                     /locus_tag="VE686_03660"
     CDS             complement(2166..2798)
                     /locus_tag="VE686_03660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013167018.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004176 - ATP-dependent peptidase activity
                     [Evidence IEA];
                     GO_function: GO:0004252 - serine-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp protease proteolytic subunit"
                     /protein_id="HYY83581.1"
                     /translation="MADYFEQYMNNLVPMVVEQTNRGERAYDIYSRLLKERIIFLVGP
                     VHDAVASLICAQLLFLESENPTKDIAFYINSPGGVVTSGLSIYDTMQFIRCPVATLCV
                     GQAASMGSLLLSAGEKGHRFALSNARIMVHQPSGGFQGQATDILIHAREIEALKRRLN
                     EIYVKHTGRDLASVELALERDNFMTAEAAREFGIIDEVLVKRPEPGGIPT"
BASE COUNT          474 a          927 c          919 g          511 t
ORIGIN      
        1 gcttcacgta gttctcgaac tcggacacca ccgagcgggc gagcgcctcc gcctcgatct
       61 ggtcgccgag cgaatcgttc agaacctcgg cttccgcctc gtagaactcg tcggtgcggg
      121 tatagtgctt cacctgcgcg cggctcgcgc cctcgaccag caccttcacg gtgccgtcgg
      181 gcagcttcag gagctggagc acggaggcga gagtgccgat cttgtagatt gcatcggtcg
      241 ccggatcgtc gtcgcccgcg ttgatctggg tggcgagcag gatatggcga tcggtgcgga
      301 ccgcctcctc gagggcgcgg atcgacttct cgcggcccac gaacaggggc acgatcatgt
      361 gcgggaagac gacgatgtcg cgcaacggga ggacagcaaa cgtgccgctc gaacccggca
      421 cgatcggctg gcgtgacttc gtggatgtca tttctggagg tcctttcggc atcgtccgcg
      481 gaagctctcg gatgagccgc cccgcggccg cgtaaccgtg gcgctcgggc ctgggtcgca
      541 ggctggccac ggtgcaggaa tccgcacctc gtgagcatga gcgtgcgttg ctcctgcgtc
      601 cacggaaatg gcgctcggaa cgagagtttt caagcgcgca gtcgcctgcg cgctttgccg
      661 caagagcgga cttcggtcag gcactggcgc tcgccgcctc ggcgcggtcg ccgtggatga
      721 acagcggctt cgccttgccc tctacgacct cggcgccgat caccacctgc tccaccgaat
      781 cgaggccggg caggtcgtac atggtctcga gcaggatgcc ctccatgatg gagcgcaggc
      841 cgcgcgcgcc ggtcttccgc tcgatcgcct tgcgggcgat catgccgagc gcctcttcct
      901 ggaacgtgag ctcgacgttc tccatctcga agaggcgctg gtactgcttc acgagcgcgt
      961 tcttgggctc ctgtagaatg cgcttcagcg ccagctcgtc gaggtcctcg agcgtggcga
     1021 tgacgggcag acggcccacg aactcgggga tgaggccgaa cttgagaagg tcctcgggct
     1081 cgaccatccg gaacacctcg cccgtgcgcc ggtcgtccgg cgccgagacg gccgcaccga
     1141 agccgatcga ggtccccttg ccccgcgccg agatgatgcg ctcaaggccc gcgaaggcgc
     1201 cgccgcagat gaacaggatg ttcgtcgtgt cgacctgcag gaactcctgc tgcgggtgct
     1261 tgcgcccccc ttgcggcggc accgacgcga cggtgccctc catgatcttc aggagcgcct
     1321 gctgcacacc ctcgcccgag acgtcgcggg tgatcgaggg attgtccgac ttgcgcgaga
     1381 tcttgtcgat ctcgtcgatg tagacgatgc cccgctgcgc ccgctcgacg ttgtagtccg
     1441 aggcctggag cagcttgagg atgatgttct cgacatcctc gccgacgtag ccggcctccg
     1501 tcagcgtcgt ggcgtccgcc atggtgaagg gcacgtcgag gatgcgggcg agcgtctgcg
     1561 caagcagcgt cttgcccgac ccggtcggac cgatcagcag gatgttggat ttcgcgagct
     1621 cgacatcgtt gtgcttggtc gcgtgcgcga ggcgcttgta gtgattgtgg acggcgaccg
     1681 acaggacctt cttggcgtga tcctggccga tgacgtagtc gtccagaacc cggcggatct
     1741 ccttcggggt cggaacgccg tcgcgcgact tcacgagcga ggacttcgat tcctcgcgga
     1801 tgatgtccat gcacagctcg acgcactcgt cgcagatgaa caccgtcggg cccgcgatga
     1861 gcttgcgaac ctcgtgctgg ctcttgccgc agaaggagca gtacagcgtg ctcttcgagt
     1921 cgttgccgcc agccttgctc ataatctcgg gtctccagtc agagcgcggg ccgggcaaga
     1981 gcccgcgccg aatcgataca tactaggggc cccgggctaa gaaaccgtag cctcgaaacc
     2041 cgacgcaccg gcttcaccgg gccgccgtcc gcgaacccgg aaacgcaacc acccgcaagg
     2101 gtgcgggatc gataacaacg atccgagagg ccaaaaggac gcacccgagg ccccgatagg
     2161 ccacctcagg tcgggattcc gcccggctcc ggccgcttga ccagcacctc gtcgatgatt
     2221 ccgaactccc gcgcggcttc cgccgtcatg aagttgtcgc gctcgagggc cagctcgacg
     2281 ctcgctaggt cgcggcccgt gtgcttgacg tagatctcgt tcaggcgccg cttcagtgcc
     2341 tcgatctcgc gggcatggat caggatgtcg gtggcctgtc cctggaaccc cccggagggc
     2401 tggtggacca tgatccgggc attcgacagg gcgaagcggt gccccttctc gccagccgag
     2461 agcaggagcg agcccatcga cgcggcctgg ccgacgcaca gggtcgccac cgggcagcgg
     2521 atgaactgca tcgtgtcgta gatcgacagc cccgaggtca cgaccccacc cggcgagttg
     2581 atgtagaacg cgatgtcctt cgtcgggttt tccgattcga ggaagagaag ctgcgcgcag
     2641 atcaggctcg ccaccgcatc gtgcaccggg ccgaccagaa agatgattcg ctcctttaac
     2701 aaacgcgaat agatgtcgta ggcacgttct ccgcgattcg tctgctcgac caccatcggg
     2761 acgaggttgt tcatgtactg ttcgaaatag tcggccatat ccttctccct cgaccgccgc
     2821 gctcggtagt g
//
LOCUS       DASQWN010000196         2555 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1422019, whole genome shotgun sequence.
ACCESSION   DASQWN010000196 DASQWN010000000
VERSION     DASQWN010000196.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2555)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2555)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2555
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1422019"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            80..862
                     /locus_tag="VE686_03665"
     CDS             80..862
                     /locus_tag="VE686_03665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015928223.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016765 - transferase activity,
                     transferring alkyl or aryl (other than methyl) groups
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="isoprenyl transferase"
                     /protein_id="HYY83582.1"
                     /translation="MANPRMAGDISTTAASLDTATGSESGPAHVAIIMDGNGRWAARR
                     GLPRVEGHRRGVEAVRRAVRSAMDLRISYLTVYSFSSENWRRPPEEVSDLMGLLKRFI
                     RNDLADLHARNVRVRIIGERQDLSPDLRSLLTEAEELTKGNHGLTLVVAFNYGGRQEI
                     ARAARALARRVKDGLLDPEAINMATLERELDTRGIPDPDLVIRTSGEQRVSNFLTWQC
                     AYSEFVFVPEFWPDFDDATFRAAIDQYRRRERRFGGLSAQAS"
     gene            867..1727
                     /locus_tag="VE686_03670"
     CDS             867..1727
                     /locus_tag="VE686_03670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012330612.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidate cytidylyltransferase"
                     /protein_id="HYY83583.1"
                     /translation="MAHGGSPGRQAAPGGWIGSELGQRVGSSLVMAAAALLATYVGGW
                     LFAAFWLLAALAVLIEWSAITRVEPREPLRVVLGLALSLMVLALALRLPAWSVAAVAA
                     AALIAASALGRGARDRLWSGAGFLYAAVIATVPFVVRDDPRLAAVGVLWIFATVWVTD
                     VAAYFVGRAVGGPRLWPRVSPKKTWSGFLGGVAAGTAAGVVVAVGSRYGTQVPAPFWL
                     VGLISALAASVGQLGDLAESALKRTFEVKDSGHLIPGHGGLMDRLDAFWAVCALVGVV
                     LGGLRLAGRW"
     gene            1733..>2555
                     /locus_tag="VE686_03675"
     CDS             1733..>2555
                     /locus_tag="VE686_03675"
                     /EC_number="1.1.1.267"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019403661.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030554 - adenyl nucleotide binding
                     [Evidence IEA];
                     GO_function: GO:0030604 - 1-deoxy-D-xylulose-5-phosphate
                     reductoisomerase activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0019288 - isopentenyl diphosphate
                     biosynthetic process, methylerythritol 4-phosphate pathway
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="1-deoxy-D-xylulose-5-phosphate reductoisomerase"
                     /protein_id="HYY83584.1"
                     /translation="MRERVTILGATGSVGRSVADVVRQHPDRFAVEAVVGGSDAQALA
                     SIARDLGAKFAAVAAPTAGEELKGWLTGSGITSGAGPAAVLDAAQRDADIIVAAISGA
                     AGLRPTHAALKPGQRIALANKETLVCAGVLFMADARRLGVPIKPVDSEHNALAQALTA
                     GPVEDVTSAIITASGGPFRTWSRERIARATPAEASRHPTWAMGAKINIDSATLMNKGL
                     ELIEAHHLFGLSPDQLEVLVHPQSIVHGLVQWRDGAITAGLAPPDMRIPIANSLAR"
BASE COUNT          357 a          887 c          875 g          436 t
ORIGIN      
        1 cagatcaatc cattgccgag attgaccaga tcctcgccag taaggaaaag gagatcatgc
       61 aggtttagcc tcggcctgca tggcaaaccc ccgcatggcc ggcgacattt ccacgacagc
      121 tgcctcgctc gataccgcaa cagggtccga gagcggcccg gcgcatgtcg ccatcatcat
      181 ggacggcaat gggcgttggg ccgcgcgccg cgggctgccg cgggtcgaag gccatcgacg
      241 cggcgtcgag gccgtgcgtc gggccgttcg ctcggccatg gatctgcgca taagctacct
      301 caccgtctat agcttctcgt cggagaactg gcgccggcct ccggaggagg tctcggacct
      361 gatgggcctg ctcaagcgct tcatccgcaa cgacctcgcc gacctccacg cgcgcaacgt
      421 gcgcgtccgc atcatcgggg aacgccagga tctcagcccc gatctgcgct ccctgctcac
      481 cgaggcggag gaactcacca aggggaacca cgggctgacc ctcgtcgtcg ccttcaacta
      541 tggtggacgg caggagatcg cccgagcagc ccgtgcgctc gcgcgccgcg tgaaggacgg
      601 cctgctcgac cccgaggcaa tcaacatggc gacgctcgag agggagctcg acacccgcgg
      661 cattcccgac cctgacctcg tcatccgaac ctccggtgag cagcgcgtct cgaacttcct
      721 gacctggcag tgcgcgtatt cggaattcgt cttcgtcccg gagttctggc ccgatttcga
      781 cgacgcgacg ttccgggcgg cgatcgatca ataccgccgc cgcgagcgcc gtttcggcgg
      841 cctcagcgcc caggcgagct agcgtcatgg ctcacggcgg cagccccgga cggcaagccg
      901 cgcctggagg ctggatcggg tccgagctcg ggcagcgcgt cggctcgtcg ctcgtgatgg
      961 ccgccgcggc gctgcttgcg acctatgtgg gcggttggct tttcgccgct ttctggctcc
     1021 ttgcggccct cgccgtcctg atcgaatggt cggcgatcac gcgggtggag cctcgcgaac
     1081 cgctccgagt ggtgctcgga ctagccctca gcctcatggt gctcgcgctc gccttgcgcc
     1141 tcccggcctg gagcgttgcc gcggtcgcgg cggctgccct tatcgccgcc tcggcgcttg
     1201 ggcgcggagc gcgcgatcgc ctctggtccg gcgccggctt cctctatgcc gcggtgatcg
     1261 cgacagtacc cttcgtagtg cgggacgatc cgaggctcgc ggccgtcggt gtgctgtgga
     1321 tattcgcaac cgtctgggtg accgacgtcg cagcgtactt tgtcgggcgc gcagttggcg
     1381 ggcccaggct gtggccgcgc gtcagcccga agaagacctg gtcgggcttc ctcggagggg
     1441 tcgctgccgg gaccgcggcc ggggtggtcg tggccgtcgg ctcgaggtat ggcacgcagg
     1501 ttccggcgcc cttctggctg gttggtctga tttccgcgct ggcggcgagc gtcggccaac
     1561 tcggtgattt ggccgagtcg gctctcaagc ggaccttcga ggtcaaggat tccgggcacc
     1621 tgatccctgg ccatggcggg ctcatggatc ggctcgatgc gttctgggcc gtgtgcgcgc
     1681 tcgtcggcgt ggtcctcggc ggcctccgcc tcgccgggcg gtggtgaagc gcatgcgcga
     1741 acgcgtcacc atcctggggg ccacaggctc cgtcggccgc tcggtcgcgg atgtggtgcg
     1801 acagcatccc gaccgcttcg ccgtcgaggc cgtggtcggc ggcagcgacg cgcaggctct
     1861 agcgtcgatc gcgcgggacc ttggcgcaaa attcgccgcc gtcgcggcac cgaccgcggg
     1921 cgaggagctc aagggctggc tgacaggctc cggaatcacc tcgggcgccg ggccggctgc
     1981 cgtcctcgat gcggcgcagc gtgacgccga catcattgtt gcggcgatca gcggcgcggc
     2041 cggcttgcgc ccgacgcacg ccgccctcaa gccagggcag cgcattgcgc tcgcaaataa
     2101 ggagacgctc gtctgcgccg gggtcctctt catggctgac gcgcgccggc ttggagtgcc
     2161 gatcaagccg gtggattcgg agcacaacgc gctcgcgcag gcgctcacgg ccggtccggt
     2221 cgaggatgtc acctcggcga tcatcacggc gtccggcgga ccgtttcgga cttggtctcg
     2281 ggagcgcatc gcgcgcgcga cgccggccga ggcctcccgc cacccgacct gggcgatggg
     2341 cgcgaagatc aacatcgatt cggcgaccct tatgaacaaa ggcctcgaac tcatcgaggc
     2401 gcatcacctg ttcgggctct cgcccgacca gctcgaggtg ctcgtccatc cgcagtccat
     2461 cgtgcacggc ctcgtacagt ggcgggacgg ggccatcacg gccggccttg cgccgcccga
     2521 catgcgcatc cctattgcca acagcctcgc tcggc
//
LOCUS       DASQWN010000197         3344 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1025462, whole genome shotgun sequence.
ACCESSION   DASQWN010000197 DASQWN010000000
VERSION     DASQWN010000197.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 3344)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3344)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3344
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1025462"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(272..1945)
                     /locus_tag="VE686_03680"
     CDS             complement(272..1945)
                     /locus_tag="VE686_03680"
                     /inference="COORDINATES: protein motif:HMM:NF013714.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding protein"
                     /protein_id="HYY83585.1"
                     /translation="MAHRLSRKRVRDAATIESWRRYGEEVFRKAGIPREAVAGTLDRF
                     VGKIVLPGDKCYDHLRKLFNPLFQSLPSAIVMCETEIDAQMAVMFAAQSGTFLPGPGG
                     SFPAAITVRSGGHSTAGYSAGSGVLVDVSALNCVTIADDQSTVTVGCGCNFGKLIQIL
                     DAHGLHVPTGECDDVCVGGFVQGGGYGFTSGAFGMNCDNVVSFRVLLSDGSIVVANET
                     TNQDLWWALRGGTGGNFGIVLSVTYKLYPLGQIYGWALAWPLATSDNRTDAVGALMLL
                     QANYMLTAPQYLTSQVSICYQPDDPHGAGGPLTPWLLIRGTYAGPDPSTGQSVIAPLA
                     NLPGAVMQYSGLDSYGNLNDALLNFPYSIPPIPDAEGIPNEDKQARYVARALTQDEWR
                     SILDLFVEQAPNAGNLWAYMYLEVYGGAINAYPVADSAFIHRDVAFDACLDVFWAIGS
                     DPSGAEAFLANWTQLLETMWNGHIYQNYPNQNVPDYRWNYWGTALQGLIAAKAKYDSI
                     NLFTFPQMVAPYLPGEGRPEQGTPPPPFVAEALAKPIVIARPPPATVFS"
     gene            complement(2115..3089)
                     /locus_tag="VE686_03685"
     CDS             complement(2115..3089)
                     /locus_tag="VE686_03685"
                     /inference="COORDINATES: protein motif:HMM:NF015366.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tripartite tricarboxylate transporter
                     substrate-binding protein"
                     /protein_id="HYY83586.1"
                     /translation="MTITRRTALGLLAAAAALPDGAVAQGYPTRPIKIVVPYPAGGPT
                     DALARIVAQELGSALGGSAIVENAGGGAGAIGTRQVAKADPDGHTLVLSTNQTHATNY
                     VLLKDPGYEAKDFAAVAGLADLQHVLVVRNDLPAKSVRELVAHAKANPGKLNYGSTGN
                     GSASHLAMELFKVKTGTDLVHVPFRGAAPMAQELVAGRIDVAFATLPSVLGQITGGTM
                     RALALASGARAPQLPSVPLLREEGVEGGEADAWVGLWAPAATPRAVLDKLSGAVLAAL
                     KKPEVAEAATKLGMAVNLREPKAFDAFVADEITKWAEVVKAANVKIDG"
     gene            3215..>3344
                     /locus_tag="VE686_03690"
     CDS             3215..>3344
                     /locus_tag="VE686_03690"
                     /EC_number="2.6.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003598029.1"
                     /note="catalyzes the formation of oxalozcetate and
                     L-glutamate from L-aspartate and 2-oxoglutarate; Derived
                     by automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate transaminase"
                     /protein_id="HYY83587.1"
                     /translation="MGFLSDALSRVKPSATLVMTQKARDLKAQGRDVISLSVGEPDF"
BASE COUNT          516 a         1075 c         1193 g          560 t
ORIGIN      
        1 cggtcttgta gatggcctcc gcctccgagc gcagcgcggc gacctcctgg tcggagaagc
       61 agctcggcag gaagagatag ccctggtcgt cgaactcctt gagctgccgt gcatcgagct
      121 tcatggcgtt cctccgcggc cgccgccacg ggctaggcga tcgctcacgt gcttggcgat
      181 ccgctgtggc gtaacccagc ttcggccaag ggcggccgaa gcgcaactca gaggtcgggg
      241 atgcaaaggt gggccggctc gtgcctgagc gtcaggaaaa caccgtcgcc ggaggtggcc
      301 gggcgatcac gattggcttt gccagcgcct cggcgacgaa cgggggcggc ggcgtgcctt
      361 gttccggccg accttcgccg ggcaagtacg gcgcgaccat ctgcgggaac gtgaagagat
      421 tgatgctgtc gtacttggcc tttgcggcga tcagcccctg gagcgcagtg ccccagtagt
      481 tccagcgata gtcggggacg ttctggttcg ggtagttctg gtagatgtgg ccgttccaca
      541 tcgtctcgag cagttgcgtc cagttggcga ggaaggcctc cgctccgctc gggtccgaac
      601 cgatggccca gaacacgtcc aggcaggcgt cgaaagcgac gtcgcggtga atgaaggcgc
      661 tgtcggcgac ggggtaggcg ttgatcgccc cgccgtagac ctccaggtac atatacgccc
      721 acagatttcc tgcgttcggc gcctgctcga cgaagagatc caggatcgaa cgccattcgt
      781 cctgcgtcag cgcgcgggcg acgtaacgcg cctgcttgtc ctcattgggg atgccctcgg
      841 cgtcaggaat cggcgggatc gaatacggga agttgagcag ggcgtcgttc aagttgccgt
      901 agctgtcgag gcccgagtac tgcatgaccg cgcccggcag gttggcgagc ggagcgatga
      961 cgctttggcc cgtcgaaggg tcggggcccg cataggtccc gcggatgaga agccagggcg
     1021 tgagcgggcc gccggcgcca tggggatcgt cgggctggta gcagatcgag acctgcgacg
     1081 tgaggtattg cggggcggtg agcatgtagt tcgcctgcag cagcatcagc gcgcctaccg
     1141 catcggttcg gttgtcgctc gtcgcgagcg gccaagccag cgcccagccg tagatctgac
     1201 cgagcgggta gagcttgtag gtgacgctca ggacgatgcc gaaattgccg cccgtaccgc
     1261 cgcgcagagc ccaccagagg tcctggttgg tggtctcgtt cgcgacgacg atgctgccgt
     1321 ccgagaggag cacgcggaag ctgaccacgt tatcgcagtt catcccgaat gcgccggagg
     1381 tgaacccgta gccgcccccc tgcacgaagc cgcccacgca gacgtcgtcg cactcgccgg
     1441 tcggcacgtg aaggccgtgc gcgtcgagga tctggatcag cttgccgaag ttgcagccgc
     1501 atccgactgt caccgtcgac tggtcgtccg cgatcgtcac gcagttcagg gcgctgacgt
     1561 cgacgagcac accgcttccg gcggagtagc cggcagtcga atgccccccc gaccggaccg
     1621 tgatggccgc aggaaagctc cctcccggcc cgggcagaaa ggtgcccgac tgcgcagcga
     1681 acatcactgc catctgtgca tcgatctccg tctcgcacat cacgatggcg gacgggagcg
     1741 actggaacag tgggttgaag agcttgcgga ggtggtcgta gcacttgtcg cccgggagga
     1801 cgattttgcc gacgaaccgg tccagcgtgc ccgcgacggc ttcccgggga atacctgcct
     1861 ttcggaagac ctcctcgcca tacctccgcc aggactcgat ggtggcagcg tcccgcacgc
     1921 gcttgcggct gaggcgatgg gccatgttcg ctcctcggcg gacccgcccg ttgcaccggg
     1981 aagcggggac ttggctgcgc tgtgcgcagg caaggtacga acgctagcgc cggggttgtt
     2041 gctgtcaact cccatcggcg cggttgcaat ctgcgacgag gcggccgcta ttccgttttg
     2101 caggcgccgg cgcctcagcc gtcgatcttg acgtttgcgg ctttcacgac ctcggcccac
     2161 ttcgtgatct cgtcggcgac gaaggcgtcg aaggccttgg gctcgcgcag gttcacggcc
     2221 atgccgagct tggtcgcggc ctcggcgacc tcgggcttct tcaacgccgc gagcaccgcg
     2281 ccggagagct tgtcgagcac cgcgcgcggg gtcgcggcgg gagcccagag gccgacccag
     2341 gcgtccgcct cgccgccctc gacgccttcc tcccgcagga gcggaacgga cgggagctgc
     2401 ggggcgcggg cgccgctcgc cagcgccaag gcgcgcatgg tgccaccggt gatctgcccc
     2461 agcaccgagg gcagggtcgc gaaggcgacg tcgatgcgtc cagccacgag ctcctgcgcc
     2521 atgggcgcgg cgccgcggaa ggggacgtgc acgaggtcgg tcccggtctt caccttgaac
     2581 agctccatgg cgaggtgcga ggcggagccg ttgccggtcg agccgtagtt gagcttgccc
     2641 gggttcgcct tggcgtgggc cacgagctcg cgcacggact tcgccggcag gtcgttcctg
     2701 accacgagca cgtgctgcag gtcggcgagc cccgcgacgg cggcgaagtc cttggcctcg
     2761 tagcctggat ccttgagaag cacgtagttg gtggcgtgcg tctggttggt cgacagcacg
     2821 agggtgtggc cgtcggggtc ggccttggcg acctggcgcg tgccgatggc ccccgcgccg
     2881 ccgccggcgt tctcgacgat ggcgctgccg ccgagcgcgc tcccgagctc ctgggcgacg
     2941 atgcgggcaa gcgcatccgt cggcccgccc gccggatagg gcaccacgat cttgatcggg
     3001 cgcgtcggat acccctgggc aacggcgccg tcaggaaggg cggcagcggc ggcgaggagg
     3061 ccaagggcgg tgcggcgggt aatcgtcatg tgatctcaca aaccttgatg ggcgccattc
     3121 cgggtttcgt cttgcccgcg cgaggcggcg cgactagggt ccggcgcgcc cgcggcgagt
     3181 gggccttcta gcatcccgac cggagagttt tccaatgggc tttctgtccg acgccctgtc
     3241 ccgcgtgaag ccgtctgcga cgctcgtgat gacgcagaag gcgcgggatc tgaaagcgca
     3301 ggggcgcgac gtgatcagcc tctcggtcgg cgagccggat ttcg
//
LOCUS       DASQWN010000198         4259 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1422803, whole genome shotgun sequence.
ACCESSION   DASQWN010000198 DASQWN010000000
VERSION     DASQWN010000198.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 4259)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4259)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4259
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1422803"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1505)
                     /locus_tag="VE686_03695"
     CDS             complement(<1..1505)
                     /locus_tag="VE686_03695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012253553.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PAS domain-containing protein"
                     /protein_id="HYY83588.1"
                     /translation="MRTVLFALTCLIAALVAVAAPSPAAAVEAVRVNREAAAIDLTPA
                     IERYRSDGDEIRISTAPGRDGIVRRIAVKARETGTRPDWIVFALTNDTDEQIDRLLVA
                     PHFRLAGSGVIWPDLGSSRIAAITASQGIRPEREESPDADVFLITLDPGTTVTFVAEL
                     RSANVPQVYLWDSDSYKERLNGLTLYKGIIIGIAGLLALFLTIVFVVKGAVIFPAAAA
                     LAWAVLAYACIDFGFFQRIFPITEAVERIYRAGAEAVLAATLLVFLFAYLNLNRWHVR
                     YSHVAAFWFVFLAALVGLALVDPPVASGIARISIAAVAGVGFVLVMHLAMHGFDRAVM
                     LIPTWLLLVAWVAAAGFTVMGQLSSDLASPALIGGLVLIVMLIGFTVLQHAFAGGAFA
                     HGVVSDTERRALALSGSGDIVFDWDVVADKVFVSPEVEQQLGLKRGTLESSASEWLDV
                     IHPFDRDRFRTALDAVLEQRRGRVVQDFRLRSAGGTYHWFRLKARPVVGTDG"
     gene            complement(1696..3000)
                     /locus_tag="VE686_03700"
     CDS             complement(1696..3000)
                     /locus_tag="VE686_03700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012254526.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pitrilysin family protein"
                     /protein_id="HYY83589.1"
                     /translation="MNHHFERGDAPQVEITVLGNGLTVATERMPHIATATLGVWVGTG
                     SRHEEPDEHGLSHLIEHMAFKGTARRSARRIAEDIENVGGDINAATSVEYTSYTARVL
                     GENVDVALDVLGDILTNSVFDDAELAREKDVILQEYAAVEDTPDDVVYDAFLETAFPG
                     QALGRPILGRPETIERFDGSVIRAFMAREYRPSRMVLAAAGAVDHAAIVDAAERFFGA
                     MPPGEANGVAPARYVGGERRMKRKLEQANLILGLPGVSFKAPTYYATHMFAHVLGGGL
                     TSRLWHEVRETRGLAYSIDAFHWPFSDCGVFGIGAGTRGSDLPQLLAVTSECAERTAR
                     EVEAVEIARAKAQLKVALLAALEAPGGRIERIARQLLAWGRVIPSEEIVGKVDAVTID
                     EVRAAGRAVLSGPPTLAAIGPIRKLPELQVIAGSLQAARAAI"
     gene            complement(2997..>4259)
                     /gene="thrC"
                     /locus_tag="VE686_03705"
     CDS             complement(2997..>4259)
                     /gene="thrC"
                     /locus_tag="VE686_03705"
                     /EC_number="4.2.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012332209.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004795 - threonine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0009088 - threonine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="threonine synthase"
                     /protein_id="HYY83590.1"
                     /translation="AEVAKTVLGALIDGDIPTSDLGRMIDASYAEFRHPAVCPLVQLD
                     DNLFALELFHGPTLAFKDVAMQLLGRLMDHVLTARRQRATIVGATSGDTGSAAAEAFK
                     GLDQVDVFILYPHGRVSDVQRRQMTGIDAPNVHAIALEGTFDDCQAIVKALFNHARFR
                     DDINLSGVNSINWARVAAQTVYYFTAAVALGAPHRPVSFSVPTGNFGDILAGYAAKRM
                     GLPVARLMIGTNANDILARTLATGIYELRGVTPTASPSMDIQVSSNFERLLFEAYDHD
                     GGAVRRLTAALAQGGAFTIDAEPLARIRAEFSAQAVDEAAVAEEMAATHDEAAYTLDP
                     HSAVGTRAGRALLSTDPRTPVVALATAHPSKFPDAVERATGLRPALPPHLADLLERPE
                     RFTVLANDQGAVERFIRERARVARGAAA"
BASE COUNT          691 a         1402 c         1539 g          627 t
ORIGIN      
        1 ccatcggtcc cgaccaccgg tcgcgccttg aggcggaacc agtggtacgt gccgccggcg
       61 gagcgcaggc ggaagtcctg cacgacacgg ccgcggcgct gctccagcac tgcgtcgagg
      121 gcggtgcgga aacggtcgcg atcgaaggga tgtatgacgt cgagccactc ggaggcagag
      181 ctctcgagcg tgccgcgctt cagcccaagc tgctgctcga cctcgggact gacgaacacc
      241 ttgtcggcga cgacgtccca atcgaacacg atgtcgcccg accccgagag ggcgagcgca
      301 cgacgctcgg tgtcgcttac gactccatgc gcgaaggcgc cacccgcgaa ggcatgctgc
      361 agcaccgtga agccgatcag catgacgatc agtacgagcc cgccgatcag cgctggcgag
      421 gcaagatcgc ttgacagctg gcccatgacg gtgaacccgg cggccgcgac ccaggcgacg
      481 agcaggagcc atgtcgggat cagcatgacg gcgcggtcga agccgtgcat cgcgagatgc
      541 atgacgagca cgaacccgac gccggcgacg gccgcgatcg agattcgggc gatacccgac
      601 gccaccggcg gatcaacgag cgcgagcccg accagggccg ccaggaagac gaaccagaac
      661 gccgcgacgt ggctgtaccg cacgtgccag cggttgaggt tcaggtacgc gaacaggaac
      721 acgaggaggg tcgcggcgag cactgcctcg gcccctgcgc ggtagatccg ctcgactgcc
      781 tcggtgatgg ggaaaatccg ctggaagaac ccgaaatcga tgcacgcgta ggcgagcacg
      841 gcccaggcga gcgccgccgc ggcggggaag atgaccgcgc ctttgaccac gaagacgatg
      901 gtcaggaaca acgcgagcag gccggcgatg ccgatgatga tgcccttgta gagcgtcagc
      961 ccgttcagcc gttccttgta gctgtccgaa tcccacaggt agacttgtgg cacgttcgcc
     1021 gatcgcaact cggcgacgaa tgtgaccgtc gtcccgggat caagggtgat aaggaagacg
     1081 tcggcatcgg ggctctcctc gcgctcgggc cggatgcctt ggctcgccgt gatcgcggcg
     1141 atgcgggacg agccgaggtc gggccagatg acgcccgatc cggcgagccg gaagtggggt
     1201 gcgaccagca ggcggtcgat ctgctcgtcg gtatcgttgg tgagcgcaaa gacgatccag
     1261 tccggccgcg tgccggtctc gcgcgccttg acggcgatcc ggcgcacgat gccgtcgcgc
     1321 cccggagcgg tcgagatgcg aatctcgtct ccgtctgacc ggtagcgctc gatcgccggc
     1381 gtgagatcga tcgcggcggc ctcgcggttg acgcgtaccg cttcgacggc ggcggccggc
     1441 gagggcgccg caacggcaac cagcgcagcg atcaagcacg tcagggcgaa gaggacggtc
     1501 cgcaacggca gggtctctcg tccggaactc gggctggcag tgggcaagtg gtatcggccg
     1561 tcaagcgtga gggcaaggcg aaccgggcgg acacacgtgg cgcccgccaa gttcctgggg
     1621 acgcggcgtt cttcggaatc gcaccggacc tggacgtcga agcgcccgct ggcgggcaat
     1681 ggccctcgtt tacggctaaa tcgcggctcg ggcggcctgg agcgagcccg caatgacctg
     1741 aagctccggc agcttgcgga tcggtccgat cgcagcgagc gtcggcggcc cggagagaac
     1801 cgcgcgcccc gccgcccgca cctcgtcgat ggtcacagcg tcgactttgc cgacgatctc
     1861 ctcgctcggg atcacccggc cccaagccag cagttggcgt gcgatgcgct cgatgcggcc
     1921 gccgggggcc tcgagggccg caagcagcgc gactttgagc tgcgccttgg cgcgggcgat
     1981 ctcgacggcc tcgacctcgc gggcggtacg ctcggcgcac tcgcttgtca cggcgagcaa
     2041 ctgcggcagg tcggagccgc gcgtcccggc gccgatgccg aaaaccccgc aatcggagaa
     2101 cggccagtgg aaggcatcga tcgagtaggc aagtccgcgg gtctcgcgca cctcgtgcca
     2161 aaggcgcgag gtcagcccgc ccccgagcac gtgcgcgaac atatgcgtcg cgtagtaggt
     2221 cggtgccttg aacgacaccc ctggcaggcc aaggatgagg ttggcctgtt cgagcttgcg
     2281 tttcatgcgc cgctcgccgc cgacgtagcg ggccggggcg actccgttcg cctcgcccgg
     2341 cggcatggcg ccgaagaagc gctcggcggc gtccacgatg gccgcgtggt cgacggcgcc
     2401 ggccgcggcc agcaccatcc ggctgggccg gtactcgcgc gccatgaagg cgcggatgac
     2461 gctcccgtcg aagcgctcga tggtttcggg ccggccaagg atggggcgtc cgagcgcctg
     2521 tcccgggaag gcggtctcca ggaaggcgtc atagaccacg tcgtcgggcg tgtcctcgac
     2581 ggcggcgtat tcctgcagga tgacgtcctt ctcgcgcgcg agctcggcgt catcaaagac
     2641 cgagttcgtg aggatatcgc cgagcacgtc gagcgcgaca tcgacgttct caccgagcac
     2701 gcgggcggtg tagctcgtgt attcgacgct cgtcgccgcg ttgatgtcgc cgcctacatt
     2761 ctcgatgtcc tcggcgatgc gccgcgccga gcgccgcgcg gtccccttga aggccatgtg
     2821 ctcgatgagg tgcgacagcc cgtgctcgtc gggttcctcg tggcgggagc cggtgccgac
     2881 ccacacgccg agcgtcgcgg tcgcgatgtg cggcatgcgc tcggttgcga cggtcaggcc
     2941 gttcccgagg acggtgatct ccacttgagg cgcgtcgccc cgctcgaagt gatggttcat
     3001 gcggcggccc ctcgcgccac ccgggcgcgc tcacggatga agcgctccac cgcgccctga
     3061 tcgttcgcca ggaccgtgaa gcgctcgggc ctttcgagca ggtcggcgag gtgtggcggc
     3121 agggcagggc gcaggccagt cgcgcgctcg accgcgtccg ggaactttga cgggtgcgcg
     3181 gtcgcgagcg ccacgacggg tgtgcgggga tccgtgctca ggagggcgcg ccccgctcgg
     3241 gtgccgaccg cgctgtgcgg gtcgagggtg tacgccgcct cgtcgtgtgt cgcggccatc
     3301 tcctccgcaa ccgccgcctc gtcgacggct tgcgccgaga actcggcacg gatgcgcgcg
     3361 agcggctccg cgtcgatcgt gaacgcgcca ccctgggcga gtgccgccgt gaggcggcgc
     3421 accgcgccgc cgtcgtggtc gtaggcctcg aacaggagac gctcgaagtt cgacgacacc
     3481 tggatgtcca tggagggcga ggcggtcggg gtgaccccac gcagctcgta tatccccgtc
     3541 gcgagcgtgc gtgcgaggat gtcgttggcg ttcgtgccga tcatcagacg cgcgacgggg
     3601 aggcccatgc gcttcgccgc gtaacccgcc aggatgtcgc cgaagttgcc ggttggaacc
     3661 gagaaggaca ccggccgatg cggcgccccg agcgccacgg cggccgtgaa gtagtagacc
     3721 gtctgggcgg cgacccgggc ccagttgatc gagttcacgc cagaaaggtt gatgtcgtcg
     3781 cgaaagcgcg cgtggttgaa gagcgccttc acgatcgcct ggcagtcgtc gaacgtgccc
     3841 tcgagcgcga tcgcgtgcac gttcggtgcg tcgatgccgg tcatctggcg tcgctgcacg
     3901 tccgagacgc gtccgtgcgg gtagaggatg aagacgtcga cctggtcgag ccccttgaac
     3961 gcttcggccg ccgcgctgcc ggtgtcaccc gaggtcgcac cgacgatggt ggcgcgctgc
     4021 cgccgagcgg tgagcacgtg gtccatgagc cgcccgagca gctgcatggc gacatccttg
     4081 aaagcgagcg tcggcccgtg gaaaagctcg agggcgaaga ggttgtcgtc gagctgcacc
     4141 agcgggcaca cggccgggtg tcggaactcc gcgtacgagg cgtctatcat gcggccgagg
     4201 tcggacgtcg gaatgtcccc gtctatgagg gcgcccagga cagtcttggc gacctcggc
//
LOCUS       DASQWN010000199         2158 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_314442, whole genome shotgun sequence.
ACCESSION   DASQWN010000199 DASQWN010000000
VERSION     DASQWN010000199.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2158)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2158)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2158
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_314442"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..783)
                     /gene="arsM"
                     /locus_tag="VE686_03710"
     CDS             complement(<1..783)
                     /gene="arsM"
                     /locus_tag="VE686_03710"
                     /inference="COORDINATES: protein motif:HMM:NF008823.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arsenite methyltransferase"
                     /protein_id="HYY83591.1"
                     /translation="MAELTDTDLREKVRERYAAAATAVADNTSSGCCGAPAAIDGCGP
                     DISSRDKQGKEVFGAILYDGERDAVPQAAVEASLGCGVPTAVADLHEGETVLDLGSGA
                     GADVLISARRVGATGAAIGLDMTDEMLELARANAAEAGIDNVEFVKGYIEDIPLADGS
                     VDVVISNCVINLAGDKPKVLRDAARVLRPGGRFAVSDVIADPDMDAQTRADTEQWTGC
                     IAGALTRDEFAIALRKAGLDDIEITETHRVHEHAGAAIIRARK"
     gene            895..1236
                     /locus_tag="VE686_03715"
     CDS             895..1236
                     /locus_tag="VE686_03715"
                     /inference="COORDINATES: protein motif:HMM:NF033788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metalloregulator ArsR/SmtB family transcription
                     factor"
                     /protein_id="HYY83592.1"
                     /translation="MQLEPKQKRPAGQPCCEPVVYPDVERQQAERMAVIAKAIADPVR
                     LQLVDVLRKHAGKVCVCELVPLFDLSQPTVSHHLKVLRDAGIVDSERQGLWAYYYVVP
                     DALDELAAWLS"
     gene            1335..1952
                     /locus_tag="VE686_03720"
     CDS             1335..1952
                     /locus_tag="VE686_03720"
                     /EC_number="1.20.4.4"
                     /inference="COORDINATES: protein motif:HMM:NF013607.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030612 - arsenate reductase (thioredoxin)
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="arsenate reductase ArsC"
                     /protein_id="HYY83593.1"
                     /translation="MKYVLFVCTHNAGRSQMAQALFERHAPPDIRAESAGQEPAEEVW
                     PEVVEAMREIGIDLSGRRPKKLTVEMQLHADWAITLACGARCPYVPSTVEDWDIPDPA
                     GKPLEEIRAIRDAVEAHVKDLVESRLDAIRADRTSHEVRLQRLLPDLVKEFAGLRSDG
                     EIRACADAILCEYDEVPVRSFVMTIAHRRTRECLAAETCEPLVTA"
     gene            1928..>2158
                     /locus_tag="VE686_03725"
     CDS             1928..>2158
                     /locus_tag="VE686_03725"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY83594.1"
                     /translation="MRAAGHRLTTRAARSNGRVEQARPGLGRRTAAEGLAAFALVFAG
                     CGAIVANVQYDGAVGAVGPAVAIAIGGTVGLDA"
BASE COUNT          320 a          746 c          744 g          348 t
ORIGIN      
        1 cttgcgggcg cggatgatcg ccgcgccggc gtgctcgtgg acgcggtggg tttcggtgat
       61 ctcgatgtcg tcgaggccgg ccttgcgcag ggcgatcgcg aactcgtcgc gtgttagggc
      121 gccggcgatg cagccggtcc attgctcggt gtcggcgcgc gtctgcgcgt ccatgtccgg
      181 gtcggcgatc acgtcggaga ccgcgaagcg gccgccgggc cgcagcacgc gcgcagcgtc
      241 gcgcagcacc ttcggcttgt cgccggcgag gttgatgacg cagttcgaga tcacgacgtc
      301 gacggagccg tccgcgagcg ggatgtcctc gatgtagccc ttgacgaact cgacgttgtc
      361 gatgcccgcc tctgccgcgt tcgctcgcgc gagctcgagc atctcgtcgg tcatgtcgag
      421 gccgatcgcc gcgccggtcg cgccgacgcg ccgcgcggag atgaggacgt cagcgcccgc
      481 gcctgagccg agatcgagca cggtctcgcc ctcatgcagg tccgcgacgg ccgtgggaac
      541 gccgcaacca agcgacgcct cgaccgccgc ctgcgggacc gcgtcgcgct ctccgtcgta
      601 caggatcgcg ccgaagacct ccttgccctg cttgtctctc gatgagatgt cggggccgca
      661 gccatcgatc gccgccggcg ccccgcagca gccggacgac gtgttgtcgg caacagccgt
      721 cgcggcggcg gcgtagcgct cgcgcacctt ctcgcggagg tctgtgtcgg tcagctcggc
      781 catctggcga ttcctctctt catagatgca tgtcgataca gccagaggcg tactgtaacg
      841 attagatcga taaacgtcta cccagtcgct agactgcctc cggtgacgct tccgatgcaa
      901 ctggagccca agcagaagcg ccccgcaggg cagccctgct gcgagccggt cgtctatccc
      961 gacgtcgagc gccagcaggc cgagcgaatg gcggtcatcg ccaaggcgat cgcggacccg
     1021 gtgcgtctgc agctcgtcga cgtccttcgc aagcacgccg gcaaggtgtg cgtctgcgag
     1081 ctggtgccgc tgttcgacct ctcccaaccg acggtctcac accacctcaa ggtcttgcgc
     1141 gacgcgggga tcgtggactc cgagcgccag ggcctgtggg cgtactacta cgtcgtgccg
     1201 gacgccctgg acgagctcgc cgcctggctg agctagcccg cgcccgctca tcgacgtact
     1261 tctatttgca tttgtcgatg taacggcttt agcttttggg cagtggtcac gcgccgccgc
     1321 ccagggaggc acaagtgaag tacgtcctat tcgtctgcac ccacaatgcc ggccgctcgc
     1381 agatggcgca ggcgctcttc gaacggcatg ccccgccgga catccgcgcc gagtccgccg
     1441 gccaggagcc ggccgaggag gtatggcccg aagtggtcga agcaatgcgc gagatcggga
     1501 tcgacctgtc cgggcggcgc ccgaagaagc tcacggtcga gatgcagctg cacgccgact
     1561 gggcgatcac gctcgcctgc ggcgcgcggt gcccgtacgt cccctcgacc gtcgaggact
     1621 gggacatccc cgatcctgcc gggaagccgc tcgaggagat ccgggcgatt cgcgatgcgg
     1681 tcgaggcgca cgtgaaggac ctcgtcgaaa gccgcctcga cgccatcagg gccgaccgaa
     1741 cgagccacga ggtacggctc cagcggctgc tgcccgacct cgtcaaggag ttcgccgggc
     1801 tgcgctccga cggcgagatc cgcgcgtgcg cggacgccat cctgtgcgaa tacgacgagg
     1861 tgccggtgcg ctcgttcgtg atgacgatcg cccaccgccg cacgcgcgaa tgccttgcgg
     1921 ctgagacgtg cgagccgctg gtcaccgcct gacaacccgc gccgcgcgct cgaacggccg
     1981 cgtcgagcag gcgagacccg ggctcggacg gcgcacggcc gcagagggtc tcgcggcgtt
     2041 cgcgctggtc ttcgccggct gcggcgcgat cgtcgcgaac gtccaatatg acggtgccgt
     2101 cggggcggtc ggccccgcgg tggctattgc gatcggcggc acggttggcc tcgacgcg
//
LOCUS       DASQWN010000200         4249 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1324768, whole genome shotgun sequence.
ACCESSION   DASQWN010000200 DASQWN010000000
VERSION     DASQWN010000200.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 4249)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4249)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4249
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1324768"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..306
                     /locus_tag="VE686_03730"
     CDS             <1..306
                     /locus_tag="VE686_03730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009763269.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA
                     (pseudouridine(1915)-N(3))-methyltransferase RlmH"
                     /protein_id="HYY83595.1"
                     /translation="LDKSGPAALIAFDERGKTLTSEAFAGQIARWRDNGRPAAACLVG
                     GPDGLDDAIRARADLILSFGALTLPHQLVRVLVVEQLYRALTILAGHPYHRGDQDTP"
     gene            309..1649
                     /locus_tag="VE686_03735"
     CDS             309..1649
                     /locus_tag="VE686_03735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012317126.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan DD-metalloendopeptidase family
                     protein"
                     /protein_id="HYY83596.1"
                     /translation="MASLRFRAPSLAMLACAGLTLALAAHAQEPGRAPAPPANESAED
                     KARREGDLKALQEALAASAEARKRFEAEIAEIKTDRAKLNAALVETAAKVRATEDRTR
                     ALEQRLQTLSGSENAIRVSLESRRAVIGEVLAALQRMGRRPPPAVLVRPEDILGAVRT
                     SMLLSAVLPELRGEVETLAGDLAELVRLKQAIVADREALATELTALAEDQRQLDALVA
                     ARQGQLASVEKAFGGERDKAAELAGQARTLKELIDRMEREVAGGQRAASDARRAAEAQ
                     ARETRERFASLAFRDPARLAPKIPFVEARGVLPKPVGGDQVRDFGAPDGLGGTTRGVS
                     IATRPKAVVVSPADGWVAFSGPFRSYGRLLIINAGGGYYLLLAGMNHINVEVGQFVLA
                     GEPVATMGDTSSASPAVGPLESTGPVLYVELRKDGGSIDPGPWWAKSQSEKVRG"
     gene            1649..2974
                     /locus_tag="VE686_03740"
     CDS             1649..2974
                     /locus_tag="VE686_03740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019906033.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S41 family peptidase"
                     /protein_id="HYY83597.1"
                     /translation="MRKLSLVFMGAVAGAGVATLVSQANLLSTTSAVAASAETYRQLS
                     LFGDVFEKVRTDYVEKPEEGKLIESAINGMLTSLDPHSSFMDAKSFRDMQVQTRGEFG
                     GLGIEVTMEEGLVKVVTPIDETPAARAGILANDIISQIDGESVQGLTLNQAVDKMRGP
                     VNSSVKLTIQRKERKDPLEVSLTRETIRIRPVRARTEGGDVGYLRVTQFNEQTYEALK
                     AAIDKISTEVGQDKLKGYVIDLRNNPGGLLDQAILVSDAFLDRGEIVSTRGRNAEETQ
                     RFSAKAGDLTKGKQLVVLINGGSASASEIVAGALQDHKRATVLGTRSFGKGSVQTIIP
                     LGGNGAVRLTTARYFTPAGRSIQAKGIDPDQIILQEVPEELKGKDETKGEAGLRGHLK
                     NSDKEEKGGSSAYVPPDPAKDKQLITAFEYLRGMRKGAAVVPPAGGVPN"
     gene            3095..>4249
                     /locus_tag="VE686_03745"
     CDS             3095..>4249
                     /locus_tag="VE686_03745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018261482.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="divergent polysaccharide deacetylase family
                     protein"
                     /protein_id="HYY83598.1"
                     /translation="MDLASDELTRPLGLDPPRPPLRLPRIPRGVLIGAALTTLGAGSI
                     YLAIPADPLAGVPHAIVPIVTAPVRPEPPQAGLAHIHTVPTEVARRMGSDVESASGVS
                     VVRGDGTSAPEALIITIPDDPGTIRLNPAPDGRLIEQSRHGLLPKVGRDGSRPATVYA
                     RPAGALPGGVKPVARIALVIGGLGLSEAATADALAKLPRAATLAFAPYGRDLEAQVAR
                     ARGRGHEVLLQVPMEPFDYPANDPGPHTLTVTARPQDNLDKLHWLMARFSGYVGIVNF
                     MGAKITADEAALAPLMREIAARGLGFVDDGSSPRSLAAKVAVAAKTPTARADVVLDAV
                     ARADAVDRELARLEALAKERGYALASASVLPVTLERVARWAKELEGKGILL"
BASE COUNT          674 a         1489 c         1461 g          625 t
ORIGIN      
        1 ctcgacaaga gcgggccggc ggccctcatc gccttcgacg agcgcggcaa gactctcacc
       61 agcgaggctt tcgcgggaca gatcgcgcgc tggcgcgaca atggccgccc ggcggccgcc
      121 tgcctcgttg gcgggccgga cgggctcgac gatgcaatcc gcgcccgcgc cgatcttatt
      181 ctttcgttcg gggccctaac tctgccgcac caactcgttc gtgtgcttgt ggtggaacag
      241 ctctataggg ccctgacgat tctcgccggc cacccctatc atcggggcga ccaggacact
      301 ccttgagcat ggcctcgctt cgcttccgcg ccccttcgct cgcgatgctc gcctgtgccg
      361 ggctgacgct cgcgctcgcg gcgcacgcgc aggagccggg ccgcgcaccc gctcctcctg
      421 cgaatgagag cgcagaggac aaggctcgac gcgagggcga tctcaaggcc ctgcaggagg
      481 cgctcgccgc tagcgccgag gcgcgcaagc ggttcgaggc cgagatcgcc gagatcaaga
      541 cggaccgggc caagctcaat gccgcccttg tcgagaccgc cgccaaggtt cgtgcgacgg
      601 aagaccgcac gcgcgccctc gagcagcgcc tgcagacgct gtcgggcagc gagaatgcca
      661 ttcgcgtctc gctcgagagc cggcgcgccg tgatcgggga ggtgctggct gcgctccagc
      721 gtatgggcag gcggccgccg cccgccgttc tcgtccgtcc cgaggacatt ctcggcgctg
      781 tgcgcacgtc gatgctcctc tccgccgtgc tgccggagtt gaggggcgag gtcgagacgc
      841 tggcgggcga cctcgccgag ctcgtccggc tcaagcaggc catcgttgcc gaccgcgagg
      901 cgcttgcgac cgagctgacg gcgctcgccg aagaccagcg ccagctcgac gcgctcgtgg
      961 ctgcgcgtca gggccagctc gcgagcgtcg aaaaggcgtt cgggggcgag cgcgacaagg
     1021 ctgccgaact cgccggccag gcgcgtactc tcaaagaatt gatcgaccgc atggagcgcg
     1081 aggtcgcagg cgggcagcgc gccgccagcg acgcgcggcg agcggcggag gctcaggcac
     1141 gtgaaacgcg ggagcgcttc gcgagccttg ctttccgcga tccggcgcgg ctggcgccga
     1201 agattccgtt cgtagaggct cgcggcgtgc tcccgaagcc cgtcggaggc gatcaggtgc
     1261 gcgatttcgg cgctccggac ggcttgggcg ggacgacgag gggcgtgtcc atcgcgaccc
     1321 ggccgaaggc cgtggtggtg tcgccggccg atggctgggt cgcattttca ggcccgtttc
     1381 gttcgtacgg gcgactcttg atcatcaatg ccggcggcgg gtactatttg cttctggccg
     1441 gcatgaacca tatcaacgtg gaagtcggcc agtttgtcct agccggggag ccagtcgcga
     1501 ccatgggcga cacttcgtcc gcgtcgccgg cagtcggacc gctcgaatcg accggccctg
     1561 tgttgtatgt cgagttgcgt aaggacggcg gctcgatcga tccgggccca tggtgggcga
     1621 aatcgcaaag cgaaaaggtt cgcggctaat gcgcaaattg tctctggtct tcatgggcgc
     1681 ggtggccggc gccggcgtcg cgaccctcgt ttcgcaagcc aacctcctct cgacgacgag
     1741 cgcggttgcc gcctcggccg agacgtatcg ccagctcagc ctttttggcg acgtgttcga
     1801 gaaggtacgg accgactacg tcgagaagcc cgaagagggc aagctcatcg agtctgccat
     1861 caacggcatg ctgacgtccc tcgacccgca ttcgagcttc atggacgcca agagcttccg
     1921 cgacatgcag gtccaaaccc gcggcgagtt cggcgggctc ggcatcgagg tcacgatgga
     1981 agagggcctc gtcaaggtgg tcacgcccat cgacgagacc ccggcggcgc gcgcgggcat
     2041 cctcgccaac gacatcatca gccagatcga cggcgagagc gtgcaggggc tcaccctcaa
     2101 ccaggctgtc gacaagatgc gcggcccggt gaactcgagc gtcaagctca cgatccagcg
     2161 caaggagcgc aaggaccccc tcgaggtctc cctgacgcgc gagaccatcc gcatccgccc
     2221 cgtgcgggcg cgcacggagg gcggcgacgt cgggtacctg cgcgtgacgc agttcaacga
     2281 gcagacctat gaggccctca aggccgccat cgacaagatc tcgaccgagg tcggccagga
     2341 caagctcaag ggttacgtca tcgaccttcg caacaatccg ggcggcctcc tcgaccaggc
     2401 gatcctcgtc tccgacgcct tcctcgatcg tggtgagatc gtttccaccc gcggccgcaa
     2461 cgccgaagag acgcagcgct tcagcgccaa ggccggcgac ctcaccaagg gcaagcagct
     2521 ggtcgtgctg atcaacggcg gctcggcctc ggcctcggag atcgtcgcgg gtgccctgca
     2581 ggaccacaag cgcgcgacgg tgctcggcac gcgctccttc ggcaagggct cggtccagac
     2641 catcatcccg ctcggcggca acggggcggt gcggctcacc acggcgcgct acttcacgcc
     2701 ggcgggacgc tcgatccagg ccaagggcat cgaccccgac cagatcatcc tccaggaggt
     2761 cccggaggag ctcaagggca aggacgagac caagggcgag gccggcctgc gcggccacct
     2821 caagaactcc gacaaggagg agaagggcgg ctcgtcggcc tacgtcccgc cggatccggc
     2881 gaaggacaag cagctcatca ccgcgttcga gtacctgcgc ggcatgcgca agggtgccgc
     2941 ggtggttccg ccagcgggcg gggtgccgaa ctaggggccg cccgccgctc gttaacggtc
     3001 tgctaaccat agaggcccgc agtgtcgtcc cgacgacggc actgcgggcc tttcgattcg
     3061 atagccgcca tggcccgcca cgaggatcgc gcgggtggat ctcgcctcag acgagctgac
     3121 gcggcccctc ggcctcgatc cgccccggcc accgctgcgg ctgcctcgta ttcccagggg
     3181 ggtgctgatc ggtgcggcgc tgaccacgct cggcgccggg tcgatctacc tcgccatccc
     3241 cgcggacccg cttgccgggg tgccgcacgc catcgtgccg atcgtgaccg cgcctgtgcg
     3301 tccggagccg ccgcaggcgg gcttggccca catccatacg gtcccgaccg aggttgcacg
     3361 gcgcatgggg agcgacgtcg aatcggcctc gggcgtgtcg gtggttcggg gcgacggcac
     3421 gagcgcgccc gaggccctca tcatcaccat cccggacgac cccggcacca tccggctcaa
     3481 ccccgctccc gacggccgcc tcatcgagca gagccggcac ggcctgctgc ccaaggtcgg
     3541 acgcgacggc tcgcggccgg caacggtcta tgcacggccc gcaggcgcat tgccgggcgg
     3601 ggtcaagccg gtcgcccgga tcgcccttgt catcggcggc ctgggcttga gcgaggccgc
     3661 cacggccgac gcgctggcaa agctcccgcg cgcggcgacg ctcgccttcg cgccgtatgg
     3721 ccgcgacctc gaggcgcagg tcgcccgcgc ccgcggccgt ggtcatgaag tcctgctaca
     3781 ggtgccgatg gagccgttcg attatcccgc gaacgacccc gggccccata cgctgaccgt
     3841 caccgcaagg ccgcaggaca acctcgacaa gctgcactgg ctgatggcgc gcttctccgg
     3901 ctatgttggc atcgtgaact tcatgggcgc gaagatcacg gccgacgagg cggcgctcgc
     3961 gccgctcatg cgcgagatcg ccgcgcgcgg gctcggcttc gtcgacgacg gctcgtcgcc
     4021 gcgctcgctc gcagcaaagg tcgccgtggc ggcgaagaca ccgacggctc gcgccgacgt
     4081 ggtgctcgac gccgtcgcgc gcgccgacgc cgtcgaccgg gaactcgccc ggctggaagc
     4141 cctggcgaag gagcgcggct atgcgcttgc gagcgcgagc gtgctgcctg tcacgctcga
     4201 gcgggtcgcg cgctgggcca aggaactcga aggcaagggg atcctgctc
//
LOCUS       DASQWN010000201         2007 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1325274, whole genome shotgun sequence.
ACCESSION   DASQWN010000201 DASQWN010000000
VERSION     DASQWN010000201.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2007)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2007)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2007
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1325274"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..461)
                     /locus_tag="VE686_03750"
     CDS             complement(<1..461)
                     /locus_tag="VE686_03750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012564320.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_function: GO:0008097 - 5S rRNA binding [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L25/general stress protein
                     Ctc"
                     /protein_id="HYY83599.1"
                     /translation="MSDVKELKAVARDRAGKGAARAVRRQGQVPAVIYGGGEAAQPIA
                     VDFNQARQLIFAGHFLTTVFDIDVDGRRTRAIPRDYQLDPVKDFPVHIDFLRLAEGQA
                     IRVTVPVHVVGAETSPGVKRGGTVQIVGHAVELMVPSDRIPDYVEASVADL"
     gene            complement(600..1172)
                     /locus_tag="VE686_03755"
     CDS             complement(600..1172)
                     /locus_tag="VE686_03755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019400343.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:1990397 - queuosine salvage [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="VUT family protein"
                     /protein_id="HYY83600.1"
                     /translation="MPMPDNDRRRLAEGLAYLALFTLTIPAANWMIGHVGTTCVPNGP
                     CLIPVAPGLTAPSAVVVVGLAFVLRDLVQRRLGARAAFAAVVVGAALSALLAPAQIVV
                     ASTAAFLLSELADFAVYTPLQRRRFVLAVLLSSLAGLVVDSAIFLYLAFGSLDFLLGQ
                     IVGKAWMVILALPFAAWLRRRDERLGLIPA"
     gene            complement(1197..>2007)
                     /locus_tag="VE686_03760"
     CDS             complement(1197..>2007)
                     /locus_tag="VE686_03760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020095332.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="toprim domain-containing protein"
                     /protein_id="HYY83601.1"
                     /translation="KLLDWVIDRAEERMRRRQEKEVARKTATRKLRLPGKLADCSNAG
                     AAGSELFIVEGDSAGGSAKQARDRATQAVLPLRGKILNVASAGKDKLVANQQLSDLVQ
                     ALGCGTGSHFREDDLRYEKVIIMTDADVDGAHIASLLITFFYRQTPRLIDKGHLYLAI
                     PPLYRLTQGAKTVYARDDVDKDKLLKTAFKGNGKVEIGRFKGLGEMMPAQLKETTMDR
                     KKRLLLKVVVESEERADTSDTVERLMGNKPEARFAFIQERAAFADEDALDI"
BASE COUNT          299 a          676 c          728 g          304 t
ORIGIN      
        1 tcgagatccg ccacggaggc ctcgacgtag tcggggatgc ggtcgctcgg gaccatgagc
       61 tcgaccgcgt ggccgacgat ctgcaccgtg ccgccgcgct tcacgcccgg cgaggtctcg
      121 gcgccgacga cgtgcacggg cacggtgacg cggatcgcct ggccctcggc gaggcgcagg
      181 aagtcgatgt ggacggggaa gtccttcacc gggtcgagct ggtagtcgcg cgggatagcg
      241 cgggtccggc ggccgtcgac gtcgatgtcg aacaccgtcg tcaggaagtg accggcgaag
      301 atcagctgcc ttgcctggtt gaagtcgacc gcgatcggct gggccgcttc gccgccgccg
      361 tagatcacgg ctggtacctg gccctggcgc cgaacggccc gggcggcccc cttgccggcc
      421 cggtcgcgcg ccacggcctt gagctctttc acgtcactca tggctgtggt cctttgatgg
      481 tgcttcaaaa gccgcgggcc gccttgcggc ggcccctgcg gtcgtgcgcc cgtgcctcca
      541 agggtgtcga gcgggcgcgg gcgggcttat agcctctgag gggcgcgaag gcaacgcgct
      601 caggcgggga tcagcccgag ccgctcgtcc cggcgccgca gccaggccgc gaaggggagg
      661 gcgaggatca ccatccacgc cttgccgacg atctgcccga gcaggaaatc aaggctgccg
      721 aaggcgagat agaggaagat ggcgctgtcg acgacgagcc cggcgaggct cgacagaagc
      781 acggcgagga cgaagcggcg gcgctgcagc ggcgtgtaaa cggcgaagtc ggcaagctcg
      841 gagagcagga aagccgccgt cgaggcaacg acgatctgcg cgggcgccag cagggccgag
      901 agggcggcgc ccacgacgac ggccgcgaac gcggcccggg ccccgaggcg gcgctggacg
      961 aggtcgcgca gcacgaaggc gaggcccacg acgaccacgg cgctcggcgc cgtcagcccc
     1021 ggcgcaaccg ggatcaggca cggcccgttc ggcacgcacg tcgtgcccac gtggccgatc
     1081 atccagttcg ccgccgggat ggtcagcgtg aacagcgcga ggtaggcgag cccctcggcg
     1141 aggcggcgac ggtcgttgtc gggcatcggc atggcggcct catgccgcgc caagcctcag
     1201 atgtcgagcg cgtcctcgtc ggcgaaggcg gcgcgctcct gaataaaggc gaagcgcgcc
     1261 tccggcttgt tgcccatcag gcgctcgacc gtgtcggacg tgtcggcgcg ctcctcactc
     1321 tcgaccacga ccttcagaag caggcgcttc ttgcgatcca tggtcgtctc cttgagctgc
     1381 gccggcatca tctcgccgag gcccttgaag cggccgatct cgaccttgcc gttgcccttg
     1441 aacgccgtct tgaggagctt gtccttgtcg acgtcgtcgc gggcgtagac ggtcttcgcc
     1501 ccttgcgtca gccggtacag gggcgggatg gcgagataga ggtgcccctt gtcgatcagc
     1561 cggggcgtct gccggtagaa gaaggtgatg agcagcgacg cgatgtgggc gccgtccacg
     1621 tcggcgtccg tcatgatgat gaccttctcg tagcgaagat cgtcctcgcg gaagtgcgag
     1681 cccgtgccgc agccgagcgc ctggacgagg tccgagagct gctggttggc gacgagcttg
     1741 tccttgccgg ccgaggccac gttgaggatt tttccccgca gcggcagcac ggcctgagtc
     1801 gcccggtcgc gcgcctgctt ggccgagccg ccggccgaat ccccctcgac gatgaacagc
     1861 tcggagccgg ccgcgccggc gttgctgcag tcggccagct tgcccggcag gcgcagcttc
     1921 cgcgttgcgg tcttccgcgc cacctccttt tcctggcgtc ggcgcatccg ctcctcggcc
     1981 cggtcgatga cccagtcgag gagcttg
//
LOCUS       DASQWN010000202         4900 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_35407, whole genome shotgun sequence.
ACCESSION   DASQWN010000202 DASQWN010000000
VERSION     DASQWN010000202.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 4900)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4900)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4900
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_35407"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..482)
                     /locus_tag="VE686_03765"
     CDS             complement(<1..482)
                     /locus_tag="VE686_03765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020093153.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0008410 - CoA-transferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CoA transferase"
                     /protein_id="HYY83602.1"
                     /translation="MTDTTAADGPLGGVRVVDLTSVIMGPLATHVLADLGADVIKVEA
                     PEGDSLRNYRPLRNHGMAGNFLHLNRNKRSIVLDLKSEEGRAALDRLIETADVFVHAI
                     RPQAIAKLGYTYDKVRALKPDIVYCGAYGFSAQGPYGDKAAYDDLIQAGCGIASLFVE
                     R"
     gene            complement(479..1582)
                     /locus_tag="VE686_03770"
     CDS             complement(479..1582)
                     /locus_tag="VE686_03770"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012320205.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase family protein"
                     /protein_id="HYY83603.1"
                     /translation="MSDAQAEDVSAILLEQTDRLFQQHATPERLQAADRGEWPAAIWD
                     AVAEAGLPLALLSEEQGGYGLAPADALKLIRRAAYHTAPVPLAETMLATALWAAASGE
                     PPEGVITFGSGTLALAREGARYRLSGRLARVPWGDRADRILVFAHDEAGAAHLALIPP
                     PAPGNEARVNLAFEPRPNLSFEGVAVPDEGVRIAPPICSEGLLAFGAAVRAQQMVGAM
                     ERCLEHALKHANERKQFGRALAKFQAIQHMLAEAAGHFAAASAAADGAAEAWGHPEFR
                     LATAIAKARVGEAAGKVAAICHQVHGAMGFTQEHPLHFATRRLWSWRDEFGGEAFWEA
                     EIGRSVCAQGGEALWDRLVRVAHLTTVDGGRQA"
     gene            complement(1579..2760)
                     /locus_tag="VE686_03775"
     CDS             complement(1579..2760)
                     /locus_tag="VE686_03775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018457356.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016627 - oxidoreductase activity, acting
                     on the CH-CH group of donors [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase family protein"
                     /protein_id="HYY83604.1"
                     /translation="MLLKEPGRRALQGFEFRGVALPPEAEDARRRVRAFLADEQAQGR
                     YAPHRSSWTTFDPAFSARAGAAGLIGVTWPKEYGGQGLSSFSRFVITGEMLAAGAPSG
                     AHWIADRQSGPQVLRHGSERAKRDILPRICAGTCFFGIGMSEPESGSDLAAVRTKGVK
                     VDGGWVINGSKIWTTNAHLVHYLIALVRTGDAGEDRHGGLTQFLIDTARPGVTIRPIN
                     DIAGKHEFNEVFFTDHFVPDDMMVGAEGQGWSMVTAELAFERSGPDRFLSDYRLLVEL
                     IDRVGPEPDDRQAVEIGRLVAHLSALLRMSTSVASLLDEGRSPNTEAALVKDVGTAFE
                     REIPEIARRLVPIEPSLEDADDHLSEVLADVTMRAPSFTLRGGTREVLRGVIARGLGL
                     R"
     gene            2910..3908
                     /locus_tag="VE686_03780"
     CDS             2910..3908
                     /locus_tag="VE686_03780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020093156.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HYY83605.1"
                     /translation="MLRAKGLGAALLTLMLASAAAPAQAETSKVRIGLQFGLTYLPIM
                     VAHSERMIEKHAKAQGLPEVEVTLQRFSGTTAVNDALLSNSVDFGALGMPGVLIAWEK
                     TRGRQHVKGIAGLATITYFVYVNKPNLKSLADFTDQDKIAVPAFNSPQAILLRAAAEK
                     QLGSAAKANALMVSMPHPDATGALLSGAAISGYFSTPPFTQVLAKDSRVRPILTSTDI
                     LGKDTTAAGVTVTQGFVDDNPKVSQAVLDALAEATQLIKDDPKRAADIYIKSETVKLS
                     QEEVEAILKDGSTTFDVTPHGVMDYAQMMQKQGFMKAIPKSWDDVFLPLLKGRKGD"
     gene            3917..>4900
                     /locus_tag="VE686_03785"
     CDS             3917..>4900
                     /locus_tag="VE686_03785"
                     /EC_number="2.8.3.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012321057.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CoA transferase"
                     /protein_id="HYY83606.1"
                     /translation="MASEKPAPKAFEPGAPCPLDGVRVIDVSRLVAGNMLSLQLADFG
                     AEVIKVEDPKRGDPLRHWRVEGVSVHWKVYGRNKKSLALSLREARGRELFLKLAATAD
                     ILIENFRPGTLENMGFAPEVLHAANPGLVIVRISGFGQDGPYRDRPGFGTLVEAMSGF
                     AAKNGYPDSPPVLPPMSLADMVAGLYGASAVLVALRHREVGGGKGQVIDLPLLDPLFS
                     ILGPDAAVYRLTGELPPRTGSRSNIAGPRNVFRTSDGHWIAISASMQGMVERLYRAVG
                     RPDMITDPRFRTNADRVKNAQESEAPIAAFIVARTLEEGLAVFEAAEITAAP"
BASE COUNT          770 a         1721 c         1699 g          710 t
ORIGIN      
        1 cgctcgacga acagcgaggc gatgccgcag ccggcctgga tgaggtcgtc gtaagcggcc
       61 ttgtcgccgt acggcccctg cgccgagaaa ccgtaggcgc cgcaatagac gatgtcgggc
      121 ttgagcgcgc ggaccttgtc gtaggtgtag ccgagcttgg cgatcgcctg cgggcggatg
      181 gcgtgcacga agacgtcggc ggtctcgatg agacgatcga gagccgccct gccctcctcg
      241 ctcttcaggt cgagcacgat gctgcgcttg ttgcggttga ggtggaggaa gttgcccgcc
      301 atgccgtggt tgcgtagcgg gcggtagttg cgcagcgagt cgccttccgg cgcctcgacc
      361 ttgatgacgt cggcgccgag atcggcgagg acgtgcgtcg cgagcggccc catgatgacg
      421 ctcgtgagat cgacgacgcg gacgccgccg aggggcccgt cggcggcagt ggtatccgtc
      481 aagcctggcg tcctccgtcg acggtggtga ggtgcgcgac gcgcacgagc ctgtcccaga
      541 gcgcctcgcc gccttgcgcg cacaccgagc ggccgatctc ggcctcccag aacgcctcgc
      601 cgccgaactc gtcgcgccac gaccataggc gccgggtggc aaagtggagc gggtgctcct
      661 gcgtgaagcc catggccccg tgcacctggt ggcagatggc cgcgaccttg ccggccgcct
      721 ccccgacccg cgctttggcg atggcggtcg ccaggcggaa ctcgggatgc ccccaggcct
      781 cggcggcacc atcggcggcg gccgaagccg ccgcgaagtg gccggcggct tcggcgagca
      841 tgtgctggat ggcctggaac ttcgccaagg cgcggccgaa ctgcttgcgc tcgttggcgt
      901 gcttgagcgc gtgctcgagg cagcgctcca tggcgcccac catctgctgc gcgcgcacgg
      961 cggcgccgaa cgcgagaaga ccctcggagc agatcggcgg cgcgatgcgg acgccctcgt
     1021 ccggcacggc gaccccttcg aaggaaaggt tcgggcgcgg ctcaaaggcg aggttcaccc
     1081 gcgcctcgtt gccgggcgcc ggcggcggta tgagggcgag gtgcgcggcg cctgcctcat
     1141 cgtgggcgaa cacaaggatg cggtcggcgc ggtcgcccca cggcacgcgg gcgagccggc
     1201 ccgagaggcg gtatcgggcg ccttcgcgcg ccagtgcgag cgtgccgctt ccgaacgtga
     1261 tgacgccctc gggaggctcg cccgaggccg cggcccagag cgccgtcgca agcatggtct
     1321 cggcaagcgg caccggcgcc gtatgatagg cggcgcgccg gatgagcttg agcgcgtcgg
     1381 caggcgcaag cccgtaaccg ccctgctcct ccgagagaag cgcgagcggg agacccgcct
     1441 ctgcaaccgc gtcccagatg gcggccggcc actcgccgcg gtcggccgcc tgcagacgct
     1501 ccggcgtcgc gtgctgctgg aacagccgat ccgtctgctc aagcaggatc gccgagacgt
     1561 cctcggcctg cgcgtcgctc atcgaagccc gagcccccgg gcgatgacgc cgcggagcac
     1621 ctcgcgcgtg ccgccgcgca aggtgaagga cggcgcgcgc atggttacgt cggcgagcac
     1681 ctccgacagg tgatcgtcgg cgtcctcgag gctcggctcg atcggcacga ggcggcgcgc
     1741 gatctcgggg atttcgcgct cgaaggcggt cccgacgtcc ttgacgaggg cggcctccgt
     1801 gttcgggctg cggccctcgt cgagaaggct cgccaccgag gtcgacatgc gcaacagcgc
     1861 cgagagatgc gcgaccaggc gcccgatctc gaccgcctgg cgatcgtcgg gctcgggacc
     1921 gacgcggtcg atgagctcca cgagcagccg gtagtcggag aggaatcggt cgggtccgga
     1981 gcgctcgaag gcgagttccg ccgtcaccat ggaccacccc tgcccttccg ccccgaccat
     2041 catgtcgtcc ggcacaaagt ggtcggtgaa gaagacctcg ttgaactcgt gcttgccggc
     2101 gatgtcgttg atgggacgga tggtgacgcc cggccgggcg gtgtcgatga ggaactgcgt
     2161 caggccgcca tgccggtcct cgccggcgtc gccggtgcgc accagggcga tgaggtagtg
     2221 cacgaggtgc gcgttggtgg tccagatctt cgagccgttg atgacccagc cgccgtcgac
     2281 cttcacgccc ttggtgcgca cggcggcgag atcggagccc gactcaggct cgctcatgcc
     2341 gatgccgaag aagcacgtgc cggcgcagat tcgcgggagg atgtcgcgct tggcgcgctc
     2401 gctgccatgg cgcaggacct gcggccccga ctgccggtcg gcgatccaat gcgccccaga
     2461 gggagcgccg gcggcaagca tctcgcccgt aatgacgaag cgcgaaaagc tcgacagccc
     2521 ctgcccgccg tactccttgg gccaggtcac gccgatgagg ccggccgccc cggcccgcgc
     2581 gctgaaggcg ggatcgaagg tcgtccacga cgagcggtgc ggggcatagc gcccctgcgc
     2641 ctgctcgtcc gccaggaagg cgcgcacgcg ccgccgcgca tcctcggcct cgggcggcaa
     2701 cgccaccccg cgaaactcga agccttgcag ggctctcctc ccaggttcct tgagcagcac
     2761 ctaagcacct cggcgcgctc ccgcgcaatc acgccgcgga atggcagggg tgcgcgcgga
     2821 cagcggttgt tcggccggcg cggatgcgct taggtgcgcg aaacggccgc caccacagct
     2881 gccggcaaat cgactcggga gaaacgtcga tgcttcgtgc aaagggcctt ggcgccgcgc
     2941 tgctcaccct gatgctcgcg agcgccgccg cgcccgcgca ggccgagacc agcaaggttc
     3001 gcatcgggct gcagttcggc ctgacctacc tgcccatcat ggtcgcgcac agcgaacgca
     3061 tgatcgagaa gcatgccaag gcacaggggc tgccggaggt cgaggtcacg ctgcagcgct
     3121 tcagcggcac caccgccgtc aacgacgccc tgttgtcgaa ctcggtcgac ttcggcgccc
     3181 tcggcatgcc cggcgtgctg atcgcgtggg agaagacccg cgggcgccag catgtgaagg
     3241 gcatcgccgg tctcgcgacg atcacctact tcgtctacgt caacaagccg aacctcaagt
     3301 cgctcgccga cttcaccgac caggacaaga ttgccgtgcc ggccttcaac tcgccgcagg
     3361 cgatcctgtt gcgggccgct gccgagaagc agctcggctc ggccgccaag gccaatgcac
     3421 tgatggtgag catgccccat ccggacgcca ccggcgcgct cctgtcggga gccgccatca
     3481 gcggctactt ctcgacaccg cccttcaccc aggtgctcgc caaggattcg cgcgtgcgcc
     3541 cgatcctcac ctcgacggat atcctgggca aggacaccac ggccgccggc gtgaccgtca
     3601 cgcagggctt cgtcgacgac aacccgaagg tctcgcaggc cgttctcgat gcgctcgccg
     3661 aggcgacgca gctcatcaag gacgacccga agcgagcggc cgacatctac atcaagtccg
     3721 agaccgtgaa gctgtcgcag gaggaggttg aggcaatcct gaaggacggc tcgaccacct
     3781 tcgacgtcac gccgcacggc gtcatggact acgcgcagat gatgcagaag cagggcttca
     3841 tgaaggccat cccgaaaagc tgggacgacg tcttcctgcc cctgctcaag ggccggaagg
     3901 gcgactgagg cgcgtcgtgg caagcgagaa gccggcgcct aaggccttcg agccgggcgc
     3961 gccctgccct ctcgacggcg tacgcgtcat cgacgtgtcg cggctcgtcg ccgggaacat
     4021 gctgagcctt cagctcgccg acttcggcgc cgaggtcatc aaggtcgagg atccgaagcg
     4081 cggcgatccc ttgcgccatt ggcgagtgga gggcgtcagc gtccactgga aggtctacgg
     4141 gcgcaacaag aagagcctgg cgctgagcct acgcgaggcg cgcgggcgcg agctgttcct
     4201 gaagctcgcc gccaccgccg acatcctcat cgagaacttt cggcccggca ccctcgagaa
     4261 catgggcttt gcgcccgaag tgctgcacgc ggcaaatccg gggctcgtca tcgtgcgcat
     4321 ctccggcttc ggccaggacg gcccgtaccg cgaccgcccg ggcttcggca cccttgtcga
     4381 ggccatgtcg gggtttgcag cgaagaacgg gtaccccgac agtccgcctg tgctgccgcc
     4441 aatgtcgctt gccgacatgg tggccggcct ctacggcgcc tccgccgtgc tcgtcgcgct
     4501 gcgccaccgc gaggtcggcg gcggcaaggg ccaggtcatc gacctgccgc tgctcgaccc
     4561 gctgttctcg atcctcgggc ccgacgcggc ggtctaccgg ctcaccggcg aactgccgcc
     4621 gcgcacgggg agccgttcca acattgccgg gccgcgcaac gtgttccgca ccagcgacgg
     4681 gcactggatc gccatctcgg cctcgatgca aggcatggtc gagcgcctct accgtgccgt
     4741 cggccgtccc gacatgatca ccgatccgcg cttccgcacc aacgccgacc gggtcaagaa
     4801 cgcgcaggag agcgaggcgc ccattgccgc cttcatcgtc gcgcgcaccc tcgaggaggg
     4861 gctggcggtc ttcgaggccg ccgagatcac ggccgccccg
//
LOCUS       DASQWN010000203         3350 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_35521, whole genome shotgun sequence.
ACCESSION   DASQWN010000203 DASQWN010000000
VERSION     DASQWN010000203.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 3350)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3350)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3350
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_35521"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(444..1253)
                     /locus_tag="VE686_03790"
     CDS             complement(444..1253)
                     /locus_tag="VE686_03790"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HYY83607.1"
                     /translation="MTSDAIISLQRVSVTYRSGPAWNRRVVHAVRGVDIAIPRGTILG
                     LVGESGSGKTTVGRLCLGLLRPTEGAVLFDHAPMPKPRAIKGRAAVVLQQPEWALNPR
                     LRVGTSVAEPLTVLGIAKAERLERAREALSQVGLDPSLLTRYPHELSGGQRQRASIAR
                     ALITDPSFVVFDEAVSALDVSVQTQILNLIRSLQETRAFSALFISHDLAATRYVADRI
                     AVMRLGEIVDTADADRFYALPEHPYSRELWSTLMPADLAPEIAARPAETLS"
     gene            complement(1250..2236)
                     /locus_tag="VE686_03795"
     CDS             complement(1250..2236)
                     /locus_tag="VE686_03795"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HYY83608.1"
                     /translation="MTAIVSVRDLALDYVTGDGIVRALDGADLEVPEGVALGVVGESG
                     SGKSTLGLAVGRLLPGNLRRSGGDLTIRGRSVFACSPEEMRRLRRDLMGFVFQNPMQA
                     LDPTMRVGAQLALAHGDVRPGRDALIGELDRVGLREPERVLRSYPHELSGGMAQRVVI
                     AMAIARKPQILIADEPTASLDATIRDQVLKVLVAQSRAVGATMLLLSHELHVVARVCE
                     MVAVMYGGRVVEFGAAARVFRRPVHPYTRALLRAAPGHEPRRMILKPIPGMPPVLRGP
                     SQGCAFAPRCDLAAPICTTSRPPPRMVDGRRVLCHFAEESLALSERVEEAVP"
     gene            complement(2233..3126)
                     /locus_tag="VE686_03800"
     CDS             complement(2233..3126)
                     /locus_tag="VE686_03800"
                     /inference="COORDINATES: protein motif:HMM:NF012738.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HYY83609.1"
                     /translation="MSAGAETLPTSAARPVGIGPRRRRAARFDALSRGALVLLIIIVL
                     IGTFGHFLPIGDPEEIAVGPRLSPPSWEFLLGTDELGRSFLPRVVHGIRTTFLVSAMA
                     VLATAFIGTIVGMLSAYFGGFVDTLVMRLADVMFAFPAIVLGLLVSALLGPGIFPAVL
                     VISFVTLPLFVRLVRAVTLSVAGREFVVAAEVAGASTARILVLHLLPNVSGAVVVQLT
                     YALSIGMLVESGLSFLGLGTQPPDASLGSLLRLGAVYVGIAPWLVMSSGLLLALSIAS
                     VNLTGDGLRDAIDPLRGRALQ"
     gene            complement(3126..>3350)
                     /locus_tag="VE686_03805"
     CDS             complement(3126..>3350)
                     /locus_tag="VE686_03805"
                     /inference="COORDINATES: protein motif:HMM:NF012738.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease subunit"
                     /protein_id="HYY83610.1"
                     /translation="SSTFMGYLLGGAVVAEVLFSIPGVGLYVFNALGNRDYGVVQAGV
                     MLAAVIFVMINTLGDVLYAVLDPRIGSRAG"
BASE COUNT          582 a         1094 c         1240 g          434 t
ORIGIN      
        1 cagtcggcag cgtgggcccc gccaagtcgt gactcctgac gcgcttttcg ctggaccctt
       61 cagcgttgcg tgccgaagag cccggcttgc ggagcgcttg cgaggccgag cccggggcgg
      121 ccgttaagcc tatcggcgaa ctgcgttgga gtatgcgccg cgttccgaaa aggtgggtgt
      181 cgtggttcca gggagctcag cggcagcggc cgggtggccg cggggagggc cgttcgaatg
      241 cagccctcgg acgcactcgt cgaggatgga aggatgcaac gcttttcact ggccctcgtc
      301 ggacttgctc tggcgctgac gacgctctgg tgtgcggtcc tcggctggga agccttgcat
      361 gtcatcgtat tggtcgggat cataggcgcg ctcagcttca cggccgggaa ccccttgccc
      421 cgtacgggag cggctccgaa gactcatgac agggtctctg ccggccttgc agcgatctcg
      481 ggcgcgaggt cggctggcat gagggttgac caaagctctc ggctgtaggg gtgctcgggc
      541 agggcgtaga agcggtccgc atccgctgta tccacaatct cgccgaggcg catgaccgcg
      601 atccggtccg caacgtaccg ggtggccgcg aggtcgtggg aaatgaaaag ggccgagaac
      661 gcgcgggtct cctgcaggct acggatcaag ttcaggatct gggtttggac ggagacatcg
      721 agcgcactga cggcttcgtc gaagacgacg aagctcgggt cggtaatcag cgcacgcgca
      781 atcgaggccc gctggcgctg gccgcccgag agctcgtgcg ggtagcgggt caggaggctc
      841 ggatcgagcc cgacctggct caaggcctcg cgcgcccgct cgaggcgctc cgccttggcg
      901 atccccagga cagtcaaagg ctccgcgacc gaggtgccga cgcgcaggcg cggattcaac
      961 gcccattcgg gctgctgcag gaccacggcc gcgcggccct tgatggcacg gggcttcggc
     1021 atcggcgcgt gatcgaacag gaccgcgcct tccgtggggc gcaggagtcc gaggcagagg
     1081 cggccgacag tggtcttgcc cgagccggat tcgccgacga gccccaggat ggtcccgcgt
     1141 gggatggcga tatcgacgcc gcgcacggcg tggaccacgc gccggttcca cgccggccct
     1201 gaccggtagg taaccgagac gcgctgcagc gagatgatgg cgtcgctcgt cacggcaccg
     1261 cctcctcgac gcgctcggac agggcgagcg actcctcggc gaaatggcac agcacccggc
     1321 ggccatcgac catgcggggc ggtggccgcg atgtcgtgca gatcggcgcc gcgaggtcgc
     1381 agcggggtgc aaaggcgcag ccctggcttg gcccgcgcag gaccggcggc atgccgggga
     1441 tgggcttcag gatcatgcgc cgcggctcat ggccgggagc ggcccgcaga agcgcccgcg
     1501 tgtaggggtg gacgggccgg cggaagacgc gcgctgccgc cccgaactcc acgacgcggc
     1561 ccccgtacat aacggcgacc atctcgcaca cgcgcgcgac cacatggagc tcgtggctca
     1621 agagcagcat ggtggcgccg acggcgcggc tttgtgcgac gagcaccttg agcacttggt
     1681 cgcggatggt ggcgtcgagc gaggcggtcg gctcatcggc aatcaggatc tgcggcttgc
     1741 gggcgatcgc catggcgatg acgacgcgct gcgccatgcc tcccgagagc tcatgggggt
     1801 agctccgcag gacccgctcc ggctcccgga ggcccacacg gtcgagttca ccgatcagag
     1861 cgtcacggcc cggacggacg tcgccatgcg caagggcgag ctgagcgccg acacgcatcg
     1921 tggggtcgag ggcctgcatg gggttctgga acacgaaccc catgaggtcg cggcgcaggc
     1981 gccgcatctc ctcagggctg caggcgaata ccgagcggcc gcggatggtg agatcaccgc
     2041 cgctccggcg caggttgccg gggagcaagc gcccgaccgc cagcccgagc gtcgacttcc
     2101 ccgacccgct ctcgccaacg acgccgaggg cgacgccttc gggcacctcg aggtcggccc
     2161 cgtccagcgc gcggacgatc ccgtcgccgg tgacgtagtc gagcgccagg tcccgaacgc
     2221 tgactatggc ggtcattgca gcgcccggcc gcgcagcggg tcgatcgcgt cgcgcaggcc
     2281 gtcgccggtg aggttcacgg acgcgatcga gagcgcgagc aggagccccg acgacatgac
     2341 gagccaaggc gcgatgccga cgtacacggc gccgagccgc aggagggatc cgagcgacgc
     2401 gtcggggggc tgcgtcccca gcccgaggaa gctcaacccg ctctcgacca gcatgccgat
     2461 cgacaaggcg taggtgagct gcaccacgac cgcgccggag acgttcggca ggaggtggag
     2521 caccagaatg cgcgccgtcg acgcaccagc gacctcggcc gcgacgacga actcgcgtcc
     2581 ggcgacgctc agcgtcacgg cccgcacgag gcggacgaag agtggcaggg tcacgaacga
     2641 gatgacgagg acggcgggga agatgccggg cccgaggagc gccgagacga gaagcccgag
     2701 cacgatcgcc gggaaggcga acatgacgtc ggcaaggcgc atgacgaggg tgtcgacgaa
     2761 tccgccgaag taggccgaga gcatgccgac gatggtgccg atgaacgccg tcgcgagcac
     2821 cgccatggcg gagaccagga acgtcgtgcg gatgccgtgc acgacgcgcg gcaggaacga
     2881 gcgcccgagc tcgtcggtcc cgaggaggaa ctcccatgat ggcggcgaga ggcgcgggcc
     2941 gaccgcgatc tcctccggat ccccgatcgg caggaagtgg ccgaaagtcc cgatgagcac
     3001 gatgatgatg aggaggacga gggcgccgcg ggaaagcgcg tcgaagcggg ccgcgcggcg
     3061 gcggcgcggg ccaatgccca cgggacgcgc ggcggaggtc ggcagggtct cggcgcccgc
     3121 actcatcagc cggcgcggct cccgatccga gggtcgagca cggcgtagag gacatccccg
     3181 agcgtattga tcatgacgaa gatcacggcc gccagcatga cccccgcttg caccacgccg
     3241 tagtcgcggt tgccgagcgc attgaagacg tagagcccta cgccgggaat cgagaacagc
     3301 acctcggcga cgacggcgcc gccgagcaga tagcccatga aggtcgagct
//
LOCUS       DASQWN010000204         2609 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_35570, whole genome shotgun sequence.
ACCESSION   DASQWN010000204 DASQWN010000000
VERSION     DASQWN010000204.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2609)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2609)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2609
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_35570"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..561
                     /gene="lepB"
                     /locus_tag="VE686_03810"
     CDS             <1..561
                     /gene="lepB"
                     /locus_tag="VE686_03810"
                     /EC_number="3.4.21.89"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009491080.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004252 - serine-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0006465 - signal peptide processing
                     [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptidase I"
                     /protein_id="HYY83611.1"
                     /translation="KHSIPFSPPLFSGRILGEAPKRGDIAVFKLPKDNSTDYIKRVIG
                     LPGDKIQVVEGILQINGKAVQRERIADYETSDAFGRTIAVPQYQETLPNGVSHRIIER
                     DGDRGYWDNTYVYTVPAGHFFMMGDNRDNSTDSRDESSVGFVPFENLVGRADIIFFSI
                     DENASAWKIWEWPWTVRWNRLLRPIK"
     gene            570..1280
                     /gene="rnc"
                     /locus_tag="VE686_03815"
     CDS             570..1280
                     /gene="rnc"
                     /locus_tag="VE686_03815"
                     /EC_number="3.1.26.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009491081.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004525 - ribonuclease III activity
                     [Evidence IEA];
                     GO_process: GO:0006396 - RNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease III"
                     /protein_id="HYY83612.1"
                     /translation="MPRRTTTLDDLEHKLGYVFSDKDLVERALTHVSANGRSYQRLEF
                     LGDRVLGLAVAELLYAAFPKAQEGELSRRLSDLVRRETCADLAAAWHLAPHLKLSKGE
                     IQQGGRKSRTILADVFEAILGAVFLDGGYSAARDVIERAYGERLTERQKPAHDAKTAL
                     QEWAQGRGLPTPCYEVVEQSGPDHKPMFRIAARVPPLPEGIGLGASKRVAEQEAAQSL
                     LVREGVWKEARHGGPGYP"
     gene            1258..2193
                     /gene="era"
                     /locus_tag="VE686_03820"
     CDS             1258..2193
                     /gene="era"
                     /locus_tag="VE686_03820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015933657.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase Era"
                     /protein_id="HYY83613.1"
                     /translation="MADPATPEGAETGPTSAGFVALIGVPNAGKSTLLNALVGSKVSI
                     VSRKVQTTRTLVRGIAIEGSAQIVFVDTPGIFRPKRRLDRAMVTSAWGGAGDADVVCL
                     LVDARKGVTEEVEALLGKLPEVRQPKVLILNKIDLIERRRLLELAADLNGRAAFTDTF
                     MVSALTGDGVLDLKRRLAGMMTPGPWLYPEDQVSDAPLRMLAAEITREKIYERLHEEL
                     PYESTVETDQWQQRPDGSVRIEQTVFVERESQRKIVLGKGGQTIKAIGQAARRDIAEI
                     AESPVHLFLFVKVRENWGDDPERYREMGLEFPRGG"
     gene            complement(2196..>2609)
                     /locus_tag="VE686_03825"
     CDS             complement(2196..>2609)
                     /locus_tag="VE686_03825"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY83614.1"
                     /translation="AAALALPASLAPTVPSLASNDLSVYREGVGWIRGTQGALSAMQQ
                     PLTGARGARPEIVSACREAIVPAAVAKGATEVYAAGTARARRGGDGRVAPLEVRILYK
                     GVTATEVRQASVSCELDRAGQVVALTDTAAQPGRR"
BASE COUNT          432 a          906 c          880 g          391 t
ORIGIN      
        1 aagcactcca tcccgttcag tccgcccctg ttctccggcc gcatcctggg ggaagcgccg
       61 aagcgaggcg acatcgcggt cttcaagctg ccgaaggaca attcgaccga ctacatcaag
      121 cgcgtcatcg gcctgcccgg cgacaagatc caggtggtcg agggcatcct gcagatcaac
      181 ggcaaggccg ttcagcgcga gcgcatcgcc gactacgaga caagtgacgc cttcggccgc
      241 accatcgcag tcccgcagta tcaggagacc ctgccgaacg gcgtgtccca ccgcatcatc
      301 gagcgcgacg gcgaccgggg ctactgggac aacacctacg tctacaccgt gccggccggc
      361 cactttttca tgatgggcga caaccgggac aactcgaccg actcgcgcga cgagtcgagc
      421 gtcggcttcg tgccgttcga gaacctcgtc gggcgggccg atatcatctt cttctccatc
      481 gacgagaatg cctcggcgtg gaagatctgg gagtggcctt ggacggtgcg ctggaacagg
      541 ctcctgcgcc caatcaagtg acgctggccg tgccgcggcg gacgaccact ctcgacgacc
      601 tcgagcacaa gctcggctac gtcttcagcg acaaggatct cgtcgagcgc gcgctgacgc
      661 acgtcagcgc gaacggccgt agctatcagc ggctcgagtt cctcggcgat cgcgtgctcg
      721 ggcttgcggt cgccgagctc ctctacgcgg ccttccccaa ggcgcaggaa ggcgagctgt
      781 cgcgccggct ctcggacctc gtccggcgcg agacctgcgc cgatctcgcg gccgcgtggc
      841 acctcgcgcc gcacctcaag ctttccaaag gcgaaatcca gcagggcggc cggaagagcc
      901 gcaccatcct tgctgacgtc tttgaggcga tcctcggcgc cgtcttcctg gacggcggct
      961 attcggcggc ccgcgacgtc atcgagcgcg cttacggcga gcgcctcacc gagcgtcaga
     1021 agccggcgca cgacgccaag acggctctgc aggagtgggc gcaggggcgc ggattgccga
     1081 cgccgtgtta tgaggttgtc gagcagtccg ggccggacca caagccgatg ttccggatcg
     1141 ctgcccgcgt cccgcccctc ccggagggca tcggcctcgg tgcctcgaag cgcgtggcgg
     1201 aacaggaggc ggcgcaaagc cttctcgtcc gcgaaggagt gtggaaggag gcacgccatg
     1261 gcggacccgg ctacccctga aggcgccgag acaggcccga cgagcgcggg cttcgtcgcc
     1321 ctcatcggcg tcccgaacgc cggaaagtcg acgctcttga acgcgctcgt cggctccaag
     1381 gtgtcgatcg tgtcgcgcaa ggtccagaca acccgcacgc tggtgcgagg catcgccatc
     1441 gagggcagcg cgcagatcgt cttcgtcgac acccccggca tcttccggcc gaagcggcgg
     1501 ctcgaccgcg cgatggtgac ctccgcctgg ggcggggcgg gcgatgccga cgtcgtgtgc
     1561 ctcctcgtgg acgcacgcaa gggcgtcacc gaggaggtag aggcgctcct cggtaagctg
     1621 ccggaggtgc gccagccgaa ggtcctgatc ctcaacaaga tcgacctgat cgagcggcgg
     1681 cgcctgctcg agcttgcggc cgacctgaac ggccgcgcgg cgttcaccga caccttcatg
     1741 gtttcggcgc tgacaggcga cggcgtcttg gacctcaagc gccggctggc cggcatgatg
     1801 acccccggcc cgtggctcta cccggaggac caggtctcgg atgcaccctt gcgcatgctc
     1861 gcggccgaga tcacgcgtga aaaaatctac gagcgcttgc acgaggagct gccctacgag
     1921 tcgaccgtcg agaccgatca atggcagcag cgccctgacg gctcggtgcg gatcgagcag
     1981 accgtgttcg tggagcgcga gagccagcgc aagatcgtgc tcggcaaggg cggccagacg
     2041 atcaaggcca tcgggcaggc agcgcgccgg gacatcgccg agatcgccga atcccctgtg
     2101 cacctcttcc tgttcgtcaa ggtgcgcgag aattggggcg acgaccccga gcgctaccga
     2161 gagatgggtc tcgagttccc ccgcgggggc taactctacc gccggcccgg ctgcgctgcg
     2221 gtatcggtca acgcgactac ctgccctgcg cggtcgagtt cgcagctgac gctcgcctgg
     2281 cgcacctcgg tcgccgtcac gcccttgtag aggatgcgga cctccagagg cgccacgcga
     2341 ccgtcgccgc ccctgcgggc tcgcgccgtt ccggccgcat agacctctgt cgcgcccttg
     2401 gcgaccgcgg cgggaacgat cgcctcccgg cacgccgaga cgatctcggg acgggcgccg
     2461 cgtgcgcccg tgaggggctg ctgcatggcg ctcaaggccc cctgcgttcc cctgatccag
     2521 ccgacaccct cgcggtagac ggagaggtcg ttcgaggcga ggctcggcac ggtgggcgca
     2581 aggctcgcgg gcagggcgag ggcggccgc
//
LOCUS       DASQWN010000205         2473 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_116732, whole genome shotgun sequence.
ACCESSION   DASQWN010000205 DASQWN010000000
VERSION     DASQWN010000205.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2473)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2473)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2473
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_116732"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(64..1335)
                     /locus_tag="VE686_03830"
     CDS             complement(64..1335)
                     /locus_tag="VE686_03830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003579950.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="epoxide hydrolase"
                     /protein_id="HYY83615.1"
                     /translation="MSAASPTRRGLLATSAASGAVGLLFARPAAADSNAIRLFRVSVP
                     EEELADLRRRVLATRWPDRETVGGRSQGVQLAKLQELVRHWGTGYDWRKAEARLNALP
                     QFVTGIDGLDIHFIHVRSPRADALPLVMTHGWPGSVFELLKTVGPLTDPAAHGGRAED
                     AFHLVLPSMPGYGFSGKPTGTGWNPERIARAWAELMRRLGYTRYVAQGGDWGSPVSNA
                     MARLAPAGLLGIHVNLPAVIPSEIAAALASGGPAPAGLSEKERAAFDSLDRFYKKHRA
                     YAAMMGTRPQTIGYALTDTPAGLAAWMYDYNNGEPERLLPRDEMLDDITLYWLTNSAA
                     SSARLYWETSGQSVLLAAAQKTAEISLPVAVTVFPEEVYRAPETWARRAYRNLVYFNE
                     AEKGGHFAAWEQPGLFAAELRAAFRPLRPAH"
     gene            complement(1426..2473)
                     /locus_tag="VE686_03835"
                     /pseudo
     CDS             complement(1426..2473)
                     /locus_tag="VE686_03835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012556071.1"
                     /note="internal stop; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=2
                     /transl_table=11
                     /product="alpha/beta fold hydrolase"
BASE COUNT          377 a          813 c          866 g          417 t
ORIGIN      
        1 cagcaccgcc accgccagga ttcgcgtcgt tttcatgcgg atcgccttcc gaatggaagc
       61 tgatcagtgt gccggccgaa gcggtctgaa ggcggcgcgg agttcggcgg cgaagagccc
      121 gggctgctcc caggccgcga agtgcccgcc cttctcggcc tcgttgaagt agaccaggtt
      181 gcggtaggcg cgccgggccc acgtctccgg ggcccggtag acctcctccg gaaacaccgt
      241 gacggccacc gggagcgaga tctcggcggt cttctgcgcc gccgcgagaa gcacgctctg
      301 gccgctggtc tcccagtaca gccgagccga cgaggctgcg ctgttcgtca gccagtacag
      361 cgtgatgtcg tccagcatct cgtccctggg gagcaggcgc tcgggctcgc cgttgttgta
      421 gtcgtacatc caggccgcga gcccggccgg agtatccgtc aaggcgtagc cgatcgtctg
      481 cggccgcgtg cccatcatcg ccgcgtaagc cctgtgcttc ttgtagaacc tgtcgagcga
      541 gtcgaacgcc gcgcgttcct tctcggaaag ccccgcgggc gcgggcccgc ccgaagcgag
      601 cgccgcggcg atttcagacg ggatcaccgc cggcaggttg acgtggatgc cgagcaggcc
      661 ggctggcgct aggcgcgcca tcgcgttcga gacgggggag ccccagtcgc cgccctgcgc
      721 gacgtagcgt gtgtagccga ggcgtctcat caactcggcc caggcgcgcg cgatgcgctc
      781 ggggttccag cccgtgcccg tcggcttgcc ggagaagccg tagcccggca tcgacggcag
      841 gacgaggtgg aacgcgtcct ccgcgcgtcc gccatgggcc gcgggatccg tgagcggacc
      901 gacggtcttg agcagctcga acacggagcc gggccagccg tgcgtcatga ccagcggcag
      961 ggcatctgcg cggggcgagc ggacgtggat gaagtggatg tcgagcccgt cgatcccggt
     1021 cacgaactgc gggagggcgt tcagcctcgc ctctgccttg cgccagtcgt acccggtccc
     1081 ccagtggcgg acgagctcct gcagcttggc gagctgtacg ccttgcgacc ggccgccgac
     1141 cgtctctcgg tcgggccacc gcgtcgccag cacgcgcctg cgaaggtccg cgagttcctc
     1201 ctcgggcacg ctgacgcgga agaggcggat cgcattgctg tcagcggcag ccgggcgcgc
     1261 aaacaacagg ccgacggcac ccgaggctgc ggatgtggca agaaggcctc gtcgcgtcgg
     1321 cgatgctgcg gacatggcat tctcctccgt cgcttgcatc ccttgatcgg cctcgagatc
     1381 gtgacgcggc acggacctcg ggcgcgagga gctcctgctc tcgggtcagc gcagggatcg
     1441 gaacgcggcg cggagctcgg acacgaagag tcccggctgt tcccaggccg cgaaatgccc
     1501 gcccttctct gctcggttgt attagatgag tttgggatag gcccgttcgg tccaactccg
     1561 cggagcctcg tattgctcgc cggggaagac ggtcaccgcc accggcgtct tgacgccttt
     1621 ggcgtcgaag aagccgccct tgtattccca gtagagacga gaggcggaga cacccgtgtt
     1681 cgtcagccag taaagcgtga tgttgtcgag gatctcgtcc cgcgtcagtt cgcccgtggc
     1741 actgctcgtc cgggtgaggg cggtggcgac cgccgccgcc ggctggccgt cagcgtcatt
     1801 gtggtcgaga agccaagcgg cgaggccgat gggcgaatcc gcgattccgt acaaggtttg
     1861 cgggcgagac cccatcagct ttgcgtagtc gacttgcttg aatgtcctga ccagttgccc
     1921 gtaggcacgg gtttcctcgg ccgagagacc cggtggcggc gggtttccgg ccaggagcga
     1981 cttgttgacg tcggccggaa cggtggcagg catgttggtg tggatgccga tcaatcccgg
     2041 agacgcctgc agacccatct gatcgacgac gaacgcgccc cagtcgccgc cctgggcgac
     2101 atagcggctg tagccgaggc gcttcatcag ctccgcccag gcgcgggcca tccgctcggg
     2161 gccccagccg gtgctcgtcg gcttgccgga gaagccgtag ccgggcatcg aagggatgac
     2221 gacatggaag gcgtccgctg cgctcgcccc atgcgccgtg ggatcggcga gcgggtcgat
     2281 gatcttcagc tgctcgatga tcgagccggg ccatccgtgc gtgacgatga gcggcagcgc
     2341 ctgctcatgt ttcgaacgga cgtggacgaa gtggatgtcc agcccgtcga tctcggtgat
     2401 gaactgcggt agcgcgttca gcttcgcctc gaccttgcgc cagtcgtaat ccgtcgccca
     2461 atggcgcgcg agt
//
LOCUS       DASQWN010000206         4622 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_116767, whole genome shotgun sequence.
ACCESSION   DASQWN010000206 DASQWN010000000
VERSION     DASQWN010000206.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 4622)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4622)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4622
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_116767"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..537
                     /locus_tag="VE686_03840"
     CDS             <1..537
                     /locus_tag="VE686_03840"
                     /inference="COORDINATES: protein motif:HMM:NF012694.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system F family protein"
                     /protein_id="HYY83616.1"
                     /translation="TTLWSVGLGICGYFLPNMVLSRIINKRVLQHRMGFPDFMDLMVV
                     CAEAGLTMEASIDRIARELVDGYPSLAENLYMASLEIRAGKPFTEALERLGKRLGIDE
                     ATMLATLLQQSAELGTSLSQSLRVYSDEMRHKRMSRAEEKAHALPSKLVIPLTLFVFP
                     VLLVTLLYPAVIRVMGAF"
     gene            complement(586..1212)
                     /locus_tag="VE686_03845"
     CDS             complement(586..1212)
                     /locus_tag="VE686_03845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012254290.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospholipid methyltransferase"
                     /protein_id="HYY83617.1"
                     /translation="MLEALQRRGPRKLQPRERFEDETRFLRSWLERPLVTGALTPSGK
                     MLARAMASYVDPRVPGPVIELGPGTGPVTDALIRRGIAQDRLVLVEYNPEFCRLLARR
                     FPKATIVQGDAYDLGATLEGALEDPACATLSSLPLLTKPPPQRLELLRASQALMHPNA
                     PFVQFTYGVAPPIPARSRDYTVMGSNRVWLNLPPARVWVYRRHAGGAA"
     gene            complement(1268..2404)
                     /gene="dnaJ"
                     /locus_tag="VE686_03850"
     CDS             complement(1268..2404)
                     /gene="dnaJ"
                     /locus_tag="VE686_03850"
                     /EC_number="1.8.4.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012335915.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_process: GO:0006457 - protein folding [Evidence IEA];
                     GO_process: GO:0009408 - response to heat [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone DnaJ"
                     /protein_id="HYY83618.1"
                     /translation="MSKRDYYEVLGVAKTATEAELKSAFRKLAMKYHPDRNPGDKDAE
                     IHFKELNEAYQCLSDGQKRAAYDRFGHAAFSQGAGGPGFGADFTDFMSDIFDNFFGDS
                     RGRGRASGGRERGADLRYNLEITLEEAYEGKTATITIPTSLSCEQCGGSGAKPGSKPK
                     TCPTCAGHGRVRATQGFFSIERTCPNCHGRGETIDDPCPQCSGAGRVTRERTLSVNVP
                     AGVEDGTRIRLAGEGEAGVRGGPTGDLYIFLSIKPHAFFQRDGADLFCRVPISLVTAA
                     LGGEFTVPSLDGADAKVKVPEGTQTGKQFRLRGKGMPVLRSRDVGDLYIQVVVETPQA
                     LTKRQRELLLEFERESSRDTHPESAGFFSRVREFFDGLGGSTRA"
     gene            complement(2527..4449)
                     /gene="dnaK"
                     /locus_tag="VE686_03855"
     CDS             complement(2527..4449)
                     /gene="dnaK"
                     /locus_tag="VE686_03855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015823233.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006457 - protein folding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone DnaK"
                     /protein_id="HYY83619.1"
                     /translation="MGKVIGIDLGTTNSCVAVMEGATPKVIENAEGARTTPSIVAFTD
                     DGERLVGQPAKRQAVTNPSRTFFAIKRLIGRTFDDPMTKKDMGLVPYQIIKGANGDAW
                     VEADGKQYSPSQISAFTLQKMKETAEAYLGQPVTQAVITVPAYFNDAQRQATKDAGKI
                     AGLEVMRIINEPTAAALAYGLDKKKAGVIAVYDLGGGTFDVSILEIGDGVFEVKSTNG
                     DTFLGGEDFDMRLVEYLAAEFKKEQGIDLTKDKLALQRLKEAAEKAKIELSSATQTEI
                     NLPYITADASGPKHLAMKLSRAKFESLVDDLVQKTIEPCRKALKDAGLSAGEIDEVVL
                     VGGMTRMPKIQDVVKQFFGKEPHKGVNPDEVVAIGAAIQAGVLQGDVKDVLLLDVTPL
                     SLGIETLGGVFTRLIDRNTTIPTKKSQVFSTAEDNQNAVTIRVFQGEREMAADNKLLG
                     QFDLMGIPPAPRGVPQVEVTFDIDANGIVNVTAKDKATNKEQQIRIQASGGLSEADID
                     KMVKDAEAHAAEDKKRRELVESKNQGESLIHQTEKSVQEHGDKVQEADKQAIQTAIDA
                     LRQALAGEDAEVIKSRTTDLMQASMKLGQAIYEASQAQEGGDGEGQPGAGTEAKKDDV
                     IDADFQEVDEDKKKRA"
BASE COUNT          678 a         1556 c         1545 g          843 t
ORIGIN      
        1 acgacgctct ggtccgtcgg cctcggcatc tgcggctact tcctgccgaa catggtgctg
       61 tcccgcatca tcaacaaacg cgtgctgcag caccggatgg gctttcccga cttcatggac
      121 ctgatggtgg tctgcgccga ggccgggctc accatggagg cctcgatcga ccgcatcgcg
      181 cgcgagctcg tcgacggcta tccatcgctc gccgagaacc tctacatggc ctccctcgag
      241 atccgcgccg gcaagccgtt cacggaggcg ctcgagcggc tcggcaagcg cctcggcatc
      301 gacgaggcga ccatgctcgc gacgctgctg cagcagtcgg cggagctcgg caccagcctg
      361 tcgcaatcgc tgagggtgta ctcggacgag atgcgccaca agcgcatgtc gcgggctgag
      421 gagaaggcgc acgcgttgcc ctcgaagctc gtcatcccgc tgacgctgtt cgtcttcccg
      481 gtccttctgg tgacgctcct ctatcccgcg gtcatccgcg tcatgggagc cttctgatgg
      541 ggagcgcgca acgcccagag caatctcggc gcgttcgggc cgaccttaag ccgcgcctcc
      601 cgcgtggcgc cggtacaccc acacgcgggc cgggggcaga ttgagccaca cccggttcga
      661 ccccatcacc gtgtagtccc gcgagcgcgc cgggattggc ggggcgacgc cgtaggtgaa
      721 ctgcacgaag ggcgcgttgg gatgcatcag cgcctgggag gcccgcagga gttcgagcct
      781 ctgcggcggc ggcttggtga ggaggggcag gctggacagc gtcgcgcagg cgggatcctc
      841 gagagcgccc tcgagggttg ccccgagatc gtaggcatcc ccctggacga tggtggcttt
      901 cgggaaccgg cgcgcgagaa ggcggcagaa ctccggattg tactccacga gaaccagccg
      961 gtcctgcgcg atgccgcgcc ggatcagcgc gtccgtcacc gggccggtgc ccgggccaag
     1021 ctcgatgacg ggcccgggca cgcggggatc gacgtaggac gccatcgcgc gggccagcat
     1081 cttgccggag ggcgtgagag caccggtgac cagcggccgc tcgagccatg agcgcaggaa
     1141 tcgcgtctcg tcctcgaacc gctcgcgcgg ctgcagcttt cgcgggccac gccgctgtag
     1201 tgcttcgagc acgattgacc ccctgggcgg tttgcctgcc acgaacgcca gacctcgata
     1261 acggcgatca cgcccgcgtt gatccaccaa gcccgtcgaa gaattcacgc acgcgggaga
     1321 aaaatccagc gctttcggga tgtgtatccc gagaagattc gcgctcgaac tcgagcagca
     1381 gttcgcgctg gcgtttcgtg agcgcctgcg gcgtctctac cacgacctgg atgtagaggt
     1441 caccgacgtc gcgcgaccgc agcaccggca tgcccttgcc gcgcaggcgg aactgcttgc
     1501 cggtctgggt cccttccgga accttcacct tcgcgtccgc gccgtcgagg ctcggaacgg
     1561 tgaactcgcc cccgagcgcc gccgtcacga gcgatatcgg cacgcggcag aacaggtccg
     1621 ccccgtcgcg ctggaagaac gcgtgcggct tgatggagag gaaaatgtag aggtcgcccg
     1681 tcgggccgcc gcgcacgccc gcctcgcctt ccccggcaag gcggatgcgg gtgccgtcct
     1741 cgaccccggc ggggacgttg acggagagcg tgcgctcgcg ggtgacgcgg ccggctccgc
     1801 tgcactgcgg gcacggatcg tcgatggtct cgccgcgacc gtgacaattg ggacaggtgc
     1861 gctcgatcga gaagaaaccc tgcgtggcgc gcacgcggcc atggccggcg caggtcgggc
     1921 aggtcttcgg cttcgagccg ggctttgcgc ccgatccccc gcactgctcg cagctgagcg
     1981 aggtcgggat ggtgatggtg gcggtcttgc cctcgtaggc ctcctcgagg gtgatctcga
     2041 ggttgtagcg caggtccgcg ccgcgctcgc gcccacccga cgcccgaccg cgcccgcggg
     2101 agtcgccgaa gaagttgtcg aagatgtccg acatgaagtc ggtgaaatcg gcaccaaagc
     2161 cgggcccgcc ggcaccctgc gagaaggcgg cgtggccgaa gcggtcgtag gcagcccgct
     2221 tctgcccgtc cgagaggcac tgataagcct cgttcagctc cttgaagtgg atctccgcat
     2281 ccttgtcgcc gggattgcgg tcggggtgat acttcatcgc cagcttgcgg aacgcggact
     2341 tcagctccgc ctccgtcgcc gtcttggcga cacccaggac ctcatagtag tcgcgcttcg
     2401 acatccgcgc cccagcccct acccctgata cgcgtcatcc ccgggctcgg cccggggatc
     2461 caatgacatg gaggcactct cataacgaga tggccgggtc gagcccggcc atcgaggcgt
     2521 cgagagctac gcccgcttct tcttgtcctc gtccacttcc tggaagtcgg cgtcgatgac
     2581 gtcgtccttc ttcgcctcgg ttccggctcc gggctgaccc tccccatcgc cgccctcttg
     2641 cgcctgggac gcctcgtaga tcgcctgccc gagcttcatg gaggcctgca tcaggtccgt
     2701 ggtgcgggac ttgatgacct cggcgtcctc gccagcgagc gcctggcgca gagcgtcgat
     2761 ggcggtctgg atcgcctgct tgtcggcctc ctggaccttg tcgccgtgct cctggaccga
     2821 cttctcggtc tggtggatca ggctctcgcc ctggttcttc gactcgacga gctcgcgccg
     2881 cttcttgtcc tcggccgcgt gcgcctcggc atccttcacc atcttgtcga tgtcggcttc
     2941 cgagaggccg cccgaggcct ggatgcggat ctgctgctcc ttgttggtgg ccttgtcctt
     3001 cgccgtgacg ttgacgatgc cgttggcgtc gatgtcgaag gtgacctcga cctgtggcac
     3061 gccgcgcggt gccggcggga tgcccatcag gtcgaactgg ccgagcagct tgttgtcggc
     3121 cgccatctcg cgctcgccct ggaagacccg gatcgtgacg gcgttctggt tgtcctccgc
     3181 cgtcgagaag acctggctct tcttggtcgg gatcgtcgtg ttgcggtcga tgagccgcgt
     3241 gaacacgccg cctagcgtct cgatgccgag cgagagcggg gtcacgtcga gcagcagcac
     3301 gtccttgacg tcgccctgca gcacgcccgc ctggatcgcc gcgccgatcg ccaccacctc
     3361 gtcggggttg acgcccttgt gcggctcctt gccgaagaac tgcttcacga cgtcctggat
     3421 cttcggcatg cgggtcatgc cgccgaccag cacaacctcg tcgatctcgc ccgccgacag
     3481 gcccgcgtcc ttgagggcct tgcggcacgg ctcgatcgtc ttctgcacga ggtcgtcgac
     3541 gaggctctcg aatttggccc gcgagagctt catggcgagg tgcttcggac cgctcgcgtc
     3601 ggccgtgatg tagggcaggt tgatctcggt ctgggtcgcc gacgagagct cgatcttggc
     3661 cttctcggcc gcctccttga ggcgctgcag cgcgagcttg tccttcgtca ggtcgatgcc
     3721 ctgctccttc ttgaactcgg ccgcgaggta ctcgacgagg cgcatgtcga agtcttcgcc
     3781 acccaggaag gtgtcgccgt tcgtggactt cacctcgaac acgccgtcgc cgatctctag
     3841 gatcgacacg tcgaaggtgc cgccgccgag gtcgtagacg gcgatgacgc cggccttttt
     3901 cttgtccagg ccgtaggcga gcgccgccgc ggtcggctcg ttgatgatgc gcatcacctc
     3961 gagcccggcg atcttgccgg cgtccttggt ggcctggcgc tgggcgtcgt tgaagtaggc
     4021 cggaacggtg atcacggcct gcgtgaccgg ctggccgaga taggcctccg cggtctcctt
     4081 catcttctgc agcgtgaagg ccgagatctg cgacggcgag tactgcttgc cgtccgcctc
     4141 cacccaggcg tcgccgttgg cgcccttgat gatctgatag gggacgaggc ccatgtcctt
     4201 cttggtcatg ggatcgtcga aggtgcgccc gatcaggcgc ttgatggcga agaaggtgcg
     4261 cgacggattg gtcaccgcct ggcgcttggc gggctgcccg acgaggcgct cgccgtcgtc
     4321 cgtgaaggcg acgatcgacg gggtcgtgcg cgcgccttcc gcattttcga tgaccttcgg
     4381 cgtcgcgcct tccatgacgg cgacgcagga gttggtggtg ccgaggtcga taccgataac
     4441 tttacccatg gcgggatccc tcactttcaa gcagaccgcc gagtcccgaa gcaactcggc
     4501 ccatggctga caacagacag gtttcaacgg ggccgatcga gggtccgacc gggggagagg
     4561 cgacgccttg cggtcgtgcc ccgttcaggg cgggatataa gaaggggcct cagggcctgc
     4621 aa
//
LOCUS       DASQWN010000207         3672 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_730129, whole genome shotgun sequence.
ACCESSION   DASQWN010000207 DASQWN010000000
VERSION     DASQWN010000207.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 3672)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3672)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3672
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_730129"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            697..960
                     /locus_tag="VE686_03860"
     CDS             697..960
                     /locus_tag="VE686_03860"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY83620.1"
                     /translation="MTATRALLAALMLLALAAPGAAKECAGAKSGPGAAERRACAPRD
                     LHGLKPYDPRDERRPEPGVINLGNGTTVRVRGSVSMEADVVRR"
     gene            1036..1413
                     /locus_tag="VE686_03865"
     CDS             1036..1413
                     /locus_tag="VE686_03865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009492655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY83621.1"
                     /translation="MLLAASEGRHWRYEVCEHADGYLVQMRDLQTGDLDDDFATLFRT
                     LPVAFAYADMSAALERYAAAEMEEGDALATSRWGTDIAVHLEATERSFISLSNRLQDD
                     GIDSGAIKAWERARQKPQRPRYH"
     gene            1501..2247
                     /locus_tag="VE686_03870"
     CDS             1501..2247
                     /locus_tag="VE686_03870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013166305.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VWA domain-containing protein"
                     /protein_id="HYY83622.1"
                     /translation="MTDKKDVSHAPPGGAIARSAGTMVDSFLKQANRLGPVAGTAARP
                     RLVFALDATMSRQPTWDLACRVQSEMFEATSKIGGLSVQLVYFRGFDECRASRFVVEP
                     RALTDLMAKIDCRGGQTQIGRVLRHVRDEAGRAPVKALVYVGDAMEEPIDDVCAAAGE
                     LGLVGVKAFMFHEGHDPVAGGAFQEIARLTGGAYARFDASAPGALANLMRAAAAYASG
                     GIAALQHLAASDGKARALLTSMQTPNARRS"
     gene            2244..2957
                     /locus_tag="VE686_03875"
     CDS             2244..2957
                     /locus_tag="VE686_03875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019403513.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DnaJ domain-containing protein"
                     /protein_id="HYY83623.1"
                     /translation="MITLLYGAGVLVVLWWLSKTFATTNPTALAKGIRIAGGVAALGV
                     AALLGLRGRIDMAFLVGGAGAWLLGWNGLPIRGFGSRTAKQPGAVSRVRSAMIEMELD
                     HDTGDMDGSVLAGPKAGRTLASLSELELKLIYDECAAADPDGVRLLEAYLDRRFAGWR
                     KDADRDRDAGPLRDPAPGAMTEQEAYQILGLEPGTGVDEIRQAHRTLMKKLHPDQGGS
                     TYLASRVNQAKDILLSRHR"
     gene            complement(3030..>3672)
                     /locus_tag="VE686_03880"
     CDS             complement(3030..>3672)
                     /locus_tag="VE686_03880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019905126.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042834 - peptidoglycan binding [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="SPOR domain-containing protein"
                     /protein_id="HYY83624.1"
                     /translation="APRPAARPDVETTATTTPAKPARGPLELAGMRPVVASAAGAAST
                     TTPSALGWRTGPQPVPQAAQGYAALESDSRFAPSASPTAPAPLLGAKLDVRLPETVIP
                     KAPEPRVADAPQPQARPQTARAEIVIRPPVSAWVIQLGAMDDEDKAKSMLDEAKSRSG
                     RALAHAAPFTEKVVRDGATLYRARFSGFQEPDSAQEACKTLKRSGFNCFATRS"
BASE COUNT          505 a         1286 c         1333 g          548 t
ORIGIN      
        1 ttctctgttt gtgctcgttt gtcgccgtcc cgcccggcaa ggggtgcttc cggaggtgtc
       61 tggttgcagg gcggcatcgg cgagcgaggg ttcggctggc gacagctgga tctgagcgag
      121 gcggtggtct taaggagcga agccgagagg ttcaagctcc gaagggctga tgcggtgtcc
      181 gggccgcggg ggtcacgtcc cgtggtccag gtccttaccg acgaccggga tcggcgcggc
      241 tgccaggcgc gtccccggga ggcggggtcc cgtccgtcct ctccggggcg gacctcgggc
      301 cggttctgcg cctcgtgggt tcgtccccgg gatgcggttt cgatccgagg tcgactaccg
      361 agagaggtcc gcgcgcaagc gcttgaggcg ctcgggaggc agccctcgct cgcagcgccg
      421 aagcgcggga ccagggatca aaggcatcgc ggtgcgaggc gcggccgacc tcatgcgggg
      481 ccggcctgcc tgcctgtttc cgcccggcct cgcggccggg gccgaccgcg cctcgcgccc
      541 cctctttctt ttcaagagga cgcgccaagc gaagggccga acccccgagc cgggaggctg
      601 cgggggctgt agccgcttcg tgcacgctgc tggcaagcgg ccgaggtgca ttgtgataga
      661 aggtgcgaga tgcccgcgtc tgctcaggtg tctatcgtga ctgccacacg tgctttgctt
      721 gccgcgctca tgctgctggc gcttgcggcg ccgggagccg cgaaggagtg cgccggcgca
      781 aagagcggcc ccggcgccgc cgagcgccgg gcatgtgcgc cacgagatct gcatggcctc
      841 aagccctacg atccccgtga cgagcggcgg cccgagcccg gcgtcataaa cctcggcaac
      901 ggcaccaccg tgcgcgtgcg cgggtcggtc agcatggaag cggacgtggt ccgccgttga
      961 ccatcgcgcg aagcttcgcc ggaaccgggg tcccgcgatg cgcatttggc tctcaggtaa
     1021 gttgtggagg gtgcgatgct gttggcggct tccgaaggcc ggcattggcg ctatgaggtt
     1081 tgcgagcatg ccgacggcta cctcgtccag atgcgcgacc tccagaccgg cgacctcgac
     1141 gacgacttcg ccaccctgtt ccggaccttg cccgtggcct ttgcctacgc cgacatgtcg
     1201 gcggcgctcg agcgctatgc cgccgccgag atggaggagg gcgacgctct tgccacctcg
     1261 cgctggggca ccgacatcgc cgtccatctc gaagcgacgg agcgcagctt catctcgctg
     1321 agcaaccgtc tgcaggacga cggcatcgac agcggcgcca tcaaggcctg ggagcgcgcc
     1381 cggcagaagc cgcagcgccc gcgctaccat tgacggccgc aagcctcgcc tgagccgcgg
     1441 cgaagcggca gcgttgcaag gccccgccct ctccccacat catgggcagg ggacaagggc
     1501 atgaccgaca agaaggacgt atcgcacgca ccccccggcg gggccatcgc ccgctcggcc
     1561 gggacgatgg ttgattcgtt cctgaagcag gcaaaccgcc tcggtcccgt cgccggcacg
     1621 gccgcgcggc cgcgcctcgt gttcgcgctc gacgccacca tgagccggca gccgacctgg
     1681 gacctcgcct gccgggtcca gagcgagatg ttcgaggcga cgtcgaagat cggcgggctc
     1741 tcggtccaac tcgtgtactt ccgcggcttc gacgagtgcc gcgcctcgcg cttcgtcgtc
     1801 gagccccggg cgctgacgga cctcatggcg aaaatcgact gccgcggcgg ccagactcag
     1861 atcggccgcg tgctgcgtca cgtccgcgac gaggccgggc gcgcgcccgt gaaggccctc
     1921 gtctacgtcg gagacgccat ggaggagccg atcgacgatg tctgcgccgc cgcgggcgag
     1981 ctcggactcg tgggcgtcaa agcgttcatg ttccacgagg ggcatgaccc ggttgcgggc
     2041 ggcgcgttcc aggagatcgc gcgcctcacc ggcggcgcct acgcccgctt cgacgcgagc
     2101 gcgcccggcg ccctcgccaa cctcatgcgc gccgcggcgg cctacgcgtc cggcgggatc
     2161 gctgccctcc agcacctggc cgccagcgac ggcaaggcac gggcgctcct cacctcgatg
     2221 cagaccccga acgcgcgccg ctcatgatca ccctgttgta cggcgcgggc gtcctcgtgg
     2281 tcctgtggtg gctgtcgaag accttcgcca ccaccaatcc caccgcgctc gccaagggca
     2341 tccggatcgc gggcggcgtc gccgctctcg gggtggcggc gctcctcggc ctgcgcggcc
     2401 gcatcgacat ggcgttcctc gtcggcggag ccggggcgtg gctgctcggc tggaacggcc
     2461 tgccgatccg cggcttcggc tcgcgcacgg cgaaacagcc cggtgccgtg tcgcgggtgc
     2521 gctcggctat gatcgagatg gagctcgacc atgacaccgg ggacatggac gggagcgtgc
     2581 ttgcgggccc caaggcgggc cggacgctcg cgagcctgtc cgagctcgag ctgaagctca
     2641 tctacgacga gtgtgccgcc gccgaccccg acggcgtgcg cctgctagag gcgtatctcg
     2701 accgccggtt tgccggctgg cgtaaagacg ctgaccgaga tcgcgacgcg gggccgctcc
     2761 gcgaccctgc gccaggcgcg atgaccgagc aggaggccta ccagatcctg gggcttgagc
     2821 cgggcacggg cgtcgatgag atccgccagg ctcaccggac gctgatgaag aagctccacc
     2881 ccgaccaggg gggctcgacg tacctggcgt cccgcgtcaa ccaggccaag gacatcctgc
     2941 ttagccgaca tcgctgatac tccacaaagc gatccggcga acggccggcg gcggtcgtct
     3001 cgggcgcggc gcatcgcgcc gctgccccgt cagctccgcg ttgcgaagca gttgaagccg
     3061 ctccgcttca gggtcttgca ggcctcctgc gccgaatcgg gctcctggaa gcccgagaac
     3121 cgggcgcggt acagagtggc gccgtcccgg acgaccttct cggtgaacgg cgcggcatgg
     3181 gcgagcgccc ggcccgagcg cgacttcgcc tcgtcgagca tcgacttcgc cttgtcctcg
     3241 tcatccatgg cgccgagctg gatcacccag gccgacacgg gaggacggat gacgatctcg
     3301 gcccgggcgg tttgggggcg ggcctgcggc tgcggcgcgt cggcgaccct cggctccggg
     3361 gctttcggga tgactgtctc gggcaggcgc acgtcgagct tcgccccgag gagcggggct
     3421 ggtgccgtgg gagacgccga cggcgcgaag cgggagtcgc tctcgagcgc cgcgtagccc
     3481 tgagccgcct gcgggaccgg ctgcggaccc gtgcgccacc cgagcgcgct cggcgtggtg
     3541 gtcgaggcgg cgccggcggc tgacgccacc accgggcgca tgccggccag ttcgagcggg
     3601 ccgcgggcag gttttgcggg ggtggtcgtg gcggtcgtct cgacgtccgg cctcgccgcc
     3661 gggcgcggcg cc
//
LOCUS       DASQWN010000208         2513 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1326423, whole genome shotgun sequence.
ACCESSION   DASQWN010000208 DASQWN010000000
VERSION     DASQWN010000208.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2513)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2513)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2513
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1326423"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(75..551)
                     /locus_tag="VE686_03885"
                     /pseudo
     CDS             complement(75..551)
                     /locus_tag="VE686_03885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011084489.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS6 family transposase"
     gene            698..2347
                     /locus_tag="VE686_03890"
     CDS             698..2347
                     /locus_tag="VE686_03890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015933337.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IS1182 family transposase"
                     /protein_id="HYY83625.1"
                     /translation="MSLHPMPIGEIPNETMRVARAAFPKGTLATRLRDEFADLFEDAD
                     FHALYPSRGQPGLAPWRLALVTVFQFVEQLSDRRAADAVRARIDWKYALGLELTDPGF
                     HFSVLAEFRARLVAGRAEHLLLDKMLERFKQRGLVKARGKQRTDSTHVLAAVHDLHLL
                     ELVVETLRATLDDLAAVVPDWLRTTSPPAWFERYGRRVEEYRLPKGQEKREAFALAVG
                     EDGFLLLAALDGPTVPAAAREVPMVRTLREVWRVHYAHEAGRLRWRSAAELPSVAERI
                     QSPYDPEAHFSIKRQLHWTGYKVHVTETCDDDMAQVITDVTTCPSMRPDMTSTAGIHE
                     RLAAKGLLPAEHFVDSGYVDAELLASSQRDHGLSLEGPVRGVSSRQIRAGQGYSLPHF
                     RINWDDQQVTCPQGKTSIYWRPLRLPDGSLRIQVQFSRSDCAACAARTECASPKAARR
                     VMQFHHREEFEALRAARARTNDPAWLERYHKRAGVEGTLSQGVRAFGMRQSRYIGLAK
                     TGLQETCTAVAMNVSRVIRWLDGVPRAKTRTTRFAALAQPV"
     gene            2363..2513
                     /locus_tag="VE686_03895"
                     /pseudo
     CDS             2363..2513
                     /locus_tag="VE686_03895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012650495.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing N-terminus and C-terminus; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DDE-type integrase/transposase/recombinase"
BASE COUNT          434 a          761 c          845 g          473 t
ORIGIN      
        1 gatctcgggg caccgtcaac ttatgcatct gtagtcgagg cgatacgcgc agcctgggta
       61 aggcgccctg acagttatgc tgaagcggcc acgccggtga tctcggccca gatctgaaag
      121 gcccgggccc gggcggctcg atactgatcg gcagggacgt gatcgcggcg gaggtagaag
      181 agattgttga tctgatcgtg ggcggagagg aaacgctgtg cctgccgcgc cgacttgaat
      241 cgcttcatct gccgctcgcg tcgtcgtgtc ggctgatgcg aattctcagc tcggttattc
      301 aggcccttgt gctgccggtg ctcgatgctg ggcgtgatct ccttcttcgc ggccccatag
      361 ctggccagct tgtcggtgat caggacccgt agtgggcgcc gctgcttctt cagcagcttg
      421 cgcaggagcc gtttggcggc ccgtttgtcc cgccggctct gcaccaggat gtcgagcacg
      481 atgccgtcct ggtcgaccgc gcgccacagc caatgcttta ccccggcgat tttgatgacg
      541 acgtgatact gtcggcgaat tccgaagtgt tggatttgtt tacagtgccg gtttcgagcg
      601 ccgatctctg ggagcgatac aagtctgcgg atattggcgt ggcactttgg accgccagac
      661 gggttgcagg atcgaaaacg agttgcaaag cttcttcatg agcttgcacc cgatgccgat
      721 aggcgagatc ccgaacgaga cgatgcgggt ggcccgggct gcctttccca aaggcacact
      781 ggcgacgcga ttgcgcgacg agttcgccga cctgttcgag gatgccgact ttcacgcgct
      841 gtacccgagc cggggccaac ccggcctcgc gccatggcgg ctagccctgg tgactgtgtt
      901 ccaatttgtt gagcagctca gcgaccgtcg ggccgctgat gcggtgcggg ctcgcatcga
      961 ctggaagtac gcgctcggtc tcgagctgac cgacccgggt ttccacttca gcgtattggc
     1021 ggagtttcgt gcccgcctag tggcgggccg ggcggagcac ttgctgctcg acaagatgct
     1081 cgagcggttc aagcaacgcg gcctggtcaa agcacgtggc aagcagcgca ccgacagcac
     1141 gcacgtgctg gcggcggtgc atgatctgca tctcttggag cttgtggtcg aaacgcttcg
     1201 cgccaccctc gacgacctag ccgcggtcgt gccggattgg ctgcgtacga cctcgccgcc
     1261 ggcctggttt gagcgctacg gacgtcgcgt cgaggaatac cgcctgccca aggggcagga
     1321 aaagcgtgag gctttcgccc tggcggtcgg ggaagacggc tttctcctcc ttgctgcgct
     1381 cgacggacca accgtaccgg ccgcggcccg agaggtgccg atggtccgga cgctgcgcga
     1441 ggtgtggcgt gtgcactatg cgcacgaggc cgggcggctg cgctggcgat ccgcggcgga
     1501 gctgccgtca gtggccgagc ggatccagtc gccatacgac ccggaggcgc atttcagcat
     1561 aaagcggcag ctccactgga cggggtacaa ggtgcacgtg acggagacgt gcgacgatga
     1621 catggcccag gtgataactg acgtgacaac gtgcccatcg atgcggcccg atatgacaag
     1681 cacggccggc attcacgagc gattggcagc caagggcctg ctccctgcgg agcatttcgt
     1741 cgattccggc tatgtggacg cggagctgct cgccagcagc cagcgggacc atggtctttc
     1801 gctcgagggg ccggtccggg gcgtgtcaag ccgacagatc cgcgccgggc aaggctacag
     1861 cctgccgcac tttaggatca attgggacga tcagcaggtg acctgcccgc agggcaagac
     1921 atcaatttac tggcgtcccc tgcgccttcc ggatggcagc ctgcgtatcc aggtccagtt
     1981 cagccgttcg gactgcgcag cgtgtgccgc acgtacagag tgtgcgtcgc cgaaggccgc
     2041 gcgccgggtc atgcagttcc atcaccggga agaattcgag gcactgcgtg cggcgcgggc
     2101 ccgcaccaac gatcctgcct ggctcgagcg ctaccacaag cgggccggag tggaaggcac
     2161 gctctcgcag ggcgtacgcg cctttgggat gcgccagagc cgttatatcg gcttggcaaa
     2221 gacgggcctg caagaaacct gcacggcggt tgcgatgaat gtctcgcgcg tgatccgatg
     2281 gcttgatggt gtgccacgcg ccaagacgcg cacaacccga tttgcggctt tagcgcagcc
     2341 agtctgaatt cgccgacagt atcaagtcgt tctcaagatt gccggggtga aacactggct
     2401 ctggcgcgcc gtagaccagg ccggtgttgt gctcgacgtc ttggtccagc gccgacgcga
     2461 caagcaggcg ccaagcggct gttgcgcaag ctgctgaaga ggcagatgcg gcc
//
LOCUS       DASQWN010000209         2881 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1226971, whole genome shotgun sequence.
ACCESSION   DASQWN010000209 DASQWN010000000
VERSION     DASQWN010000209.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2881)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2881)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2881
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1226971"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1738
                     /locus_tag="VE686_03900"
     CDS             <1..1738
                     /locus_tag="VE686_03900"
                     /inference="COORDINATES: protein motif:HMM:NF024491.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="phospholipase D-like domain-containing protein"
                     /protein_id="HYY83626.1"
                     /translation="TSGPTTLKVYRGEGVALLAFDLDRSAATPDFVGFAVRFRPPGRG
                     DWKVLGNRLHFDYSGDRKSRAFHPTTEAPFQKYRWNHVPREVTAGEYRYEATPMYMAA
                     DGTLRAGSKVETAISLAPQTHEGFLNVGFTRGFASSQAYANDTRFKNGRKILPPKGGG
                     GAKTLDFDMSPFEEHYDWLGFEARRLIYGLLDEVANDDDLRLDALLYEAREGEIVRRL
                     QGLGSRVRAIIDDHGENGDNNSAETLAAKRLTASGAEVERMHFGRQQHNKIFIVKRRV
                     RGGWKPERVLTGSTNFSMRGLYIQANNVLVFDDDRIAGFYGDVFDAYWRNDGTAAFRA
                     SELAGQWHVLRDKPGSRYSFCVSPHADSALSLDPVADAIVNAKSSVLYSMVFLNQLSG
                     PVRDGLDELAQRSIFSYGTAQRVSGLSLEKPDGSRAVLPFAYIASNAPEPFRTEWHGE
                     STGQSNMVHHKFVVTDFNGDEPKVFTGSSNLAAGGERTNGDNLILIEDRRVAISYAIE
                     ALRLFDHFHFRVALREGRSGGAPRRGSAGEGGRDRLTLQKPPENPRERTWFAPYYIAG
                     HVKESDRKLFAG"
     gene            complement(1763..2521)
                     /locus_tag="VE686_03905"
     CDS             complement(1763..2521)
                     /locus_tag="VE686_03905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002711043.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite exporter TauE/SafE family protein"
                     /protein_id="HYY83627.1"
                     /translation="MITDPLFYAAAIPAVVLLGLAKGGFSGLGLLSMPLLSLVLSPVQ
                     AAAIILPILLVQDAVSVWVYRHSWDRRNVMILVPSAILGTGTGYLLAAQVSDAAIRLA
                     VGLIAVGFALRRIVLERRKTPPAPTRSDVPRGIFWGWVTGFTSMIAHAGGPPFQIYVM
                     PQRLQRDIFVGTGAVFFAIMNWIKVPAYGALGQLGSDNLMTAAALFPAAIASTFAGVA
                     LVRRVSPERFYTVVYVLLILVGLKLLWDGARGLF"
     gene            2629..>2881
                     /locus_tag="VE686_03910"
     CDS             2629..>2881
                     /locus_tag="VE686_03910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009763407.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-coenzyme A synthetase N-terminal
                     domain-containing protein"
                     /protein_id="HYY83628.1"
                     /translation="MTSTQSRYHDVYASWKSDPVRFWEEAAREIDWIKPADKVFDAAL
                     GAYGTWFTGALCNTCYNAVDRHAATRGDQTAIIYDSPVTN"
BASE COUNT          557 a          928 c          959 g          437 t
ORIGIN      
        1 tacatcgggg ccgacgacgc tgaaggtcta ccgcggcgaa ggcgtggcgc tcctggcgtt
       61 cgatctcgac aggtccgccg caactcctga cttcgtcggt ttcgccgtgc gtttcaggcc
      121 gcctggccgg ggcgattgga aggtgctcgg gaaccgcctt cacttcgact actcgggcga
      181 ccgcaagagc cgggcattcc atcccacgac ggaggcgccg ttccaaaagt accgctggaa
      241 tcatgtgcct cgggaggtga cggcagggga gtaccgctac gaggcaacgc ccatgtacat
      301 ggcagcggac gggacgcttc gagccggatc aaaggtcgag acggcgatct cgctcgcgcc
      361 gcagacgcac gagggttttc tcaacgtcgg cttcacccgc gggtttgcat cctcgcaggc
      421 ctacgccaac gacacgcgct tcaagaacgg gcgcaagatt cttcctccga agggaggcgg
      481 aggagcgaag acgctcgact tcgacatgtc ccccttcgag gagcactacg attggctcgg
      541 gttcgaggcg cgtaggctta tctacggcct cttggacgag gtcgcgaacg acgatgacct
      601 caggctcgac gctcttctct acgaagctcg cgaaggcgag atcgtgcggc gcctgcaggg
      661 cctggggagc cgtgtacgcg cgatcatcga cgatcatggc gagaacggtg acaacaacag
      721 cgccgagacg ctcgcggcca agcgcttgac cgcgtcaggc gccgaggtcg agcggatgca
      781 cttcgggcgt cagcagcaca acaagatctt catcgtgaag cggcgcgtgc gcggcggatg
      841 gaaacccgag cgcgtcctga ccggctcgac gaacttctcc atgcgaggac tgtatatcca
      901 agccaacaac gttctcgttt tcgacgacga tcgcatcgcc ggcttctacg gggacgtttt
      961 cgacgcatac tggaggaacg acgggacggc ggcgttccgg gccagcgagc ttgccgggca
     1021 atggcacgtg ctgcgcgaca agccgggctc gcgctacagc ttctgcgtct cgccgcatgc
     1081 cgattccgcg ctttcgctcg accccgtggc ggacgccatc gtgaacgcca agagttcggt
     1141 cctgtactcc atggtgttcc tcaaccagct cagcgggcca gtccgcgacg gcctcgacga
     1201 actcgcgcag cggtcgatct tctcgtatgg aacggcgcag cgcgtgtccg gcctgtcgct
     1261 ggaaaagccg gacggatcac gcgccgtgct gcccttcgcc tacatcgcca gcaacgcgcc
     1321 ggagccgttc cggacggagt ggcacggaga gtcgactggc cagagcaaca tggtgcacca
     1381 caagttcgtg gtcaccgact tcaacgggga cgagcccaag gtattcaccg ggtcctccaa
     1441 cctcgccgcc ggcggagagc ggacgaacgg cgacaatctg atcttgatcg aagatcgcag
     1501 ggtcgcaatc agctacgcga tcgaagcgct tcgcctgttc gatcactttc acttccgggt
     1561 cgcgttgcgc gagggacggt cgggtggcgc tcctcgacgc gggtcggccg gcgaaggcgg
     1621 ccgcgacagg ctgaccttgc agaagccgcc cgagaacccg cgcgagagaa cctggttcgc
     1681 cccgtactac atcgccggcc atgtcaagga gagcgatcgc aagctgttcg ctgggtgatc
     1741 gcccgccgcc gtggggacgg gctcagaata ggccgcgggc gccgtcccac aggagcttca
     1801 gcccgacgag gatcaggagg acgtagacga ccgtgtagaa gcgctcgggc gagacgcggc
     1861 gcacgagggc gacgcccgcg aaggtcgagg cgatggcggc cgggaacaat gccgccgccg
     1921 tcatcaggtt gtcggacccg agctggccca gcgccccgta ggccgggacc ttgatccagt
     1981 tcatgatggc gaagaacacc gcgccggtgc ccacgaagat gtcgcgctgc aggcgctggg
     2041 gcatgacgta gatctggaac ggcggcccgc ccgcgtgggc gatcatgctc gtgaagcccg
     2101 tgacccagcc ccagaagatt ccgcggggca catcggagcg cgtgggcgcg ggcggggtct
     2161 tgcggcgctc caggacaatt cggcgcagcg cgaagccgac cgcgatcaac ccgaccgcga
     2221 gcctgatggc cgcgtccgag acctgcgccg ccagaagata gcccgtgccg gtgcccagga
     2281 tggcgctcgg gaccaggatc atgacgttcc gccggtccca ggaatgccga tagacccaca
     2341 cggagacggc gtcctgcacc agcaggatcg gcaggatgat ggccgccgcc tgcaccggcg
     2401 agagcacgag ggagagcagg ggcatggaca aaagcccaag tcccgagaag ccgcccttgg
     2461 cgagcccgag aagcacgacc gccgggatgg cggcggcata gaaaagggga tcggtgatca
     2521 tgaaaacccg cagaaactcg ccgaaagtcg cccctgaccg cggcgcgatt gcctgctacc
     2581 acggcaaggc tttcatgtct catgcggtca gaacaacggg gtaacgccat gacatcaacc
     2641 caaagccgct atcacgacgt ctatgcgagc tggaaatccg atcccgtgcg cttctgggag
     2701 gaggcggcgc gggagatcga ctggatcaag cccgccgaca aggttttcga tgccgctctg
     2761 ggcgcctacg gcacgtggtt caccggcgca ctctgcaaca cctgttacaa cgccgtcgac
     2821 cggcatgcgg cgacccgcgg cgatcagacg gcgatcatct acgacagtcc cgtcacgaac
     2881 t
//
LOCUS       DASQWN010000210         2514 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_37746, whole genome shotgun sequence.
ACCESSION   DASQWN010000210 DASQWN010000000
VERSION     DASQWN010000210.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2514)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2514)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2514
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_37746"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..649)
                     /locus_tag="VE686_03915"
     CDS             complement(<1..649)
                     /locus_tag="VE686_03915"
                     /inference="COORDINATES: protein motif:HMM:NF025123.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter six-transmembrane
                     domain-containing protein"
                     /protein_id="HYY83629.1"
                     /translation="MVQVSDQPVSTALNGARRGSALATLRRFRSRITLTYALTLVEDL
                     LELSYPWATGVAINGLIEHDWTMAIPIVAAWGLRSAIGLARQMYDTRVYTTIYNAVVE
                     DTILRQRRGGVQATSVAARSAMSREFVTFFEKDIPVLVTSIVGIVGSVAILFWYDWII
                     ASLTASIFIPVYLVNRIYLRYTRHGNEGLNNQLELEVDQIEKADASALRHHFEQIR"
     gene            complement(698..1693)
                     /locus_tag="VE686_03920"
     CDS             complement(698..1693)
                     /locus_tag="VE686_03920"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY83630.1"
                     /translation="MLPRRSRTPTGAAIALAFSLVVAGGTAFPYSSLARDESAFADVA
                     AREERGPINHRFDRDLEHLQSRYPVPKDELEIDPRLLVGALKIIVRRAQEVPESARIP
                     SSFGQPLPAGMIAAFRDALERVFRVRLEMPEGTSQALADHLEMQIVAAAGVDYAQYNQ
                     VVPRVAIHRSALYPLLREMLDAQTLKVSINDRCDIPFVAGYSTDARVVYIDRSVPREK
                     SFKGIRVPVAKLLNLHERVEKAILDEFDTSYPHAHQIALRVEKLAAEAIGAPWLPYNA
                     YWSVVADAMDAKPIRQVPRDLDMTPYLTFADPDSRRTVERMRRAFVNPDVCGKPY"
     gene            complement(2134..>2514)
                     /locus_tag="VE686_03925"
     CDS             complement(2134..>2514)
                     /locus_tag="VE686_03925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012334006.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY83631.1"
                     /translation="VRQLQTIDTKITAAVRRAVDAHHQLEESARRRATVEQEWSEFRR
                     RGYDNPSGSFGNEGVLGNVLGGILTGAISGAVLGEVLRGGFHQGPSPWDSDFGGGLPF
                     PQPGGSDDGGSIGGGGDFETGGSF"
BASE COUNT          482 a          806 c          761 g          465 t
ORIGIN      
        1 atcggatctg ctcgaagtgg tgccgaaggg cggacgcatc agccttttcg atctggtcca
       61 cctcgagctc gagctggttg ttcagccctt cgttgccatg tcgcgtgtag cgcaagtaaa
      121 tgcggttcac gaggtaaacc gggatgaata tggaagccgt cagactcgcg atgatccaat
      181 cataccaaaa caggatcgcg accgagccga cgattcccac gatcgaagtg acgagtaccg
      241 ggatgtcctt ctcgaagaag gtcacgaatt cccgtgacat cgcggaacgc gctgcgacac
      301 tggttgcttg aacgcctccc cggcgctgtc gcaagatcgt gtcttccacg acggcgttgt
      361 agatcgtcgt atagacgcgc gtgtcgtaca tctgccgcgc aagtccgatc gcagagcgca
      421 ggccccaggc cgctacaatg ggaatggcca tcgtccagtc gtgctcgatc agaccattga
      481 tcgcgacacc cgtggcccac gggtacgaca gctcaagaag gtcttctacg agcgtgagcg
      541 catacgtgag cgtaatgcgg gacctgaagc gcctgagcgt cgctagcgca gacccgcggc
      601 gagccccgtt aagcgcagtt gagaccggct ggtccgagac ttgtaccatc catcaaatac
      661 gtcctgccgc cagcagagtt cctgctggcc tcctggctta atacggtttc ccacacacgt
      721 cggggttcac gaaagcccgc ctcattcgct cgacagttcg cctggagtcc gggtcggcga
      781 atgtgaggta gggcgtcata tcgaggtcgc gcggaacttg cctgatgggc ttcgcatcca
      841 tggcatcggc cacgaccgac caataggcgt tgtagggcag ccagggcgcc ccgatcgcct
      901 cagcggcaag tttctcgacc cgaagagcga tctgatgcgc gtgggggtac gatgtgtcga
      961 actcgtccag gatggccttc tcgacgcgct cgtgcaggtt caacagcttg gcaactggta
     1021 ctcggatgcc cttgaacgat ttttctcgcg ggactgatcg gtcgatgtac acgacgcgag
     1081 catcagtgga gtagcctgca acgaatggga tgtcacacct gtcgttgata gacactttga
     1141 gagtctgtgc atccagcatc tcgcgaagca gaggatacaa agcgctgcga tggattgcga
     1201 cgcgcgggac gacctgattg tactgcgcgt agtcaacccc ggcggcggcg acgatctgca
     1261 tctcgaggtg atctgcaagc gcctgcgacg tgccttccgg catttcaagc cggacacgaa
     1321 agacccgttc cagcgcatcg cggaacgcag caatcatgcc ggcaggtagc ggctggccaa
     1381 agctgcttgg aatacgggcg ctctccggga cctcctgtgc gcggcgcacg attatcttca
     1441 acgcaccgac gagcaggcgg gggtctatct cgagctcatc cttagggacg ggataacgac
     1501 tctgcaggtg ctccaaatcc cgatcgaatc ggtgattgat cgggccgcgc tcctcgcgtg
     1561 ctgccacgtc ggcgaacgcc gattcatctc gcgccaacga cgaataagga aaagctgtcc
     1621 ctccagcgac aaccagggag aacgcaaggg caatggctgc cccagtcggt gttctggaac
     1681 ggcgtgggag catgcagctt acctgctgtc acgcgcgctc tcgcgctctg cctcgacagc
     1741 tgcggctcgc agagcttcgg caaactcctc gtcgccctcg cgttcagcgt cgtcggcgca
     1801 ctgcagcgca gccttcggct cgagcaactt gaacgggtcc tcgcgcttcc acctgacggc
     1861 aacgcgccat tctcctgcgc gatactcgaa cggctgtaca aatcttgcca tttgccgtca
     1921 cgtcagaccg gaggtgtgca acaacgcatc gcgtgtgctt ttggagccgg cgggtccggc
     1981 cctcaggcat caacgacgac gcaaagcaca cgttccctta aggctcgggc tcgcactggt
     2041 gccggcgcgc cagacgcgac cgtcaacaag acgtgccgct tcccgcagcg ctggaacgca
     2101 agcaccctca gcctgggagc cgcttcgttt ccgctagaag gatccgccgg tctcgaagtc
     2161 tccgccgccg ccgatcgatc caccgtcgtc ggagccgcct ggctgcggga acggcagccc
     2221 accgccgaag tcggaatccc agggactcgg tccctgatgg aacccgcccc ggagaacctc
     2281 gccgagcacg gcgccgctga tcgctcccgt caggatgccg ccgaggacat tgcccagcac
     2341 gccctcgttg ccgaagcttc cggacggatt gtcatagccg cggcgccgga actcgctcca
     2401 ctcctgctcg accgtcgcgc gacggcgggc gctctcctcc aactgatgat gcgcgtccac
     2461 ggcccggcgc acggcggcgg tgatcttcgt atcgatggtc tggagctgcc ggac
//
LOCUS       DASQWN010000211         3484 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_911832, whole genome shotgun sequence.
ACCESSION   DASQWN010000211 DASQWN010000000
VERSION     DASQWN010000211.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 3484)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3484)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3484
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_911832"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..328)
                     /locus_tag="VE686_03930"
     CDS             complement(<1..328)
                     /locus_tag="VE686_03930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009494598.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-binding domain-containing protein"
                     /protein_id="HYY83632.1"
                     /translation="MEPSSTPILRFVMPSHAQHLPSSLILVGAGKMGGSMLEGWLKVG
                     MNPAGVTVIDPRPSDEMARFCSDKGIALNPESPRAADVLVLAVKPQMLDEAAAPLNAL
                     IGPGTLV"
     gene            complement(362..865)
                     /locus_tag="VE686_03935"
     CDS             complement(362..865)
                     /locus_tag="VE686_03935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017484382.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbjN domain-containing protein"
                     /protein_id="HYY83633.1"
                     /translation="MPQLNNIEPDRSEHPLDVVERLAGLREWIFDRAETDEMSVSVNG
                     RWADYHIAFSWIEDVEAMHVACAFDLKVPERRRSEVLQLVSRINEQLWVGHFDLWSSE
                     NVVMFRNALLLAGGAEPTHGQCETMLRVAVEACERYFQAFQFVIWAGKSAREALDSVL
                     FETEGEA"
     gene            complement(1125..1415)
                     /locus_tag="VE686_03940"
     CDS             complement(1125..1415)
                     /locus_tag="VE686_03940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019400358.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="accessory factor UbiK family protein"
                     /protein_id="HYY83634.1"
                     /translation="MAQTSNRFLDDIARLVTDAAGAAQGVRREVETVVKTQFERMLRD
                     MDVATREEVEVLREMLASLRAENERLAARVQALETRRDVDDGVPPAAPGISV"
     gene            1549..2397
                     /gene="lgt"
                     /locus_tag="VE686_03945"
     CDS             1549..2397
                     /gene="lgt"
                     /locus_tag="VE686_03945"
                     /EC_number="2.5.1.145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017486144.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008961 -
                     phosphatidylglycerol-prolipoprotein diacylglyceryl
                     transferase activity [Evidence IEA];
                     GO_process: GO:0009249 - protein lipoylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="prolipoprotein diacylglyceryl transferase"
                     /protein_id="HYY83635.1"
                     /translation="MLLALPFPAIDPVAIAIGPLAIRWYALAYVVGLLGGWYYARRLA
                     GNASLWGDLRRPTLADIDDLIVWVALGVVLGGRIGYVLFYNFDVYLAQPSEMFAVWRG
                     GMSFHGGFLGSILAILLFARRRNLSGLAMLDLAAVVVPIGLFFGRIANFVNGELWGRP
                     APDFPYAFVFPNGGPVPRHPSQLYEAFGEGLVLFVLLALAVRRFGFRRPGLLGGMFVL
                     GYAVARIVCEFFREPDAQLGYLFGGVTMGMLLSLPMALVGAVAIVLAARGVTRPRAAA
                     LETRSA"
     gene            2394..3473
                     /locus_tag="VE686_03950"
     CDS             2394..3473
                     /locus_tag="VE686_03950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018409107.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HYY83636.1"
                     /translation="MSALRVEIERLIAVEGPMTVERYMALCLGHPVYGYYRTRDPLGP
                     RGDFTTAPEISQMFGELIGLWAAEVWRAMGDPSPVRLVELGPGRGTLMADALRAARVL
                     PAFRSATAVHLVETSPALRARQEAALAPAGAPVSWHGDLAEVPDGPAIVIANEFFDAL
                     PIRQFVGTERGWCERLVGLSEGGLAFGLAPEPARDVPLPVRPGATLEWPAAGVAVMGT
                     LAARLAAQGGAALVIDYGHARRAFGDTLQAVRDHAYADPLADPGEADLTAHVDFEMLA
                     DATRAGGANTWGPVTQGGFLTALGIRERAAMLRQRATPEQAADIDGAVQRLIGETEMG
                     TLFKVLALTGPGQDAPAGFEPPGQP"
BASE COUNT          484 a         1239 c         1192 g          569 t
ORIGIN      
        1 tgaccagggt tcccggaccg atcagcgcgt tcagcggcgc ggcggcctca tccagcatct
       61 gcggcttgac cgcgagcacg agcacgtccg ccgccctggg gctttccggg ttgagggcaa
      121 tgcccttgtc cgaacagaac cgcgccatct cgtccgatgg gcgcgggtcg atcaccgtga
      181 cgcctgccgg attcatgcca accttgagcc agccctccag catggagccg cccatcttgc
      241 ccgcgccgac gaggatgagg gaggagggca gatgctgagc atgggacggc atgacgaacc
      301 tgaggatagg ggtggaggac ggctccacta tccatactcc gcccggcctg tcgaggctgg
      361 atcaggcctc gccttcggtc tcgaacagga cgctgtcgag ggcctcgcgg gcggacttgc
      421 cggcccagat cacgaactgg aaggcctgga agtagcgctc gcaggcttcc accgcgaccc
      481 gcagcatggt ctcacactgg ccgtgggtgg gctcggcgcc gccggcgagc agcagggcgt
      541 tgcggaacat caccacgttc tccgagctcc acaagtcgaa atgcccgacc cagagctgct
      601 cgttgatgcg cgagacgagt tgcagaacct ccgaccgacg ccgctccggc accttgaggt
      661 cgaaggcgca ggcgacgtgc atcgcctcaa cgtcctcgat ccacgagaac gcgatatgat
      721 agtcggccca gcggccgttg accgacacgg acatctcatc ggtctcggcc cggtcgaaga
      781 tccactccct taatcccgcg agacgctcca ccacgtcgag ggggtgctcg gaacggtctg
      841 gttcgatgtt gttgagctgg ggcatgtcga tccgtggtgg ctcgccgaac gggagcaagg
      901 gccgaaggaa acgaacgcga acttggaagc gaccgcacca cgcccaggcg tagaagtgct
      961 gagcgtattc gcggcaagaa aaacgtagtt cttccggccg ccgaatcagt tctcgtttcg
     1021 actgtagccc cggcgactcc ggggcttcaa agccttttca aggtcgagga ttcgaggtct
     1081 gcggacaatc gcgcgctgcg gcctgtccac agcgctccgg tggctcagac ggagatgccc
     1141 ggcgcggccg ggggcacgcc gtcgtcgacg tcgcgccgcg tctcgagggc ctgcacccgc
     1201 gcggcaaggc gctcgttctc ggcgcgcagc gaggcgagca tctcgcgcag cacctcgacc
     1261 tcctcgcgcg tcgcgacgtc catgtcgcgc agcatgcgct cgaactgcgt cttgaccacc
     1321 gtctcgacct cgcggcgcac gccctgggcc gcgccggctg cgtcggtcac gagccgcgcg
     1381 atgtcgtcga gaaagcggtt cgaggtctgc gccatgggaa tgccacctgc cgggagccgc
     1441 aggccgcagg ccccttcgcg agaactgaca tggggcggaa gagcccggag tgcaacgggg
     1501 ttgacggccc gcgcctgccc ggtcctatag cccgaccccg gcgcccccat gctcctcgcc
     1561 ctgcccttcc ccgccatcga ccccgtggca atcgccatcg gccccctcgc gatccgctgg
     1621 tacgcgctcg cgtacgtggt cgggctcctg ggcggctggt actacgcccg ccggctcgcc
     1681 gggaacgcgt cactgtgggg agacctccgc cgcccaacgc tcgccgacat cgacgacctc
     1741 atcgtgtggg tcgccctcgg cgtcgttctc ggcggccgca tcggctacgt cctgttctac
     1801 aacttcgacg tctatctggc gcagccgtcc gagatgttcg ccgtttggcg cggaggcatg
     1861 tcgttccacg gcggcttcct cggctcgatc ctcgccatcc tcctgtttgc gcggcgccgg
     1921 aacttgagcg gactcgccat gctcgacctc gccgccgtcg tcgtgcccat cggcttgttc
     1981 ttcgggcgga tcgccaactt cgtgaacggc gagctgtggg gccggcccgc cccggacttc
     2041 ccctacgcct tcgtgtttcc gaacgggggg ccggtgccac ggcacccgag ccagctctac
     2101 gaggctttcg gggaagggct cgtcctgttc gtgctgctcg cgcttgcggt caggcgcttc
     2161 gggttccggc ggccgggcct gctcgggggc atgttcgtcc tcggctatgc ggtcgcgcgg
     2221 atcgtgtgcg agttcttccg cgagcccgac gcgcagctcg gctacctctt cggcggcgtc
     2281 acgatgggga tgcttctgtc gttgccgatg gccctcgtgg gcgcggtcgc gatcgtcctt
     2341 gccgcccggg gcgtcacgcg cccgcgcgcg gcggcgctcg agacgcgctc ggcttgagcg
     2401 cgcttcgcgt cgagatcgag cggctcatcg ccgtcgaggg ccccatgacg gtggagcgct
     2461 acatggcgct ctgcctcggg cacccggtct acggctacta ccgcacccgc gacccgttgg
     2521 gcccgcgggg agacttcacc accgcccccg agatcagcca gatgttcggg gagctgatcg
     2581 gcctgtgggc cgccgaggtc tggcgcgcca tgggcgatcc ctcccccgtg cgcctggtcg
     2641 agctcggtcc aggccgcggc accctcatgg ccgacgcgct ccgcgccgcg cgggtgctgc
     2701 ccgccttccg ctcggcgacc gcggtgcatc tggtcgagac cagtccggcg ctgcgcgcgc
     2761 gccaggaggc ggcgctggcg ccggcgggcg ctccggtgtc gtggcatggc gaccttgccg
     2821 aggtgcccga cgggccggca atcgtaatcg ccaacgagtt cttcgacgcc ttgccgatac
     2881 ggcagttcgt cggcaccgag cgcggctggt gcgagcgcct ggtcggcctg agcgagggag
     2941 gcttggcgtt cgggctcgcg cccgagccgg cgcgcgacgt gccgcttcct gtgcgtcccg
     3001 gggccacgct cgagtggccg gcggccggcg tcgccgtcat gggcacgctc gccgcgcggc
     3061 ttgccgccca gggcggggcg gcgctcgtca tcgactacgg ccacgcgaga cgcgccttcg
     3121 gcgacaccct gcaggccgtg cgcgaccacg cctacgcaga cccgctcgca gaccccggcg
     3181 aggcggatct gaccgcccat gtcgatttcg agatgctggc cgacgcgacg cgggccggcg
     3241 gcgccaacac ctggggtccc gtcacccaag gcggattcct gacggctctc ggcatccggg
     3301 agcgtgccgc gatgctgcgc cagcgggcga caccggagca ggcggccgat atcgacggcg
     3361 cggtgcaacg cttgattggc gaaacggaga tgggcacatt gttcaaggtg ctcgccctca
     3421 ccggtcccgg acaggatgcg ccagctggct ttgaacctcc aggccagccc tgaacgccca
     3481 gctt
//
LOCUS       DASQWN010000212         2766 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_216548, whole genome shotgun sequence.
ACCESSION   DASQWN010000212 DASQWN010000000
VERSION     DASQWN010000212.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2766)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2766)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2766
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_216548"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            172..423
                     /gene="rpsU"
                     /locus_tag="VE686_03955"
     CDS             172..423
                     /gene="rpsU"
                     /locus_tag="VE686_03955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018429411.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000314 - organellar small ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S21"
                     /protein_id="HYY83637.1"
                     /translation="MQVLVRDNNVDQALRALKKKLQREGVFREMKLRGHYEKPSEKKA
                     RERAEAVRRARKLIRKKMQREGLLPSKPKPEPRAAAPRR"
     gene            523..1356
                     /locus_tag="VE686_03960"
     CDS             523..1356
                     /locus_tag="VE686_03960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012453827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HYY83638.1"
                     /translation="MIGHAFGRAAPFALLLSATLLAGCQTASGPTARVAVVEEEDKTG
                     GTSANLGSLSEVIQRNPSDPSAYNTRGAAYARVGRYSEAVTDFTKAVQLDPSNAAAYT
                     NRGLAFRQTNRNDAALADFTKAIESDANYAPAYVARANLLRVTGSYDQALSDLAIAVR
                     LSPESAEGVHARGLVHQRMGRHREAVQDFDAAIDRNPFVAAPYQARGESLTALGQYDK
                     AIEDFNAALNVNNKNAGAWAMRGLAYEKAGKRAEARESYQRALSVDANSTAARDGLRR
                     V"
     gene            complement(1426..2241)
                     /locus_tag="VE686_03965"
     CDS             complement(1426..2241)
                     /locus_tag="VE686_03965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014492437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HYY83639.1"
                     /translation="MRTALTLVGFALAAYAAVVLLFYLKQGALLYPASTERTTATQAG
                     LSGFEDVVLRTPDGESIVGWYKAPQPGRAIILYFHGNGGSLLDRAGRAGVLTQDGRGL
                     LIVSYRGYSGSTGTPTETGLRTDAGTAYDWLAQRFPAERIVLYGESLGTGVAVGLATE
                     RRVAGVILDAPFTSAADVAGHHYRFLPVWLLRDQYRSLDRIQDIRAPLLVLHGDRDGV
                     VPFGLGERLYEHAAEPKRFVRIPGGDHASNLENGGLEPVRKLLTDVETKLPAL"
     gene            complement(2260..>2766)
                     /locus_tag="VE686_03970"
     CDS             complement(2260..>2766)
                     /locus_tag="VE686_03970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019403307.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)(+) transhydrogenase (Re/Si-specific)
                     subunit beta"
                     /protein_id="HYY83640.1"
                     /translation="AEDAAIQLGYASKVIVVPGYGMAVAQAQHALKEMGDKLKEEGVR
                     VKYAIHPVAGRMPGHMNVLLAEANVPYDEVFELEDINGQFPQADVAFVIGANDVTNPA
                     AKTDPQSPIYGMPILDVERAKTVLFIKRGMGSGYAGVENELFFRDNTMMLFGDAKKVV
                     DDILKAFD"
BASE COUNT          456 a          976 c          945 g          389 t
ORIGIN      
        1 ccgggccgca agatgggcca cgtgacgcgg gtgctcccgg agaagggttg accgtcccat
       61 tactggacag ttgcgcgcat tccgtggtaa cgggccggcg caatggctcg acaggcgcaa
      121 ggcgcccggc cgttgaggct attccacgat cagcgcatca cgagggaaac ggtgcaggtt
      181 ctcgtccggg acaacaacgt cgaccaggcg cttcgcgcac tcaagaagaa gctgcagcgc
      241 gagggcgtct tccgcgagat gaagctgcgc ggccactacg agaagccctc cgagaagaag
      301 gcccgcgagc gggcggaggc ggtgcgtcgg gcacgcaagc tgatccgcaa gaagatgcag
      361 cgcgagggcc tgctgccctc gaagccgaag cccgagccgc gcgccgcggc gccgcggcgt
      421 taatcgtccg gaaaccagaa ttccgctttg tggcgtaagc ggcgtcccgg ccgcgcgtcc
      481 tgggccagat gcggccgcgc gccgacgcca aggagacgag ccatgatcgg tcacgcattc
      541 ggccgcgctg cccccttcgc gcttctcctc agcgcgaccc tcctcgccgg gtgccagacg
      601 gcgtccggcc caacggcccg cgtcgcggtg gtcgaggagg aggacaagac ggggggcacc
      661 agcgccaacc tcggctcgct ctcggaagtc atccagcgca acccgagcga tccctccgcc
      721 tacaacacgc gcggcgccgc ctacgcccgg gtcgggcgct acagcgaagc cgtgacggac
      781 ttcaccaagg cggtgcaact cgacccctcg aacgctgccg cctacaccaa ccgcggcctc
      841 gccttccggc agacgaaccg caacgacgcg gcccttgccg acttcaccaa ggcaatcgag
      901 tccgacgcga actacgctcc ggcctacgtc gcgcgcgcca acctcctgcg cgtcactggc
      961 tcctacgacc aggcactcag cgaccttgcc attgcggtcc ggctcagccc agagtcggcg
     1021 gaaggggtgc acgcccgcgg cctcgtgcac cagcgcatgg gacgccatcg cgaagcggtc
     1081 caggacttcg acgccgccat cgaccgcaac ccgttcgtgg ccgcgcccta ccaggcccgg
     1141 ggcgagagcc tcacggcttt ggggcagtac gacaaggcga tcgaggactt caacgcggcg
     1201 ctcaacgtca acaacaagaa cgccggtgcg tgggcgatgc gcgggctcgc ctacgagaag
     1261 gcgggaaagc gcgccgaggc gcgcgagagc taccagcgcg cgctttcggt tgacgccaac
     1321 tccaccgccg ctcgagacgg cctccgccgg gtctaggcgc gacggcgtcg atgccgggcg
     1381 ggcctgccgc tctcacgatc gcgccaggag cccgttccag gccggctaca gggccggcag
     1441 cttcgtctcg acgtcggtga ggagctttcg gacgggctcg aggcccccgt tctcgaggtt
     1501 gctggcgtgg tccccgccgg ggattcgcac gaagcgcttg ggctcagcgg cgtgctcgta
     1561 gaggcgctca cccaaaccga aaggcaccac gccgtccctg tcgccgtgga gcaccaacaa
     1621 gggggcgcgg atgtcctgga tgcggtccag ggatcggtac tggtcacgca gcagccagac
     1681 cggcaggaaa cggtagtggt gcccggcgac gtccgccgcc gaggtgaagg gcgcgtcgag
     1741 gatgacgccg gcgacccggc gctcggtcgc gagcccgacg gcgacgcccg tcccgaggga
     1801 ctcgccgtag aggacgatgc gctccgccgg aaagcgctgc gcgagccagt cgtaggccgt
     1861 gcccgcgtcc gtgcgcaggc ccgtttccgt cggggtgccg gtggagccgg aatagccgcg
     1921 atagctcacg atcaggagac cgcgcccgtc ctgcgtcagg actccggcgc gtccggcgcg
     1981 gtcgaggagg ctgccgccgt tgccgtggaa atacaggatg atcgcgcgcc cgggctgcgg
     2041 agccttgtac cagccgacga tgctctcgcc gtcgggcgtg cgcaggacca cgtcctcgaa
     2101 gccggaaagg cccgcctgcg tggcggtcgt gcgctccgtc gacgccgggt aaagcagcgc
     2161 accctgcttc agatagaaca gcaggaccac ggccgcgtag gccgcgagcg cgaagccgac
     2221 gagcgtcagg gcggtccgca tgccgcccgc gtccggccct cagtcgaaag ccttgaggat
     2281 gtcgtcgacg accttcttgg cgtccccgaa cagcatcatg gtgttgtcgc ggaagaacag
     2341 ctcgttctcg acaccggcgt agcccgagcc catgccgcgc ttgatgaaca gcacggtctt
     2401 ggcccgctcc acgtccagga tcggcatgcc gtagataggc gactgcgggt cggtcttggc
     2461 ggcggggttc gtcacgtcgt tggcgccgat cacgaaggcg acgtccgctt gcgggaactg
     2521 gccgttgatg tcctcgagct cgaacacctc gtcgtagggc acgttggcct cggcgagcag
     2581 cacgttcatg tgccccggca tccgcccggc gaccggatgg atcgcgtact tcacccgcac
     2641 gccctcttcc ttcagcttgt cccccatctc cttgagcgcg tgctgcgcct gcgcgaccgc
     2701 catcccgtag ccggggacga cgatcacctt gctggcgtag ccgagctgga tggccgcgtc
     2761 ctccgc
//
LOCUS       DASQWN010000213         3719 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_415100, whole genome shotgun sequence.
ACCESSION   DASQWN010000213 DASQWN010000000
VERSION     DASQWN010000213.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 3719)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3719)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3719
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_415100"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(201..776)
                     /locus_tag="VE686_03975"
     CDS             complement(201..776)
                     /locus_tag="VE686_03975"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY83641.1"
                     /translation="MAKRVLRAPILVVAATIVLVDDAFRVLFVPAIRAVARLEPVRRV
                     EALVARLPPYATLALFLIPLAVIEPLKLYGLFLFGQGRWISGTVTFVVAKVVGLGLAE
                     RLFAISRDKLLSIRWFGWCYRKLVGLKDGIHAWLLATSFWPATVRLVRRVRDTLAAAK
                     RWLGSFGARARRGTLAARLAAARRLARRTGP"
     gene            complement(916..1185)
                     /locus_tag="VE686_03980"
     CDS             complement(916..1185)
                     /locus_tag="VE686_03980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012454495.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3072 domain-containing protein"
                     /protein_id="HYY83642.1"
                     /translation="MAKADPKQQSRARDDDRDVHNPKASPDPNSNQIKDPDDWVTGHE
                     PMTGAQASYLKTLSEQAHEPEAFDPNLEKAEASKRIDHLKEETGR"
     gene            1483..1692
                     /locus_tag="VE686_03985"
     CDS             1483..1692
                     /locus_tag="VE686_03985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012452746.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005829 - cytosol [Evidence IEA];
                     GO_function: GO:0001072 - transcription antitermination
                     factor activity, RNA binding [Evidence IEA];
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0003723 - RNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cold-shock protein"
                     /protein_id="HYY83643.1"
                     /translation="MNTGTVKWFNDQKGYGFIQPDNGGKDVFVHVTAVERSGLRGLAE
                     GQKISYELQTDQRSGKTSAVELKAV"
     gene            1920..2195
                     /gene="infA"
                     /locus_tag="VE686_03990"
     CDS             1920..2195
                     /gene="infA"
                     /locus_tag="VE686_03990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011474121.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003743 - translation initiation factor
                     activity [Evidence IEA];
                     GO_process: GO:0006413 - translational initiation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-1"
                     /protein_id="HYY83644.1"
                     /translation="MAKEELITFEGLVTEILPDARYRVQLENGHEVIAYTAGKMKKNR
                     IKTLAGDRVTVEMSPYDLEKGRLVYRHKDERAALGPRPPQRGQFRRR"
     gene            complement(2212..2751)
                     /locus_tag="VE686_03995"
     CDS             complement(2212..2751)
                     /locus_tag="VE686_03995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009494618.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HYY83645.1"
                     /translation="MSLDPALRTLLLGAVPSLRAFAISLSGNVDRADDLVQDTLMRAL
                     ANIHRFEPGTNLNAWLFTILRNLFHSEYRKRKREVEDADGSYAARLATAPEQNARLDF
                     DDLRLALAKLSPDQREAVLLIGAEGFSYEEAAQICGTAVGTIKSRVNRARRRLSELMS
                     LEMDEIGPDRLTRAALFAA"
     gene            complement(3141..>3719)
                     /locus_tag="VE686_04000"
     CDS             complement(3141..>3719)
                     /locus_tag="VE686_04000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012041961.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008483 - transaminase activity [Evidence
                     IEA];
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class III-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HYY83646.1"
                     /translation="LIFDEVITGFGRLGFAFAAERYGVIPDMITFAKGVNSGTVPMGG
                     VIVRKGIPDAFMKGPDHVIELFHGYTYSAHPLACAAALATQDIYREEKLFERARDLEE
                     TWADAMFSLKSLPNVVDIRTLGLVGAIDLASKPDAFGARAYEAMERGFHDIGIMMRVT
                     GDTIALSPPLVISQDEIGELVDKMTRVIKAVA"
BASE COUNT          614 a         1260 c         1277 g          568 t
ORIGIN      
        1 ggacgagccg ccgcccacgc gcgcgtcggc cacgccggcc gcggccagcg tcacggccgc
       61 cgcgagggcg agaacggcgc ggctgcgccc gttgaacaag gtcatcatga tggcctctga
      121 aaatccgaac ggagggacgg cgcccctccc cacgggaaat catatgggaa cataggcgca
      181 gaagcaaaag aggtcgcctc tcacgggccg gtccgtcgcg cgagccgtcg tgctgcggcg
      241 agccgcgctg ccagcgtgcc cctccgggcc cgcgcgccga agctcccaag ccagcgcttg
      301 gctgcagcca gggtatcccg cacgcgccgg acaagtcgga cggttgccgg ccagaagctt
      361 gtcgcgagca gccaggcatg aatcccgtcc ttcagcccta cgagcttgcg atagcaccag
      421 ccgaaccagc ggatcgacag gagcttgtcg cggctgatgg cgaaaagccg ctcggcgagg
      481 ccgaggccca ccaccttcgc gacgacaaag gtcaccgtgc cggaaatcca gcgcccctgg
      541 ccgaagagga acaggccata cagcttcaag ggctcgatga cggcgagcgg gatcaggaac
      601 agcgcgagcg tggcatacgg cggcagccgt gccacgagag cctcgacgcg ccggacgggc
      661 tcaagccttg cgaccgctcg gattgccggg acgaagagga cgcggaaggc atcgtcgacg
      721 aggacgatcg tcgccgcaac gacgaggatc ggcgcgcgca ggacacgctt ggccaaggtc
      781 gcgttgcggc gagacgcggg cgtgctcgga tccattccgc aaccctttga cccgcgcaaa
      841 cgtatcacgg ccgcgcgcga cgcggcagcg ccggcgagtt cgcaagtctc gccggacggg
      901 agcctcccgc cgcgcctagc gtccggtctc ttccttgagg tggtcgatgc gcttcgaggc
      961 ctcggccttt tcgaggttcg ggtcgaacgc ctcgggctcg tgcgcctgtt cggacagggt
     1021 cttgaggtac gaggcctgcg cgcccgtcat gggttcgtgt cccgtgaccc aatcgtcggg
     1081 atccttgatc tggttcgagt tcggatctgg ggaggccttg ggattgtgca cgtcgcggtc
     1141 gtcgtcacgg gcgcgggact gttgcttcgg atcggccttc gccatcaggc gctcctttat
     1201 cgttcatcta atgttctcct cgagaacgct gtcgggaggc ggccggttcc gcgccttcgt
     1261 accgccgtcg tacagcctcc ccatctcctg ccaggcttgc catccctggc ccccgcggct
     1321 atctttttgc cgatcgacat tggccggacg actgggccgc ttcgcctcgc gcaggtcgca
     1381 tgggcggcac gtttcagact accctcccca aagttcgacc aatcgggcgg gccgcaacgc
     1441 ggcgccgtcc ggcgcgccaa ccgtctacta agggaagagc ctatgaatac gggaacggtg
     1501 aagtggttca acgaccagaa gggctacggc ttcatccagc ccgataacgg cggcaaggac
     1561 gtcttcgtcc acgtcaccgc ggtcgaacgc tccggcctgc gcggtctcgc ggaaggccag
     1621 aagatctcct acgagctgca gaccgaccag cgttcgggca agacctcggc cgtcgagctc
     1681 aaggcagtct gacgaccgct cccgagagag cggggcgacc ccgctctctc gccgactgca
     1741 gccctggtcg cattcggtcg atgcggtccg cgcgcattcc tgccgcgccg gactgcggtc
     1801 gccaacgggc ccgccgctgc gggccgtttt cgtgaatcgt tgacccggcg acgcaaacga
     1861 ggcactgcgg cgtgcagcgg aagcggcgcg cgaggtgccc cgaccaggag agcgaatgca
     1921 tggctaagga agagctgatc accttcgagg gtctcgtcac cgagatcctg cccgacgcgc
     1981 gctatcgcgt gcagctggag aacgggcacg aggtcatcgc ctacacggcc ggcaagatga
     2041 agaagaaccg catcaagact ctcgcgggtg accgcgtcac cgtcgagatg tccccgtacg
     2101 atctcgagaa ggggcggctc gtctaccgcc acaaggatga gcgcgccgcg ctcggtcccc
     2161 gtccgccgca gcgcggccag ttccgccggc gctgagccgc cggaagccgc ctcaggcagc
     2221 gaacagcgcc gcccgcgtca ggcggtccgg cccgatctcg tccatctcga gcgacatcag
     2281 ctccgacagg cgccggcgcg cgcggttgac gcggctcttg atggtgccga cggcggtgcc
     2341 gcagatctgt gccgcttcct cgtacgagaa accttcggcg ccgatgagca gcacggcctc
     2401 gcgctgatcc ggcgacagct tcgcgagggc gaggcgcagg tcgtcgaagt caaggcgggc
     2461 attctgctcc ggcgccgtcg cgaggcgcgc cgcgtaggaa ccgtcggcgt cctcgacctc
     2521 gcgtttgcgc ttgcgatact cggagtggaa gaggttgcgc aggatggtga aaagccaggc
     2581 gttcagattg gtgcccggct cgaagcgatg aatgttcgcg agcgcgcgca tcagggtgtc
     2641 ctgcacgagg tcgtcggccc gatcgacgtt acccgacagg gagatcgcga aggcgcgcag
     2701 gctggggacg gccccgagca gcagtgtccg cagcgccgga tcgaggctca tcggccctcc
     2761 ctacgccggg gcgattcggc gcgccggtcg gcagcctcga gccgccgcac gagatcggaa
     2821 aggtgctccg gaaccggctc gctcactaga tcctcgtagg ccgcgcggag acgcatcccg
     2881 aggtgcttct gcgccaacgc atccacgcga gccggcccga gcgctcgccc gggcaccgtc
     2941 gctcgcggcc gggcgcgcag ccccggcgct gatttcgaca tactcaggac tcaggttccc
     3001 cgctaccgtt ttgagccggc cgggggcccc gggcgacatt cgcgaacaag actcaacgca
     3061 gctttggcgg cttggttccc gcgggcgcca gagcggcgtg ctcaggcgcc ccgtggcgaa
     3121 gtccctggtg ccgggcggcc ttacgcgacg gccttgatga cccgcgtcat cttgtcgacg
     3181 agctcgccga tctcatcctg cgagatcacg aggggcggcg agagcgcgat ggtgtcgccg
     3241 gtgacgcgca tcatgatgcc gatgtcatgg aagccgcgct ccatggcctc gtacgccctg
     3301 gccccgaagg cgtccggctt cgaggcgaga tcgatggcgc cgacgaggcc gagggtgcgg
     3361 atgtcgacga cgttcggcag gctcttcagc gagaacatcg cgtccgccca ggtctcctcg
     3421 aggtcgcgcg cgcgctcgaa cagcttctcc tcgcggtaga tgtcctgcgt cgcgagcgcc
     3481 gccgcgcagg cgagcgggtg cgccgagtag gtgtagccgt ggaagagctc gatcacgtgg
     3541 tcggggccct tcatgaaggc gtcggggatg cccttgcgca cgatgacgcc gcccatcggc
     3601 acggtgccgg agttcacgcc cttggcgaag gtgatcatgt ccgggatgac gccgtagcgc
     3661 tccgccgcga aggcgaagcc aagccgaccg aagccggtga tcacctcgtc gaagatgag
//
LOCUS       DASQWN010000214         2858 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1327878, whole genome shotgun sequence.
ACCESSION   DASQWN010000214 DASQWN010000000
VERSION     DASQWN010000214.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2858)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2858)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2858
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1327878"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            184..570
                     /locus_tag="VE686_04005"
     CDS             184..570
                     /locus_tag="VE686_04005"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY83647.1"
                     /translation="MSDPPRVCSRAAVVVWVGVSLAPIALLYALFGAGSRIGFVLFFP
                     TALGVLAGWAGRRKISVAFPVIVGSLGTGLLIVGIAQLGAGPNGDTTADEVIFLPLGL
                     LLILVASAAAAVTAGGSLRRLQREER"
     gene            907..1464
                     /locus_tag="VE686_04010"
     CDS             907..1464
                     /locus_tag="VE686_04010"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY83648.1"
                     /translation="MLRKSKLLAASVVATAAFAVSATPASAQNQEGLVNVAIEDVTVQ
                     VPVAIAANVCDLNVAVIADVVDDGGTCDATADSAATAGASPNGPPARQEGLVNVLVDD
                     VIVQVPVAVAANICDVNVAILAEVLDEGTACEAVADSDAQAGGGGGGAGANAAAFDPV
                     ELAPIIGLRLLDNDTTTDTGIPFVA"
     gene            complement(1537..2022)
                     /locus_tag="VE686_04015"
     CDS             complement(1537..2022)
                     /locus_tag="VE686_04015"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY83649.1"
                     /translation="MATTAALLMAPATALGAKGGQGKAKGKAKSCAKAKTAGYQLGGT
                     LVSMTADDPATPDSSEATVTLTVTSANKHARNAGAVRGETYTVPAGDAYVLKLGDDGA
                     LVPAAGDRVKVKGRVAVTKKRCAADGASTADRYATPDIVRVSVSRPETETEAEAEAPA
                     V"
     gene            complement(2134..2340)
                     /locus_tag="VE686_04020"
     CDS             complement(2134..2340)
                     /locus_tag="VE686_04020"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY83650.1"
                     /translation="MGRSDKDVRKRGALSGMRGVMLGAGLGALAATKGAPLAKKAMLK
                     YLTSYLTSQATDAAPQAAGGPPAQ"
     gene            2488..>2858
                     /locus_tag="VE686_04025"
     CDS             2488..>2858
                     /locus_tag="VE686_04025"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY83651.1"
                     /translation="MKQARTGLREMPSNAAWLVSRARDRRPKINAAAGHAASGSGDSV
                     DARVSQAQEAAERAREAEERALEAGRGAHESSEYAREVSDRGHARLAQLDRETRQRIK
                     QRVAEAQKSADEMVEHRLAEA"
BASE COUNT          386 a          995 c         1004 g          473 t
ORIGIN      
        1 cacgtggcgg ttcccgactg atgccgtacc gcaccattgg tcgccacgca gaggtcttgg
       61 accgcagccg ccgtttcgac cgccacaccc gcgaacgtcg ccagggtcac cagaaccacc
      121 aagcgcttcg gcattgcccc aattgtccgc ccgaccccgg agcgggtcaa ggggttcgcc
      181 ctcgtgtccg atcctccccg tgtgtgctcc cgcgccgctg tcgtcgtgtg ggttggcgtg
      241 tccctggcgc ccatcgcact cctgtacgcc ctgttcggtg ccggctcgcg gattggcttc
      301 gtcctgttct ttccgacggc cctcggcgtc ctcgccggct gggctgggag gcggaagatc
      361 tcggtggcgt tcccggtcat cgtgggttcc ctgggcaccg gcctgctcat tgtcggcatc
      421 gcgcagcttg gtgcaggtcc aaacggcgac acgacggccg acgaggtcat attcctcccc
      481 ctggggctgc tcctgattct ggtcgcctcg gccgcggcag ccgtgacggc cggcggcagc
      541 cttcggcgtc ttcagcgcga agagcgctag acggcgcgca agctagcgcc gtcgtgcggc
      601 ggcgacacgg cgccgcgcgg gctcgatgga cattccggcc cgaacccgcg ctggagaggg
      661 gtgctggccg ccgcccgtgc ggggtcggaa gggcggcgac cagcccgtgg gtctggtggt
      721 ccctcaggta gggcgagtct tcccgtctcg cgccgagagt cgcgcgacgt acgtgaacga
      781 cccccgtttg gggggacggg tggctacgtc gcgggagttc gggaacgact tgtgtagggc
      841 cggatgcccg gatgcgggcg cggcgcctag gtagggaaag gaagccccct agaaggagga
      901 cagaccatgc tcaggaagag caagctgctc gctgcgtccg tcgtagccac cgcagcattc
      961 gccgtctcgg caacgccggc gtcggcacag aatcaggaag gtcttgtaaa cgttgcgatc
     1021 gaggacgtca ccgtgcaggt gcccgtggcg atagccgcca acgtgtgcga cctgaacgtc
     1081 gccgtgattg ccgatgtcgt ggacgacggc ggcacgtgcg acgcgaccgc ggactcggct
     1141 gcgactgccg gcgcttcacc caacgggccg ccggcccggc aagagggcct cgtcaacgtg
     1201 ctcgtggacg acgtcatcgt tcaggtgccg gttgccgtgg cggcgaacat ctgcgatgtg
     1261 aacgtggcga tcctcgccga ggtgctcgat gaggggaccg cgtgcgaggc cgtcgcggat
     1321 tcggacgcac aagccggcgg aggcggtggc ggagccggcg ccaacgctgc cgcgttcgat
     1381 cccgtcgagc tcgcgcccat catcgggctg aggctgctcg acaacgacac gacgacggac
     1441 accggcatcc cgttcgtggc ctaaccgcga acgagatcgg atgttgtcga aacggggcgg
     1501 gcgagagccc gccccgtttg cgctcggtcg cgtccgctaa acggccggcg cctccgcctc
     1561 cgcctccgtc tccgtctcgg gacgggagac cgacacgcgg acgatgtccg gtgtcgcgta
     1621 gcggtcggcg gtgctcgcgc cgtcggcggc gcagcgcttc ttggtcacgg cgacccggcc
     1681 cttgaccttc acgcggtcgc ctgccgccgg cacgagcgcg ccgtcatcgc cgagcttcag
     1741 cacgtacgcg tcgcccgccg gaaccgtgta ggtctcaccg cggaccgcgc ccgcgttgcg
     1801 cgcgtgcttg ttggccgagg tgaccgtcag cgttacggtc gcctcgctgc tgtcgggcgt
     1861 cgccgggtcg tccgccgtca tgctgacgag cgtgccgccg agctggtagc ccgccgtctt
     1921 cgccttcgcg cagctcttcg ccttgccctt cgccttgccc tgcccgccct tggcgccgag
     1981 cgccgtcgcg ggcgccatga gcagcgccgc ggtggtcgcc aacgcagcaa tcttccttgc
     2041 cgtcttcaac cctgcctcct tgaacctagc tttcattggt tcatcggcat cggacggcgc
     2101 ctgcctgagc gccagatgta cccgcggacg cgcctactgc gcgggcgggc cccccgcggc
     2161 ttggggggcg gcgtcggtcg cttgagacgt cagatatgac gtcaggtact tcaacatggc
     2221 tttcttggcg agcggggcgc ccttcgtcgc ggcgagcgca ccgagccccg cgccgagcat
     2281 cacgccgcgc attcccgaca gcgctccccg cttgcggaca tccttgtcgc tcctacccac
     2341 cgttcctcct tgaccgtgcg aacctccatc gactacccgg gttgcccgat ccggaagcgg
     2401 ccggccgccg tttgcgcgtg acccgctcgg gtacctcgcc ggctagcact gctgttttgt
     2461 ctcggccgga ggtggaggat gtcgctcttg aagcaggcgc gcacggggct gcgagagatg
     2521 ccctctaacg ccgcgtggct ggtgtcgcgc gctcgcgacc gtcggccgaa gatcaacgcg
     2581 gcggcgggtc acgccgcctc cggctccggg gactcggtcg atgcgagggt gagccaggcc
     2641 caagaggccg cggagcgcgc ccgcgaggcc gaggaacgcg ccttggaggc cgggcgtggg
     2701 gcgcacgagt cctctgagta cgcccgagag gtcagcgatc gcggccatgc ccgtctcgcg
     2761 caactcgacc gcgagacgag acagcggatc aagcagcggg tcgccgaggc gcagaagtcg
     2821 gcggatgaaa tggtcgagca tcggctggcg gaggccga
//
LOCUS       DASQWN010000215         2814 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_415121, whole genome shotgun sequence.
ACCESSION   DASQWN010000215 DASQWN010000000
VERSION     DASQWN010000215.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2814)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2814)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2814
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_415121"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            213..551
                     /locus_tag="VE686_04030"
     CDS             213..551
                     /locus_tag="VE686_04030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006020897.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY83652.1"
                     /translation="MRIDLNISGIEIEDADLASFDLVDVDADEVARTMPADADGEALY
                     ELGMLYAAGRSRAADLVAAHKWLNVAVMRGYLPAAQRRAELAQEMTSEEISVAQRQAR
                     LWLAGTITRH"
     gene            691..1113
                     /gene="ndk"
                     /locus_tag="VE686_04035"
     CDS             691..1113
                     /gene="ndk"
                     /locus_tag="VE686_04035"
                     /EC_number="2.7.4.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011926284.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004550 - nucleoside diphosphate kinase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside-diphosphate kinase"
                     /protein_id="HYY83653.1"
                     /translation="MALERTFSILKPDATRRNLTGAVNAVIEKSGLRIVAQKRVRMTR
                     EHAETFYAVHKERPFFGELVEFMTSGPVVVQVLEGDNAIAKYREVMGATNPANAAEGT
                     IRKQFAESVGENTVHGSDSAENADIEIRQFFAGNEIVG"
     gene            1205..>2814
                     /locus_tag="VE686_04040"
     CDS             1205..>2814
                     /locus_tag="VE686_04040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018272770.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin-dependent oxidoreductase"
                     /protein_id="HYY83654.1"
                     /translation="MNQLPRIERRSSVCPHDCPSTCSLEVEVLDGRSIGRVYGSEANT
                     YTAGVICAKVARYSERIHHPDRLLYPMKRTGPKGSGQFARISWDEALDLTAQKFLEAE
                     RAHGPEAVWPYYYAGTMGLVMRDGIHRLRNVKRYSGQYSTICTTTAWAGYIAGTGKLA
                     GPDPREMGLSDCVVIWGTNPVHTQVNVMTHAMRARKERGAKIVAVDVYMNATMKQADM
                     ALLVKPGTDGALACAVMHVLFRDGYADRAYLAAYTDCPGELEEHLRTRDPAWAAAITG
                     LSVAEIEAFARLVGERKRTYFRLGYGFSRSRNGVVNMHAASCIAAVTGAWQHEGGGAF
                     HNNGAIYHWRKELIEGLDVRDPKVRMLDQIQIGRILTGDAEALRGGPPVAAMLIQNTN
                     PVSVAPEQELVKRGFAREDLFACVHEQFMTETALMADVVLPATMFLEHDDLYQGGGHQ
                     YVQLGDKLVDPPGECRSNHEVICGLATRVGAEHRGFAMTPREIVDWTLTTSGWPGIAE
                     VEAQGGLLDVQPPFREAHYLDGFAYPDK"
BASE COUNT          475 a          987 c          933 g          419 t
ORIGIN      
        1 tcccggcaaa tgcgccgaat gtgtgccgcg acggcacgaa accgccctcg gcgacccgat
       61 tcacgagccc gtgcaaggtt ctggcaagct tcattgccac gcgattcacg gtgcctttta
      121 agcgattttt ccgatcctgc cgccgatcat cgctgcatca ggttgcaagc cgaacggcgc
      181 gagcgaccag cgaaaaacac agggtgggtg tcatgcggat cgacctcaac atcagcggca
      241 tcgagatcga agacgccgat ctcgcctcct tcgacctcgt cgacgtcgat gcggacgagg
      301 tcgcgcgcac catgccggcc gacgcggacg gcgaggccct gtacgagctc ggcatgctct
      361 atgcggccgg gcgctcgcgg gccgcggatc tcgtcgccgc gcacaagtgg ctcaatgtgg
      421 ccgtgatgcg cggctacctg ccggccgcgc aacgccgggc cgagctcgcg caggagatga
      481 cgtccgaaga gatttcggtg gcgcaacgcc aggcgcgcct ttggctcgcc gggactatca
      541 cccgccactg agggcttttc gcgctcccgc ctacgcgagc gagagcgccg caggaccgag
      601 ggccgtcgtc cgcgcttgag gcggggaggg ggcgtcgcta taagcgcgcg acctcaacac
      661 acccccgcac gatcccgcga aggacgatcc atggccctcg agcgcacgtt ttccatcctc
      721 aagcccgacg cgacgcgacg caatctcacc ggcgcggtca acgcggtgat cgagaagtcg
      781 ggcctgcgca tcgtggcgca gaagcgcgtg cgcatgaccc gcgagcacgc cgagaccttc
      841 tacgccgtgc acaaggagcg cccgttcttc ggcgagctcg tcgagttcat gacctcgggc
      901 ccggtggtcg tgcaggtcct cgaaggcgac aacgccatcg ccaagtaccg cgaggtcatg
      961 ggcgccacga acccggcgaa tgccgccgag ggcaccatcc gcaagcagtt cgccgagtcc
     1021 gtcggcgaga acaccgtcca cggttccgac agcgccgaga acgccgacat cgagatccgc
     1081 cagttcttcg ccggcaacga gatcgtgggg tgattgcctc tcccgcaagc gggagagggg
     1141 agcttcccgg gccgcttgtg ttccgccatg atgcggccct gtcttcgcac tagggccgca
     1201 ccgcatgaac cagctgcccc gcatcgagcg ccgttcgtcg gtctgcccgc acgactgccc
     1261 gtcgacgtgc tcgctcgagg tcgaggtgct cgacgggcga tccatcgggc gggtctatgg
     1321 gtcggaggcc aacacctaca cggcgggcgt gatctgcgcc aaggtcgcgc gttattccga
     1381 gcgcattcac cacccggacc ggctgctcta tccgatgaag cgcaccgggc cgaagggctc
     1441 gggccagttc gcgcgcatct cgtgggacga ggccctcgac ctcacggcgc agaaattctt
     1501 ggaggccgag cgggcgcacg gcccagaggc cgtctggccc tactactacg ccggtaccat
     1561 gggcctcgtc atgcgcgacg gcatccatcg cctgcgcaac gtcaagcgct actccggcca
     1621 atactcgacc atctgcacca cgaccgcctg ggcgggctac atcgccggca cgggcaagct
     1681 cgccgggccg gatccgcgcg agatgggcct ctccgactgc gtcgtgatct ggggcacgaa
     1741 cccggtgcac acgcaggtga acgtgatgac gcacgccatg cgggcccgga aggagcgcgg
     1801 ggcaaagatc gtcgccgtcg acgtctacat gaacgccacc atgaagcagg ccgacatggc
     1861 gcttctggta aagcccggca ccgatggcgc gctcgcctgc gcggtgatgc acgtgctgtt
     1921 ccgggacggc tacgcggatc gcgcgtacct cgcggcgtac acggattgcc cgggcgagct
     1981 cgaggagcac ctgcggaccc gcgatcctgc gtgggcggcc gccatcacgg gcctttccgt
     2041 ggccgagatc gaggcctttg cgcggctcgt cggggagcgc aagcgcacgt acttccgtct
     2101 cggctacggc ttctcccgca gccgcaacgg cgtcgtgaac atgcatgccg cgtcctgcat
     2161 cgcggccgtg acgggcgcgt ggcagcacga gggcggcggc gccttccaca acaacggcgc
     2221 catctatcac tggcgcaagg agctgatcga aggcctcgac gtgcgcgacc cgaaggtgcg
     2281 catgctcgac cagatccaga tcggccgcat cctgaccggt gacgccgagg cgctgcgcgg
     2341 cggcccgccc gtcgccgcca tgctgatcca gaacaccaat cccgtgtcgg tcgcccccga
     2401 gcaggagctg gtgaagcggg gtttcgcgcg cgaggacctg ttcgcctgcg tccacgagca
     2461 gttcatgacc gagacggcgc tcatggccga cgtggtcctg ccggcgacca tgttcctcga
     2521 gcacgacgac ctgtaccagg ggggagggca ccagtacgtc caactcggcg acaagctcgt
     2581 cgacccgccc ggcgagtgcc gctcgaacca cgaggtgatc tgcggcctcg cgacgcgcgt
     2641 cggcgccgag caccgcggct tcgccatgac gccgcgcgag atcgtcgact ggacgctcac
     2701 cacgtcgggc tggccgggca tcgccgaggt cgaggcgcaa ggcgggctcc tcgacgtgca
     2761 gccgcccttc cgcgaggcgc actatctcga cggcttcgcc tatccggaca agaa
//
LOCUS       DASQWN010000216         2128 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1029668, whole genome shotgun sequence.
ACCESSION   DASQWN010000216 DASQWN010000000
VERSION     DASQWN010000216.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2128)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2128)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2128
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1029668"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(209..721)
                     /locus_tag="VE686_04045"
     CDS             complement(209..721)
                     /locus_tag="VE686_04045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018859145.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY83655.1"
                     /translation="MATKADFTVEEWGRILASPMVAGMAITAADPSGVWGLLKEGMAG
                     GWALLEARQNAQANSLVRAVAEDFATGDGRTAARVALQARFTGAKVGGLKEACIAELR
                     AVAGILDVKADEDAGPFKAWLRDVAQKAAEAGTEGGFLGFGGVAVSEAEKATLQEISN
                     ALGHGGPAAP"
     gene            complement(1148..1303)
                     /locus_tag="VE686_04050"
     CDS             complement(1148..1303)
                     /locus_tag="VE686_04050"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY83656.1"
                     /translation="MGQIIPALLTRVARRCDAALGIDAEWVQPIVMTACCSGMLVAAL
                     ALLIVGV"
     gene            complement(1315..1812)
                     /locus_tag="VE686_04055"
     CDS             complement(1315..1812)
                     /locus_tag="VE686_04055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012252477.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY83657.1"
                     /translation="MGDFDHILNWKLQQGSHTFPGPDGGTCINEAALVAAGYAYRPIR
                     HVQEMPLCFSRPICGLALTLNDQAGDSERQRLLPFVTRLACADTPQVERLRADYIKAQ
                     SGVFGDNFERGLAILEGALAIGRQADPVSGEDVASRLEAVRPKPSTRKPLRSKLKALF
                     ELAGA"
BASE COUNT          350 a          748 c          682 g          348 t
ORIGIN      
        1 taagctgatg ccgtcccacg agacagctcg gccggagctg acctcgaaga ccgtccaacc
       61 tctccggtca ggccgcgcgt cgtaaagcat gtcaccaaag gcacggtgac cttggcgcaa
      121 gctaggcagc cttgtggccg ctgttgccac tcacgttaac tcggccgcgg gcggcaccgc
      181 gggccgggca acgacatcgc cggcgcagtc agggcgctgc aggtcccccg tggccgaggg
      241 cgttcgaaat ctcctgcagt gtcgccttct cggcctcgct cactgcgacc ccgccgaagc
      301 ccaagaagcc gccctccgtt ccggcttccg cagccttttg cgcgacgtcg cgcagccacg
      361 ccttgaaggg gccggcgtcc tcgtcagcct tgacatcgag gatacccgcc accgctcgca
      421 gctcagcgat gcacgcctcc ttgagcccgc cgaccttcgc gcccgtgaac ctcgcctgca
      481 gtgccacgcg tgcggcggtc cgtccgtccc cggtcgcgaa atcctccgcg acagcgcgca
      541 cgagcgagtt cgcttgagcg ttctgccgtg cttcgagcaa tgcccacccg ccagccatgc
      601 cctccttcag aaggccccag acgccgctcg ggtcggcggc cgtgatcgcc atgccggcga
      661 ccatcgggct cgccaggatg cggccccatt cctcgacagt gaagtccgcc tttgtcgcca
      721 tggaacacct ccacctatcg aacgcggggg gcgacacgcg gttcagcgtg ggcggtcggt
      781 aacccgccgg ggcgcagcca gccgctcagg gacgccgagc gaagacggtc tgccatggcc
      841 aagcgccgct ttgccttgga gcgagcaccg ctctcccaca agctgccata cctcctttcg
      901 gggatgcggc gtactgctgg ggggtgatcg acaggaccga ccgccctggc tgagcataag
      961 tctgcgcgct ccctcccgga ccccacgcca cggcgcgcag acccaacttg gcccgccggc
     1021 tcaccccggc gggtttttcg cgggattcca ccggctcatt cgcggcatcc gtatggggga
     1081 tcgggacgag gctcgatcgc tcgcgaccac ccatgcgcaa gcagccccgg cgtgcccctt
     1141 gtcggatcta gacgccgacg atcaggagcg ccaacgcggc gacaagcatt ccggagcagc
     1201 aagccgtcat gacgatcggc tgaacccact cggcgtcgat gccaagcgct gcgtcgcacc
     1261 gtcgtgcgac gcgcgtgagc agtgcgggga tgatctgacc cacgcccagg acacctacgc
     1321 tccggcgagc tcgaacaatg ccttgagctt ggagcgcagg ggcttcctgg tcgacggttt
     1381 cggtcgcacc gcttccaatc tggacgctac gtcctcaccg gaaacaggat cggcctgccg
     1441 cccgatcgca agtgcgcctt cgagtatcgc gagcccccgt tcgaagttgt cgccgaacac
     1501 ccccgattgg gccttgatgt agtcggcgcg caggcgctcg acttgtgggg tgtcggcgca
     1561 agcgaggcgc gtgacgaacg gcaagagcct ctgccgctcc gaatcgcccg cttgatcgtt
     1621 gagcgttaac gcaaggccgc aaatcggcct cgagaagcac agcggcatct cttgtacgtg
     1681 acggatgggc cggtatgcat agccggcggc gacgagggcc gcttcgttga tacaggttcc
     1741 gccgtcagga ccagggaagg tgtgcgaccc ctgctggagc ttccaattga ggatgtggtc
     1801 gaagtcgccc atggcggctc tccttcgagg tgccccccat cgaacaggct cctcctgccc
     1861 tgacaccctg tcaaaggaaa aagcacgcgc ctcttggtcg cgcgttcgcc ggaagggcct
     1921 gcggctgccg aaccggcgat ggacgcggta aggtcgtctc gagactcggg gacggcagta
     1981 gtgaaccctc agcaggtcga gttgcacgtc caggagggca tgtccgtgtc gggcctcctc
     2041 gtgcggccga gcgatgcccg gatctgctac gtgatggcgc atggtgccgg cgcgggaatg
     2101 caccaccggt ccatggccac gatggcgg
//
LOCUS       DASQWN010000217         2696 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1328011, whole genome shotgun sequence.
ACCESSION   DASQWN010000217 DASQWN010000000
VERSION     DASQWN010000217.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2696)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2696)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2696
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1328011"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..501)
                     /locus_tag="VE686_04060"
     CDS             complement(<1..501)
                     /locus_tag="VE686_04060"
                     /inference="COORDINATES: protein motif:HMM:NF013584.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidase family protein"
                     /protein_id="HYY83658.1"
                     /translation="MDDSLAFAPAVELARLVRERKVGALELLEAHLARVERLNPRINA
                     VVVQRAEEARRIARERDAQTMKGGDLGPLHGVPMTVKESFDIPGLPTTWGHPEHRNNV
                     AERPALAVERLERAGAVIFGKTNVPVALADWQSFNPVYGTTNNPWDVERGPGGSSGGS
                     AAALAAG"
     gene            complement(516..1319)
                     /locus_tag="VE686_04065"
     CDS             complement(516..1319)
                     /locus_tag="VE686_04065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010684178.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-CoA hydratase"
                     /protein_id="HYY83659.1"
                     /translation="MDDLGLGTQRMMARKEGSTGWMLFNNPARHNAVSLEMWEAMPRI
                     LADFEADDAIRCIILGGAGGKAFVSGADISEFAEKRSSRETIANYNAVAERASNALAA
                     CKKPTIAMIQGWCIGGGVGIALCCDMRIASEDSRFGVPAARLGIGYAYGGVARLADLV
                     GPSFAKEIFFTARQFDAAEAYQMGLINRVRPAAELESYVRGYAETIGNNAPLTIAAVK
                     LCVDEHFKDPGERDLAACKRAVDACAASADYTEGRTAFMEKRRPVFRGA"
     gene            complement(1501..2685)
                     /locus_tag="VE686_04070"
     CDS             complement(1501..2685)
                     /locus_tag="VE686_04070"
                     /EC_number="2.8.3.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015684781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CoA transferase"
                     /protein_id="HYY83660.1"
                     /translation="MPHLPASSALSRFKVLDLTRVRAGPTCARQLADWGADVIKIEMP
                     QDDGGMGGPRHGPDFQNLHRNKRAMTLDLKHPEGLKVFFQMVEQADVVIENYRPDVKF
                     RLGIDYDSLKKANPRIILGSISGFGQEGPYRDRPGFDQVAQGMGGLMSITGLPGQGPV
                     RVGIPVADLGGGIFCAMGILVALLEREVSGEGQWVRSSLLQAQISLLDFQAARWLMAK
                     EVPGQAGNDHPTSIPTGVFPTSDGHINIAAAGSHMYKRCCEALGAPHLATNPDYATDK
                     LRSQNRAALNAEIAEITRTRTSRAWVDLFNEIGVPAGPIYKMDEVFADPQVQHLRMAA
                     PVHSDKLGDIEVVNQPVELSRTPSSMVRATPEKGEHTDEVLAEFGFSADAIARLRREM
                     VV"
BASE COUNT          375 a          929 c          969 g          423 t
ORIGIN      
        1 cccggcggcg agggccgcgg cgctcccgcc cgacgagccg ccgggtccgc gctcgacgtc
       61 ccacgggtta ttggtcgtgc cgtagaccgg gttgaagctc tgccagtcgg cgagcgcgac
      121 gggcacgttg gtcttgccga agattaccgc gccggcgcgc tccaggcgtt cgacggcgag
      181 ggcagggcgc tcggcgacat tgttccggtg ctccgggtgg ccccaggtgg tcggcagacc
      241 ggggatgtcg aaggactcct tcacggtcat cggcaccccg tgcagaggcc cgagatcgcc
      301 gcccttcatc gtctgcgcgt cgcgctcgcg cgcgatccgc cgcgcctcct cggcgcgctg
      361 cacgacgacg gcgttgatgc gggggttcag gcgctcgacg cgggccagat gcgcctcgag
      421 cagctcgagg gcgccgacct tgcgctcgcg cacgaggcgc gcgagctcga ccgcgggggc
      481 gaaggcgagg ctgtcgtcca tgatgatcgt tccgctcagg cgccgcggaa cacgggccgg
      541 cgcttctcca tgaaggccgt gcgcccttcg gtgtagtcgg ccgaggccgc gcaggcgtcg
      601 acggcgcgct tgcacgccgc gaggtcccgc tcgccggggt ccttgaaatg ctcgtccacg
      661 cagagcttca cggccgcgat ggtcaggggc gcgttgttgc cgatggtttc ggcgtagccg
      721 cgcacgtacg actcgagctc ggccgcgggg cgcacccggt tgatgaggcc catctggtag
      781 gcctcggcgg cgtcgaactg gcgagccgtg aagaagatct ccttggcgaa ggaaggcccg
      841 acgaggtccg cgaggcgggc gaccccccca taagcgtagc cgatgccgag ccgcgccgcc
      901 ggcacgccga agcgcgagtc ctcagaggcg atgcgcatgt cgcagcacag cgcgatgccg
      961 acgccgccgc cgatgcacca gccctggatc atggcgatgg tcggcttctt gcacgccgcg
     1021 agcgcgttgc tcgcgcgctc cgccacggcg ttgtagttcg cgatggtctc gcgcgacgag
     1081 cgcttctcgg cgaattccga gatgtcggcg cccgacacga aggccttgcc gcccgcgccc
     1141 ccgaggatga tgcagcggat cgcgtcgtcg gcctcgaagt cggcgaggat gcgcggcatc
     1201 gcctcccaca tctcgagcga gacggcattg tggcgcgctg gattgttgaa cagcatccag
     1261 ccggtcgagc cctccttgcg ggccatcatc cgctgcgtgc cgaggccgag gtcatccatc
     1321 cgctaatcct ccaccgccac atccctcccc gtgaggggag ggcgactcgc gcctacaggc
     1381 gcgagcgggg tggggcggaa gctcgggtgc agacgattgg caccgtagtt ccaccccacc
     1441 cgggcgggcg ctgacgcgcc cgtctccgcc ctcccctcgc ggggagggat gacgcaactc
     1501 ctacaccacc atctctcgcc gcagcctcgc gatggcgtcg gcgctgaagc cgaactcggc
     1561 cagcacctcg tcggtgtgct cgcccttctc gggcgtggcg cgcaccatcg agctcggggt
     1621 gcgcgacagc tcgaccggct ggttcaccac ctcgatgtcg ccgagcttgt cgctgtgcac
     1681 cggggctgcc atgcgcagat gctgcacctg cggatcggcg aagacctcgt ccatcttgta
     1741 gatcgggcca gccggcacgc cgatctcgtt gaacagatcg acccacgcgc ggctcgtcct
     1801 ggtgcgcgtg atctcggcga tctcggcgtt gagagccgcg cggttctgcg agcgcaactt
     1861 gtccgtcgca tagtccggat tggtggcgag gtgcggggcg ccgagcgcct cgcagcagcg
     1921 cttgtacatg tgcgagccgg cggcggcgat gttgatgtgg ccgtcgctcg tcgggaacac
     1981 gcccgtcggg atcgaggtcg ggtggtcgtt gccggcctgg cccggcacct ccttggccat
     2041 gagccagcgc gcggcctgga agtcgaggag cgagatctgc gcctgcaaca gcgacgagcg
     2101 cacccactgg ccctcgcccg acacctcgcg ctcgagcagc gcgacgagga tgcccatggc
     2161 gcagaagatg ccgccgccga ggtcggccac cgggatgccg acgcgcacgg gcccctgtcc
     2221 gggcaggccc gtgatcgaca tgaggccgcc catgccctgc gccacctggt cgaagcccgg
     2281 gcggtcgcgg taggggccct cctggccgaa gcccgagatc gagccgagga tgatgcgcgg
     2341 gttcgccttc ttgaggctgt cgtagtcgat gccgagcctg aacttcacgt ccgggcggta
     2401 gttctcgatc accacgtcgg cctgctcgac catctggaag aagaccttca gcccttccgg
     2461 atgcttcagg tcgagcgtca tggcgcgctt gttgcggtga aggttctgga agtccgggcc
     2521 gtggcgcggc ccgcccatgc cgccgtcgtc ctgcggcatc tcgatcttga tgacgtcggc
     2581 gccccagtcg gcgagctggc gcgcgcaggt cgggccggcg cgcacgcgcg tgaggtcgag
     2641 gaccttgaag cgggagaggg cagacgaggc ggggagatgc ggcatggagc tctcgg
//
LOCUS       DASQWN010000218         3575 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_316490, whole genome shotgun sequence.
ACCESSION   DASQWN010000218 DASQWN010000000
VERSION     DASQWN010000218.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 3575)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3575)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3575
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_316490"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(561..992)
                     /locus_tag="VE686_04075"
     CDS             complement(561..992)
                     /locus_tag="VE686_04075"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY83661.1"
                     /translation="MQARPRIETVRPGADRDWAAEIERTIRSSAGPRAQPSSLQTAAG
                     PADEWSDTLDLVVQATTAINAAHERIAELDARNRDLEVSFAEELRALAARVTAAQEDL
                     ARVEARRLAAEQRAERAERRADAAAGWLKRIHDHAGKHVRP"
     gene            complement(1188..1592)
                     /locus_tag="VE686_04080"
     CDS             complement(1188..1592)
                     /locus_tag="VE686_04080"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY83662.1"
                     /translation="MSAAIGRPRIGGPGEQGFARGPGSARVVELDPASRNEVAVERAG
                     PQDLAADQDWGETLHMVHRASELLRAAEERVRELEDSNRELAERAAMQAEVLQGRVLQ
                     AQVRAEEAEQRRREAEEWLRRIHTAIAENLSP"
     gene            1886..2299
                     /gene="minC"
                     /locus_tag="VE686_04085"
     CDS             1886..2299
                     /gene="minC"
                     /locus_tag="VE686_04085"
                     /inference="COORDINATES: protein motif:HMM:TIGR01222.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004857 - enzyme inhibitor activity
                     [Evidence IEA];
                     GO_process: GO:0000918 - division septum site selection
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="septum site-determining protein MinC"
                     /protein_id="HYY83663.1"
                     /translation="MKRLDLARQSATAAPVEPTVARAPEAPRPVSLVISESVRSGQSI
                     VFREGDVTVIGSVSSGAEIIAGGSIHIYGTLRGRAFAGASGDPGARIFCRSLEAELLA
                     INGLYRVADRLEQGLRGRPVQAWLEGKAIAMAPLE"
     gene            2325..3140
                     /gene="minD"
                     /locus_tag="VE686_04090"
     CDS             2325..3140
                     /gene="minD"
                     /locus_tag="VE686_04090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006073438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0000918 - division septum site selection
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="septum site-determining protein MinD"
                     /protein_id="HYY83664.1"
                     /translation="MGKVLVVTSGKGGVGKTTSTAALGAALAHSGKSVVLVDFDVGLR
                     NLDLIMGAERRVVFDLVNVIQGHAKLAQALIRDKRLENLSLLPASQTRDKDALTEEGV
                     ALVIAELKEKFDWVICDSPAGIERGATMAMRHADVAVVVTNPEVSSVRDSDRIIGLLD
                     SKTERAEKGERVEKHLLLTRYDQARAERGEMLKTEDVLEILSIPLLGIIPESREVLRA
                     SNVGAPVTLSNPQSAPARAYADAARRLAGDTIAMSIPTDRRGLFDKFFGRRAA"
     gene            3137..3412
                     /gene="minE"
                     /locus_tag="VE686_04095"
     CDS             3137..3412
                     /gene="minE"
                     /locus_tag="VE686_04095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015929509.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0032955 - regulation of division septum
                     assembly [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cell division topological specificity factor
                     MinE"
                     /protein_id="HYY83665.1"
                     /translation="MNLLSFLRRRSSAPIARERLQILLAHERATVGGQPDLVAVLREE
                     ILAVIRKHVSVDGEKVQVKMERGGSVSTLEVDIEIPSLTPAAEAVAA"
BASE COUNT          542 a         1288 c         1216 g          529 t
ORIGIN      
        1 ccgaccgtgc ctgaaacgcc gcagagtgcg cctgcgccgg gcccgcccgc gcagcggccg
       61 gcctctgaac cgacgcgcgc gccggagccg cccctgccgc cccctcgcct ccggacagaa
      121 gcttctccag aggagcgacc cgccggtggg agcgacctcg acgtcgctcc gcgaccgcag
      181 gcgcccgcgg caggacgcga gcgcggtgca gcccgccccc ggtctgaacc gaaggacgcg
      241 aaagtccgcc cgcccacccc cgcagcgccg aaatctgcag cgtcgccgcg cacgtccggt
      301 cccgtccgcg tcaagccggg cgcatccgaa gctaagcccg cacggccgaa cgcctccgct
      361 gcagcgcgtc tcaagccccg gtcggctcca gcgcgggctg ggcgcgccat cccatgctgt
      421 gcggtcgagg aggtggttgt tctgctgccg cctccaccgc ccccgccgtg catggcgccc
      481 aggcgatcat ggaacgcagc cagctggcgc tggcgtctgc cgggtctgaa ccgcgacgat
      541 cgcgcgactt gccggcgacc ctagggtcgg acgtgctttc cagcgtggtc gtggatgcgc
      601 ttgagccatc cggcggccgc atcggcgcgc cgctcggctc gttccgcgcg ctgctcggcc
      661 gcgagacgcc gggcctcgac gcgcgcaaga tcctcctgcg ccgccgtgac ccgcgcagcg
      721 agcgcgcgca actcctcggc gaagctcacc tcgaggtcgc gattacgggc gtcgagttcg
      781 gcgatgcgct cgtgggccgc gttgatggcg gtcgtcgcct ggacgacgag atcgagggtg
      841 tcggaccatt cgtcggcggg tccggcggcc gtctgaagcg aggagggctg cgcccgcgga
      901 ccggccgaag agcggatagt acgctcgatc tccgcagccc aatcacgatc cgcgccggga
      961 cgaaccgtct cgatcctggg gcgcgcttgc atgggcagct cttcaaacgt gcgttgcggc
     1021 taagacgacg atcaagagat tcgcgattcg ggtcaatgtc gatcccgagg agaccgacag
     1081 aatacttcgg gcttcgtctg tgacttacgc ttgcgcccgg caggcgcgcc cgctcagacc
     1141 cgagcgttgc ttcccgtcct tacgtcgtcg aagggggctc gcccctctta tggggagagg
     1201 ttctcggcaa tcgcggtgtg gatgcggcgc agccactcct cggcttccct gcggcgctgc
     1261 tcggcctctt cggcgcgaac ctgcgcctgg agcacgcggc cttgcagaac ctcggcctgc
     1321 atcgcggcac gctccgcgag ttcgcgattg ctgtcctcga gctcacgcac gcgctcctcg
     1381 gctgccctga ggagctccga ggcgcgatgg accatgtgga gcgtctcgcc ccagtcctgg
     1441 tctgccgcga ggtcctgcgg ccctgcgcgc tcgaccgcga cctcgttccg gctcgcggga
     1501 tcgagctcga caacgcgggc gctgccgggg ccgcgggcga agccctgctc gcctggcccg
     1561 ccgatccggg gtcggccgat cgccgcgctc atgatgaatc tccccaaagc tcgatcgttt
     1621 gagtggcgtt gattcgtccc cgcaagtcaa acgcccgcgc ggcgcaggcg atctctgcgc
     1681 acgcgtcacc gcagaccgcg gcacgtcgtt aacccgacct taaccatgcg gtcggaattt
     1741 gaggtcaggc ccggcggtac gaagaaccat gaaacgaatc ggtggagcga agcggcgacg
     1801 tcaaaccggt cctgcccggc gccgcacgaa cgacttcaac ggaccgagca agacgggcat
     1861 cgcgctgccg aagcgccggg tcgccatgaa gcggctggac cttgcgcgac agagcgcgac
     1921 ggccgctccc gtcgagccga cggtggccag ggcgcccgag gcgccgcgcc ccgtgtcgct
     1981 cgtgatcagc gagtcggtgc gctccggcca gagcatcgtg ttccgcgaag gcgacgtcac
     2041 ggtcattgga tcggtcagtt ccggcgccga gatcatcgcg ggcggctcga tccacatcta
     2101 cggtactctg agagggcgcg ccttcgcggg cgcatccggc gatcccgggg cgcgcatctt
     2161 ctgccgcagc ctcgaggccg agctcctcgc catcaacggg ctgtatcgcg ttgccgatcg
     2221 cctcgagcag ggccttcgcg gccggcctgt ccaggcctgg ctcgagggca aggcgatcgc
     2281 catggcgccc ctcgagtaag cacaagaatc cacggagatc tgagatgggc aaggtactgg
     2341 tcgttacatc cggaaagggg ggcgtcggca agacgacctc gacggcggcc ctgggcgccg
     2401 cactcgccca cagtggcaag tccgtggtcc tcgtcgactt cgacgtcgga ttgcgcaacc
     2461 tcgacctgat catgggggcg gagcgccggg tcgtgttcga cctcgtcaac gtcatccagg
     2521 ggcacgccaa gctcgcgcag gcgctgatcc gggacaagcg gctcgagaat ctctcgctgc
     2581 tgccggcgtc gcagacccgc gacaaggacg cgctgaccga ggagggcgtc gccctcgtca
     2641 tcgccgagct caaggaaaaa ttcgactggg tcatctgcga cagcccggcc ggcatcgagc
     2701 gcggggccac catggccatg cggcacgccg atgtcgcggt cgtggtcacc aacccggaag
     2761 tctcctcggt ccgcgactcc gaccgcatca tcggcctcct cgactcgaag acggagcggg
     2821 ccgagaaggg cgagcgcgtc gagaagcacc tgctcctgac ccgctacgac caggcccggg
     2881 ccgagcgcgg cgagatgctc aagaccgagg acgtgctcga gatcctctcc atcccgctgc
     2941 tcggcatcat ccccgaaagc cgcgaggtcc tgcgcgcctc gaatgtcggc gcgccggtga
     3001 ccctctccaa cccgcagagc gctcccgcac gggcctatgc ggacgcggca cggcggcttg
     3061 cgggcgacac catcgcgatg tcgatcccga ccgaccgccg cggcctgttc gacaagttct
     3121 tcggacggag ggcagcatga acctgctcag cttcctcagg cggcgctcgt cggctccgat
     3181 cgcccgcgaa cgcctgcaga tcctgctcgc ccacgagcgc gccacggtcg gcgggcagcc
     3241 ggacctcgtt gccgtcctgc gcgaggagat cctggcggtc atccgcaagc acgtgagcgt
     3301 cgacggcgaa aaggtgcagg tcaagatgga gcggggcggc tcggtctcga ccctcgaggt
     3361 cgacatcgag atcccgagcc tcacgcccgc ggccgaggcc gtggcggcct gagccacccc
     3421 tgcaacggaa aagcccggcc ttgcgccggg ctttttcacg tctattgcgc cgcgaaatca
     3481 gcgcgccagg ggacgcaggg cctggttgat gcgggcgagg aacttctccg cggtctcggc
     3541 gcgctcctcg gcgcggcgag cgcggtcctc ggcgg
//
LOCUS       DASQWN010000219         4286 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_632649, whole genome shotgun sequence.
ACCESSION   DASQWN010000219 DASQWN010000000
VERSION     DASQWN010000219.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 4286)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4286)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4286
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_632649"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            70..402
                     /locus_tag="VE686_04100"
     CDS             70..402
                     /locus_tag="VE686_04100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015930670.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1467 family protein"
                     /protein_id="HYY83666.1"
                     /translation="MQVVSWIARSRAAAALVVALLAAGAIVVGITALGVTVAGGIALY
                     FVVWWIMLFAVLPFGARTQAEDGDIVAGSDPGAPSTPRLAEKAVWTTIVADVVFLGAL
                     AIMPLAGL"
     gene            complement(661..1008)
                     /locus_tag="VE686_04105"
     CDS             complement(661..1008)
                     /locus_tag="VE686_04105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015933485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY83667.1"
                     /translation="MNDFPKVLVVDDGERNADRALSAELAELGFASVTASLEAADDVL
                     ELIPSPAAIFVQVPKDSSPAQQKRFMDLAERLKAQEGASGIPVIVVEGSPAGGYAAAL
                     QGPFAHAFSTAAP"
     gene            complement(1176..3002)
                     /locus_tag="VE686_04110"
     CDS             complement(1176..3002)
                     /locus_tag="VE686_04110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016919912.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="extracellular solute-binding protein"
                     /protein_id="HYY83668.1"
                     /translation="MSDGRLGRTVLLAAALLVGGPLSAAGASAPRAGLAMHGEPALPM
                     DFSHFPYANPQAPKGGRLVLGIQGTFDSLNPYTVRGVAPDILPRYVLQSLMARSLDEP
                     FTMYPLVAQSFESPPDRSFIVFNLDPRARFSDGHRLTAHDVLFSFELLKTRGKPFLRA
                     SYGQVSAVSVENEHRIRFDLTGSDDRELPLLLALLPLFPAHATDAERFEETTLAPPVG
                     SGPYVVSEVEPGARIVLKRNPNFWAGDLPAARGLFNFDEVRLDFYRDANSLFEAFKAG
                     LYDFRIEGDPTRWTTGYDIPAVRDGRVVREALPLRTPQGMNGFVFNTRRPLLQDVRVR
                     EALGYVLDFEWVNRNLYFGALRRSASYFGASVLSAHGRPADAREREILSRHPGVVRDD
                     ILEGRWSPAGANGSGRDRERPRQALALLAQAGWRLEGDTLRRRDTREPFAFEILVINR
                     AQERLALNYAQSLRRIGVRARVRLVDDVQFWRRLSGFDFDMVQWTWPVSPSPGNEQRN
                     RWGSEAAGRSGSLNLAGARSPAIDEAIDAVLAAHDVGGFEAAVRALDRVLLSGFYVVP
                     LFYLPDQWIAYSASLGRPSVTPLFGPAVETWWRDPGTSGTGR"
     gene            3219..4034
                     /locus_tag="VE686_04115"
     CDS             3219..4034
                     /locus_tag="VE686_04115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012753311.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="invasion associated locus B family protein"
                     /protein_id="HYY83669.1"
                     /translation="MLFTTRLARVGGPIGLAAALSMGAAGVALAQQPQRPAQRAPAQT
                     APAQAAPAQPAPAQQPAPAAGAQQGGDTGPMIVQVKSEPSQADWTKVCGKDQASNSEV
                     CYTTRDFVSDQGQPVLAVAVYDAKGGPQGPSKILRFLTPLGLLLQPGVRFAVDQQQAT
                     PGRYAICFPNGCFAEAQVKDDVINGLKKGTTLNVSVQNQVSREVTFAVPLAGFGKAFD
                     GPPIDPEVLKKQQEDLQKELERRSDEMRKKLESGAPSGGAPTASAPAPAPGSK"
     gene            complement(4125..>4286)
                     /locus_tag="VE686_04120"
     CDS             complement(4125..>4286)
                     /locus_tag="VE686_04120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012044213.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hemimethylated DNA-binding YccV-like
                     domain-containing protein"
                     /protein_id="HYY83670.1"
                     /translation="LFAENAQTEYLAYVSEQNLLPDTSGEPLRSPQVRDIFERDPSGS
                     YRPKGSLAN"
BASE COUNT          693 a         1448 c         1521 g          624 t
ORIGIN      
        1 ccgtgctgtt cctccatccg aaggacttct gcggcacgct cgtcgagctc gagcaggcct
       61 gagcgcgcga tgcaggttgt gagctggatc gcacggtccc gggccgccgc cgcgcttgtc
      121 gtggcgctcc tcgccgctgg cgcgatcgtg gtcggcatca cggcgctcgg ggtcactgtc
      181 gcgggcggca tcgccctcta cttcgtcgtg tggtggatca tgctgttcgc cgtgctgccg
      241 ttcggcgcgc ggacccaggc ggaagatggg gacatcgtag cggggtccga cccaggcgcg
      301 ccctcgacgc cgcgccttgc cgagaaggct gtctggacga cgatcgtcgc cgacgtggtc
      361 ttcctcggcg ccctcgcgat catgccgctg gccggtctct gaggcgcgtc agaaaagaaa
      421 aaagcaaggc tctcgccttg ctcgatgcgc ctgatggcgc ggttgtcccg ggctcttgag
      481 gccactgccc cataacgagg cagatacggg cgctgtttcc tcccgaacac tcggaccact
      541 gcgcacctga cgcaatcaaa ttgcgcaaag cacgcccggc gagccgctta tagtgcaggc
      601 cctaacatat gtcacgccgc caacagcgcc gtggcgagat attttgcagg tcgtggctgc
      661 tcagggggca gcggtggaga aggcgtgggc gaaggggccc tgcaaagccg ccgcataacc
      721 gccggccggc gagccctcga ccacgatcac cggaatgccg gaggctcctt cctgggcctt
      781 caggcgctcg gcgagatcca tgaaccgctt ctgctgcgcc ggcgagctgt ctttgggaac
      841 ctgcacgaag attgccgccg gggacgggat gagctcgaga acgtcgtccg ccgcctcgag
      901 agaggcggtt acgctcgcaa agccgagttc ggccagctcg gccgagagcg cgcggtctgc
      961 gttgcgctcg ccgtcgtcga cgacgaggac cttcggaaaa tcgttcatga cccttctttc
     1021 gcccgcaaga cgggggcgcc ttgaagcggg gtgagaacgt tcgaacctcg caagttgttc
     1081 ctcgccttgg ctcggccgtt ccgccttgag gggctgctgt ggcacggcgg ttcggcgcga
     1141 gtccagggct cccggccatc catccacgag ttgagtcaac ggcccgttcc ggacgtcccg
     1201 gggtcgcgcc accaagtctc gacggcaggg ccgaacagcg gtgtcacgga cggccggccg
     1261 agggacgcgc tgtaggcgat ccactggtcc gggaggtaga acagggggac gacgtagaag
     1321 cctgagagaa gcacccggtc gagcgcgcgg acggcggctt cgaagccgcc gacgtcgtgt
     1381 gcggccagga ccgcgtcgat cgcctcgtcg atggccgggg agcgcgcgcc ggcaaggttg
     1441 agcgacccgc tgcggccggc ggcctccgat ccccagcgat tgcgctgctc gttgccggga
     1501 gacggcgaca cgggccaggt ccactgcacc atgtcgaagt cgaagcccga gagccgacgc
     1561 cagaactgca cgtcgtcgac gaggcgcacc cgcgctcgca cgccgatgcg gcgcaaggat
     1621 tgggcatagt tgagtgcaag ccgctcctgg gcgcggttga tcaccagaat ctcgaaggcg
     1681 aagggctcgc gcgtgtcgcg ccgccgcaag gtgtcgccct cgaggcgcca gccggcttgc
     1741 gcgagaagcg caagggcttg gcgcggccgc tcgcggtcgc gccccgaacc gttggcgccc
     1801 gccggcgacc agcgcccctc caggatgtcg tcccgcacaa ctcccgggtg acgggacagg
     1861 atctcgcgct cccgggcgtc cgccggccgg ccgtgggcgg acagtaccga ggcgccgaag
     1921 tagctcgcgg accggcgcag ggcgccgaag tagaggttgc ggttcaccca ctcgaagtcc
     1981 aggacgtagc cgagcgcctc gcgcacgcgg acgtcctgca acagcggccg gcgcgtgttg
     2041 aagacgaagc cgttcatccc ctgcggggtc cgcagcggca gggcctcccg cacgaccctc
     2101 ccgtcgcgga cggcggggat gtcgtagccg gtcgtccacc gagtcggatc cccctcgatg
     2161 cggaagtcgt acagccccgc cttgaaagcc tcgaacaggc tgttggcatc gcggtagaaa
     2221 tcgaggcgga cctcgtcgaa gttgaacagc ccccgggccg caggcaggtc gccggcccag
     2281 aagttcgggt tccgcttcag gacgatgcgc gcgcccggct cgacctcgct cacgacatag
     2341 gggcccgagc ccaccggcgg cgcgagcgtg gtctcctcga accgctccgc atccgtcgcg
     2401 tgggccggga acaggggcag aagcgcgagg agaaggggca actcgcgatc gtcagatccg
     2461 gtcaggtcga agcggatgcg gtgctcgttc tcgacggaga cggcgctcac ctggccgtag
     2521 ctcgcacgca ggaagggctt gccgcgggtc ttgaggagtt cgaacgagaa caggacatcg
     2581 tgcgcagtga gccggtgccc gtccgagaag cgcgcccgcg gatcgagatt gaagacgatg
     2641 aagctgcggt cgggtggcga ctcgaacgac tgggccacga gcgggtacat ggtgaaaggc
     2701 tcgtcgagcg atcgcgccat caggctctgc agcacgtagc ggggcaggat gtcgggcgcg
     2761 acgccgcgca ccgtgtaggg gttcaagctg tcgaaggtgc cctggatgcc aagcacgagc
     2821 cgcccgccct tgggcgcctg cgggttggcg taggggaagt ggctgaagtc catcggcagg
     2881 gccggctcgc cgtgcatggc aagcccggct cggggcgcgg aggcgcccgc ggcggacagc
     2941 ggtcccccca ccaggagcgc tgccgccagc aggacagttc ggccgaggcg gccgtcggac
     3001 atggaaatac cgattcgcct atctgccgga ccttatgcca gtaaatcggc ctgcgatgac
     3061 tggaatcccg gccctgggca gggtaaaggg acggcgccgc gcgccttgtc ctcgcctcaa
     3121 tcggccatga tgcagcgcgg cacaagaata cgatgcacga agccatccgc cgcgccgctc
     3181 aggcgacgca cggcgacgat cgaagaggaa ttcaggggat gttgttcacg actcgtctcg
     3241 cccgtgtggg agggccgatc ggcctcgccg ccgccctgtc gatgggtgcc gccggcgttg
     3301 cgctggcgca gcagcctcag cgcccggcgc agcgcgctcc ggcccagacg gcccctgcgc
     3361 aggcggcccc ggcccagccc gcgccggcgc agcagccggc cccggcggcc ggcgcccagc
     3421 agggcggcga caccggcccg atgatcgtcc aggtcaagtc ggagccgtcc caggccgatt
     3481 ggaccaaggt ctgcggcaag gaccaggcga gcaacagcga ggtctgctac acgacccgcg
     3541 acttcgtctc ggaccagggt cagccggtgc tcgccgttgc agtctatgac gccaagggcg
     3601 gcccgcaggg cccgagcaag atcctgcgct ttctcacgcc gctcgggctt ctgctccagc
     3661 ccggcgtgcg cttcgccgtc gaccagcagc aggcgacccc cggtcgctac gcgatctgct
     3721 tcccgaacgg ctgcttcgcc gaggcgcagg tgaaggacga cgtcatcaac ggcctgaaga
     3781 agggcaccac gctgaacgtc agcgtccaga accaggtctc gcgcgaggtc accttcgcgg
     3841 tgccgctcgc cggtttcggc aaggccttcg acggcccgcc gatcgatccc gaggtgctga
     3901 agaagcagca ggaggatctc cagaaggagc tcgagcggcg ctcggacgag atgcgcaaga
     3961 agctcgagag cggcgccccg agcggcggtg ccccgaccgc ctcggccccg gccccggcgc
     4021 ccggctcgaa gtaggcttcg gcacggcgcc cgatcgccgg cctcatcttc acgaaaacgc
     4081 cgggcgggaa gcccggcgtt tttcgttccg gcctccgacg aagcctagtt cgcgaggctg
     4141 cccttcggcc ggtagctgcc ggaggggtcg cgctcgaaga tgtcgcgaac ctgggggctg
     4201 cgcaggggct cgcccgaggt gtccggcaac aggttctgct ccgagacgta ggccaggtac
     4261 tcggtctgcg cgttctcggc gaagag
//
LOCUS       DASQWN010000220         3014 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1030427, whole genome shotgun sequence.
ACCESSION   DASQWN010000220 DASQWN010000000
VERSION     DASQWN010000220.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 3014)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3014)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3014
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1030427"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2452)
                     /locus_tag="VE686_04125"
     CDS             complement(<1..2452)
                     /locus_tag="VE686_04125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018458527.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051139 - metal cation:proton antiporter
                     activity [Evidence IEA];
                     GO_process: GO:0098662 - inorganic cation transmembrane
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="monovalent cation/H+ antiporter subunit A"
                     /protein_id="HYY83671.1"
                     /translation="MSDPILLITLLALPFVGSCVAALLRSNARNAAAWLAGAVALLGL
                     VLVGVAYPRVVDGQVVSYKLEWVPQLGVNFALRMDGFAWVLAMLVTGIGFLVVLYARY
                     YMSPTDPVPRFFSFLLAFMGSMLGIVLSGDLIQLVFFWEMTSLFSFLLIGYWHQNAKA
                     RDGARMALIVTSSGGLCLFAGVLLVGHIVGSYDLDIVLASGQAIRSHHLYLPALALVL
                     IGAFTKSAQFPFHFWLPHAMAAPTPVSAYLHSATMVKAGVFLLIRLWPAMGGTNEWLW
                     LVGSAGLITFILGAFVAVFQHDLKGLLAYSTISHLGLITLLIGLDTPLGQIAAIFHLV
                     NHAIFKASLFMAAGIIDHESGTRDIRLLSGLRRFMPITATLAMVAAASMAGVPLLNGF
                     LSKEMFFAETIEIHDNSRVDQALPYIVTLASMLTVAYSIRFIRDVFFGPVPQGLPRTP
                     SEPPFLMRLPAELLVVACLVIGIAPALTVGPVLEAAVRAILGPAPPEYSLAVWHGFTP
                     ELLMSVVAMVGGAALYFMLRSYVLTIDGAPLLRHIKGQRIFERVLLTLSWKVARRLEQ
                     VLGTRNLQPQLRLLLAVAFVAGLAPLYARGVPFASLAMPEIDTAFALVWAVGIACAVG
                     AAFQAKFHRLAALILLGGAGLVTCITFVWLSAPDLALTQLVVETVTTVLLLLGLRWLP
                     KRLEQSPQRHRTVRWYRVRDFAMAAGVGLGLAALAYAVMIAPAPERISRYFVENAYTG
                     GGGTNIVNVILVDFRGFDTFGEITVLAVVALTVYALLRRFRPAPESIPVPEQQRTQNV
                     FDDGHADRQRGDTINDAMA"
     gene            2647..>3014
                     /locus_tag="VE686_04130"
     CDS             2647..>3014
                     /locus_tag="VE686_04130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020177312.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trehalase-like domain-containing protein"
                     /protein_id="HYY83672.1"
                     /translation="MHLPIEDYALIGDCESAALVGRDGSIDWLCWPRFDSPACFAALL
                     GSSDHGRWLVGPCHEAMRVSRRYRQGTLILETDFETPDGAVTVTDFMPPRDAASDLVR
                     IVRGTRGQGAMRTELILRFD"
BASE COUNT          626 a          934 c         1004 g          450 t
ORIGIN      
        1 tcgccatcgc gtcgttgatg gtgtcgcctc tctgacgatc ggcatggccg tcgtcgaaga
       61 cgttttgggt ccgctgctgc tccggaacgg gtatgctctc gggcgccggg cggaaccgcc
      121 gcaagagcgc gtagaccgtc agcgccacaa ccgcgagaac cgtgatctcc ccgaaggtgt
      181 cgaacccgcg gaagtcgacg aggatgacgt tcacgatgtt ggtaccgccg ccgcccgtgt
      241 aggcgttctc aacgaagtac cgcgagatgc gctcgggtgc gggcgctatc atcacggcat
      301 acgcaagcgc cgccagtccc agtcccactc ccgccgccat ggcgaaatcg cgcacgcggt
      361 accaacgaac agttcggtgc ctttgcggac tctgctcgag gcgcttgggg agccatcgca
      421 gaccgaggag cagcagcacc gttgtcacgg tctcgaccac gagctgggtc agggccaagt
      481 caggcgctga caaccagacg aaggtgatgc acgtgacgag gcccgcgccg ccgaggagga
      541 tcagcgccgc gaggcgatga aacttggcct ggaaagcagc accgaccgcg caggcgatgc
      601 cgacagccca gacgagggcg aaggcggtgt cgatctccgg cattgccagg ctcgcaaacg
      661 gaaccccccg tgcgtacagc ggcgcaagac ccgccacgaa cgcgacggcg agcaaaagac
      721 ggagttgcgg ctgaaggttg cgcgttccaa gaacctgctc gagccgtctc gcgaccttcc
      781 atgacaacgt caggagcacg cgttcgaaga tgcgctgccc tttgatgtgc cgcagcaacg
      841 gtgccccgtc gatggtcagc acgtacgacc gcagcatgaa atacagggcc gcgccgccga
      901 ccatggcaac gacgctcatc aggagctctg gagtaaaccc gtgccacacg gcgaggctgt
      961 actccggagg cgcgggcccg agaatcgcac ggacggcagc ctcgagcacc gggccgacgg
     1021 tcagcgcggg tgctatcccg atgaccaggc acgcgaccac gagaagctcg gccggtagcc
     1081 gcatcaggaa tggcggttcg ctcggagtgc ggggcaggcc ttgcggcaca gggccgaaga
     1141 acacgtctcg aatgaagcgg atcgaatatg cgacggtcag catgctggcc agggtcacga
     1201 tgtaggggag cgcctgatcg acccgcgagt tatcgtggat ctcgatcgtc tcggcgaaga
     1261 acatctcctt ggacaggaag ccgttgagca gcggaactcc cgccatcgag gcggcggcga
     1321 ccatcgccag ggttgcggtg atcggcatga agcgccgcag cccgctcagg aggcgaatat
     1381 cacgcgtgcc gctttcgtga tcgatgatgc ccgccgccat gaacagcgac gccttgaaga
     1441 ttgcgtggtt gaccaggtgg aagattgcgg cgatctgccc aagcggcgtg tccagcccga
     1501 tcaagagggt gatcagcccg aggtggctga tagtggagta ggcaagcagg cccttcaggt
     1561 catgttggaa cacggccacg aacgcgccga ggatgaaggt gatcaggccg gccgatccca
     1621 cgagccagag ccactcgttc gttcctccca tcgcgggcca aagccggatc agcaggaaga
     1681 cgccagcctt caccatggtg gccgaatgca ggtaggcgga cacaggagtt ggagccgcca
     1741 tcgcgtgcgg cagccagaag tggaagggga actgcgcgct cttggtgaaa gcgccgatga
     1801 gaacgagagc cagggccggg aggtagaggt ggtgcgaacg gatcgcctgg ccggatgcca
     1861 agacgatatc gagatcgtag ctgccgacga tgtggccaac cagaagtacc cctgcaaaca
     1921 ggcagagccc cccgctcgac gtcacgatca aagccattcg cgcgccgtcg cgggctttcg
     1981 cgttttgatg ccaatagccg atcagcagaa atgagaagag gcttgtcatc tcccaaaaga
     2041 agacgagttg gatcaagtcg cccgacagga cgatgccgag catggagccc atgaaggcga
     2101 gcaagaacga gaagaagcgc ggcaccgggt cggttggaga catgtagtag cgcgcgtaga
     2161 gcacgacgag gaacccgatg ccggtaacca gcatcgcgag aacccaggca aaaccatcca
     2221 tccgcagcgc gaagttgact ccgagctgag gcacccattc cagtttgtac gaaacgactt
     2281 gcccgtccac gacccgggga taagcgacgc ccaccagcac gaggccgagg agcgcgacgg
     2341 cgccggccaa ccaagctgcc gcgttgcgtg cgttcgaccg cagtagggca gcgacgcagc
     2401 ttccgacgaa cggaagcgca aggagcgtga tgaggaggat cggatcggac atgcgcgctg
     2461 tgcgccttga ggaagagagc tccagaggtt cgtcgcgccc atatggttga atcgggcttg
     2521 ctcacgcaag ctgacgctcg agagggtccg ccggggcgac tgcagcacaa ggccgtggga
     2581 actgccgaac cgggaagcgc ttgctcctgc cgcaacttcc gccaccaccg cgcccgatga
     2641 gcgaccatgc acctgcccat tgaggactat gccctgattg gcgactgcga gagtgccgcg
     2701 ctcgtcgggc gcgacgggtc gatcgactgg ctttgctggc cgcggttcga ttcccccgcc
     2761 tgcttcgccg ccttgctcgg atcctctgat catggccgct ggctcgtcgg cccttgccac
     2821 gaggcaatgc gcgtctcgcg tcgctatcgc caggggacgc tgattttgga gacggacttt
     2881 gagacgccgg acggcgccgt gacagtaacc gacttcatgc cgccccggga cgccgcatcc
     2941 gacctcgtgc ggatcgtaag gggtactcgc gggcagggcg ccatgcgcac ggaactcatc
     3001 ctgcgcttcg acta
//
LOCUS       DASQWN010000221         2011 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1030464, whole genome shotgun sequence.
ACCESSION   DASQWN010000221 DASQWN010000000
VERSION     DASQWN010000221.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2011)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2011)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2011
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1030464"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..425
                     /locus_tag="VE686_04135"
     CDS             <1..425
                     /locus_tag="VE686_04135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_041371609.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="IS701 family transposase"
                     /protein_id="HYY83673.1"
                     /translation="VWLVGEWRSSGERKYYLSNLPPRTSLRALAAAIKARWVCEQGHQ
                     QLKQELGLGHFEGRSWTGLHRHALMTCMAFAYLQHRRLAGQRPARSGKNAGLYSGTAT
                     ITEPAGRAPRHHGAPVRKPRHADPLSALQTALPTASPS"
     gene            complement(694..1728)
                     /locus_tag="VE686_04140"
     CDS             complement(694..1728)
                     /locus_tag="VE686_04140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012976683.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IS110 family transposase"
                     /protein_id="HYY83674.1"
                     /translation="MGRHYVGLDVSLETTSVCVLDETGAAVWRGKVASTPEAIAAAVR
                     ARAPEVERIGLETGPLCTWHWHALRQAGLPVVCLDARHAKAALSLQLNKTDANDAYGL
                     AQIVRTGWYKEVAVKGLDSHRVRALLSSRAQLVDMRRDLGTKIRGLLKTFGRVVGKVG
                     ERGYEARARELAAGEAGLEEAVSALLAVRERLEQQIRTLDELILELARRSDACRRLTT
                     IPGVGTLTALSFVAAVGDPARFSKSATVGAYFGLTPRRHQSGETDRDGKISRCGDVLT
                     RTYLFEAAGVLLSRVARWSALKAWGTRLAKRVGGKKARVALARKLAVLMHRVWVDGTE
                     FRWSKEAATA"
BASE COUNT          272 a          729 c          696 g          314 t
ORIGIN      
        1 aggtctggtt ggtcggcgag tggcgctcga gtggcgagcg caagtactac ctcagcaacc
       61 tgccgccgcg gacctcgctg cgggcgctgg ctgccgcgat caaggcgcgc tgggtgtgcg
      121 agcaggggca ccagcaactc aagcaggaac tgggcctcgg ccatttcgag ggtcggtcct
      181 ggactggcct gcaccggcac gcgctgatga cctgcatggc cttcgcctac ttgcagcacc
      241 gtcgccttgc tgggcagcgc ccggcgaggt cggggaaaaa tgcgggcctg tattccggga
      301 ccgccaccat caccgagcct gccggccgtg cgccgcgcca tcatggcgcg cctgttcgca
      361 aaccccgtca cgccgatccg ctgtccgcac tgcagacagc gcttccgacc gcctctccgt
      421 cctgaactgc ccaggtagtg ttagatgccg ttctctaatc gcggggagag atgcaagccc
      481 tttgtgcggc gtcgccgatg ttcctgccgg ctccatggtt ctctccgcgg tcggcacggg
      541 gccgccgcat gtaggcgttc aggacgtggg cgccccaatg taacggacgc ggttcctgcc
      601 ggcagggccg ccttgccatc tccggggtcg cccacgcctt cgtcccggca gggacacggc
      661 tccgccggac ggcggatctc gctccggtcg gggtcaggcg gtggcggcct ccttcgacca
      721 acggaactcg gtgccgtcga cccagacccg gtgcatgagc acggcgagct tcctggcgag
      781 tgccacgcgc gccttcttgc cgccgacccg cttggcgagg cgcgtgcccc aggccttgag
      841 ggcggaccac cgcgccaccc gcgacaggag cacgccggcc gcctcgaaca ggtaggtccg
      901 ggtcagcacg tcgccgcacc tcgagatctt gccgtcgcgg tcggtctcgc cggactggtg
      961 ccgcctcggc gtcaggccga agtacgcgcc caccgtggcg gacttgctga aacgggccgg
     1021 gtcgcccacc gcggcgacga agctgagcgc cgtcagggtg cccaccccgg ggatggtcgt
     1081 tagccggcgg caggcgtcgc tgcgcctggc cagctccaga atgagctcgt cgagcgtcct
     1141 gatctgctgc tccaggcgct cgcgcacggc gagcagggcc gagaccgcct cctccaggcc
     1201 cgcctcgccg gcggcgagct cgcgcgcgcg cgcctcgtat ccgcgctcgc ccactttgcc
     1261 gaccaccctc ccgaaggtct tcaggagccc tcggatcttg gtcccgaggt cgcgccgcat
     1321 gtcgacgagc tgggcgcggg acgacagcag cgcgcgcacc cggtggctgt cgaggccctt
     1381 gaccgcgacc tctttgtacc agcccgtccg cacgatctga gcgagaccgt aggcgtcgtt
     1441 cgcgtcggtc ttgttcagct gcagggacag cgccgccttg gcgtgccgcg cgtcgaggca
     1501 gacgaccgga aggccggctt ggcgcagcgc gtgccagtgc caggtgcaca gcgggcccgt
     1561 ctccaggccg atgcgctcga cctcgggtgc gcgcgcccga acggccgcgg cgatcgcttc
     1621 gggcgtggag gccaccttgc cgcgccagac ggccgcgccc gtctcgtcga gcacgcacac
     1681 cgacgtcgtc tcgagcgaga cgtccaggcc cacgtagtgc cgccccatgg ctctcctcct
     1741 cgatctccaa ggggctcttg ttatccggat cgctgcggcc cccgcgatta cgccatgtaa
     1801 cgggccggcc accggcgtag gtggcgaggg tggtcgtccc tcagactgat ggtgtcgtgg
     1861 acggggtcgg gcccgaaggc ctgccccaag catcatcgag ggacgaccat ggagcaccat
     1921 gccgggatcg acgtgtcgct ctgatgtccg ccgtcaagag tatcgcacgc gcggcggcgg
     1981 ccgctctcgg cggtgaccga ggcgaggccg c
//
LOCUS       DASQWN010000222         2413 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1228843, whole genome shotgun sequence.
ACCESSION   DASQWN010000222 DASQWN010000000
VERSION     DASQWN010000222.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2413)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2413)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2413
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1228843"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            301..2232
                     /locus_tag="VE686_04145"
     CDS             301..2232
                     /locus_tag="VE686_04145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014497486.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EAL domain-containing protein"
                     /protein_id="HYY83675.1"
                     /translation="MLAALDGDLSLVAGPVLTEQMAGRVRVEQVAQVARYTPGMMLAN
                     ACAAPVLAAALWPSPARWAALAWAAVMIAIAAAFGLGQRRRKARPKPTSASGRGVRLT
                     IRNAAVLGLLWSSAPVTFFGDATHGGQLVIASVSAGVLCAGALALASIPLAAMAFTVP
                     IYAAVGTNLIVDGDPTSLFGAVLVLVYAAIITVAVFSHGLHLVARTVSHIETEQRVRT
                     DALTGLPNRVEFQDRLEALCAAASNDGTPFAVLCLDLDSFKAVNDTLGHEAGDQLLKE
                     AASRLRRCARSGDLVARLGGDEFAILASGAARFFAGQLAARITEAFQEPFFLDGKETI
                     TTVSVGVALAPHDGLATRSLMKCADIALYRAKHSRGGSFQMFEPTLEQHARERRATGQ
                     QLRNALHRGELRLAFQPFLHLRENRLVGCEALVRWQHPHRGLISPAEFIPIAEETGLI
                     QPLGEWVLREACRVARSWPDEVRVAVNLSPAQLREPGIVSTVLNALAETGIAPSRLEV
                     EVTETALISDEGTSVAVLRALSQLGIQVALDDFGTGYSSLSYLRKLPLNRIKIDRSFV
                     ADLLHDPDARSIVKAVISLADDLRMSTTAEGVEEVEQLAALREQNCTEAQGFLISRPI
                     SADEVTELLLSPKFSSRAA"
BASE COUNT          376 a          816 c          763 g          458 t
ORIGIN      
        1 gagagattga gcctctgaca tcggagctct ccgatcgcct gatccacttc catcagaata
       61 ccgcagaggc ggctgccgac ggtgcgtttg cgcacgcagc tctcaaaacg agatgacgga
      121 cctctcgagc gatgctgcgc gcctccacgg accgaggcgt ggaggctgac gcggaggcgt
      181 ccacggagcg ggcatcggcc tgggcggagt tgggcatcta acgaaatctc aactctcctg
      241 ctttattttc ccaagcgtca tcttggtcat gcctcagtgc acccacctat ccccgcgcgc
      301 gtgctagccg cgctcgacgg cgacctctcg ctcgtcgccg gccccgttct gactgaacag
      361 atggcgggac gggtgcgcgt cgagcaggtc gcccaagtcg cacgctacac gcccgggatg
      421 atgctcgcga acgcctgcgc cgctccggtc cttgccgctg cgctctggcc gtccccggcg
      481 cggtgggccg ctctcgcctg ggccgccgtc atgatcgcaa tcgccgccgc cttcggtttg
      541 gggcagcgac ggcgaaaggc ccgcccgaag cccacctctg cgtcaggccg gggcgtccgc
      601 ctgaccattc ggaatgcagc cgtcctcggg ctgctgtggt cctctgcccc ggtcacattc
      661 ttcggggacg cgacgcacgg cggtcagctc gtgatcgcct ccgtgagcgc cggggtcctc
      721 tgcgccggcg cgctggcgct cgcgagtatc ccgctggcgg cgatggcttt caccgtcccc
      781 atttatgcag cagtcgggac gaacctcatc gtcgatggcg atccgacttc gctgttcggc
      841 gcagttcttg tgcttgtcta tgctgccatc atcactgtcg cggtgttttc gcatgggctc
      901 cacctggttg cccgaaccgt ttcgcacatc gagaccgagc agcgcgtgcg caccgacgcg
      961 ctcacggggt tgcccaaccg cgtcgagttc caggaccggc tcgaggcact ctgcgcggca
     1021 gcttcgaacg acggcactcc gttcgcggtg ctctgcctcg acctagacag cttcaaggcc
     1081 gtaaacgaca cgcttggcca cgaggcaggt gatcagcttc tcaaggaggc ggcctcgcgc
     1141 ctccgacgct gtgcgcgctc tggcgatctg gtcgctcggc tcggcggcga cgagttcgcc
     1201 atcttggctt cgggtgcggc gcgcttcttt gcaggccaac tggcggcgcg gatcaccgaa
     1261 gcctttcagg agcccttttt tctagacggc aaggaaacaa tcacgaccgt gagcgtcgga
     1321 gtggccctcg caccgcatga tggtcttgcc acccgctcgc tcatgaaatg cgccgatatt
     1381 gctctgtacc gtgcgaagca ctcgcgcggc ggttcgtttc agatgttcga gccgacgctg
     1441 gaacagcacg cccgcgaacg gcgcgccacc gggcagcaac tacgcaacgc gcttcatcgc
     1501 ggcgagcttc gcttggcctt tcagccattc ctgcacttgc gcgaaaaccg gctggtcggc
     1561 tgcgaggctc tcgttcggtg gcagcatccg caccgagggc tcatcagtcc tgccgagttc
     1621 atccccattg cggaggagac gggccttatc cagcccctcg gagagtgggt gttgcgagag
     1681 gcgtgccgcg tcgcccgctc ttggccggat gaagtccgcg tggccgtcaa tctctccccg
     1741 gcccaactcc gcgagcctgg catcgtctcg actgttctga acgcccttgc cgagaccggg
     1801 atagcccctt cccgtctcga agtggaggtg acggagaccg ccctgatctc cgatgagggc
     1861 acgtcggtcg ccgtcctcag ggcgctgtcc caactgggca tacaggtcgc tctggatgac
     1921 ttcgggacgg gctactcgtc gctgagctat ctgcgcaagc tgccgctcaa ccgtatcaag
     1981 atcgaccgat cgttcgtcgc cgatctcctc cacgacccgg atgcacgctc catcgtcaag
     2041 gccgtgatct cgctggcaga cgatctgcgg atgagcacga cagcggaggg cgtggaggag
     2101 gttgagcagc ttgccgctct tcgagagcag aattgcacgg aggcgcaggg cttcttgata
     2161 agcaggccga tcagcgccga cgaggtcacc gagctactct tgagcccgaa attcagcagc
     2221 cgtgctgctt agcggggttc cggctccgtc cgagcgctac atggaatcct gcaccgccca
     2281 gagccgcttt cgaacccatc tttgcggcgc ggcggctatg ccgtggcccg aggggaggct
     2341 gtgcgcagct cggcaacgag ccgcgccttg atgacgggct tacggagaac gcgcagcgtc
     2401 gggtgacgct tca
//
LOCUS       DASQWN010000223         5898 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_514843, whole genome shotgun sequence.
ACCESSION   DASQWN010000223 DASQWN010000000
VERSION     DASQWN010000223.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 5898)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5898)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5898
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_514843"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..190
                     /locus_tag="VE686_04150"
     CDS             <1..190
                     /locus_tag="VE686_04150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018700577.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HYY83676.1"
                     /translation="PAVAAMLGRWRSSNEVVGEALAFMRTENASADAAAARFLKARPE
                     VWAPWVPPEVAERVKAGL"
     gene            249..1106
                     /locus_tag="VE686_04155"
     CDS             249..1106
                     /locus_tag="VE686_04155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015373553.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="proline/glycine betaine ABC transporter
                     permease"
                     /protein_id="HYY83677.1"
                     /translation="MFFDAGSLVRTGVNGFLDWLVAHHGDAFEAAAGMLLKPLVALEQ
                     GLRLVPPWIAILIVAALAFAATRRAVPTLAITGCLYLVGCLGLWEQAMQTVAILSVAV
                     ALAVAIGLPVGIVSARSAWLRAGITPLLDLMQTIPSFVYLIPAAMLFGLGKVPAIVAT
                     VIYATPPLIRLTDLGLRQVDRQLTEAAKVLGANRWQVLRHVQLPLALPSIMQGVNQTT
                     MMALGMVVIASMIGARGIGETVLLGLQRADSGQGAVGGLGIVLLAIVFDRITQGFGNR
                     VPRTKAPGV"
     gene            1279..4047
                     /locus_tag="VE686_04160"
     CDS             1279..4047
                     /locus_tag="VE686_04160"
                     /inference="COORDINATES: protein motif:HMM:NF012772.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EAL domain-containing protein"
                     /protein_id="HYY83678.1"
                     /translation="MTRGRSLRIPILVLILLAIGPLLVARFWQIGLEAERAVAVAQDE
                     AAVHAGLAAAQHRELIARTKTFLDVLARVPVVRRTLVDQCHMLLRDLARNAPWQRRLW
                     VVRPDGTAACGSHSPRVDLNVADREYFRKAVATQSFVVSDYIRSKIQDEPIIVAAMPV
                     IDEDGAVEAVALATLNVGLSEYPLLGVDQSSDSMIMVDRNNVVVSWRTMTEADVPVAA
                     AGTALPEGPLATLLSSHAKHGEAPGPDGIERIWGVASISEPAGRIAIGVSKAEVVAHA
                     RSSAAKSIGIAAAVGALAALAVWFGAELLLVRNIRTLADAANQIGRGNLGARPQLPAS
                     AGELQLVARALSDMASGLEEREGELRASRVALDEKTAILEATLEHMDQGLVMVDSNST
                     VRVCNARAMDLLGLPPALMLSRPSIREVLKYQLGIGEFDAFPEHLRKRAVEEEFTARQ
                     HLYERERPNGTILEVRTTPLPTGGAVRTYTDLTERKLAERRILHTARHDVLTDLPNRL
                     LFRERLEEALAESQRSGEQFAVLWLDLDRFKAVNDALGHGVGDELLVAVADRIRSILR
                     QGDVIARLGGDEFAILQRAPEQPVAASSLADRLIHELSQPFHVQDHQLHIGVSVGMAI
                     WPNDGADGDTLLKNADLALYRAKGDGRGVFRFFEAEMDAQVKTRRALELELRSALGDN
                     EFELYYQPLVGTRDRQVRAFEGLVRWNHPTRGLVSPDQFIPLAEETRLILPLGTWIIQ
                     QACREAAAWSSALGVAVNISAVQFASGSLVESVRQALEASGLRPERLQLEITETVLMD
                     NAELSGRIFKELHDLGVRIALDDFGTGYSSLSYLRSFAFDKIKIDRSFLRELAATSGS
                     LAFIRTIVSLGASLGIPVCAEGVETEQQFELVRSLGCSEAQGYLISRPQPAAAALAIL
                     KQPGAWAA"
     gene            complement(4058..5011)
                     /locus_tag="VE686_04165"
     CDS             complement(4058..5011)
                     /locus_tag="VE686_04165"
                     /inference="COORDINATES: protein motif:HMM:NF013247.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class IV"
                     /protein_id="HYY83679.1"
                     /translation="MTVRTNERLAWFNGEFMPEREVRIPFRDLSWVYGDGCFDMTRSF
                     GHRLFKVQEHVDRLYRSLKYLRIDPGFGPAKMCEVTEELFERNRHLLGEDDDYWVGQR
                     ISRGVKDVPGDNLDHHGPNVVLECAPLPFVQRAKLFKEGIRVMVPSHRRVPPDSLTPR
                     AKTHNYLNLVVANQEVQSVDPEAWAVLLDVNGNLCEGMGSNIFVVTDGEILTPREKFV
                     LPGVSRQTVIDLARAAGLVVREADIDLYDAYNAQEVFLTSTSLCICPVTKVNGAPIGP
                     EGQVWGPTTQRLADAFRDFVGHDFVDQYLKRYAEGMTARAF"
     gene            5212..5688
                     /locus_tag="VE686_04170"
     CDS             5212..5688
                     /locus_tag="VE686_04170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009490529.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Hsp20 family protein"
                     /protein_id="HYY83680.1"
                     /translation="MRTYDFSPLYRSTVGFDRLFELLDQTARGEAVPNWPPYNIERTG
                     DDEYRISMALAGFSPDEIELVQKENTLFVAGHKNADQQEGSEVLHRGIATRPFRQTFN
                     LADHVKVTDAKFEHGLLQIELKREVPEALKPRRIEIGVGSGVSQGKVTTLDQAKVA"
BASE COUNT          913 a         2057 c         1978 g          950 t
ORIGIN      
        1 tccggcggtc gcggcgatgc ttggccgctg gcgctcgagc aacgaggtcg tcggcgaggc
       61 tctcgccttc atgcgcaccg agaacgcgag cgccgacgct gctgcggcgc gcttcctcaa
      121 ggcccgcccg gaggtctggg cgccatgggt gccgccggaa gtcgccgaac gcgtgaaagc
      181 gggcctctga ggaggagctc agggcccggc caccgaactg tctcgatcac cgcgccagag
      241 gcaacgccat gttcttcgac gccgggagcc tggtgcgcac aggcgtgaac ggtttcctcg
      301 actggctcgt cgcccaccac ggcgatgcgt tcgaggcagc ggcgggcatg ctgctgaagc
      361 cgctcgtcgc cctggagcag gggctacggc tggtgccgcc ctggatcgcg atcctcatcg
      421 tggccgccct tgcgttcgcg gcgacgcgcc gcgcggtgcc gaccctcgcg atcacggggt
      481 gcctctatct cgtcgggtgc ctcggcctgt gggagcaggc gatgcagacc gtcgccatcc
      541 tgtcggtcgc cgtcgcgctc gccgtggcga tcggccttcc ggtcggcatc gtgagcgccc
      601 gcagcgcgtg gctgcgggcc ggcatcacgc cgttgctcga cctgatgcag acgatcccga
      661 gcttcgtcta ccttatcccc gccgccatgc tgttcgggct cggcaaggtg ccggcgatcg
      721 tggcaaccgt catctatgcc accccgccgc tcatccggct caccgacctc ggcctgcgcc
      781 aagtcgaccg ccagctcacg gaggcggcca aggtgctggg cgccaaccgc tggcaggtgc
      841 tgcgccacgt ccagctgcct ctggccctgc cgagcatcat gcagggcgtg aaccagacga
      901 ccatgatggc gctcggcatg gtcgtcatcg cctccatgat cggggcgcgg gggatcggcg
      961 agacggtgct cctcggcttg cagcgcgccg acagcggcca gggcgcggtc ggtggattgg
     1021 gcatcgtcct tctggccatc gtcttcgacc gcattacgca aggtttcggc aaccgcgttc
     1081 caaggacgaa ggcacccggg gtctgaccat cgcctgccgg ccggggatgt gccggggcgc
     1141 gcccaccctc gccggcaggc cacacgtgta attgcgcgtt ctacacggaa aaataacgcg
     1201 accggcccat gctcccgcta aaggggaggt atgcgggtgc agcactcgcc gcgggttggg
     1261 gagagaaccg tcaccgccgt gacacggggc agaagcctcc gcatccctat tctcgtgctg
     1321 atcctgctcg ccatcgggcc gcttctggtc gcccggttct ggcagatcgg tctcgaggcc
     1381 gagagggcgg ttgccgtcgc gcaggacgaa gccgccgtgc acgcgggcct cgcggcggcc
     1441 cagcaccggg agctgatcgc caggacgaag accttcctcg acgtgctcgc ccgcgtgccc
     1501 gtggtgcgcc ggactctcgt cgaccagtgc cacatgctcc tgcgcgacct cgcgcgcaac
     1561 gcgccctggc agcgtcgtct ctgggtcgtg cggccggacg gaacggccgc ctgcggaagc
     1621 cactcgcccc gggtggacct gaacgttgcc gaccgcgagt acttccgcaa ggccgtcgcg
     1681 acacagagct tcgtggtcag cgactacatt aggtcaaaga tccaggacga gccgatcatc
     1741 gtggccgcga tgcccgtcat cgacgaagac ggcgccgtcg aagcggtcgc cttggccacg
     1801 ttgaatgtgg ggctgtccga ataccctctg ctcggcgtgg accagagctc cgactcgatg
     1861 attatggtcg acaggaacaa tgtcgtcgtg tcctggcgaa ccatgacgga agccgatgtg
     1921 ccggtcgccg ccgcagggac cgctctgccc gagggaccgc ttgccacgct tctctcgagt
     1981 catgccaagc acggggaagc tcccgggccg gacgggatcg agaggatctg gggggtcgcc
     2041 agcatctcgg agccggcggg ccggatcgca atcggcgtgt cgaaggccga ggtggtcgcg
     2101 cacgcccgca gctcggcggc gaagagcatc ggcatcgccg ctgccgtcgg ggcccttgcg
     2161 gcgctggccg tgtggttcgg cgcggaactc ctcctcgtgc gcaacatccg cacgcttgcc
     2221 gacgccgcaa accagatcgg gcgcggcaac ctcggcgctc gcccgcagct gccggcatcc
     2281 gcgggcgagc ttcagctcgt cgcgcgggct ttgagcgaca tggcgagcgg gctcgaggag
     2341 cgcgagggag agttgcgcgc cagcagggtc gccctcgacg agaagacggc catcctggaa
     2401 gccaccctgg agcacatgga ccagggcctc gtgatggtcg acagcaattc caccgttcgc
     2461 gtgtgcaacg cccgcgccat ggacctgctc gggctcccgc cggcgctgat gctctctcgg
     2521 ccgagcatcc gcgaggtgct gaagtaccag ctcggcatcg gcgagttcga cgcctttccg
     2581 gagcacctca ggaagcgggc cgttgaagag gagttcaccg cccgtcaaca cctctacgag
     2641 cgcgagcggc cgaacgggac catcctcgag gtccgcacga cccccctccc gacgggcggc
     2701 gcggtgcgca cctacacgga tctgaccgag cgcaagctcg cggagcgccg catcctgcat
     2761 acggcgcggc acgatgtcct gaccgacctg cccaaccgcc ttctgttccg cgagaggctc
     2821 gaggaagccc tcgcggagtc gcagcgctcg ggcgagcagt tcgccgtgct gtggctcgat
     2881 ctcgaccggt tcaaggccgt caacgacgcc ctcgggcacg gcgtgggaga tgagctgctc
     2941 gttgccgtcg ccgaccgcat ccgcagcatc ctgcggcagg gcgacgtgat cgcccgcctc
     3001 ggcggcgacg agttcgcaat cctgcaacgg gcgcccgagc agcccgtcgc ggcgagcagc
     3061 ctcgccgacc gtctcatcca tgagctgtcg cagcccttcc acgtccagga tcatcagctc
     3121 cacatcggcg tgagcgtcgg catggcgatc tggccgaacg acggcgcgga cggcgacacg
     3181 ctcctgaaga acgcagacct tgcactctat cgcgccaagg gcgacggccg cggcgtcttc
     3241 cgcttcttcg aggccgagat ggacgcccag gtgaagaccc ggcgcgccct cgagctcgag
     3301 ctgaggagcg cgctcggcga caacgagttc gagctctact accagccgct cgtcggcacg
     3361 cgcgatcgcc aggtcagggc tttcgagggc ctggtgaggt ggaatcatcc gacgcgcggg
     3421 ctcgtgtcgc cggaccagtt catccccctc gccgaggaaa cccggttgat cctgccgctc
     3481 ggcacctgga tcatccagca ggcttgtcgc gaggcggcgg cctggtcgtc cgccctcggc
     3541 gtcgccgtca acatctcggc ggttcagttc gccagcggga gcttggtgga gagcgtgcgg
     3601 caggctctcg aggcctcggg cctgcggccg gagcgcctcc agcttgagat taccgaaacc
     3661 gtcctcatgg acaacgccga gctgtcgggc cgcatcttca aggaactgca cgacctcggc
     3721 gtccgcatcg ccctcgacga cttcggcacc ggctactcga gcctgagcta tctgcgctct
     3781 ttcgccttcg acaagatcaa gatcgatcgc tcgttcctgc gcgagcttgc cgccaccagc
     3841 ggatcgctgg ctttcatccg gaccatcgtg agcctcggcg catccctcgg cattccggtc
     3901 tgcgccgagg gcgtcgagac cgagcagcag ttcgagctcg tccggtcgct gggctgcagc
     3961 gaggcgcaag gctacctcat cagccggccc cagcctgccg ccgcggcgct cgccatcctc
     4021 aagcaacccg gagcctgggc cgcttgaccc gccggcttca gaacgcccgc gccgtcatgc
     4081 cctccgcgta gcgcttcagg tactggtcga cgaagtcgtg gccgacgaag tcgcggaacg
     4141 cgtcggccag gcgctgcgtc gtcggccccc acacctggcc ctcgggcccg atcggggcgc
     4201 cgttcacctt ggtgaccggg cagatgcaca gggacgtcga ggtcaggaaa acctcctgcg
     4261 cattgtaggc gtcgtagagg tcgatgtcgg cttcccgcac gacgagccct gccgcacgcg
     4321 ccaggtcgat gacggtctgc cggctgacgc ccggcagcac gaacttctcc cgcggggtca
     4381 gaatctcgcc gtccgtgacg acgaagatgt tcgatcccat gccctcgcag aggttgccgt
     4441 taacgtcgag cagcaccgcc caggcttccg gatcgacgct ctggacctcc tggttggcga
     4501 cgacgaggtt gaggtagttg tgcgtcttgg cccgcggcgt gagcgagtcc ggcggcacgc
     4561 ggcggtgcga cggcaccatg acgcggatgc cttccttgaa cagcttggcc cgctgcacga
     4621 agggcagggg cgcgcattcg aggaccacgt tcggcccatg gtggtcgagg ttgtcgcccg
     4681 gcacgtcctt gacgccgcgg ctgatgcgct gcccgaccca gtagtcgtcg tcctcgccga
     4741 gcagatgccg gttgcgctcg aagagctcct ccgtcacctc gcacatcttg gccggcccga
     4801 agcccgggtc gatgcgcagg tacttcagag agcggtagag ccggtcgacg tgctcctgca
     4861 ccttgaacag gcggtggccg aagctgcggg tcatgtcgaa gcagccgtcg ccgtagaccc
     4921 aggacaggtc gcggaagggg atgcggacct cgcgctccgg catgaactcg ccgttgaacc
     4981 acgccagccg ctcgttcgtc cgcaccgtca tcgtgaccct ccccgcaccg tgccgggggc
     5041 gatgctagag cctcgccgga gcgccgtcac gagggcgcgc gcgcaaggtc ttgacagccg
     5101 tttcgagctt cctaattctt taggcggcca aggccgaacg gcttgggttc gggtgccgga
     5161 tcggtgtccg gcgctctcat atccatgttg ctcttcaagg aggatgtggt catgagaacc
     5221 tacgacttct ctcccctcta ccgctcaacc gtcggcttcg acaggctgtt cgagctcctc
     5281 gaccagaccg cgcgcggcga ggcggtcccg aactggccgc cctacaacat tgagcggacc
     5341 ggcgacgacg agtaccgcat aagcatggcg ctggcgggct tctcacccga tgagatcgag
     5401 ctcgtccaaa aggaaaacac cctgttcgtc gccggccaca agaacgccga ccagcaggaa
     5461 ggctcagagg tgctgcaccg cggcatcgcc acgcggccgt tccggcagac gttcaatctc
     5521 gccgatcacg tcaaggtcac ggacgcgaag ttcgagcacg ggctgctgca gatcgagctc
     5581 aagcgcgagg tccccgaggc cctgaagccg cgccgtatcg agatcggcgt cgggtcgggc
     5641 gtgtcccagg gcaaggtgac gacgctcgat caggccaagg tcgcgtaagc gcttccgttc
     5701 cgacgcgctt tcgcacgccc ctcggtgtcg gtttctgccc gcccgagggg ctctcggcgt
     5761 ctcgcctcgc gagggaactg ccgcgcgttc cggttcgttg agccgcgccc ccgaagcgag
     5821 cggagcggcg acacgcggaa tggcccggga actcaccgat gcggacggca tcgcctggac
     5881 ttgcgtccag gcattcgc
//
LOCUS       DASQWN010000224         3760 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_633315, whole genome shotgun sequence.
ACCESSION   DASQWN010000224 DASQWN010000000
VERSION     DASQWN010000224.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 3760)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3760)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3760
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_633315"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..313)
                     /locus_tag="VE686_04175"
     CDS             complement(<1..313)
                     /locus_tag="VE686_04175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020186472.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxythreonine-4-phosphate dehydrogenase"
                     /protein_id="HYY83681.1"
                     /translation="MATPTTRPTIAFAMGDPAGISPELAAKVLALPEVRSAARLVVFG
                     DRRILDEGARIAGTAVDVRVVDDETAASTGGDGPVLVDLCNLAPAEVERGTATLAGGR
                     FA"
     gene            complement(388..1287)
                     /locus_tag="VE686_04180"
     CDS             complement(388..1287)
                     /locus_tag="VE686_04180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006610842.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0008643 - carbohydrate transport [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="carbohydrate ABC transporter permease"
                     /protein_id="HYY83682.1"
                     /translation="MTSARVLAAENSAAAPAQSLDWDSRARRMVFIYLPLACFVLILL
                     FPFYWMTITAFKPNAELYNYKQYSPFWISSPTLDNIRRLLFQTAYPTWLMTTMGVAVG
                     ATVLSLFASVLAAYAIQRLRFKGSEYVGLAIYLGYLVPPSILFIPLSTMVFKLGLFDT
                     PLALILIYPTFLVPFCTWLLIGYFKSIPYEMEECALIDGATRLQILRRITLPLAIPGL
                     ISAGIFSFTLSWNEFIYALAFIQSSEKKTVPVAILTELVSGDVYQWGALMAGSLLGSL
                     PVAIFYSFFVDYYVSSLSGAVKE"
     gene            complement(1280..2269)
                     /locus_tag="VE686_04185"
     CDS             complement(1280..2269)
                     /locus_tag="VE686_04185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019197952.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter permease"
                     /protein_id="HYY83683.1"
                     /translation="MASPAHTLRQTAVAPAAPAWSAKTPQPTWLVALFDWKPFLVFVC
                     LLPAVGLLLAFLAYPLGLGIWLAFTDTTVGRDGQFVGLENFEYLFGDKLFWQAVFYSV
                     FYTGVATVGKFGLGLWLALLLNNHLPFKSILRAVILLPWIVPTVLSAIAFWWIYDPQF
                     SIISYVFVDVLGWRTTYFDFLGSAWPARWSLIAANIWRGIPFVAISLLAGLQTISASL
                     YEAALIDGASGWQRFRYITFPLLLPILAIVMTFSIIFTFTDFQLVYAITRGGPVNSTH
                     LLATLAFQRGIPGGMLGEGAAIAISMVPFLVFATLFSYFALARRKWQQGEAND"
     gene            complement(2276..3607)
                     /locus_tag="VE686_04190"
     CDS             complement(2276..3607)
                     /locus_tag="VE686_04190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007614162.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="extracellular solute-binding protein"
                     /protein_id="HYY83684.1"
                     /translation="MAFIITRRESLRLTAAGIAAAALPRGASAQVPRADVAAPNLPIE
                     KGATLRILRPARFVEPDEVIFRANTAKFQQTTGVETRVDFVGWEDIRQQTAVASNTGS
                     GPDVVIGWADDPHVYVDKVAELSDLAEYLGKRYGGWTFLGEKYGKRDKTNNWIGIPFG
                     GTTGPIVYRKSAVKEAGFDKIPNEHPEFLKLCQALKKANKPPGFALGNAVGDGNGFAQ
                     WLIWSHGGALLDEAGKVAINSKETVAALTYLKDLYPTFISGTLSWGDPSNNRAYAAGD
                     VWLTANGVSLYFALKNDPAQRAIAEDTDHQALPFGVASSAPQTATMLNAMLFKHSKFP
                     NAAKSYIQFMMESEQYDPWLTGCLGYWSHTLRAYGKSAVWDSDPKLEVYRNGTDNKFW
                     SGYKGPITQASQTVAAEYVLVQMCASVASGEATPQEAAREAERRSRRYFRG"
BASE COUNT          683 a         1173 c         1319 g          585 t
ORIGIN      
        1 tggcgaagcg tcccccggcg agggtcgccg tgccgcgctc gacctccgcc ggcgcgaggt
       61 tgcacaggtc gacgaggacg gggccgtccc ctcctgtaga ggccgcggtc tcgtcgtcga
      121 cgacgcggac gtccacggcg gtgccggcga tccgggcgcc ctcgtcgagg atgcgccggt
      181 ccccgaacac gacgagcctt gcggcggagc ggacctcggg aagcgccagc accttcgcgg
      241 caagctcggg gctgatcccg gccggatcgc ccatcgcgaa ggctatcgtg ggtctcgtcg
      301 tcggcgtggc catggttctc gctcccatgg ccctcggtaa catccgtccc caagatcatc
      361 aacgccggcg agaggcgttg agaacgccta ctccttcacg gcgccggaga gggacgagac
      421 gtagtagtcg acgaagaacg agtagaagat cgcgaccggc agcgatccga gcagcgagcc
      481 cgccatgaga gcgccccact ggtagacgtc gcccgagacg agctcggtca ggatcgcgac
      541 cgggacggtc ttcttctcgc tgctctggat gaaggcgagc gcgtagatga actcgttcca
      601 ggacagcgtg aaggagaaga tgccggcgct gatgaggccc gggatcgcca gcggcagggt
      661 gatgcggcgc aggatctgca ggcgcgtcgc cccatcgatg agcgcgcatt cctccatctc
      721 gtagggaatg gatttgaagt agccgatcag cagccacgtg cagaacggca ccaggaacgt
      781 cgggtagatg agaatgagag caagcggcgt gtcgaacagg ccgagcttga acaccatggt
      841 cgagagcggg atgaacagga tcgacggcgg gacgagatag ccgaggtaga tggcgagccc
      901 gacgtactcg cttcccttga agcgcaggcg ctggatggcg taggccgcaa ggacgctggc
      961 gaagagggac agcaccgtcg cgccgaccgc cacccccatg gtcgtcatca gccacgtcgg
     1021 ataggcggtt tggaagagca gacggcgaat gttgtcgagg gtcggagagg agatccagaa
     1081 cgggctgtat tgcttgtagt tgtacagctc ggcgttcggt ttgaacgccg tgatggtcat
     1141 ccagtagaac gggaacaaca ggatcagcac gaagcaggcg agcggcaggt agatgaacac
     1201 catccgccgc gcgcggctgt cccagtcgag gctctgagcc ggcgccgcgg cggaattctc
     1261 ggcggcaagc acgcgcgcgc tagtcattgg cttcaccctg ctgccacttg cgccgggcca
     1321 gcgcgaagta gctgaacagc gtcgcgaaga cgaggaacgg caccatcgag atcgcgatcg
     1381 ccgccccttc cccgagcatg ccgcccggga tgccgcgctg gaacgccagc gtcgcgagaa
     1441 ggtgcgtcga gttcaccggc ccgccgcgcg tgatggcgta gacgagctgg aagtcggtga
     1501 aggtgaagat gatcgagaac gtcatgacga tcgcgaggat cggcaggagc agcgggaagg
     1561 tgatgtagcg gaagcgctgc catcccgaag cgccgtcgat gagcgccgcc tcgtagagac
     1621 tcgccgagat tgtctgcagc ccggcaagca gcgagatcgc cacgaagggg atgccgcgcc
     1681 agatgttggc ggcgatgagc gaccagcgtg caggccacgc ggagccgagg aaatcgaagt
     1741 aggtggtgcg ccagcccagc acgtccacga acacgtagga gatgatcgag aactgcgggt
     1801 cgtagatcca ccagaatgcg atggccgaca gaaccgtcgg aacgatccag ggcagcagga
     1861 tgacggcgcg caggatgctc ttgaacggca ggtggttgtt gaggagcagc gcgagccaca
     1921 gccccaggcc gaacttcccg accgtcgcga cgccggtgta gaagacgctg tagaagacgg
     1981 cctgccagaa cagcttgtcg ccgaagaggt actcgaagtt ctcgaggccc acgaactgcc
     2041 cgtcgcgacc gaccgtggtg tcggtgaacg cgagccagat cccgagcccg agagggtacg
     2101 ccaggaacgc gagcagcagc cccaccgccg gcagcaggca cacgaagacg agaaacggct
     2161 tccagtcgaa caaggcaacg agccaggtcg gctggggtgt cttcgcggac cacgccggcg
     2221 cggccggcgc gacggcggtc tgccgcaacg tgtgggccgg ggacgccatg agtggctatc
     2281 cgcggaagta gcggcgcgac cggcgctcgg cctcccgggc ggcctcctgg ggcgtcgcct
     2341 cgccggacgc gacggaggcg cacatctgca cgagaacgta ctcggccgcg acggtctgcg
     2401 acgcctgcgt gatcggcccc ttgtacccgc tccagaactt gttgtcggtg ccgttgcggt
     2461 agacctcgag cttcgggtcg gaatcccaca ccgcgctctt cccgtaagcg cgcagggtgt
     2521 gcgaccagta gccgaggcac cccgtcagcc acgggtcgta ctgctccgac tccatcatga
     2581 actggatgta ggacttggcg gcgttcggga acttgctgtg cttgaacagc atggcgttga
     2641 gcatggtcgc cgtctggggc gccgagctgg cgaccccgaa cggcagggcc tggtggtccg
     2701 tgtcctcggc gatggcgcgc tgggccggat cgttcttgag cgcgaaatag agcgagacgc
     2761 cgttggcggt cagccacacg tcgccggccg cgtaggcgcg gttgttgctc ggatcgcccc
     2821 agctcagggt gccgctgatg aaggtcggat agaggtcctt caggtaggtc agcgccgcga
     2881 ccgtctcctt gctgttgatc gcgaccttgc cggcttcgtc gaggagggcg ccgccgtgcg
     2941 accagatgag ccactgcgcg aagccgttgc cgtcgccgac cgcgttgccg agagcgaagc
     3001 ccggcggctt gttggccttc ttcagggctt ggcacagctt caggaactcg gggtgctcgt
     3061 tcgggatctt gtcgaacccg gcctccttca cggccgactt gcgatagacg atggggcccg
     3121 tggtgccgcc gaacgggatg ccgatccagt tgttggtctt gtcccgcttg ccgtacttct
     3181 cgccaaggaa cgtccatccg ccgtagcgct tgccgaggta ctcggcgagg tccgacagtt
     3241 cggcgacctt gtcgacgtag acgtgcggat cgtcggccca gccgatgacg acgtcgggac
     3301 cagacccggt gttggatgcg accgccgtct gctggcgaat gtcttcccag ccgacgaagt
     3361 cgacgcgcgt ctcgacgccc gtcgtctgct ggaacttcgc cgtgttggcg cggaagatga
     3421 cctcgtccgg ctcgacgaac cgcgccggcc gcaggatgcg caaggtggcg cccttctcga
     3481 tcggcaggtt cggcgcggca acgtcggctc tcggaacctg agcgctcgcg ccgcggggca
     3541 acgcggccgc cgcgatgccc gccgccgtga ggcgcagcga ctcgcggcgc gtgatgatga
     3601 acgccatgac gacttcctcc ccagagaaat agtgcccttg tagacgggcc tttcctctag
     3661 gttagaccgc tattgcggcc cctaacaagg ggctcttgtc gcccctcgac cggcagaggg
     3721 cgtgcggtca ggtcagctgg acttcctcga cacgcagctc
//
LOCUS       DASQWN010000225         8187 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1428662, whole genome shotgun sequence.
ACCESSION   DASQWN010000225 DASQWN010000000
VERSION     DASQWN010000225.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 8187)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8187)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8187
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1428662"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..635)
                     /gene="trpS"
                     /locus_tag="VE686_04195"
     CDS             complement(<1..635)
                     /gene="trpS"
                     /locus_tag="VE686_04195"
                     /EC_number="6.1.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012322223.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004830 - tryptophan-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006436 - tryptophanyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan--tRNA ligase"
                     /protein_id="HYY83685.1"
                     /translation="MSRFQERVFSGVQPTGNLHLGNYLGAIKRFVALQQSYECIYCVV
                     DMHAITVWQDPRELAGQIREVTAAFLAAGVDPAKHIVFNQSQVAEHAELAWVFNCVAR
                     LGWLNRMTQFKDKAGKDRENASVGLYAYPVLMAADILAYRATHVPVGEDQKQHLELTR
                     DIAQKFNNDFGASIAERGFGDGFFPLTEPLIGGPATRVMSLRDGTKKMSKS"
     gene            complement(710..2254)
                     /gene="murJ"
                     /locus_tag="VE686_04200"
     CDS             complement(710..2254)
                     /gene="murJ"
                     /locus_tag="VE686_04200"
                     /inference="COORDINATES: protein motif:HMM:TIGR01695.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0034204 - lipid translocation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="murein biosynthesis integral membrane protein
                     MurJ"
                     /protein_id="HYY83686.1"
                     /translation="MSLMRSTLIVAAASSLSRVLGFVRDVLLANALGAGPVADAFLAA
                     FRVPNAVRRILSEGALNAGFVPIYNRLRSERGSDAAGHFAGQAFSAAALALLAVTAVV
                     ELGAGLVVLLVAAGTAENPAVHELAAFFVRASFPFVATASLASLVSALLNAEGRITVS
                     SLAPVLVNVVVVATLVALRLIPETSPERQAAAIAVATTVGGTLHLAWVVLAARRLGNF
                     RFSAPRLSPELKRLFAAGVPAIAASGAAQLIILAGSQVASFVPAALSWVYYAERLFQL
                     PLGFVGAAVGIVLLPEVAARHATGERSSVVDAQNRALEAGLLLACPAAVALAMLSRPM
                     IAVLFERGAFGPEDTAGTAAVLAGVAAGLPFAVVGKILTQTFFGGHDVRTPLLAGVVG
                     VVVALAATALLAQALGALGIGLGIASGFAAHAASLVIALRSMRLWSIDRPLAGRVGGS
                     TAAATAMGLGLAGTGLMLDPALSKSIETVRLLALCIGGFALYALVAWAVGAIGRRDLG
                     LFAKKA"
     gene            complement(2290..2865)
                     /locus_tag="VE686_04205"
     CDS             complement(2290..2865)
                     /locus_tag="VE686_04205"
                     /inference="COORDINATES: protein motif:HMM:NF024853.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin domain-containing protein"
                     /protein_id="HYY83687.1"
                     /translation="MTRGAQASEPEGQAIPIELFDEARALGAAVPVGSARGDVTLIEF
                     FDYNCPYCRRSAQDIPALLAGDPDLDYLLVNFAVLGPASVQATRVALGYAHLYGPRGY
                     LAFHLALFGVRGGKDGPAALDVAEGLGGERKRLAAAGDSARTTERMKEALRVGSSLGL
                     SATPAFVIGPAAYVGALGLERKRALVAQARA"
     gene            complement(2931..3752)
                     /gene="fabI"
                     /locus_tag="VE686_04210"
     CDS             complement(2931..3752)
                     /gene="fabI"
                     /locus_tag="VE686_04210"
                     /EC_number="1.3.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009490585.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-ACP reductase FabI"
                     /protein_id="HYY83688.1"
                     /translation="MTALMRGRRGLIMGVANDHSIAWGIAKVLAEHGAELAFTYQGEA
                     LGKRVGPLAKSLGSDLVVPCDVESLESLDGAFAALDGKWDRLDFVVHAIAFSEKNELK
                     GLYADTSRENFGRTMLISCFSFTEVAKRAAARMRDGGSMLTLTFGGSTRVMPNYNVMG
                     VAKAALEASVRYLASDYGPRGIRVNAISAGPVRTLAGAGIADARQMFAYQKAHAPLGR
                     TVSTEEIGGSALYLLSHLSGGVTGEIHHVDSGYIIISMPRPEVLKAQDAASVTGE"
     gene            complement(3918..5141)
                     /gene="fabB"
                     /locus_tag="VE686_04215"
     CDS             complement(3918..5141)
                     /gene="fabB"
                     /locus_tag="VE686_04215"
                     /EC_number="2.3.1.41"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009796638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004315 - 3-oxoacyl-[acyl-carrier-protein]
                     synthase activity [Evidence IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl-ACP synthase I"
                     /protein_id="HYY83689.1"
                     /translation="MRRVVVTGMGIVSSIGNNTQEVLASLREAKSGVSRAEDYARLGF
                     RCQVHGAPTLRAEEVVDRRAMRFHGGGTAWNHVAMDQAIADAGLDEREISNDRTGIIM
                     GSGGPSTRTVVESADIARSKGPKRVGPFAVPKAMSSTASATLATWFKIKGVNYSISSA
                     CATSNHCIGNAFEIIQGGRQDIIFAGGSEELDWTLSVLFDAMGAMSTKYNETPTKASR
                     AYDVNRDGFVIAGGAGVVVLEELEHAKARGARIYGELVGYGATSDGYDMVAPSGEGAV
                     RCMQMALSTVKGPIDYINPHATSTPVGDDKEIEAIRAVFGAGDKCPPISATKSLTGHS
                     LGATGVQEAIYSLLMMNNGFICESANIEELDPAFSDMPIVRARKDDAKIGHVLSNSFG
                     FGGTNATLVFKRLDA"
     gene            complement(5221..5745)
                     /gene="fabA"
                     /locus_tag="VE686_04220"
     CDS             complement(5221..5745)
                     /gene="fabA"
                     /locus_tag="VE686_04220"
                     /EC_number="4.2.1.59"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019402451.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0019171 -
                     (3R)-hydroxyacyl-[acyl-carrier-protein] dehydratase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-hydroxyacyl-[acyl-carrier-protein] dehydratase
                     FabA"
                     /protein_id="HYY83690.1"
                     /translation="MARQSSYTYEELLACGRGELFGPGNAQLPLPPMLMFDRVTSIAE
                     DGGANGKGHVRAELDLRPDLWFFPCHFKGDPVMPGCLGVDALWQMVGFFLGWLGSPGR
                     GRALGVGEVKFADQVLPSMKQVVYGVDFKRVFRGKLVLGIADGFLEADGRRIYEAKDL
                     RVGLFKAEEPSSSG"
     gene            5951..6421
                     /locus_tag="VE686_04225"
     CDS             5951..6421
                     /locus_tag="VE686_04225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003604007.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Fur family transcriptional regulator"
                     /protein_id="HYY83691.1"
                     /translation="MTDVLIQARAAFGAAPSPRRGCPFSDLRDKLRRVGLRPTRQRVS
                     LGWLLFAKGDRHVTAEVLYDEARRARVPVSLATVYNTLHQFTEAGLLRQLAVDGSKAY
                     FDTNPTEHHHFFLEDEGELVDVPAQGVTVGALPEAPEGMEVAGVEVIIRLRRKA"
     gene            complement(6428..6973)
                     /locus_tag="VE686_04230"
     CDS             complement(6428..6973)
                     /locus_tag="VE686_04230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012752072.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SH3 domain-containing protein"
                     /protein_id="HYY83692.1"
                     /translation="MRKSYAPMAAIIAAALALSGTAALAAPQEGKKGTGLPVPRFVSL
                     KTDRVNLREGPSKDHRTAWVFQRAGLPVEIVAEYETWRRIRDAEGTEGWVLHSLLSGR
                     RTALVMPRAKGDPEPVPLYERADERGDVVARLQPNVIASVKQCTGSWCRIVVVPGSGR
                     DLDGFIRQDRVWGVYPGERVE"
     gene            7126..8127
                     /locus_tag="VE686_04235"
     CDS             7126..8127
                     /locus_tag="VE686_04235"
                     /EC_number="1.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018406282.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008465 - glycerate dehydrogenase activity
                     [Evidence IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="D-glycerate dehydrogenase"
                     /protein_id="HYY83693.1"
                     /translation="MPAKKRPVVVVTRRLPDAVETRMRELFETRLNLDDKPLSQGELM
                     EAVKAADVLVPTVTDEIDASVLAQAGPNLKLIANFGNGVDNIDVQAALSRGITVTNTP
                     AVLTDDTADMTMALLLAVARRVAEGAAVIPGDAWTGGWSPTWMLGHRITGKRLGIVGM
                     GRIGQALAKRANAFGLSIHYHNRRRVPVRTEEELQATYWESLDQMLARMDIVSVNCPH
                     TPATYHLLSARRLKLMRPDAIIVNTARGEIIDENSLARLIEAGELGGAGLDVFEHEPA
                     VNPRLVKLARAGKVVLLPHMGSATHEGRLDMGEKVIVNIKTFMDGHRPPDRVLPSML"
BASE COUNT         1371 a         2796 c         2793 g         1227 t
ORIGIN      
        1 tccgatttcg acattttctt ggtaccgtcg cgcagggaca tgacacgcgt cgccggcccg
       61 ccgatcagcg gctctgtgag cgggaagaat ccgtccccga agccgcgctc ggcaatcgag
      121 gccccgaaat cgttgttgaa cttctgcgcg atgtcgcggg taagctccag gtgctgcttc
      181 tggtcctctc cgaccggcac gtgcgtcgcg cgataggcca ggatgtcggc ggccatcagg
      241 acgggatagg cgtacaatcc gacggaggcg ttctctcgat ccttgccggc tttatccttg
      301 aactgggtca tgcggttgag ccagccgagc cgggcgacgc agttgaacac ccacgcgagc
      361 tcggcgtgct ctgccacctg actctggttg aagacgatgt gcttcgccgg gtctacgcca
      421 gcggcgagga aggccgcggt gacttcgcga atctgcccgg cgagctcacg agggtcctgc
      481 cacaccgtga tcgcgtgcat gtcgacgacg cagtagatgc actcgtagct ctgctgcagc
      541 gcaacgaagc gcttgatggc gccgaggtag ttgccgagat gcaggtttcc ggtcggctgc
      601 acgccggaga acacccgctc ctgaaaacgc gacatccctc tacagctccc aaccacttcg
      661 ctactcgcgc ggccttatgc gaggccaggc cccggcgagg caagcggctt caggcctttt
      721 tcgcgaacag gcccaggtct cgccggccga tggcgcctac ggcccaggcg accagcgcgt
      781 agagcgcgaa tccgcctatg cagagcgcca gcaggcgcac cgtttcgatg cttttcgaca
      841 aggcagggtc gagcatcagg cctgtgccgg ccagaccgag ccccatcgcc gttgctgccg
      901 cggtgctccc tccgacgcgg cctgcaaggg ggcggtcgat ggaccagagc cgcattgatc
      961 gcagcgcaat gacgagcgag gccgcgtgtg cggcaaagcc ggatgcaatc ccgagcccga
     1021 tccccagagc cccgagcgcc tgcgccagca atgccgtagc ggcgagcgcg accacaaccc
     1081 ctacgacccc ggcgagaagc ggcgtacgga catcgtgacc gccgaagaag gtttgcgtga
     1141 ggatcttacc gacgacggcg aaggggagcc cggcggcgac gcccgcgagc acggcggcag
     1201 tcccggccgt gtcctccggc ccgaacgcgc cgcgctcgaa caggacggcg atcatgggtc
     1261 gcgacagcat cgcgagagcc acggcggccg gacatgcgag aagcaagccg gcctcaaggg
     1321 cccggttctg cgcgtcgacg acgctgctgc gttcgccagt cgcgtgccgg gccgccactt
     1381 cgggcaggag cacgatgccg acagcggccc cgacgaatcc gagcggaagt tggaagaggc
     1441 gctcggcata atagacccac gacagggcgg ccggcacgaa cgaggcgact tggctcccag
     1501 caaggatgat gagctgtgcg gcgccgctgg cggcgatcgc aggcacaccg gccgcaaaga
     1561 ggcgcttcaa ctcgggcgag agccgcgggg cggagaagcg gaagttgccc agtcggcgag
     1621 ccgcgagcac gacccaggcg agatgcaagg tcccgccgac ggtcgtcgcg acggcgatgg
     1681 ccgcagcctg ccgctcgggc gaggtctcgg gaatgagacg cagcgcgacc agcgtggcca
     1741 cgaccacgac gttcaccagc accggtgcga gggaggagac agtgatccga ccttccgcgt
     1801 tgagcagggc cgagactagg gaagccaggg acgcggtcgc gacaaatgga aacgaggcac
     1861 gcacgaagaa agccgcaagc tcgtgtaccg cagggttttc agccgttccc gcggcgacga
     1921 gcaggacgac aagcccggcc ccgagctcca cgacagccgt cacggcgagg agcgcgaggg
     1981 ccgcggccga gaatgcctgc ccggcgaaat gtcccgccgc gtcagagccc cgttccgatc
     2041 ggaggcgatt gtagatcggg acgaaccccg cgttgagggc gccctcgctg aggatgcggc
     2101 gcacggcgtt gggcacccgg aacgcagcca agaaggcgtc cgcaaccggg ccagctccga
     2161 gggcgttcgc cagcagcaca tcacgtacga acccgagcac gcgagacagg gagctcgcgg
     2221 ccgctacgat cagcgtcgac cgcatcaggg acatgggagg acttaccagg tgcgcggacg
     2281 agcgggtgct caggctcggg cctgagcgac aagtgcccgt ttgcgctcga ggccgagagc
     2341 cccgacgtag gcagcggggc ctatgacgaa tgcaggcgtg gcgctgagcc caagcgatga
     2401 gccgacccgt agcgcctcct tcatgcgctc cgtggtcctc gccgagtcgc cggcggcggc
     2461 aaggcgcttg cgctcgcctc cgaggccctc ggcgacatcg agcgctgcgg ggccatcttt
     2521 gcccccgcgg acgccgaaca gagcgaggtg gaaggcaagg tagcccctcg gcccgtacag
     2581 atgggcgtac cccagcgcga cgcgcgtcgc ctggaccgac gccgggccga gtacggcaaa
     2641 gttcaccagc aggtagtcga gatctgggtc gcccgccaga agcgcgggaa tgtcctgagc
     2701 ggatctccgg cagtacgggc agttatagtc gaagaactcg atcagcgtga cgtccccacg
     2761 ggcactgccc accggcacgg cggcgccgag cgcgcgcgcc tcatcgaaga gctcgatggg
     2821 gatggcttgc ccctccggct cgctggcctg cgcgcctctc gtcatcgcga gactcgcgat
     2881 cgcaagtgag agggaacggc ggttcagggc gacgaccatt ccgcggccgt ctactcgccg
     2941 gtgacgctgg ccgcgtcttg ggccttgagc acttcggggc gcggcatcga gatgatgatg
     3001 tagcccgaat cgacgtggtg gatctcgccc gtgacaccgc ccgagaggtg cgacagcagg
     3061 tacagggccg agccgccgat ctcttcggtc gacaccgtcc gccccagcgg ggcgtgggcc
     3121 ttctggtagg cgaacatctg gcgcgcgtcc gcgatgccgg cgccggcgag cgtgcggacc
     3181 ggtccggccg agatggcatt cacccggatg ccgcggggcc cgtagtcgct cgccagatag
     3241 cggacgctcg cctcgagcgc cgccttggcg acgcccatga cgttgtagtt cggcatcacg
     3301 cgcgtcgagc cgccgaaagt cagcgtgagc atggacccgc cgtcgcgcat gcgcgccgcc
     3361 gctcgtttcg cgacttccgt gaacgagaag caggagatga gcatggtgcg gccgaagttc
     3421 tcgcgcgagg tgtcggcgta gagtcccttc agctcgttct tctcggagaa cgcaatggca
     3481 tggacgacga aatcgagacg gtcccacttg ccgtcgagtg ccgcgaaggc gccgtcgagg
     3541 gactcgaggc tctccacgtc gcaggggacg acgagatcgg atccgagcga cttggcgagg
     3601 ggcccgaccc gcttgccaag cgcctcgccc tggtaggtga acgcgagctc ggcgccgtgc
     3661 tccgcaagga ccttggcgat cccccaggca atcgaatgat cgtttgccac ccccatgatg
     3721 aggccacgac ggccccgcat caaagccgtc accggcatct cctcgttgtc cggagcgttg
     3781 ctcgatcgcc gcgggtgccc gttatgaatc cagccgccgc ggccgaaaag gccggcgtcc
     3841 cgacgcatgt ccatgaatga ttttccttcg aaacgaagaa aaaaatgtca cggacaaatt
     3901 tcaactctgt taccacctca agcatcaagc cgcttaaata ccaacgtggc gttggtgccg
     3961 ccgaagccga acgagttcga gaggacatgc ccgatcttcg cgtcgtcctt gcgggctcgc
     4021 acgatcggca tgtccgagaa cgccggatcg agctcttcga tgttggcgct ttcgcagatg
     4081 aagccgttgt tcatcatcag gagcgagtag atcgcttcct gcacgccggt ggcgccgagg
     4141 gagtggccgg tgagcgactt cgtcgcggag atcggcgggc acttgtcgcc cgcgccgaac
     4201 accgcgcgga tggcctcgat ctccttgtcg tcgccgacgg gcgtcgaggt ggcgtgcggg
     4261 ttgatgtagt cgatcggccc cttcacggtc gacagcgcca tctgcatgca gcgcaccgcg
     4321 ccttcgcccg acggagcgac catatcgtag ccgtccgacg tggcgccgta cccgacgagc
     4381 tcgccgtaga tgcgggcacc gcgtgccttg gcgtgctcga gttcctcgag caccacgacg
     4441 ccggcgccgc ccgcgatgac gaacccgtcg cggttcacgt cgtaggcccg cgaggccttc
     4501 gtcggcgtct cgttgtactt cgtcgacatg gcgcccatgg cgtcgaacag caccgagagc
     4561 gtccagtcga gctcctcgct gccgccggcg aagatgatgt cctggcggcc gccctggatg
     4621 atctcaaagg cgttgccgat gcagtggttg gaggtcgcgc aggcggacga gatcgagtag
     4681 ttcacgccct tgatcttgaa ccaggtcgcg agcgttgcgg acgcggtcga cgacatcgct
     4741 tttggcaccg cgaagggccc gacgcgcttc gggcccttcg atcgggcgat gtcggcggat
     4801 tccaccacgg tgcgcgtgga gggaccgccg gaccccatga tgatcccggt gcggtcgttc
     4861 gagatctccc gttcatcgag gccggcgtcg gcgatggcct ggtccatggc cacatggttc
     4921 caggccgtgc cgccgccgtg gaagcgcatg gcgcggcggt cgaccacttc ctcggcgcgc
     4981 agggtcggcg ccccgtggac ctggcaacgg aagccgaggc gggcgtagtc ctcggcccgg
     5041 ctcacgcccg acttcgcctc gcgcaacgac gctaggactt cctgcgtgtt gttgccgatg
     5101 gacgagacga tgcccatccc ggtgacgacg acgcgcctca tggaaaatac gctcctcggc
     5161 gaagaccgaa gtcgctcagg taaaccggct cgcctcggtt ctcaacctcg ggagccgatc
     5221 ttagccgctg gacgagggct cttcggcctt gaagagcccg acgcgcaggt cctttgcctc
     5281 gtagatgcgc cgcccgtccg cctccaggaa accgtcggcg atgccgagca cgagcttccc
     5341 gcggaagacc cgcttgaagt cgaccccgta cacgacctgc ttcatgctcg gcagcacctg
     5401 gtcggcgaac ttgacctcgc cgacgccgag cgcccgaccc cggccgggcg acccgagcca
     5461 gccgaggaag aagccgacca tctgccatag ggcgtcgacg ccgaggcagc ccggcatcac
     5521 cgggtcgcct ttgaagtggc acgggaagaa ccagaggtcc gggcgcaggt cgagttccgc
     5581 ccggacgtgc cccttgccgt tcgcgccccc gtcctccgcg atcgaggtga cgcggtcgaa
     5641 catcagcatg ggtggcaggg gaagctgcgc gttgccgggg ccgaagagct ctccgcggcc
     5701 gcaggccagg agttcctcgt acgtgtagct cgactgccgt gccatcgcgg ttgaatgctg
     5761 tcctcaaagc cagcggggca ggccgccggc gacgcgggtc tcgtaccaca agggttgccg
     5821 tcatcaaagg cagagtggcg ggccacgcga gcctgtgcgg gctgcgcggc gaggcgtcag
     5881 gttgcgggaa gcgcaccgcc tccttagagt agggcagcct cgagcttccg aagcgatccg
     5941 caaagaaccc atgaccgatg tgctgattca ggcccgtgcc gcgttcggcg ccgctccgag
     6001 cccgcggcgc ggctgcccgt tctccgacct gcgcgacaag ctccggcgcg tgggcctgcg
     6061 cccgacccgt cagcgcgtgt ccctgggctg gctcctgttc gccaagggcg accgccacgt
     6121 tactgccgag gtgctctacg acgaggcccg gcgggcgcgc gtgccggttt cgctcgcgac
     6181 cgtctacaac acgctgcacc agttcaccga agcgggcctc ctgcgccagc tcgccgtcga
     6241 tgggtcgaag gcctatttcg acaccaaccc gaccgagcat caccacttct tcctcgagga
     6301 cgagggcgag ctcgtcgacg tgccggccca gggcgtcacc gtcggcgccc tgcccgaggc
     6361 gccggaaggc atggaggttg ccggcgtcga ggtcatcatc cgcctgcgcc gcaaggcttg
     6421 agaagcgcta ctcgaccctc tcgcccggat agacccccca gaccctgtcc tggcggatga
     6481 agccgtcgag gtcgcgcccg ctcccgggga ccacgacgat gcggcaccac gatccggtgc
     6541 actgcttgac gctggcgatg acgttgggct gcagcctcgc caccacgtcg ccgcgctcgt
     6601 ctgcccgctc gtagagcggc acgggctccg ggtcgccctt ggcccggggc atcacgaggg
     6661 cggtgcgccg gcccgacagg agcgagtgca gaacccaccc ctccgtgcct tccgcgtcgc
     6721 ggatgcggcg ccaggtctcg tactcggcga cgatctcgac cggcagcccg gcgcgctgga
     6781 acacccaggc ggtgcggtgg tccttggaag ggccctcgcg caggttcacg cggtcggtct
     6841 tcaggctgac gaagcgcggc accgggagcc ccgttccctt cttgccctcc tgaggggcgg
     6901 cgagggcagc ggtgccggac agtgcgagtg ccgcagcgat gatcgcagcc atcggggcgt
     6961 agctcttgcg catgcgtcgc ttcccgtccg attgtgtttc gagtgccctc tggtagagag
     7021 gcgggacggg ccgcaggatg cgacggctcg tcgcttttct gtcgcccgct cagggttaac
     7081 gaaaggtgaa attcgggtcg gcggccgcca cgcgagagtc acggaatgcc cgcgaagaag
     7141 agaccggtcg tcgtcgtcac ccgccgcctg ccggacgcgg tcgagacgcg catgcgcgag
     7201 ctcttcgaga cgcgcctcaa cctcgacgac aagccgctgt cgcagggcga gctcatggag
     7261 gccgtcaagg ccgccgacgt gctcgtgccg acggtgacgg acgagatcga cgcctccgtg
     7321 ctggcgcagg ccgggccgaa cctcaagctc atcgccaact tcggcaacgg cgtcgacaac
     7381 atcgacgtgc aggcggcgct gtcgcgcggc atcacggtca ccaacacgcc ggcggtgctc
     7441 accgacgaca ccgccgacat gacgatggcg ctgcttctcg ccgtggcgcg ccgggtcgcc
     7501 gagggcgcgg ccgtgatccc gggcgacgcc tggacgggcg gctggtcgcc gacgtggatg
     7561 ctcggccacc gcatcaccgg gaagcgcctc ggcatcgtcg gcatgggtcg catcggccag
     7621 gcgctggcca agcgcgccaa cgccttcggc ctgtcgatcc actaccacaa ccgccgccgc
     7681 gtcccggtgc gcaccgagga ggagctgcag gcgacgtact gggagagcct cgaccagatg
     7741 ctcgcccgca tggacatcgt ctcggtcaac tgcccgcata cgccggcgac ctaccacctc
     7801 ctttcggcgc ggcgcctcaa gctcatgcgg cccgacgcca tcatcgtgaa caccgcccgg
     7861 ggcgagatca tcgacgagaa ttcgctggcg cggctcatcg aggcgggcga gctcggcggc
     7921 gccgggctcg acgtgttcga gcacgagccg gccgtgaacc cgcgcctcgt gaagctcgcg
     7981 cgggcgggca aggtggtgct tctgccccac atgggctcgg cgacgcacga gggccgccta
     8041 gacatgggcg agaaggtcat cgtcaacatc aagaccttca tggacggcca ccgcccgccg
     8101 gaccgcgtgt tgccgagcat gctctaggag cgcgctcgcc ggccgtcgcc gcaagctgcc
     8161 ggatcacttc ctcggccgcc cgctctc
//
LOCUS       DASQWN010000226         8447 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_118823, whole genome shotgun sequence.
ACCESSION   DASQWN010000226 DASQWN010000000
VERSION     DASQWN010000226.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 8447)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8447)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8447
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_118823"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..564)
                     /locus_tag="VE686_04240"
     CDS             complement(<1..564)
                     /locus_tag="VE686_04240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018387705.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alcohol dehydrogenase catalytic
                     domain-containing protein"
                     /protein_id="HYY83694.1"
                     /translation="MAQVPNTMRAVVAPKGGGPEVLTIVERPVPRPGDGELLIRVRAA
                     GVNRPDILQRLGHYPPPPGAPDILGLEIAGEVAAVGAGVSRFSAGQEAMGLVAGGGYA
                     EYAVVHETNALPVPTGVPMVEAGGIPETYFTVWTNVFERGRLQSGETFLVHGGTSGIG
                     TTAIQLAKAFGATVIATAGSDVKCDACR"
     gene            667..864
                     /locus_tag="VE686_04245"
     CDS             667..864
                     /locus_tag="VE686_04245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018454624.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1192 domain-containing protein"
                     /protein_id="HYY83695.1"
                     /translation="MAFDPLADDKPRPKPTHELGQDLSTLSVHELDERIELLKSEIAR
                     LTEARGRKEASKTAASAFFKG"
     gene            1124..1657
                     /locus_tag="VE686_04250"
     CDS             1124..1657
                     /locus_tag="VE686_04250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018261653.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1465 family protein"
                     /protein_id="HYY83696.1"
                     /translation="MSGPDFMFKDNSAPADFGRRFVASDAFRALFREGMALVEDTAAY
                     LDGPGREESRRVPRQIGLAYASESMRLTTRLMQIASWLLVQRALAEGEISPNQALAER
                     NRVRLGAQETPTPLDDFEALPHTLKDLVALSLRLHARILHLDRLIDENAKAEPPATSL
                     VARQHELLQLAFGKRSA"
     gene            complement(1742..1978)
                     /gene="rpmE"
                     /locus_tag="VE686_04255"
     CDS             complement(1742..1978)
                     /gene="rpmE"
                     /locus_tag="VE686_04255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003610919.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L31"
                     /protein_id="HYY83697.1"
                     /translation="MAKQATDHPDYHFIKVQLTDGTEYETRSTWGKEGDVLHLEIDPS
                     THPAWTGGQQQLLDRGGRVSRFNSRFGNLSFGKK"
     gene            2138..3937
                     /locus_tag="VE686_04260"
     CDS             2138..3937
                     /locus_tag="VE686_04260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020090684.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter transmembrane domain-containing
                     protein"
                     /protein_id="HYY83698.1"
                     /translation="MAAASEVPAPTKAPLRALKPLLPFGLRYPGRIGAALIALAISSA
                     ATLAVPLAVRRVIDRGFTDGSGEFVNAYFGVLIVVVLVLAASSATRYYLVVTLGERIV
                     ADVRAAVFRHLTVLDPSFFDATRTGDLVSRLTADTTQVKSAFGVSVSIALRNFFLVVG
                     ASAMMVVTSPKLSALVLLAIPVIVLPLVFSGRSVQRRSRLAQDRLADASAYAAEAVGA
                     VRTMQAFGAESLTASRFAAAAEEAFDAARVSTKARALLTGVGIFLVSASVVAVLWYGA
                     QDVLSGAMSGGRLSQFVLYAVLAASGLGQLSEVYGELAQAAGASERLGEILQARPAVA
                     APARPRPLPVPALGTVGFEDVRFHYPTRPEQSALEGLSFKVGRGERVAIVGPSGAGKS
                     TILQLLLRFYDPQSGRILVDGVPITEADPAQVRARLALVPQEPTIFAATVADNIRYGR
                     LDASDAEVARAAELASADGFIRALPDGFATEIGERGVTLSGGQRQRIAIARAILKDAP
                     ILLLDEATSALDAESERAVQDALDVLMRGRTTLVIAHRLATVRSADRILVMDAGRIVE
                     EGPHEALLSRGGLYARLARLQFTSEERLPSAAQ"
     gene            complement(4103..5122)
                     /locus_tag="VE686_04265"
     CDS             complement(4103..5122)
                     /locus_tag="VE686_04265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009799020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan -binding protein"
                     /protein_id="HYY83699.1"
                     /translation="MALASARRRSRGPFNYWPGFVDALSTLLLAIVFLLSVFMLGQFF
                     LAREITSRDVVLDRLNRQIAELTDLLALEKSGRRNVEAAVSGLQSTLRSTDDDRRRLQ
                     GMLESGAGAQARATELNAALEAERQATGRAMSQVELLNQQIAAMRRQLAALEEALAAS
                     ESRDQESQARIADLGSRLNVALAQRVQELARYRSDFFGRLRQILGNRQDIRIVGDRFV
                     LQSEVLFAAGQATLRPEAGPELDRIATAILELARQIPPDIPWVLRVDGHTDVRPIASP
                     QFPTNWALSASRAIAVVQYLITKGIPPQRLVAAGFGEFQPLDLGTTDEAYARNRRIEL
                     KLTER"
     gene            complement(5124..6107)
                     /locus_tag="VE686_04270"
     CDS             complement(5124..6107)
                     /locus_tag="VE686_04270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012332884.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor protein MotA"
                     /protein_id="HYY83700.1"
                     /translation="MAAGDDTHPLTPPRIYLVRMGVFLVLAGFLAFILYRPIWSAFQA
                     NPALNALIGFALFVGIVLAVRQVSRLFREVRWVNDLSRGDEERLARDQPVLLAPMAAL
                     LSNRATRATLSVTTMRSLLDSIGARLDESREILRYLTGLLVFLGLLGTFWGLIETVGA
                     VARVISSLRSGPEAGVLFEELKNSLAAPLAGMGISFSSSLFGLAGSLILGFLDLQAGQ
                     AQNRFYTELEDWLAMSSTDAAPSIDVGARTGMLSNDLALALNRLTAAVNDGGGGRAAT
                     QAMANLAEGIQGLVQHMRAEQQMIRDWVEAQAAREKDLKQVLDRLTRERIG"
     gene            complement(6155..6958)
                     /locus_tag="VE686_04275"
     CDS             complement(6155..6958)
                     /locus_tag="VE686_04275"
                     /EC_number="3.1.3.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015933580.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008934 - inositol monophosphate
                     1-phosphatase activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006020 - inositol metabolic process
                     [Evidence IEA];
                     GO_process: GO:0046855 - obsolete inositol phosphate
                     dephosphorylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="inositol monophosphatase family protein"
                     /protein_id="HYY83701.1"
                     /translation="MIRSPLMTVMTDAVMKAARTLKRDFGEVENLQVSRKGPGNFVSA
                     ADRKAEQTLREALERARPGYGLVMEESGIVEGSDKSHRWHIDPLDGTTNFLHGLPQFC
                     ISVGLEREGQVVAGVIYDPIKDEMFIGEKGKGAFLNNRRIRVSARRDLADALVACGVP
                     HIGRGNHPQFLREIAIVMPAVAAVRRLGSAALDLAYVACGRADIYWERSLHTWDLAAG
                     ILLVREAGGYVSDVDGGSDPLAAGSIACGNEILHRELLGLLRQANRPGA"
     gene            complement(7055..8005)
                     /locus_tag="VE686_04280"
     CDS             complement(7055..8005)
                     /locus_tag="VE686_04280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015933581.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SEL1-like repeat protein"
                     /protein_id="HYY83702.1"
                     /translation="MRRCLCLLLALAAAPAAMAQAPAPAATPPVNAPPVNAAPALDIP
                     YGAYQRGLFLTALREATASLARDPNDAAAMTLIGELHNQGLGIRQDPVKAAEWYRLAA
                     ARGDPHALSALGLMAIDGRGMAKDPVQGRAWLEQAAAKGEPSAAYNAGLLLMSTGASQ
                     DLTRAVELLRIAADAELPDAQHALGALYITGRGVSRDAAEAARWFRRGMRNGNLAAEV
                     EYAILLFNGEGVPANEAVAARHFRHAATLGNAIAQNRLARLYAVGRGVPQNLVEAAAW
                     HLLAAQQGLTDAWLDQALRNLSAEDRARAERLATERAGQS"
     gene            complement(8005..>8447)
                     /locus_tag="VE686_04285"
     CDS             complement(8005..>8447)
                     /locus_tag="VE686_04285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015933582.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="thiamine phosphate synthase"
                     /protein_id="HYY83703.1"
                     /translation="PGEVDLAAVAARSGADGVHLAGDLGSVRDLRERLRDGRILGVGT
                     LRSRDDAMTAGEAGADYVMFGEPRPDGTLPSLETVLDRASWWAEIFATPCVAHAPTLE
                     AVHEVAATGAEFVAVSDAVWATPGAEAAAVREAIAALARSGAPA"
BASE COUNT         1165 a         2993 c         3069 g         1220 t
ORIGIN      
        1 ccggcaggcg tcgcatttca cgtccgagcc cgccgtcgcg atcaccgtcg cgccgaacgc
       61 cttggcgagc tggatggcgg tcgtgccgat gcccgaggtg ccgccgtgga cgaggaaggt
      121 ctcgcccgac tgaaggcgcc cacgctcgaa gacgttggtc cagacggtga agtacgtctc
      181 ggggatgccg ccggcctcga ccatgggaac gccggtcggg accggcagcg cgttcgtctc
      241 gtgcaccacg gcgtactcgg cgtagccccc gccggcgacg aggcccatcg cctcctggcc
      301 ggcggagaag cgcgagacgc ccgctcccac ggccgcgacc tcgccggcga tctcgaggcc
      361 gaggatgtcg ggcgcacccg gcggcggcgg ataatggccg aggcgctgca ggatgtcggg
      421 gcggttcacg ccggcggcgc gaacgcggat gaggagctcg ccgtcgccgg gcctcggcac
      481 ggggcgttcg acgatggtca gcacctcggg cccgccgcct ttcggcgcga ccactgcgcg
      541 catcgtgttc ggaacttgag ccatggcgtc ctcctcgcgt gcggctcgcg aatcgcacga
      601 cgcccggccc gttggcaagg cgacggcgcg ggcggtacct tcgagggacg cgccctggag
      661 gaaagcatgg ccttcgaccc cctcgccgac gacaagcccc gcccgaagcc gacccacgag
      721 ctcgggcagg acctgtcgac cctgtcggtg cacgagctcg acgagcgcat cgaactcctc
      781 aagtcggaga tcgcgcgcct cacggaggcg agagggcgca aggaggcctc gaagaccgcc
      841 gccagcgcct tcttcaaggg gtgaagtccc tgcgcggccg cagcttccgg cggcgtgccc
      901 ggtccgccgt aaccttccct taaggcttcc gattctataa cggcggcgtc cagtcttctg
      961 gacgagtggc tcctgtccac tctgtttgac gcctccctgt tatccacttt caaaagccgc
     1021 cctcgggcgg ctcttttttt ggccgcactc gccgttaagg ttaaggacat gtgaacgggg
     1081 cgcggccacg ctgctccggc tacggtcgga cggcatccag gccatgagcg gacccgactt
     1141 catgttcaag gacaattccg ccccggccga cttcggcagg cgcttcgtcg cgtcggatgc
     1201 gttccgcgcg ctgttccgcg agggcatggc gcttgtcgag gacacggcgg cctacctcga
     1261 cggaccggga cgggaggagt cgcgtcgcgt gccgcgccag atcggcctcg cctacgccag
     1321 cgagagcatg cggctgacga cccgcctgat gcagatcgcg tcctggcttc tcgtccagcg
     1381 cgccctcgcc gagggcgaga tcagccccaa ccaggcgctc gccgagcgca accgcgtccg
     1441 cctcggcgcg caggaaacgc cgacgccgct cgacgacttc gaggccctgc cgcacacgtt
     1501 gaaggatctg gtggcgctct cgctgcgcct gcacgcgcgc atcctgcacc tcgaccggct
     1561 catcgacgag aacgccaagg cggagccgcc ggccacgagc ctcgtcgctc gccagcacga
     1621 gcttttgcag ctcgccttcg gcaagcgctc cgcctgacgc tgccgagagc ccacgaaaaa
     1681 agccccgctc gcgcggggct tttcgtttcg tgcgggacgc gccgcgtcgc ggcggcgggc
     1741 cttacttctt gccgaaggac aggttgccaa agcgcgagtt gaagcgcgac acgcgcccac
     1801 cgcggtcgag caactgctgc tgcccgccgg tccaggccgg gtgcgtcgag ggatcgatct
     1861 cgaggtggag cacgtcgccc tccttgcccc aggtcgagcg ggtctcgtac tcggttccgt
     1921 cggtgagctg caccttgatg aagtggtagt cggggtggtc ggtcgcctgc tttgccatgg
     1981 gcctatcctc tcgcggctgc cggtgacggc cgcccgcgcg tgctcgcgcc agtcttcgga
     2041 aatgatcgcg gcgctatagc tcacatgggc cgtgcaaaca agcgtggccg catctgctag
     2101 aagcctcgtc gtcctgagag ccccatcccg accgcccatg gccgccgcgt ccgaagtccc
     2161 cgccccgacg aaagctccct tgcgggcgct gaagccgctg cttcccttcg gcctgcgcta
     2221 cccgggccgc atcggcgcgg cgctcatcgc gctcgccatc tcctccgccg ccacgctggc
     2281 ggtgccgcta gccgtccgcc gcgtcattga ccgcggcttc acggacggca gcggcgagtt
     2341 cgtcaacgcg tacttcggcg tgctcatcgt cgtggtcctc gtgctcgcgg cctccagcgc
     2401 cacgcgctac tatctcgtcg tgacgctcgg cgagcgcatc gtcgccgacg tgcgcgcggc
     2461 ggtgttccgg catctcacgg ttctcgatcc ctcgttcttc gatgcgacga ggacgggcga
     2521 cctcgtctcg cgcctgaccg ccgacacgac gcaggtgaaa tcggccttcg gcgtcagcgt
     2581 ctcgatcgcc ctgcgcaact tcttcctcgt cgtcggcgcc tcggccatga tggtggtgac
     2641 gagcccgaag ctctcggcgc tggtgctgct cgcaattccc gtgatcgtgc tgccgctggt
     2701 gttctcgggg cgcagcgtgc agcgccgctc gcggctcgcc caggaccggc tcgccgacgc
     2761 ctccgcctac gcggcggagg ccgtcggcgc ggtgcgcacc atgcaggcct tcggcgccga
     2821 gagccttacg gcgtcgcgct ttgccgccgc cgccgaggag gccttcgatg ccgcccgcgt
     2881 ctcgaccaag gcccgcgcgc tgctgaccgg cgtcgggata ttcctcgtct cggcgagcgt
     2941 cgtcgccgtg ctctggtacg gcgcccagga cgtgctctcg ggcgccatgt cgggcgggcg
     3001 gctgtcgcag ttcgtcctct atgccgtgct ggcggcgagc ggtctcgggc agctctcgga
     3061 ggtgtacggc gaacttgcgc aggcagcggg cgcgtcggag cggctgggag agatcctcca
     3121 ggctcgtccg gccgtggcgg ccccggcgcg gccgcggccg ctcccggttc cggcgctcgg
     3181 caccgtcggg ttcgaggacg tgcgcttcca ctacccgacg cggcccgagc agtccgcgct
     3241 cgagggctta agtttcaagg tcggccgagg cgagcgggtc gccatcgtgg gcccttcggg
     3301 ggccggcaag agcacgatcc tgcagctgct gctgcgtttc tacgatcccc agtccgggcg
     3361 catcctcgtc gacggcgtcc ccatcaccga ggccgatccg gcgcaggtgc gggcccgcct
     3421 cgccctcgtg ccgcaggagc cgaccatctt cgccgcgacc gtcgcggaca acatccgcta
     3481 cggccgcctc gacgccagcg acgccgaggt ggcgcgcgcg gccgagctcg cgtcggcgga
     3541 cggcttcatc cgcgccctgc cggacggctt cgcgaccgag atcggcgagc gcggcgtcac
     3601 cctctcggga ggccagcgcc agcgcatcgc catcgcccgc gccatcctca aggacgcgcc
     3661 gatcctcctc ctcgatgagg ccacgagcgc cctcgacgcc gagagcgagc gcgccgtcca
     3721 agacgccctc gacgtgctca tgcgtggacg caccaccctc gtcatcgcgc accgccttgc
     3781 gacggtgcgc tcggccgacc gcatcctcgt gatggacgca ggccgcatcg tcgaggaagg
     3841 cccgcacgag gcgctcttgt cccggggcgg cctctacgcc cgcctcgcga ggctccagtt
     3901 cacgagcgag gagcgcctgc cgagcgcggc gcagtagccg ggaccatccc tccccgcgag
     3961 gggagggcgg agacgggcgc gtcagcgccc gcccgggtgg ggcggaacca cggtgcgaaa
     4021 ccagagacat cgggcttccg ccccaccccg ctcgcgcctg caggcgcgag tcgccctccc
     4081 ctcgcgggga gagatgcggc gcctaccgct ccgtgagctt cagctcgatg cggcggttgc
     4141 gggcgtaggc ctcgtcggtg gtgccgaggt cgaggggctg gaactcgccg aagccggccg
     4201 ccacgaggcg ctgcggcggg atgcctttgg tgatgagata ctgcaccacc gcgatggcgc
     4261 gcgatgccga cagggcccag ttggtcggga actgcgggct cgcgatcggg cgcacgtcgg
     4321 tgtggccgtc gacgcgcagg acccagggga tatcgggcgg gatctggcgc gcgagttcca
     4381 ggatggcggt ggcgatgcgg tcgagctcag gcccggcttc cggccgaagc gtcgcctgcc
     4441 ccgccgcgaa cagcacctcg gactggagca cgaagcggtc gccgacgatg cggatgtcct
     4501 gccggttgcc gaggatctgc cgcaggcggc cgaagaagtc ggagcggtag cgcgcgagct
     4561 cctgcacccg ctgcgccagg gcgacgttga gccggctgcc gaggtcggct atgcgcgcct
     4621 ggctctcctg gtcgcggctc tccgaggcgg cgagcgcctc ctcgagggcg gcgagctggc
     4681 ggcgcatggc ggcgatctgc tggttgagaa gctcgacctg cgacatggcg cgacctgtcg
     4741 cctgccgctc ggcctccagc gcagcgttga gctcggtggc gcgcgcctgc gcgccggcgc
     4801 cggactcgag catgccttgc agccgccggc ggtcgtcgtc ggtcgagcgc agcgtcgact
     4861 gcaggcccga gacggcggct tcgacgttgc gccggcccga cttctcgagg gcgagcaggt
     4921 cggtgagctc ggcgatctgc cggttcagtc ggtcgaggac gacgtcgcgg ctcgtgatct
     4981 cgcgggcgag gaagaactgc ccgagcatga acacggacaa gaggaacacg atggcgagca
     5041 ggagcgtgga cagcgcgtcg acgaagcccg gccagtagtt gaacggtccg cgcgagcgcc
     5101 ggcgggcgga ggcgagcgcc atctcagccg atccgctcgc gggtcaggcg gtcgaggacc
     5161 tgcttgaggt ctttctcgcg cgccgcctgc gcctccaccc agtcgcggat catctgctgc
     5221 tcggcgcgca tgtgctgcac gaggccctgg atgccttcgg cgaggttggc catggcctgg
     5281 gtggcggcgc gcccgccgcc gccgtcgttg acggccgcgg tgaggcggtt gagggcgagc
     5341 gcgaggtcgt tcgacagcat gcccgtgcgg gcgccgacat cgatcgaggg cgccgcatcg
     5401 gtgctcgaca tggcgagcca gtcctcgagc tcggtgtaaa agcggttctg ggcctgcccg
     5461 gcctgcaggt cgaggaagcc gaggatgagc gatccggcga gcccgaaaag cgacgacgag
     5521 aacgagatgc ccatgccggc gagcggcgcc gcgagcgagt tcttcaattc ttcgaacagc
     5581 acgcccgcct cgggtccgct gcgcagggac gagatgacgc gggcgaccgc gccgacggtc
     5641 tcgatgaggc cccagaaggt gccgagcagg ccgaggaaga cgagcaggcc cgtgagatag
     5701 cgcaggatct cgcggctctc gtcgaggcgc gccccgatgg agtcgaggag cgagcgcatg
     5761 gtcgtgacgg acagggttgc ccgcgtcgcc cggttggaca ggagcgccgc catgggcgcc
     5821 agcagcaccg gctggtcccg cgcaagacgc tcttcgtcgc cgcggctgag atcgttgacc
     5881 cagcgcacct cgcggaacag gcgcgagacc tggcgcaccg cgagcacgat gccgacgaaa
     5941 agcgcgaagc cgatcagcgc gttgagcgcg gggttggcct ggaaggcgct ccagatcggg
     6001 cgatagagga tgaaggcgag aaacccggcc agcaccagga acacgcccat ccggacgagg
     6061 tagatccggg gcggagtcag agggtgcgtg tcgtcgccgg ccgccatctc gcctcccgag
     6121 agtcgcgcca ctgtggccgc gtcgcctcct gcgatcaagc tccgggccgg ttcgcctggc
     6181 gcaggagacc gaggagttcg cggtgcagga tctcgttgcc gcacgcgatg gagcccgccg
     6241 cgagcgggtc gctgccgccg tcgacgtcgg agacatagcc gccggcctcg cgcacgagca
     6301 ggattccggc cgccaaatcc caggtgtgga gcgagcgttc ccagtagatg tcggcgcggc
     6361 cgcaggccac gtaggcgagg tcgagggcgg cggagccgag gcggcgtacg gccgcgacgg
     6421 ccggcatcac gatcgcgatc tcgcgcagga actggggatg gttgccgcgg ccgatgtgcg
     6481 gcacgccgca ggcgacgagc gcgtcggcga ggtcgcgcct tgccgagacg cggatgcggc
     6541 ggttgttgag gaaggcgccc ttgcccttct cgccgatgaa catctcgtcc ttgatcgggt
     6601 cgtagatgac gccggcgacc acctggccct cgcgctcgag cccgaccgag atgcagaact
     6661 gcggcaggcc gtggaggaag ttcgtggtgc cgtcgagggg gtcgatgtgc cagcggtggc
     6721 tcttgtccga gccttcgacg atgccgctct cctccatcac gaggccgtag ccgggccgcg
     6781 cgcgctcgag cgcttcgcgc agggtctgct cggccttgcg gtcggcggcg gacacgaagt
     6841 tgcccggccc cttgcgcgag acctgcaggt tctcgacctc gccgaagtcg cgcttcaggg
     6901 tgcgcgccgc cttcatcacc gcgtcggtca tgacggtcat caggggagag cggatcatca
     6961 agggaccttt tcgggagcgg gcggagcggg cgcaagggcg ccccggaggg cccgggtgaa
     7021 acaccgggcg cggcgcgggt caaccgcgat cgcgtcagct ctgccccgcg cgctccgtcg
     7081 cgaggcgctc ggcgcgggcg cggtcctcgg ccgagaggtt gcgcaaagcc tggtcgagcc
     7141 aggcgtccgt caggccctgc tgcgccgcga ggaggtgcca ggcggccgcc tcgacgaggt
     7201 tctgcggcac gccgcggccg acggcataga ggcgcgccag gcggttctgc gcgatggcgt
     7261 tgccgagggt cgctgcgtgc cggaagtgac gcgccgccac ggcctcgttc gccgggacgc
     7321 cctcgccgtt gaagaggagg atcgcgtact cgacctcggc cgcgagattg ccgttgcgca
     7381 tgccgcgccg gaaccagcgc gccgcttccg ccgcatcgcg cgagacgccg cggccggtga
     7441 tgtagagggc gccgagcgcg tgctgggcgt ccgggagctc ggcgtcggcg gcgatccgga
     7501 ggagctcgac ggcgcgggtg agatcctggc tcgcgcccgt cgacatgagg agcaggccgg
     7561 cgttgtaggc ggcgctcggc tcgcccttcg cggccgcctg ctcgagccac gcccggccct
     7621 gcaccgggtc cttggccatg ccgcggccgt cgatggccat gagcccgagc gccgacaggg
     7681 catgggggtc gccccgcgcc gcggcgagac ggtaccactc cgccgccttg acgggatcct
     7741 ggcggatgcc gaggccctgg ttgtgcagct cgccgatgag cgtcatggcg gccgcatcgt
     7801 tcggatcgcg ggcgaggctc gccgtggcct cgcgcagggc ggtcaggaac aggccccgct
     7861 gataggcgcc gtagggtatg tcgagggccg gcgccgcatt caccgggggc gcgttaaccg
     7921 ggggcgtcgc ggccggggcc ggcgcttgcg ccatcgccgc gggagcagcc gcgagggcga
     7981 gcaagaggca caaacagcgg cgcatcacgc cggcgccccc gagcgggcga gcgccgcaat
     8041 cgcctcgcga accgccgccg cctccgcgcc gggcgtcgcc caaacggcgt cgctcacggc
     8101 cacgaactcg gcgcccgtgg ccgcaacctc gtgcacggcc tcgagcgtcg gcgcatgcgc
     8161 cacgcacggg gtcgcgaaaa tctccgccca ccacgaggcc cgatcgagga ccgtctcgag
     8221 actgggaagg gtgccgtccg gccgcggctc gccgaacatc acgtagtcgg ccccggcctc
     8281 gccggccgtc atggcgtcgt ccctggagcg caaagtcccg acgccgagga tgcgcccgtc
     8341 gcgcaggcgc tcgcgcaggt cccgaacgct gccgagatcg ccggcgaggt ggacgccgtc
     8401 ggcgccgctc ctggccgcga cggccgcgag gtcgacctcg ccaggcg
//
LOCUS       DASQWN010000227         9301 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1330204, whole genome shotgun sequence.
ACCESSION   DASQWN010000227 DASQWN010000000
VERSION     DASQWN010000227.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 9301)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9301)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9301
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1330204"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1046)
                     /locus_tag="VE686_04290"
     CDS             complement(<1..1046)
                     /locus_tag="VE686_04290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009452737.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding protein"
                     /protein_id="HYY83704.1"
                     /translation="MTAPLARLDTDILILGAGGAGLFAALHAKRAAPDLDVTIAVKGL
                     LGKCGCTRMVQGGYNVALAEGDSVERHFMDTVEGGKWLNNQDLAWTLVTQAQVRIREL
                     ENELGCFFDRNPDGTVHQKAFAGQTFDRTVHKGDLTGIEIINRLAEQVWRRDVRRLED
                     HRAIELIPAADGSGLAGVLMVDMRTGVPLFVRAKATLLATGGGPTMYKYHTPSGDKTC
                     DGLAMALRAGLPLRDMEMVQFHPTGLLAGPGTRMTGTVLEEGLRGAGGYLTDSTGERF
                     MFAYDERGERATRDIVSRSIQDRIRKGFATPNGGVYIEMAHLGPDSVRRAFKGMVERC
                     TDCGFDLAAGRVEVV"
     gene            complement(1043..2065)
                     /locus_tag="VE686_04295"
     CDS             complement(1043..2065)
                     /locus_tag="VE686_04295"
                     /inference="COORDINATES: protein motif:HMM:NF025464.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heparin lyase I family protein"
                     /protein_id="HYY83705.1"
                     /translation="MRTVLAGAVAATLTCTAGPAPAQVIRDDFSARGISAERWLFCER
                     DENEVAVVQPPGVTFRAAEMTVRPRVEVAVFGMMFRHPGCRNGGGAFEPEKNDERSEL
                     WEADAVTLPFGTEVWYRFAFQVDPDTRRSAERLVIGQWKQSNSATGDSPVIAQRFNGR
                     TFSITVEQDNTSPDRAPEDKECRVWIAVDRSAVKVAGGSEAHSLLSVAGTGEPLHRPG
                     GLPSIGHDEFEVSHAAPPATAAAAPRPCVQDLTVMPLGFLPDPFGHWVTMLYHIRLNG
                     PDSLVEVWADGQPVARASGRIGFSTTGPGRQYFKFGPYRKHQPYPAWARLAQYARGFS
                     REDVDR"
     gene            complement(2062..2673)
                     /locus_tag="VE686_04300"
     CDS             complement(2062..2673)
                     /locus_tag="VE686_04300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010685105.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016836 - hydro-lyase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="fumarate hydratase C-terminal domain-containing
                     protein"
                     /protein_id="HYY83706.1"
                     /translation="MAHHVLTMPIDEAQVRELRAGDTVTLERTLFGIRDATQIHMFDR
                     GRTTRFDLKGHAVIHTAPNVRSVPKDEANPVGIAPVCIGTTTSQRMERFTRPLMEREG
                     VRIIIGKGGLGDQSRQAFQDIGGAYLAIVGGAAALETTWIEAIEDVDLDDLNPESLWR
                     FRIRGFGPILVAMDAHGGSLYDKVGETAAANRAAALAALGVGQ"
     gene            complement(2679..3578)
                     /locus_tag="VE686_04305"
     CDS             complement(2679..3578)
                     /locus_tag="VE686_04305"
                     /EC_number="4.2.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020094915.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016829 - lyase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="fumarate hydratase"
                     /protein_id="HYY83707.1"
                     /translation="MTTVLADQFELDYRTIEETAKELYIRALKILPPQVKRGFERLQR
                     DETDGTAKTILGTMVENIAVAERTRNLLCQDTGIPIYNVVVGRDVRLDGVALKEALRR
                     GAERATREHPLRSSVVHPITRINEQTSCGRGIPVINVDFDDSARQIRIEMIPKGSGSE
                     NGSFLQMLIPAQGIDGIKTFVVDKVIELGGRVCPPTIVGVGVGGTSDLCMHLAKVAAT
                     RPLGSACEDPEGEKLEKMLSIAVNSLGIGPQGLGGRGTSFAVHVETAATHITMNPVAV
                     NIQCHSARRASAVISADGIEYGF"
     gene            complement(3582..3956)
                     /locus_tag="VE686_04310"
     CDS             complement(3582..3956)
                     /locus_tag="VE686_04310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010685107.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinate dehydrogenase"
                     /protein_id="HYY83708.1"
                     /translation="MTSTALFDRRSTLRRRAHRGFWAFAIHRISGLALALFLPVHFWA
                     LGHAIEGEARLETFLRWTDNPLTKAAEFGLVFLLAAHLAGGVRLLLLEFVGWRDWHQR
                     AVAATLGFAALVGLFFLLNVGA"
     gene            complement(3953..4321)
                     /locus_tag="VE686_04315"
     CDS             complement(3953..4321)
                     /locus_tag="VE686_04315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012329721.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinate dehydrogenase"
                     /protein_id="HYY83709.1"
                     /translation="MSAVAAVPARARTRLEVRLWLAQRLSAVVLAACIVIHIATIVYA
                     VRGGLSAGEILARTRGNAAWLGFYAVFTAAVAIHASIGLRTIVAETLRWRGRRLDAFA
                     LVFAVLVFAAGLRAAIGLYR"
     gene            complement(4318..5049)
                     /locus_tag="VE686_04320"
     CDS             complement(4318..5049)
                     /locus_tag="VE686_04320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015934273.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinate dehydrogenase/fumarate reductase
                     iron-sulfur subunit"
                     /protein_id="HYY83710.1"
                     /translation="MAPKHQTEALRVKVWRGTQEGGFDAYAVPPSENQTVLDVVTYIQ
                     RELDPSLSYRFACRVGMCGSCAMTVNGRPRWTCRTHVSKVTDGREITIEPLRNLPIIK
                     DLAVDMAAFFDKWERAKGSFTPSADAAADFAVVEPTSPKRRAADEAIECIGCAVCYSA
                     CDVVAWNPDYLGPAALNRAWTLVNDVRDEGQAERLAAVSGDAGCHACHSHQSCKTYCP
                     KALNPTGAIAGLKRLVAMATLRGDL"
     gene            complement(5124..5858)
                     /locus_tag="VE686_04325"
     CDS             complement(5124..5858)
                     /locus_tag="VE686_04325"
                     /inference="COORDINATES: protein motif:HMM:NF014035.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite exporter TauE/SafE family protein"
                     /protein_id="HYY83711.1"
                     /translation="MMASLTLQTLGVVWLGAFLGAVAAGGAGFAFALTASAVWLHALE
                     PVHTTMLVVACGTLLHVTLVWPVRRSIEPARLLPFAIGGLIGIPIGVALLTHVDTRGL
                     KGALGLFLVVYGTYALLAPRLPEIRGGGRAADAAVGFVGGILGGLGGYSGVLPTIWTQ
                     LRGWRKDVARGVFQPFILMAHVVTLVLVGIAAMDTGGALMTLAALPALYAGAWIGWRI
                     YGRLDDRRFRQVLAALLVASGLTLVL"
     gene            complement(5855..6784)
                     /locus_tag="VE686_04330"
     CDS             complement(5855..6784)
                     /locus_tag="VE686_04330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015933156.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AEC family transporter"
                     /protein_id="HYY83712.1"
                     /translation="MLGSILLALVPVAGLIAVGYALRASGFIGEAFWPQAERLAYFFL
                     LPALLFHSLAMADLGAVQIGGLAAVLVAALCATAAVMIASRRLIVEDGPAFTSAFQGG
                     LRFNNYVGLTAAGGLLGANGLALAAVCNAVIVPVANVLCILVFTRYGRTRVPLAGVVK
                     TVATNPLVLSCLLGALFQGIGLKIPLGVEGVFRALGQASLPIGLLCVGAAIEPAAMRF
                     GMRTAAAASVVKFGVMPAVTAAFCVAFGVLGEAGFVAMLFHSLPTASSAYILSRQLGG
                     DAPLMAGIIAFQTLLAAVTMPLTLLAASRWLLP"
     gene            complement(6965..7978)
                     /locus_tag="VE686_04335"
     CDS             complement(6965..7978)
                     /locus_tag="VE686_04335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013421103.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HYY83713.1"
                     /translation="MVMTLTRRALVAGALCVAALAGADAQAQTRTVKLAKQFGISYLP
                     LTIMEQKGFLEEEGKKLGLDLKSEWIQFSAGNAMNEAILSGNLDFASGGVGPLLTIWS
                     RTRANIGVKAVAALNAMPLFLNTINPNVKTIADFTEKDRIALPAVRTSIQAVTLQMAA
                     EKTFGPGQHGKLDAWTVSLGHPDAQAAMMGGQSGITAHFTSAPFMYDELADPRVRKVL
                     DSYDVLGGPHTFNLVWSQGKLAKEEPKLIRAFVAALDRSIAHIKADPADAALTWTKAE
                     KSRMSAAEAEKMIRLPENEWTMTPKKIMAYAEFMARTGVIPSKPDTWKDLFFEDIHTM
                     PGS"
     gene            complement(8069..>9301)
                     /locus_tag="VE686_04340"
     CDS             complement(8069..>9301)
                     /locus_tag="VE686_04340"
                     /inference="COORDINATES: protein motif:HMM:NF014794.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0030976 - thiamine pyrophosphate binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine pyrophosphate-dependent enzyme"
                     /protein_id="HYY83714.1"
                     /translation="MLNAQRPAQHVAKALDIALAYPPGPVMLNVPADQSRAAAPDEPP
                     ARPVRRAGVELGRDHGERLRALIAGAQRPLALVGLGALHGDAPAAARAFLRGWGIPCL
                     TSYKAKGVLDEHDPLCLGAVGLSPTVDDENLRLVAEADCLVLIGFDPIELRDAWLNAW
                     DPAKPCIAIDWGTLGHRMFPAAEEAFGDLPAILASLSREAVAQAGWPAQRLDDHRRAV
                     AHVVRPRDPDGTISPAALFAAVDARIREDWTLTVDVGAHRILANHVLRCRTPGQLLQS
                     NGLGHMGYALPAAIGAQLVRPDHTVVALVGDGCALMSLGDMALAAELDLPLVVVVLND
                     DALSLIKLKQRKMQLEPRAVDFRSPRFDVLAAGFGAVGRRVTTLRDLEAALDDAVAAR
                     RFTIIDALVDPAEYLEQM"
BASE COUNT         1429 a         3132 c         3422 g         1318 t
ORIGIN      
        1 accacctcga cgcgacctgc ggccagatcg aagccgcagt ccgtgcagcg ctcgaccatg
       61 cccttgaagg cgcgccgcac gctatccggc ccgaggtgcg ccatctcgat atacaccccg
      121 ccgttcggtg tcgcgaagcc cttgcggatg cggtcctgga tcgagcggct gacgatgtcc
      181 cgcgtggcgc gctcgccgcg ctcgtcgtag gcgaacatga agcgctcgcc cgtcgagtcg
      241 gtcaggtagc cgccggcgcc gcgcagtccc tcttcgagca ccgtgccggt catgcgcgtg
      301 cctgggcctg ccaaaaggcc cgtcgggtgg aactggacca tctccatgtc gcgcaagggg
      361 agcccggcgc gcaacgccat ggcgaggccg tcgcaggtct tgtcgccgga gggcgtgtgg
      421 tacttgtaca tggtcggccc gccgccggtg gcgagcaggg tcgccttggc gcgcacgaac
      481 agcgggaccc cggtgcgcat gtcgaccatc agcacgcccg cgaggccgga gccgtccgcg
      541 gccgggatca gctcgatcgc gcggtggtcc tcgaggcggc gcacgtcccg gcgccagacc
      601 tgctcggcca ggcgattgat gatctcgatg ccggtgaggt cgcccttatg gaccgtgcgg
      661 tcgaaggtct gccccgcaaa ggccttctgg tggacggtgc cgtccggatt gcggtcgaag
      721 aagcagccga gctcgttctc gagctcgcgg atgcgcacct gcgcctgcgt gacgagcgtc
      781 caggcgaggt cctggttgtt cagccacttg ccgccctcga cggtgtccat gaagtggcgc
      841 tcgacggagt cgccctcggc cagcgcgacg ttgtagccgc cctggaccat gcgggtgcag
      901 ccgcacttac ccaggagccc tttgaccgca atggtgacgt cgagatccgg cgccgccctc
      961 ttggcgtgca acgccgcgaa cagcccggcg ccccccgcgc cgaggatgag aatgtcggtg
     1021 tcgaggcggg caaggggcgc ggtcaccggt cgacgtcctc acggctgaag ccgcgcgcgt
     1081 actgcgcgag gcgcgcccag gccggatagg gctgatgctt ccggtacggc ccgaacttga
     1141 aatactggcg cccggggccc gtggtcgaga aaccgatccg gcccgacgcc cgcgccaccg
     1201 gctgcccgtc ggcccagacc tcgacgaggc tgtcgggccc gttcaggcgg atgtggtaga
     1261 gcatcgtcac ccaatgtccg aatgggtcgg ggaggaagcc gagcggcatc accgtgaggt
     1321 cctggacgca gggccgcggc gcggccgcgg cggtcgccgg gggcgcggca tggctgacct
     1381 cgaactcgtc gtggccgatc gacggcagcc cgcctgggcg atggaggggc tcgcccgtcc
     1441 cggcgacgga caggagcgaa tgcgcctcgg agccccccgc gactttcacg gcgctcctgt
     1501 cgaccgcgat ccagacgcgg cactccttgt cctcaggcgc gcggtccggg ctcgtgttgt
     1561 cctgctcgac ggtgatcgag aaggtgcggc cgttgaagcg ctgggcgatg accgggctgt
     1621 cgcccgttgc gctgttgctc tgcttccact gcccgatcac gagccgctcg gcactcctcc
     1681 gcgtgtcggg gtcgacctgg aatgcgaagc ggtaccagac ctcggtcccg aacggcaggg
     1741 tgacggcatc ggcctcccac agctccgagc gctcgtcgtt cttctcgggc tcgaaggcgc
     1801 cgccgccgtt gcggcatccc ggatgcctga acatcatgcc gaagacagcc acctcgaccc
     1861 gcgggcgcac cgtcatctcg gcggcccgga acgtgacccc gggcggctgc acgaccgcga
     1921 cctcgttctc gtcgcgctcg cagaagagcc agcgctcggc cgagattccg cgcgcggaaa
     1981 aatcgtcccg gatcacctgc gcgggagccg gcccagcggt gcaggtgagc gtcgccgcga
     2041 cggcgccggc gaggactgtc ctcactgacc gacgccgagg gccgcgagcg cggcggcgcg
     2101 gttggcggcg gcggtctcgc cgaccttgtc gtagagcgag ccgccgtggg catccatggc
     2161 gacgaggatc gggccgaagc cgcggatgcg gaagcgccac agcgactcgg ggttgaggtc
     2221 gtcgagatcg acgtcctcga tcgcctcgat ccaggtggtc tcgagcgccg cggcgccgcc
     2281 gacgatggcg aggtaggcgc cgccgatgtc ctggaaggct tgccgcgact gatcgccgag
     2341 gccgcccttg ccgatgatga tgcgcacccc ctcgcgctcc atcagcgggc gggtgaagcg
     2401 ctccatgcgc tgcgacgtgg tggtgccgat gcacaccggc gcgatgccga ccgggttcgc
     2461 ctcgtccttc ggcacgctgc gcacgttcgg cgccgtgtgg atgacggcgt gacccttcag
     2521 gtcgaagcgc gtcgtgcgcc cgcggtcgaa catgtggatc tgcgtcgcgt cgcggatgcc
     2581 gaagagcgtg cgctcgaggg tgacggtatc gccggcgcgc agctcgcgaa cctgcgcttc
     2641 gtcgatgggc atggtgagga cgtggtgcgc catggctctc agaacccgta ctcgatgccg
     2701 tcggcggaga tcaccgccga ggcgcggcgg gccgagtggc attggatgtt cacggcgacg
     2761 gggttcatgg tgatgtgcgt cgcggcggtc tcgacgtgga ccgcgaacga ggtgccgcgt
     2821 ccgcccaagc cctgcggtcc gatgcccagc gagttcacgg cgatcgacag catcttctcg
     2881 agcttctcgc cttcggggtc ctcgcaggcc gacccgagcg ggcgcgtcgc cgccaccttg
     2941 gcgaggtgca tgcatagatc cgaggtgccg ccgacgccga cgccgacgat agtcggcggg
     3001 cacacgcggc cgccgagctc gatgaccttg tcgaccacga aggtcttgat gccgtcgatg
     3061 ccctgcgccg ggatgagcat ctgcaggaac gagccgttct cgctgcctga gcccttcggg
     3121 atcatctcga tgcggatctg gcgggctgag tcgtcgaagt cgacgttgat gaccgggatg
     3181 ccgcgcccgc aggaggtctg ctcgttgatc cgggtgatcg ggtgcaccac ggaggagcgc
     3241 aggggatgct cgcgcgtcgc ccgctccgcg ccgcggcgca gcgcctcctt gagcgcgacg
     3301 ccgtcgaggc gcacgtcgcg gccgacgacg acgttgtaga tcgggatgcc ggtgtcctgg
     3361 cacaggaggt tccgcgtgcg ctcggcgacg gcgatgttct ccaccatggt gccgaggatg
     3421 gtcttcgccg tgccgtcggt ctcgtcgcgc tggagacgct cgaagccgcg cttcacctgc
     3481 ggcggcagga ttttcagcgc acggatgtag agctccttcg cggtctcctc gatggtccgg
     3541 tagtcgagct cgaactggtc tgcgaggacg gtggtcatcg gtcaggctcc gacgttcaag
     3601 aggaagaaga ggccgacgag ggcggcaaag cccagggtcg ccgcgacggc gcgctggtgc
     3661 caatcgcgcc agccgacgaa ctcgaggagc agcaggcgca cgccgccggc gaggtgcgcg
     3721 gccagcagga acacgaggcc gaactcggcc gccttggtga gcgggttgtc ggtccagcgc
     3781 aggaacgtct cgaggcgcgc ctcgccctcg atggcgtggc cgagcgccca gaaatgcacg
     3841 ggcaggaaga gcgccagcgc aagcccggag atgcggtgga tcgcaaaggc ccaaaaaccc
     3901 cggtgcgcgc gccggcgcag ggtcgagcgg cgatcgaaga gcgccgtcga ggtcatcgat
     3961 agagcccgat ggcggcccgg aggcccgcgg cgaaaaccag gacggcgaag acaagggcga
     4021 acgcgtccaa gcgccgcccg cgccagcgca gggtctcggc gacgatggtg cgcaggccga
     4081 tggacgcgtg gatcgccacg gcggcggtga acacggcgta gaagccgagc cacgcggcgt
     4141 tgccgcgggt gcgtgccagg atctcgcccg ccgagaggcc gccgcgaacg gcatacacga
     4201 tggtggcgat gtggatgacg atgcaggcgg cgagcaccac ggccgacagg cgctgagcca
     4261 gccacagccg cacctcgagg cgcgtgcgcg cccgagccgg aacggccgcg acggcgctca
     4321 caggtcgccc ctgagcgtcg ccatggcgac aagacgcttc aggcccgcga tcgcgcctgt
     4381 cgggttcagt gctttcgggc agtaggtctt gcagctctgg tggctgtggc aggcgtggca
     4441 gcccgcgtcg cccgagacgg cggcgaggcg ctcggcctgg ccctcgtcgc gcacgtcgtt
     4501 gacgagggtc caggcgcggt tcagcgcggc agggccgaga tagtcggggt tccacgcgac
     4561 gacgtcgcag gccgagtagc atacggcgca gccgatgcac tcgatggcct cgtcggcggc
     4621 gcggcgcttg gggctcgtcg gctccacgac ggcgaagtcg gcggcagcgt cggccgacgg
     4681 cgtgaacgag cccttggcgc gctcccactt gtcgaagaac gccgccatgt cgaccgcaag
     4741 gtccttgatg atcggcaggt tgcgcagggg ctcgatggtg atctcgcgcc cgtccgtcac
     4801 cttcgagacg tgcgtgcggc aggtccagcg cgggcgccca ttcaccgtca tggcgcagga
     4861 gccgcacatg ccgacgcggc aggcgaagcg gtacgagagg gacggatcga gctcgcgctg
     4921 gatgtaggtc acgacgtcga ggacggtctg gttctcggac ggcggcaccg cataggcgtc
     4981 gaagccgccc tcctgcgtgc cgcgccacac cttcacgcgc agcgcttccg tctggtgctt
     5041 cggcgccacg tgcttcgatc ctccctcgcc gttttgcgcc aacctagaag cctccctcat
     5101 gccacgcacc tgcaaaatcg tcgctacagc acgagcgtca ggccggaggc gacgagaagc
     5161 gccgccagca cctgccggaa gcggcggtca tcgagacggc catagatgcg ccagccgatc
     5221 catgcgccgg cgtagagcgc cggaagcgcg gcaagcgtca tgagcgcgcc gcccgtgtcc
     5281 atggcggcga tgccgacgag caccagcgtc accacgtgcg ccatgaggat gaagggctgg
     5341 aatacgccgc gggcgacgtc cttgcgccag ccgcgcagct gcgtccagat cgtcggcagc
     5401 acgcccgagt agccgccgag cccgcccaga atgcccccga cgaagccgac cgcggcatcg
     5461 gccgcgcggc caccgccccg gatctcgggc aggcgcggcg ccagcagcgc ataggtgccg
     5521 taaacgacga ggaacaggcc gagcgcgcct ttcagccccc gcgtgtcgac atgggtcaga
     5581 agagctacgc cgatcgggat gccgatcagc ccgccgatgg caaagggcaa caggcgcgcc
     5641 ggctcgatgc tgcgccggac cggccatacg agggtgacgt gcaggagcgt gccgcaggcg
     5701 acgacgagca tggtcgtgtg cacgggctcg agcgcgtgca gccagaccgc cgacgccgtg
     5761 agggcgaacg cgaaccccgc gccgcctgcc gcgaccgcgc cgaggaaggc gccgagccag
     5821 acgacgccga gcgtctggag ggtcagcgag gccatcatgg caggagccag cgcgatgcgg
     5881 cgaggagggt gagcggcatg gtcacggcgg cgagcagcgt ctggaacgcg atgatgccgg
     5941 ccatgagggg cgcgtcgccc ccgagctggc gcgacaggat gtaggccgac gacgccgtcg
     6001 gcagggaatg gaacagcatg gcgacaaagc ccgcctcgcc gagcaccccg aatgcgacgc
     6061 agaacgccgc cgtcacggcc ggcatcacgc cgaacttcac caccgacgcg gcggccgcgg
     6121 tgcgcatgcc gaagcgcatg gcggcgggct cgatggccgc gccgacgcac aggagaccga
     6181 tcggtaggga ggcctggccg agggcgcgga agaccccctc gactccgagc ggaatcttga
     6241 ggccgatgcc ctggaacagc gctccgagaa ggcacgagag cacgaggggg ttcgtggcga
     6301 ccgtcttcac gacgccggcg agcgggacgc gcgtgcggcc gtaccgcgtg aagaccagga
     6361 tgcagagcac gttggcgacc gggacgatga cggcattgca gaccgccgcg agcgcgaggc
     6421 cgttggcgcc cagaagccct ccggcagccg tgaggccgac gtagttgttg aaccgcaagc
     6481 cgccctggaa cgcggacgtg aaggccggcc catcctcgac gatgagccgg cgcgacgcga
     6541 tcatcacggc ggcggtcgcg catagggcgg cgaccagaac ggccgccagt cccccgatct
     6601 gcacggcccc aaggtccgcc atggcgaggc tgtggaacag aagcgccggc agcaggaaga
     6661 agtaggcgag ccgctcggcc tggggccaga aggcctcccc gatgaacccg ctcgcgcgca
     6721 acgcgtagcc gaccgcgatc aggccggcga cgggaacgag cgcgaggagg atggagccga
     6781 gcaaaagacg ctttcaatcg aggggcgcgc atccctctcc gcgaggggag ggcggagacg
     6841 ggcgggtcag cgcccgcccg ggtggggcgg aaccacagtg agggcgagct gaatggggct
     6901 tccgccccac cccgctcgcg cctgcaggcg cgagtcggcc ctcccctcgc ggggagggat
     6961 ttcctcagct tccgggcatg gtgtggatgt cctcgaagaa gaggtctttc caggtgtccg
     7021 gcttcgacgg gatgacgccc gtgcgcgcca tgaactcggc gtaggccatg atcttcttcg
     7081 gcgtcatggt ccactcgttc tcagggagcc ggatcatctt ctcggcttcc gccgccgaca
     7141 tcctcgactt ctccgccttg gtccacgtca aggcggcgtc cgcagggtcg gccttgatgt
     7201 gggcgatcga gcggtcgagc gccgccacga aggcgcggat cagcttcggc tcttccttgg
     7261 cgagcttccc ctgggaccac acgaggttga aggtgtgcgg cccgccgagc acgtcgtagc
     7321 tgtcgagcac cttgcgcacc cgcgggtcgg cgagctcgtc gtacatgaac ggcgccgagg
     7381 tgaagtgcgc cgtaatgccc gactggccgc ccatcatggc cgcctgagcg tccgggtggc
     7441 cgagggagac cgtccaggcg tcgagcttgc cgtgctggcc cgggccgaag gtcttctcgg
     7501 ccgccatctg caacgtcacg gcctggatcg acgtgcgcac cgccgggagc gcgatccgat
     7561 ccttctcggt gaagtcggcg atggtcttca cgttcggatt gatggtgttg aggaacagcg
     7621 gcatggcgtt gagcgccgcg accgccttga cgccgatatt ggcgcgggtg cgcgaccaga
     7681 tggtgaggag cgggccgacg ccgccggagg cgaagtcgag attgcccgac aggatcgcct
     7741 cgttcatggc gttgccggcc gagaactgga tccattcgct cttgaggtcg agcccgagct
     7801 tcttgccctc ctcctcgagg aagcccttct gctccatgat ggtgagcggc aggtagctga
     7861 tgccgaactg cttcgcgagc ttgacggtcc gcgtctgagc ctgcgcgtca gcgccggcga
     7921 gggcggcgac gcagagcgcg cccgcgacga gcgcccttcg cgtgagtgtc atgaccattg
     7981 gcgtcctccc ttgatgcggg gcttgagccc cgcgttatgc gcgggccttc aaggcccgct
     8041 ttgcctatcg acgcacgctc aacccggctc acatctgttc gagatactcg gccgggtcga
     8101 cgagtgcgtc gataatggtg aagcgccgcg ccgcgacggc gtcgtcgagg gccgcctcga
     8161 gatcgcgcag cgtggtgacg cgccgcccga cggcgccgaa gccggcggcg agcacgtcga
     8221 accggggcga gcggaagtcc acggcgcggg gctcgagctg catcttgcgc tgcttgagct
     8281 tgatgaggct gagggcgtcg tcgttcagga ccaccacgac gagaggcagg tcgagctccg
     8341 ccgcgagcgc catgtcgccg aggctcatga gcgcgcagcc gtcgcccacg agggcgacga
     8401 ccgtgtggtc cggccggacg agctgcgcgc cgatggcggc cggcagcgcg tagcccatgt
     8461 ggccgaggcc gttcgactgc aggagctgcc cgggcgtgcg gcagcgcagg acgtggttcg
     8521 ccaggatgcg gtgcgcgccg acgtcgaccg tcagcgtcca gtcttcccgg atgcgcgcgt
     8581 ccacggcggc gaacagcgcg gccgggctga tggtcccgtc gggatcgcgg gggcgtacga
     8641 cgtgggcgac ggcgcgacgg tgatcgtcga gcctctgcgc cggccagccg gcctgcgcga
     8701 ctgcctcgcg cgagaggctg gccaggatcg ccggcaggtc gccgaatgct tcttcagccg
     8761 ccgggaacat gcggtgccct agcgtgcccc agtcgatggc gatgcagggc ttggccgggt
     8821 cccaggcgtt cagccatgcg tcgcgcagct cgatagggtc gaagccgatg agcacgaggc
     8881 aatcggcctc ggcgacgagg cgcaggttct cgtcgtcgac ggtcgggctc aggccgaccg
     8941 cgccgaggca cagggggtcg tgctcgtcga ggacgccctt ggccttgtag ctcgtgaggc
     9001 acgggatgcc ccagccgcgc aggaacgcgc gagcggcggc gggtgcgtcc ccgtgcaggg
     9061 cgccgaggcc gacgagggcg agcgggcgtt gcgcgccggc gatgagcgcc cgcaggcgct
     9121 cgccatggtc tcgcccgagt tccacacccg cccgccgtac cggccgggcg ggaggctcgt
     9181 ccggcgctgc ggcgcgggac tggtcggcgg gcacgttgag catcaccggc ccgggcgggt
     9241 aggcaagcgc gatgtcgagc gccttggcca cgtgctgcgc cggccgctgc gcgttcagca
     9301 t
//
LOCUS       DASQWN010000228         3890 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1230343, whole genome shotgun sequence.
ACCESSION   DASQWN010000228 DASQWN010000000
VERSION     DASQWN010000228.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 3890)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3890)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3890
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1230343"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..526
                     /locus_tag="VE686_04345"
     CDS             <1..526
                     /locus_tag="VE686_04345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018642496.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0030552 - cAMP binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="Crp/Fnr family transcriptional regulator"
                     /protein_id="HYY83715.1"
                     /translation="SGKRQIVAFHIGGDIPDLQSAQLEVLDTSLGTLTRAKVAFIRHE
                     AINDTCERHFRLARALWRQTLIDAAIFREWVVNVGRREALNALAHVMCEFVLRMRSMG
                     LADGSDCELPMTQAELGDALGISTVHVNRTLQELRAAGLIRLQGARLTVLDWEGLKAV
                     GEFDPTYLHLSKAA"
     gene            526..762
                     /locus_tag="VE686_04350"
     CDS             526..762
                     /locus_tag="VE686_04350"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY83716.1"
                     /translation="MARYFFDLRDGDRFSADDEGTELEGAEEVRAQVMQALPAIAAQQ
                     IRKDGDRADFEMTVRDASGHEVMRATLSFALTQP"
     gene            909..1142
                     /locus_tag="VE686_04355"
     CDS             909..1142
                     /locus_tag="VE686_04355"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY83717.1"
                     /translation="MPRYFFNIHDGKSFIDRQGTELPDLAAVRREAVHTSAKVLKDSA
                     DYWDGTEWRMEVLDEAHELVLRLNFTATAHPAV"
     gene            1412..2527
                     /locus_tag="VE686_04360"
     CDS             1412..2527
                     /locus_tag="VE686_04360"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase"
                     /protein_id="HYY83718.1"
                     /translation="MFGPIGIAVAREGIPWPLVDRGDGSLDFSCLDAFLAAQRQHGIL
                     PIWDLCHYGYPDDLDPLSDAFVLRFAAYARAAARYVAERAHHGPLLFTPMNEPTFWGY
                     MGGEWAWCAPFGRDRDYRARFTCMLARADVAAVKAIREDFPEARMVHIDPLVWVVPPR
                     DRPELADAARRESFDDAYLAWDIISGLKHPEYGGSPEVIDILGLNNYSFGQLEYRERG
                     PHKPLEPGDDRIRSVCDLVEEAWRKYKRPCIIAETAGRGPGRPHWLNDITNECLAAMR
                     RGVDLHGICLFPAVDMADWHTGEWLRMGIADVERMPDGKLLRTPNRAYVDALHLWQKR
                     LERATSLDEDPFSDPVDLNLVAQVAVEIGASDDKDWA"
     gene            2832..3542
                     /locus_tag="VE686_04365"
     CDS             2832..3542
                     /locus_tag="VE686_04365"
                     /EC_number="2.3.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018261458.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016746 - acyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0071972 - peptidoglycan L,D-transpeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0018104 - peptidoglycan-protein
                     cross-linking [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="L,D-transpeptidase"
                     /protein_id="HYY83719.1"
                     /translation="MMVNARNADAGLTDDAAVLGPRSGLLDRRSLLFGAAVSVGALSL
                     GGCVTQDGMSVAEASKLYGPVPDEKFPIPAVDISKVDPKYYRRTIPYDSKEVAGTIIV
                     DPRNYYVYRIEGDGAATRYGANVGRDGFRWSGDAYVGRKSEWATWTPPREMIKRQPEA
                     AKWARGMPGGLENPLGARTLHLYQNGAYTLYTVYASSDPESIGSGVTSGCVGLLSQDM
                     IHLYSRTPVKTKVVVLPA"
     gene            3651..>3890
                     /locus_tag="VE686_04370"
     CDS             3651..>3890
                     /locus_tag="VE686_04370"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY83720.1"
                     /translation="MYGSAMARFRSLSALLLALCALFSACGDSILAVNTPAGSNEASY
                     RAHPASNQVASPWALLAVSDDDDDHGDHPRTWMPLL"
BASE COUNT          655 a         1300 c         1279 g          656 t
ORIGIN      
        1 gagcggcaag cgccagatcg tggcgttcca catcggcggc gacatccccg atctgcagag
       61 cgcccagctc gaggttcttg acaccagcct cggcaccctc acgcgcgcaa aggtcgcctt
      121 catccggcac gaggccatca acgacacctg cgagcgccac ttcaggcttg cacgcgcgct
      181 ctggcgccag acgctcatcg acgccgcgat cttccgcgag tgggtcgtga acgtgggcag
      241 gcgcgaggcc ctcaatgccc tcgcgcatgt catgtgcgag ttcgtgctgc ggatgcggtc
      301 catggggctg gcagacggct cggactgcga gttgccgatg acgcaggccg agcttggcga
      361 cgcgctcggg atctcgacgg tgcacgtcaa ccgcaccctc caggaactcc gagctgccgg
      421 actgattagg ctgcaaggcg ctcgtctcac ggtactggat tgggagggat tgaaggcagt
      481 gggcgagttc gatcccacat acctgcatct gtccaaggct gcctgatggc gcgctatttc
      541 ttcgaccttc gggacggcga ccgcttttcc gcggacgacg agggcacgga gcttgaagga
      601 gccgaggagg tgcgcgccca agtgatgcaa gcccttccgg ccatcgcggc gcagcagatc
      661 cgcaaggacg gcgatcgcgc cgacttcgag atgacggttc gggacgcctc gggccatgag
      721 gtcatgcgcg ccaccctgtc gttcgccctg acgcagccat aagcccgcgc gccgacgccg
      781 cagcgcacca ggatgcggcc gaaccaatca tatgttaaac cgttggggta gcaccacggc
      841 gcaatcgcct cgggccgccc gtggccgaga gacaacctgc gctcccgcct ttcatgatgg
      901 gaagctgcat gcctcggtac tttttcaaca tccacgacgg caagtcgttc atcgaccgcc
      961 aggggaccga gctgcccgac ctcgcggccg tgcgtcgcga ggccgtccac accagcgcca
     1021 aggtgctgaa ggacagcgcc gactactggg acggcacgga gtggcgcatg gaggtcctgg
     1081 acgaggccca cgagttggtc ctgcgcctca acttcaccgc gaccgcgcac cccgccgtct
     1141 gagagcccga aaggccaaag gcctgagggg gctcgaccgt ggccgcgtag cctttggctg
     1201 caaggtcggt aagatgatcg cgcactcggg gccgccgaat gaaccagcat catccgtcgg
     1261 acgtggtggc gacgtgacgg cccgtccctc gctttttccc actttcttcc tgtcggggtt
     1321 cgagtgctcg acctttcttt ggaaggacgc tggccggcgt gatctctcgg gcgagctcca
     1381 gcattacgag caggccgatc aagactacgc catgttcggg ccgatcggga tcgcggtggc
     1441 gcgtgaaggg ataccctggc cgctggtgga tcgcggcgat ggaagcctcg atttctcctg
     1501 cttggatgcg ttcctggcag cccagcggca acatggcatc ctgccgatct gggacctgtg
     1561 ccactacggc tatcccgacg atctcgatcc gctgagcgat gctttcgttc tccgtttcgc
     1621 cgcctacgcg cgcgccgccg cccgctacgt cgccgagcgc gcgcaccacg gcccgctcct
     1681 gttcacgccc atgaacgagc cgaccttctg gggctacatg ggcggggaat gggcctggtg
     1741 cgccccgttt ggccgtgacc gtgactaccg cgcccgcttc acctgcatgc tggcgcgcgc
     1801 cgacgttgct gcggtcaagg cgatccggga agactttccc gaggcgcgca tggtgcatat
     1861 cgaccccctc gtctgggtcg tgcccccgcg cgaccgcccc gagcttgcgg acgcggcgcg
     1921 tcgcgagagc ttcgacgacg cctatctggc ctgggacatc atctcggggc tgaagcaccc
     1981 cgaatacggc ggcagcccgg aggtgatcga tatcctggga ttaaacaact acagcttcgg
     2041 tcagctcgaa tatcgcgagc gcgggccgca caagccactg gagcccggtg acgatcgcat
     2101 ccgctccgtc tgcgacctcg tcgaggaggc ctggcgcaaa tacaagcggc cttgcatcat
     2161 tgccgaaacg gcgggccgcg gcccgggccg cccgcactgg ctcaacgaca tcacgaacga
     2221 atgtctggcg gcgatgcgcc gaggtgtcga cctgcacggc atctgcctgt tcccggccgt
     2281 cgacatggcc gactggcaca cgggcgaatg gctgaggatg ggcatcgcgg acgtcgagcg
     2341 catgcctgac ggtaaactgc tgcggacacc caaccgcgcc tatgtcgacg cgctgcatct
     2401 ctggcagaag cggctggagc gcgcgacatc gctggacgag gatcccttca gcgatcccgt
     2461 cgacctcaac ctcgtcgcgc aggtcgcggt cgagatcggc gcgtccgacg acaaggactg
     2521 ggcatgagga cgacggccta gcgacccggc agctcaacgg agtgcccggc tgtggatcag
     2581 gcgatctcgg tcccggtccg gagggacggc ccggagcagg cgcctgggcc tggtgatcgg
     2641 tggcgttgca gacgggcgcg agcggcgcta tcccccgggc agcatccttt tgctactgag
     2701 cacgtttcgc ggccaaggct ggcgcttgcc agtcgagccg tgtgacggca gcttcaactc
     2761 ggcaacgatg cgttcagcgg gcgcatgctt gtatgcctgg tcaggcggca gcgcgtggga
     2821 aatcagaggt catgatggtg aatgctcgga acgccgatgc cggcttgacg gatgacgcag
     2881 cggtgcttgg gcctcggtca gggcttctcg accgccggtc gcttctgttc ggcgcggccg
     2941 tcagcgtcgg cgccctgtcc cttggcggct gcgtgacaca ggacggcatg agcgtcgccg
     3001 aagcgtcgaa gctctacggg ccggtgcccg acgagaaatt cccgatcccc gctgtcgaca
     3061 tcagcaaggt cgatccgaaa tactatcgcc ggaccattcc gtacgacagc aaggaagtcg
     3121 ccggcacgat catcgtcgac ccccgcaatt actacgtcta ccgcatcgag ggcgacggag
     3181 cggccactcg ctacggcgcc aatgtcggcc gcgacgggtt ccggtggagc ggggacgcgt
     3241 atgtcgggcg caagtccgaa tgggcgacct ggaccccgcc ccgggagatg atcaagcgcc
     3301 agcccgaggc ggccaagtgg gcccgcggca tgccgggcgg cctcgagaac ccgctcgggg
     3361 cacgcacgct ccatctctat cagaacggcg cctatacgct ctataccgtc tacgccagca
     3421 gcgacccgga atcgatcggc tcaggcgtga ccagcggctg tgtcggcctg ctcagccagg
     3481 acatgatcca cctctactcg cgaacgccgg tcaagacgaa ggtggtcgtc ctgccggcgt
     3541 aggcagaagc ttcagcgttg cctcgggcta gacccgctgg agaactcgtc gagcgccggt
     3601 cccagcttac cctgcggcag atcgaccttc taggcggacg gacgcgcgcc atgtacggtt
     3661 cggcgatggc gcgcttccgc agcttgtccg ctctgttgct tgccctctgc gccctgttta
     3721 gtgcgtgtgg ggacagcatc ctcgcggtca atacgccagc aggctcgaac gaggcgagct
     3781 accgcgctca cccggcgtcc aaccaggttg catcgccgtg ggccctcctg gctgtgagcg
     3841 atgacgacga cgaccacggc gatcatccca ggacctggat gccgttgctt
//
LOCUS       DASQWN010000229         2088 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_813309, whole genome shotgun sequence.
ACCESSION   DASQWN010000229 DASQWN010000000
VERSION     DASQWN010000229.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2088)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2088)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2088
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_813309"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..975)
                     /locus_tag="VE686_04375"
     CDS             complement(<1..975)
                     /locus_tag="VE686_04375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009763362.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SPFH domain-containing protein"
                     /protein_id="HYY83721.1"
                     /translation="MPFGFDLFVGAIVLVVVVTIAMGVRTVPQGYAYTVERFGRYSRT
                     LGPGLGLILPYVEQVGKKVNVMEQVLDVPSQEAFTRDNAGVTIDAVAFFQVLDAARAS
                     YEVSNLNQALLTLTMTNIRTVVGSMDLDELLSHRDEINERLLRVVDAAASPWGVKVTR
                     IEIKDILPPADLAGAMARQMKAERDKRAAVLEAEGLRQAAILRAEGDKQSQILSAEGR
                     KEATFRDAEARERQAEAEAKATTMVGEAIGRGDLAAANFLVAEKNIEALRAIATAPNQ
                     KVVIVPIEAAGLAGTLGGIAEITRAVFGDGGAQQLPPRPGRSLPPSSGT"
     gene            complement(1103..>2088)
                     /gene="hemH"
                     /locus_tag="VE686_04380"
     CDS             complement(1103..>2088)
                     /gene="hemH"
                     /locus_tag="VE686_04380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012253087.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004325 - ferrochelatase activity
                     [Evidence IEA];
                     GO_process: GO:0006779 - porphyrin-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="ferrochelatase"
                     /protein_id="HYY83722.1"
                     /translation="IGVLLMNLGTPEATDYWSMRRYLKEFLSDRRVIETPRLLWWPLL
                     NLVILTTRPGRKGRDYDTIWNRERNEGPLKTITRAQAEDLAAHLHGTAGDRIVVDWAM
                     RYGKPEVGARIRALLEQGCDRILLVPLYPQYSAATSATACDQAFRALMEMRWQPSVRV
                     SPPYHDDPVYIDALVASMRRSLEGLAFEPEVILVSFHGVPKEYLLKGDPYHCHCVKTW
                     RLMQEAFGWPVDRFRMSFQSRFGKAEWLQPYTDKTVQALAESGVKRMAVVAPGFSADC
                     LETLEELDGENREIFMHHGGEQFAYLPCLNDSQDGMRVIRHVVERELKGWL"
BASE COUNT          317 a          701 c          729 g          341 t
ORIGIN      
        1 cgtaccgctc gagggtggca agctccggcc cggccgaggc ggaagctgct gcgcgcctcc
       61 gtcgccgaac accgcccgcg tgatctcggc gatgccgccg agggtgcccg cgaggcccgc
      121 ggcctcgatc ggcacgatca cgaccttctg gttcggcgcc gtggcgatgg cgcgcaaagc
      181 ctcgatgttc ttctcggcga cgaggaagtt cgcggccgcg aggtcgcccc ggccgatcgc
      241 ctcgccgacc atcgtcgtcg ccttggcctc ggcttcggcc tggcgctcgc gggcctccgc
      301 gtcgcggaag gtcgcctcct tgcgcccttc ggcggagagg atctgggact gcttgtcgcc
      361 ctcggcccgc aggatcgcgg cctggcgcag gccttccgcc tcgagcacgg cggcgcgctt
      421 gtcgcgctcg gccttcatct ggcgcgccat cgcgccggcg agatcggcgg gcggcaggat
      481 gtccttgatc tcgatgcggg tgaccttgac gccccagggc gaggcggccg catcgacgac
      541 ccgcaggagg cgctcgttga tctcgtcgcg atgcgacagg agctcgtcga ggtccatgga
      601 gccgaccacc gtgcggatgt tggtcatggt cagggtgaga agcgcctggt tgaggttcga
      661 gacctcgtag gaggcgcggg cggcgtcgag cacctggaag aacgccaccg cgtcgatggt
      721 gacgcccgca ttgtcgcggg tgaaggcctc ctggctcgga acgtcgagca cctgctccat
      781 gacgttcacc ttcttgccga cctgctccac gtagggaagg atcaggccga ggccgggccc
      841 gagggtccgg gaatagcgcc cgaaccgctc gaccgtatag gcgtagccct gcggcaccgt
      901 tctcaccccc atggcgatcg tcacgacgac gaccaggacg atggcaccca cgaagagatc
      961 gaaaccaaac ggcatgaagc ctcccggcaa cgagaccatg ttgcgtgagg ctcagcttta
     1021 tccgaaagcc gcggtgccgc ctagggcgct tcctttacgg ggaatcggct cccttctcga
     1081 tgagccggat gtcttgacga ctttacagcc agcctttgag ctcccgctcc acgacgtggc
     1141 ggatcacccg catgccatcc tggctgtcgt tgaggcaggg caggtaggcg aactgctcgc
     1201 cgccgtggtg catgaagatc tcgcggttct ccccatcgag ttcctcgagg gtttcgaggc
     1261 agtcggccga gaagcccggc gcgacgaccg ccatgcgctt gacgccgctc tcggccaggg
     1321 cctgcacggt cttgtccgtg tagggctgga gccactccgc cttgccgaag cgcgactgga
     1381 agctcatgcg gaaccggtcc accggccagc cgaaggcctc ctgcatcagc cgccaggtct
     1441 tcacgcaatg gcagtgatag gggtcgccct tgaggaggta ttccttcggc accccgtgga
     1501 acgacaccag gatcacctcc ggctcgaagg cgagcccttc gagggagcgc cgcatcgagg
     1561 cgacgagcgc gtcgatatag accgggtcgt cgtgataggg cggcgagacc cgcacgctcg
     1621 gctgccagcg catctccatg agggcccgga aggcctggtc gcaggcggtc gccgaggtgg
     1681 cggcggaata ttgcgggtag aggggcacga ggaggatgcg gtcgcagccc tgctcgagca
     1741 gggcccggat ccgggcgccg acctccggct tgccgtagcg catcgcccag tcgaccacga
     1801 tccggtcgcc ggcggtcccg tgcaggtggg cggcgagatc ctcggcctgg gcgcgcgtga
     1861 tggtcttgag cgggccctcg ttccgctccc gattccagat cgtgtcgtag tcgcggccct
     1921 tgcggcccgg ccgcgtcgtc aggatgacga ggttgaggag cggccaccac aggagccgcg
     1981 gcgtctcgat gacccggcgg tcggacagga actccttgag gtagcggcgc atcgaccagt
     2041 agtcggtcgc ctccggggtg ccgagattca tcaggagcac gccgatcc
//
LOCUS       DASQWN010000230         2206 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_515755, whole genome shotgun sequence.
ACCESSION   DASQWN010000230 DASQWN010000000
VERSION     DASQWN010000230.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2206)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2206)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2206
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_515755"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1159
                     /locus_tag="VE686_04385"
     CDS             <1..1159
                     /locus_tag="VE686_04385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019198037.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="TRAP transporter large permease subunit"
                     /protein_id="HYY83723.1"
                     /translation="GAILSPPVLGAAAFLIAEFLKISYLDVIWMALIPTCLYYLSLLI
                     MVELDAKRFGARDIDFEQELTLGQMTRRYGFHFISLVAVVIFMLIGYSPMLSVFYATA
                     ATFLLSFLRRDTALVPPKLMRALADGSIGALNAATTCASAGIVVGVVTLTGLGLKFSS
                     IVIAYAGGSLLLTAIYTALIVWIIGLAVPVTASYIICAVIAAPALTKLGVPDFAAHMF
                     IFYYAVLSEVSPPTALSPFAAAAITGADPYRTTLQSWKYTLPAFLVPFVFVLDPMGVG
                     LLLKTPPGGSWVDIILITLKSALGLAALAAAAQGWTLRRNTAVEGVLLVVAGLLLVFP
                     SLMEALAEAITGRDISYTAAAGLVIGGAVVLWQAMRPAVVAPAAPTTNTRE"
     gene            1177..2133
                     /locus_tag="VE686_04390"
     CDS             1177..2133
                     /locus_tag="VE686_04390"
                     /inference="COORDINATES: protein motif:HMM:TIGR02122.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TAXI family TRAP transporter solute-binding
                     subunit"
                     /protein_id="HYY83724.1"
                     /translation="MLRGAALAAVGALLAVGPVQAQQKTIAIGTGGTGGVYYPLGGAM
                     ANVLSKYLPGVQATAEVTGGSVDNLKLIGSGQSEIGFSMADAALDALQGQDKFKSGKV
                     PLQTLMVLYPNRMHVVTIEGTGIDKVTDLKGKRVSTGSPGSATEVMAFRVIEAAGLDK
                     DKDLKRERLSVAESVNAIKDRKIDAFFWVGGIPTAAVTDLAATPGVKMKLIDHGDLAE
                     KMNAKYGKLYAAGTIKAGVYPGTDKDNTIVDVWNILVTGDKMNEDTAYNIVKTLVEKK
                     AELVAVHKEAEAFSIENQKQEKSPVPFHPGALRYFKEKGVGG"
BASE COUNT          348 a          768 c          718 g          372 t
ORIGIN      
        1 cggcgccatc ctgtcgccgc cggtcctcgg ggcggcggcc ttcctgatcg ccgagttcct
       61 gaagatcagc tacctcgacg ttatctggat ggcgctgatc ccgacctgcc tctactacct
      121 gtcgctcctc atcatggtgg agctcgacgc caagcgcttc ggcgcgcgcg acatcgactt
      181 cgagcaggaa ctgacgctcg ggcagatgac ccggcgctac ggcttccact tcatctcgct
      241 cgtcgccgtc gtcatcttca tgctcatcgg ctactcgccg atgctgtcgg tgttctacgc
      301 caccgccgcc accttcctgc tgagcttcct gaggcgcgac acggcgctcg tgccgccgaa
      361 gctcatgcgc gcactcgcgg acggctcgat cggggcgctg aacgcggcga cgacctgcgc
      421 atcggcaggc atcgtcgtcg gcgtcgtgac cctgacgggc ctcgggctca agttctcgtc
      481 gatcgtcatc gcctacgcgg gcggcagcct tctgctgacg gcgatctaca ccgccctcat
      541 cgtctggatc atcggcctcg cggtcccggt gacggcctcg tacatcatct gcgcggtgat
      601 cgccgcgccg gcgctgacga agctcggcgt gccggacttc gcagcgcaca tgttcatctt
      661 ctactacgcg gtcctgtcgg aggtctcgcc cccgaccgcc ctgtcgccct tcgcggcggc
      721 ggccatcacg ggcgccgacc cctaccggac gacgctgcag tcgtggaagt acacgttgcc
      781 ggcgttcctg gtgccgttcg tgttcgtgct cgaccccatg ggcgtcggcc tcttgctcaa
      841 gacgccgccg ggcggctcgt gggtcgacat catcctcatc accctgaagt ccgcgctcgg
      901 cctcgcggcc ctcgccgcgg cggcgcaggg ctggaccttg cgccgcaaca cggccgtcga
      961 gggcgtcctg ctcgtcgtcg caggccttct cctggtgttc ccgagcctga tggaggctct
     1021 cgccgaggcc atcacggggc gcgacatctc ctatacggcg gccgccggtc tggtgatcgg
     1081 cggagccgtc gtgctatggc aggcgatgag gccggcagtt gtcgcgccgg cggctccaac
     1141 cacgaataca cgggagtgaa attgatgctt agagctatgt tgaggggagc cgcgttggcg
     1201 gcggtcggcg ccttgcttgc cgtgggtccc gtccaggcgc agcagaagac gatcgccatc
     1261 ggcaccgggg gcacgggcgg cgtgtattat ccgctcggcg gcgccatggc gaacgtgctc
     1321 tcgaagtacc tgccgggcgt ccaggcgacg gccgaggtga cgggcggctc cgtcgacaat
     1381 ctcaagctca tcgggtccgg ccagagcgag atcggcttct ccatggccga tgccgcgctc
     1441 gacgccctcc agggccagga caagttcaag agcggcaagg tcccgctcca gacgctcatg
     1501 gtgctctacc cgaaccgcat gcacgtcgtg accatcgagg gcaccggcat cgacaaggtt
     1561 acggacctga agggcaagcg cgtgtccacc ggctcgcccg gcagcgccac ggaggtcatg
     1621 gccttccgcg tcatcgaggc tgccggcctc gacaaggaca aggacctgaa gcgcgagcgc
     1681 ctgtccgtcg ccgagtccgt caacgccatc aaggaccgca agatcgacgc gttcttctgg
     1741 gtcggcggca tcccgacggc ggccgtgacg gaccttgccg cgacgcccgg cgtcaagatg
     1801 aagctcatcg accacggcga cctcgccgag aagatgaacg ccaagtacgg caagctctat
     1861 gcggccggca ccatcaaggc gggtgtctat ccggggaccg acaaggacaa caccatcgtc
     1921 gacgtgtgga acatcctcgt caccggggac aagatgaacg aggacacggc ctacaacatc
     1981 gtcaagacgc tggtcgagaa gaaggccgag ctcgttgccg tgcacaagga ggccgaggcc
     2041 ttctcgatcg agaaccagaa gcaggagaag tcgccggtcc cgttccaccc gggtgcgctg
     2101 cgctacttca aggagaaggg cgtcggcggc taaggccgcc ggcattcctc agggcgaggt
     2161 ccggcccggg ccgcgcctcc gtcagccgcg gccccgcagc ggctcg
//
LOCUS       DASQWN010000231         2028 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1330584, whole genome shotgun sequence.
ACCESSION   DASQWN010000231 DASQWN010000000
VERSION     DASQWN010000231.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2028)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2028)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2028
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1330584"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..599
                     /locus_tag="VE686_04395"
     CDS             <1..599
                     /locus_tag="VE686_04395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012334213.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY83725.1"
                     /translation="PHLDLLRRLAHWLMKEPGLEEEALRATVAGREIRIERQTMGEDP
                     GPVTVTGPSGAERSIAVRDEKPGLYAAQVQSRELGLHSVRSGDLVAFVSVGPANPREL
                     ADVFSDTERLRSIAEATGGSVRRIAGDAGDDVTVPRIQAVRSGTRFAGADWIGVRPSD
                     SAIVRGVSVFPLAIGLLGLALLIGATLAAWIAEGRNRA"
     gene            complement(1065..1457)
                     /locus_tag="VE686_04400"
     CDS             complement(1065..1457)
                     /locus_tag="VE686_04400"
                     /EC_number="3.1.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012110214.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0047617 - acyl-CoA hydrolase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PaaI family thioesterase"
                     /protein_id="HYY83726.1"
                     /translation="MTQSAGMPFADLLGIRVLEATPERVRAELVVRDDLCTRPAVLHG
                     GAVMAFADSLGAIATVANLPEGAWTTTVESKTNFIGAAPVGDTVIGECTPLHRGRTTM
                     VWQTKLTRADGRVVAYVTQTQLVTTPKA"
     gene            complement(1454..>2028)
                     /locus_tag="VE686_04405"
     CDS             complement(1454..>2028)
                     /locus_tag="VE686_04405"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY83727.1"
                     /translation="LAAIAFSLSGFVTWGLPLHAIEILKGLGLPAATAVLVGTLIGPS
                     QIAARIGEVVFGGRAGILVVGVVAMALMPLAVALPLVAETSVGIAAAFMVGYGLSAGA
                     MTIVRAVAPLTLFGREAYAVVLGRLAVPQNVAFALSPMLLAAVMSNAGPRATLGLVCA
                     ASVLGFAAMLALAKVGTRREVAQVREEPTP"
BASE COUNT          319 a          697 c          712 g          300 t
ORIGIN      
        1 ggccgcacct cgacctcctg cgccggctcg cacattggct catgaaggag cccggcctcg
       61 aggaggaggc cctgcgcgcg accgtggcag ggcgcgaaat tcgcatcgag cgccagacca
      121 tgggcgaaga ccccggaccc gtcacggtca cgggcccgag cggggcggag cgcagcatcg
      181 ccgtccgtga cgagaagccc ggcctctacg ccgcgcaagt gcagagccgc gagctcgggc
      241 tgcacagcgt ccgctcgggc gacctcgtcg cgttcgtgag tgtcggcccg gccaacccgc
      301 gcgaactcgc cgacgtgttc agcgatacgg agcgcctgcg gtccatcgcc gaggcgaccg
      361 gcggctccgt gcgccgcatc gccggcgacg ccggcgacga cgtgacggtg ccgcgcatcc
      421 aggcggtgcg ctcagggacc cgcttcgcgg gcgcggactg gatcggcgtg cggccgagcg
      481 acagcgccat cgtgcgcggc gtctcggtgt tccccctcgc catcggcctc ctgggcctcg
      541 ccctccttat cggggcgacc ctcgcggcct ggattgccga ggggcgaaat cgggcttaag
      601 cgcaaggcaa accgcggtat aagtcggtca tatcaacact gcccgggcgc ggcggacaga
      661 tgcggactct gcttcaggat ctgcggtatg aattcgagga ccatccattt ctcgcgacgc
      721 ttgaggcggt aggcctcggc gtttggttgc tcaccattgc cgtcggcgcc tacgctcaat
      781 tcgtacttcc gaggggccga ggctctggaa cgtgctactt caccgatgcg ctgatcatcc
      841 tgatcgagtg cagccgcggt ccttgggaag gattgctgaa ctacgcgtgg ttttcgacgt
      901 ggggtgcctt tgtgaccgtc gctttcccac cgctctgggt tccggtgggg gcacctgccc
      961 ttctggctct aacctttgcc ctgggcttcg ttctgcgact catccgactc ctgctgagac
     1021 atgccagctg aagcacggct gcgtccttgt cagggcagct gcggtcaagc cttcggcgtc
     1081 gtgacgagct gggtctgcgt gacgtaggcg acgacacggc cgtcggcgcg ggtgagcttc
     1141 gtctgccaga ccatggtggt gcggccgcga tgcagcggcg tgcactcccc gatgacggta
     1201 tcgcccacgg gcgccgcgcc gatgaagttc gtcttgctct cgaccgtcgt ggtccaggcg
     1261 ccctcgggca ggttcgcgac cgtcgcgatg gcaccgagcg aatcggcgaa ggccatgacg
     1321 gcgccgccgt gcaggacggc ggggcgcgtg cacaggtcgt cgcgcacgac gagctcggcg
     1381 cggacgcgct cgggtgtcgc ctcgagcacg cggatgccga gaaggtcggc gaagggcatc
     1441 ccggcggact gcgtcatggc gtcggctcct cccttacctg cgcgacctcg cgacgcgttc
     1501 caaccttggc cagcgccagc atggccgcga agccgaggac cgaggcagcg cagacaaggc
     1561 cgagcgtggc gcgcggcccc gcgttgctca tcacagccgc caaaagcatc ggcgacaagg
     1621 cgaaagccac gttctgcggc acggcgaggc gtccaagcac gaccgcatag gcctcgcgtc
     1681 cgaacagcgt cagcggcgcc accgcgcgca cgatggtcat ggcgccggcc gagaggccgt
     1741 agccaaccat gaaggccgcc gcgatgccga cggaggtctc ggcgacgagc ggcagcgcca
     1801 cggcgagggg catcagcgcc atggcgacga cgccgacgac gagaatgccg gcccgccccc
     1861 cgaaaacgac ctcgccaatc cgcgccgcga tctgcgacgg cccgatcagg gtgccgacga
     1921 gcacggccgt ggcggccggc aagccgaggc ctttgaggat ctcgatggca tgcagcggga
     1981 gcccccaggt gacgaagccg gagagcgaga acgcgatcgc cgcgagca
//
LOCUS       DASQWN010000232         3498 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_515849, whole genome shotgun sequence.
ACCESSION   DASQWN010000232 DASQWN010000000
VERSION     DASQWN010000232.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 3498)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3498)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3498
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_515849"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(662..1009)
                     /locus_tag="VE686_04410"
     CDS             complement(662..1009)
                     /locus_tag="VE686_04410"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY83728.1"
                     /translation="MHKTRTVCLVLVALATACTALAATDVPRFPKNMRYELARETLVA
                     AGWQPGAPSGARECGRPDMCTADQPEVASCQETGLRQCTAVWRRGETVIDVTTWGMSP
                     PMVERVECRAGCR"
     gene            complement(1018..2220)
                     /gene="nhaA"
                     /locus_tag="VE686_04415"
     CDS             complement(1018..2220)
                     /gene="nhaA"
                     /locus_tag="VE686_04415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018043302.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015385 - sodium:proton antiporter
                     activity [Evidence IEA];
                     GO_process: GO:0006814 - sodium ion transport [Evidence
                     IEA];
                     GO_process: GO:1902600 - proton transmembrane transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter NhaA"
                     /protein_id="HYY83729.1"
                     /translation="MPDQTPTVRRRPASALRALLNSEAGGGLVLMAAAAAALVIANSP
                     LAPAYFGALATYVGGLSILHWINDALMALFFLLVGLEIKREFLDGQLSTWPRRALPGI
                     AAAGGMIAPAIVYVVLNAGTPATLRGWAIPTATDIAFALGVLALLGSRVPVSLKIFLT
                     ALAIIDDLGAVAIIAAFYAADLSLAYLALSGATLAVLVAMNRAGVERIVLYAAFGALL
                     WYFVLRSGVHATLAGVALALTVPLRRSPGRPDDPASPLHVLEHALHPWVAFLVVPIFG
                     FANAGVSLSGMSLGAMLAPVPLGIAAGLFVGKQVGVFTTTWMAVKFGLSDCPQDASWS
                     QVYGVSLLCGVGFTMSLFIGLLAFPTSPELQDQVKVGVLTGSVLSALAGMMVLYLGAP
                     GRRPVEQR"
     gene            complement(2353..2904)
                     /locus_tag="VE686_04420"
     CDS             complement(2353..2904)
                     /locus_tag="VE686_04420"
                     /EC_number="2.1.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF019846.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HYY83730.1"
                     /translation="MHASSCASQAAAAEVPVSLMHGDMRDFDLGQRFALVIVSCNSLA
                     HLTGNDDLLSCFRAVERHLAPGGLLAFDITNPRLRELAGADAPFEGPSTSGAITMSEA
                     LSYDPVHQLRISEWSVAGPSHEAREFAPLVLRQIFPQELPLLLGAAGLELAARYGDFD
                     GNALAGDSLNQVCLARATHAPAS"
     gene            complement(3166..>3498)
                     /locus_tag="VE686_04425"
     CDS             complement(3166..>3498)
                     /locus_tag="VE686_04425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006329795.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1801 domain-containing protein"
                     /protein_id="HYY83731.1"
                     /translation="GVRALIHQADPEVVEEWKWRGTPVWSHAGIICTGETYKTVVKMT
                     FAKGAALEDPSRLFNASLDGNTRRAIDFRESDQINEEALKALIRAAVTLNASSAARRH
                     RPVPASRG"
BASE COUNT          645 a         1160 c         1193 g          500 t
ORIGIN      
        1 ccccgcgcac ggtgtttttt ggtcagccgc tgaggcctat ggcgcctcgg gagaggccag
       61 gtcgctctct cttggaggag agaggcccgc ccgtccgtat ggaccgcgtg ttcctcagcc
      121 gaccctcgcg aacgggcttg cgttcccgcc acgagcaccg atcccgcccc acgtcacgac
      181 gcctcgcgag cgcgcccctc gggtggacgg gacaggcgca atataggact gcgatctttg
      241 gattgtcaag cgttttttct catgcacaag cctctccgca agagagctca gctcgtgcgc
      301 cgcccggcgg gctctctgca gcttcatcca cctcgccacg acggcagcgc cgccgacggc
      361 actcccgtgt cgaccgcggc tcccagcggc gctcgctact gcgcataggc gctcacgagc
      421 agcccgcacc cgagtggcag gaacacgagc acgagagcgg ggaaggtgac cgcaagcccg
      481 cgtcccccag ccacgcgcgg ctgacgccgc gcttcggcca tgcgacgagc agcagaacca
      541 gcgcgatcac cagcgatgac aggccgagtg gcgttttcga ggcccaaggg catccgcaat
      601 ctcctccctg tggaggcgcg aagctctcgg caatccagag ctggttcaac aactttcgtg
      661 atcagcggca gccggctcgg cactcgacgc gctcgaccat cggcgggctc atgccccagg
      721 tggtcacgtc gatcacggtc tctcctctgc gccagacggc ggtgcattgg cgcagacccg
      781 tctcctgaca ggaggcgacc tcgggctggt cggcggtgca catgtcggga cggccgcatt
      841 cgcgcgctcc ggaaggggct ccgggttgcc agccggcagc gacaagcgtc tcacgcgcga
      901 gttcgtagcg catgttcttc ggaaaccgcg ggacatcggt cgccgccagc gccgtgcaag
      961 ccgtcgcaag cgcgacgagc accaggcata ccgtccgtgt tttgtgcatg gggctggtca
     1021 gcgctgctcg acgggacgac gaccaggcgc accgagatag agcaccatca taccggccaa
     1081 tgcggagagg accgaccctg tcaacacgcc gaccttcacc tggtcctgca actccggcga
     1141 ggtcgggaag gcgagcaggc cgatgaacag gctcatggtg aagccgacac cgcagagcag
     1201 cgacacgcca taaacctgcg accacgatgc gtcttgcgga cagtcggaga gaccgaactt
     1261 gacggccatc caggtggttg tgaagacccc gacctgcttg cccacgaaga ggccagccgc
     1321 gatgccgagg ggaacaggcg cgagcatcgc gcccaagctc atgcccgaga gcgacacgcc
     1381 ggcattggcg aagccgaaga tcgggacgac gaggaaggcg acccacggat gaagggcatg
     1441 ctccaggacg tgcagcggcg acgccggatc gtcggggcgg ccgggagacc ggcgcaatgg
     1501 caccgtcaat gcgagcgcca cacccgcgag ggtcgcgtgg acgcccgatc gaagcacgaa
     1561 gtaccacagc agtgcaccga aggcggcgta gagcacgatg cgttccacac cggcccggtt
     1621 catggcgaca agcaccgcca gcgtcgcgcc cgacagcgca agatacgcga gcgaaagatc
     1681 ggcggcgtag aacgcggcaa tgatcgccac cgcgccgagg tcgtcgatga tggcaagcgc
     1741 cgtgaggaag atcttgagcg aaacggggac cctcgacccg aggagcgcga gcaccccgag
     1801 cgcaaaggct atgtcggtgg ccgtcgggat ggcccagccg cgcagcgtcg cgggagtccc
     1861 ggcgttcaga acgacgtaga cgattgcggg cgcgatcatt ccgcccgctg cggcgattcc
     1921 gggcagcgcc cgtcgcggcc aggtcgagag ctggccgtcc aggaactcgc gcttgatctc
     1981 cagcccgacg agcaggaaga agagggccat cagcgcgtcg ttgatccagt gcaggatgct
     2041 gagcccgccg acgtatgtgg ccagcgcgcc gaaatacgcc ggagccaggg gcgagttggc
     2101 gatcacgagc gcggccgcag ccgccgccat gaggacgaga ccgccccccg cttcgctgtt
     2161 cagcagcgca cggagcgcag acgccgggcg gcggcgcaca gtcggagtct ggtcaggcat
     2221 ggtatccaac gttgggggct tcacgatcct tcgaaggccc atgtgatcag cggaacgagc
     2281 ccttcggtca cgacggctgc gagggtgatg gcgagcgcga ccaattgcca gaagcgctcc
     2341 caccacaaga cgctagctcg ctggggcatg cgtggcccgt gcgaggcata cctgattgag
     2401 gctgtccccg gcgagtgcgt tcccgtcgaa gtcgccgtac cgggcggcga gttcgagacc
     2461 cgccgccccc agcaggagag gcagctcctg aggaaagatc tgacggagga cgagcggcgc
     2521 gaactcgcgg gcttcatgcg acggtccagc caccgaccat tccgatatcc ggagttggtg
     2581 caccggatcg taggacagcg cctcgctcat ggtgatcgcg cccgaggtgg atggaccctc
     2641 gaacggcgcg tcggcacccg cgagttcgcg caggcgcggg ttcgtgatgt cgaaggccag
     2701 caagccccct ggagcaagat gtcgctcgac cgcccggaag cacgacagca ggtcgtcgtt
     2761 gccggtgagg tgagcaaggg agttgcagga gacgatcacc agcgcgaagc gctggcctag
     2821 atcgaagtct cgcatgtctc cgtgcatcag cgacaccgga acctctgctg cggcggcttg
     2881 gctcgcgcac gacgaagcat gcatgccgaa ctgtcgagcc cgacgacgtc gtgccgatcc
     2941 tccgcaagcg ggatcgttag gcggccggtg ccacaggcca gctcgagcac cgggccgcca
     3001 gtgcttcgag cgacggaccg gtagaacggc tcgcagggcc cgcgagggac cacgaggtcg
     3061 tagaggtgcg gattgtcgta gagggtgtcg tgtcgcatcg cggcgacatg acagcgatcc
     3121 agtgctcgtt caacacagcc gctcaacagc tcaggcgctg cgagatcaac cccgcgaggc
     3181 cggcacaggc ctgtgacgcc gcgcggcgga ggacgcattc agcgtgacgg cggctcggat
     3241 gagcgctttc aaggcctcct cgttgatctg gtcgctctcg cggaaatcga tcgcgcgccg
     3301 ggtgttgccg tcgaggctgg cgttgaagag gcgtgatggg tcctccagcg cggcgccctt
     3361 ggcgaacgtc atcttcacga cggtcttgta ggtctcgccg gtgcagatga tcccggcgtg
     3421 ggaccacacc ggcgtcccgc gccacttcca ttcctcgacg acttccgggt cggcctggtg
     3481 gatcagcgcc cgcacccc
//
LOCUS       DASQWN010000233         3611 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1131265, whole genome shotgun sequence.
ACCESSION   DASQWN010000233 DASQWN010000000
VERSION     DASQWN010000233.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 3611)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3611)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3611
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1131265"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..213
                     /locus_tag="VE686_04430"
     CDS             <1..213
                     /locus_tag="VE686_04430"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY83732.1"
                     /translation="IKATVSEQRKLAAEADAAALADLKAKGMQFDELSPQAAAELRKA
                     TAGIVEEVRKRATAEVVDRVVAEARK"
     gene            216..743
                     /locus_tag="VE686_04435"
     CDS             216..743
                     /locus_tag="VE686_04435"
                     /inference="COORDINATES: protein motif:HMM:NF016200.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TRAP transporter small permease"
                     /protein_id="HYY83733.1"
                     /translation="MPEALAEVSPPARFTLGRFLDGIDWAVAKLVIASMTVMLVVVAG
                     QVFFRYALNLSVDWAEEISRLSFVWSVFLAIPLGVKRGAHVGISLLTDRFPAALQDKL
                     FRAMNLLAIVLMALVAYEAVVLTIDQWDEPMSTLDTSVGLFMLPLAVGAAHALLHLVN
                     GVFVGPPVKQAVVTE"
     gene            740..2020
                     /locus_tag="VE686_04440"
     CDS             740..2020
                     /locus_tag="VE686_04440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018067345.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0031317 - tripartite ATP-independent
                     periplasmic transporter complex [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0008643 - carbohydrate transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TRAP transporter large permease"
                     /protein_id="HYY83734.1"
                     /translation="MSAVILGTFLIVSLLGMPLAFALGFSALAALSMSGVDFNMLPQR
                     MMHSVNAFPLMAIPLFMLAGEFMIRGGLAERLIELANAFIGRVAGGLAQVTMLAGAGM
                     AAVSGAAVADASALATVLVRQLSKVYGVGFSAAIVAAAANLGPVIPPSNAMIVYAYMA
                     GSSVSVAGLFLAGVVPGIVFTIGMMVIIRIIAKKRGYPLTGEPISLRHIGREMARSWM
                     ILLMPIIVIGGIVIGAFTATEGAAIAAVYALVVGLFVTRKLTLSDIPDCMLQAAITTA
                     VVGALIAFASAVTFLVTVDLLPARLSVAIREFTSDPLMFNILVAAMLFVVGMFLESNA
                     AYIMLVPIFHPIALSYGLDPLHFGFLFVFNLVLGMLTPPVGVVLFVVCGIAKISMGEM
                     MRHLWPFVAFGFGLLFLCMFYPPLVTGLPRVLGY"
     gene            2072..2956
                     /locus_tag="VE686_04445"
     CDS             2072..2956
                     /locus_tag="VE686_04445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018272029.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HYY83735.1"
                     /translation="MAFATTDDGVRLYFEETGSGSLVIFVHEFAGDHRSWEPQMRYFG
                     KRYRCVAFNARGYPPSDVPENVASYSQARAADDIRAIVDHLGEPGAHVVGLSMGGFAT
                     LHYGFRHGDAALSLCIGGCGYGAEPTQRERFRAEADTIAEAITTAGMEAFADRYAFGP
                     TRVQFQNKDPRGFAEFQRGLAEHSAVGSANTQRGVQRERPSLYDLTDEMKRLTVPTMI
                     ITGDEDWPCLMPGILMKQTIPTAALAVIPNSGHGINLEEPEQFNRIVGDFLAQVESGR
                     WPVRDPRAVSASITGMKN"
     gene            complement(3349..3424)
                     /locus_tag="VE686_04450"
     tRNA            complement(3349..3424)
                     /locus_tag="VE686_04450"
                     /product="tRNA-Lys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(3389..3391),aa:Lys,seq:ctt)
BASE COUNT          571 a         1205 c         1123 g          712 t
ORIGIN      
        1 ataaaggcga ccgtctcaga gcagcggaag cttgctgccg aggcagacgc cgcagctctt
       61 gccgatctca aggccaaagg catgcagttt gacgagctct ctccgcaggc ggccgcggag
      121 ctgcggaaag cgactgccgg cattgtcgag gaggtcagga aacgtgcgac ggccgaggta
      181 gtggaccgcg ttgtcgccga ggcccgcaag tagccatgcc cgaggcgttg gccgaggtct
      241 cgccccctgc acggttcact ctcgggcggt ttctcgacgg gattgattgg gccgtcgcca
      301 agctcgtgat tgcctcgatg accgtcatgc tggtcgtcgt ggcggggcag gtcttcttcc
      361 gctacgcgct taatctctcc gtcgactggg cggaggagat ctctcggctg tcgttcgtct
      421 ggtccgtgtt ccttgcaatt ccgctcgggg tcaaacgcgg cgcccacgtc ggaatctcat
      481 tgttgacgga ccgtttcccg gcagccctgc aggacaagct cttccgggcc atgaacctgc
      541 tcgcgatcgt cctcatggca ctggtcgcat acgaggcagt ggtactcacg atcgaccagt
      601 gggatgagcc gatgtccacg ctcgacacga gcgtcggcct gttcatgttg ccgctcgccg
      661 tcggcgcagc gcacgccctc ctccatctcg tcaacggcgt cttcgtcggg ccgccggtca
      721 agcaggccgt ggtgacggaa tgagcgcggt tatcctcggc accttcctca tcgtctcgct
      781 tctcgggatg ccgctcgcct tcgcgctcgg gttcagcgcg cttgcggcac tgtcgatgag
      841 cggcgtcgac ttcaacatgc tgccccaacg catgatgcac tcggtcaacg ccttcccgct
      901 gatggcaatt ccgctgttta tgcttgcggg cgagttcatg atccgcggtg gcctggccga
      961 gcgtctcatc gaactcgcca atgcgttcat cggacgggtc gcggggggac tcgcgcaggt
     1021 gacgatgctc gcaggcgccg gcatggcggc tgtgtctgga gccgcagttg ccgatgcgag
     1081 cgcgctcgcg acggtgctcg tccggcagct ctcgaaagtt tacggggtcg gcttctccgc
     1141 cgcgatcgtt gcggccgccg ccaacctcgg acccgtgatc ccgccgtcga acgccatgat
     1201 cgtgtatgcc tacatggcgg gaagctccgt gtcggtcgct ggccttttcc ttgccggcgt
     1261 agtccccggt atcgtcttca ccattgggat gatggtgatt atccgcatca tcgccaagaa
     1321 gcgcggctat cccctgaccg gcgagcccat cagccttcgc cacattggcc gcgagatggc
     1381 ccgctcgtgg atgatcctcc tcatgccgat catcgtcatc ggcgggatcg tcatcggtgc
     1441 ctttaccgca acggaagggg cggccatcgc agccgtctac gccctcgtcg ttggcctgtt
     1501 cgtcacccgc aagctcacac tctcggacat cccggactgc atgctccagg cggcgatcac
     1561 taccgcggtg gtcggcgcgc tcattgcctt cgcgtccgcc gtgactttcc tcgtcaccgt
     1621 cgacctcctg ccggcgcgcc tctccgtcgc catccgcgag ttcacgagcg acccgctcat
     1681 gttcaatatc ctcgtcgccg cgatgctgtt cgtggtcggg atgttcctcg agtcgaacgc
     1741 ggcgtacatc atgctcgtgc cgatcttcca tccgatcgcc ctgtcgtacg gtctcgatcc
     1801 tctccacttc gggttcctgt tcgttttcaa cctcgtgctc ggcatgctga cgccgcccgt
     1861 cggggtcgtg ctgttcgtcg tctgcgggat cgccaagatc tccatgggcg agatgatgcg
     1921 tcacctttgg cccttcgtgg cgttcggctt cggcctgctc ttcttgtgca tgttctatcc
     1981 gcccctcgtg accggcttgc cacgggtgct cggctactga gcaccggccc tgtccggatc
     2041 gaggaacgcg cgacagcgat ggtgagggac aatggcattc gcaacgactg acgacggggt
     2101 gcgcctgtat ttcgaggaga cgggctccgg aagcctcgtc atcttcgtcc atgagttcgc
     2161 gggcgaccac cgcagctggg aaccgcagat gcggtacttc ggcaagcggt accggtgcgt
     2221 tgccttcaac gcccgcggct acccgccctc cgacgtgccg gagaacgtcg cctcctactc
     2281 gcaggcgcgt gctgccgacg acatccgcgc catcgtcgac caccttgggg agcctggggc
     2341 gcatgtcgta ggcctgtcca tgggcgggtt cgccaccctg cactacggct tccgtcatgg
     2401 cgacgccgcg ctttccctct gcatcggcgg ctgtggctac ggcgccgaac cgacgcagcg
     2461 cgagcgcttt cgtgccgaag ccgataccat cgccgaggca atcaccactg ccggcatgga
     2521 ggctttcgca gaccgctacg ccttcggtcc gacgcgcgtg cagttccaga acaaggaccc
     2581 gcgtggcttt gcagagttcc agcgcggcct ggccgagcat tccgctgtcg gttccgccaa
     2641 tacgcagcgc ggcgtgcagc gcgagcggcc gtcgctctat gacctcaccg atgagatgaa
     2701 gcggctgacc gtgccgacca tgatcatcac gggcgacgag gactggccct gtcttatgcc
     2761 cggtatcttg atgaagcaga ccataccgac agcagcgctc gccgtgatcc ccaactcggg
     2821 acacggaatc aatctcgagg agccggagca gttcaaccgc attgtcggag acttcctggc
     2881 tcaggttgag agtggccgct ggcccgtccg cgacccccgc gccgtcagcg cctcgattac
     2941 cggtatgaag aactgagctc gcgcgagcta gtctttgctc ctagggcgcc ctagctcggc
     3001 tacagcacgc cggggtacga agacccgagt gcccggtgaa ccactccggc cggtcgaaac
     3061 aaaaaccccg gcccgcaggg gtctcgaagc tgcggaaccg gggtcgagaa gcgcggccta
     3121 gttcttcggg ggaaggatgg cgcgctcctc tcggccagga tagcccgcgt agcggaaatc
     3181 cggacagtca caaccctgcg atcaagcagg agaacactcc aagagcgtgc acggccgcgt
     3241 tatcacttgt ggttgcatct cttgagctga gccgtcgtct ctcgatgcat tcagatgcat
     3301 ccaaagcccg ctccaacgac tccggtgggt ctgttttctg gaaaacattg gtgggtgtgc
     3361 aaggattcga accttggacc cgctgattaa gagtcagctg ctctaccaac tgagctacac
     3421 acccggtcgc gtggccgcga acgccggccg cttagggccg gggagcggtc cgcttagcaa
     3481 acggtcaagg cgctgtccac cacggcggcc ggcaaagcgg cagatagttc gcccgccgtc
     3541 cacctcggtc gaaaaacgcc gcgccgcggc atcgacggcg acgcgaccga ggggagcggc
     3601 cgcgccgtcc g
//
LOCUS       DASQWN010000234         4543 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_41311, whole genome shotgun sequence.
ACCESSION   DASQWN010000234 DASQWN010000000
VERSION     DASQWN010000234.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 4543)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4543)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4543
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_41311"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..500)
                     /locus_tag="VE686_04455"
     CDS             complement(<1..500)
                     /locus_tag="VE686_04455"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY83736.1"
                     /translation="MLALAALAAEGRVRAFYDDARATLATPVGCATLAFMGWACASIL
                     WSETPATSLQAFVEFFLTLGAAAGLALLLPGRVSRHVVWIAAGAVALACTSMLFELAT
                     GMAVRRAIGVRIASYIFNRPVLTTVILLAPLMLWLDGRRKGRVAQILLMVLVAVTAAI
                     SESGSAV"
     gene            complement(671..1192)
                     /locus_tag="VE686_04460"
     CDS             complement(671..1192)
                     /locus_tag="VE686_04460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007559776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2059 domain-containing protein"
                     /protein_id="HYY83737.1"
                     /translation="MNRVLSALAVAAVVVLSQGPAIGQQPAASAAQAQPSASHLAAAR
                     DVVNLSGMARSFDAVLPRFGEAIRKNAVTRPDLTKDLDDVLEKLKPELELQKQQMVTA
                     SARIFAGSMTEQELKDTATFFKTPSGQKYVLSQPAVLDEMVRQMEVWTRDVSEYVMVR
                     VRAEMGKRGHAMQ"
     gene            complement(1229..1924)
                     /gene="rpiA"
                     /locus_tag="VE686_04465"
     CDS             complement(1229..1924)
                     /gene="rpiA"
                     /locus_tag="VE686_04465"
                     /EC_number="5.3.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020092105.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004751 - ribose-5-phosphate isomerase
                     activity [Evidence IEA];
                     GO_process: GO:0009052 - pentose-phosphate shunt,
                     non-oxidative branch [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribose-5-phosphate isomerase RpiA"
                     /protein_id="HYY83738.1"
                     /translation="MTADDLKRAAAERALSAVGDGMRLGLGTGSTAAHFVTLLGARVR
                     AGLNVVGVPTSERTRAQAAGEGIPLTTLEDTPELDLTVDGADEIDDALRLIKGGGGAL
                     LREKIVAAASRRMIVIADASKRVKRLGRFPLPIEVVPFGLGATGRAVATAFERLGCVG
                     ELRLRGSDEAPFVTDGGHYILDAHLNAIADPNGLAAALNAIPGVVEHGLFIGLATSAI
                     LSTEDGIVVLGQL"
     gene            complement(2069..2533)
                     /locus_tag="VE686_04470"
     CDS             complement(2069..2533)
                     /locus_tag="VE686_04470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018045234.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY83739.1"
                     /translation="MRRTGRSIALLGALVAGIATSGPVTAASFDFVPAPQTDLNRIYR
                     IDRVTGAIASCQYGLQEGTVGATLCFGPGEGAGPQTPGEYGLVASRHEREGGVFRVNY
                     RTGDMSVCYVYEEKVVCTPQTGPSVSGAAPGGAAISGAGGTPTSGRPGQTRP"
     gene            2631..3323
                     /locus_tag="VE686_04475"
     CDS             2631..3323
                     /locus_tag="VE686_04475"
                     /EC_number="3.1.3.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012253735.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016791 - phosphatase activity [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA];
                     GO_process: GO:0016311 - dephosphorylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HYY83740.1"
                     /translation="MILSSSPTAVFDLDGTLADTAPDLIATLNVILDGEGVPRLPAAQ
                     ARELIGLGGRALIVRGLEAASREVTPARLEALYRKFIVHYGENLCVETVLFPGVETAL
                     DQLEEAGFRLAVCTNKIEKHSVRLLEALGIGKRFTAVCGRDSFAYCKPDPRHLTLTVE
                     KAGGDPRHAVMIGDSRTDVATAKAAETPVIAVSFGYSEISVQELGADRVVGHFDELVA
                     AVHDCIAVAEPA"
     gene            complement(3373..3447)
                     /locus_tag="VE686_04480"
     tRNA            complement(3373..3447)
                     /locus_tag="VE686_04480"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(3413..3415),aa:Val,seq:cac)
     gene            3634..4233
                     /locus_tag="VE686_04485"
     CDS             3634..4233
                     /locus_tag="VE686_04485"
                     /EC_number="2.3.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012320832.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016746 - acyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0071972 - peptidoglycan L,D-transpeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0018104 - peptidoglycan-protein
                     cross-linking [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="L,D-transpeptidase"
                     /protein_id="HYY83741.1"
                     /translation="MRRLVLALAAVAAVAAAGPAVAAGYYEIDPLTREPLQPYAAQQL
                     DQGFRPQASAIPRERVGAPGNYAPGTIVINTSERRLYFINGDGTAIRYGVGVGRPGFT
                     WAGSRAITMKREWPDWRPPAQMLKRRPDLPRHMKGGLDNPLGARAMYLGGSLYRIHGS
                     NEPESIGQAVSSGCIRMTNDDVMGLYERTRVGTRVVVQR"
     gene            complement(4285..>4543)
                     /locus_tag="VE686_04490"
     CDS             complement(4285..>4543)
                     /locus_tag="VE686_04490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020176387.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF971 domain-containing protein"
                     /protein_id="HYY83742.1"
                     /translation="PSAEVQGHSPSERRTVPGKRDVGIIGVQPVGTYAVKLVFDDMHD
                     TGIYGWDYLHELGSRHDERWANYLAELDAKGLSRDPPARRS"
BASE COUNT          719 a         1575 c         1532 g          717 t
ORIGIN      
        1 acggccgatc cgctctccga tatcgctgcg gtgacggcga caagcaccat cagcaggatt
       61 tgcgcgaccc gacctttccg tcgcccgtct agccagagca ttagaggtgc caaaaggatg
      121 acggtcgtca gcaccgggcg attgaagatg tagcttgcaa tccgcacacc gatggcccgc
      181 cgcaccgcca tgccggtggc gagctcgaag agcatgctcg tgcaggcgag ggcgacggcc
      241 cccgccgcga tccagacgac gtgccgcgac acgcggcccg gcaggaggag cgcaagcccc
      301 gcggccgcgc ccagtgtgag gaagaactcg acgaaagcct ggagcgaggt cgccggtgtt
      361 tcgctccata agatggaggc gcaggcccag cccataaagg ccagcgtggc gcaaccgacg
      421 ggggtcgcca gcgtggcgcg tgcatcgtcg tagaatgcgc gcacccggcc ctcggccgcc
      481 agcgccgcca gcgccagcaa ggtcgcgagc gtcaggacga gcggactcga gcgatgggca
      541 atcgccatag cgagcggcat cgccgcaagc accaccgcgc tcgcttccca taagcgagcg
      601 ctggtgcggc ttacgtcccg cgacacggcg ccgtgggcgg ccatcatcgt tatcggcgcg
      661 gccgggcgcc ctactgcatg gcgtggccgc gcttgcccat ctcggcgcgt acgcggacca
      721 tgacgtactc cgagacgtcc cgcgtccaca cttccatttg gcgcaccatc tcgtcgagaa
      781 ccgccggctg cgacaggacg tacttctgtc ccgagggcgt tttgaagaag gtcgcggtgt
      841 ctttgagctc ctgctcggtc atgctgccgg cgaagatgcg cgcgctcgcg gtgaccatct
      901 gctgcttctg cagctcgagc tcgggtttca gcttctcgag cacgtcgtcc agatccttgg
      961 tgagatcggg ccgggtcacg gcgttcttgc ggatggcttc gccgaaccgc ggcaggacgg
     1021 catcgaatga ccgggccatg cccgagaggt tcaccacgtc gcgggcggcg gccaggtggc
     1081 ttgcgctcgg ctgcgcctga gccgcagagg cggccggctg ctgtccgatc gcgggtcctt
     1141 ggctaagcac gacgacggcc gcgacggcga gagcggagag aacgcggttc atgagacaag
     1201 gctccgatgg tggcttgagt cgaggtcttc agagttggcc gagtaccacg atcccgtcct
     1261 cagtcgacag gatcgcgctt gtcgcaaggc cgatgaacag cccgtgctcg accacgcccg
     1321 gaatggcgtt gagcgcggcg gccagcccgt tcgggtcggc gatggcgttg agatgcgcgt
     1381 caagaatgta gtgccccccg tccgtgacga aaggggcttc gtcgctccct ctcagccgca
     1441 actcgccgac gcagccgagc cgctcgaagg ccgtcgcgac ggcgcgtccg gtagcgccga
     1501 ggccgaacgg cacgacctcg atgggcagcg ggaagcggcc aagccgcttc acgcgttttg
     1561 acgcatcggc gatgacgatc atgcgcctgc tggcggcggc cacgatcttc tcacgcagga
     1621 gcgcgccgcc gccgcccttg atgaggcgga gcgcgtcgtc gatttcgtcg gcaccatcga
     1681 cggtgaggtc gagctccggg gtgtcctcga gggtggtcag gggaatgccc tcacccgctg
     1741 cttgggcgcg cgtgcgttcc gaggtgggca ccccaaccac gttcaggccg gcgcgcacgc
     1801 gggcgccgag aagggtcaca aaatgcgccg ccgtcgagcc cgtgcccagg ccgaggcgca
     1861 tgccatcgcc gacggcggaa agcgcccgct cggccgccgc acgcttgagg tcgtccgcgg
     1921 tcaccgcggg tgtccggccg cgctgcgacg gtggcagcaa gaagcgggtt gcttgagcgt
     1981 catgccatgc ctcgcgagac cgccgcgcgg ctcgcacgac gcctgtagca cgcgacgcct
     2041 gccgcgggaa cgcgccgacc gagtccgttt acggccgggt ctgtccagga cggccgctcg
     2101 ttggcgttcc gccagctccc gagatggccg cgccgcccgg tgcggcgccg ctcacggagg
     2161 ggcccgtttg cggggtgcaa acgaccttct cctcgtagac gtagcagacg ctcatgtcgc
     2221 cggtgcggta gttgacgcgg aacacgccgc cttcgcgctc gtgtcgggag gccacgagac
     2281 cgtattcgcc cggcgtctgc ggtccggcgc cctcccccgg cccaaagcac agggtcgcgc
     2341 cgacggtgcc ctcctgcagg ccatattggc aggatgcgat cgcgcccgtc acccgatcga
     2401 tgcggtagat ccgattgagg tccgtctgcg gcgccggcac gaagtcgaac gacgcggctg
     2461 tgacgggccc gcttgtcgcg atcccggcca caagcgcacc gaggagcgcg atcgaccgac
     2521 ctgtgcgccg catcctaggc tctccttaac ctgaatcgaa tcacaacacg gagaatagca
     2581 ttgcgcgcct ccttgctgct gaggcgttcg gacgctagcg aaggccgcgc atgatcctat
     2641 cgtcgtcacc cacagccgtt ttcgatctcg acggcaccct cgccgacacg gcacccgacc
     2701 tgatcgcgac gttgaacgtg atcctggacg gggaaggtgt gccccggctg cctgccgcgc
     2761 aggcgcgcga gctcatcggc ctcggcggcc gggccctgat cgtgcgcggt ctcgaggcgg
     2821 cttcgcgcga ggtcacgccg gcgaggctcg aagcccttta tcgcaagttc atcgtccatt
     2881 acggcgagaa cctctgcgtt gagacagtcc tgttcccggg cgtcgagacc gcgctcgatc
     2941 agctggaaga ggctgggttc cggctcgcgg tgtgcaccaa caagatcgag aagcattcgg
     3001 ttcgccttct tgaggcgctc ggaatcggca agcgcttcac agccgtgtgt ggccgggaca
     3061 gctttgccta ctgcaagccc gacccgcgcc atctcacgct caccgtcgag aaggccggcg
     3121 gcgatcctag gcacgccgtc atgatcggcg actcccgcac cgacgtggcg accgccaagg
     3181 cggccgagac tcccgtgatc gcggtcagct tcggctacag cgagatctct gtgcaggagc
     3241 tcggcgccga tcgtgtcgtc ggccacttcg acgagctcgt cgcggccgtg cacgactgca
     3301 tcgcggtcgc cgagcccgcc tgaggctccg cggcaagctt cacaggaatg tgatctcggc
     3361 atctgaggtc gatggtgggc gcgacaggga ttgaacctgt gacccttcgc gtgtgaagcg
     3421 aatgctctcc cgctgagcta cgcgccctct gggccgcatg tactggcccc gggcgtgcgg
     3481 cgtcaacccg aacccttgcc ccgcctccag cggctaaggg tccggcaact ttgctgtgca
     3541 caaataacgc ggcgcggcaa cgcgcagggc cttgtcttgg gatcgccaag ctgggctgtt
     3601 gcattgtaag aagcacaaca atcgagggca cccatgcgcc gtcttgttct agccctcgcc
     3661 gcggtggcgg cagttgcggc cgccggcccc gccgtcgccg ccggctacta cgaaatcgat
     3721 cccctcaccc gcgagccgct gcagccctat gcggcacagc agctcgacca aggcttccgc
     3781 ccgcaggcct ccgcgattcc gcgcgagcgg gtgggggcgc cggggaatta cgcgccaggc
     3841 accatcgtca tcaacacgag cgagcggcgg ctgtatttca tcaacggcga cgggacggcg
     3901 atccgctacg gcgtcggcgt cgggcggccg ggcttcacct gggccggcag ccgcgccatc
     3961 accatgaagc gcgagtggcc ggactggcgt ccgccggcgc agatgctgaa gcgccgcccg
     4021 gacctgccgc gccacatgaa gggcggcctc gacaacccgc ttggcgcccg cgccatgtac
     4081 ctcggcggct ccctctaccg catccacggc tcgaacgagc ccgagagcat cggccaggcc
     4141 gtctcgtccg gctgcatccg catgaccaac gacgacgtca tgggtctcta cgagcgcacc
     4201 cgcgtcggca cccgggtggt cgtccagcgc tgactccctc ccctcgagag agatcaaaaa
     4261 ggccggccct cgcgccggcc tttttcatga tcgccgcgcc ggcgggtccc gcgacaggcc
     4321 cttggcgtcg agctcggcga ggtagttggc ccagcgctcg tcgtgccggc tgcccagctc
     4381 gtgcaggtag tcccagccgt agatgccggt gtcatgcatg tcgtcaaaga cgagcttgac
     4441 cgcgtaggtg ccgaccggct gcactccgat gatgcctacg tcgcgcttgc ccggcacggt
     4501 tctgcgctcg gaggggctgt gcccctggac ctcggccgag gga
//
LOCUS       DASQWN010000235         2397 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_735505, whole genome shotgun sequence.
ACCESSION   DASQWN010000235 DASQWN010000000
VERSION     DASQWN010000235.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2397)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2397)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2397
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_735505"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..312
                     /locus_tag="VE686_04495"
     CDS             <1..312
                     /locus_tag="VE686_04495"
                     /EC_number="3.4.21.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012334170.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004252 - serine-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="trypsin-like serine protease"
                     /protein_id="HYY83743.1"
                     /translation="VADTERLALSSGAGACRGDSGGPVLRGGPGGYQLLGIVSWSSGA
                     FNGRNVSACGGLTAVTPVAEHAGWISARASDLSRGSPAQAIYTSSAGRNAADWIIDKN
                     R"
     gene            complement(439..831)
                     /locus_tag="VE686_04500"
     CDS             complement(439..831)
                     /locus_tag="VE686_04500"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY83744.1"
                     /translation="MDSTERWEVALKTAEFKFPNAIAFISDVNGGTAPYPTWGALVQS
                     TPSCISVACTPGSEGPTTVTVGFGDGVDPGGTPAFQGTLDTPSGTLVVTTVDRRIVVS
                     FEVARTTTRVRIWVNDPSVPDRVVIGVQ"
     gene            complement(1799..>2397)
                     /locus_tag="VE686_04505"
     CDS             complement(1799..>2397)
                     /locus_tag="VE686_04505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017484830.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0044423 - virion component [Evidence
                     IEA];
                     GO_function: GO:0005198 - structural molecule activity
                     [Evidence IEA];
                     GO_process: GO:0019068 - virion assembly [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="phage major capsid protein"
                     /protein_id="HYY83745.1"
                     /translation="VVDVDQWIADEVETAFAEQEGAAFVTGDGVNKPKGFLAEDTVDN
                     GAWTWGKLGFVPTGAAGAFPGANPSDVLISLIYALKAGYRQNASFVVNRKVQGAIRKF
                     KDGQGNYLWQPPASAGQPATLMGFPVVEAEDMPDMAANAMALAFGDFRRGYLVVDRAG
                     VRVLRDPYSAKPYVLFYTTKRVGGGIQDYDAIKLLKFA"
BASE COUNT          352 a          823 c          820 g          402 t
ORIGIN      
        1 gtcgccgaca ccgagcgcct ggcgctttcg agcggcgccg gcgcgtgccg cggcgactcg
       61 ggcgggccgg tcctccgcgg tggtcccggc ggctaccagc tcctgggcat cgtcagctgg
      121 tcgtcgggcg ccttcaacgg ccgcaacgtc tccgcctgcg gcggcctcac cgccgtgacg
      181 cccgtcgccg agcacgcggg ctggatctcc gcccgcgcga gcgacttgag ccgcggctcg
      241 ccggcccagg ccatctacac ctcgagcgcc ggccgcaacg cggccgactg gatcatcgac
      301 aagaaccggt aggcggactc atcccacgcc gacaattacc ttgtcgggct cgacagttca
      361 tccacccaga tcctcacgcg cgtcttcgtg tcggaacact ggtctccagc acgttgtgcc
      421 gctcgacggg aatgctcgct actggacgcc gatgaccacg cggtcgggaa cagatggatc
      481 gttgacccat attcggaccc tcgtcgtggt acgtgcgacc tcgaagctca cgacgatgcg
      541 gcgatccacc gtggtgacga cgagcgtgcc acttggggtg tcgagcgtac cctgaaaagc
      601 gggggttccc ccagggtcga caccgtctcc gaaaccgacg gtgacggtcg tgggcccctc
      661 cgagccgggc gtacacgcga cggaaatgca tgatggtgtc gattggacaa gcgcccccca
      721 cgttgggtac ggggcggtcc ctccattcac gtcggagatg aaggcgattg cgttcgggaa
      781 cttgaactca gccgtcttca gcgcgacctc ccaccgttct gtcgaatcca tcccccccgg
      841 aaatacacta caggccacgc actgcggaaa aagccgctgc tggcgattga gcggattgta
      901 accgctcggc ggctgatggt caggcacaaa gtttccacgc tggtgccggg gtcgatcgtt
      961 ccgcaagtat gacagcccgt ttcgccgccg atgcggttga ggtcgcgtcg ctcggcggct
     1021 ttgaagtctt gctctggccc gcgtgcgggg atcgattcag cggcgaagcg gcccggcccg
     1081 atcccggcgc gctgcaactc gagaagacaa gcctgggcct cccgagcttc accttccaca
     1141 cccctgattt ggccctcgac attctgggcg agaaacgggg tgggccgcca atccggggcg
     1201 cgctccctca ccttttggac agtgtcgcgc gcgcgggcct cggcaacggc aagtctcgcg
     1261 ccttgcccgg gcgtgagagc atgccagcga ccatttatca gcgcacgggt gggcgcgcgg
     1321 ttgcgcccgc ttgcccattg cgcactgtcg ataaggtcgg gcgagatccc gctgtcccct
     1381 cgtccactgc ccgccatggg ggttgccggc cgggacgcgg ggctggtcgg cgcgatactt
     1441 cagcgcgagc gcgcgcttta gctcgataag cgcgatatcg acgccgaggc tcgcgagctc
     1501 tgcccgtatc tgggcgagcg cgcgctggcg tgccggcgcg gcgagatgcg catcgtgcgc
     1561 ctcgcgctcg cgcccgagtt gttcgtgccc ggatgggtgc atgggggggt attccggtgc
     1621 ggtgagggcc atccccgccc gcgcgggccg cgagggggag tgagtcgcgc ctccaggacg
     1681 cgacgggggc tgggcggaag ccctgatcct ctcgtcgaag cacggtggtt ccgccccacc
     1741 cgggcgggca ctgacgcgcc cgcctccgcc ctcctctcgg ggggagggat tcgcgccttt
     1801 acgcgaactt caggagcttg atcgcgtcgt agtcctggat gccgccgccg acgcgcttcg
     1861 tcgtgtagaa cagcacgtac ggcttggcgg agtacgggtc gcgcaggacg cgcacgcccg
     1921 ctcggtcgac caccaggtag ccgcgtcgga aatcgccgaa ggcgagcgcc atggcattgg
     1981 cggccatgtc gggcatgtcc tcggcctcga ccaccgggaa gcccatcagc gtcgccggct
     2041 ggccggcgct ggcgggcggc tgccagaggt agttgccctg cccatccttg aacttgcgga
     2101 tcgcgccctg aaccttgcgg ttcacgacga agctcgcgtt ctgccggtag ccggctttca
     2161 gcgcgtagat gagtgagatc agcacgtcgg aggggttggc gcccgggaac gcgccggcgg
     2221 cgccggtcgg gacgaagccg agcttgcccc acgtccaggc gccattgtcg accgtatcct
     2281 cggcgaggaa gcccttcggc ttgttgacgc cgtcgccggt cacgaaggcg gcgccctcct
     2341 gctccgcgaa ggcggtctcg acctcgtcgg cgatccactg gtcgacgtcg accacgg
//
LOCUS       DASQWN010000236         2764 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1231220, whole genome shotgun sequence.
ACCESSION   DASQWN010000236 DASQWN010000000
VERSION     DASQWN010000236.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2764)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2764)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2764
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1231220"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            96..1190
                     /locus_tag="VE686_04510"
     CDS             96..1190
                     /locus_tag="VE686_04510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018458267.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mandelate racemase/muconate lactonizing enzyme
                     family protein"
                     /protein_id="HYY83746.1"
                     /translation="MPALRSIEPGFYRIPLPQVLTDSTHGEMSAFELNTVRLRDADGA
                     EGVGYTYTVGRNGAAVDAVLSRELTEIMAGEEADDIERLWLKAWWALHYGGRGGPTVL
                     AISAFDMALWDLKARRANLPLWNLLGGYDRKVPCYAGGIDLDLPLEALLRQTDDNLAK
                     GFRAIKMKVGRKNLFEDVERVAAMREHLGAGFPLMVDANMKWGIDEAIRAARALQPHD
                     LTWLEEPTIPDDPAGHARIVREGGLPIAAGENLRSLWEFKAYIAAGAVTYPEPDVTNC
                     GGVTPFMKIARLAEAFNLPVTSHGAHDVTVHLLAACPNRSFLEAHGFGLDRYIAEPLK
                     IEEGVAIAPNRPGHGITFDWNGLETVAARR"
     gene            complement(1222..2130)
                     /locus_tag="VE686_04515"
     CDS             complement(1222..2130)
                     /locus_tag="VE686_04515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016847846.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HYY83747.1"
                     /translation="MTLQAPASRGRTAAAAGIGMMVLGIFVFSVNDVMGKWLVATYSV
                     GEILLIRSVAALAVLAPLIWRTGLAAFRFAPHPWLQLARVVLGSVEVAFFYWAVVYLP
                     LADVMTYYLAGPIYVAALAAPLLGERLDRWAVGAIALGFVGVLIALNPSASSLSWPAL
                     IAVAGSVAFAFLMIVTRKLGGTNGVVLVTTQTVGALILGAVLTPFGSTVPTARDFALM
                     ALLGVVALGAHACVNRALQLAPASVVTPYQYTLIVWAVVFGWLVFGDVPHPTVLVGAA
                     VIVAAGLALFVVEQRRASAQSEASGP"
     gene            complement(2157..>2764)
                     /locus_tag="VE686_04520"
     CDS             complement(2157..>2764)
                     /locus_tag="VE686_04520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011089838.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0008643 - carbohydrate transport [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="carbohydrate ABC transporter permease"
                     /protein_id="HYY83748.1"
                     /translation="IAVASGVITLLIATGAAFAISRLKVRGGRAVMNLALFTYFIPAA
                     FLAVPMYKTMGVYGLLNSQWALIWAMVTIASPYAIWVLKQASDKLPIELDEAAVMDGA
                     TPMQLFRLVYLPLMMPSLVAVGTYALLLAWNEYLYAFLLLSRETDITLPVALGNFLAA
                     DDSPWELLMTTGLIYALPPAAIYFVFKRYMVAGLTAGAVKS"
BASE COUNT          504 a          935 c          965 g          360 t
ORIGIN      
        1 cgaagcggaa cttccgcctc gccgaagcgg ggtggcgcgc gcggttttcg tgataggagg
       61 gcggcaccta ccccctccag gagagcccgc cgcgcatgcc cgcccttcgc tcgatcgagc
      121 ccggcttcta ccgcatcccg ctgccgcagg tcctgaccga ctcgacccat ggcgagatga
      181 gcgccttcga gctcaacacc gtgcgcctgc gcgacgcgga cggggccgag ggcgtcggct
      241 acacctacac ggtcgggcgc aacggcgccg ccgtcgacgc ggtgctctcc cgagaactga
      301 cggagatcat ggcaggcgag gaggccgacg atatcgagcg gctgtggctc aaggcctggt
      361 gggcgctgca ctacggcggc cgcggcgggc cgacggtgct cgccatctcg gctttcgaca
      421 tggcgctgtg ggacctcaag gcgcgtcgcg ccaacctgcc tctgtggaac ctgctcggcg
      481 gctacgatcg caaggtgccg tgttatgccg gcggcatcga tctcgacctg ccgctcgagg
      541 ccctcctgcg ccagaccgac gacaacttgg ccaaaggctt tcgcgcgatc aagatgaagg
      601 tcgggcgcaa gaacctgttc gaggacgtcg agcgcgtcgc cgccatgcgc gagcatttgg
      661 gcgcaggctt cccgctcatg gtcgacgcca acatgaagtg gggcatcgac gaggccattc
      721 gcgccgcccg cgccctgcag ccgcacgatc tcacctggct cgaggagccg accatccccg
      781 acgaccccgc cgggcacgcg cgcatcgtgc gcgaaggcgg gcttccgatc gcagccggcg
      841 agaacctgcg cagcttatgg gagttcaagg cctacatcgc ggccggcgcg gtgacctacc
      901 cggagcccga cgtcacgaat tgcggcggcg tgacaccgtt tatgaagatc gcgcggctgg
      961 ccgaagcctt caacctgccg gtcacgagcc acggcgcgca cgacgtcacc gtccatctgc
     1021 ttgccgcctg cccgaaccgc tccttcctcg aggcgcacgg cttcgggctc gaccgctaca
     1081 tcgccgagcc gctcaagatc gaggaaggcg tcgccatcgc accgaaccgg ccgggccacg
     1141 gcatcacctt cgactggaac ggtctcgaga cggtcgcggc gcgccggtga ggctctgccg
     1201 tcgccggagc gccgctgatg gtcacgggcc ggatgcttcc gactgagcgg acgcgcgccg
     1261 ttgctcgacg acgaacaggg cgagcccggc ggcgacgatg acggcggcgc cgacgagcac
     1321 cgtcgggtgc ggcacgtctc cgaacacgag ccagccgaac acgacggccc agacgatcag
     1381 ggtgtactgg taaggcgtca cgacggaggc gggcgcgagc tgcagggcgc ggttgacgca
     1441 ggcgtgcgcg ccgagggcga cgaccccgag gagcgccatc agggcgaagt cgcgggccgt
     1501 cggcacggtc gagccgaaag gcgtcaggac ggcgccgagg atcagggcgc cgaccgtctg
     1561 ggtcgtcacg agcacgacgc cgttcgtgcc gccgagcttg cgcgtcacga tcatcaggaa
     1621 ggcaaacgcg acgctgccgg cgacggcgat cagcgccggc cacgaaaggc tcgacgccga
     1681 cgggttgagg gcgatgagca cgcccacaaa cccgagcgcg atggccccga cggcccagcg
     1741 gtcgaggcgc tcgccgagga gcggcgccgc cagggcggcc acgtaaatcg gccccgcaag
     1801 gtaataggtc atgacatccg cgagcggcag atacacgacc gcccagtaga agaacgccac
     1861 ctcgacgctt cccaacacca cgcgggcgag ctggagccag gggtggggcg cgaagcggaa
     1921 agccgcgagg ccggtgcgcc agatcaaagg cgcgagcacc gcgagtgcgg cgacgctgcg
     1981 aatgagcagg atctcgccga ccgaataggt cgcgacgagc cacttgccca tgacgtcgtt
     2041 gaccgagaac acgaagatgc cgagcaccat catgccgatg ccggcagccg ccgcggttct
     2101 tccgcgcgag gcgggagcct gaagggtcat ggcactgacg aaaagggggc cgcgactcag
     2161 ctcttgactg cgccggccgt cagccccgcc accatgtagc gcttgaacac gaaatagatc
     2221 gccgccggcg gcagggcgta gatcaggccc gtggtcatca agagctccca cggagagtca
     2281 tccgcggcga ggaagttgcc gagcgccacc gggagcgtga tgtccgtctc acgggagagc
     2341 agcaggaacg catagaggta ctcgttccag gccagcagga gcgcgtaggt gccgacggcc
     2401 acgagggacg gcatcatcag gggcaggtag acgagccgga acagctgcat cggcgttgcg
     2461 ccgtccatca cggccgcctc gtcgagctcg atcggcagct tgtccgacgc ctgcttcagc
     2521 acccagatgg catagggcga tgcgatcgtc accatggccc agatgagggc ccattggctg
     2581 ttcaggaggc cgtagacgcc catggtcttg tacatgggca cggcgaggaa ggccgccggg
     2641 atgaagtacg tgaacagcgc gaggttcatc actgcgcgcc cgccacggac cttgagcctg
     2701 ctgatcgcga atgccgcccc ggtcgcgatc agcagggtga tcacgcccga cgcgacggcg
     2761 atga
//
LOCUS       DASQWN010000237         3033 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1430082, whole genome shotgun sequence.
ACCESSION   DASQWN010000237 DASQWN010000000
VERSION     DASQWN010000237.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 3033)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3033)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3033
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1430082"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(324..1034)
                     /locus_tag="VE686_04525"
     CDS             complement(324..1034)
                     /locus_tag="VE686_04525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006019418.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TetR family transcriptional regulator"
                     /protein_id="HYY83749.1"
                     /translation="MSLREARSSRVASASPDALSAAGPPAPVRRRNPVKTKESILKAA
                     TAEFCRRGFDGARVDAISARSKSNIRLLYQHFGDKTGLYVAVLEHVYSEIRSKEQALR
                     LDEFPPEEAMRRLIDFTFAFFGKRQDYVALINSENLLRARHMSRSKLIRSLTVPLVTS
                     IREILARGERDGVFRRGVDPVQLYISITAQSYFHVSNRHTLSAMFDRNLADPAWLAER
                     RAHAQELILTWLKAQADR"
     gene            complement(1036..1956)
                     /locus_tag="VE686_04530"
     CDS             complement(1036..1956)
                     /locus_tag="VE686_04530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019196105.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide deacetylase family protein"
                     /protein_id="HYY83750.1"
                     /translation="MRQPAGVAGVPSLPSHGRYRYSAIRHRPPYDWPNGKRLAVYLAL
                     NLEHFAFGEGLGAELAPGGPQPDVLNFAWRDYGNRVGVWRLLDLFDALDLPASVLVNS
                     SIYGYCPEVMDAVRARGDEVVGHGRTNSERQGTLDEDGERALIRETTRMIEEAEGRAP
                     SGWLGPWISQSRVTPDLLAEAGYTYHLDWCMDDQPIWFATRGGGRILSMPYPQELNDI
                     PAIVARKDSAEDFAAMITAHFDEMLEQAASAPLVMGIALHPYIVGQPHRLRHLRTALR
                     HIAGRRDDIWFTTAGAISAHCHGLPPGLVP"
     gene            complement(1953..2411)
                     /locus_tag="VE686_04535"
     CDS             complement(1953..2411)
                     /locus_tag="VE686_04535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014496073.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nuclear transport factor 2 family protein"
                     /protein_id="HYY83751.1"
                     /translation="MSSSKSEAAGIVEAFLEASMIPDPERARTYMAPDVRITFTGGRR
                     FDDPSGSAGFNAKRYAWVKKRFERTDVAAGDSEAETIVYNTGTLYGAWPDGTPFEGNR
                     YLDRFVVRHGKIVRMDVWNDSAEILLARAGLSEDGAASVPAASMNGANAA"
     gene            2570..>3033
                     /locus_tag="VE686_04540"
     CDS             2570..>3033
                     /locus_tag="VE686_04540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020093117.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HYY83752.1"
                     /translation="MTSFQGPRFTRRAALGIAALAAATPLLVTPASAADPIKIGLVTA
                     LSGQSARAGEALTRGLTIAIDEINAKGGILGRPVELVRRDDEANPAKGVLAARELVQR
                     EKVAVLIGGLDTPVALAIVPFANSAKVPFVDPWAAGTAITHNGANPNFVFRVS"
BASE COUNT          473 a         1006 c         1063 g          491 t
ORIGIN      
        1 gcatccagcg cactcctttg gaaatcgacc ggctacgggt cgcctgacga gttgccggcc
       61 gcgcaaagcg cgggcgcggc ggccattcgg ctgcaccatc gctgcccggt catcatgacc
      121 gtaagaggga gcggttcgct aaaccatgca ccgccgtcat gaccatgcat ggtcaatcgt
      181 catcaccatc gggtcgcctg cccaaatctc acgcggtttg gacacattgg cacgcaagcg
      241 atcagtgtgc ggagtcaggg gtgacgcagt gatccggaga cggcagctgg agcgatgtcg
      301 gcgccctcag aatggatcgg agttcacctg tcggcctgag ccttcagcca ggtcaggatc
      361 agctcctgcg cgtgggcgcg gcgttcggcg agccaggccg ggtcggcaag attgcggtcg
      421 aacatggccg agagggtgtg gcggttcgag acgtggaaat agctctgcgc ggtgatcgag
      481 atgtagagct gcaccgggtc gacgccgcgc cggaacacgc cgtcccgctc gccccgggcg
      541 aggatctcgc ggatgctggt gacgagcggc acggtcaggg acctgatgag cttcgaccgg
      601 ctcatgtgcc gcgcccgcag caggttctcg ctgttgatca gcgccacgta gtcctggcgc
      661 ttgccgaaga acgcgaaggt gaagtcgatg aggcggcgca tggcctcctc gggcgggaac
      721 tcgtcgagcc ggagcgcctg ttcctttgac ctgatctccg aatagacgtg ctcgaggacg
      781 gcgacgtaga gcccggtctt gtcgccgaag tgctgataca gaaggcggat gttgctcttg
      841 ctgcgggcag agatggcgtc gacccgcgcg ccgtcgaacc ctcgccggca aaattccgcc
      901 gtggcggcct tgaggatcga ctccttcgtc ttgaccgggt tgcgccggcg caccggcgcg
      961 ggcgggccgg ccgcagagag cgcgtcgggg ctcgccgagg cgacgcgcga ggagcgcgct
     1021 tcccgtaagg acacgtcagg gcaccagacc gggcggaagg ccgtggcaat gggccgagat
     1081 ggcgcccgcc gtggtgaacc agatgtcgtc ccgtcggccc gcgatgtggc gcagcgcggt
     1141 cctcagatgc cgcaggcggt gcggctggcc gacgatgtag gggtggagcg cgatgcccat
     1201 gacgagcggc gcgctcgcgg cctgctcgag catctcgtcg aaatgggcgg tgatcatggc
     1261 ggcgaagtcc tcggccgagt ccttgcgcgc cacgatcgcc ggaatgtcgt tcagctcctg
     1321 cgggtagggc atcgacagga tgcgcccgcc gccgcgcgtc gcgaaccaga tcggctggtc
     1381 gtccatgcac cagtcgaggt gatacgtgta ccctgcctcg gcgaggagat cgggcgtcac
     1441 gcggctctgc gagatccagg gcccgagcca gcccgaggga gcgcgtccct cggcttcctc
     1501 gatcatgcgc gtcgtctcgc ggatgagggc gcgctcgccg tcctcgtcga gcgtgccctg
     1561 gcgctcggag ttggtgcgcc cgtgcccgac gacctcgtcg ccgcgcgccc ggaccgcatc
     1621 catgacctcg gggcagtagc cgtagatgct cgagttcacg agcaccgaag ccgggagatc
     1681 caacgcgtcg aacaggtcga ggagccgcca cacgccgacc cggttgccgt agtcgcgcca
     1741 ggcgaagttc aggacgtccg gttgcggccc gccaggcgca agctcggcgc cgaggccctc
     1801 gccgaaggcg aagtgctcca ggttgagggc gaggtagacg gcaaggcgct tgccgttcgg
     1861 ccagtcgtaa gggggccgat gccggatcgc gctgtagcgg tagcggccgt ggctcggcag
     1921 agacggcaca cctgcaaccc cggccggctg cctcatgcgg cgttggcccc gttcatgctt
     1981 gccgccggaa ccgatgcggc gccgtcctcc gacaggccgg cgcgcgcgag aaggatttcg
     2041 gcgctgtcgt tccacacgtc cattcgcacg atcttgccat gacgcacgac gaagcggtcg
     2101 aggtagcggt tgccctcgaa cggcgttccg tcgggccagg cgccgtagag cgtgcccgtg
     2161 ttgtaaacaa tcgtctcggc ctcgctgtcg ccagcggcga cgtccgtgcg ctcgaagcgc
     2221 ttcttcaccc aggcgtagcg cttggcgttg aagccggcgc tgccgctcgg gtcgtcgaac
     2281 cggcgcccgc ccgtgaaggt gatgcggaca tcgggcgcca tgtaggtgcg cgcacgctcg
     2341 ggatcgggga tcatcgacgc ctcgaggaag gcctcgacga tgcctgccgc ttcgctcttg
     2401 gaactgctca tcgtatcctc cgccgcatgc tgcccttggc cggggttgac accctttcag
     2461 gtgtaagaag acacttactt ctgtcaaccc ggcgaagcgt tcattgtagg gcggaatccg
     2521 ttggtctggc gcacgttcgc gccgtgagaa gcaaggggag aacaccgcaa tgacgtcgtt
     2581 ccagggcccg agattcaccc gccgtgccgc gctcggtatc gccgctttgg ccgccgcgac
     2641 gccgctcctc gtgacgccgg cgagcgccgc cgatccgatc aagatcggcc tcgttacggc
     2701 tctgtcgggg cagtcggcgc gggccggcga ggcgctcacg cgcggcctca ccatcgccat
     2761 cgacgagatc aacgccaagg gcggcatcct cggacgtccg gtcgagctcg tgcgccggga
     2821 cgacgaggcc aatcccgcga agggcgtgct tgcggcgcgc gagctcgttc agcgcgagaa
     2881 ggtcgcggtg ctcatcggcg gcctcgacac gcccgtcgcg ctcgccatcg tgccgttcgc
     2941 caacagcgcc aaggtgccct tcgtcgaccc ctgggccgcg ggcacggcca tcacccacaa
     3001 cggcgccaac ccgaacttcg tcttccgcgt ctc
//
LOCUS       DASQWN010000238         3786 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1131518, whole genome shotgun sequence.
ACCESSION   DASQWN010000238 DASQWN010000000
VERSION     DASQWN010000238.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 3786)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3786)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3786
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1131518"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..871
                     /locus_tag="VE686_04545"
     CDS             <1..871
                     /locus_tag="VE686_04545"
                     /inference="COORDINATES: protein motif:HMM:NF015366.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0042597 - periplasmic space [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="tripartite tricarboxylate transporter substrate
                     binding protein"
                     /protein_id="HYY83753.1"
                     /translation="PTGAGTDIFARLVAEPLSKALGQNIVVDNRSGAGGNIGSEFVAR
                     SKPDGYTFLIGTGGTHAINVSLYKSLNFDVVKDFEPVALLVDVPNVLIVNPKVMPDIK
                     NCADLIATAKKEPGKLNYASTGNGASGHLAGAQLANAAGIDIVHVPYRGTPPAMNAMM
                     SGEAQMMLQQSIPIMGQLKAGTFRPLGISTAQRVAALPEVPTIAEACNLPGWESTTWY
                     ALFGPKGTPEAVVRRMNEEVNKILRSPEFDQKIKEMGLVPLPSSPEELRQVQLRDIEK
                     WRDRVQKSGAQVD"
     gene            complement(905..1660)
                     /locus_tag="VE686_04550"
     CDS             complement(905..1660)
                     /locus_tag="VE686_04550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011969950.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HYY83754.1"
                     /translation="MTFSGTILVTGAASGIGAALCRRLAHPGTSLLIHTGQRRDAAER
                     VAADCAAKGARCHVAIGDLAEPETASRLVQEAHAAFGALDAVVANAGFADRRGIGMLD
                     GPGLQRSLGVMIAGLLGLAEAAYPFLRRNQRGRIVALSSFLAHVFRLGGDSFPASAAA
                     KAGMEGLARSLAAQFAPDGITVNCVVPGYVQKEQGTESSLDEARWRTALERIPVGRLG
                     LPDEIAATIEFLLSPSAAYITGQVIHVDGGLTL"
     gene            1788..3071
                     /locus_tag="VE686_04555"
     CDS             1788..3071
                     /locus_tag="VE686_04555"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011581178.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0071949 - FAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HYY83755.1"
                     /translation="MDQGRKTVGVIGAGVVGVLAATFLQRAGHDVFIVDPNNPGEGAS
                     FGNAGCLNASSVVPMSMPGTIKNVPRWLTDPMGPLVVRWSYLPALAPWLLRFIAAGTP
                     DRVRAQARALRPLIAPSIEILTSLLKEEAADGLVQRVGHLFVYRSHESWQKERLAWDL
                     RRENGITWDELDANELRQVEPNLSRDYVKGVVIRENGHTTNPHRLVKTLLERFLHDGG
                     RIERTRAVGFDVDGSRLRAIRTQDGLRSADAAVVAAGIWSRPLAGELGDKLPLETERG
                     YHLMIRDPEVIPRMPITDAEGKFVVTPMELGLRAAGTVELAGLRAPPNWERARVLLSH
                     LRRMFPALNETYADDRVSNWMGHRPSLPDSLPVIGPSRRSPDVIYAFGHGHIGMASAP
                     MTGRLVAELVTGQPASIDIAPFAPGRFAYSPTPGS"
BASE COUNT          663 a         1238 c         1287 g          598 t
ORIGIN      
        1 tccgaccggc gcggggaccg acatcttcgc gcgcctggtg gctgagccgc tctcgaaagc
       61 cctcggccag aacatcgtcg tggacaaccg ctccggcgcg ggcggcaaca tcggctccga
      121 gttcgtcgct cgctcaaagc cggatggata cacgttcctg atcggaacgg gcggaacgca
      181 tgcgatcaac gtctccctgt acaagtcgct gaacttcgac gtggtgaagg atttcgagcc
      241 cgttgcgctt ctcgtggacg tgcccaacgt gctgatcgtc aatccgaagg tgatgccgga
      301 tatcaagaac tgcgccgatc tcatcgcgac cgccaagaag gagcccggca agctcaacta
      361 cgcatccacg ggcaatggcg cctcaggtca cctggcgggg gcccagcttg cgaacgcggc
      421 cggcatcgac atcgtgcacg tgccttaccg cggcacgccc ccggccatga acgccatgat
      481 gtcaggcgag gcgcagatga tgctgcagca gtcgatcccg atcatgggcc aactcaaggc
      541 cggcaccttc cgccctctgg gcatctccac cgcgcagcgg gtcgcggccc tccccgaggt
      601 gccgacgatc gcagaagcct gcaatctgcc cgggtgggag agcacgacat ggtacgcgct
      661 gttcggaccc aagggtacgc ccgaagcagt cgtgcggcgg atgaacgagg aggtgaacaa
      721 gatcctgcgc tcgcccgagt tcgaccagaa gatcaaggag atgggccttg taccgctgcc
      781 gtcctccccg gaggaattgc ggcaggtgca actgcgcgac atcgaaaagt ggcgcgaccg
      841 cgtgcaaaag tcgggcgcgc aggtcgattg aactgcacga gggagcgtct cgtgcgaagt
      901 tcccctacag cgtgagccca ccgtcgacgt ggatcacttg ccctgtgatg taagcggcgc
      961 tcgggctgag aaggaactcg atcgtcgctg cgatctcatc gggtagcccg agccgaccca
     1021 ccggaatacg ctcaagagcg gtgcgccagc gtgcctcgtc cagcgacgac tcggtccctt
     1081 gctccttctg cacgtacccc gggacgacgc agttcaccgt aatcccgtcc ggcgcgaact
     1141 gcgccgcgag cgatcgtgcg aggccctcca ttccggcctt cgctgcggca gaggcgggga
     1201 acgagtcacc ccctaagcga aacacgtgcg cgaggaacga gctcaaggcc acgatacggc
     1261 cgcgttggtt gcggcggaga aacggatatg ccgcctcggc caggccgagc aagcccgcga
     1321 tcatcacgcc gagtgagcgc tgcaaaccgg ggccatcgag catgccgatg ccccggcggt
     1381 cggcaaagcc ggcgttcgcc accaccgcgt cgagcgctcc gaaggcggcg tgcgcctctt
     1441 gcaccaggcg ggaagcagtc tcaggctccg cgaggtcgcc gatggcgacg tggcagcgcg
     1501 cacccttcgc ggcgcagtcg gccgcaacgc gctccgccgc atcgcggcgc tgtcccgtat
     1561 ggatcagaag cgacgttcca ggatgggcga gtcgccggca aagcgcggcg ccaatgccgc
     1621 tggcggctcc cgtaaccaga atcgtgcccg aaaacgtcac gtgatcatgt ccccgcttga
     1681 gcgggctcgc ctgaccggcg gagccttgca agtgtattct gcgcgagcga gggcctacaa
     1741 gggacgcgcg ccggcaggcg ccggtgcggc aggcgcgagg accggtgatg gaccagggca
     1801 ggaagaccgt cggggtgatc ggggcaggcg tggtcggcgt cctcgcggcg accttcctgc
     1861 aacgcgccgg ccatgacgtg ttcatcgtcg acccgaacaa tcctggggag ggcgcgtcct
     1921 tcggcaatgc cgggtgcctc aacgcgtcct cggtcgtgcc catgtcgatg ccgggaacga
     1981 tcaagaacgt tccgcgatgg ctaaccgacc cgatgggccc tctcgtggtc cggtggagct
     2041 atctccccgc tctcgcgcca tggcttctcc gcttcatcgc cgcgggaacg ccggaccggg
     2101 tccgagcgca agcgcgcgcg ttgcgtccgc taatcgcccc gtcgatcgaa atcctcacct
     2161 ccctgttgaa ggaggaggcc gccgacgggc ttgttcagcg cgtcggtcat cttttcgtct
     2221 accgctcgca cgagagctgg cagaaggaac gtctcgcctg ggacttgcgg cgggagaacg
     2281 gcatcacctg ggatgagctc gacgcgaacg agctgcgcca ggtagagccg aacctctcgc
     2341 gggactacgt gaagggtgtg gtcatccgcg aaaacgggca cacgacgaat ccgcatcgtc
     2401 tcgtaaaaac gctgcttgag agatttctgc acgacggcgg tcggatcgag aggacgcgcg
     2461 ccgtcgggtt cgatgtcgat ggctcgcgac tgagggcgat ccggacccaa gatggcctgc
     2521 ggtccgccga cgcggcggtc gtggcggcgg gaatttggtc gaggccgctt gccggcgaac
     2581 tcggagacaa gctcccgctc gagactgagc gcggctatca cctgatgatc cgcgatcccg
     2641 aggtcatccc tcgcatgccg atcaccgacg cggaggggaa gttcgttgtg accccgatgg
     2701 agctgggcct tcgcgccgcc gggacggtgg agcttgccgg gctcagggcg ccacccaatt
     2761 gggagcgcgc gcgcgtcctg ctcagccact tgcggcggat gttccctgcg ctgaatgaga
     2821 cttacgccga cgatcgcgtg agcaactgga tggggcaccg cccgagcctg ccggactcgc
     2881 ttccggtcat tggcccatcc cgccgctcgc ctgatgtgat ctacgccttc gggcacggcc
     2941 acatcggcat ggcctcggcg cccatgacag gcagattggt ggcagaactc gtgaccggcc
     3001 agccggcgag catcgacatc gccccgtttg caccgggacg cttcgcgtac tcgccgacgc
     3061 ccgggtcctg aaatcttcag ccgcgagagc ggcaattgtg gcgcgcggct atcggctact
     3121 ggcggaacgc gctgcagctt ggcggcgccg cgttcctcac ggacggcggc ggggaacggg
     3181 cagccgtggc ctgatcgcgc tacgagcctc gccgaccccc aggtcggacc tggtgagggg
     3241 gcccggtgcg accagagctg gcgcatatcg ggtgacacgc ggaaagtcgg gtgtgggcgc
     3301 gctcagggcg aaaaaagccg atggcgctag caacgaaaag cccgccgctg tggggcggcg
     3361 ggcggtcgtg cgcgcgctct ggggggtggg aggagcgcgc cgacctattc tcgccgaagg
     3421 atcgatcctg tccatcatca gctagcggta cgaggcatcc ctataaagag gtacgccatc
     3481 ggcgaagatc gaccatgttg cccgaggcct gcgaatggcc tctctcgtgt tgagcgcgac
     3541 cggtgcggca tgccgcgcgc ggggcgatca tcgtgcgcct gcggccgcgc cccggcgagc
     3601 cggacgcaat tcgctgcgac tcagacgagc atcccgggtg gcttgataat ccgcgtcact
     3661 cgggtccgca tccatctcgg cgcgtgtcgc tctttacggc acgatgttcg tcgggctggc
     3721 atggaccatc gtcaaaaccg cggaggcgac cgcgatgagg atgatcagcg cgaagatgag
     3781 agtgcg
//
LOCUS       DASQWN010000239         2662 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1231569, whole genome shotgun sequence.
ACCESSION   DASQWN010000239 DASQWN010000000
VERSION     DASQWN010000239.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2662)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2662)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2662
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1231569"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..518
                     /gene="radC"
                     /locus_tag="VE686_04560"
     CDS             <1..518
                     /gene="radC"
                     /locus_tag="VE686_04560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011500585.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="DNA repair protein RadC"
                     /protein_id="HYY83756.1"
                     /translation="FGSFAEALNAPEPRLREVPRLGEAAITEIKLVRAAALRLMRGEV
                     QNRPVLASWSQVLDYCRASMGFETKEQLRILFLDKRNQIIADEVQQKGTVDHTPVYVR
                     EVVKRALELSASAVILVHNHPSGDPTPSSADIKMTREIVDVAKPLGIVVHDHIIVGRE
                     GHASLKGLKLM"
     gene            complement(529..2382)
                     /locus_tag="VE686_04565"
     CDS             complement(529..2382)
                     /locus_tag="VE686_04565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015933383.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HYY83757.1"
                     /translation="MIFDWLERRIDPFAPFDEGETPPNTVGRFAWHYLRPIKGWLGVL
                     FVVSLAVGVLESSLYIVMGWFVDLLARSAPERLLADHGVSLGAAAALVLFIRPVLHYL
                     NELVSNQIIVPQTTNMVRWRTHAYTLGHSLGYFQSDFAGRLANRITQAGPAIREIAVT
                     LLDTLLYVAIYAATALGLFGSISGWLALPMVLWIAAYVGLLRYFVPRAQTRSLANAEA
                     RSVAVGRIVDSYTNVLTVKLFARAEEERSAVRAALDRWTRAFLHSFRLITNVTGVLSV
                     MNSLLIVTTGAVSVMLWSRGAMSSGDAAAGIALVMRLVAMSGWVMQTVRGVFENVGVV
                     QESMQTIARPHAILDAPDAKHLEVARGSVRFENVSFHYGREDGVLEDFSLSIAPGEKV
                     GLVGASGAGKSTIASLLLRLHDLEGGRILVDGQDIATVTQDSLRQQIAVVTQDTSLLH
                     RSIRDNIAYGRPESTEDEIVRAARLAHAHDFILELEDDGGRTGYDARVGERGVKLSGG
                     QRQRIAIARVILKDAPILVLDEATSALDSEIEAAIQDALTTLMRGKTVIAIAHRLSTI
                     AALDRLVVIDRGRIVEEGSHAELLRRDGLYARLWSRQSGGFLGASQESSAA"
     gene            2462..>2662
                     /locus_tag="VE686_04570"
     CDS             2462..>2662
                     /locus_tag="VE686_04570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012605726.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0008173 - RNA methyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0006396 - RNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TrmH family RNA methyltransferase"
                     /protein_id="HYY83758.1"
                     /translation="MPRLVLFQPDIPQNAGTMLRMAACLGVPVEIVEPAGFDVSDRNL
                     RRAGLDYLERVSITRHVSWRAFE"
BASE COUNT          464 a          875 c          920 g          403 t
ORIGIN      
        1 agttcgggag ttttgccgag gcgctgaacg cgcccgagcc gcgcttgcgg gaggtgccca
       61 ggcttggcga agcggcgatt accgagatca agctcgtgcg cgcggcggcg ctccggctga
      121 tgcgcggcga agtgcagaac cggccggtgc tcgcctcatg gagtcaggtt ctcgactatt
      181 gccgagcctc gatgggcttc gagaccaagg agcagctgcg catattgttc ctcgataagc
      241 gcaaccagat cattgccgac gaggtgcagc aaaagggaac cgtcgatcac accccggtct
      301 atgtgcgcga ggtggtgaag cgggcccttg agctctcagc ctcggcggtg atcctcgtcc
      361 acaaccaccc gtcgggcgac ccgacgccct cctcggccga catcaagatg acgcgcgaga
      421 tcgtcgacgt cgcaaaaccg ctcggcatcg tcgtccacga ccacatcatc gtcggccggg
      481 agggccacgc gagcctcaaa ggcctcaagc tgatgtgatc gcaagggttc aggccgccga
      541 gctttcctgc gaggcgccga ggaaaccgcc cgattgccgg ctccaaagac gcgcgtagag
      601 cccgtccctg cgcaagagct cggcgtgact cccctcctcg acgatacggc cgcggtcgat
      661 caccacgaga cggtcgagcg ccgcgatggt cgacagccgg tgtgcaatgg cgatgaccgt
      721 cttgccgcgc atgagggtgg tgagtgcgtc ctggatcgcc gcctcgatct cagaatcgag
      781 cgccgacgtc gcctcgtcga gcaccaggat gggcgcgtcc ttcaggatca cgcgcgcgat
      841 ggcgatgcgc tggcgttggc cgcccgaaag cttgacccct cgctcgccga cacgggcgtc
      901 gtagcccgta cgccccccgt cgtcctcgag ttccaggatg aaatcgtgcg catgggcgag
      961 ccgtgccgcc cgcacgatct cgtcttcggt cgactcgggg cggccatagg cgatgttgtc
     1021 gcggatcgag cggtgcagga gcgaggtatc ctgcgtcacg accgcgatct gctggcgtag
     1081 cgaatcctgc gtgacggtcg cgatatcctg cccgtcgacg aggatgcgtc cgccctcgag
     1141 gtcgtggagg cgcagaagca gggacgcgat ggtgctcttg ccggcgccgc tcgcgccgac
     1201 gaggccgacc ttctcgcccg gagcgatcga caggctgaaa tcctcgagga caccgtcctc
     1261 gcggccgtag tggaaggaca cgttctcgaa gcgcacgctg ccgcgggcca cctcgagatg
     1321 cttggcgtcc ggggcgtcga ggatggcgtg cggacgcgcg atggtctgca tgctctcctg
     1381 caccaccccg acgttctcga acacgccgcg cacggtctgc atgacccacc ccgacatggc
     1441 gacgaggcgc atcaccaggg cgatcccggc ggcggcgtcg ccgctcgaca tggcaccgcg
     1501 cgaccacagc atcaccgaca cggcgcccgt ggtgacgatc agcaggctgt tcatcaccga
     1561 caggacgccg gtcacgttgg tgatcagccg gaaggagtgg aggaacgccc gtgtccagcg
     1621 gtctagggcc gcgcgcacgg ccgagcgctc ctcttcggcc ctcgcgaaaa gcttgacggt
     1681 cagcacgttg gtgtagctgt cgacgatgcg ccctaccgcg accgagcgcg cctcggcatt
     1741 ggcgagcgac cgcgtctgcg cgcgcgggac gaagtaccgg agcaggccga cgtaggcagc
     1801 gatccaaagc accatgggaa gcgcgagcca gccgctgatc gagccgaaga ggccgagcgc
     1861 cgtcgcggcg tagatggcca cgtagagcag cgtgtcgagg agcgtgacgg cgatctcgcg
     1921 gatcgccgga ccggcctgcg tgatgcggtt cgcgagccgg cccgcgaagt cggactgaaa
     1981 gtatccgagc gagtgcccga gcgtgtacgc atgcgtccgc caccggacca tgttggtggt
     2041 ctggggaacg atgatctggt tcgagacgag ctcgttcagg tagtggagaa cgggccgaat
     2101 gaagaggacg agcgcggcgg cggctccgag actgacgcca tggtcggcga gcagccgctc
     2161 gggcgccgac ctggcgagga gatccacaaa ccagcccatg acgatgtaga gcgaggactc
     2221 gagcacgccg accgcgagcg agaccacgaa caggaccccg agccagccct tgatggggcg
     2281 caggtaatgc caagcgaacc gaccgaccgt gttcggcggg gtctcgccct cgtcgaaggg
     2341 ggcgaaggga tcgatgcggc gttcgagcca gtcgaagatc atcgcggggc agatctcggc
     2401 atgagtgagg agcggccttt cccttgaccg ccccggcgag ttcggacgat gacggcgggc
     2461 gatgccccgg ctcgtcctgt tccaaccgga tatcccgcag aacgcaggga ccatgctgcg
     2521 catggccgcc tgcctcggcg tcccggtcga gatcgtcgag cccgcgggct tcgacgtctc
     2581 ggaccggaac ctgcgccggg ccgggctcga ttatctcgag cgcgtctcga tcacgcgcca
     2641 cgtctcctgg cgcgccttcg ag
//
LOCUS       DASQWN010000240         2986 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_317869, whole genome shotgun sequence.
ACCESSION   DASQWN010000240 DASQWN010000000
VERSION     DASQWN010000240.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2986)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2986)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2986
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_317869"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(338..1081)
                     /gene="ubiG"
                     /locus_tag="VE686_04575"
     CDS             complement(338..1081)
                     /gene="ubiG"
                     /locus_tag="VE686_04575"
                     /EC_number="2.1.1.222"
                     /EC_number="2.1.1.64"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018387390.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008689 - 3-demethylubiquinone-9
                     3-O-methyltransferase activity [Evidence IEA];
                     GO_process: GO:0006744 - ubiquinone biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional 2-polyprenyl-6-hydroxyphenol
                     methylase/3-demethylubiquinol 3-O-methyltransferase UbiG"
                     /protein_id="HYY83759.1"
                     /translation="MPTRASSSVDPDEVARFERMAARWWDANGPMRALHKLNPVRLAY
                     LRDAACRSFGRDARAPFPLSGLTVLDVGCGGGILSEPLARLGATVTGLDPAAGNIAVA
                     KLHAEEAGLTIEYRGETVEQVAARGERFDMVLAMEVVEHVFDVEAFVEACARTVNPGG
                     LLGLSTINRTMRAFALAIVGAEYVLGWLPRGTHEWDKFVTPDELEDAVTRAGLSVSDV
                     SGVVYNPLRDAWTLSRDTSVNYMALAERR"
     gene            1221..2459
                     /locus_tag="VE686_04580"
     CDS             1221..2459
                     /locus_tag="VE686_04580"
                     /EC_number="2.7.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012452830.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004072 - aspartate kinase activity
                     [Evidence IEA];
                     GO_process: GO:0009089 - lysine biosynthetic process via
                     diaminopimelate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate kinase"
                     /protein_id="HYY83760.1"
                     /translation="MPRLVMKFGGTSVATVERIRNVARHVEREVRAGYDVAVVVSAMA
                     GKTNELVAWCKEAAPLYDPREYDVVVASGEQVTSGLLAIVLQGMGLKARSWQGWQIPI
                     LTSDAHGAARIEEVDGTALMKSFTERREIAVVSGFQGMHKATGRIATLGRGGSDTSAV
                     ALAAGIKAERCDIYTDVDGVYTSDPRIVTKARRLDRVSYEEMLEMASLGAKVLQVRSV
                     ELAMVHQVPTYVRSSFDDPADPKQGTLICGEEDIVEQQIVTGIAYSKDEAQITLRNVA
                     DKPGVAAAIFGPLADANINVDMIIQVVSDDSTTTDLTFTVPAADFDRAKAILAEERAR
                     IGYGALQGASDVVKVSAIGVGMRSHAGVAARAFKALAERGINIRAITTSEIKFSVLID
                     AAYTELAVRTLHSLYGLDRA"
     gene            2536..>2986
                     /locus_tag="VE686_04585"
     CDS             2536..>2986
                     /locus_tag="VE686_04585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003599951.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GAF domain-containing protein"
                     /protein_id="HYY83761.1"
                     /translation="MPAAPGGPRVLLRRLREIMAEPVSAQARLDRIVILIAANMVAEV
                     CSVYVMRGDGVLELYATEGLNREAVHLTTMRAGEGLVGLIASTAEPLALSDAQTHPAF
                     SYKPETGEEIYHAFLGVPILRAGNTLGVLVVQNRTYRVYTEEEVEALQ"
BASE COUNT          439 a         1052 c         1043 g          452 t
ORIGIN      
        1 gagggcgagt gaaagaggct cgaagtttcg gcgacgccgc ggtcgaggcg acgcgacttt
       61 ccccccaccc tcgctcgggc ccttggcccg agtcgatccc tccccgcact cgctgacgcg
      121 agcgggggag ggcggggagg cggcggcggc gcggcatgcc cgccgatcat ctcggcatct
      181 tcccggatgt cggcatcttc ccggatttgt cgccggcctc ctcggcattt tgtcggcata
      241 gtcgccgatt ttgccggaag cgtccggcgc cgaggcccgt tgggaggatg acgatgtcgc
      301 agggtgcggt cccgtttgac gcgccttccg gcccgcctca gcgccgctcg gcgagggcca
      361 tgtagttcac gctggtgtcg cgggagaggg tccaggcgtc gcgcaggggg ttgtagacga
      421 ccccgctcac gtcgctcacc gagagcccgg cccgggtcac cgcgtcctcg agctcgtccg
      481 gggtgacgaa cttgtcccat tcgtgcgtgc cgcggggcag ccagccgagc acgtactcgg
      541 cgccgacgat ggcgagcgcg aaggcgcgca tggtccggtt gatggtcgag aggccgagga
      601 gcccgccggg gttcacggta cgggcgcagg cctcgacgaa ggcctccacg tcgaagacgt
      661 gctcgaccac ctccatggcg aggaccatgt cgaagcgctc gccccgagcg gcgacctgct
      721 cgaccgtctc gccgcggtat tcgatggtga ggccggcctc ctccgcatgg agcttcgcga
      781 ccgcgatgtt gccggcggcc gggtcgagcc ccgtgaccgt ggcgccgagg cgggcgaggg
      841 gctccgacag gatgccgccg ccgcagccga cgtcgagcac cgtcaggccg gagagcggga
      901 agggcgcccg ggcatcgcgg ccgaagctgc ggcaggcggc gtcgcgcagg taggcgaggc
      961 ggaccgggtt gagcttgtgc agggcgcgca tggggccgtt cgcgtcccac cagcgcgcgg
     1021 ccatgcgctc gaagcgggcg acctcgtccg gatcgacgct cgatgaggcc ctcgtcggca
     1081 ttcccgtctc ccggcccgcg gcgccttcgc cctgcgttgc gcctgcccgc agcgtcatct
     1141 atacgcgcct tttcgcgccc gcgaaggggc ggccggcggg gcgaagcgcc tcggcgtcgt
     1201 gcgttctcaa ggctcctccc atgcctcgcc tggtgatgaa gttcggcggc acctcggtcg
     1261 ccaccgtcga gcgcatccgc aacgtcgccc ggcacgtcga gcgcgaggtc agggccggct
     1321 acgacgtggc ggtggttgtc tccgccatgg cgggcaagac caacgagctc gtcgcctggt
     1381 gcaaggaggc ggcgcccctc tacgatccgc gcgagtacga tgtggtcgtc gcctcgggcg
     1441 agcaggtgac ctccgggctc ctcgccatcg tgctccaggg catggggctg aaagcccgct
     1501 cctggcaggg ctggcagatc ccgatcctca cctccgacgc gcatggtgcg gcgcggatcg
     1561 aggaggtcga cggcacggct ctgatgaaga gcttcaccga gcggcgcgag atcgccgtgg
     1621 tgtcgggctt ccagggcatg cacaaggcga cgggccggat cgcgacgctc gggcgcggcg
     1681 ggtcggacac cagcgcggtg gcgcttgccg ccggcatcaa ggccgagcgc tgcgacatct
     1741 acacggacgt cgacggcgtc tacacctcgg acccccggat cgtcacaaag gcgcgccggc
     1801 tcgaccgggt ctcgtacgag gagatgctcg agatggcgtc gctcggcgcc aaggtgctcc
     1861 aggtgcgctc ggtcgagctc gccatggtgc accaggtgcc cacttacgtg cgctcgagct
     1921 tcgacgaccc ggccgatccg aagcagggca ccctcatctg cggcgaggag gatatcgtgg
     1981 aacagcagat cgtcaccggc atcgcctact ccaaggacga ggcccagatc acgctgcgca
     2041 acgtcgccga caagcctggc gtcgcggcgg cgatcttcgg cccgctcgcg gatgccaaca
     2101 tcaatgtcga catgatcatc caggtggtct cggacgattc gacgaccacc gatctcacct
     2161 tcacggttcc ggccgccgac ttcgatcgcg ccaaggccat cctcgccgag gagagggctc
     2221 gcatcggcta cggcgccctc cagggtgcga gcgacgtcgt caaggtctcg gccatcgggg
     2281 tcggcatgcg cagccacgcc ggcgtcgccg cgcgggcctt caaggcgctg gccgagaggg
     2341 ggatcaacat ccgcgccatc accacgtcgg agatcaagtt ctcggtgctg atcgacgccg
     2401 cctacaccga gcttgccgtg cggaccttgc actcgctata cggcctcgac cgggcttgat
     2461 tgacgcaaag ctcgccttgc cgcgacagtg acgacggccg gctccggccg gtcgaacgaa
     2521 cggaagccga cgcccatgcc agccgctccc ggcggtccgc gcgtactcct gcgccgcctc
     2581 cgcgagatca tggcggagcc ggtgagcgcc caggcgcgcc tggaccggat cgtcatcctc
     2641 atcgccgcca acatggtggc cgaggtctgc tcggtctacg tcatgcgcgg cgacggcgtc
     2701 ctcgagctct atgccaccga gggcctgaac cgcgaggccg tccacctcac caccatgcgg
     2761 gcaggcgagg gcctcgtcgg cctcattgcc tcgaccgccg agcccctggc gctgtccgac
     2821 gcgcagacgc acccggcgtt ctcgtacaag cctgagacgg gcgaggagat ctaccacgcc
     2881 ttcctgggcg ttccgatcct gcgcgccggc aacacgctcg gcgtcctcgt cgtccagaac
     2941 cgcacctatc gtgtctatac cgaggaggag gtcgaggccc tccaga
//
LOCUS       DASQWN010000241         2062 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1131670, whole genome shotgun sequence.
ACCESSION   DASQWN010000241 DASQWN010000000
VERSION     DASQWN010000241.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2062)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2062)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2062
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1131670"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(297..1349)
                     /locus_tag="VE686_04590"
     CDS             complement(297..1349)
                     /locus_tag="VE686_04590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011654922.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc-binding dehydrogenase"
                     /protein_id="HYY83762.1"
                     /translation="MKGVVLAGDRRVEILDFPDPTPGPGEVVLEIKASGMCGSDLKFY
                     RAVGGAASLGFKAAAGPVIGGHEPCGVVVAVGAGVSEKQGRVGMRVMQHHYRGCGVCP
                     HCATGWMQLCVEGVAEVYGVTGHGAHARYMKCPARTLVALPDELSFEAGAAISCGTGT
                     AWGALQRLGLQGDHTIAVFGQGPVGLAATQLAAAMGARVIALDTSPERLARAREFGAD
                     ATIDPAATDNVVQAIRDLTHGLGAHASLDASSSPLARAQAVRCMRTWGKACFVGEGGE
                     VSLDVSNDLLRRQVTLIGSWTFSTVGQAECARFIADRGIDVDAIFTHQWRLDQAEEAY
                     RVFDAQNAGKGVIHPS"
     gene            1448..>2062
                     /locus_tag="VE686_04595"
     CDS             1448..>2062
                     /locus_tag="VE686_04595"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY83763.1"
                     /translation="MTSADELPPPAAARAHPLESGPRRGPRIVFAMALVAFALWIARD
                     YVVALVWAVLIAVSVWPLYERYIAARGAPERRSGPALLFTVLTGLALLIPLTILMVEV
                     GREARAVADWLKRAQESGLPVPQWLIGVPFLGRMADEWWRSHLVAPEQAGEFLRGFDL
                     STLAAWSEAFGGRLLHGLVLLLFTFMAVYLLFRDGDRLAARGLDF"
BASE COUNT          274 a          742 c          730 g          316 t
ORIGIN      
        1 cagctatccg gatatgacgg tctcgcgcta ccggcaggcg atggtctttt cgccgaacgc
       61 tctcgaccgc atggttggaa accttaggaa gctcggcttg ccggattgat gcggagaccg
      121 gctcggagcg aggcggcgcc cctcgcgaca tgctccacgg ccatcatggc catggggcgt
      181 ccgcgcggcc gtcatcatga tcgccttccc tctggcgaga gcgccgtcat gaagattgca
      241 ccgtgcatca ccaatgcgtc gccggaacgc cccgacgcgg gccggaagtc agccgcttac
      301 gaggggtgaa tgacgccctt gccggcgttc tgggcgtcga agacgcggta ggcttcctcg
      361 gcctggtcga ggcgccactg gtgcgtgaag atggcgtcga cgtcgatgcc ccggtcggcg
      421 atgaagcgcg cgcactcggc ctggccgacg gtcgagaagg tccaggagcc gatgagcgtc
      481 acctgccgac gcaggaggtc gttcgacacg tcgagggaga cctcgccgcc ctcgccgacg
      541 aagcaggcct tgccccaggt gcgcatgcag cgcaccgcct gcgcccgggc gaggggcgac
      601 gacgacgcgt cgagggaggc gtgcgccccg agcccgtggg tcaggtcgcg gatcgcctgg
      661 acgacgttgt cggtcgcggc cggatcgatg gtcgcgtcgg cgccgaactc ccgggcgcgg
      721 gcgaggcgct cggggctcgt gtcgagggcg atgacgcggg cacccatggc ggccgcgagc
      781 tgcgtcgcgg cgaggccgac gggtccctgg ccgaacaccg cgatggtgtg gtcgccctgg
      841 aggccgaggc gttgcagggc gccccaggcg gtcccggtgc cgcacgagat cgccgcgccg
      901 gcctcgaacg acagctcgtc gggcagcgcc acgagggtgc gcgccgggca cttcatgtag
      961 cgcgcgtgcg ccccgtgccc ggtgacgccg tagacctccg ccacgccctc gacgcagagc
     1021 tgcatccatc ccgtcgcgca gtgcgggcag accccgcagc cacgatagtg atgctgcatc
     1081 acgcgcatcc caacccgccc ctgcttctcc gagacgccgg cgccgacggc gaccacgacg
     1141 ccgcagggct cgtgcccgcc gatgaccgga ccggccgcgg ccttgaagcc gagcgacgct
     1201 gcgccgccca ccgcgcggta gaacttgagg tcgctgccgc acatgcccga cgccttgatc
     1261 tcgagcacga cctcgcccgg acccggcgtc gggtccggga agtcgaggat ttcgaccctg
     1321 cggtcgcccg cgagaaccac gcccttcatg cgaacctccc tgttcgcggc aagctcgcag
     1381 gtccgacgag cgcgttcaag cgctcgcgca aggtgcaacc ctcgccgcac cgccgcattg
     1441 ggagaagatg acgagcgccg acgagcttcc gcctcccgct gcggcccgtg cccatccgct
     1501 cgagtccggt ccgcggcgcg ggccgcgcat cgttttcgcc atggcgctcg tggctttcgc
     1561 gctgtggatc gcgcgcgact acgtcgtggc gctcgtctgg gccgtgctga tcgccgtctc
     1621 cgtatggccc ctctacgagc gctacatcgc cgcccggggc gcgccggagc ggcgctccgg
     1681 gcccgcgctc ctgtttacgg tgctcaccgg gctcgccctc ctgatcccgc tgacgatcct
     1741 gatggtggag gtcggacggg aggcgcgcgc cgtcgccgat tggctcaagc gcgcgcagga
     1801 gagcgggctt ccggtgcccc agtggctgat cggcgtaccg ttcctcgggc gcatggcgga
     1861 cgagtggtgg cgctcccacc tcgtcgcgcc ggagcaggct ggagagttcc tcaggggctt
     1921 cgacctcagc acgctcgcgg cgtggtcgga ggccttcggc ggtcgcctgc tgcacgggct
     1981 cgtgcttctg ctcttcacct tcatggcggt ctatctcctg ttccgcgacg gcgaccggct
     2041 cgcggcgcgc ggcctcgact tc
//
LOCUS       DASQWN010000242         3402 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1231807, whole genome shotgun sequence.
ACCESSION   DASQWN010000242 DASQWN010000000
VERSION     DASQWN010000242.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 3402)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3402)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3402
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1231807"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..784
                     /locus_tag="VE686_04600"
     CDS             <1..784
                     /locus_tag="VE686_04600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019444563.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016627 - oxidoreductase activity, acting
                     on the CH-CH group of donors [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase family protein"
                     /protein_id="HYY83764.1"
                     /translation="EAGSDAGSLKTMARRDGNDGFVINGAKRFITNAPEAGLFTLFAR
                     TDPESRDARGVSAFVIEADTPGITIGATDRKMGQKGAHTADVTFEDVRVPADAIIGGP
                     AKEGQGFKTAMKVLDRGRLHISAVCVGVAERLIDDSLRYAMERKQFGQAIAEFQLVQA
                     MLADSKAEAYAARCMVEETARRKDAGANVSTEAACAKMFASEMVGRVADRAVQIHGGA
                     GYVADYGIERFYRDVRLFRIYEGTTQIQQLVIARNMIREAKG"
     gene            781..2343
                     /locus_tag="VE686_04605"
     CDS             781..2343
                     /locus_tag="VE686_04605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018322624.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AMP-binding protein"
                     /protein_id="HYY83765.1"
                     /translation="MSGPAPAKSPPLPRRIHELVARHAAERPDALALVDHDGRRLTWR
                     EYAQAVDNAVAVLRDAGVRGGDRVVIVLENCVAVAAMLMAASRLDAWAVLVNARLSAP
                     ELDRIRDHCEPRAIVFSNAVSPDATRHADRLDARHVEDPLLGSVRIAGGLPCSPEPVE
                     ESNAGQVAAMIYTSGTTGTPKGVMLTHANVLFIAVVSGATRALNTADLVYAVLPISHV
                     FGLASTFLGTVNAGGALLLVPRFDPAHLARALAEGVTVFQGVPAMYAKLLEHLDRAGE
                     RLRAPRLRYMSAGGAPLDLDWKRRVEARFGTALNNGYGLTEAAPTVSQTRIDDPRQDD
                     SVGQALPGVAIRIVDKQERDVPEGEVGEVWVRGPNVMKGYYRDPAATAETITPDGWLR
                     TGDLGRRDPDGALFLVGRSKELIIRSGFNVYPPEVEAAFNGHPDVVQSAVVGRRVSGN
                     EEVIAFVELVPGARVDDEALKAFAAQRLAPYKRPQHLFIREHLPASSTGKITKHALIL
                     LAEELIAGEGRS"
     gene            2340..2756
                     /locus_tag="VE686_04610"
     CDS             2340..2756
                     /locus_tag="VE686_04610"
                     /EC_number="3.1.2.-"
                     /inference="COORDINATES: protein motif:HMM:TIGR00369.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0047617 - acyl-CoA hydrolase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PaaI family thioesterase"
                     /protein_id="HYY83766.1"
                     /translation="MSADPTLARERANPSAFQEHMGYELLAWEPDHAVLGYSIQPEHM
                     NRTGRLHGGVVATLLDTTMGYSGVHADGDAGPRSCVTLSLTVNFVGAVSEGRLTIEAR
                     RTGGGKTIFFAEGNVRDAVGNLIATATGSFRYITRN"
     gene            complement(2777..>3402)
                     /locus_tag="VE686_04615"
     CDS             complement(2777..>3402)
                     /locus_tag="VE686_04615"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY83767.1"
                     /translation="GNARLTVNSPSRNRLVDHKPFQLQLAHRCRLRVPRTLVTNDPEE
                     ARRFVFHHGRAVTKSIASWRFRLIESRLLEAGDLPDLSSIALCPVLLQEYVDGTTEYR
                     VTVIGTRVFAAKVDLSDAPYPVDVRLHFSRKAEAAELPRGLEERLLQFHREAGLIYGA
                     YDLRCDRNGVPYFLEVNPDGQYLFIEIETGLPISEALADLLLQPPAT"
BASE COUNT          550 a         1203 c         1171 g          478 t
ORIGIN      
        1 ggaggcgggc tccgacgccg gcagcctgaa gaccatggcg cgccgcgacg gcaacgacgg
       61 cttcgtgatc aatggcgcca agcgcttcat caccaatgca cccgaggccg ggctcttcac
      121 cctcttcgcc cgcaccgacc ccgagagtcg tgatgcgcgc ggcgtctcgg cgttcgtgat
      181 cgaggccgac acgccgggca tcaccatcgg cgcgaccgac aggaagatgg gccagaaggg
      241 cgcccacacg gccgacgtga cgttcgagga cgtgcgcgtg cccgccgacg ccatcatcgg
      301 tggtcccgcg aaggagggcc agggcttcaa gaccgccatg aaggtcctcg atcgcggccg
      361 gctgcacatc agcgccgtgt gcgtcggcgt cgccgagcgt ctcatcgacg actcgctgcg
      421 ctacgccatg gagcgcaagc agttcgggca ggccatcgcc gagttccagc tcgtgcaggc
      481 gatgctcgcc gactccaagg ccgaggccta cgcggcgcgc tgcatggtcg aggaaacggc
      541 gcggcgcaag gacgccgggg ccaacgtgtc cacggaggcc gcctgcgcaa aaatgttcgc
      601 aagcgagatg gtcggccgcg tggcggaccg cgccgtgcag attcacgggg gcgccggcta
      661 cgtcgccgac tatggcatcg agcgcttcta ccgcgacgtc cgcctgttcc gcatctacga
      721 ggggacgacg cagatccagc agctcgtgat cgcccgcaac atgatccgcg aggccaaggg
      781 atgagcggcc cggcgccggc aaagtcaccg ccgcttccgc gccgaatcca cgagctcgtc
      841 gcccgccatg cggccgagcg gcccgacgcg ctcgcgctcg tcgaccacga cggccggcgc
      901 ctgacatggc gcgagtacgc gcaggccgtc gacaacgccg tcgcggtctt gcgcgacgcg
      961 ggcgtgcgtg gcggcgaccg ggtggtcatc gtcctggaga attgcgtcgc cgttgcagcc
     1021 atgctcatgg cggcgagccg cctcgacgcc tgggcggtgc tcgtcaacgc gcgcctgtcg
     1081 gcccccgagc tcgaccgcat ccgcgaccat tgcgaaccgc gcgcgatcgt ctttagcaac
     1141 gctgtgtcgc cggacgcgac gcgccacgcc gaccgcctcg acgcccggca cgtggaagac
     1201 ccgctgctcg gctccgtccg catcgcgggc ggccttccgt gcagccctga gccggtagag
     1261 gagagcaacg ccggccaggt cgccgcgatg atctacacct ccggcacgac cggcacgccc
     1321 aagggcgtga tgctgacgca tgccaacgtg ctgttcatcg ccgtggtctc gggcgccacg
     1381 cgggcgctca acaccgccga cctcgtctat gccgtgctgc cgatcagcca cgtcttcggc
     1441 cttgcctcga ccttcctcgg caccgtcaac gctggcggcg cgctgctgct ggtgccgcgc
     1501 ttcgatcccg cccacctcgc gcgggcgctt gcggagggcg tgacggtgtt ccagggcgtg
     1561 ccggccatgt acgccaagct cctcgagcac ctcgaccgcg ccggcgagcg cttgagggcg
     1621 ccgcgcctgc gctacatgtc ggcgggcggc gcgccgctcg atcttgactg gaagcgccgc
     1681 gtcgaggctc gcttcggcac ggcgctcaac aacggctacg gcctgaccga ggcggcgccg
     1741 acggtctcgc aaacgcgtat cgacgatccg cgccaggacg acagcgtcgg ccaggctctg
     1801 ccaggcgtcg ccatccgcat cgtcgacaag caggaacgag acgtccccga gggcgaggtc
     1861 ggcgaggtct gggtgcgtgg gccgaacgtc atgaagggct actaccgcga tcccgccgcg
     1921 accgccgaga cgatcacgcc ggacggctgg ctgcgcacgg gagacctcgg gcggcgcgac
     1981 cccgatgggg cgctgttcct cgtcggccgc tcgaaggagc tcatcatccg ctcaggcttc
     2041 aacgtctatc cgcccgaggt cgaggcggcc ttcaacgggc acccggacgt ggtccagtcg
     2101 gccgtggtcg gccggcgcgt gtcgggcaat gaggaggtca tcgcgttcgt cgagctcgtg
     2161 cccggcgccc gcgtcgatga tgaggcgctc aaggccttcg cggcgcagcg gctcgcgccc
     2221 tacaagcggc cgcagcacct cttcatccgc gagcacctgc cggcaagctc gacgggcaag
     2281 atcaccaagc acgccctcat cctgctggcg gaggaactga tcgccgggga ggggaggtca
     2341 tgagcgcgga cccgacgctg gcgcgcgagc gcgcgaaccc gagcgccttc caggagcaca
     2401 tgggctacga gctcctcgcc tgggagccgg accacgccgt ccttggctac agcatccagc
     2461 ccgagcacat gaaccgcacg ggccgcctgc acggcggcgt cgtcgccacg ctcctcgaca
     2521 ccaccatggg ctactcgggc gtccacgcgg acggcgacgc cgggccacgc agctgcgtga
     2581 cgctgtcgct cacggtcaat ttcgtcggcg ccgtgtcgga aggccgcctc accatcgagg
     2641 cccgccgcac cggcggcggc aagaccatct tcttcgccga aggcaacgtc cgcgacgccg
     2701 tcggcaatct gatcgcgacg gcgaccggca gcttccgcta catcacgcgg aattaggcgg
     2761 gcggtgacac gggcgcctac gtcgcgggag gctgcagcag gaggtccgcg agcgcctcgc
     2821 tgatcggcag gcccgtctca atctcgatga agaggtactg cccgtcggga ttgacttcaa
     2881 ggaaataggg cacgccgtta cggtcgcagc gcaaatcgta cgcgccgtag atgaggcctg
     2941 cctcacggtg gaactgcagc aggcgctcct ccagccctcg cgggagctcg gccgcctccg
     3001 ccttccggct gaaatgcagg cggacatcga cgggatacgg cgcgtcggag aggtccacct
     3061 tggcggcgaa gacccgggtg ccgatcaccg taacgcggta ctcggtcgtt ccatcgacat
     3121 actcctgcag cagcacgggg cagagcgcga tcgacgagag atccggaagg tcgccggcct
     3181 ccagaaggcg ggattcgata agtcgaaagc gccagctcgc gatcgacttc gtgacggcgc
     3241 gcccatgatg gaagacgaag cggcgcgcct cctccggatc gttggtgacg agcgtcctcg
     3301 gaaccctgag ccggcagcgg tgggcaagct ggagctggaa cggtttgtga tcgacgaggc
     3361 ggttgcggga aggagagttc accgtcagcc gagcgttccc gc
//
LOCUS       DASQWN010000243         3004 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1331963, whole genome shotgun sequence.
ACCESSION   DASQWN010000243 DASQWN010000000
VERSION     DASQWN010000243.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 3004)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3004)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3004
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1331963"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            32..538
                     /gene="ssb"
                     /locus_tag="VE686_04620"
     CDS             32..538
                     /gene="ssb"
                     /locus_tag="VE686_04620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020092725.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003697 - single-stranded DNA binding
                     [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA];
                     GO_process: GO:0006351 - DNA-templated transcription
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded DNA-binding protein"
                     /protein_id="HYY83768.1"
                     /translation="MAGSVNKVILVGNLGKDPETRRLNSGDPVVNLRIATSENWKDKA
                     TGERKEKTEWHNVVIFNENLARVAEQYLRKGSKVYIEGQLQTRKWTDQSGQEKYTTEV
                     VLQRFRGELTILDGRGGGEMSDDAGGSSRGEFGRSSPMEKRPAMAGAGSGGGGSRYAS
                     DLDDDIPF"
     gene            553..1227
                     /locus_tag="VE686_04625"
     CDS             553..1227
                     /locus_tag="VE686_04625"
                     /EC_number="6.3.1.14"
                     /inference="COORDINATES: protein motif:HMM:TIGR00290.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diphthine--ammonia ligase"
                     /protein_id="HYY83769.1"
                     /translation="MTAAVSWSGGKDCCLAMHRARAAGLEVRTLLAMFDESGERTRSH
                     AIPREVMQAQGEALGMELVAPSASWGDYEGVFVEALKGLKARGVGDVVFGDIDLQPHR
                     DWEEKVCAAAGVLAHLPLWQEDRDKLAREVLERGYRPLVVCTDDRYLDATWCGRPYDA
                     AYVASLPPGVDACGENGEFHTFVTDGPLFRFPVRAAVAAVDTRELAFGDKTYLYHYAR
                     LTLGDA"
     gene            1327..2424
                     /locus_tag="VE686_04630"
     CDS             1327..2424
                     /locus_tag="VE686_04630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008131805.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M20 family metallopeptidase"
                     /protein_id="HYY83770.1"
                     /translation="MVAEISRWSSIESPTRDAAGVNRMMDLVATSAADAPIAVERMPG
                     KEGLGDSLVLRAGPQRDDGAILVMSHLDTVHPVGTAAGDLPVRVEGNRLYGPGVYDMK
                     GGACLAFEAFKAAARAGGLKRPVVYLMTPDEEIGSPTTRRPIEDFARRAAFALVTEPA
                     RDGGKVVTGRKGVGRFEAHVEGRPAHSGSRHEDGRSAIREAAHQILAVEGLTDYAKGV
                     TTTVGLISGGTAANVIPQHCRFEIDLRVVTAADGEDYAARIRGLKARDPDVRVTIQGG
                     MNRPPYERSEATGALFEHARREAAGFGVDLEEVRRTGGGSDGNFTAALGVPTLDGLGI
                     DGDGAHTLHEYGLISSIAPRMRLMRRLLETL"
     gene            complement(2462..>3004)
                     /locus_tag="VE686_04635"
     CDS             complement(2462..>3004)
                     /locus_tag="VE686_04635"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY83771.1"
                     /translation="AAALPDHHRHPALAALGPDVRAPAGRLAEAQALARLWRDDKTFA
                     ETVYNREINFGLEANGAAVPFLATAILAEEAAEAVRARGIALRHVTTLDVVDHFTPRL
                     GLAPARGLKLFLDPHRTIGPLPPDEAARYLAPVDGVFERTCAAPGYVAWLSDTFRPAL
                     AQGFEPIPLTPCWILHRRRG"
BASE COUNT          472 a         1024 c         1113 g          395 t
ORIGIN      
        1 agaacggcgg ggagaagcgg gagaggctcc catggcaggt agcgtcaata aagtcatttt
       61 ggtcggcaat ctcggcaagg accccgagac gcgccggctc aattccggcg atccggtggt
      121 caacttgcgc atcgccacgt ccgagaactg gaaggacaag gcgaccggcg agcgcaagga
      181 gaagaccgag tggcataacg tcgtgatctt caacgagaat ctggcccggg tcgcggagca
      241 gtacctgcgc aaggggtcca aggtctacat cgaaggccag ttgcaaacgc gcaaatggac
      301 cgaccagtcg ggccaggaga aatacacgac cgaggtggtg ctgcaacgct tccgcggcga
      361 actcacgatc ctcgacggcc gcggcggcgg cgagatgagc gacgacgctg gcggctcgag
      421 ccgcggcgaa ttcggccgct cctcgccgat ggagaagcgc ccggccatgg ctggtgccgg
      481 cagtggggga gggggctcgc gctacgccag cgacctcgac gacgacatcc cgttctagcg
      541 gtctgatcca tcgtgaccgc ggctgtctcg tggagcggcg gcaaggattg ctgcctcgcc
      601 atgcaccggg cgcgggccgc ggggctggag gtccgcactc tccttgccat gttcgacgag
      661 agcggcgagc gcacgcggtc gcatgcgatc ccgcgggagg tgatgcaggc tcaaggagag
      721 gcgctcggca tggagctcgt cgcgccgagc gccagctggg gcgactatga gggcgttttc
      781 gttgaggcgc tgaaaggcct gaaagcgcgt ggcgtcggtg acgtcgtctt cggcgacatc
      841 gacctgcagc cgcatcgcga ttgggaggag aaggtgtgcg ccgcggccgg cgtcctggcg
      901 catctgcccc tgtggcagga ggaccgggac aagctcgcgc gcgaggtgct cgagcgcggc
      961 taccgccccc tcgtggtgtg cacggacgac cgctacctcg atgcgacctg gtgcggccgc
     1021 ccgtacgacg ccgcctacgt ggcgagcctg ccgcccggcg tcgacgcctg cggcgagaac
     1081 ggcgagtttc acaccttcgt caccgacggg ccgctgttcc gctttcccgt ccgggccgcc
     1141 gttgcggccg tcgacacgcg cgagctcgcc ttcggcgaca agacgtacct ttaccactac
     1201 gcccgcctca cactcggcga cgcttgacct cgcgcggctg aacgccgaca ccgcggcccg
     1261 agcagccgaa aaggcgctgc acgcgaccag ggagagtgcc tcgtgaccga gcccacgatc
     1321 gacgcgatgg tggccgagat ctcgcgctgg agttcgatcg agagccccac gcgcgatgcc
     1381 gccggcgtga accggatgat ggacctcgtt gcgacctcgg cggccgatgc gccgatcgcg
     1441 gtcgagcgca tgcccggcaa ggagggtctg ggagacagcc tcgtcctgcg cgccgggccg
     1501 cagcgcgacg acggcgcgat cctcgtgatg tcccatctcg acaccgtgca ccccgtcggc
     1561 acggcggcgg gcgacctgcc cgttcgcgtc gagggcaatc ggctctacgg cccgggcgtc
     1621 tacgacatga aggggggagc ctgcctcgcc ttcgaggcgt tcaaggcggc ggcgcgggcg
     1681 ggcgggctca agcgccccgt cgtctacctg atgactcccg acgaggagat cggcagcccg
     1741 acgacgcgcc ggcccatcga ggatttcgcc cgccgcgccg ccttcgccct cgtcaccgag
     1801 ccggcgcgcg acggcggcaa ggtggtcacc gggcgcaagg gcgtcgggcg cttcgaggcg
     1861 cacgtggaag gccgcccggc gcactccggc tcgcgccacg aggacgggcg cagcgccatc
     1921 cgcgaggcgg cgcaccagat cctcgccgtc gagggcctga ccgactacgc gaagggcgtc
     1981 acgaccacgg tcggcctgat ctcgggcggc accgcggcga acgtcatccc gcagcactgc
     2041 cgcttcgaga tcgacctgcg ggtcgtcacg gcggccgacg gcgaggacta cgcggctcgt
     2101 attcgcggcc tgaaagcacg cgatcccgac gtgcgcgtca ccatccaggg cggcatgaac
     2161 cggccgccct atgagcgctc cgaggccacc ggcgcgctct tcgagcacgc gcgacgcgag
     2221 gccgccggct tcggcgtcga cctcgaggag gtgcggcgaa cgggcggcgg ctcggacggc
     2281 aacttcaccg cggcgctcgg cgtcccgacc ctcgacggcc tcggcatcga cggcgacggc
     2341 gcccacaccc tgcacgaata cggcctcatc tcctcgatcg cgccgcgcat gcggctcatg
     2401 cgccgcctgc tcgagaccct gtaaggggcg accccttctg agggggaggg gaaggcctgc
     2461 gtcacccgcg gcggcggtgg aggatccagc agggggtgag cgggatcggc tcgaaaccct
     2521 gcgccagggc gggccgaaag gtgtcgctga gccacgcaac gtagccgggc gccgcgcagg
     2581 tgcgctcgaa cacgccgtcc accggggcga ggtagcgcgc ggcttcatcc ggcgggagcg
     2641 ggccgatcgt gcggtgcggg tcgaggaaga gcttgagccc acgcgcgggc gcgaggccga
     2701 gccgcggcgt gaagtggtcg acgacgtcga gggtcgtgac gtgccggagc gcgatgccgc
     2761 gcgcacgcac cgcttcggcc gcctcctcgg cgaggatggc ggtggcgagg aagggaacgg
     2821 cggcgccgtt cgcctcgagg ccgaagttga tctcgcggtt gtagaccgtc tcggcgaagg
     2881 ttttgtcgtc gcgccacagc cgggcgagcg cctgcgcctc ggcaagccgc ccggcaggcg
     2941 cgcgcacgtc ggggcccagg gcagcgaggg ccggatgacg gtgatggtcc ggcagcgccg
     3001 cggc
//
LOCUS       DASQWN010000244         4160 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1430948, whole genome shotgun sequence.
ACCESSION   DASQWN010000244 DASQWN010000000
VERSION     DASQWN010000244.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 4160)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4160)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4160
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1430948"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1249)
                     /locus_tag="VE686_04640"
     CDS             complement(<1..1249)
                     /locus_tag="VE686_04640"
                     /EC_number="6.1.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018263492.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000049 - tRNA binding [Evidence IEA];
                     GO_function: GO:0004824 - lysine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006430 - lysyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lysine--tRNA ligase"
                     /protein_id="HYY83772.1"
                     /translation="MTKPLSLDPELAHAAQSAAAWPFEEARKLVARLERTGKSEAVFE
                     TGYGPSGLPHIGTFGEVARTSMVRHAFRVLTGDRVPTRLVAFSDDMDGLRKVPDNVPN
                     QELLAQALGRPLTKVPDPFGTHPSFGEHNNAELRRFLDAFGFDYEFLSATECYRSGRF
                     DAALMTVLERYDAVMEIMLPSLREERQQTYSPFLPLHPATGEVMQVPLEEVRREAGTI
                     VWRDPKTGERFETPVTGGHAKLQWKPDWAMRWVALGIDYEMAGKDLIDSVKLSGEIAR
                     ALGAEPPEGFNYELFLDERGQKISKSRGNGLTIDDWLAYGTPESLSLFMYNKPREAKR
                     LFFDVIPRQVDDYLTFLEKFPGQDWKTKLGNPVWHIHAGAPPAPELVASAAGAAGTTL
                     SFSMLLNLVAVANSEEPAVLWGFI"
     gene            1429..1734
                     /locus_tag="VE686_04645"
     CDS             1429..1734
                     /locus_tag="VE686_04645"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY83773.1"
                     /translation="MDKQRISNLKAVANLMPPKPYSLRVTCDVVANKGQTAELVKATP
                     QGTNPTILILDVVIHGRGGEPATIAATYEDRNYDDQYEEVTARSGSESQTVRVERVH"
     gene            complement(1775..2590)
                     /locus_tag="VE686_04650"
     CDS             complement(1775..2590)
                     /locus_tag="VE686_04650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015929486.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transporter substrate-binding domain-containing
                     protein"
                     /protein_id="HYY83774.1"
                     /translation="MAACVAAVVSALPAFAQGVAIPNFWDPRATLDRPDVPTTRTVRF
                     LTDDEFPPLHFAGPDGVPTGFSVELARAACERLALACTVQVRRFDTLLDALAEGRGDV
                     VVAAIPTTATLRQRFTTTRPYFRTPARFAVRRDRNAPEPDHKALEGRTVAVVTGTAHE
                     AYLRTFFPSATAKPLADLAAVQAALRDGDADYAFADGLSLAVWIGGTQSGDCCAFTGG
                     PYLESRFFGEGIAFVLRNEDENLRRAFDFALQRLRDEGKYAEIYLRFFPIGVF"
     gene            2705..>4160
                     /locus_tag="VE686_04655"
     CDS             2705..>4160
                     /locus_tag="VE686_04655"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF025025.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HYY83775.1"
                     /translation="MTIEGQAAEIVARAQPPHPAEIAFLAAHGVPHPVLRQASALAAR
                     AGVTADVALLRHGLVDEDRFYRALAATLGLPFLDDMLLDSRVSFPASIVAGVVPLRHG
                     AGPRFALAPAGESLRRLLAQPVRGLAITTPAALRRAVFEARGPAIAAQAAHALPYLKP
                     EHSYRDGSSPGQIATLLAAVAALSAGAAHGSSLIMPALALLATPVFLAMVVLRLAAAR
                     EPIATAPVRPPQRLPDRLLPVYTVLIPLYRERRVVQQIVAAVAALDYPSAKLDVKLIL
                     EADDRDTREAVGRMTLPGFVEVIVAPAGEPRTKPRALNVALPLARGEFTVIYDAEDIP
                     DPGQLRLAVATFARHPADVVCLQARLVIDNTRDNWLTRLFTIEYAALFDVINPGLAAL
                     RCPVPLGGTSNHLRTAVLKGAGGWDAWNVTEDADLGIRLALLGYRVADLPSSTLEEAP
                     GRPGAWMRQRARWMKGFLQVCVTHSRHPWRALRLL"
BASE COUNT          620 a         1424 c         1486 g          630 t
ORIGIN      
        1 ggatgaaccc ccagagcacg gccggctcct cggagttcgc caccgcgacg aggttcagca
       61 gcatggagaa cgacagcgtg gtaccggcag cacccgcggc gctggcgacg agctcgggcg
      121 cgggcggcgc gccggcgtgg atgtgccaca ccgggttgcc gagcttggtc ttccagtcct
      181 ggcccgggaa cttctcgagg aacgtcaggt agtcgtcgac ctggcgcggg atgacgtcga
      241 agaacaggcg cttcgcctcg cgcggcttgt tatacatgaa cagcgagagg ctctcgggcg
      301 tgccgtaggc gagccagtcg tcgatggtga gcccgttgcc cctggacttc gagatcttct
      361 ggccgcgctc gtcgaggaag agctcgtagt tgaagccctc cggcggctcg gcgccgagcg
      421 cccgggcgat ctcgcccgac agcttcaccg agtcgatgag gtccttgccg gccatctcgt
      481 agtcgatgcc gagggcgacc cagcgcatgg cccagtcggg cttccactgc agcttggcgt
      541 ggccgcccgt gaccggcgtc tcgaagcgct cgcccgtctt cgggtcgcgc cagacgatgg
      601 tgccggcctc gcgccgcacc tcttcgaggg gcacctgcat gacctcgccg gtcgccggat
      661 gcagcggcag gaacggcgag taggtctgct ggcgctcctc gcgcaaggac ggcagcatga
      721 tctccatgac ggcgtcgtag cgctcgagca cggtcatgag cgccgcgtcg aagcggccgg
      781 agcggtagca ctcggtggcg gagaggaact cgtagtcgaa gccgaaggcg tcgaggaagc
      841 ggcgcagctc cgcgttgttg tgctcgccga agctcgggtg cgtgccgaac gggtccggca
      901 cctttgtcag cgggcggccg agcgcctgcg ccagcagctc ctggttcggc acgttgtcgg
      961 gcaccttgcg caggccgtcc atgtcgtccg agaaggcgac gaggcgggtc ggcacgcgat
     1021 cgcccgtgag cacccggaag gcgtgccgca ccatggaggt gcgcgccacc tcgccgaagg
     1081 tgccgatgtg cggcagcccg gagggcccgt agccggtctc gaacaccgcc tcgctctttc
     1141 ccgtccgttc gaggcgcgcg acaagcttgc gcgcctcctc gaacggccac gcggcggcgc
     1201 tctgcgcggc gtgcgcaagc tcgggatcga gggagagagg cttcgtcatg acgcaagcgc
     1261 ttcacggccg cggggcggct ttgagggaag cgcggcaccg tagggacgcg ggtggcgagg
     1321 gtcaatgaat ggcgagggcc atcgcgataa gttgcattgg cccatatcgg caactttgca
     1381 tcggccgggt actgcattac gctgcgttgt cccctgggag gcagagccat ggacaagcag
     1441 cgcatctcaa acctcaaggc cgtcgcgaac ctgatgccgc cgaagcccta ctcgcttcgc
     1501 gtgacctgcg acgtggtcgc gaacaagggc cagacggcag agctcgtcaa agcgaccccg
     1561 cagggcacaa atccgacgat cctgatcctg gatgtcgtga tccacggccg gggcggcgag
     1621 ccggccacca tcgcggccac atacgaggat cggaactacg acgaccagta cgaggaggtc
     1681 acggcccgct caggcagcga gtcgcagacg gtgagggtgg agcgggtcca ttaggtctcg
     1741 cgccgggccc ttcgagcgtt agcaggagcg tcagtcagaa cactccgatc gggaagaagc
     1801 gcaggtagat ctcggcgtac ttcccctcgt cgcgcaggcg ctgcagggcg aagtcgaagg
     1861 cgcggcgcag gttctcgtcc tcgttgcgga gcacgaaggc gataccctcg ccgaagaacc
     1921 ggctctcgag atacggccct cccgtaaagg cgcagcagtc gcccgactgc gtcccgccga
     1981 tccagacggc gagcgaaagg ccgtcggcaa aggcataatc ggcgtcgccg tcgcgcaggg
     2041 cggcctggac ggctgccaga tcggcaagcg gcttcgcggt ggcggaggga aagaaggttc
     2101 tgagataggc ctcgtgcgcg gtgccggtaa cgaccgcgac ggtgcggccc tcgagcgcct
     2161 tgtggtccgg ctcgggggcg ttgcggtccc ggcgcacggc aaagcgggcg ggcgtgcgga
     2221 agtacggtcg cgtggtggtg aagcgctgcc gcagggtggc ggtcgtcggg atcgccgcca
     2281 cgaccacgtc gccgcgccct tcggcgaggg cgtcaaggag cgtgtcgaac cggcgcacct
     2341 ggacggtgca ggcgagcgcg aggcgctcgc aggcggcgcg ggcgagctcg accgagaagc
     2401 ccgtcggcac cccgtcgggg ccggcgaagt gcagaggcgg gaattcgtcg tcggtgagga
     2461 atcgcacggt gcgcgtggtc ggcacgtccg gccggtcgag ggtcgcgcga gggtcccaga
     2521 agttcgggat cgcgacgccc tgcgcgaaag cgggcaaagc cgacacgact gcggcgacgc
     2581 acgcggccaa gcaccagacg agccgccccg cagcttctcg cagctgccgg ttgtcgaacc
     2641 gcttgcattt gatctgcaac tgcatttctc tttcgggtga ggctcgcgtc cggagctacg
     2701 ctcgttgacg attgagggtc aagccgctga gatcgtcgcg agggcgcagc cgccgcaccc
     2761 cgccgagatc gcgttcctgg ccgcgcacgg cgtaccgcac cctgtcctgc gccaagcgag
     2821 tgcgctggcc gctcgcgcgg gcgtcacggc cgacgtcgcg ctcctgcgcc acggcctcgt
     2881 ggacgaggat cgcttctatc gcgcgctcgc cgccacctta ggactgccgt tcctcgatga
     2941 tatgcttctc gacagccggg tcagcttccc tgccagcatc gttgcggggg tcgtgcctct
     3001 gcggcacggc gcagggccgc ggttcgcgct cgcgccggcg ggcgagagcc tgcggcgcct
     3061 tctcgcgcaa cccgttcgcg gccttgcgat cacgaccccg gcggcgctcc gccgcgccgt
     3121 gttcgaggcg cgagggccgg cgatcgcagc gcaggccgcg cacgcccttc cgtacttgaa
     3181 gcccgagcat tcctatcggg acggcagctc gccggggcag atcgcgaccc tcctcgccgc
     3241 cgtagcggca ctctcggccg gcgcggccca tggatcgtcc ttgatcatgc ccgcgctcgc
     3301 tctcctggcg acacccgtgt tcctcgcgat ggtggtgctt cggctcgcag cggcgcggga
     3361 gccgatcgcg acagcgccgg tacgcccgcc gcagcgcctg cccgaccggc tgctcccggt
     3421 ctacacggtc ctgatcccgc tctaccgcga gcgccgggtc gtgcagcaga tcgtcgccgc
     3481 cgtcgcggct ctggactacc cgagcgccaa gctcgacgtg aagctcatcc tggaggcgga
     3541 cgaccgcgac acccgcgagg ccgttggccg catgaccctg cccggcttcg tggaggtgat
     3601 cgtcgcgccg gccggggagc cgcggacgaa gccgcgggcg ctcaacgtcg ccctgcctct
     3661 cgcgcgcggc gaattcaccg tcatctacga cgccgaggac atccccgacc cgggccagct
     3721 caggctcgcg gtcgccacct tcgcgcgcca ccccgccgac gtggtgtgtc tgcaggcgcg
     3781 cctcgtgatc gacaacacgc gcgacaactg gctgactcgc ctgttcacca tcgaatacgc
     3841 cgcgctgttc gacgtcatca acccggggct tgcggcgctg cgctgcccgg tgccgctcgg
     3901 cggaacctcc aaccatctcc gaacggccgt gctcaagggc gccggcgggt gggacgcctg
     3961 gaacgtcacg gaggacgcgg atctcggcat ccggctcgct ctgttgggtt accgtgtcgc
     4021 cgacctgccc tcgtcgacgc tcgaggaagc gccggggcgg ccgggcgcgt ggatgcggca
     4081 gcgggcgcgg tggatgaagg gtttcctcca ggtgtgcgtc acccattccc gccacccctg
     4141 gcgtgcgctc cggttgctcg
//
LOCUS       DASQWN010000245         5459 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_318194, whole genome shotgun sequence.
ACCESSION   DASQWN010000245 DASQWN010000000
VERSION     DASQWN010000245.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 5459)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5459)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5459
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_318194"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..438
                     /locus_tag="VE686_04660"
     CDS             <1..438
                     /locus_tag="VE686_04660"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015927191.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HYY83776.1"
                     /translation="DIAWPDNVERIEHVPPSEHPDFYAASRFTLNVTRADMIRAGYSP
                     SVRLFEAGSCATPIVSDLWDGIETLLEPGREIVLSDTADDVLRTLLGMSEPQRLAMAA
                     AARRRVLAEHTAEHRAQQLERYLGEARKKAEQPRRATVGAATA"
     gene            557..1585
                     /locus_tag="VE686_04665"
     CDS             557..1585
                     /locus_tag="VE686_04665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012605342.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-glucuronic acid decarboxylase family
                     protein"
                     /protein_id="HYY83777.1"
                     /translation="MKNGKGKLVLVAGGAGFLGSHLCDALLARGDHVIALDSFLTGRR
                     QNVRHLEREPRFELVEADVINPLPPRLKATKAKVDRIFNLACAASPPHYQANPEHTLL
                     TSVIGTHNLLTLAERTGARFLLASTSEIYGDPEVHPQKETYWGHVNPTGPRACYDEGK
                     RSAETLSFDFERANRVEVRVARIFNTYGPRMRADDGRVVSNVICQALSGDAITVHGDG
                     SQTRSFCYVSDLVDGLMRLMNHDGPMPGPVNLGNPNEMTVSELVSRVLALTESRSPVV
                     RKPLPVDDPRRRRPDIARATNLLGWAPKTTLETGLKATITWFADEADRAGARPAGKHP
                     ALDGVVPA"
     gene            1566..2174
                     /locus_tag="VE686_04670"
     CDS             1566..2174
                     /locus_tag="VE686_04670"
                     /inference="COORDINATES: protein motif:HMM:NF012982.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008138 - protein
                     tyrosine/serine/threonine phosphatase activity [Evidence
                     IEA];
                     GO_process: GO:0016311 - dephosphorylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dual specificity protein phosphatase family
                     protein"
                     /protein_id="HYY83778.1"
                     /translation="MASSRPETLPHTGPHGDTPAATEGAETWRPNLSWITDRLAVGGS
                     FPGPRAADLAHRHRIRAIVDLRVEACDDAQEVERHGMAFLHLPTEDHCAVTAAMLDEG
                     VAFANRHMDRGERVLVHCEHGIGRSATLALSVLVSRGHAPLEALELAKTRRALVSPSP
                     AQYEAWAAWLAAWQARSAASWNIPDFDAFKAIAYRHLAPDAR"
     gene            2174..3931
                     /locus_tag="VE686_04675"
     CDS             2174..3931
                     /locus_tag="VE686_04675"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY83779.1"
                     /translation="MLVYGDAVQTEDPRAMLARILEGAERASAMARGIERHGALAAVF
                     IEAGKLVQGIADADFAEQQRDAPSPAQSAAMALLLRLAGALRQSWDSGFKGPLAAVTA
                     PELAGLTLPEQIEVRHPEGYAFYALYPESYIEAAKGLCGGAAPTVIGIRSIGTGLAAL
                     VASVLGAEPPLTVRPVGHPFRRELSLSPELAEAILLRRDGTYAIVDEGPGLSGSSFGA
                     VVDFLEDAGVPRERIHVFPSHPGELGPQASSAHRERWARLARHCVVFDTLALETPTPE
                     HALSRWIEHLVGPLTAPLEDLSGGAWRAGAFASEAEWPAVNVQQERRKFLAQTDGGTY
                     LVKFAGLGEDARKVARARLLGEAGFTAPVVGHRHGFLVERWLSDARPLDPTHVDRRRL
                     VETVGSYLAFRAQHFPATRRQGASLAKLVEMARHNAARALGPAAAERLDAMMRNVAAL
                     EEEVRPIEVDGRMHPWEWLVRRDGALLKTDALDHHAAHDLVGCQDVAWDVVGAAVELG
                     LTPSEREAVCTIVAGATRRPVSPALLRIYEPCYLAFHMGACALGRDALMGFVRESARL
                     DLRRQSYAKALQRALSPHP"
     gene            4284..5366
                     /locus_tag="VE686_04680"
     CDS             4284..5366
                     /locus_tag="VE686_04680"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="lytic transglycosylase domain-containing
                     protein"
                     /protein_id="HYY83780.1"
                     /translation="MNVSSSGIAFAPAVAHTAGEPLRAIELPSVLPVERAPIEIGREL
                     GTMLFADGDVDDDDDDGEPVLPAVEVVARAPIPITAEGAPILAALRAYARPVTVPPDV
                     DLLQLRPTLDTSGPTPADESADQGRDPNELVQFGAMSVPRGVVEMIVRAAAVTDVDPV
                     YMMALADKESSFSTDVRARTSSAEGLFQFVTKTWLSVVRTFGAKHGLADEAAAIELVD
                     GQPTIKDDATRERVLGLRRDPYLSAVMAAEMMKRDRAAIERRIGRDLNRSEFYLAHFL
                     GAEGAGKLMALVDEKPKQSAPRVFREAAKANRTLFFARQGKRMKDLTVAQVYDKLDQM
                     IDYRISRYSEVTRVITVSDIDTRSPM"
BASE COUNT          849 a         1968 c         1829 g          813 t
ORIGIN      
        1 gacatcgcct ggcccgacaa cgtcgagcgg atcgagcatg tcccgccgag cgagcacccc
       61 gatttctatg cggcgagccg cttcacgctc aacgtcaccc gggccgacat gatccgggcg
      121 ggctacagcc cgagcgtgcg cctgttcgag gccggctcct gcgcgacgcc gatcgtctcg
      181 gacctgtggg acggcatcga gacgctgctc gagcccgggc gcgagatcgt cctgagcgac
      241 acggccgacg atgtgctgcg gaccctcctc ggcatgtcgg agccgcagcg gctcgcgatg
      301 gcggcggctg cgcgacggcg ggtgctcgcg gagcacacgg ccgaacaccg ggcgcagcag
      361 ctcgagaggt acctcggtga ggctcgcaag aaagccgagc agccccggcg ggcaaccgtc
      421 ggcgccgcca cggcgtagct caaaggaaag cagtctttct acgagaagcg aaaccaacaa
      481 caagctgtcc gcgttgagga acaaagatcc tgacgtgacg gcgagctcct ccagccaagg
      541 tgaaggaacg aacgcgatga aaaacgggaa aggcaagctc gtcctcgtcg ctggtggcgc
      601 cggcttcctg ggttcccacc tctgcgacgc cctgttggcg cggggcgacc acgtaatcgc
      661 gctcgacagc ttcctgacgg gacgcaggca gaacgttcgt cacctcgagc gggagccgcg
      721 cttcgaactc gtcgaggcgg acgtcatcaa ccctctcccg ccgcgactga aggccaccaa
      781 ggccaaggtc gaccgcatct tcaacctcgc ctgcgcggcg tccccgcccc actaccaggc
      841 caaccccgag cacacgctgc tcacgagcgt cataggaacc cacaacctgc tcacgctggc
      901 agagcgtacc ggcgcgcgct tcctgctcgc ctctaccagc gagatctacg gcgatcccga
      961 ggtccacccg cagaaagaga cctactgggg ccacgtgaac ccgactggac cgcgcgcctg
     1021 ctacgacgag ggcaagcgct ccgccgagac gctgagcttc gacttcgagc gcgccaaccg
     1081 cgtcgaggtg cgcgtggcgc gcatcttcaa cacctacgga ccacgcatgc gggccgacga
     1141 cggccgcgtc gtctccaacg tgatctgcca ggccttgtcg ggcgacgcca tcacggtgca
     1201 cggagacggc agccagaccc gctcgttctg ctacgtctcg gacctcgtgg acgggctgat
     1261 gcgcctcatg aaccatgacg gccccatgcc cgggcccgtg aatctcggga acccgaacga
     1321 gatgacggtg tcggagcttg tctcccgcgt gcttgcgctc acagaatcgc gctcgcccgt
     1381 ggttcgcaag cccctccccg tcgacgaccc gcgacggcgg cggccggaca tcgcccgggc
     1441 caccaacctg ctcggctggg cgccaaagac cacgctcgag accggcctca aggccaccat
     1501 cacgtggttc gcagacgagg ccgatcgcgc cggcgccagg ccggcgggca aacacccggc
     1561 tctcgatggc gtcgtcccgg cctgagacgc tgcctcacac tgggccgcac ggcgacaccc
     1621 cagcggccac tgagggcgcg gagacatggc gccccaacct gagctggatc acggaccgtc
     1681 tcgccgtcgg cggcagcttt cccggccccc gggccgccga cctggcccac cggcatcgga
     1741 tccgcgccat cgtcgatctg cgcgtcgaag cgtgcgacga tgcgcaggag gtcgagcgcc
     1801 acggcatggc cttcctccat ctcccgactg aggatcattg cgcggtgacc gcggccatgc
     1861 tcgacgaggg ggtcgcgttc gcgaaccgtc acatggaccg cggcgagcgc gtcctcgtcc
     1921 actgcgagca cggcatcggc cgctcggcga cactggccct gtcggtgctg gtaagccggg
     1981 gccacgcccc cctcgaggcg ctcgagctgg cgaagacgcg ccgcgccctt gtctcgccga
     2041 gcccggcgca atacgaagcc tgggccgctt ggctggccgc ctggcaagca cgctccgccg
     2101 cgtcctggaa catccccgat ttcgatgcct tcaaggcgat cgcgtaccgg catctcgcgc
     2161 cggatgcgcg ctgatgctcg tctatggcga cgcggtgcag acggaggacc cccgcgccat
     2221 gctggcgcgg atcctcgaag gcgcggaacg tgcgtccgcc atggctcggg gcatcgagcg
     2281 tcacggcgcg ctcgcggccg tgttcatcga ggccggcaag ctcgttcagg ggatcgccga
     2341 cgctgatttc gcggagcagc agcgcgatgc gccctccccc gcacagagcg ccgcgatggc
     2401 gctcctcctg cgcctcgccg gcgcattgcg gcagtcttgg gatagcggct tcaaggggcc
     2461 gctcgcggcg gtcacggccc cggagctcgc aggcctgacc ctgccggagc agatcgaagt
     2521 caggcatccc gagggctacg cgttctatgc cctctatccc gagagctaca tcgaggcggc
     2581 gaaaggcctg tgcggtggcg cggcaccgac ggtgatcggg atccgcagca tcggcacggg
     2641 cctggccgcg ctcgtcgcct cggtgctcgg ggcggagccg cccctcacag tccgccccgt
     2701 cgggcatccg ttccggcgcg agctgtcgct ctcgcccgaa ctggcggagg cgatcctgtt
     2761 acgccgcgac ggcacctacg ccatcgtcga tgaagggcct ggactgtccg gcagctcctt
     2821 cggcgcggtg gtcgacttcc tcgaggacgc cggcgttccg agggagcgca tccacgtctt
     2881 cccgagccac cccggcgagc ttgggccgca agcgagctca gcgcatcggg agcgctgggc
     2941 gcggctggcg cggcactgcg tggtcttcga taccctggcc ctcgaaacgc cgacgccgga
     3001 acacgccctg agccgctgga tcgagcacct cgtcggcccg ctcacggctc ctctcgagga
     3061 tctctccggc ggggcatggc gtgcgggcgc cttcgcctcg gaagccgagt ggccggccgt
     3121 caacgtgcag caggaacggc gcaagttcct cgcgcagacg gacggcggca cctacctggt
     3181 gaaattcgcg ggcctcggcg aggacgcgcg caaggtggcg cgcgctcgtc tcctgggcga
     3241 ggccgggttc acagcgccgg tcgtcggaca ccggcacggc tttctggtgg agcgctggct
     3301 ctccgacgcg aggcccctcg atcccacgca cgtggaccgc cggcgcctcg tcgagacggt
     3361 cggcagctat ctcgcgttcc gcgcgcagca ctttccggcg acgcgacgtc agggcgcgtc
     3421 gctcgcgaag ctcgtcgaga tggcccgcca caacgcagca cgggcgctcg gacccgccgc
     3481 cgccgagagg ctcgacgcca tgatgcgcaa tgttgcggca ctcgaggaag aggtgcggcc
     3541 gatcgaagtg gacgggcgca tgcacccctg ggaatggctc gtgcgccggg acggcgccct
     3601 tctgaagacc gatgcgctcg accaccatgc cgcgcacgac ctcgtgggct gccaggacgt
     3661 cgcgtgggac gtggtcggcg ccgccgtgga gctcgggctg acgccgtcgg agcgcgaggc
     3721 tgtctgcacc atcgtcgcgg gtgccactcg acgtcccgtc tcgccggcgc tgctgcggat
     3781 ctacgagccc tgctatctcg ccttccacat gggcgcttgt gcactgggac gcgacgctct
     3841 catgggattt gtccgggaat cagccaggct cgaccttcgt cggcagagct acgccaaggc
     3901 cctgcagcgc gccctttcgc cccacccctg acgggacccg cgcgcctctg gtggccggtc
     3961 cagccgcggc gttccgggcc gggtgcatat ggccacgctg acccattctc aacacatccg
     4021 ggcttcagga gggcccccgc attcgcacaa cgaatcgtca ggggccgcca gcacgggcga
     4081 accgagcggc ggcacgaaga agggggcttc tccgaatgaa cttttccgcg atgcgttctc
     4141 gcgcgcctat tcgcccggcc gagctgtgcc cggacgaggt ccattggctc gcccggggcg
     4201 aactcagaaa gaacgcgcct cgcggtttcg ggttccgctc acgggcgctt cgattttcgg
     4261 ccgccatctg cgccggggtc gcgatgaacg tctcctcttc cggcatcgcc ttcgcgccgg
     4321 ccgtcgcgca tacggccggc gagccgctgc gtgcgatcga gcttccttct gtgctcccag
     4381 tcgagcgagc cccgatcgag atcggccggg aactcggaac gatgctgttc gccgatggcg
     4441 atgtcgacga cgacgacgat gacggcgagc cggtgctgcc cgccgtcgag gtggtcgcgc
     4501 gggcgcccat tccgatcacg gcggaggggg caccgatcct tgcagcgctc cgggcctacg
     4561 cgcgccctgt caccgttccc cccgatgttg atctcttgca gctccgcccg acgctcgaca
     4621 cctcgggccc aacgcccgcc gacgagagcg ccgaccaggg ccgcgatccg aacgagctgg
     4681 tgcagttcgg agcgatgagc gtcccgcgcg gcgtggtcga aatgatcgtg cgtgccgcgg
     4741 cggtgaccga cgtcgacccc gtctacatga tggccctggc ggacaaggaa tcgagcttct
     4801 cgaccgatgt ccgggcccgg acctcgtccg ccgagggcct gttccagttc gttaccaaga
     4861 cgtggctctc cgtcgtgcgc accttcgggg cgaagcacgg gttagcggac gaggctgcgg
     4921 ccatcgagct cgtggacggc cagccgacca tcaaggacga tgccacgcgc gagcgcgtgc
     4981 tcgggctgcg ccgcgacccc tatctctcgg ccgtcatggc ggcggagatg atgaagcgcg
     5041 accgcgcggc gatcgagcgc cgcatcgggc gcgacctcaa ccgctcggag ttctacctcg
     5101 cgcacttcct gggcgcggag ggcgccggca agctcatggc cctcgtcgac gagaagccga
     5161 agcagagtgc gccccgcgtc ttccgcgagg ccgccaaggc caaccggacg ctgttcttcg
     5221 cccggcaggg caagcgcatg aaggacctca cggtcgcgca ggtctacgac aagctcgacc
     5281 agatgattga ctaccgcatc agccgctaca gcgaggtgac gcgggtgatc accgtatccg
     5341 acatcgacac ccgttccccg atgtaggcgg cgcgacgcgg gcgcctgcta ctcgctcgct
     5401 ttcgtcttcg gcacgtaggc gccgttgccg tcgaagatgt aggccgtctt cacggtcgt
//
LOCUS       DASQWN010000246         2922 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1232851, whole genome shotgun sequence.
ACCESSION   DASQWN010000246 DASQWN010000000
VERSION     DASQWN010000246.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2922)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2922)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2922
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1232851"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..647)
                     /locus_tag="VE686_04685"
     CDS             complement(<1..647)
                     /locus_tag="VE686_04685"
                     /inference="COORDINATES: protein motif:HMM:NF013088.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HYY83781.1"
                     /translation="MLPRDFALLLVICLVWASNFVVAKLVLADLHIPPLFFSALRLGV
                     VLVAVCPWLLPVPRPVWRMIAVGLLMGAGSFGLMTIGLMTATPSSVAVVVQLGVPITT
                     LLSVALLGERIGWQRGLGITLTFVGAVAVMWDPAGFSLSVGLLFVVANAVCTSLGAVM
                     IKQMAGVRPLQFQAWVGLASVIPLGLLSILVEDDQMRLAREGGWAFAAAVAYTGLA"
     gene            810..1058
                     /locus_tag="VE686_04690"
     CDS             810..1058
                     /locus_tag="VE686_04690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015931068.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY83782.1"
                     /translation="MPRYFFHLRGPDIHVPDPDGADFADADEAWEAARRTARALMRTE
                     VEMEAEWLTCRFEILDEGGEIVFDLPFSEVLGDLDTQH"
     gene            complement(1075..1839)
                     /locus_tag="VE686_04695"
     CDS             complement(1075..1839)
                     /locus_tag="VE686_04695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018389672.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysophospholipid acyltransferase family protein"
                     /protein_id="HYY83783.1"
                     /translation="MTAATLARTRSPAVQRLRSRLFDVILVLWTAAFAPAALVLALLG
                     APERAVRRTARAWARGTLRLLGWCVGLTYVEEGLENIPSEPCLIVANHQSTWETLAFL
                     ALFPDIAIVAKRELLTIPVFAWFLRNAPMILIDRDSGTKAMRKMVDESRAALAGGRSV
                     LIFPEGTRRSVSAKIEFKRGIEILYSKLDAKVLTVALNSGHFWAPGEPYKRAGTITVD
                     YLAPIEPGLAGAEFTRRSQALLERARRNAFGELSPA"
     gene            complement(1836..2210)
                     /locus_tag="VE686_04700"
     CDS             complement(1836..2210)
                     /locus_tag="VE686_04700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009736407.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6481 family protein"
                     /protein_id="HYY83784.1"
                     /translation="MSFKDPGFGDRLASAANAKKAAFDKFRAKPAPDDPAVLKRQEER
                     AAIQAAREERARAREAARIKAEEEARLAQIALEARLKAEEEERLIREELEYIERKERE
                     AALEAEKKAARDARYAARKARR"
     gene            complement(2336..2545)
                     /locus_tag="VE686_04705"
     CDS             complement(2336..2545)
                     /locus_tag="VE686_04705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012335192.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005829 - cytosol [Evidence IEA];
                     GO_function: GO:0001072 - transcription antitermination
                     factor activity, RNA binding [Evidence IEA];
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0003723 - RNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cold-shock protein"
                     /protein_id="HYY83785.1"
                     /translation="MNTGTVKFYNDQKGFGFIQPDNGGKDVFVHATALERAGLRGLVE
                     GQKVSFDTAEDRRSGKIAVNNIQTA"
BASE COUNT          487 a          965 c         1037 g          433 t
ORIGIN      
        1 gcgagtcccg tgtaggcgac cgcagccgcg aatgcccatc cgccctccct ggccaggcgc
       61 atctggtcgt cctcgaccag gatcgagagc agcccgagcg gaatgaccga agcgaggccg
      121 acccaggcct ggaactgcag cggccgcacg cccgccatct gcttgatcat cacggcgccg
      181 agcgatgtgc agacggcgtt cgcgaccacg aacaggaggc cgaccgacag gctgaagccg
      241 gcggggtccc acatcaccgc gacggcgccg acgaaggtca gggtgatgcc gaggccgcgc
      301 tgccagccga tgcgctcgcc gagcagcgcg acggagagga gcgtcgtgat gggaacgccg
      361 agttgcacga cgacggcgac gctcgacggc gtcgcggtca tgagcccgat cgtcatgagg
      421 ccgaagctcc ccgctcccat gaggaggccg acggcgatca tgcgccacac gggtcgcggc
      481 accggcaaga gccacggaca gactgcgacg agcaccaccc cgagccgcag ggcggagaag
      541 aacagcggcg ggatatggag gtcggccagc acgagcttcg cgacgacgaa gttcgacgcc
      601 cacacgaggc agatcacgag aagcagagcg aagtcgcgcg ggagcatccg ttaagggcca
      661 gagcgcagcc cgagacgccg cgtcaaggga atgaaggccg gccggcgccg cggcaaccag
      721 gcggacctcg caaccatgca gccggagcgc cgttgagttt gcggccgcgt gctcgaccgc
      781 gctgagacaa gcaggggccc ggagcattga tgccgcgcta cttcttccat ctcagagggc
      841 cggacatcca cgtgcccgac cctgacgggg cagacttcgc cgacgccgac gaagcctggg
      901 aggcggcccg ccgcacggcc cgggcgctga tgcgcaccga ggtggagatg gaggccgagt
      961 ggctcacctg ccgcttcgag attctggacg aaggcggcga gatcgtcttc gatctgccgt
     1021 tcagcgaggt gctgggcgac ctggacacgc agcactaaaa gccggcgttc cgcatcaggc
     1081 cggcgaaagc tcgccgaagg cgttgcggcg ggcacgctcg agcagcgcct gggagcgtcg
     1141 ggtgaactcg gctccggcga ggccgggttc gatcggcgcg aggtagtcga ccgtgatcgt
     1201 cccggcgcgc ttgtacggct ccccgggcgc ccagaagtgt cccgagttga gggccaccgt
     1261 cagcaccttg gcgtcgagct tcgaatacag gatctcgatg ccgcgcttga actcgatctt
     1321 ggccgacacg ctgcggcgcg ttccctccgg gaagatgagc accgagcgtc cgccggcaag
     1381 ggcggcgcgg ctctcgtcga ccatcttgcg catcgccttg gtgccgctgt cccggtcgat
     1441 gaggatcatc ggggcgttgc gcaggaacca ggcgaagacc gggatggtca ggagctcacg
     1501 cttggcgacg atggcaatat cggggaagag cgcgaggaag gcgagcgtct cccacgtcga
     1561 ctggtggttc gcgacgatga ggcagggctc ggaggggatg ttctcgagcc cctcctcgac
     1621 atacgtcagg ccgacgcacc agccgaggag gcgcagcgtt ccgcgcgccc aggccctcgc
     1681 ggtccggcgc acggcgcgct ccggagcacc gaggagtgca agcacgagcg ccgcaggggc
     1741 gaaggcggcc gtccacagga cgagaatgac gtcgaacagt ctggagcgca gccgctgcac
     1801 ggccgggctg cgcgtccgag ccagggtcgc ggcggtcacc tgcgcgcttt acgggcggcg
     1861 tagcgcgcgt cgcgagcggc cttcttctcg gcctcgagcg cggcctcgcg ctccttgcgc
     1921 tcgatgtact ccagctcttc gcggatgagg cgctcctcct cctcggcctt gagccgcgcc
     1981 tcgagggcga tctgcgccag gcgcgcttcc tcctcggcct tgatgcgggc ggcctcgcgc
     2041 gcgcgggcgc gctcctcgcg ggcggcctgg atggcggcgc gttcctcctg ccgcttcagc
     2101 acggccggat cgtcgggagc aggcttggcg cggaacttgt cgaaagccgc cttcttggcg
     2161 ttcgccgccg aggccaggcg atcgccgaag ccggggtcct tgaagctcat gtcagtcgat
     2221 ctcgtgttgc gtgttctcgg ggcgtctacg cacaccgagg cttctaaaat agagaagccg
     2281 ccccgagggg cggcttcggc gcgcggctcg aaaagccatc acgcgatcgg caaaattacg
     2341 cggtctggat gttgttgacg gcgatcttgc ccgagcgacg gtcctcggcg gtgtcgaacg
     2401 acaccttctg gccttcgacg aggccgcgca ggccggcgcg ctcgagggcg gtcgcatgga
     2461 cgaaaacgtc cttgccgccg ttgtccggct ggatgaagcc gaagcccttc tggtcgttgt
     2521 agaacttcac ggtgcccgtg ttcattagag tcgtccttca gtgcagtgcg cattgagcgc
     2581 aagacgcacc gaagcgcgcc tcgaactcgg ttagtcgatg tttggagaga agtctgaagc
     2641 gtgcgcctag cactcggcga aggcgaagcg gcccagttgt ccggccaaat gtcgatacgc
     2701 ctacgtaggc gctatggccc cgaaatgcaa ggtcggatcg cgggtacctc gtccggcttc
     2761 cccccgccgc ggctttcgct tgccttcgcg tccgtctggg catcaactga gggcgggggg
     2821 acatcatgcc gatcaagcgt cagccgaagc ggcccgggcc gccgttgccg ggactacgcc
     2881 tgtccgatct gcgcgagcgg tcctgccgct ggccgctcgg cg
//
LOCUS       DASQWN010000247         2273 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_43289, whole genome shotgun sequence.
ACCESSION   DASQWN010000247 DASQWN010000000
VERSION     DASQWN010000247.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2273)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2273)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2273
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_43289"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            124..822
                     /locus_tag="VE686_04710"
     CDS             124..822
                     /locus_tag="VE686_04710"
                     /EC_number="3.4.23.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012334111.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004190 - aspartic-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0008150 - biological_process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR02281 family clan AA aspartic protease"
                     /protein_id="HYY83786.1"
                     /translation="MPGTAGLAVLLMGAALLIGSFAERPIAGLSPAEFAAVTALSALA
                     LLAAGWIINEFRGRWIFGVTALLSWVAIGLGLVAFYSYRYELQEVATRLLGEISPGRP
                     SVSPSGEVTVARRADGSFTIAGRANERDLRFIFDTGASTVVLTAEAAQLLGLQPAPGD
                     YSVPVLTANGRTMTAPVALAQLAVGPIVERNVRALVARPGVLHENLLGMTFLERLVSY
                     EVRNNRLILRGRPS"
     gene            complement(819..1676)
                     /locus_tag="VE686_04715"
     CDS             complement(819..1676)
                     /locus_tag="VE686_04715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018318927.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite exporter TauE/SafE family protein"
                     /protein_id="HYY83787.1"
                     /translation="MIAGLPASELATLVAALLVAGALTGLLAGLFGVGGGAVIVPVLY
                     ELFRIVGVPDDARMPLCIGTSLAVIIPTSIRSFAAHRAKGAVDMDVLRAWTVSVVLGV
                     IAASAIARYAPPEVFKAAFVLVAGFMALRLFFKRDSWSLGTDMPGRPLIHIYGLVIGA
                     LSSLMGIGGGALAAMVMTSYGRSIHQAIATSSGLGVLISIPGTLGYVVAGWPKAAEHP
                     DVAALQFPMALGYVSLVGFILFIPTSIWAAPLGARLAHRLSKRTLELAFGTFLLVMAS
                     RFAVSLMLG"
     gene            complement(1753..>2273)
                     /locus_tag="VE686_04720"
     CDS             complement(1753..>2273)
                     /locus_tag="VE686_04720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018390046.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0017150 - tRNA dihydrouridine synthase
                     activity [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA];
                     GO_process: GO:0008033 - tRNA processing [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="tRNA-dihydrouridine synthase"
                     /protein_id="HYY83788.1"
                     /translation="DALFVHARKAWLEGLSPKENRDVPPLDYGRVYRLKGAHPALPIA
                     VNGGIASLDDAARHLAHVDGVMLGRAAYHAPELLLRVDPEFFGEPAPVADAVEALEAF
                     EPYIAARLAEGVRLNQITRHILGLFAGQPGARAFRRHLATEAVKPGAGLETLRSAVAY
                     VTRARERLAQAA"
BASE COUNT          362 a          766 c          842 g          303 t
ORIGIN      
        1 acggccgagg agatcgccgg ttggctccgc ctgagcgagg aggagcgtct gcggatcatg
       61 gctgagctcg aagaccgcat gcgccgcgcc tatgccgctc ttgccgaggg ggcaccgcgc
      121 tagatgccag gaaccgcggg ccttgcggtc ctcctgatgg gcgcggcgct gctcatcggg
      181 tccttcgccg agcggccgat cgccggcctc tcaccggcgg agttcgcagc cgtgacggcg
      241 ctctcggccc tcgcgctgct ggcggcgggc tggatcatca acgagttccg tgggcgctgg
      301 atcttcgggg tgaccgcgct cctgtcgtgg gtggctatcg ggctcgggct cgtcgcattc
      361 tacagctacc gctacgagct gcaggaggtc gcgacgcggc tgctcggcga gatctccccg
      421 gggaggccct cggtctcgcc atccggagag gtgacggtcg cgcgcagggc tgacggcagc
      481 ttcaccattg ccgggcgcgc gaacgagcgg gacctgcgct tcatcttcga caccggtgcg
      541 agcacggtcg tgctgaccgc cgaagccgcg caactcctcg ggctgcagcc cgcgccgggc
      601 gactattcgg taccggtgct gacggcgaac gggcggacca tgacggcgcc ggtcgcgctc
      661 gcgcagctcg cggtgggccc catcgtcgag cgcaacgtcc gcgcgctcgt ggcacgtcct
      721 ggggtgctgc acgagaacct gctcgggatg acgttcctcg agcgcctcgt ctcgtacgag
      781 gtgcgcaaca accgcctcat cctgcgcggg cgcccgtcct agccgagcat caggctcacg
      841 gcgaagcgcg aggccatcac gagcaggaag gttccgaagg cgagttcgag cgtgcgcttc
      901 gacaggcggt gggcgagacg cgcccccaat ggagccgccc agatgctcgt cgggatgaac
      961 aggatgaagc cgacgagcga cacgtagccg agggccatcg ggaactgcag ggccgcgacg
     1021 tcgggatgct ctgcggcctt cggccagccc gcgacgacgt agccgagcgt tccggggatc
     1081 gagatcagca cgccgagacc cgacgaggtc gcgatcgcct ggtggatgct gcgcccgtag
     1141 gaggtcatga ccatggcggc gagcgcgccg cccccgatgc ccatgaggct cgacagggcg
     1201 ccgatgacca agccgtagat gtggatcaga ggccgacccg gcatgtcggt cccgaggctc
     1261 caggagtctc gcttgaagaa cagccgcaag gccatgaacc ctgcgaccag cacgaacgcg
     1321 gccttgaaaa cctccggcgg agcgtagcgg gcgatggcgc tcgccgcgat gacgccgagg
     1381 accaccgaca ccgtccaggc gcgcagcacg tccatgtcca cggcgccctt cgcacgatgg
     1441 gccgcgaacg agcggatcga ggtcgggatg atcaccgcaa gcgaggtgcc gatgcagagc
     1501 ggcatgcggg catcgtccgg cacgccgacg atgcgaaaca gctcgtagag gaccggcacg
     1561 atgacggcgc cgccgccgac gccgaagagc ccggcgagga gtcccgtcag ggcacccgcc
     1621 accaggaggg cagcgacaag ggtcgcgagt tcggaggcgg gaaggccggc gatcatcggg
     1681 atctcgcgag aggtgccgcg tcttggcgcg acaggcgacg gggacgggcg gctcagctcg
     1741 gcgcgaagac ggtcaagccg cctgcgcgag acgctcgcgt gcgcgggtca cgtaggccac
     1801 cgcggagcgc agcgtctcga ggccggcgcc cggcttcacc gcctcggtgg cgaggtgacg
     1861 ccggaaggcg cgtgcgcccg gctgccccgc gaagaggccc aggatgtggc gcgtgatctg
     1921 gttcaggcgc acaccctcgg cgagccgcgc cgcgatatac ggttcgaagg cctcgagcgc
     1981 ctcgacggcg tccgccacgg gtgccggctc gccgaagaac tcgggatcga cccgtagcag
     2041 gagctccggc gcgtggtagg ctgcgcggcc gagcatcacg ccgtccacat gggccagatg
     2101 ccgtgcggca tcgtcgagac tggcgatgcc gccgttcacg gcgatcggga gcgcgggatg
     2161 ggcccccttg aggcggtaca cccgcccgta gtcgagcggc gggacatccc ggttctcctt
     2221 cggcgagagc ccctcgagcc aagccttgcg ggcgtggacg aagagcgcgt cgg
//
LOCUS       DASQWN010000248         5550 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1132910, whole genome shotgun sequence.
ACCESSION   DASQWN010000248 DASQWN010000000
VERSION     DASQWN010000248.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 5550)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5550)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5550
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1132910"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..890
                     /locus_tag="VE686_04725"
     CDS             <1..890
                     /locus_tag="VE686_04725"
                     /inference="COORDINATES: protein motif:HMM:NF024808.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="extracellular solute-binding protein"
                     /protein_id="HYY83789.1"
                     /translation="NDLVFAAFAKGTGIEVEPVSAGSGVVMNRLRAEKDRPRGDIVWG
                     INRTLLEANKAYFAPYKTKEAEAVPAEFRDPEGLWTGSNVHLLVVTQNTKAIPAAEGP
                     KTWSDLLDPKYKGKIAFTDPSNSGSSYVNATFLVDHWGGGDAGWGKLKTLLANTKVLN
                     RSTLVFQGVGTGEYPLGISLEYAGPLWATNGAPVSVVYPSDGTLAIMEGVAIVKGGPN
                     TDNAKKFVDYVTRKDVREMILKATFRRPARQDLDLSTLPGNMPALSSLKLLSYDEASW
                     GAKRSETLEKLKDLIQQTR"
     gene            924..2000
                     /locus_tag="VE686_04730"
     CDS             924..2000
                     /locus_tag="VE686_04730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014494053.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HYY83790.1"
                     /translation="MASITIDGVSRSFGAVHAVRDVSVTVADGEFFTLLGPSGCGKTT
                     LLRMVAGFADLEAGAIRFGERRIDTLPPHKRNTGMVFQNYAIFPNLTVADNVAYGLRA
                     RRVGAPDIADRVGRALRLVQLQGYDARWPHQLSGGQLQRVAIARALVIEPEVLLLDEP
                     LSNLDAQLRVEMRAEIRQLQQTLGITAIYVTHDQEEALSISDRIAVMRAGRFEQIGAP
                     KDVYRDPETPFVAEFMGTTNLLVGTVAGDSRQGTLVRVGGTAFTVAKQAALPGAEVTF
                     SLRPEALRPLAPGEPEPPGWATLTAQLTRLEFLGALTRIDARIGGDAGVILRAAALDL
                     PLDRAAPGQEVSFAYDPERVTVFS"
     gene            1997..3667
                     /locus_tag="VE686_04735"
     CDS             1997..3667
                     /locus_tag="VE686_04735"
                     /inference="COORDINATES: protein motif:HMM:NF012738.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0006826 - iron ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="iron ABC transporter permease"
                     /protein_id="HYY83791.1"
                     /translation="MSIAGAGLLAPRMRFPLVVTVLALAFLGLFFLYPLSRIFNASIL
                     DPSGVNFTLRNYVRILGSPFYQGSVLNSLGIGALATVITTAIAVPLAFALARLPVAGR
                     SALMALVVLPLVLPSFVSAYALVLMLGRAGFVSQWLRDFGVPFTSVYGVGGIVTVYAL
                     TLYPYVLLPTIAGLKAIDVSVEEASQNLGASRWRGFWTVTLPIVVPSVLAGALLVFIE
                     TLENFGVPAVLAEDRPILAVEAYKLFVGETDQNPASAGVLGMLLITCTALVLLIQRRY
                     LGRRRFATGARRSPPMLQVGAGWRIAATAYCWAVVLASLAPFFAVVVLAFMKFRGPVL
                     EGSFSLDNFADLFSRSGRPLANTLMLSTAAAVAGAAIGVPIGYAVTRFRSSVTTVLDV
                     VATMPFAVAGTVLGIGLIIAFNGGWLVLTGGWFIMVLAYVVRKLPFSVRASSSIVHQI
                     DPSLEEASINLGVSPLMTFARLTVPLMLGGIVGAMVLTWVTVSSELSSTVVLYSGQWQ
                     TLTVVMFQALESTGAGRAVAAACLLVLITLFPLAIVYRLLRRHEMALL"
     gene            3737..4189
                     /locus_tag="VE686_04740"
     CDS             3737..4189
                     /locus_tag="VE686_04740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014891284.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SRPBCC family protein"
                     /protein_id="HYY83792.1"
                     /translation="MSDRIEKSVELKAPVARVWRALTDHEEFGTWFRVRLDGPFVPGQ
                     VSRGRITYPGYEHIRWEAVVQTMEPERLFSFTWHPYAIEPDQDYSAEPPTLVEFTLEA
                     IPDGTLLRVVESGFDKVPAKRRLEAFRMNEGGWSAQMQNIAQHVGTTS"
     gene            4194..4514
                     /locus_tag="VE686_04745"
     CDS             4194..4514
                     /locus_tag="VE686_04745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012092354.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metalloregulator ArsR/SmtB family transcription
                     factor"
                     /protein_id="HYY83793.1"
                     /translation="MPAVEVRAAVFAALGDATRLSVVTRLSSGEPQSISRLTEGTRLS
                     RQAVTKHLRVLAEAGVVRSIRVGRESLFELEPQPLADVRDYLDRVSRQWDDALARLKA
                     HLEQ"
     gene            4571..4993
                     /locus_tag="VE686_04750"
     CDS             4571..4993
                     /locus_tag="VE686_04750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002711427.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MAPEG family protein"
                     /protein_id="HYY83794.1"
                     /translation="MTVPAVLLPVFVQVGLTFFLLFWMGAVRLRALKGREVRLGDIAL
                     RQPAWPERPTQISNAYDSQFQLPVLFYALVPLALITRKADLLFVVLSWIFVATRLAHA
                     AIHTTSNNVQQRFMAFLAGAVVLLIMWIVFAAHILLGI"
     gene            5039..>5550
                     /locus_tag="VE686_04755"
     CDS             5039..>5550
                     /locus_tag="VE686_04755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008969518.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HYY83795.1"
                     /translation="MIPAARISAAIEVLADVEARRRPAPDALKDWGLSHRFAGSKDRA
                     AIASLVYDALRRKASAGWIMGEASPRAAVLGMLRLQRGMDVDAIAALCSGERFAPAPL
                     TDTERERLASATLDGAPPAVAGDFPEWIEPSLARALAGDLVPELQALARRAPIDMRVN
                     GLKAAREDVL"
BASE COUNT          781 a         2006 c         1818 g          945 t
ORIGIN      
        1 tgaacgacct cgtcttcgcc gccttcgcga aggggaccgg catcgaggtc gagcccgtct
       61 cggcgggctc gggcgtcgtc atgaaccgcc ttcgcgccga aaaggaccgc ccgcgcggcg
      121 acatcgtctg gggcatcaac cggacgctgc tcgaggccaa caaggcttac ttcgcaccct
      181 acaagaccaa ggaggcggag gcggtcccgg ccgagttccg cgatcccgag ggcctgtgga
      241 ccggctcgaa cgtccacctc ctggtcgtca cgcagaacac caaggcgatc ccggcggccg
      301 agggtcccaa gacctggagc gacctcctcg atccgaaata caagggcaag atcgccttca
      361 cggacccgtc gaactcgggc tcgtcctacg tcaacgcgac gttccttgtg gaccattggg
      421 gcggcggcga cgcgggctgg ggcaagctca agacgctcct cgccaacacc aaggtgctga
      481 accgctcgac ccttgtgttc cagggcgtcg gcaccggcga gtacccgctc ggcatctcgc
      541 tcgaatacgc cggcccgctg tgggcaacga acggcgcccc ggtgagcgtc gtctacccct
      601 cggacggcac ccttgccatc atggagggcg tggccatcgt caagggcggc ccgaacacgg
      661 acaacgcgaa gaagttcgtc gactacgtca cgcgcaagga cgtgcgcgag atgatcctga
      721 aggccacgtt ccgccgtccc gcgcggcagg atctcgatct gtcgaccctg ccgggcaaca
      781 tgccggcgct gtcgagcctc aagctcctct cctacgacga ggcgagctgg ggcgccaagc
      841 gcagcgagac cctcgagaag ctgaaggacc tgatccagca gacacgctga tcgcgacgag
      901 gctgtcggcg caggacaccg gatttggcca gcatcaccat cgacggcgtg agccgctcgt
      961 tcggcgccgt gcacgccgtg cgcgacgtgt cggtgacggt cgccgacggc gagttcttca
     1021 cgctgctcgg gccctcgggc tgcggcaaga ccacgctcct gcgcatggtg gcgggtttcg
     1081 ccgatctcga ggccggcgcc atccgcttcg gcgagcgccg catcgacacc ctgccgcccc
     1141 acaagcgcaa caccggcatg gtgttccaga actacgccat cttcccgaac ctgacggtgg
     1201 ccgacaacgt cgcctacggc ctgcgcgccc gacgggtcgg agcgcccgac atcgccgacc
     1261 gcgtgggccg cgcgctgcgc ctcgttcagc tccagggcta cgacgcgcgc tggccgcacc
     1321 agctctcggg cggccagctg cagcgcgtcg caatcgcccg cgcgctcgtc atcgagcccg
     1381 aggtcctgct gctcgacgag ccgctctcga acctcgacgc gcagcttcgc gtggagatgc
     1441 gggccgagat tcggcaactc cagcagaccc tcggtatcac cgccatctac gtgacccacg
     1501 accaggagga ggcgctgtcg atctccgacc gcatcgctgt gatgcgggcg ggccggttcg
     1561 agcagatcgg cgcgcccaag gacgtctacc gcgacccgga aacgccgttc gtggcggagt
     1621 tcatgggcac caccaacctc ctcgttggca ccgttgcagg cgattccagg cagggaacac
     1681 tggtgcgggt cggcgggacg gcgttcacgg tggcgaagca ggcagccctt cccggcgcgg
     1741 aggtgacctt ctcgcttcga cccgaggcgc tgcgcccact tgcgcccgga gagcctgagc
     1801 cgccgggctg ggctacgctc acggcgcaac tcacccggct cgagttcctg ggggcgctca
     1861 cccgcatcga tgcgcgcatc ggcggcgacg ccggcgtgat cctgcgggct gccgccctcg
     1921 acctcccgct cgaccgggcg gcgcccggcc aggaggtgag cttcgcgtac gacccggagc
     1981 gcgtgacggt gttctcatga gcatcgccgg cgccggcctt ctcgcgccgc gcatgcgctt
     2041 tccgctcgtc gtgacagtgc tggctctcgc cttcctcggc ctgttcttcc tctacccgct
     2101 gtcacgcatc ttcaacgcca gcatcctcga cccgagcggc gtcaacttca ccctgcgcaa
     2161 ctacgtccgc atcctcggca gccccttcta ccagggcagc gtcctgaaca gcctcggcat
     2221 cggcgcgctc gcgaccgtga tcaccacggc gatcgccgtg ccgctcgcct tcgccctggc
     2281 gcggctgccg gtggccggca ggtcggcgct gatggcgctc gtcgtgctgc cgctcgtgct
     2341 tccgagcttc gtctcggcct atgcgcttgt gctgatgctc ggccgcgccg gcttcgtgtc
     2401 gcaatggctg cgcgactttg gcgttccctt cacctccgtg tacggcgtcg gcggcatcgt
     2461 caccgtctat gcgctcacgc tgtaccctta tgtcctcttg ccgaccatcg cggggctgaa
     2521 ggccatcgac gtgtccgtcg aggaggcgag ccagaacctt ggcgcctcgc gctggcgcgg
     2581 cttctggacg gtgaccctgc cgatcgtcgt gccctcggtc ctggccggcg cgctgcttgt
     2641 cttcatcgag accttggaga acttcggcgt tcccgccgtg cttgcggagg acaggccgat
     2701 cctcgccgtc gaagcctaca agctcttcgt cggcgagacc gatcagaacc ccgcctccgc
     2761 gggggtgctc gggatgctgc tcatcacctg cacggcgctg gtgctcctga ttcagcgccg
     2821 ctacctcggt cggcgccgct tcgccacggg cgcgcgccgc agcccgccca tgctgcaggt
     2881 cggggcggga tggcgcatcg cggcgaccgc gtactgctgg gccgtggtgc ttgcttcgct
     2941 ggcgccgttc ttcgccgtcg tggtgctcgc cttcatgaag ttccgcggcc cggtgctcga
     3001 gggctcgttc agcctcgaca acttcgccga cctgttctca cgctccgggc ggccgctcgc
     3061 caacaccctc atgctctcga cagccgccgc ggtcgcgggg gcggccatcg gggtgccgat
     3121 cggctacgcg gtgacgcgct tccgctcgtc cgtgaccacg gtgctggacg tcgtcgcgac
     3181 catgccgttt gcggtcgccg gcacggttct gggcatcggg ctgatcatcg ccttcaacgg
     3241 cggctggctc gtgctcaccg gcggctggtt catcatggtc ctcgcctatg tggtgcggaa
     3301 gctgccgttc agcgtgcgcg cctcgagcag catcgtgcac cagatcgacc cgagcctcga
     3361 ggaggcctcg atcaacctcg gcgtctcgcc gctgatgacc ttcgcccgcc tgaccgtgcc
     3421 gctcatgctc ggtggcatcg tcggcgccat ggtgctgacc tgggtgacgg tgtcgtccga
     3481 gctgagctcc acggtggtgc tctacagcgg tcaatggcag acgctgaccg tggtgatgtt
     3541 ccaggccctc gagagcaccg gggcggggag ggccgtcgcc gccgcctgcc tcctcgtcct
     3601 catcaccctc tttcccctcg ccatcgtcta ccgcctgctg cgccgccacg agatggcgct
     3661 gctttaggaa gggcaacaaa acggttgcct ttgtccggcc gtcggcttac acagatgcgc
     3721 aacaaggagg ttgcggatgt cggatcgcat cgaaaagagc gtcgagctga aggccccggt
     3781 cgcgcgggtc tggcgcgcgc tgacagacca cgaggagttc ggcacgtggt tccgggtccg
     3841 gctcgatggt ccgttcgtcc cggggcaggt gtcccgcggg cggatcacct atccgggcta
     3901 cgagcacatc cgctgggaag cggtggtcca gacgatggag ccggagcgcc tgttctcctt
     3961 cacctggcac ccttacgcca tcgaaccgga ccaggattac tccgccgagc cgccgacgct
     4021 cgtggagttc accctcgagg cgatccccga cggaaccctg ctgcgggtcg tcgagtcggg
     4081 attcgacaag gtcccggcaa agcgccgcct cgaggcattc cgcatgaacg agggcggctg
     4141 gagcgcgcag atgcagaaca tcgcccagca tgtcgggacc acgtcctagg gagatgcccg
     4201 ccgtcgaggt gcgcgccgcg gtgttcgcgg ccctcggcga cgccacgcgt ctgtccgtcg
     4261 tgacgcggct gtcgtcggga gagccgcagt ccatctcgcg tctgaccgag ggcacccggc
     4321 tttcccggca ggcggtcacg aagcacctgc gcgtgcttgc ggaggcggga gtggtccgga
     4381 gcatcagggt cggccgcgag agcctgttcg agctcgagcc gcagccgctc gcagacgtgc
     4441 gcgactacct ggaccgggtc tcgcggcagt gggacgatgc gctggcccgc ctcaaggcgc
     4501 acctcgagca gtagaggagc ctgccggcgt gcagcttgcg ttcgcggcag cacacggcca
     4561 aggttcgagc atgaccgttc ccgccgtgct cctccccgtc ttcgtccagg tcggattgac
     4621 ctttttcctc ctgttctgga tgggcgccgt gcgcctgcgc gcgctgaagg gccgcgaggt
     4681 ccgcctcggc gacatcgccc tgcgccagcc ggcctggccc gagcgcccga cgcagatctc
     4741 gaatgcgtac gacagtcagt tccagctgcc ggtcctgttc tacgccctcg tcccgctcgc
     4801 gctcatcacc cgcaaggcgg acctcctgtt cgtggtcctc tcctggatct tcgtcgccac
     4861 ccgccttgcg catgcggcga tccacaccac gagcaacaac gtccagcagc gattcatggc
     4921 gtttctcgcc ggcgccgtcg tcctcttgat catgtggatc gtcttcgcag cgcacatcct
     4981 cctcggaatc tgagccgacg gcagtcgcga gcgcccgcga atgtggtagg gcgcggccat
     5041 gatccccgca gcccgcatct ccgccgccat cgaggtcctc gccgacgtcg aggcgcgccg
     5101 ccgccccgca ccggacgccc tcaaggactg gggcctgtcg caccgctttg ccggctcgaa
     5161 ggaccgtgcc gccatcgcga gcctcgtcta cgacgcgctc cggcgcaaag cctcggccgg
     5221 ctggatcatg ggggaggcga gcccgcgagc cgccgtcctc ggcatgctcc gcctccagcg
     5281 ggggatggat gtcgacgcaa tcgccgcctt gtgctccggc gagcgcttcg cccccgcgcc
     5341 gctcacagac acggaacgcg agcgtcttgc ttcggcgacc ctcgacggtg cgccgcctgc
     5401 tgtggcgggc gacttcccgg agtggatcga gccgtctctg gcgcgggccc tcgcaggcga
     5461 cctcgtcccc gagttgcagg cgcttgctcg tcgtgcgcct atcgacatgc gggtgaacgg
     5521 tctgaaagcc gcgcgcgagg atgtgctcca
//
LOCUS       DASQWN010000249         2026 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1333514, whole genome shotgun sequence.
ACCESSION   DASQWN010000249 DASQWN010000000
VERSION     DASQWN010000249.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2026)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2026)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2026
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1333514"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            70..525
                     /locus_tag="VE686_04760"
     CDS             70..525
                     /locus_tag="VE686_04760"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016634893.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003755 - peptidyl-prolyl cis-trans
                     isomerase activity [Evidence IEA];
                     GO_function: GO:0016018 - cyclosporin A binding [Evidence
                     IEA];
                     GO_process: GO:0000413 - protein peptidyl-prolyl
                     isomerization [Evidence IEA];
                     GO_process: GO:0006457 - protein folding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HYY83796.1"
                     /translation="MSDATLHTNHGAIRLELLDEDAPKTVENFRSLAADGFYDGLVFH
                     RVIPDFMIQGGDPLGTGTGGPGYTFEDEINEHKLVRGALAMANAGPNTNGSQFFILTA
                     QAAPWLDGKHTVFGRVVEGMDAVDSIESAPTGARDRPVEDCRIERVELS"
     gene            631..>2026
                     /locus_tag="VE686_04765"
     CDS             631..>2026
                     /locus_tag="VE686_04765"
                     /inference="COORDINATES: protein motif:HMM:NF012398.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase family protein"
                     /protein_id="HYY83797.1"
                     /translation="MSTVEQQPQASSNGAGAKTIAVTNKATGETIGHVPDLDRDGIGE
                     LVARARAAQPAWDALGFDGRREVMLDLRKWLVDNMDRICQTIVEENGKPWEDAQLGVF
                     YTADALTFWPKRAKKYLSDQTYRPHSAFLFGAKVILRYRPYGVVGVIGPWNYPLINNF
                     GDAVPALMAGNSVVLKPSSITPMTSLLIQEGWREIGAPEDVYLVATGAGGAGSALIDH
                     VDMVHFTGSTETGKKVMAQAAETVTPVTLELGGKDPLIVCADADLERAANAALFYSMQ
                     NGGQTCISIERAYVEEPVYEEFVAKIAEKARVLRQGVPAGPGSIEVGAMTMSDQADIV
                     ERHVRDAVDKGAKVVVGGSRNETGGGIFFQPTVLRDVDHTMDIMREETFGPTLPIMRV
                     RNADEAVRLANDSPFGLDSSVFTGDRAKGEELAKRIEAGATVVNDAMTNYFATEVPIG
                     GIKESGLGARHGAVG"
BASE COUNT          349 a          710 c          708 g          259 t
ORIGIN      
        1 ctcgaacggg ggggcggcga accgccgggc ggcaaacggc cgagccgcaa agggcggggc
       61 ggggcgccga tgagcgacgc gacgctgcac accaaccacg gcgccatccg actcgagctg
      121 ctcgacgagg acgcgccgaa gacggtcgaa aatttccgct cgctcgccgc cgacggcttc
      181 tacgacggcc tcgtgttcca ccgcgtgatc cccgacttca tgatccaggg cggcgatccc
      241 ctcggcacgg gcaccggagg ccccggctac acgttcgagg acgagatcaa cgagcacaag
      301 ctcgtgcgcg gcgcgctcgc catggcgaac gcggggccga acacgaacgg gagccagttc
      361 ttcatcctca ccgcgcaagc cgcgccgtgg ctcgacggca agcacaccgt cttcggccgg
      421 gtggtcgagg gcatggacgc cgtcgacagc atcgagagcg cccccaccgg cgcccgcgac
      481 cggccggtcg aggactgccg gatcgagcgc gtcgagctga gctaggccgc tcggaggtcg
      541 gcccagcccg gccagggcgc tcgggtagac tcgcgtgctc gcgctcggcg cgtcccgccg
      601 ggcccacacg ggaggacgag ggaggaccac atgtccacgg tcgagcagca gccgcaggcg
      661 agctccaacg gcgctggcgc gaagacgatc gccgtcacca acaaggcgac gggcgagacg
      721 atcggtcacg tgcccgatct cgaccgcgac gggatcggcg agctcgtggc gcgggcgcgg
      781 gcggcgcagc ccgcctggga cgcgctcggc ttcgacggac ggcgcgaggt catgctcgac
      841 ctgcgcaagt ggctcgtcga caacatggac cgcatctgcc agacgatcgt cgaggagaac
      901 ggcaagccgt gggaggacgc gcagctcggc gtcttctata cggccgacgc gctcaccttc
      961 tggccgaagc gcgcgaagaa gtacctctcc gaccagacct accgcccgca ctcggcgttc
     1021 ctgttcggcg ccaaggtgat cctccgttat cggccctacg gcgttgtcgg ggtgatcggc
     1081 ccgtggaact acccgctcat caacaacttc ggcgacgccg tgcccgcgct catggccggt
     1141 aactcggtcg tccttaagcc gagctcgata acgccgatga cctcgctgct gatccaggag
     1201 ggttggcgcg agatcggcgc gccggaggac gtgtacctcg tggccaccgg ggcgggcggc
     1261 gccggctccg cgctcatcga ccacgtcgac atggtccact tcaccggctc gaccgaaacc
     1321 ggcaagaagg tcatggccca ggcagccgag accgtgacgc cggtcacgct cgagctcggc
     1381 ggcaaggacc cgttgatcgt gtgcgccgac gccgacctcg agcgcgcggc caacgccgcc
     1441 ctcttctact cgatgcagaa cggcggccag acgtgcatct cgatcgagcg cgcctacgtc
     1501 gaggagccgg tctacgagga gttcgtcgcc aagatcgccg agaaggcccg agtgctccgc
     1561 cagggcgttc ctgccggccc cggcagcatc gaggtcggcg cgatgacgat gtccgaccag
     1621 gccgacatcg tcgagcgcca cgtccgcgac gccgtcgaca agggcgccaa ggtcgtggtg
     1681 gggggctcac gcaacgagac gggcggcggc atcttctttc agccgacggt gctgcgcgac
     1741 gtcgaccaca cgatggacat catgcgcgag gagacgttcg ggccgacgct cccgatcatg
     1801 cgcgtgcgca acgccgacga ggccgtgcgg ctcgccaacg actcgccatt cgggctcgac
     1861 tcgagcgtgt tcaccggcga ccgcgcgaag ggggaggagc tcgcaaagcg gatcgaggcc
     1921 ggcgccaccg tggtcaacga cgccatgacc aactacttcg cgaccgaggt cccgatcgga
     1981 ggcatcaagg agtcgggcct cggcgcccgg cacggggcgg tcggca
//
LOCUS       DASQWN010000250         4317 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_43933, whole genome shotgun sequence.
ACCESSION   DASQWN010000250 DASQWN010000000
VERSION     DASQWN010000250.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 4317)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4317)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4317
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_43933"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..315
                     /locus_tag="VE686_04770"
     CDS             <1..315
                     /locus_tag="VE686_04770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009493182.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chromate transporter"
                     /protein_id="HYY83798.1"
                     /translation="PFIETLRGNKALSGALSAITAAVVGVILNLAVWFAVHTIFGEVR
                     LFRWGPLAFDAPVLATVNVWALVLSIAAVVAMFRFKVGMIPTLAATSAAGVALYLAGA
                     IS"
     gene            332..1534
                     /locus_tag="VE686_04775"
     CDS             332..1534
                     /locus_tag="VE686_04775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011970459.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HYY83799.1"
                     /translation="MRAAGVIEGDSRRILIARGLRAFGDGYVAVILPVHLAQLGYGAV
                     AVGAISTATLLGSAALTLAIGGTAHRLMRRSALLAASALMAATGLAFGVTESFWPLIV
                     IAFVGTLNPTSGDVSVFLPLEHTVLAQSVPGAKRTAVFARYSFVGSIVGACGALAAGA
                     VDWLAPWLSARTVTDTLFLLYGGLGLATFLIYRRLSPAVEAGDLPTAPLGPSRRRVYG
                     LAALFAVDSFGGGFVVNSLLATWLFQRFQIDVATTGAIFFVTGLCAAFSFFVAVPLSE
                     RFGAVNTMVFTHLPANAFLALAAFAPTIEAAFALLICRSLLSSMDVPVRSAYVMAVVT
                     PPERPAAASVTAVPRSLASAVSPLLSGWLLAATPFGWPLVIGGALKAAYDLALLRQFA
                     KVRPSDHE"
     gene            1658..2215
                     /locus_tag="VE686_04780"
     CDS             1658..2215
                     /locus_tag="VE686_04780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007608380.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030976 - thiamine pyrophosphate binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine pyrophosphate-binding protein"
                     /protein_id="HYY83800.1"
                     /translation="MSAAASAQAASQSEARPWHAIVRETLKANDVRLVTYVPDRVLTP
                     LIKGVHDDPFFTALVTTREEEAVGIVTGAWMGGMRGVVLMQTSGFATLPNALASLALP
                     YGIPLVMIVSERGTLGEFNLGQAMVCRTMRPVLDALGIENHTITRLDELEFIADRSIK
                     QAIATQAPCALILSPLLTGGKKFAA"
     gene            2227..2835
                     /locus_tag="VE686_04785"
     CDS             2227..2835
                     /locus_tag="VE686_04785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011927735.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0030976 - thiamine pyrophosphate binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine pyrophosphate-dependent enzyme"
                     /protein_id="HYY83801.1"
                     /translation="MASLDIPAHRANLKVLNRFDVTKRLVGKLRDEAVIGGIGNTNFD
                     LWATGQRPQNFYMLGSMGLACPIALGVALAQPDRGVVALEGDGSLLMQLGCLSTIAVA
                     ASKNLTIVVMDNGCYQITGGQPTTTGVAADIVAIAQGCGLSRSWWAADEHMFDSLFAR
                     ALKEGGPSLIAVRLDDAPATATTERDPARIRDRFMRGVGAKA"
     gene            2832..3611
                     /locus_tag="VE686_04790"
     CDS             2832..3611
                     /locus_tag="VE686_04790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009026129.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HYY83802.1"
                     /translation="MTLPRAVVRGATFLAPLAVLFLLWPILIRAFDVNPRVFPDLPAV
                     ALAGLETLRDGTLVAHVGASLGRVVVGTVLAILVSVPLGVAMGVSPVVSSLLTPLFRF
                     FSVLAGIAWIPIATLWFGYGFGAITFVIFNAVFFIVAYNTLLGVSTIPMPVRNAAASL
                     GAGRWAMLTEVLLPGALPNIVTGIRTGLGFAWRGLIAAEMIATNVGLGYMLFVARDFY
                     RTEVIVLGMIVIGLLWLAIDRLLLAPLERATVERWGMVRAG"
     gene            3608..>4317
                     /locus_tag="VE686_04795"
     CDS             3608..>4317
                     /locus_tag="VE686_04795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009026128.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HYY83803.1"
                     /translation="MTPLQRAWAFYVRATARFPAVRSIVPFVPVVALWAIVSYADVFP
                     RAFFPAPGDVVRSFGDLIYKGILPEYLEDSVVRLAVGAACGMALGIPLGVAVGLSRRA
                     HAALWPLLLFFAAIGDIAWLPILLIWFGFGLTTMTFVIVYTVLFPVVLNTALGVRSVP
                     TELHRAALSLGASRPRVVWEVVLPGALPNIMTGLRNGLGYGWRALIAGEMLIGAGGLG
                     FMIFDARRFFVLGQIIAG"
BASE COUNT          511 a         1586 c         1433 g          787 t
ORIGIN      
        1 ccgttcatcg agaccctgcg cggcaacaag gcgctcagcg gagcgttgtc ggcgatcacc
       61 gccgcggtgg tgggcgtgat cctcaatctc gcagtctggt tcgccgtgca caccatcttc
      121 ggcgaggtgc gactattccg ctgggggccg cttgccttcg acgcgccggt gctggcgacc
      181 gtgaacgtct gggccctcgt tctgtccatc gcggccgtcg tcgccatgtt ccgcttcaag
      241 gtcggcatga tcccgacgct cgcggcgacc tcggccgccg gcgtcgccct ctacctcgcc
      301 ggggcgatct catgaggacg cgccgagagg catgcgggcc gccggggtga tcgaaggcga
      361 ctcgcggcgg atcctgattg cgcgaggcct gcgcgccttc ggtgacggct acgtcgccgt
      421 catcctgccg gtgcatctcg cccagctcgg gtacggtgcc gtcgccgtcg gtgcgatctc
      481 gacggccacg ttgctcggct ccgccgcgct gacgctggcg atcggcggga cggcgcaccg
      541 cctgatgcga cgctcggccc tgctcgccgc gagcgccctc atggccgcca cgggcctcgc
      601 cttcggcgtc accgagagct tctggccgct catcgtcatt gccttcgtgg gaacgctcaa
      661 tccgacgagc ggcgacgtca gcgtcttcct gcccctcgag catacggtcc ttgcgcagtc
      721 ggtgccgggc gcgaaacgga cggcggtgtt cgcccgctac agcttcgtcg gctcgatcgt
      781 cggcgcctgc ggcgcgcttg cggcgggcgc cgtggactgg ctcgcgccgt ggctctccgc
      841 gcgcaccgtc accgacaccc tctttctcct ctacggcggg ctcggcctcg cgaccttcct
      901 gatctatcgg cggctgtcgc cggccgtcga agccggcgac ctgccgactg ccccgctcgg
      961 gccgtcgcgc cggcgcgtgt acgggctcgc agcgctgttc gccgtcgatt cgttcggcgg
     1021 cggcttcgtg gtcaacagcc tgcttgccac gtggctgttc cagcgcttcc agatcgacgt
     1081 cgcgaccacg ggcgcgatct tcttcgtcac cggcctttgc gccgccttct cgttcttcgt
     1141 cgccgtgccg ctgtccgagc gcttcggcgc cgtgaacacc atggtcttca cgcatctgcc
     1201 ggcgaacgcc ttcctggcgc ttgccgcctt cgcgccgacg atcgaggcgg ccttcgccct
     1261 gctgatctgc cgcagcctcc tgtcgagcat ggatgttccg gtgcgctcgg cctacgtcat
     1321 ggccgtggtc acgccacccg agcggccggc ggcggcgagc gtaacggccg tgccgcgcag
     1381 cctcgccagc gccgtgtcgc cgctcctctc gggatggctc ctcgccgcca ccccgttcgg
     1441 ctggccgctg gtgatcggcg gcgccctcaa ggccgcctac gacctcgccc tcctgcgcca
     1501 attcgccaag gtgcggccga gcgatcacga gtgatccgaa tggggacgcg cgcggggtgg
     1561 caatccatca tcgtacccgg tatctcgttg ctcacgagac aagcgacgcc ggtgcttcag
     1621 ggaagcgcgg cagccgcgaa gcgacaggga gggaagggtg agcgcagccg ctagcgcgca
     1681 ggccgcgtcg cagagcgagg cgaggccctg gcacgcgatc gtccgggaga ctctcaaggc
     1741 gaacgacgtc cgtctcgtca cctacgtgcc ggatcgggtg ctcacgccgc tgatcaaggg
     1801 cgtgcacgat gacccctttt tcaccgcgct cgtgaccacg cgcgaggagg aggcggtcgg
     1861 catcgtcacg ggcgcctgga tggggggcat gcgcggcgtc gtgctgatgc agacgagcgg
     1921 tttcgcgacg ctcccgaacg cgcttgcctc gctcgcgctg ccgtacggca ttccgctcgt
     1981 catgatcgtc tccgagcgcg gcacgctcgg cgagttcaac ctcggccagg ccatggtgtg
     2041 ccggaccatg cggccggtgc tcgacgccct cggcatcgag aatcatacca tcacgcggct
     2101 cgacgagctt gagttcatcg ccgaccgctc gatcaagcag gcgattgcca cgcaggcgcc
     2161 gtgcgcgctg atcctgtcgc cgctgctcac cggcggcaag aagttcgcgg cctgaaggac
     2221 agcgccatgg caagcctcga catcccggcg catcgcgcga acctcaaggt cctcaaccgc
     2281 ttcgacgtga cgaagcgcct cgtcggcaag cttcgcgacg aggcggtcat cggcggcatc
     2341 ggcaacacca actttgacct ttgggcgacc ggccagcggc cgcagaactt ctacatgctc
     2401 ggctccatgg gccttgcgtg cccgatcgcc ctcggggtgg cgctggcgca gcccgaccgc
     2461 ggcgtcgtgg cccttgaggg cgacggctcg ctgctcatgc agctcggctg cctgtcgacc
     2521 atcgcggtgg cggcctcgaa gaacctcacc atcgtcgtca tggataacgg ctgttaccag
     2581 atcaccggcg gccaaccgac gaccaccggc gtcgccgccg acatcgtcgc catcgcgcaa
     2641 ggctgcgggc tctccaggag ctggtgggcg gccgacgagc acatgttcga cagcctcttc
     2701 gcccgggccc tgaaggaggg cggtccgtcg ctcatcgccg tgcgcctcga cgacgcgccc
     2761 gcgacggcca cgaccgagcg cgatccggcg cgcattcgcg accgcttcat gcgcggggtc
     2821 ggcgcaaagg catgaccctt cctcgtgcgg ttgtgagggg cgcgacgttc ctggcgcccc
     2881 tcgccgtcct gttccttctc tggccgatcc tgatccgcgc gttcgacgtc aatccgcgcg
     2941 tcttccccga cctgccggcc gtggcgcttg ccgggctcga gaccctgcgt gacggcaccc
     3001 tcgtggcgca cgtcggcgcg agcctcgggc gggtcgtggt cggcaccgtg ctcgccatcc
     3061 tggtgagcgt gcctctcggc gtcgccatgg gcgtgagccc cgtggtgtcg agcctgctga
     3121 cgcccttgtt ccgcttcttc tcggtgctcg ccgggatcgc ctggatcccg atcgcgaccc
     3181 tgtggttcgg ctacggcttt ggcgccatca ccttcgtgat cttcaacgcc gtgttcttca
     3241 tcgttgccta caacacgctg cttggcgtct cgaccattcc gatgcccgtg cgcaatgccg
     3301 ccgcctccct cggggccggc aggtgggcga tgctcaccga ggtgctgctg cccggcgcgc
     3361 tgcccaacat cgtcaccggc atccgcaccg gccttggctt tgcctggcgc gggctcatcg
     3421 ccgccgagat gatcgcgacg aacgtcggcc tcggctacat gctcttcgtc gcgcgcgact
     3481 tctaccgcac cgaggtgatc gtgctcggca tgatcgtcat cggcttgctc tggctcgcca
     3541 tcgaccggtt gctgctggcg ccgctcgagc gcgcgaccgt cgagcgctgg ggcatggtgc
     3601 gcgccggatg accccgctgc aacgcgcctg ggcgttctac gtgcgcgcga cggcgcgctt
     3661 tcccgccgtg cgctcgatcg tgccgttcgt gcccgtcgtc gcgctctggg ccatcgtctc
     3721 ctacgccgac gtgttcccgc gcgccttctt cccggcgccc ggcgacgtgg tgcgctcgtt
     3781 cggcgacctc atctacaagg gcatcctgcc cgagtacctg gaggacagcg tcgtccggct
     3841 cgccgtcggc gccgcctgcg gcatggccct cggcatcccg ctcggggtcg cggtgggcct
     3901 gagccgacgc gcccacgcgg ccttgtggcc gctgctcctg ttcttcgccg ccatcggcga
     3961 catcgcctgg ctgccgatcc tgctgatctg gttcggcttc ggcctcacca ccatgacctt
     4021 cgtcatcgtc tacacggtgc tgttcccggt cgtgctcaac accgcgcttg gcgtgcgctc
     4081 ggtgccgacg gagctgcacc gggccgcact gtcgctcggc gcctcgcggc cccgcgtcgt
     4141 gtgggaggtg gtgctgcccg gcgcgctgcc gaacatcatg accggcctgc gcaacggcct
     4201 cggctacggc tggcgcgcgc tgatcgcggg cgagatgctg atcggcgccg gcgggctggg
     4261 cttcatgatc ttcgacgcgc ggcgcttctt cgtgctcggc cagatcatcg ccggcat
//
LOCUS       DASQWN010000251         3318 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_915291, whole genome shotgun sequence.
ACCESSION   DASQWN010000251 DASQWN010000000
VERSION     DASQWN010000251.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 3318)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3318)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3318
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_915291"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1320)
                     /locus_tag="VE686_04800"
     CDS             complement(<1..1320)
                     /locus_tag="VE686_04800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015927942.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydantoinase/oxoprolinase family protein"
                     /protein_id="HYY83804.1"
                     /translation="MRRVAGIDVGGTFTDLLLHEVGPEGPRVRLAKVPTSAGNQAAGV
                     IHALEAAGVPASEIDLIVHGTTATTNAVLERKVARVGLITTRGFRDTLELGRRTRPKP
                     YGLTGTFEPLIPRELRLEVTERMSARGEVLTALDEDEVAARVRELIEAECEALVIHFL
                     HAYANPTHERRAAEIARAIWPNRYITMGHALLSEYREYERGTTASVNAAVQPILDRYL
                     GRLQADLSARGFRRDLLVMNGNGGTVSARLVADEAAKTVMSGPASGVMAAAVTLAQAG
                     VDNAITYDMGGTSTDVALIRGGVPEVSAELSIAYGLPIHVPMVDVRTVGAGGGSVVSV
                     DKAGMLRVGPESAGADPGPIAYGRGGTRPTVTDAHIVLGRLDPGGLLAVTRPVPLAQV
                     RTHFDEQVARPLGLSVEDAAAAALRLADTHMAGAIRMVSLSRGHDPRD"
     gene            complement(1420..1620)
                     /locus_tag="VE686_04805"
     CDS             complement(1420..1620)
                     /locus_tag="VE686_04805"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY83805.1"
                     /translation="MPFRALCQFDVSGYREPTLDELLAEPSVRMLMARDGVDEAVLRK
                     IASEVRARLRKPAVQGSPPRAV"
     gene            complement(1622..1999)
                     /locus_tag="VE686_04810"
     CDS             complement(1622..1999)
                     /locus_tag="VE686_04810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009493875.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HYY83806.1"
                     /translation="MDNRTPTKPRRIAVVVDDEPDIRSLAALLLEESGLEVVEIASAD
                     EAFRYLTEHSSDVAVLFTDVVMPGRLTGDALAQVVSHNWPWIRVLVTSGYPQADLPER
                     AVYMPKPWRALDVLVEVDARRVA"
     gene            complement(2134..3069)
                     /locus_tag="VE686_04815"
     CDS             complement(2134..3069)
                     /locus_tag="VE686_04815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020810587.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-hydroxyacid dehydrogenase"
                     /protein_id="HYY83807.1"
                     /translation="MKPDILQTGAMPAIEAALNDAYTVHRLWDAADRDRFLAEVGPRI
                     RAIVTGGNYGASTALMNATPELGLIAVHGVGTDAVDLDLARARGIRVSVTAGVLTEDV
                     ADMALGLLLAVARRLAEGDRFVRAGKWPKDRFPLGRKVAGKRLGILGFGRIGQAIARR
                     AEGFGMVVSYTDLRAIDGMSQRFVPSLEEIARESDFLVIAASASAQSRGLVGRAVLDA
                     LGPEGILINIARGSIVDEPALVAALQEGRLGAAGLDVFVDEPNVPEALFNLDNVVLQP
                     HQASATEETRIEMGRNVLANLEAFFAGRPLPTALF"
BASE COUNT          484 a         1160 c         1187 g          487 t
ORIGIN      
        1 gtcgcgcggg tcgtggccgc gggacaggga caccatgcgg atcgcgcccg ccatgtgggt
       61 gtcggctagt ctcagggccg ccgccgccgc gtcctcgacc gagaggccca gcggtcgcgc
      121 cacctgctcg tcgaagtgcg tgcgcacctg ggccagcggc accggccgcg tgacggccag
      181 gagcccgccc ggatcgagcc ggccgagcac gatgtgcgcg tccgtcacgg taggccgggt
      241 tccgccgcgc ccgtaggcga tcgggcccgg atcggcgccg gcgctttccg gcccgacccg
      301 cagcatgccg gccttgtcga ccgacaccac cgagccgccg ccggcgccga cggttcgcac
      361 gtcgaccatc ggcacatgga tcggcaggcc gtaggcgatg gacagctcgg ccgagacctc
      421 gggcacgccg ccgcggatca gcgcgacgtc ggtcgaggtg ccgcccatgt cgtacgtgat
      481 ggcattgtcg acgcctgcct gcgcgagcgt cacggcagcg gccatgacgc cggacgcggg
      541 tccggacatg accgtcttcg ccgcctcgtc ggcgacgagc cgcgccgaga cggtgccccc
      601 gttgccgttc atgacgagca ggtcgcgcct gaacccgcgg gcggagagat cggcctgcag
      661 gcggccgaga tagcggtcga ggatgggctg cacggcggcg ttgacggacg ccgtcgtgcc
      721 gcgctcgtac tcccggtact cggacaggag cgcgtgcccc atggtgatgt agcggttcgg
      781 ccagatcgcc cttgcgatct cggccgcacg gcgctcgtgc gtcgggttgg cgtaggcgtg
      841 caggaagtgg atgacgaggg cctcgcactc cgcttcgatc agctcgcgca cccgcgccgc
      901 gacctcgtcc tcgtcgaggg cggtcagcac ctcgccccgc gcgctcatac gctcggtgac
      961 ctcgagccgc agctcgcgcg ggatcagagg ctcgaatgtg ccggtgaggc catagggctt
     1021 cggcctcgtg cgccggccga gctcgagggt gtcgcgaaag ccgcgagtgg tgatgagccc
     1081 gacgcgcgcc accttgcgct cgagcaccgc gttcgtcgtc gcggtggtgc cgtggacgat
     1141 gaggtcgatc tcggacgccg gcacgccggc ggcttcgagc gcatggatga cgccggcggc
     1201 ctggttgccg gcgctggtcg ggaccttggc gagccggacg cgaggcccct ccggtcccac
     1261 ctcatggagg aggaggtcgg tgaaggtccc gccgacgtcg atcccggcaa cccgccgcat
     1321 gccgcccccg tggaggccac gaccggaggc cgcccgatcg ttcgtacacg aaggatacgc
     1381 acgcttccgt ccaagcgtaa agtcgcgctg ctggttgcct cagacggccc gcggcggcga
     1441 gccctgcacg gcgggcttgc gcagccgcgc ccgcacttcg ctggcgatct tgcgcaggac
     1501 ggcctcgtcg acgccgtcgc gggccatcag catgcgcacc gagggctcgg caagcagttc
     1561 gtcgagggtc ggctcgcggt agccgctcac atcgaactgg cacagggccc ggaagggcat
     1621 ctcaggcgac ccgtcgtgcg tcgacctcga ccagaacgtc cagcgcccgc cacggcttcg
     1681 gcatgtagac cgcccgctcg ggaagatccg cttgcggata gccggatgtg acgagcacgc
     1741 ggatccacgg ccaattgtgg gagacgacct gcgcgagcgc gtccccggtg aggcggcccg
     1801 gcatgaccac gtccgtgaac aggaccgcca catcgctgga gtgctcggtc agatagcgga
     1861 aggcctcgtc ggcgctcgca atctcgacga cctcgagccc gctctcctcg aggagcagcg
     1921 cggcaaggct gcggatatcg ggctcgtcgt cgacgacgac cgcgatgcgt ctcggcttcg
     1981 taggcgtgcg gttgtccacc tcatgcctcc tcgcgatagg agccccggcg acgcatactg
     2041 atttttccgc agtgtctgcc agtcgcgcct ttggatcaac cccggtctac gacttttgga
     2101 caaagcattg cggtcgctca aagttgtcta aaatcagaag agtgcggtcg gcagcggtcg
     2161 gccggcgaag aacgcttcca ggttcgccag cacattgcgc cccatctcga tcctggtttc
     2221 ctcggtcgcg ctcgcctggt gcggctggag gacgacgttg tcgaggttga acaaggcctc
     2281 gggcacgttc ggctcgtcga cgaacacgtc gaggccggcg gcgccgagcc gcccctcctg
     2341 caatgccgcg acgagcgcgg gctcgtcgac gatgctgccg cgcgcgatgt tgatgagaat
     2401 gccctccggc ccgagcgcgt cgaggacggc acggccgacg agaccccgcg actgggcgct
     2461 cgccgaggcg gcgatgacca ggaagtcgct ctcgcgggcg atctcctcga gcgacggcac
     2521 gaagcgctgc gacatgccgt cgatggcacg caggtcggtg tacgacacca ccatgccgaa
     2581 cccctcggcg cggcgcgcga tcgcctggcc gatgcggccg aagccgagga tgccgagccg
     2641 cttgcccgcc accttgcgcc cgagcgggaa ccggtccttc ggccatttcc cggcgcggac
     2701 gaagcggtcg ccctcagcca gccggcgcgc gacggcgagc aggaggccga gcgccatgtc
     2761 ggccacgtcc tccgtcagca cgcctgccgt gacgctgacg cggatgccgc gcgcccgcgc
     2821 caggtcgaga tcgaccgcgt cggtgccgac cccgtgcacg gcgatgagcc cgagctcagg
     2881 cgtcgcgttc atgagggcgg tgctggcgcc gtagttgccg cccgtgacga tcgcccggat
     2941 acgggggccg acctcggcga ggaagcggtc gcgatcggcc gcgtcccaga gccggtgcac
     3001 cgtgtaggcg tcgttcagtg ccgcctcgat cgcgggcatg gccccggtct ggagaatatc
     3061 cggcttcatt cgcgacctcg tggggattgc ctggcgcggt ggggcccggc gacgcttcgg
     3121 gaaagaacga tcctgcgcca tgcagccgcc gcacatcaag gggccgctcg gtccccgaac
     3181 gcggttgcac cgccttcctc accgtctaca gtgccgatcc acgccgaacg cgacgtctcg
     3241 cgaagccggc gcatggttca ggggggaacg aggatggcga tcgcgcagcg tgggttgaag
     3301 gcgcatgtgg ctgggggc
//
LOCUS       DASQWN010000252         6546 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_517321, whole genome shotgun sequence.
ACCESSION   DASQWN010000252 DASQWN010000000
VERSION     DASQWN010000252.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 6546)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6546)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6546
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_517321"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1066)
                     /locus_tag="VE686_04820"
     CDS             complement(<1..1066)
                     /locus_tag="VE686_04820"
                     /inference="COORDINATES: protein motif:HMM:NF014051.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="oligosaccharide flippase family protein"
                     /protein_id="HYY83808.1"
                     /translation="MSSALIATGAKGTAVGHAQRSAATVFAIRVLGAGLAYGSQVLLA
                     RLMGKDAYGVFATTWVWILILGHVALFGLAQSVCRFVPAYRVRGELPLARGFIVTGAT
                     ATLASATLMALIGALLLWLGQGTINPIYVLPFAIALLVLPVFALQDYLEGVARSFNWM
                     TLAIAPPFIIRPALIAVTMAAVVWLGVRAEAWVAVACTLFATAVATSVQAARLVPRVR
                     RALQRGPRHHRRREWALATMPMAFGDLTLMALGFVDVLLLGLFVSAGEVGIYFAATRI
                     VQFVVFAQYAATAATAQRFSEIWAAGQHATLRTLVRRTARLTNVATAAFGGALLLGAP
                     LLLALFGPDFHASFDVLAILV"
     gene            complement(1109..2320)
                     /locus_tag="VE686_04825"
     CDS             complement(1109..2320)
                     /locus_tag="VE686_04825"
                     /inference="COORDINATES: protein motif:HMM:NF013646.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0071949 - FAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent monooxygenase"
                     /protein_id="HYY83809.1"
                     /translation="MTSSDCPEQAHSRAPATVREADVVIIGAGLAGALMAAILGRAGY
                     GVVLVDVHAVYPPDFRVEKIAGEQVALMRRLGFLDAFAASATRVDEIVNAASGRVIDR
                     TFGEHYSILYGDIVGVARAQIPPSVTFIVGRVADIETSSERQRITMSGGDVIEARLAV
                     LATGQGDVLRQKLGINRRVVFPKQSLTFGFSVRSDGAAARFPALTYYGEHPRDRIDYL
                     TLLPLGDSFRANLFTFCDHRDRWARAFRDDPKRLLLQVMPGLTTFLPDFDVLGKVQLF
                     MMDLSVVDDHVRDGAVLVGDAFQTSCPAAGTGVSRLLVDVDRLCNVHVPAWLGTPGMG
                     SDKIARFYSDPVKRAADTRASRAAEFRRALTVDTSVRWELRRREMYLRRRTVGWIAEH
                     VLPRRRAAATR"
     gene            complement(2328..2576)
                     /locus_tag="VE686_04830"
     CDS             complement(2328..2576)
                     /locus_tag="VE686_04830"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY83810.1"
                     /translation="MPPADGIDPLTYITTVSWARTVAQSGTDVGEMSEALDCVRAVGG
                     PTDLMDALDRRILRGFTIKLMLVGARIDAAGRSEMDEE"
     gene            2806..4017
                     /locus_tag="VE686_04835"
     CDS             2806..4017
                     /locus_tag="VE686_04835"
                     /EC_number="3.1.1.103"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012456605.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydrolase domain-containing protein"
                     /protein_id="HYY83811.1"
                     /translation="MGVKPEDVGLSSERLERIDGWMHGLVDAGKLAGVQTLVLRRGKV
                     AWQRHCGLADLARGKPMEPDTIFRIYSMTKPLTSVAVMMLYEEGRFQLDDPITRFLPS
                     FQNMRVFTGGARGRWESAPAEREITFRDLLTHTSGLTYGFMESTLVDAMYRDSGVDFQ
                     TSDKSLGEVVEIAASLPLLAQPGAEWNYSIAADVLGHLVAVISGRPFEDFLRERLIAP
                     LGMVDTDFHVPGDKLARLAANYTRGDDGRPKLIDDPFESRYAAPRNLCSGGGGLVSTA
                     ADYVRFCRFMLGKGALDGVRLLGRKTVELMTRNHLRGDMAEMGQPRFSESPYFGIGFG
                     LGFSVMLDPAKAQILGTPGEYAWGGAASTAFWIDPVEDMAVILMTQLMPSSTYPIRRE
                     LRVLSYQAIID"
     gene            complement(4059..4664)
                     /locus_tag="VE686_04840"
     CDS             complement(4059..4664)
                     /locus_tag="VE686_04840"
                     /EC_number="1.14.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF015925.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004497 - monooxygenase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="antibiotic biosynthesis monooxygenase"
                     /protein_id="HYY83812.1"
                     /translation="MHALLFEVLPTPEGRARYFEIAARLRPLLDENPGLLFIDRYESL
                     TRPGLILSHSLWRDEASLARWRSNETHYGAQCVGRRQLFEDYRLRIGMVVEEWTPTSG
                     RSSGSEEGAYNDPTVLPPRYFATVASHGAPVQIEGFEPFRSVYRPEESIAVGVLERAD
                     FDTVLARAGTARNVSCVRAALVARDYGMHERGEAPQFLARE"
     gene            4862..5467
                     /locus_tag="VE686_04845"
     CDS             4862..5467
                     /locus_tag="VE686_04845"
                     /inference="COORDINATES: protein motif:HMM:NF019590.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NIPSNAP family protein"
                     /protein_id="HYY83813.1"
                     /translation="MLYELLTAEVRPGTLGAAVQRLGETVAARGTSSGLLGCWTTEIG
                     QVNELVALSAVAGSLSVGEGVAGHWLASALTEFLVTARLEHLRLFPFLPEVQPGSFGR
                     VYELRNYVMKPGTTQETIERWEKALPERMERSKIIGAFHAVSGPLQKFVHIWPYDSAD
                     HRQRTRDEAVAAGIWPPKGGAERLLHMQNSLLIPTAFSPLR"
     gene            5637..5780
                     /locus_tag="VE686_04850"
     CDS             5637..5780
                     /locus_tag="VE686_04850"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY83814.1"
                     /translation="MIEMEFIWANAAVLVGAAIFIRVRLALLARKAAPIRAVRNHVPA
                     RAA"
     gene            5830..6333
                     /locus_tag="VE686_04855"
     CDS             5830..6333
                     /locus_tag="VE686_04855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012335280.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY83815.1"
                     /translation="MTGAATDDWQRILDWKLKAGSHPFPGPSGGTCINEAALIAAGFE
                     YQRIHSVEQMPACFSRPICGLAMMLNDDATDEQRQRLLPYVGRLACADTPAVERRRAA
                     FINWRTCFGFIAPRFEAGLRMLDRALAMGRDADLLPVADAKARTDAAKARGRTSSAAL
                     TDRGARS"
     gene            6376..>6546
                     /locus_tag="VE686_04860"
     CDS             6376..>6546
                     /locus_tag="VE686_04860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009763039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TerC family protein"
                     /protein_id="HYY83816.1"
                     /translation="MEDLAPNVIKILQIIWINIILSGDNAVVIALACRGLPPERQRVG
                     MIAGAGVAVGLRI"
BASE COUNT         1107 a         2202 c         2229 g         1008 t
ORIGIN      
        1 cgacgaggat ggcaaggacg tcgaagctgg cgtgaaagtc gggcccgaac agtgccagca
       61 ggagcggtgc gccaaggaga agagcaccgc cgaacgcagc ggtggcgaca ttggtcagcc
      121 gcgccgtccg gcgcaccagc gtgcgcaaag tggcatgctg cccggctgcc caaatctccg
      181 agaagcgctg cgcagtcgcg gcggtcgcgg cgtattgagc gaagacgacg aactgcacga
      241 tccgggttgc ggcgaagtag atgccgacct cacccgccga gacgaacagg ccgaggagga
      301 ggacatcgac aaagccgaga gccatcagcg tgaggtcgcc gaacgccatc ggcatggtgg
      361 ccagcgccca ctcgcgccgg cgatggtggc gcggcccgcg ttgcagcgcc ctgcgcaccc
      421 ggggtaccag gcgcgcggcc tggacgctgg tggcgacggc ggtcgcaaaa agcgtgcatg
      481 cgacagccac ccaggcctcg gccctgacgc cgagccagac gaccgccgcc attgtgacgg
      541 cgatcagggc cggccggatg atgaacggcg gggctatcgc cagggtcatc caattgaagc
      601 tgcgggcgac gccttcgagg taatcctgca gcgcgaagac cggaagcacc aggagcgcga
      661 tggcgaacgg cagcacgtag atgggattga tggtcccctg gcctaaccac agcagcagtg
      721 cccctatcag cgccatcagc gtcgcgctcg ccagcgtcgc ggtggcaccc gtcacgatga
      781 atccgcgggc cagggggagc tcgccccgaa cgcggtacgc cggcacgaag cggcagacgg
      841 actgcgcaag cccaaacagc gctacatggc cgaggatcag gatccacacc cacgtggtgg
      901 cgaagacgcc ataggcgtcc ttgcccatga ggcgggccag caggacttgg ctgccgtacg
      961 ccaggcccgc gccgaggacg cggatggcga acaccgtcgc ggccgagcgc tgggcgtgcc
     1021 cgaccgctgt ccctttcgct ccagtcgcga tcagggcgct cgacatgcgt tccacttcca
     1081 ggccgtcgtg aatgtcactg cagacctgct accgtgttgc cgctgcgcgc cgccgcggga
     1141 gcacgtgttc ggcgatccat ccaaccgtcc ggcgacgaag atacatctcc cgccggcgca
     1201 actcccatct cacgctcgtg tcgacggtca gggcccgccg gaactccgcc gcccggctgg
     1261 cacgcgtgtc ggcggcgcgc ttcaccgggt ccgaatagaa gcgcgcgatc ttgtccgagc
     1321 ccatgccggg cgtcccgagc catgccggga catggacgtt gcagagccgg tcgacgtcga
     1381 cgagcaggcg gctcacgccc gtgccggcgg ccgggcaaga ggtctggaaa gcgtcgccga
     1441 cgagcacagc cccgtcccgg acgtggtcgt cgacgacact caggtccatc atgaaaagct
     1501 ggactttccc aagcacgtcg aaatcgggca ggaacgtcgt caacccgggc atgacctgca
     1561 gcaacaggcg cttcggatcg tcgcggaagg cccgcgccca gcggtcgcgg tgatcgcaga
     1621 acgtgaagag attggccctg aagctatcgc cgagggggag gagggtcagg taatcgatgc
     1681 gatcccgagg atgctcgcca tagtaggtga gcgccgggaa acgagcggca gcaccatccg
     1741 agcggaccga gaagccgaag gtgagggact gcttcgggaa caccacccgc cggttaatac
     1801 caagcttctg gcgcagcacg tcgccctgcc cggtcgccag caccgcgagc cgtgcctcga
     1861 tcacgtctcc cccagacatc gtgatgcgct ggcgctcgga agaggtctcg atgtcggcga
     1921 ctcgcccgac gatgaacgtc acggagggcg ggatctgggc gcgcgcgacc ccgacgatat
     1981 ctccgtacag aatgctgtaa tgctcgccga acgttcgatc gatcacccgg cccgacgcgg
     2041 cattgacgat ctcgtccacc cgcgtcgcgc tggccgcgaa ggcatccagg aagccaagcc
     2101 ggcgcatgag cgcgacctgc tcgcccgcga tcttctcgac gcggaagtcg ggcgggtaca
     2161 ccgcgtgcac gtcgacaagc acgacgccgt accctgcccg gccgaggatg gcggccatca
     2221 gcgcgcccgc gagcccggcg ccgatgataa ccacgtcggc ttcgcggacc gtcgccggtg
     2281 cccgggaatg tgcctgctcg gggcagtctg agctcgtcat gagagggcta ctcctcgtcc
     2341 atctcggacc ggccggcggc gtcgatgcgg gcgccgacga gcatcagctt gatggtaaaa
     2401 ccacgcagaa tgcggcggtc gagcgcgtcc atgagatccg tcggaccgcc tacggcgcgc
     2461 acgcagtcga gcgcctcgga catctcgccg acgtccgtgc cggactgggc cacggtccgg
     2521 gcccacgaca ccgtcgtgat gtaggttagc gggtcgattc cgtccgcggg tggcacaggc
     2581 tgctcgattc cggtggcgtg cgccggaaca ggcgcaagcg gcggaccacc gcgggaaggg
     2641 ccgcgccagc gcgtctgaca gcagctacac ccagtatggt cggccgaggg tagaccgccg
     2701 caggcagctc gccgcaggct tgtgatgggc cattgcaagg tccggctcgc cgggcgacct
     2761 tggcgcggtc tcgtttcggg agggagccac ttcgtggacg gtagcatggg cgtcaagccg
     2821 gaggatgtag ggctttcctc cgagaggctc gagcggatcg acggctggat gcacgggctc
     2881 gtcgatgccg gcaagcttgc cggcgtccag acgctggtgc tccggcgagg caaagtcgcc
     2941 tggcaacggc actgcgggct cgccgatctc gcccgcggca agccgatgga gcccgatacg
     3001 atcttccgca tctactccat gacgaagccg ctcacctcgg tggcggtcat gatgctctac
     3061 gaggaggggc ggtttcagct cgacgatccg atcacgcgct tcctgccctc gttccagaac
     3121 atgcgggtgt tcaccggggg cgctcgcggc agatgggaga gcgcgccggc cgagcgcgag
     3181 atcacctttc gcgacctcct gacccatacg tcgggcctga cctacggctt catggaatcg
     3241 acgctcgtcg atgccatgta ccgcgacagc ggcgtcgatt ttcagacctc ggacaagagc
     3301 ctcggcgagg tcgtggagat cgccgcctcc ttgccgctcc tagcgcagcc cggggccgag
     3361 tggaactact ccatcgcggc cgacgtgctc ggccacctcg tcgccgtgat ctcgggccgg
     3421 ccgttcgagg atttcctgcg cgagcggctc atcgcaccgc tcggcatggt cgataccgat
     3481 ttccatgtgc cgggcgacaa gctcgcccgg ctcgcggcaa actacacccg tggcgacgac
     3541 ggtcgcccga agctgatcga cgaccctttc gagagccggt acgccgcgcc gcgcaacctc
     3601 tgctcaggag gcggcggcct cgtgtcgacg gcagccgatt acgtgcgctt ctgccgcttc
     3661 atgctcggaa agggcgcgct cgacggtgtc cgcctcctcg gccgcaagac cgtcgagctg
     3721 atgacaagga accacctgcg cggcgacatg gccgagatgg gccagccgcg cttctccgag
     3781 tcgccttact tcggaatcgg attcggcctc ggcttctcgg tgatgctgga tcccgccaag
     3841 gcccagatcc ttggaacgcc cggcgaatac gcctggggcg gcgcagccag cacggctttc
     3901 tggatcgacc cggtcgagga catggccgtg atcctcatga cccagctcat gccgtcttcg
     3961 acatacccga tcaggcgaga gctgcgtgtg ctgagctatc aggccattat cgactgagac
     4021 agggctcggc gctcagcgct gctcacgcat cgccacatct attcgcgcgc gagaaattgc
     4081 ggcgcctcgc cacgctcatg catgccgtaa tcgcgcgcca cgagggctgc ccggacgcac
     4141 gagacgttcc gcgcggtccc cgcacgagcg aggacggtgt cgaaatccgc gcgctcgagg
     4201 acgccgacgg cgatgctctc ctcgggacgg tagacactcc gaaacggctc gaatccctcg
     4261 atctgaacgg gcgctccgtg gctcgcgacg gtggcaaagt agcggggagg cagcaccgtc
     4321 gggtcgttgt aggcgccctc ttccgacccc gaggacctgc cggatgtggg cgtccactcc
     4381 tcgacgacca tgccgatgcg caggcggtag tcctcgaaca gctggcgccg tccgacgcat
     4441 tgcgcaccgt agtgcgtctc gttgctgcgc catcgcgcga ggctggcctc atcgcgccag
     4501 agcgagtgcg acaggatcag tcctggccga gtgagactct cgtaccggtc gatgaaaaga
     4561 agcccgggat tctcgtcgag cagggggcgc agccgcgcgg cgatctcgaa gtagcgtgcc
     4621 cggccctccg gcgtcggcag gacctcgaat aacagcgcgt gcaagcgcga cctccatcca
     4681 actgcggcct cgtttcagct gccgtccgat ccgccgctct gcgactagcc cgctcgagag
     4741 ccgaagccaa gcttggctcg ttggtgaagg gacgtgaggg cccgcggcga cggtgcgggg
     4801 cagcggcttt cgttgcgcca actgccccgc tagggtcctc tcgttccgat ggagaggtgc
     4861 gatgctgtac gagttgttga ccgccgaggt gcgtccgggg acgctggggg ctgccgtgca
     4921 gcggctcggc gaaaccgttg cagcgcgcgg cacaagttcc ggccttctcg ggtgctggac
     4981 caccgagatc ggccaggtga acgagctcgt ggcgttgtcg gcggttgctg ggagcctctc
     5041 cgtgggcgag ggggtcgcag gacactggct cgcttcggcg cttaccgagt tcctggtcac
     5101 cgcgcgcctc gagcaccttc gtctgttccc gttccttcca gaggtccagc cggggtcgtt
     5161 cggccgagtc tacgagctcc gcaactatgt catgaagccc gggacgaccc aggagacgat
     5221 cgagaggtgg gagaaggcgc tgccggagcg tatggagcgc tccaagatca tcggagcctt
     5281 ccacgccgtc agcggccctc tgcagaagtt cgtccacatc tggccctacg acagcgccga
     5341 ccatcgccag cggacgcggg acgaagcggt cgcggcgggc atctggccgc cgaagggcgg
     5401 ggccgagaga ttgctgcaca tgcagaacag cttgctcatt ccgaccgcgt tctcgccgct
     5461 tcggtagccg acgcggccgg aagcgcaggc ggcggccctc agcgggtccg gcgtctcctc
     5521 ccatcgagag tccagcagtt ctgaattgga aagtcgctgc gctaccgcct cggcggtggg
     5581 cgaggcacag tgcgcgcggc gcctgcgccg agctcgcggc tctccaaggc aagtccatga
     5641 tcgagatgga attcatctgg gccaacgccg ccgtcctggt cggggcggcc attttcattc
     5701 gggtgcgcct cgcgctgctt gcgcgcaagg cggcgcctat ccgcgctgtg cgcaatcacg
     5761 tccctgcccg cgcggcgtga ggcgttccgg cgctcttgat gagcgctgga cggttgtgga
     5821 ggtatcccgg tgacaggagc ggcgacggac gactggcagc gcatccttga ttggaagctg
     5881 aaggccgggt cgcacccctt cccgggccca agcggtggca cctgcatcaa cgaagccgcg
     5941 ctgatcgcgg cggggttcga gtaccagcgc atccattccg tcgagcagat gccggcctgc
     6001 ttctcgcgtc cgatctgcgg cctcgccatg atgctgaacg acgatgcgac cgacgagcag
     6061 aggcagcggc tgctgcctta cgtggggcgg ctagcctgcg ccgacacgcc ggccgtcgag
     6121 cgtcgccgcg ccgctttcat caattggcgc acgtgcttcg gcttcattgc gcctcgcttc
     6181 gaagccgggc tcaggatgct cgatcgggcg ctggccatgg gccgggatgc ggaccttctg
     6241 cccgttgccg acgcgaaggc acggaccgac gccgcaaaag caaggggccg caccagctct
     6301 gccgccctca ccgaccgcgg cgcgcggtcc tagacgccga caagaccagc cgatcagccc
     6361 aagaccgagt gctccatgga agaccttgcg ccgaacgtca tcaagatcct gcagatcatc
     6421 tggatcaaca tcatcctgtc tggcgacaac gccgtcgtga tcgcgctggc gtgccgcggc
     6481 ttgccgccgg agcggcagcg ggtcggcatg atcgccggcg ccggcgtcgc ggtcggcttg
     6541 cgcatc
//
LOCUS       DASQWN010000253         2645 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_738561, whole genome shotgun sequence.
ACCESSION   DASQWN010000253 DASQWN010000000
VERSION     DASQWN010000253.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2645)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2645)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2645
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_738561"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1338)
                     /locus_tag="VE686_04865"
     CDS             complement(<1..1338)
                     /locus_tag="VE686_04865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019402428.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HYY83817.1"
                     /translation="MRSVTRLVAFAFLAAVAAQPAIAGKRDGLVRFAYDQAPENVDPF
                     FNNVRIGVIIGQHVWDTLVYRDPNTGEYKGQLATAWRQIDDKTIEFDLRQGVKFHNGE
                     EFDADDVVYTMNFVGKAESKVVTQSNVSWIAGAEKVDRYKVRVKTKTVFPAAIEYLAG
                     PVVIHPNEYYEKVGPKGMNEKPVGSGPYRVTNHVFGKSITLEKNPDYFKDSPKGQVKG
                     VQKIEIRIIPDRQTQLAELLSGGVEFVMNVRKDQADQVKSVPNLQVVSGETMRIAFLH
                     FNAQDSSAFAPLKDVRVRRALNHAIDRESMVKNLVGESARVIHTICFPSQFGCTDEGA
                     PRYEYNPQKAKQLLAEAGYKDGFEVPLVAYRERDQTEAMIGYLQAVGVKANHSFLQYA
                     AMRDLVRGNKAGLAHQTWGSFSVNDVSASTPYYFGMTDDDMTHDPEVKALLDKG"
     gene            complement(1417..2169)
                     /locus_tag="VE686_04870"
     CDS             complement(1417..2169)
                     /locus_tag="VE686_04870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015930271.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HYY83818.1"
                     /translation="MSGGQRSSAATTDSGGLGFRPLYRQVRELLVRRIADGLWAPGQP
                     IPSEPEIATELGVSQGTVRKALDEMAGENLVVRRQGRGTYVARHDDARILFQFFRIVP
                     DSGAKEFPDSRLIEVAEEEVDEEAGRALALLSGAAVVRLERVRSLAGEVCIAERIVVP
                     AALFPGLAERELPNNLYELYAAQFGIVIGRASEKLRAVAAGAHEAELLGVAPSAPLLR
                     VDRTAISIDGKLVEWRVSWCRTERVHYLSDLR"
     gene            2260..2547
                     /locus_tag="VE686_04875"
     CDS             2260..2547
                     /locus_tag="VE686_04875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012564683.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UxaA family hydrolase"
                     /protein_id="HYY83819.1"
                     /translation="MGVPHLLVHDKKDTVGVVVVEGLKAGTEMLGVVTADNSDFRLKA
                     NHDIPIGHKAALVDIKSGDTIWKYGQDIGKAIADIGKGDHVHVHNVKTKRW"
BASE COUNT          435 a          865 c          878 g          467 t
ORIGIN      
        1 gcccttgtcg aggagcgcct tcacctccgg gtcgtgagtc atgtcgtcgt cagtcatacc
       61 gaaatagtac ggcgtcgacg ccgacacgtc gttgaccgaa aacgagcccc acgtctggtg
      121 cgcaagcccg gccttgttgc cgcggacgag atcacgcatg gcggcgtact ggaggaagct
      181 atggttcgcc ttgacgccga cggcctggag gtagccgatc atcgcctccg tctggtcgcg
      241 ctcccggtag gccacgagcg gcacctcgaa gccgtccttg tatccggcct cggcgagcag
      301 ctgctttgcc ttctgcgggt tgtactcgta gcgcggcgcg ccctcgtcgg tgcagccgaa
      361 ctgcgacggg aagcagatgg tgtggatcac ccgcgcgctc tcgccgacga ggttcttgac
      421 catgctctcg cggtcgatgg cgtggttgag cgcgcggcgg acacgtacgt ccttgagcgg
      481 tgcgaaggcg gacgagtcct gcgcattgaa atgcaggaag gcgatgcgca tcgtctcgcc
      541 cgagaccacc tgaaggttcg gcaccgactt cacctggtcg gcctgatcct tgcggacgtt
      601 catgacgaac tcgacgccgc cggagagaag ctcggcgagc tgcgtctgcc ggtccggaat
      661 gatgcggatc tcgatcttct ggacgccctt cacctggcct ttgggcgagt ccttgaagta
      721 gtccgggttc ttctcgagcg tgatcgactt gccgaagacg tggttcgtca cccggtacgg
      781 ccctgagccg accggcttct cgttcatgcc cttggggccg accttctcgt agtactcgtt
      841 cggatggatc accactggcc cggcgaggta ctcgatggcg gccgggaaca ccgtcttggt
      901 cttgacgcgg accttgtacc tgtcgacctt ctcggccccg gcgatccagc tcacgtttga
      961 ctgcgtgacg accttgctct cggccttccc gacgaagttc atggtgtaga ccacgtcgtc
     1021 cgcgtcgaac tcctcgccgt tgtggaactt gacgccctgg cgcaggtcga actcgatggt
     1081 cttgtcgtcg atctgccgcc aggcggtggc gagctggccc ttgtactcgc ccgtgttcgg
     1141 gtcgcggtag acgagcgtgt cccaaacgtg ctggccgatg atcacgccga tgcgcacgtt
     1201 gttgaagaac gggtcgacgt tctcgggcgc ctggtcgtag gcgaacctga cgaggccgtc
     1261 gcgcttgccc gcgattgccg gctgggcggc gactgcggcg aggaacgcaa aagcgacgag
     1321 gcgcgtgacg gatcgcatct tcaaatttcc cttgtgacga gggccgcatc tgaaccgccg
     1381 cccggtcggc ggtcaagaat gggccggttg taacggttag cgcaggtccg agaggtaatg
     1441 cacgcgctcg gtccggcacc acgacacgcg ccactcgacg agcttgccgt cgatcgagat
     1501 ggcggtgcga tcgacgcgca ggagcggcgc gctcggcgcg acgccgagaa gctccgcctc
     1561 atgcgcgccc gccgcgacgg cgcgcagctt ctcgctcgcc cgcccgatca cgatgccgaa
     1621 ctgcgccgcg tagagctcgt agagattgtt cggaagctcg cgctcggcga ggcccgggaa
     1681 cagagccgcc ggcaccacga tgcgctcggc gatgcagacc tcgccggcaa gcgagcgcac
     1741 ccgctcgagc cgcacgacgg cagccccgga gagaagcgcg agggcgcgtc cggcctcttc
     1801 gtccacctcc tcctccgcga cctcgatgag gcggctgtcg gggaattcct tggcgcctga
     1861 gtccgggacg atgcggaaga actggaacag gatgcgcgcg tcgtcgtggc gcgccacgta
     1921 tgtgccccgc ccttgcctgc gcaccaccag gttctcgccg gccatctcgt cgagggcctt
     1981 gcgcacagtg ccctggctga cgccgagttc ggtcgcgatc tccggttcgc tcgggatcgg
     2041 ctgccccggc gcccacaagc cgtcggcgat gcgccgcacg aggagctcgc gcacctggcg
     2101 gtagagcggc cggaagccga gtccaccgga atcggtggtc gccgcggacg agcgctggcc
     2161 accgctcatt ccggcgcccg aggggtgttg acgatcatgt catctgtctt atacaagact
     2221 gcctgcacag gcaaacggcc cgcgtttggg gaggacacct tgggagttcc gcatctcctg
     2281 gttcacgaca agaaggacac cgtcggcgtc gtcgtggtgg aaggcctcaa ggccggcacc
     2341 gagatgctcg gcgtcgtgac cgccgacaac tcggattttc ggctcaaggc caaccacgac
     2401 atcccgatcg gccacaaggc ggccctcgtg gacatcaagt cgggcgacac gatctggaag
     2461 tacgggcagg atatcggcaa ggcgatcgcc gacatcggca agggcgacca cgtgcacgtc
     2521 cataacgtga agacgaagcg ctggtgagcg tcatcctggg gccgcgcagc ggacccgagg
     2581 acctcatgca ggacagagct ggacacacac actccgaggt cctcggcttt aagcgctgac
     2641 gcgct
//
LOCUS       DASQWN010000254         3771 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_418110, whole genome shotgun sequence.
ACCESSION   DASQWN010000254 DASQWN010000000
VERSION     DASQWN010000254.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 3771)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3771)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3771
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_418110"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            164..1405
                     /gene="ftsY"
                     /locus_tag="VE686_04880"
     CDS             164..1405
                     /gene="ftsY"
                     /locus_tag="VE686_04880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009490729.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005047 - signal recognition particle
                     binding [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="signal recognition particle-docking protein
                     FtsY"
                     /protein_id="HYY83820.1"
                     /translation="MAESDKPGFLGRLFGRKAETSADMPRHTGASESEGAPDLTTAAA
                     AGELPALEPKVASASPETRADDKPPVELKGADLQPVEGRDPEGGGPKEPIPRAEPQPA
                     GPAKTNWWGRLTEGLRRTSSSLSESVTSLFTKRKLDAATLEDLEDALVQADLGVATAA
                     RIAEAVGHGRYDKEISPDEVRRILADEVEKALAQAAQPLTIDHAKKPFVILMTGVNGA
                     GKTTTIGKLAQKFRGQGMKVTLAAGDTFRAAAIEQLKVWGERTGAPVITRPQGSDAAG
                     LAYDALAEAKAHGADVLLIDTAGRLQNKAGLMSELEKIVRVLKKLDESAPHATLLVLD
                     ATVGQNAVSQVELFRKSAGVTGLVMTKLDGTARGGILVALAAKFGLPVHFIGVGEGVE
                     DLEPFAARDFARAIAGLDQAA"
     gene            1402..2013
                     /locus_tag="VE686_04885"
     CDS             1402..2013
                     /locus_tag="VE686_04885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020090710.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="septation protein A"
                     /protein_id="HYY83821.1"
                     /translation="MTQPKRLNPFLKLALELGPLVVFFLVNANGERFGVPDDRRIYVA
                     TAVFIVATMLSLGAGYVLLRKLPIMPLVSGVVVVLFGGLTLALQDELFIKLKPTIVNS
                     LFGLVLLGGVYFRKPLLAIVLDSMFDLTDEGWRKLTLRWAAFFFVLAALNEIVWRTQS
                     TDFWVSFKVFGIMPLTIAFALAQTPLLMRYDTKKDEPPATEKA"
     gene            complement(2035..2625)
                     /locus_tag="VE686_04890"
     CDS             complement(2035..2625)
                     /locus_tag="VE686_04890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015951122.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DsbE family thiol:disulfide interchange protein"
                     /protein_id="HYY83822.1"
                     /translation="MTQAPSGTLERTERRIRFVHVLPLLIFGALAVLFLVRLFTGDPT
                     RIPSALVGKPAPAFALAPLPGLLRDGKPSPGFDSDSLKGNVTVVNVWASWCAPCRQEH
                     PLLMQLSKAPGLRLVGINYKDATENARRFLGTFGDPFAAVGVDPNGRTAIDWGVYGVP
                     ETFIVGPDGIIRHKHIGPLTPEAMPAFMAKLRDASR"
     gene            complement(2622..2795)
                     /gene="ccmD"
                     /locus_tag="VE686_04895"
     CDS             complement(2622..2795)
                     /gene="ccmD"
                     /locus_tag="VE686_04895"
                     /EC_number="7.6.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013217200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0015886 - heme transport [Evidence IEA];
                     GO_process: GO:0017004 - cytochrome complex assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="heme exporter protein CcmD"
                     /protein_id="HYY83823.1"
                     /translation="MNLGPHAFFIAAAYVVTGFVVLGLVARAVVDHRIQARRLAELEA
                     RGMRRRSAGSSAA"
     gene            complement(2801..3544)
                     /locus_tag="VE686_04900"
     CDS             complement(2801..3544)
                     /locus_tag="VE686_04900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019401332.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme ABC transporter permease"
                     /protein_id="HYY83824.1"
                     /translation="MADLHFLANPARFRRFSQRVLPGLTLATVLGFAVGLYLALLQSP
                     PDYQQGDTVRIMFVHVPSAWLSMAGYALLAGLGASLLVWRHPLAALMARAAAPVGACF
                     ALVCLATGSLWGRPMWGTYWVWDARLTSVLVLFLIYCGILSLWRTIEEPNQAARAVAI
                     LTLVGAVNVPIVKFSVDWWNTLHQPASVLRAGGPAIDPSMLYPLLAMAAAFTVLGLAL
                     HVAGMRTEILRRRVRTATILEAERLDAAA"
     gene            complement(3579..>3771)
                     /locus_tag="VE686_04905"
     CDS             complement(3579..>3771)
                     /locus_tag="VE686_04905"
                     /inference="COORDINATES: protein motif:HMM:NF015344.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015232 - heme transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0015886 - heme transport [Evidence IEA];
                     GO_process: GO:0017004 - cytochrome complex assembly
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="heme exporter protein CcmB"
                     /protein_id="HYY83825.1"
                     /translation="GALLALLALPLCVPTLIFGSAAIETLMTGEDLWAHIAILAALAL
                     VALATTPWAMAAALRQAGE"
BASE COUNT          626 a         1288 c         1344 g          513 t
ORIGIN      
        1 agggtcgaag ggttggcgcc ccagcgggcc cgagacatcg gggccatcac caggtcgggc
       61 gtcgcggtag agcacccgcg ccactatctc ttccgcaggc atgacccgtt cggctatcga
      121 agcgccgact gcggagcaag cgagggcgag gcaagagaac gcgatggcgg agagcgacaa
      181 gccgggtttc ctcgggcgcc tgttcgggcg caaggccgag acgtcggccg acatgccgcg
      241 ccatacgggc gcgtcggagt cggagggggc gcctgatctg accaccgccg ccgctgccgg
      301 cgagcttccg gcgctcgagc cgaaggtcgc gagcgcgtcg cccgagacgc gggcggacga
      361 taagccgccc gtcgaactca agggcgccga cctgcagccc gtggagggtc gcgatccgga
      421 gggcggcggc cccaaggagc cgatcccgcg cgccgagccc cagccggccg ggccggccaa
      481 gacgaactgg tggggccgcc tcaccgaagg cctgcgccgc acctcgtcgt ccctgagcga
      541 gagcgtcacg agcctgttca ccaagcgcaa gctcgacgcc gcgaccctcg aggacctgga
      601 ggacgccctg gtccaggccg acctcggcgt cgcgacggcg gcgcgcatcg ccgaggccgt
      661 gggacacggg cgctacgaca aggagatctc gcccgacgag gtccgccgca tcctggcgga
      721 cgaggtcgag aaggccctcg cgcaggccgc ccagcccctc acgatcgacc acgccaagaa
      781 gcccttcgtg atcctgatga cgggcgtgaa cggggccggc aagacgacga ctatcggcaa
      841 gctcgcccag aagttccggg gacagggcat gaaggtgacg ctggcagccg gcgacacctt
      901 ccgggccgcc gccatcgagc agctcaaggt ctggggcgag cgcaccggcg cgccggtgat
      961 cacgcggccg caaggctcgg acgccgccgg tctcgcctac gacgccctgg ccgaggcgaa
     1021 ggcgcacggc gccgacgtcc tcctcatcga cacggcgggg cgcctgcaga acaaggccgg
     1081 gctcatgagc gagctcgaga agatcgtccg cgtcctgaag aagctcgacg agagcgcgcc
     1141 ccacgcgacg cttctcgtcc tcgacgccac cgtgggacaa aacgcggtca gccaggtgga
     1201 attgttccgg aaaagcgccg gtgtcaccgg cctcgtcatg accaagctgg acggtacggc
     1261 acggggcggg atattggtgg cgctcgcggc gaagttcggg ttgcccgtgc acttcatcgg
     1321 cgtcggtgag ggcgtcgagg acctcgagcc cttcgcggcg cgcgattttg cccgcgcgat
     1381 cgcgggcctg gaccaggcgg catgacgcaa ccgaaacggc tgaacccctt cctcaagctc
     1441 gccctcgagc tcgggcctct cgtggttttc ttcctggtca atgccaacgg cgagcgcttc
     1501 ggcgtccccg acgaccgccg catctacgtg gcgacggcgg tgttcatcgt cgcgacgatg
     1561 ctgtcgctcg gcgctggcta cgtcctcttg cgcaagcttc ccatcatgcc gctcgtgtcc
     1621 ggcgtggtgg tggtgctctt cggcgggctc acgctcgcgc ttcaggacga gctcttcatc
     1681 aagctcaagc cgaccatcgt gaactcgctg ttcgggcttg tgcttctcgg cggcgtctac
     1741 ttccgcaagc cgctcctcgc gatcgtgctc gattcgatgt tcgatctgac ggacgagggc
     1801 tggcgcaagc tcaccttgcg ctgggcggcg ttcttcttcg tgctggccgc cctcaacgag
     1861 atcgtctggc gcacgcagtc gaccgatttc tgggtcagct tcaaggtttt cggcatcatg
     1921 ccgctgacca tcgccttcgc cctcgcccag acgccgctcc tgatgcgcta cgacaccaag
     1981 aaggacgagc ctccggcgac cgagaaggcc tgaccgcacc ctcggctgcg gccgtcatcg
     2041 cgacgcgtcg cgcagcttcg ccatgaaggc cggcatcgcc tcgggcgtga gcgggccgat
     2101 gtgcttgtgg cggatgatcc cgtccgggcc gacgatgaag gtctcgggca cgccgtagac
     2161 gccccagtcg atggccgtgc gcccgttcgg gtcgacgccc acggccgcga aagggtcgcc
     2221 gaaggtgccc aggaagcgcc gcgcgttctc ggtcgcgtcc ttgtagttga tgccgacgag
     2281 ccgcaggccc ggcgccttgg acagctgcat caggagcgga tgctcctggc ggcacggcgc
     2341 gcaccacgag gcccagacgt tcacgacggt gacgttgccc ttgaggctgt cgctgtcgaa
     2401 ccccggcgag ggcttgccgt cgcgcaacag cccgggcagg ggcgccagcg cgaacgccgg
     2461 ggcgggcttg ccgacaagcg ccgacgggat cctcgttggg tcgccggtga acaaccggac
     2521 caggaacagc accgcaagcg cgccgaagat gagaagcggg aggacgtgga cgaagcggat
     2581 gcgccgctcg gtccgctcca aggtgccgga cggagcttgc gtcatgcggc gctgctcccc
     2641 gcggagcgcc ggcgcatgcc gcgcgcctcg agttcggcga gccggcgcgc ctggatccgg
     2701 tgatcgacga ccgcgcgagc gacgagcccg agcaccacga accctgtgac gacgtaggcg
     2761 gcggcgatga agaaggcgtg cggaccgagg ttcatgggtc tcaagcggct gcgtcgaggc
     2821 gctcggcctc gaggatcgtt gccgtacgca cgcgccgccg gaggatctcg gtgcgcatcc
     2881 cggcgacgtg cagcgcgagg cccagcaccg tgaaggcggc cgccatggcg aggagcggat
     2941 agagcatgct cggatcgatc gcggggcctc cggcacgcag caccgacgcg ggctggtgca
     3001 gggtgttcca ccagtcgacc gagaacttga cgattggcac gttgacggcg ccgacgaggg
     3061 tcaggatcgc cacggcgcgc gccgcctggt tcggctcctc gatggtgcgc cacagggaga
     3121 ggatgccgca gtagatcagg aacagcacca gcaccgaggt gaggcgcgcg tcccacaccc
     3181 agtaggtgcc ccacatcggc cgcccccaca gcgaaccggt ggcgaggcac accagcgcga
     3241 agcaggcgcc gaccggtgct gcggcgcgcg ccatcagcgc ggccagcgga tggcgccaga
     3301 ccagcagcga ggcgcccagc cccgcaagca gcgcatagcc tgccatggac agccaggccg
     3361 acggcacgtg cacgaacatg atgcgtaccg tgtcgccctg ctggtaatcg ggcggcgact
     3421 gcagcagcgc gagatagagg ccgaccgcga agcccagcac agtggcgagc gtcaggcccg
     3481 gcaacacgcg ctggctgaag cggcggaagc gcgccgggtt ggcgaggaaa tgcaggtcgg
     3541 ccatttctgc cctgtgtcgg tccttgagcg gttcttgtct attcgccagc ctgccgcaag
     3601 gcggcggcca tggcccacgg ggtggtggcc agcgccacca gcgccagcgc ggcaagaatg
     3661 gcgatatggg cccaaaggtc ctcgcccgtc atcagggtct cgatggcggc ggagccgaag
     3721 atcagggtgg gcacgcagag cggcagggcc agcagggcca gcaaagcgcc g
//
LOCUS       DASQWN010000255         2439 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_120784, whole genome shotgun sequence.
ACCESSION   DASQWN010000255 DASQWN010000000
VERSION     DASQWN010000255.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2439)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2439)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2439
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_120784"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            249..1001
                     /locus_tag="VE686_04910"
     CDS             249..1001
                     /locus_tag="VE686_04910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018045214.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatase PAP2 family protein"
                     /protein_id="HYY83826.1"
                     /translation="MPLFDHATALAVRFRLNEVGPLLSFLALSLGTWGFVALAGEVRE
                     GDTAALDRTILLSLRTAGDRSDPIGPAWLEEAARDITALGGHTVLTIVTVTVLVYLML
                     TRRRAAAAVVLIAVGGGMLLSTGLKLGFERPRPDLVPHGTRVYTASFPSGHSMLSAIT
                     YLTLGALLARVERAWRVRIFLVAVAVVLTLIVGVSRVYLGVHWPTDVLAGWCGGAAWA
                     SLCWFVALQLQRKGQVEAPGEGAPGGVVTTPQ"
     gene            complement(985..>2439)
                     /locus_tag="VE686_04915"
     CDS             complement(985..>2439)
                     /locus_tag="VE686_04915"
                     /inference="COORDINATES: protein motif:HMM:NF028178.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TAXI family TRAP transporter solute-binding
                     subunit"
                     /protein_id="HYY83827.1"
                     /translation="PLGAMLGRATMQRLKGFYSSGGESARVNESFIDRLWRTDRVYPL
                     AILGLVVVGCLAALGYWYISAPTQYVVAVAPREGPEAKLLDAFREALREERRDIRLTV
                     QPFDDLKQTAQALQDRRVHLAVVRPDVLLPTNGLTIGILREEALIVAAPESGDVDDFT
                     DLAKKRLGVVPHHEADLAAIESVLAHYDLQNSNVALVMLGPDEVEAAVKAKRVDAVAF
                     LAPAVGERAGRIVRAVARASNDKVRIVPVAESEAFGLRNPALTPATIPPGALIGRPQI
                     PKEEVKTIAVSYRLMARSGLDRGPISKVTEYLFQLRSRIARATAAIHLMKAPENENAT
                     SAPLPNHPGAVDYFNREQMTFMDRYGDWLWLAVFAAGGLSSALAWVAQLFRRRRRELV
                     DEVLERLADILHEARTSEAVAQLDELTREIDGLVATSLRYARQRTTPTRIVTALMLAI
                     DSARSAIGDRRRDIDQGAAQTAARAEPRRITAAS"
BASE COUNT          347 a          817 c          867 g          408 t
ORIGIN      
        1 ctgccccgtc gcgagccgga ggtcggcgag ccggaaggcc gggcgttcgt cgagccgcac
       61 gacctcaccg atgtacgcga ggagcttggc gaggcgcgcg acggccgcct cgggaacgcg
      121 cgcgggactg gcggcttgca tcgacggcaa tgacctgttc gcaatgtgtt ctagggtcgg
      181 acctgggacg ggggccgtca agccgctatc gtgcaacccg cgcgccgcac gctcgtttgg
      241 tccgcaccat gcctcttttc gatcacgcca ccgcgcttgc cgtccgcttc cgcttgaacg
      301 aggtcgggcc gctgctgtcg ttcctggccc tgagcctcgg aacctggggc ttcgtcgcgc
      361 tcgccggcga ggtccgcgag ggcgacaccg ccgccctcga ccgcacgatc ctcctcagcc
      421 tacgcacggc gggcgaccgg tcggatccga tcgggccagc atggctcgaa gaggccgcgc
      481 gggacatcac ggcgcttggc ggccacacgg tgctgacgat cgtcacagtg acggtgcttg
      541 tctacctgat gctgacgcgc cgacgcgccg ccgcggccgt cgtgttgatc gccgtcggcg
      601 gagggatgct gctcagcacc gggttgaagc tcggattcga gcggccgcgg ccggatctcg
      661 tcccccacgg cactcgggtg tacacggcga gcttcccgag tgggcactct atgctgtccg
      721 cgataaccta cctgacgctc ggcgccctcc tcgcccgtgt cgaacgagct tggcgggtcc
      781 gcatcttcct cgtcgcggtt gccgtcgtgc tgacgctcat cgtcggcgtg agtcgcgtct
      841 atctgggcgt gcactggccg accgacgtgc tcgcgggctg gtgcggcggc gcggcgtggg
      901 cttcgctgtg ctggttcgtg gcgcttcagc tccagcgcaa gggtcaggtc gaggcgcccg
      961 gcgagggcgc gccggggggc gtcgttacga cgccgcagtg atgcggcgcg gctccgcgcg
     1021 ggctgccgtt tgggccgccc cctgatcgat atcccgtcgc cggtcgccga ttgccgagcg
     1081 ggccgagtcg atggcgagca tgagcgcagt gacgatccga gtcggtgtgg tgcgctggcg
     1141 cgcatagcgc agcgacgtcg cgacgaggcc gtcgatctcg cgcgtgagct cgtcgagttg
     1201 tgcgacggcc tcggaggtcc gagcctcgtg caggatgtcg gcgaggcgct ccaggacctc
     1261 gtcgacgagc tcgcggcggc ggcgcctgaa cagctgggcg acccacgcca gcgccgagct
     1321 gaggccgccg gccgcgaata ccgcgagcca cagccagtcg ccatagcggt ccatgaacgt
     1381 catctgctcg cggttgaaat aatcgaccgc gcccgggtgg ttcggcagcg gcgcgctcgt
     1441 agcgttctcg ttctcgggcg ccttcatcag atggatggcc gcggtggcgc gcgcgatgcg
     1501 cgagcgcagc tggaacaggt actccgtcac cttggagatg gggccgcggt cgaggcctga
     1561 gcgcgccatt agccggtacg acactgcaat ggtcttgacc tcttccttcg ggatctgcgg
     1621 ccggccgatc agggcgccgg ggggaatggt cgcgggagta agcgcagggt tcctgagccc
     1681 aaacgcttct gactcggcga ccgggacgat gcggaccttg tcgttcgacg cgcgcgcaac
     1741 cgcgcgcacg atgcggcctg cgcgctcgcc tacggcgggc gcaaggaacg ccactgcgtc
     1801 cacgcgcttt gctttcacgg ccgcctcgac ctcgtcaggc ccgagcatca cgagtgcgac
     1861 gttcgaattc tgaagatcgt agtgcgccag gacgctttcg atcgccgcaa ggtcggcctc
     1921 gtggtgcggc accacgccga gccttttctt ggcaagatcc gtaaagtcgt cgacgtcgcc
     1981 cgactcgggg gcggcgacga ttagcgcctc ctcgcgcagg atgccgatcg tgaggccgtt
     2041 ggtcggcagc agcacgtcgg ggcggacaac cgcgagatgc acgcgcctgt cctgaagcgc
     2101 ctgagcggtc tgcttgaggt catcgaaggg ctgcacggtg aggcggatat cccgtcgctc
     2161 ctcgcgtagc gcctcgcgga acgcgtcgag gagcttcgcc tcgggacctt cgcggggcgc
     2221 cacggccacc acgtactgcg tcggtgccga gatgtaccag tatccgagcg cggcgaggca
     2281 gccgaccacg acgaggccaa ggatggccag aggatagacc cgatcggtcc gccagagcct
     2341 atcgatgaag ctttcgttca cgcgggcact ttcgcctcca gagctgtaga aacccttgag
     2401 gcgctgcatc gttgcgcggc caagcatcgc gcccaaggg
//
LOCUS       DASQWN010000256         5120 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1234455, whole genome shotgun sequence.
ACCESSION   DASQWN010000256 DASQWN010000000
VERSION     DASQWN010000256.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 5120)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5120)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5120
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1234455"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..795)
                     /locus_tag="VE686_04920"
     CDS             complement(<1..795)
                     /locus_tag="VE686_04920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009764693.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PAS domain S-box protein"
                     /protein_id="HYY83828.1"
                     /translation="MNIDESIAGESAEELYESAPCGYLSTLPDGRIVRVNQTFLKWTG
                     YSREKLTAARFVDLLNVPGRIFHETHYAPLLEMQGFAHEIAFDVVCADGTILPVLVNT
                     SQTRDRSGTPTLRRTTVFNATERRRYERELLEARRRAEKAASDLRLLNDTLAERVEAE
                     VAERVKAEEALRQAQKMEAVGQLTGGIAHDFNNLLQGIMGALHMVQKRLAVGRIADVG
                     RFLEGALESASRAATLTARLLAFSRRQPIDPRAVDCNRLIATIEELL"
     gene            complement(792..1613)
                     /locus_tag="VE686_04925"
     CDS             complement(792..1613)
                     /locus_tag="VE686_04925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018116033.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HYY83829.1"
                     /translation="MSVVRQNNVVVSGRGTEPIVFAHGYGCDQNMWRFVAPAFEPDYK
                     VVRFDHVGHGGSDASAFDPRKYASLHGYADDLVKICDELGVRRGVFVGHSVSAMIGVL
                     AAVERPDLFDRLVLIGPSPCYLNDEGYVGGFHRKDIDELLEFLDANHLGWSSTMAPVI
                     MGNADRPELAEELANSFCRTDPEVAKHFARVTFLSDNRHDLPRLATKTLVLQCSNDVI
                     APESVGRYVAAEIEGAELVVLHATGHCPNLSAPGETVSAIKRFLAKSTGLERPAP"
     gene            1864..4173
                     /locus_tag="VE686_04930"
     CDS             1864..4173
                     /locus_tag="VE686_04930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007008441.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043546 - molybdopterin cofactor binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="xanthine dehydrogenase family protein
                     molybdopterin-binding subunit"
                     /protein_id="HYY83830.1"
                     /translation="MTVTKFGIGQPMRRVEDRRLLTGGGNYGDDYAPAGCLHAALLRS
                     PHAHARFHIGDVGAAKAMPGVRLVLTAADVAHLGEIKCQAPLPNDDGTQNHLAHIPLL
                     AKEVAKHLGDAIAFVVADTVAQAKDAVEAIEVDYEVLPAVVGIRDALKAGAPAVWNEA
                     KDNLAYDATMGDKAAVDAAFAAAARTVRVEVENQRVVTNYMETRSVIAEHDGGTESLT
                     LTISSQGVHGLRDTIAGVLGVEKDKLRVVTGDVGGGFGTKTFTYREYPLAAEAARRLG
                     RPVKWVSERAEHFVADAQGRDNLSVGEVALDGEGRFLAMRFDVVGDLGAYLSQFGPYI
                     PYLGATMLTGVYRTPALHVRVRGVYTNTLPVDAYRGAGRPEAAYLLERLVDRAGRETG
                     LGQDEIRRRNFIPASAMPYKTPIGDRTYDTGDFAGHMGRAMEASDWAGFEARLAESRR
                     GGRLRGIGLATYIECTAWGEGEDVKVTLDKDGGATVYVGTQSNGQGHATAYAQFASEQ
                     LDLPLDRIRVVQGDTARVATGNGTGGSRSIPIGGISVDAASKDLAGKLKDLASDELEA
                     GVGDLEIADGAVRVAGTDRTIDFSALAALPRATEAMLTGQGDFVPPAATYPNGTHVAE
                     VEIDPETGITSIVRYTVCDDFGTTVNPLLLAGQVHGGMAQGIGQALHERTVYDAEGQL
                     LTASFMDYAVPRAEDVPFFHFETKNVPSTTNPMGIKGAGEAGSIGSCPAVMNAVVDAL
                     DRGARVRDIDMPATPASIFAALRSTRAAA"
     gene            complement(4219..4569)
                     /locus_tag="VE686_04935"
     CDS             complement(4219..4569)
                     /locus_tag="VE686_04935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012114396.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RidA family protein"
                     /protein_id="HYY83831.1"
                     /translation="MTIQRIKGGPRMSMAVVHGNTVYVAGQVADDPNADVGGQTKQIL
                     GKIDALLAEAGTDKTRILSANIWLRDIGTFAQMNAAWDAWVPQGNTPARATVEAKLAS
                     PNLLVEIAVIAARG"
     gene            4910..>5120
                     /locus_tag="VE686_04940"
     CDS             4910..>5120
                     /locus_tag="VE686_04940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009763753.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF892 family protein"
                     /protein_id="HYY83832.1"
                     /translation="MPAKQKTLDDLFLETLKDMYHAEKQILRALPKMAKAAESDQLRQ
                     AFETHRKETEGQVARLEQVFEMIGKP"
BASE COUNT          858 a         1715 c         1729 g          818 t
ORIGIN      
        1 gagcaactcc tcgatcgttg cgatgagacg attgcaatct actgcacggg gatcgatcgg
       61 ctgccgccga gagaacgcga gcagtcgcgc cgtcaacgtg gcggcgcggc tcgccgactc
      121 cagtgcccct tccaggaagc gcccgacatc cgcaatgcgt ccgaccgcaa gccgcttctg
      181 caccatgtga agcgcaccca tgatgccctg aagaaggttg ttgaagtcgt gcgcgatgcc
      241 gccggtcagc tggccgacag cctccatttt ctgcgcctgc cggagcgcct cctccgcctt
      301 gacccgctcc gctacctcgg cctccacccg ctcagcaagc gtgtcgttga ggagcctcag
      361 atccgaggcg gccttctcgg ccctgcgtcg cgcttccagc agttcgcgct cgtagcgcct
      421 ccgttcggtg gcgttgaaca cggtcgtgcg acgcagcgtc ggcgtcccgg atcgatcgcg
      481 cgtttgagat gtgtttacga ggacggggag gatcgttcca tccgcgcaga ccacatcgaa
      541 ggcgatttcg tgagcgaacc cctgcatctc gagaagcggc gcgtaatgcg tttcgtggaa
      601 gatgcgcccg ggtacgttga gaagatcgac gaaccgagcc gccgtgagct tctcgcggga
      661 gtagcccgtc cacttcagga aggtctgatt cacacggacg atgcgcccgt ccggaagtgt
      721 ggagagatac ccgcagggcg cgctctcgta gagttcctcg gcgctctcgc cggcgatact
      781 ctcgtcgatg ttcaaggggc cgggcgctcc aagccggtcg acttcgccag gaaccgcttg
      841 atggcagaca ccgtctcccc gggggcgctg aggttggggc agtggccggt tgcatgcagg
      901 acgacgagtt cggcaccttc gatctcggcg gcgacatagc ggccgacgga ctcgggcgcg
      961 atcacgtcgt ttgagcattg aaggacgagt gtcttcgtcg cgaggcgcgg caagtcgtgt
     1021 cggttgtccg aaagaaacgt cactcgggcg aagtgtttgg cgacctccgg gtccgtgcgg
     1081 cagaagctat tcgccagctc ttcggccagc tcgggcctat cagcgttccc catgatcacg
     1141 ggcgccatcg tgctcgacca gcctaggtgg tttgcgtcaa ggaactcgag cagctcatcg
     1201 atgtccttgc ggtggaaacc gccgacgtat ccctcatcgt tgaggtaaca gggggatggg
     1261 ccgatcagga ccaggcggtc gaacagatcg ggtcgctcga ccgcggcgag gactccgatc
     1321 atggcactta cggagtggcc gacgaagacg cctctccgga caccgagttc gtcgcaaatt
     1381 ttcaccaggt cgtcggcgta gccgtggagc gatgcgtatt ttcgtggatc gaacgcggat
     1441 gcgtcggagc ctccatgtcc cacgtgatca aagcgaacga ccttgtagtc gggctcaaaa
     1501 gcgggggcca cgaaacgcca catgttctgg tcgcagccgt atccatgagc gaagacgatg
     1561 ggctcggtac cgcgtccgct gactacgaca ttgttctgcc gaacaaccga cattccacct
     1621 ccgccatccc tcggcgccgg tatagggcag atgcctggga tttgcgagca cgagaggcgc
     1681 ggggccggag agaccccgcc ctcgatctcc gtcagccgct gctcggtcaa cgcaaggcgc
     1741 gcaggggcgg acggccgcgc gccgggccct tgcggaacgg ggttgcgggg aagacgcttc
     1801 atgggcagct tgcggtcttg ctctactgcg tcgtcctcag cgccgtcctc cccgaggttt
     1861 cccatgacag tcaccaagtt cggcatcggc cagcccatgc gtcgggtcga ggatcgccgc
     1921 ctgctcaccg gcggcggaaa ctatggcgat gactacgcgc ccgccggctg cctgcacgcc
     1981 gccttgctgc gaagcccgca cgcgcacgcg cgcttccata tcggcgacgt gggcgcggcg
     2041 aaggccatgc ccggcgtgcg tctcgtgctc acggccgccg acgtggcgca tctcggcgag
     2101 atcaaatgcc aggcgccgct gcccaacgac gacgggaccc agaaccacct ggcgcacatt
     2161 ccgctgctcg cgaaggaggt ggccaagcac ctcggcgacg ccatcgcgtt cgtcgtcgcc
     2221 gatacggtgg cgcaggcgaa ggacgccgtc gaggctatcg aggtcgacta cgaggtcctg
     2281 ccggccgtcg tgggcatccg ggacgccctg aaggccggcg cgcccgcggt ctggaatgag
     2341 gccaaggaca acctcgccta cgacgccacc atgggcgaca aggccgccgt cgacgccgct
     2401 tttgccgccg cggcgcggac cgtccgcgtg gaggtcgaga accagcgcgt cgtgacgaac
     2461 tacatggaga cgcgcagcgt gatcgccgag cacgacggcg ggaccgagag cttgacgctc
     2521 accatctcga gccagggcgt gcacggcctg cgcgacacta tcgcgggggt cctcggcgtc
     2581 gagaaggaca agctgcgcgt cgtcaccggc gacgtcggcg gcggcttcgg gacgaaaacg
     2641 ttcacctacc gcgagtaccc gctggccgcc gaagcggcgc gccggctcgg acgtcccgtc
     2701 aagtgggtgt ccgagagggc cgagcacttc gtcgccgacg cgcaggggcg cgataatctc
     2761 tcggttggcg aggtcgcgct cgatggcgag ggccgcttcc tcgccatgcg cttcgacgtg
     2821 gtcggcgacc tcggcgccta cctgtcgcag ttcgggccct acatcccgta tctaggcgcg
     2881 accatgctga ccggcgtcta ccggacaccg gcactgcacg tgcgcgtgcg gggcgtctac
     2941 accaacacgc tgcccgtcga cgcctatcgc ggggcagggc ggcccgaggc cgcctacctg
     3001 ctcgaacgcc tcgttgatcg cgccgggcgc gagacggggc tcggacagga cgagatccgc
     3061 cgacgcaact tcatcccggc gagcgccatg ccctacaaga cgcccattgg cgaccgcacc
     3121 tatgacacgg gcgacttcgc aggccacatg ggccgcgcca tggaagcatc cgactgggcc
     3181 gggttcgaag cccggctcgc cgagtcccgc cgcggcgggc ggctgcgcgg catcggcctt
     3241 gccacctaca tcgagtgcac ggcctggggc gagggggagg acgtcaaggt gaccctcgat
     3301 aaggacggcg gtgcaaccgt ctacgtcggc acgcagtcga atgggcaggg gcacgccacg
     3361 gcctacgcgc aattcgcctc cgagcagctc gatctccccc tcgatcgtat ccgcgtggtg
     3421 cagggcgaca cggcgcgggt cgcgacgggc aacgggaccg gcggctcgcg ctcgatccct
     3481 atcggcggca tctcggtcga cgcagcctcg aaggacctcg ccgggaagct gaaggatctc
     3541 gcctcggatg agctcgaggc cggcgtgggc gacctggaga tcgccgatgg cgccgtgcgg
     3601 gtcgccggca cggaccgcac catcgacttc tcagccctcg ccgccctgcc gcgcgcgacc
     3661 gaggcgatgc tgaccgggca gggcgacttc gtgcccccgg ccgccaccta cccgaacggc
     3721 acgcacgtcg ccgaggtgga gatcgacccg gagacgggca tcaccagcat cgtccgctac
     3781 acggtctgcg acgacttcgg cacgaccgtg aacccgctcc tgcttgccgg ccaagtccac
     3841 ggcggaatgg cgcagggcat cgggcaggcg ctgcacgagc gcacggtcta cgacgccgag
     3901 gggcagcttc tgacggcgag tttcatggac tacgccgtgc cgcgcgccga ggacgtgccg
     3961 ttcttccact tcgagacgaa gaacgtgccc tcgaccacga accccatggg catcaagggc
     4021 gccggcgagg cgggctcgat cggctcctgc ccggcggtca tgaacgccgt cgtcgacgcc
     4081 ctcgaccggg gcgccagggt gcgcgacatc gacatgcccg cgaccccggc gagcatcttc
     4141 gccgccctga gaagcacgcg cgccgcggcg taagccgccg cgcgtcgtcc cttgggttct
     4201 gaaacgcgcg acgggcgatc agccgcgcgc ggcgatgacg gcgatctcga cgagtaggtt
     4261 cggcgaggcg agtttggcct cgacggttgc ccgcgccggg gtgtttccct ggggtaccca
     4321 ggcgtcccag gcggcgttca tctgggcgaa ggtgccgatg tcgcgcagcc agatattggc
     4381 cgagaggatg cgcgtcttgt cggtgcccgc ttcggcgaga agggcgtcga tctttccgag
     4441 gatctgcttc gtctgcccgc cgacgtcggc gttcggatcg tcggccacct ggccggccac
     4501 gtagacggtg ttgccgtgca ccacggccat gctcatgcgc gggccgccct tgatgcgctg
     4561 gatcgtcatt ctttgctctc cccctgtggt gttgcggcga acctatagag actcggcatc
     4621 ggcgctgtcg agacacctgt cattgaaccc gggaccgcgt ttcggcgacg aaacatcggg
     4681 cgacataccg gggaaacagc gggcggctag tgaggccgca ggcgcaacgt ccggcacaag
     4741 ggcgagcacg acaggagacg atcatggcct cgaatttcct ctgcttcatg ctcggcggcg
     4801 tcggcccgct ctgggtcgtt gcctgggcca tctatcatta gcgcgggccg cggaacctca
     4861 cgggcaaggc cgggtttcag tgggcgtaca gcacccagga ggatccccga tgcctgccaa
     4921 acagaagacc ctcgatgacc ttttcctcga gacgctgaag gacatgtacc acgccgagaa
     4981 gcagatcctg cgcgccctgc caaagatggc gaaagcggcg gagtccgatc agctgcgcca
     5041 agccttcgag actcaccgca aggagaccga aggccaggtg gcgcgcctcg agcaggtgtt
     5101 cgagatgatc ggcaagccgg
//
LOCUS       DASQWN010000257         3160 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1134322, whole genome shotgun sequence.
ACCESSION   DASQWN010000257 DASQWN010000000
VERSION     DASQWN010000257.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 3160)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3160)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3160
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1134322"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            178..765
                     /locus_tag="VE686_04945"
     CDS             178..765
                     /locus_tag="VE686_04945"
                     /EC_number="3.1.26.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012556747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0004523 - RNA-DNA hybrid ribonuclease
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease HII"
                     /protein_id="HYY83833.1"
                     /translation="MREYELRSCGHGTIAGLDEVGRGPLAGPVVAAAVVLDLLNVPEG
                     LNDSKLLPIERREALFEEILATAHVGIASMSHVEVDTRNIRQASLTAMCRALAALPCR
                     PDIALVDGNDPPDLPCPVQTVIKGDAQIASIAAASIVAKVVRDRMMRRLGPLFPVYGF
                     HTNVGYSTAGHLAALAKRGPSPFHRRSFAPVRGDA"
     gene            complement(770..1693)
                     /gene="panE"
                     /locus_tag="VE686_04950"
     CDS             complement(770..1693)
                     /gene="panE"
                     /locus_tag="VE686_04950"
                     /EC_number="1.1.1.169"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015933017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008677 - 2-dehydropantoate 2-reductase
                     activity [Evidence IEA];
                     GO_process: GO:0015940 - pantothenate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-dehydropantoate 2-reductase"
                     /protein_id="HYY83834.1"
                     /translation="MRVLVVGAGALGGYFGGRLLAAGRDVTFLVRPRRAAQLAEAGLV
                     VESRFGNLHLEKPPTVLAENLREPFDLVLLSCKAYDLEAAMDSFAGGVGPNTAILPFL
                     NGMAHLDALEARFGAEAVLGGVVLIAATLRDGAVVHLNDVHGIIFGDRTGAMSPRMQA
                     IAEVMTGAGFDARLSDAIIVEMWEKWVFLASLAGGSCLMRAPVGAIVAAPGGRELMLG
                     LIDETFAIAKAAGSEPRPSAMERTRTNLTMPKSGFAASMMRDMEGGGPTEADHILGDL
                     IRRGEAADVPCPLLRLAYTHLKAYEARRATA"
     gene            complement(1714..2733)
                     /locus_tag="VE686_04955"
     CDS             complement(1714..2733)
                     /locus_tag="VE686_04955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007594965.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0008299 - isoprenoid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polyprenyl synthetase family protein"
                     /protein_id="HYY83835.1"
                     /translation="MGVVVPFEDKGPDSRASIESLVTLVARDMERVNTMILSRTGSQV
                     TMIPEVANHLISSGGKRLRPMLTLATAALSGYRGDGHVKLAASVEFMHTATLLHDDVV
                     DESDMRRGREAARVKWGNEASVLVGDFLLGQAFKMMVEVGSLRALDILSSAASVIAEG
                     EVMQLAAAKNTETNEDEYLAVVRGKTAELFAAACEVGPVIASRPKSEAAACRSYGMNL
                     GIAFQLIDDALDYGGTSQKLGKNVGDDFREGKITLPVVLSFRRGSEAERGFWRRTLEQ
                     GEIAEADLAQALAIMRRHRALEDTVERARHYGAMARDALALFPDSGHKQALLDAVDFC
                     IARAH"
     gene            2842..3066
                     /locus_tag="VE686_04960"
     CDS             2842..3066
                     /locus_tag="VE686_04960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019904901.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2007 domain-containing protein"
                     /protein_id="HYY83836.1"
                     /translation="MVELIRTNDLVLIGVIEGLLRASRIPVLVADNHISAIEGSIGAF
                     PRRVLVPHDRAAQARRMMIDAGLAAELRDG"
BASE COUNT          444 a         1108 c         1120 g          488 t
ORIGIN      
        1 ccgggtgagg gcttttacca ggcggatttg ttgtcacgct gcacgctgcg ggcctttccg
       61 atccacagcc ctccacaggc ccggtcgttc ggtcgcgggt gacaggacgg gcgcgccgtc
      121 gtcttgtcgt ctggacggaa ccgattcggg cgcgcgatgc caccttcctt gggcgtgatg
      181 cgggaatatg agctgcggag ctgcggccac ggcaccattg cgggcctcga cgaagtcgga
      241 cgcgggccgc tcgccggtcc cgtcgtcgcg gccgccgtgg tgctcgacct cctcaacgtt
      301 cccgaagggc tgaacgattc gaagcttctg ccgatcgagc ggcgcgaggc gctgttcgag
      361 gagatcctgg ccaccgcgca cgtcggcatc gcctcgatgt cgcacgtcga ggtggacacg
      421 aggaacatcc ggcaggcctc gctgaccgca atgtgccgcg cgctcgccgc cctgccgtgc
      481 cggcccgaca tcgccctggt cgacggcaac gatccgccgg acctgccgtg cccggtgcag
      541 accgtgatca agggcgacgc gcagatcgcg tccatcgcgg cggcatccat cgtcgccaag
      601 gtcgtgcgcg accgcatgat gcgccggctc gggccgctgt tcccggtcta cggtttccac
      661 accaacgtcg gctactcgac ggccggccat ctcgccgcgc tggcgaagcg cgggccgtcg
      721 ccgttccacc gccgcagctt cgcgcccgtc cggggcgacg cctgaggcgt caggccgtcg
      781 cgcggcgcgc ctcgtaggcc ttcaggtggg tataggcgag gcgcaggagc gggcagggga
      841 catcggcggc ctcgccgcgc cggatgaggt cgccgaggat atgatccgcc tccgtgggac
      901 cgccgccttc catgtcgcgc atcatcgacg ccgcgaagcc tgacttgggc atcgtcaggt
      961 tggtccgcgt acgctccatg gcggagggac gaggctcgct tcccgcggct ttggcgatgg
     1021 cgaaagtctc atcgatgagc ccgagcatca gctcccggcc gccgggcgcg gcaacgatcg
     1081 ctccgaccgg cgcgcgcatg aggcagctgc cgccggccag ggaggcgagg aacacccact
     1141 tctcccacat ctcgacgatg atcgcgtcgc tcaggcgcgc gtcgaacccg gctcccgtca
     1201 tgacctcggc gatggcctgc atgcgcggtg acatggcgcc ggtccgatcg ccgaagatga
     1261 tgccgtgcac gtcgttgagg tgcaccaccg caccgtcgcg cagggtggcc gcgatgagga
     1321 ccacgccgcc gagcacggcc tcggcgccga agcgcgcttc gagggcgtcg aggtgcgcca
     1381 tgccgttgag gaagggcagg atggcggtgt tcggacccac gccgccggcg aacgagtcca
     1441 tggccgcctc gaggtcgtag gccttgcagc tcaggagcac gaggtcgaac ggctcgcgca
     1501 ggttctcggc gagcaccgtc gggggcttct cgagatgcag attgccgaac cggctctcga
     1561 ccacgaggcc ggcctcggcc agttgcgccg cccggcgcgg ccggaccagg aaggtgacgt
     1621 cccgccccgc cgcgagcagc cggccgccga aatacccgcc gagcgccccg gcgccgacca
     1681 cgagcacgcg catgtcgatc gtctcctcag gcctcaatgg gctcgtgcga tgcagaaatc
     1741 gacggcgtcg aggagcgcct gcttgtggcc gctgtccggg aacagcgcca gcgcgtcgcg
     1801 cgccatcgcg ccatagtgcc gggcgcgctc gacggtgtcc tcgagggccc ggtggcggcg
     1861 catgatggcc agggcctggg cgaggtcggc ctcggcaatc tcgccctgct cgagcgtgcg
     1921 gcgccagaac ccgcgctcgg cctccgagcc gcggcggaag gacagcacca cggggagcgt
     1981 gatcttgccc tcgcggaaat cgtcgccgac gttctttccg agcttctggc tcgtgccgcc
     2041 gtagtccagg gcgtcgtcga tgagctggaa ggcgatgccg aggttcatgc cgtagctgcg
     2101 gcaggcggca gcctcggact tcgggcgcga ggcgatcacg ggcccgacct cgcaggccgc
     2161 ggcgaagagc tcggccgtct tgccccggac gacggcgagg tactcgtcct cgttggtctc
     2221 ggtgttcttg gccgccgcga gctgcatcac ctccccttcg gcgatcacgg acgctgccga
     2281 cgacaggatg tcgagggcgc gcaggctgcc cacctcgacc atcatcttga aggcctggcc
     2341 gaggaggaag tcgccgacga ggacgctcgc ctcgttgccc cacttcaccc gtgcggcctc
     2401 cctgccgcgg cgcatgtcgc tctcgtcgac gacgtcgtcg tgcaggagcg tcgccgtgtg
     2461 catgaactcg acgctcgccg cgagcttgac gtggccgtcg ccgcggtagc ccgacagggc
     2521 cgccgtcgcc agcgtcagca tggggcgcag gcgcttgccg cccgaggaga tcaggtggtt
     2581 ggcgacctcg gggatcatcg ttacctgcga tcccgtccgc gacaggatca tggtgttgac
     2641 ccgctccatg tcgcgggcga cgagggtgac gagactttcg atgctggccc ggctgtccgg
     2701 tcccttgtcc tcgaacggaa cgacgacgcc cacgctgctc tttccaggct tgcccgccgg
     2761 cggggccggc ttgatgatgg tcaccgtggc acggcggcca gggggccgca acgttcagca
     2821 tgccgcaagg gggcgcgagg cgtggtcgag ctcatccgga cgaatgacct cgtgctcatc
     2881 ggcgtgatcg aggggctgct tcgcgcgtcc cgcatcccgg tgctcgtggc cgacaaccac
     2941 atcagcgcga tcgagggttc gatcggagcg ttcccgcgcc gcgtcctcgt cccgcacgat
     3001 cgggccgcgc aggcccgccg catgatgatc gacgcggggc tcgccgccga actgcgcgat
     3061 ggctgaggcc gaggaggtct ccgatgacac ccttctcgac gggcgcgtgc gcctgaagca
     3121 gctcacgcgc ggccaccggg ccggcacgga tgcggtgctg
//
LOCUS       DASQWN010000258         2125 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_739139, whole genome shotgun sequence.
ACCESSION   DASQWN010000258 DASQWN010000000
VERSION     DASQWN010000258.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2125)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2125)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2125
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_739139"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..909)
                     /locus_tag="VE686_04965"
     CDS             complement(<1..909)
                     /locus_tag="VE686_04965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012454751.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-54 dependent transcriptional regulator"
                     /protein_id="HYY83837.1"
                     /translation="MSGTILLVDDDPVQRRLLEAMVCRFGYDSLVADGGEAALALLRA
                     EADRIDLVILDLMMPQVDGLAVLARMREAGVDTPVIVQTAHGSIEAVVTAMRAGAIDF
                     VVKPVGAERLQVSIKNAIRVDTLEHEIRTLRRRASGTLTFKDLASKSPDMGRVIRLAE
                     RAARSTIPVLIEGESGVGKEVLARAIQGSSERKGRPFVTVNCGAIPENLVESTLFGHE
                     KGAFTGATDRHVGKFVEASGGTLFLDEIGELPLDAQVKLLRAIQEGEVDPVGAKKSVR
                     VDIRLISATNKSLLDLVKEGRFREDLY"
     gene            1075..>2125
                     /locus_tag="VE686_04970"
     CDS             1075..>2125
                     /locus_tag="VE686_04970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015926971.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oligoendopeptidase F"
                     /protein_id="HYY83838.1"
                     /translation="MPNTIDPSREPRACNVAATASAPKAADLGPLPEWDLGDLYPGMD
                     APEFAADLGKAEAECKAFADAYRGKLEGLARARDGGEGLFAAIRRYEAVEDLIGRIMS
                     FAGLVYSGDTTDPKRAKFYGDAQERLTAASSDLLFFGLELNRIDDAVIDAAVARPPLA
                     HYRPWLEDLRKDKPHQLDDKLEQLFHEKSVTGRAAWNRLFDETIASLRFTVRGEELAI
                     EPTLNKLQDSDETLRKDAAEALAKTFRANLRTFTLITNTLSKDKEISDRWRGFQDVAD
                     SRHLANRVEREVVEALVSAVQEAYPRLSHRYYALKARWFGKDALEYWDRNAPLPKVEQ
                     RTIGWDEARDTVLGAY"
BASE COUNT          341 a          752 c          710 g          322 t
ORIGIN      
        1 gtacaggtcc tctcggaagc gcccctcctt cacgaggtcg agcaggctct tgttggtcgc
       61 cgagatgagg cggatgtcga cgcggacgct cttcttcgcc ccgaccggat cgacctcgcc
      121 ctcctggatg gcgcgcagga gcttgacctg cgcgtcgagg ggcagctcgc cgatctcgtc
      181 gaggaacagg gtgccgcccg aggcctcgac gaacttgccg acgtgccggt cggtggcgcc
      241 cgtgaaggca cccttctcgt ggccgaagag cgtcgactcg acgaggtttt cgggaatggc
      301 gccgcagttc acggtgacga acgggcggcc cttgcgctcg ctcgagccct ggatcgccct
      361 ggccagaacc tccttgccga cgcccgactc gccctcgatg agcaccggga tggtcgagcg
      421 ggcggcccgc tccgcgagcc ggatcacgcg gcccatgtcg gggctcttgg acgcgaggtc
      481 cttgaacgtc agcgttcccg aggcgcgccg gcgcagggtg cggatctcgt gctcgagagt
      541 atcgaccctg atggcgttct tgatcgaaac ctgcaggcgc tcggcgccga cgggcttcac
      601 cacgaaatcg atggcgccgg cccgcatggc cgtcacgacc gcctcgatgg agccgtgcgc
      661 ggtctggacg atcacgggcg tatcgacgcc ggcttcgcgc atgcgggcga gcaccgcgag
      721 gccgtcgacc tgcggcatca tgaggtcgag gatcacgagg tcgatgcggt cggcctcggc
      781 gcgcaacagc gcgagcgcgg cctcgccgcc gtcggcgacc aggctgtcgt agccgaaccg
      841 gcataccatc gcctcgagca ggcgcctttg aaccgggtcg tcatcgacca ggaggatcgt
      901 gccgctcatg cgaaaaacgc tgcctttgcg ggagagtgtc ccgtttcgga gcgatgctgg
      961 cggacaacgg taaagcggct gttaatgcgc ccggtccgca cgggccgggt tgatcgaagg
     1021 gcctcgttcg ccgatatgcc ttgtgccttc cgcaaaacca tcgcctaaag caacatgccg
     1081 aacaccatcg atccgtcgcg cgagccgcgc gcctgcaacg tcgccgcgac cgcctccgcg
     1141 ccgaaggccg ccgacctcgg gcccttgccc gagtgggacc tcggcgatct ctaccccggc
     1201 atggacgccc cggagttcgc ggccgacctc ggcaaggccg aggcggagtg caaggccttc
     1261 gcggacgcct accgcggcaa gctcgagggc ctcgcccgcg cccgcgatgg cggcgaaggc
     1321 ctgttcgccg ccatccggcg ctacgaggcg gtcgaggatc tcatcgggcg catcatgtcg
     1381 ttcgcgggcc tcgtctattc gggcgacacc accgatccga aacgggcgaa gttctatggc
     1441 gacgcgcagg agcggctgac ggccgcctcg agcgacctcc tgttcttcgg cctcgagctc
     1501 aaccgcatcg acgacgccgt gatcgacgcc gcggtcgccc ggccgccgct cgcgcactat
     1561 cgcccgtggc tcgaggacct gcgcaaggac aagccgcacc agctcgacga caagctcgag
     1621 cagctcttcc acgagaagtc ggtgacgggc cgcgccgcct ggaaccgcct cttcgacgag
     1681 accatcgcgt cgctgcgctt caccgtgcgc ggcgaggaac tcgccatcga gccgaccctc
     1741 aacaagctcc aggactccga cgagaccctg cgcaaggacg cggccgaggc acttgccaag
     1801 accttccgcg ccaacctgcg caccttcacg ctgatcacca acaccttgtc gaaggacaag
     1861 gagatctccg accgctggcg cggcttccag gacgtggcgg attcgcgcca cctcgccaac
     1921 cgggtcgagc gcgaggtcgt cgaggcgctg gtctcggccg tgcaggaggc ctatccgcgc
     1981 ctgtcgcacc gctactacgc gctcaaggcg cgctggttcg gtaaggacgc cctcgagtac
     2041 tgggaccgca acgcgcccct gccgaaggtc gagcagcgca cgatcggctg ggatgaggcg
     2101 cgcgacacgg tgcttggcgc ctacg
//
LOCUS       DASQWN010000259         2826 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1234866, whole genome shotgun sequence.
ACCESSION   DASQWN010000259 DASQWN010000000
VERSION     DASQWN010000259.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2826)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2826)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2826
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1234866"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..277)
                     /locus_tag="VE686_04975"
     CDS             complement(<1..277)
                     /locus_tag="VE686_04975"
                     /EC_number="2.3.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019401195.1"
                     /note="Conjugates Arg from its aminoacyl-tRNA to the
                     N-termini of proteins containing an N-terminal aspartate
                     or glutamate; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginyltransferase"
                     /protein_id="HYY83839.1"
                     /translation="MTSQPRDAPQFYLTAPSSCPYLPGKEERKVFTHIVGKRARELNE
                     ILTQGGFRRSQTIAYRPACESCRACVSVRVVVDDFRPSGNMRRVLKAN"
     gene            complement(384..872)
                     /locus_tag="VE686_04980"
     CDS             complement(384..872)
                     /locus_tag="VE686_04980"
                     /inference="COORDINATES: protein motif:HMM:NF018028.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RDD family protein"
                     /protein_id="HYY83840.1"
                     /translation="MAQGPYSTGPYGNPGYAGPAVDPLWTEGAIGRRFFAYLIDLVMI
                     AIFTVVLWFVIGLVGIVTFGLGWVLYAILPLSAVIYSAITVGGSAQSTIGMRIFGLRV
                     VDAATGGRVGMLVAAVHALLFYLAAGTFVLLCIDVLVGMARADRRMGHDLLAGVTLVR
                     SS"
     gene            complement(884..2128)
                     /locus_tag="VE686_04985"
     CDS             complement(884..2128)
                     /locus_tag="VE686_04985"
                     /EC_number="4.3.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019401193.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine ammonia-lyase"
                     /protein_id="HYY83841.1"
                     /translation="MSDAFAITLADVERAARTIAGKVLRTPLMPAPRLSELTGGDVVV
                     KHENMQPTGSFKERGALNKLSALSDDERRRGVIAMSAGNHAQAVAYHAARLGVPATIV
                     MPVTTPLVKVENTRSHGARVVLEGETLADSGEHALGLADRESLVLVHPYDDPAVMAGQ
                     GTVALEMLAEAPDIEMLVVPIGGGGLISGIAVATKAVKPDIEVIGVEAALYPSFMNAI
                     RGEDAPIGGPTLAEGIAVKTVGRLTLPIVRDLVSDILLVDEVHIERAVAAYATLQRTM
                     AEGAGAAGLAAMLSRPGLFKGRRVGLVLCGGNIDARLLASVMVRELEREDRIACFRMT
                     TSDRPGLLGSLASRLGDLGANILEVSHGRLFLDVPAKGVTIDVTIETRDAAHTLEVFE
                     ALKRDGLAPRRLNAGGLSEAAY"
     gene            complement(2142..>2826)
                     /locus_tag="VE686_04990"
     CDS             complement(2142..>2826)
                     /locus_tag="VE686_04990"
                     /inference="COORDINATES: protein motif:HMM:NF014684.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_component: GO:0043190 - ATP-binding cassette (ABC)
                     transporter complex [Evidence IEA];
                     GO_function: GO:0015658 - branched-chain amino acid
                     transmembrane transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="branched-chain amino acid ABC transporter
                     permease"
                     /protein_id="HYY83842.1"
                     /translation="GALYSAVAGHFAVARIASRSAQPSLIATVGLSLFLMEYLRLAQS
                     PVTVWIPPVWSDTLPLLRAGSFVVGVTPVSLVTSGVAAAAAAALLTTMHRSGFGRAWR
                     AYADDPKAAALSGVDGRRLLGGTLALAGAMAGLAGTLVVIQYGGLGFAGGFQLGLKAL
                     IAAVFGGIGSVAGALVGGIAIGAFETLWSAYFPIEMRDVALYASLIAVLAFRPGGLLG
                     SRDPGPREV"
BASE COUNT          493 a          987 c          973 g          373 t
ORIGIN      
        1 ggttcgcttt caacacgcgg cgcatgttcc cggacggccg aaagtcatcg acgacaacac
       61 gcaccgacac gcaggcgcgg cagctctcgc aggcagggcg gtaggcgatc gtctgcgagc
      121 gccggaagcc gccctgcgtc aggatctcat tgagctcgcg ggcgcgcttg ccgacgatgt
      181 gggtgaacac tttccgctcc tccttgcccg gcaggtacgg acaggaggag ggagctgtga
      241 ggtagaactg cggggcgtcg cgcggctggc tcgtcacgct ggctgaagcc ttgatgggga
      301 ctggtgcaga ttgcccgtcc cgatgcggaa cgatagcacc gctcaggacg ccgacaagcg
      361 gcggcggccc ggcgattgcg tggttatgag gaccggacca gcgtcacgcc ggcgaggagg
      421 tcgtggccca tgcgccggtc cgcccgcgcc atccccacga gcacatcgat gcacaggagc
      481 acgaaagtgc cggcggcgag atagaacaac aacgcgtgca cggcggcgac gagcatgccg
      541 actcggccgc ccgtcgcggc gtcgacgacg cgcaaaccga aaatccgcat gccgatcgtg
      601 ctctgcgccg atccgccgac cgtgattgcg ctgtagatca cggcggacaa aggcaaaatc
      661 gcatagagca cccagccgag gccgaaggtg acgatcccca caagaccgat gacaaaccac
      721 aacaccaccg tgaagatggc gatcatcacg agatcgatca gataggcgaa gaaccgccgg
      781 ccgatcgctc cctcagtcca gagcgggtcc accgccggcc cggcgtagcc agggttcccg
      841 tacgggcccg tggagtaggg tccctgcgcc atcgaagctc tcctcagtac gcggcctcgg
      901 acaggccgcc ggcgttcagg cgccgcggcg caagcccgtc gcgcttcaag gcctcgaaca
      961 cctccaatgt atgtgctgcg tcgcgagttt cgatggtcac gtcgatggtg acccccttgg
     1021 cgggcacgtc caagaagagc cggccgtgcg agacctccag gatgttggcg ccgaggtccc
     1081 ccaggcggct cgcgaggctg cccagcagtc ccggccggtc gctcgtggtc atccggaagc
     1141 aggcaatgcg gtcctcccgc tcgagctccc ggaccatcac cgaggcaaga agccgcgcgt
     1201 cgatgttgcc gccgcacagg acgagaccga cgcggcggcc cttgaacagc cccgggcggg
     1261 agagcatggc ggccagcccc gccgcgccgg cgccctccgc catggtgcgc tggagcgtcg
     1321 cgtacgcggc gaccgcgcgc tcgatatgga cctcgtcgac aaggaggatg tcggagacga
     1381 ggtcgcgcac gatcggcagc gtcaggcggc cgacggtctt cacggcgatg ccctcggcaa
     1441 gcgtcggccc cccgatcggg gcgtcctcgc cgcggatcgc gttcatgaac gacggataaa
     1501 gcgccgcctc gacgccgatc acctcgatgt cgggcttcac ggccttggtg gcgaccgcta
     1561 tccctgagat gagcccgccg ccgccgatcg gcaccaccag catctcgatg tcaggcgcct
     1621 cggccagcat ctccagggcg accgtgccct ggccggccat gacggcggga tcgtcataag
     1681 ggtggacgag gaccagactc tcgcggtccg cgagcccgag ggcgtgctcg cccgagtcgg
     1741 cgagggtctc gccctcgagc accacacgag cgccgtgcga gcgggtgttc tccactttca
     1801 ccagcggcgt cgtcaccggc atgacgatgg tggctgggac ccctaagcgc gccgcgtgat
     1861 aagcgaccgc ctgcgcgtga ttgccggccg acatggcgat gacgccgcgg cggcgctcgt
     1921 cgtccgacag cgcagacagc ttgttcaggg cgccgcgctc cttgaaggaa cctgtcggct
     1981 gcatgttttc gtgcttcacg acgacgtcgc cgccggtgag ctccgacagc cgcggtgccg
     2041 gcatcagcgg ggtgcgcagc accttgccgg cgatcgtcct ggccgcccgc tcgacgtcgg
     2101 cgagggtgat ggcgaaggcg tcggacattg ggcatccttc ctcacacctc gcgcgggcct
     2161 ggatcgcggc tgccgaggag cccgcccggc cggaacgcca ggacggcgat cagggaggca
     2221 tagagcgcca cgtcgcgcat ttcgatggga aagtacgcgg accagagcgt ctcgaacgct
     2281 ccaatcgcga tcccgccgac aagcgcccct gcgaccgagc cgatgccgcc gaaaaccgcc
     2341 gcgataagcg ccttgagccc gagctggaac ccgcccgcaa acccgaggcc gccatactgg
     2401 atgacaacga gggttccggc gagccccgcc atggccccgg ccagcgccag cgttcccccg
     2461 aggagccgcc gcccgtcgac gccggacagc gccgccgctt tagggtcgtc cgcataggcg
     2521 cgccaggcgc ggccgaagcc ggagcgatgc atcgtcgtga ggagcgccgc cgcggcggcg
     2581 gccgcgacgc cgctcgtgac cagcgaaacc ggcgttacgc cgaccacgaa gctcccggcg
     2641 cgcaggagag gcagcgtgtc ggaccagacc ggcgggatcc agacggtgac agggctctgc
     2701 gcgaggcgga gatactccat caggaacagc gagagcccga cggtggcgat gaggctcggc
     2761 tgcgcgctgc gcgacgcgat ccgcgccacg gcaaagtgtc cggcgaccgc gctgtacaag
     2821 gccccg
//
LOCUS       DASQWN010000260         2035 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_739287, whole genome shotgun sequence.
ACCESSION   DASQWN010000260 DASQWN010000000
VERSION     DASQWN010000260.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2035)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2035)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2035
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_739287"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..302
                     /locus_tag="VE686_04995"
     CDS             <1..302
                     /locus_tag="VE686_04995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012386192.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="penicillin-binding protein activator"
                     /protein_id="HYY83843.1"
                     /translation="VGFETFAGRYRARFGSDPTRLATLSYDAVSLAAALVRTQGTQRF
                     SESALTNPSGFAGADGAFRFRSDGTNDRALAVYEIRNGAAAPLSPAPRNLGGAPT"
     gene            complement(310..1473)
                     /gene="hemW"
                     /locus_tag="VE686_05000"
     CDS             complement(310..1473)
                     /gene="hemW"
                     /locus_tag="VE686_05000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009763606.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051989 - coproporphyrinogen dehydrogenase
                     activity [Evidence IEA];
                     GO_process: GO:0006779 - porphyrin-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM family heme chaperone HemW"
                     /protein_id="HYY83844.1"
                     /translation="MIDHPTRDAGFGVYVHWPFCASKCPYCDFNSHVRREAPDEERFV
                     AAFRREIAHAAALAPGRTVGSVFFGGGTPSLMRPETVGAILDAIGAAWPVELGAEVTL
                     EANPTSVEAGRFRGYRAAGVNRVSLGVQALNDPDLRRLGRMHTAEEALAAVKIAAGIF
                     ERYSFDLIYARPDQAPAAWGAELREAIGHAAEHLSLYQLTIEPGTWFERLRAAGHLAV
                     PSPDEGRALWDVTQETCEAAGLPAYEISNHARPGAESRHNLVYWRYGEYAGVGPGAHG
                     RLVTPRGRLATATEKQPEAWLALVEEAGHGTVTEELLSSEAEGDEFLVMGLRLKEGID
                     PRRYTAFTGRALDERRIRDLEGDGLIARLSGERLLVTREGFPVLDAVVADLAA"
     gene            1587..1841
                     /locus_tag="VE686_05005"
     CDS             1587..1841
                     /locus_tag="VE686_05005"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY83845.1"
                     /translation="MDLFDFGMLLIVVGGVVAIWLVYRKPKTVTHGGLTYRRRRDGSF
                     SDDAGRAVTDPALTSALAAEYAKVMKERDERLRSASSGDD"
     gene            1869..>2035
                     /locus_tag="VE686_05010"
     CDS             1869..>2035
                     /locus_tag="VE686_05010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003598952.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TetR family transcriptional regulator"
                     /protein_id="HYY83846.1"
                     /translation="MRHWNGSGERRGYHHGNLKEALVEAARRFIAERGLGGFTLVDAA
                     RLVGVTPAALYR"
BASE COUNT          288 a          730 c          726 g          291 t
ORIGIN      
        1 ccgtggggtt cgagactttc gcgggccgct accgcgcccg cttcggctcc gacccgacgc
       61 ggctcgcgac cctgtcgtac gacgcggtct cgctcgccgc cgccctcgtg cgcacgcaag
      121 gaacgcagcg cttctcagaa tccgccctga caaacccgtc gggctttgcc ggcgccgacg
      181 gcgccttccg cttccgctcg gatgggacca acgaccgggc gcttgccgtc tacgagatcc
      241 gcaacggcgc cgccgcgccc ttgagcccgg ccccgcgcaa cctcggcggc gccccgacct
      301 gaggcgccct caggcggcga ggtcggcgac gacggcgtcg aggaccggaa agccctcgcg
      361 cgtgacgagc aggcgttcgc cggagaggcg ggcgatgagg ccgtcgccct cgaggtcgcg
      421 gatgcggcgc tcgtcgaggg cgcggcccgt gaacgccgtg tagcgccgcg gatcgatgcc
      481 ttccttgagg cggagcccca tcaccaggaa ctcgtcaccc tcggcctccg acgacaggag
      541 ctcttccgtg acggtgccgt ggcccgcctc ctccacgagc gcgagccagg cttccggctg
      601 cttctcggtc gccgtggcga ggcggcccct cggggtaacg aggcgcccat gcgcgcccgg
      661 tccgacgccg gcgtattcgc cgtagcgcca gtagacgagg ttgtggcgcg attcggcccc
      721 gggccgggcg tgattcgaga tctcataggc cgggaggccc gccgcctcgc aggtctcctg
      781 ggtcacgtcc cacagtgcgc ggccctcgtc ggggctcggc acggcgaggt ggccggcagc
      841 gcgcagtcgc tcgaaccacg tacctggctc gatggtgagc tgatacagcg acaggtgctc
      901 ggccgcgtga ccgatcgcct cccgcaactc cgctccccat gcggcaggcg cctggtccgg
      961 gcgtgcatag atgagatcga acgaatagcg ctcgaagatg ccggccgcga tcttgacggc
     1021 cgcgagcgcc tcctcggcgg tgtgcatgcg cccgaggcgc cgcaggtcgg gatcgttgag
     1081 ggcctggacg ccgagcgaga cgcggttgac gccagcggcg cggtagcccc ggaagcgtcc
     1141 cgcctcgacg ctcgtcggat tggcctcgag ggttacctcg gcgccgagtt cgacgggcca
     1201 ggcggcccca atcgcatcga ggatggcgcc caccgtctcc ggccgcatga gggacggcgt
     1261 gcccccgccg aagaacacgc tgccgaccgt gcggccgggc gccagcgcgg cggcgtgcgc
     1321 gatctcacga cggaaggccg cgacgaagcg ttcctcgtcg ggggcttccc gccggacgtg
     1381 gctgttgaaa tcgcagtacg ggcacttcga cgcgcagaaa ggccagtgca cgtagacgcc
     1441 gaatcccgcg tcgcgcgtcg gatggtcgat catggcccag catgtgaccc ggcccgccgt
     1501 cgttggcaag gcggacgcgg ttggcaggcg ccggacgccc ggcttagaag cgcttcgccg
     1561 agcgcgcgcg cgatcaaggt gtgcgcatgg atttgttcga tttcgggatg ctcctcatcg
     1621 tcgtcggcgg cgtcgtggcg atctggctcg tctaccggaa gcccaagacg gtgacccatg
     1681 gcggcctgac ctaccggcgc aggcgcgatg gcagcttcag cgacgacgcc gggcgggcgg
     1741 taaccgaccc ggcgctcacc tcggcgctcg cggcggaata cgccaaggtc atgaaggagc
     1801 gcgacgagcg cctccgttcc gcatcctcgg gcgacgacta gcaacggacc gcgtgctagg
     1861 actttgtcat gcggcactgg aacggatcgg gcgaacgacg gggctaccac cacggcaacc
     1921 tcaaggaggc cctggtcgag gccgcgcgcc gcttcatcgc cgagcgcggg cttggcggct
     1981 tcaccctcgt cgatgccgcg cggctcgtgg gcgtcacgcc ggccgccctc taccg
//
LOCUS       DASQWN010000261         5698 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1433780, whole genome shotgun sequence.
ACCESSION   DASQWN010000261 DASQWN010000000
VERSION     DASQWN010000261.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 5698)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5698)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5698
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1433780"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..177
                     /locus_tag="VE686_05015"
     CDS             <1..177
                     /locus_tag="VE686_05015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009449957.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M20/M25/M40 family metallo-hydrolase"
                     /protein_id="HYY83847.1"
                     /translation="AGHDAAVFANAGIPSGMIFVRNANGSHNPDEAMDIDDFMKGVDL
                     LFGTVAAGLTGRGV"
     gene            complement(248..1285)
                     /locus_tag="VE686_05020"
     CDS             complement(248..1285)
                     /locus_tag="VE686_05020"
                     /inference="COORDINATES: protein motif:HMM:NF020650.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HYY83848.1"
                     /translation="MQTHLRALLRVSAGALAALAAATAPAAAQQTKNVRFALDWAFLS
                     YQAPFTIPVDDGTFTKLGLNVTVDRGVGSADAVAKVAGGAYDLGHADMYTVARFNAQN
                     PDRKLIGVMLTHDKSAVAVTVLKKSGIAAPAQLAGKKLAAPPGDSSRQVFPLLAAANN
                     LDPAKVSWIDVTADLRETLLVRGEADGISGQITTVVPNLQALGMKNDDYTVMAYADHG
                     VDLYGHVVITRPDFAEKNPEVVRSYLTGLAHGFRVMLNDPKAAVASIKKRDAFLKDDL
                     ELSRLQLANETTFFTPNVMQNGLSSPDKAKLGRSLELVGQVFGFKAPAVEEIYTDKYL
                     PPREALQMKKN"
     gene            1637..2431
                     /locus_tag="VE686_05025"
     CDS             1637..2431
                     /locus_tag="VE686_05025"
                     /EC_number="7.6.2.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006728619.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HYY83849.1"
                     /translation="MADFVRLDDVSLRYGGEDEGTLALDRATLGVAQGEFLAVVGPSG
                     CGKSTLMKAISGLWPVTSGRVTVGGEEVRGPLSCVGMAFQNPTPLPWRTTLANVMLPL
                     EIVQPHRSRLRRDRAAYEARARDLLALVGLKGFEDRHPWQLSGGMQQRASICRALVHE
                     PSLLMLDEPFGALDAFTREELWDALQELWLARRPTVILVTHDIREAVYLADRVLVMSA
                     RPGRVVAECPVPLARPRTLDSTFEPAFGALVHELREHISTARAEAA"
     gene            2494..3252
                     /locus_tag="VE686_05030"
     CDS             2494..3252
                     /locus_tag="VE686_05030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009465427.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HYY83850.1"
                     /translation="MPWAVIVVFFALWELCVHVFGIPRFLLPPPSSVFATLWEFRWPI
                     AVNSWQTLMTTVIGFAFAVVFGLAGGVAIGSSRLLYTGLYPLLIGFNSVPKVAVVPVL
                     VIWFGIGTVPAIISAFLISFFPILVNVATGIATVEPELRDVLRALGAKNRDIILKVGL
                     PRSMPYFFASLKIAITVAFVGSIIAETVAANAGIGHMMIAASSRFDVPLVFAGLLVTA
                     FMGIAMYVVASLIEERMTGWATRSMDPNLSAPPG"
     gene            3290..5683
                     /locus_tag="VE686_05035"
     CDS             3290..5683
                     /locus_tag="VE686_05035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012329592.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043546 - molybdopterin cofactor binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="xanthine dehydrogenase family protein
                     molybdopterin-binding subunit"
                     /protein_id="HYY83851.1"
                     /translation="MSTDSMPDPSPRPLGRAMPRAATRRLVAGRGRYVDDVTIKGELH
                     AAFLRSPFAHASFVITDTAEAAATDGVVAVFTATDMERVCTGWKTVSRNFPGLVSPEQ
                     RPLAVGRAVFQGEPVAMVVAASRAVAEDALEHIAVDWQEHAAVADLETALAPDAPKAH
                     LELPSNLAWHTEIVTGDVDDVFARAALVVEEKFVFARKTGVTLEPRGVLASYDPSTKA
                     LLVHISHQMPHQLQLHLAEFLALSPVDVRVVCTDVGGAFGLKMHVYPDEIATCAASKL
                     LGRPVKFIADRIEALASDIHAREHIVAARMAVDEDGRILGFDVADRQGLGAYSVFPRS
                     STVEAMSGLRAVGAPYVFESYRAQLDSVLQNKSMTGQYRSVGHPIGCTVTEGLVELAA
                     EARGEDPVAFRRRNLLTDEAQPWTNPVGGRMFELSHHRCLDKMVALVDLPRLRAEIDV
                     MRAEGRVVGVGFASFVEFTASNPEVYGKAGVPVAAADTVVLSLEPSGEVKAQASASEL
                     GQGIQQGLAQVVAEALGVDPEQVRMSTGDTATMPHGGGAWASRGAAITGEAAWGAGRK
                     LREEVLGAAAALLQTTPERLDIVRGEIVDRDTRMPRIPSREIAETAALRAYEFPAGVQ
                     PQFSVTNYYRREKDAFIPTNGIQASLVEIDAGTGIVRPLKHWVVEDCGRVINPLLVDE
                     QIRGGVVLGIGEALLEACRYDETGQFTSASLADYLVTMASEAPDVIIGHVETPYSGSV
                     IGAKGAGEAGACASSSAVLNAVNDALRPFGGRVNELPISPVAVLRAMGKLASQSAVA"
BASE COUNT          821 a         1974 c         1941 g          962 t
ORIGIN      
        1 gccggccatg acgcggcggt cttcgccaac gcggggatcc cgtcgggcat gatcttcgtg
       61 cgcaacgcca acggctcgca caatccggac gaggccatgg acatcgacga cttcatgaag
      121 ggagtcgatc tgctcttcgg aaccgtcgcg gccggcctga cgggccgcgg cgtctaacgg
      181 tcgcgcgtaa tgaaaaagcc cggagcggtg ctccgggctt ttctgtgccg ggctcgcgcg
      241 ctcgacgtca gttcttcttc atctgcagcg cttcgcgcgg cgggagatac ttgtcggtgt
      301 agatctcctc gacggcgggg gccttgaagc cgaaaacctg cccgacgagc tcgaggctcc
      361 gcccgagctt cgccttgtcc ggggagctca ggccattctg catgacgttc ggcgtgaaga
      421 aggtggtctc gttggcgagt tgcaggcgcg acagctcgag gtcgtctttg aggaaggcgt
      481 cgcgcttctt gatcgacgcg accgcagcct tggggtcgtt cagcatcacc cgaaagccat
      541 gggcgagacc ggtcaggtag ctccgcacca cctcggggtt cttctccgcg aaatccggcc
      601 gggtgatcac cacgtgcccg tagaggtcga cgccatgatc ggcataggcc atcacggtgt
      661 agtcgtcgtt cttcatgccg agcgcctgca ggttcggcac cacggtcgtg atctggccgc
      721 tgatcccatc ggcctcgccg cgcacaagca gggtctcgcg cagatccgcg gtgacgtcga
      781 tccagctcac cttggcggga tcgaggttgt tggccgcggc gaggagggga aacacttggc
      841 ggctcgagtc gcccggaggc gcggcgagct tcttgccggc gagctgcgcc ggggccgcga
      901 tgccgctctt cttcagcacc gtgactgcga cggccgactt gtcgtgcgtg agcatgacgc
      961 cgatcagctt gcgatcgggg ttctgggcat tgaagcgcgc cacggtgtac atgtcggcgt
     1021 ggccgagatc gtaggcgccg cccgccactt tcgcgacggc gtcggccgag ccgacgccgc
     1081 ggtcgaccgt gacgttcagc ccgagcttgg tgaaggtgcc gtcgtcgacc ggaatggtga
     1141 acggcgcctg atagctcagg aaggcccagt cgagtgcgaa gcgcacgttc tttgtctgct
     1201 gcgcggcagc cggtgccgtc gcggccgcga gggccgcgag cgcgcctgcg gaaacgcgga
     1261 gcagggcacg aagatgagtt tgcatgagac ctccaggaag gacgggcggc ggcggctggc
     1321 cgcccggaag aggcgcgcac taaagcccgt tttgtggacc aaggcgagtg ctcagtttct
     1381 gagaccggcg cccgtttcag gccgggccac ccctccgacg acgggcgcgg acgccctacc
     1441 cgcgacgcca cccgatgccc gcggattgcc tgactgagga gggcggagac gcagcccgtc
     1501 aacgccgcca gcagatgcga cgtttcggcc tggatgcccg cgcgagcagg cgtccaaaat
     1561 tgtagactgt cacgcttgca tgtgcgagct tgggccagcg cttgccccaa gggacgcggc
     1621 gggcgcggga gggatgatgg ccgacttcgt tcgtcttgac gatgtctcgc tgcggtatgg
     1681 cggtgaggac gagggtacgc tcgccctcga ccgtgcgacg cttggtgtcg cgcagggcga
     1741 gttcctggcc gtcgtcggac cttccggttg cggcaagtcg acgttgatga aggccatctc
     1801 gggcctgtgg ccggtgacga gcggacgcgt gacggtcggt ggggaggagg tgcgcggtcc
     1861 cttgagctgc gtcggcatgg ccttccagaa cccgaccccg cttccctggc gcacgacgct
     1921 cgcgaacgtc atgcttcccc tcgagatcgt gcagccccac cggtcgcggc tgcgccgcga
     1981 tcgtgccgcc tacgaggcgc gcgcccgcga cctcctcgcg ctcgtgggcc tgaagggctt
     2041 cgaggatcgc catccctggc agctctcggg cggcatgcag cagcgcgctt ccatctgccg
     2101 ggctctcgtg cacgagccgt cgctcctgat gctcgacgag cccttcggag ccctcgacgc
     2161 cttcacgcgc gaggagctgt gggacgcgct gcaggagctt tggctcgcgc ggcgcccgac
     2221 cgtgatcctc gtcacccacg acatccgcga ggcggtttac ctcgccgacc gcgtgctggt
     2281 catgagcgcg cgacccggcc gggtcgtggc cgagtgccca gtccctctgg cgcgtccgcg
     2341 caccctcgac tcgaccttcg agccggcttt cggcgccctg gtgcacgagc tgcgcgagca
     2401 catcagcacg gcccgggcgg aagcggcatg agcgggcgcg ggacgatgac gcgcaggcgg
     2461 gcgtggctgc gcagccggac ggtcgagcgg ctcatgcctt gggccgtcat cgtggtcttt
     2521 ttcgcgctct gggaactttg cgtccacgtt ttcggcatcc cgcgcttcct cctgccacca
     2581 ccgagcagcg tcttcgcgac cctgtgggag ttccggtggc cgattgcggt gaactcctgg
     2641 cagacgctca tgaccaccgt aatcggcttt gccttcgccg tcgtgttcgg gcttgcgggc
     2701 ggcgttgcca tcggctcgtc gcgactgctc tataccggcc tgtacccgct gctgatcggg
     2761 ttcaactcgg tgcccaaagt cgcggtcgtg ccggtgctgg tgatctggtt cggcatcggc
     2821 accgtgccgg cgatcatcag cgcgttcctg atctccttct tcccgatcct cgtgaacgtc
     2881 gcgaccggca tcgcgaccgt cgaacccgag ctgcgcgacg tgctccgggc gctcggcgcg
     2941 aagaaccgcg acatcatcct caaggtcggg ctcccgcgct cgatgccgta cttcttcgcg
     3001 tccctgaaga tcgccatcac ggtggcgttc gtcgggtcca tcatcgccga gacggtggcg
     3061 gcaaacgcgg gcatcggcca catgatgatc gcggcgtcgt cgcgcttcga cgttcccctc
     3121 gtcttcgccg gcctgctcgt caccgccttc atgggcatcg ccatgtacgt ggtcgcgagc
     3181 ctcatcgagg aacggatgac cgggtgggcg acccgcagca tggacccgaa cctcagcgcg
     3241 ccgcccggct gacccaaacc tgccgcttct tggacgtgac ccgcagccga tgagcaccga
     3301 cagcatgccc gacccgtctc cccgcccgct cggccgcgcc atgccgcgag ctgcgacgcg
     3361 ccggctggtc gcgggccgcg gccgttacgt cgacgacgtc accatcaagg gcgagctcca
     3421 cgcggctttc ctgcgcagcc cctttgcgca cgcgagcttc gtgatcaccg acaccgcgga
     3481 ggccgccgcg acggacggtg tcgtcgccgt gttcacggcg acggacatgg agcgcgtctg
     3541 cacgggctgg aaaaccgtgt cgcgcaattt tcccgggctt gtctctcccg agcagcggcc
     3601 cctcgcggtg ggccgcgccg tgttccaggg cgagcccgtc gctatggtgg tcgcggcctc
     3661 gcgcgccgtc gccgaggatg cgctcgaaca catcgccgtc gactggcagg agcacgccgc
     3721 cgtcgccgac ctcgagacgg ccctcgcgcc ggacgcgccg aaagcccacc ttgagctgcc
     3781 ctcgaacctc gcttggcata ccgagatcgt gaccggcgac gtggacgacg tgttcgcgcg
     3841 cgcggccctc gtggtcgagg agaagttcgt cttcgcgcgc aagaccgggg tgaccctcga
     3901 accccggggc gtgctcgcca gctacgaccc gtcgaccaag gcgctcctgg tccacatctc
     3961 gcaccagatg ccacaccagc tgcagctgca tctcgccgag ttcctcgcgc tctctcccgt
     4021 ggacgtgcgc gtcgtctgca ccgacgtcgg cggagccttc ggcctcaaga tgcacgtcta
     4081 tcccgacgag atcgccactt gcgcagcctc gaagctgctc ggacgaccgg tgaagttcat
     4141 cgccgaccgc atcgaagccc ttgcgtcgga catccatgca cgcgagcaca tcgtcgccgc
     4201 ccgcatggcc gtcgacgagg acggacgcat cctcggcttc gacgtggccg accggcaggg
     4261 gctcggcgct tattcggtgt tcccgcgctc cagcaccgtc gaggcgatga gcggcttgcg
     4321 cgccgtcggc gctccatacg ttttcgagag ctaccgggca cagctcgact ccgtgctcca
     4381 gaacaagagc atgacgggcc aataccgctc ggtcggccat cccatcggct gcaccgtcac
     4441 ggagggtctc gtcgagcttg ccgcggaggc gcgcggggag gacccggtcg cgttccgccg
     4501 ccgcaacctc ctgaccgacg aggcgcagcc ctggacgaac ccggtcggcg gccggatgtt
     4561 cgagctgtcc catcaccgct gcctcgacaa gatggtggcc ctcgtcgacc tgccgcgcct
     4621 gcgcgccgag atcgacgtca tgcgcgcgga gggccgagtc gtcggggtcg gcttcgcgag
     4681 cttcgtcgag ttcaccgcgt cgaaccctga ggtctacggc aaggctggcg tgccggtcgc
     4741 cgcggccgac accgtcgtgc tttccctcga gccctcgggc gaggtgaagg cgcaggcttc
     4801 cgcaagcgag ctcgggcaag ggattcagca gggtcttgcc caggtcgtcg ccgaggcgct
     4861 cggggttgac cccgagcagg tgcgcatgtc gacgggcgac accgcgacaa tgccgcatgg
     4921 aggcggcgcc tgggcctcgc gcggcgcggc catcacgggc gaggcagcct ggggcgcggg
     4981 gcgcaagctc cgcgaggagg ttcttggcgc ggcggcggcc ctgctgcaga ccacgcccga
     5041 gcggctcgac atcgtgcgcg gcgagatcgt cgatcgtgat actcgcatgc cgcgcatacc
     5101 gtcgcgcgag atcgccgaga ccgcggcgct gcgcgcttac gagttccccg ccggcgtcca
     5161 gccgcagttc tccgttacga actactaccg gcgcgagaag gacgccttca tcccgacgaa
     5221 cggcatccag gcgtccctcg tcgagattga tgcagggacc ggcatcgtcc ggccgctcaa
     5281 gcattgggtc gtcgaggact gcgggcgggt catcaacccg ctcctcgtcg acgagcagat
     5341 ccgaggcggc gtcgtgctcg gcatcggcga ggcgctgctc gaagcctgcc gctacgacga
     5401 aaccgggcag ttcacgagcg ccagccttgc cgactacctc gtcaccatgg cgagcgaggc
     5461 gcccgacgtc atcatcggcc acgtggagac gccgtactcg ggctcggtga tcggcgccaa
     5521 gggcgccggg gaggcgggag cctgcgcctc ctcgtcggcg gtgctcaacg ccgtcaacga
     5581 cgccctccgt ccgttcggcg gtcgcgtgaa cgagctgccg atctcgcccg tcgctgtgct
     5641 ccgggccatg ggcaagcttg cttcccagag tgccgtcgca tgaagcccgc ccgatttc
//
LOCUS       DASQWN010000262         2243 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_915858, whole genome shotgun sequence.
ACCESSION   DASQWN010000262 DASQWN010000000
VERSION     DASQWN010000262.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2243)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2243)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2243
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_915858"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..921
                     /locus_tag="VE686_05040"
     CDS             <1..921
                     /locus_tag="VE686_05040"
                     /inference="COORDINATES: protein motif:HMM:NF024945.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HYY83852.1"
                     /translation="RQGRTLDSLQSAYRVGARVAWRRVAEAARRSDLDPETISLLAES
                     IFAYIEELSADSVEGYSEARSRLEGERRRRRRELVTLLVRDPPAAETDLRAASEAAGW
                     RVPRTAAALACDEGRLERLAGRLPTDAVTAAIDGVGCAIIPDPDGPGRRAETDVAVER
                     AKLRAVLGPTGSPSTLAASWSLARATLRAVEAGAIEASALVRVEDALTDLLLFENGAL
                     VGRLAARRLAALDALTPKARRRMEETALAYVQQQGNAAAMARALGLHAQTARYRLSRL
                     RELLGDALDDPDGRFELELALRARASEGST"
     gene            complement(918..2222)
                     /locus_tag="VE686_05045"
     CDS             complement(918..2222)
                     /locus_tag="VE686_05045"
                     /inference="COORDINATES: protein motif:HMM:TIGR02608.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="delta-60 repeat domain-containing protein"
                     /protein_id="HYY83853.1"
                     /translation="MWRAPAVISALVASLALAPAAAGSPGDLDGSFSGDGWLRTLEVR
                     SASNNYLPRVAEDVAVQPDGRIVAVGELIDGTSNWYFGAFRYLPNGELDPSFGEGGWV
                     DTDFGSFEFPHAVAVQPDGGIVVAGEGDCQYAMCFVLARYRPDGSLDPGFGEGGIVRS
                     PFGLVQASHAFDVSLAPDGRIVAAGFVQKGGDAQDSSHFAVARYLPDGRLDPSFSRDG
                     RATVDFGYGNDIAYAVAHQRGGRIVVAGEGARNHNRTEEDFAFARFRRDGRLDRSFSG
                     DGRRTLNFGGRRFDVAYGLAVRGRSIIATGSTVVAPERAPSVALTRLTWSGGLATGFG
                     RRRVRPGPGGGIGRAVLAAPNGRILVGGRAYSDTSQDASDWALLRYTRGGRLDRGFGG
                     DGIVVTDFGTGEDSVRALALDRGRILAAGSIYSSQGLARYLP"
BASE COUNT          317 a          832 c          799 g          295 t
ORIGIN      
        1 cggcagggac ggacgctgga ctcgctgcag tcggcctatc gcgtgggcgc gcgggtggcg
       61 tggcgacggg ttgccgaggc ggcgcgtcgc tcggacctcg acccggagac gatcagcctg
      121 ctggccgagt cgatcttcgc ctacatcgag gagctctcag ctgactcggt cgagggctac
      181 tcggaggctc gctcgcggct cgagggagag cgtcgtcgcc gccggcgcga gctcgtgacg
      241 ctgctcgtcc gcgacccacc cgcagcagag acggacctgc gggcggcatc cgaggcggcg
      301 ggctggcgcg ttccccggac ggccgcggcg ctcgcttgcg acgagggtcg cctggagcgt
      361 ctggccggtc ggctgcccac cgacgcggtc acagccgcta tcgacggcgt cggctgcgcg
      421 atcatcccgg acccggacgg ccccggccgg cgcgccgaaa cggacgtcgc cgtcgagcgg
      481 gccaagctgc gtgcggtgct tggcccgacg ggttcgccca gcacgctcgc cgcctcctgg
      541 tcgctcgctc gcgcgacgct gcgggccgtc gaagccggag cgatcgaggc atcggccctg
      601 gtccgtgtgg aggatgcgct caccgacctg ctcctgttcg agaacggcgc actcgtcggg
      661 cggctggccg cgcgccggct cgcggccctc gatgcgctca ctcctaaggc gcgccgaagg
      721 atggaggaga ccgcgctcgc ctacgtccag cagcagggca acgccgcggc catggcacgc
      781 gccctcggcc tgcacgccca gacggcccgt taccgcctca gccgcctgcg cgagctgctc
      841 ggcgacgcgc tcgacgaccc cgacgggcgc ttcgagctcg agcttgcgct gcgcgcgaga
      901 gcttccgaag gatcgaccta gggcaggtag cgggccagtc cctggctcga atagatcgat
      961 ccggccgcca ggattcgccc gcgatcgagg gcgagggccc tgaccgagtc ctcgccggtc
     1021 ccgaagtccg tgacgacgat gccgtctcct ccgaagccgc ggtccagccg gccacctcgc
     1081 gtatagcgga ggagcgccca gtcggacgcg tcctgtgagg tgtcggagta tgcgcgtccg
     1141 ccgacgagga tccgtccgtt cggcgccgcg agcaccgcgc gcccgatgcc accgcccggt
     1201 ccagggcgaa cacgccggcg gccgaacccc gtcgccagcc ctccactcca ggtgaggcgc
     1261 gtcagcgcca cggacggtgc cctctcggga gcgacgaccg tgctccccgt cgcgatgatc
     1321 gagcggcccc tgacggccag cccgtacgcg acgtcgaagc gccgcccccc gaagttcaag
     1381 gtgcgccttc cgtcgcctga gaagctgcga tccaggcggc cgtctcgccg gaagcgtgcg
     1441 aacgcgaagt cctcctcggt gcggttgtgg ttgcgggcgc cctcgccggc cacgacgatc
     1501 ctgccgccgc gctgatgcgc caccgcgtag gcgatgtcgt tgccgtagcc gaagtcgacg
     1561 gtcgcgcggc cgtcgcgcga gaagctcgga tcgagccggc catccgggag gtaacgcgcc
     1621 accgcgaagt gtgagctgtc ctgcgcgtcg ccgcccttct ggacgaatcc cgcagccacg
     1681 atccgtccat caggcgccag ggagacgtcg aacgcgtgcg acgcctgcac cagcccgaac
     1741 ggcgagcgca cgatgccccc ttcgccgaag ccgggatcga ggctgccgtc cggccggtag
     1801 cgggcgagca cgaagcacat cgcgtactgg cagtcgccct ctccggccac cacgatcccg
     1861 ccatcgggct ggacggcgac cgcatgcggg aattcgaagc ttccgaagtc ggtgtcgacc
     1921 cagccgccct caccgaagga cgggtcgagc tcgccgttcg gcaggtagcg gaacgcgccg
     1981 aagtaccagt tcgaggtccc gtcgatcagc tcgccgacgg ccacgatccg cccgtcgggc
     2041 tggaccgcca cgtcctccgc gaccctcggc aggtagttgt tgctcgccga ccggacctcg
     2101 agcgtgcgca accagccgtc gcccgagaac gagccatcga ggtcgccggg cgagcctgcc
     2161 gcggccgggg cgagcgcgag gctggcgacg agagccgaga tgacggccgg ggcgcgccac
     2221 atgctcgcga gctaccccgc tgg
//
LOCUS       DASQWN010000263         6010 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_319679, whole genome shotgun sequence.
ACCESSION   DASQWN010000263 DASQWN010000000
VERSION     DASQWN010000263.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 6010)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6010)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6010
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_319679"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..753
                     /locus_tag="VE686_05050"
     CDS             <1..753
                     /locus_tag="VE686_05050"
                     /EC_number="3.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018041952.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ArgE/DapE family deacylase"
                     /protein_id="HYY83854.1"
                     /translation="GALMTHLRGYRADAVLIPEPEDEKLVRANTGVLWFEVEVRGHPV
                     HVREMGAGANAIDGAYRVIGALRGLEAEWNARKAAHEHFEAEEHPINLNVGKIEGGDW
                     GSSVPAWCKLQCRIAIYPGVSAAEAAREIEQAVTAFSRKDPFLANNPPRVTFNGFFAE
                     GYVLEPGSEAEAVLARAHEAATGKPLESFMTAGYLDARVHALYDRVPALCYGASSQNI
                     HGFDERVSLSSVKRTTAAMALFIAEWCGVEQA"
     gene            808..1674
                     /locus_tag="VE686_05055"
     CDS             808..1674
                     /locus_tag="VE686_05055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019404917.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HYY83855.1"
                     /translation="MSSDGAAAVPGLRIRFWGVRGSVCASGREFVEFGGHTPCVEVRC
                     GERLFIVDAGTGITRLGGLLGADAPRDIDILLSHLHLDHVTGLPFFKPALMPPHTIRT
                     WCGNLGGESAKAALDRLYAPPLFPITLDQLPARFEHHGFKAGATLRFGDISVATHPLN
                     HPNGATGYRFEHGGRSVCYISDIEHTQLWPPPDLVTFVRNADVVIYDGMFTEAEYPAC
                     KGWGHSTWEKGVELCRAADAKALAIVHLSPKHDDTSLRAQELAIQRSMPTAFVARESQ
                     ELTLPARAAMRA"
     gene            1696..2718
                     /locus_tag="VE686_05060"
     CDS             1696..2718
                     /locus_tag="VE686_05060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010686254.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 4 protein"
                     /protein_id="HYY83856.1"
                     /translation="MPLLILVLPVAAALLTVGLVRALMPLLQRYALARPNARSSHRVP
                     TPQGGGIAVLGAALPLAAVGALLIGVPDAAALKELAVVAVAAITLAVLGAWDDVRPLS
                     ATVRLAVQTLSVAAVVLAAGPESRVLSELVPPWLEFVLLVVAGVWFVNLVNFMDGLDW
                     MTVAEFVPALAFFAVLALVAGDVPPRFALAAALLGALMGFAVFNKPVARLFLGDVGAL
                     PIGLLVGWLTLKLASAGALAAAILLVLYPVADATLTLCRRLARGEKVWQAHRTHFYQR
                     ATDNGFSVLEVSASVFCLNVVLAALAFATLVLPPLGQAAAVALGALLVAVLLWRFARS
                     PAGSPP"
     gene            2715..3647
                     /locus_tag="VE686_05065"
     CDS             2715..3647
                     /locus_tag="VE686_05065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009490760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent epimerase/dehydratase family
                     protein"
                     /protein_id="HYY83857.1"
                     /translation="MTGPLIALTGATGFIGRHLLRELPRRGYRVQVLLRRPSELPEGA
                     TGAIIGDLAAPQNMAAALRGVDAVVHSAGLAHAMSGHPEDDYRVLNTEATVGLARAAD
                     RAGVKRFVFLSSIRAQSGPVSDRVLTEDLPAQPTDPYGRSKLAAEEGLATLSIDWVAL
                     RPVLVYGPGVKGNMAALLRLAQAPVPLPLGGLSARRSLLSVDNLAAAVDTVLNAPGRL
                     RRPLIVADEQALTVAEMIAALRAGLGRGPALIRVPASLIGWAARAAGREEAFERLAGA
                     LVASPAALLSLGWRPPVATPEGLQALARSSASAR"
     gene            complement(3568..5547)
                     /locus_tag="VE686_05070"
     CDS             complement(3568..5547)
                     /locus_tag="VE686_05070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009490759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HYY83858.1"
                     /translation="MTRQSFKKALIIVHDIVATVLAVLLTFLVRFEGQPLDERLQLLP
                     LFLPLFAAYGALVYWFFALYESKWRFASLPDLYNIFRASTVLALTLLVVDYILVSPQL
                     YGFFFFGKIAIALYWLLQMFLLGGPRLAYRYLKFSRSRSTVEREATTPTLLIGRGTEV
                     EVVLRAIESGTVKKLQPRGILSHRAQDHGQSIRGVPVLGGFGDLERVVRDLHERGITV
                     RRLVATPSALAPDAHPEILMTHARRLGLPLARVTSLGEGMRDAELAPIEIEDLLLRET
                     VQIDRGRLERFMRGKRVLVTGGGGSIGSEICTRAVAFGASDLLVVESSEPALHHILEN
                     PALAASETRVDGVIADVRDRPRMFDVVRAFSPDVVFHAAALKHVPYLEKDWAEGLKTN
                     VFGSVNAADAAVDARAGTFVMISTDKAIEPVSMLGVTKRFAEMYTQARDAELDSVEGS
                     TRLIAVRFGNVLGSVGSVVPKFKAQIARGGPVTVTHPEMVRYFMTTREAADLVLTAAS
                     HADHEGRLASAGSNGAERASVFVLKMGQPVRIYELAERMIRLAGFEPGEEIEIAVTGA
                     RPGERLNEILFAREEPRAEIGIDGVMAAQPVSADMSHIEGWLRAFERALATNDRAAVE
                     RVFEEAIPEFSGRKQSFAPAPVSPQASQPAAAIRG"
     gene            complement(5602..>6010)
                     /locus_tag="VE686_05075"
     CDS             complement(5602..>6010)
                     /locus_tag="VE686_05075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009490758.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HYY83859.1"
                     /translation="VGMEAFAARDATSLSGGERARVLLARALATEAPILLADEPLAAL
                     DPRWQLLALERLRARAHTGTSVVMVMHDLSLAARFADVVVLLDRGRVVADGAPRETLD
                     AARLAEVFGIEARVAERDGLVTIEPVRAIAAPP"
BASE COUNT          871 a         2102 c         2085 g          952 t
ORIGIN      
        1 ggcgccctga tgacccacct gcggggctat cgtgccgacg cggtgctgat cccggagccc
       61 gaggacgaga agctcgtacg cgccaacacg ggcgttctct ggttcgaagt cgaggtccgc
      121 ggccatccgg tccacgtgcg cgagatgggt gccggggcga atgccatcga tggcgcctac
      181 cgggttatcg gggccttgcg aggtctcgaa gcggagtgga acgcccgcaa ggcggcgcat
      241 gagcacttcg aggccgagga gcacccgatc aacctcaacg tcggcaagat cgagggcggc
      301 gactgggggt catcggtccc ggcctggtgc aagcttcagt gccgcatcgc gatctacccg
      361 ggcgtgagcg cggcagaggc ggcgcgtgag atcgagcagg cggtgaccgc cttctcgcgc
      421 aaggacccgt ttctggccaa caacccgccc cgcgtcacct tcaatgggtt cttcgccgag
      481 ggctacgtgc tcgagcccgg gtcggaagcg gaagcggtgc tggcgcgggc gcacgaggcg
      541 gcgaccggca agccattgga gagcttcatg acggccggct acctcgatgc ccgcgtgcac
      601 gccctctacg accgggttcc ggcactctgc tatggcgcct caagccagaa catccacggc
      661 ttcgacgagc gtgtcagcct ctcgtccgtg aagcgcacca ctgccgcgat ggcgctcttc
      721 atcgccgagt ggtgcggggt ggagcaggcg taggggcggt gtgcgctagc gcacatcttt
      781 tttacgattg aacgtcacga tctgttgatg tcgagtgacg gggcagcagc ggtgcccggc
      841 ctccggatac ggttctgggg ggtgcgcggc tccgtgtgcg catccggccg cgagttcgtg
      901 gagttcggcg ggcacacgcc ctgcgtcgag gtccgctgcg gcgaacggct cttcatcgtg
      961 gacgcgggga ccgggatcac gaggctcggc ggcttgctcg gggccgatgc cccgcgggac
     1021 atcgacatcc tgctcagcca tctccacctc gaccacgtga cggggctgcc gttcttcaag
     1081 ccggctctga tgccgccgca cacgatccgg acttggtgcg gcaaccttgg cggcgagagc
     1141 gccaaggcgg ccctcgaccg gctctacgcg ccgcctctgt tcccgatcac cctcgaccag
     1201 ctgccggcgc gcttcgagca ccatggcttc aaggccggcg ccaccttgcg cttcggcgac
     1261 atctccgtcg ccacgcaccc cctcaaccat cccaacggcg cgacaggcta ccgtttcgag
     1321 cacggcggcc ggtctgtctg ctacatcagc gatatcgagc acacgcagct ctggccgccg
     1381 ccggacctcg tgaccttcgt ccgcaacgcc gacgtcgtca tatacgacgg catgttcacg
     1441 gaagccgagt atccggcctg caagggctgg ggccattcga cctgggagaa gggcgtggag
     1501 ctctgccgcg ccgccgacgc gaaggccctc gccatcgtcc acctctcgcc caagcatgac
     1561 gatacctccc tgcgtgcgca ggagctcgcg atccagcgct cgatgccgac cgccttcgtg
     1621 gcccgcgagt cgcaagagct gacgctgccc gcccgggccg cgatgcgcgc ctgagctcgg
     1681 gcgcgaacgc cacggatgcc gcttctgatc ctggtccttc ctgtcgccgc tgcattgctg
     1741 accgtcgggc tcgtgcgggc gctgatgccg cttctccagc gctatgcgct cgcacgtccg
     1801 aacgcgcgct cgagccatcg cgtaccgacc ccgcagggcg gcggcatcgc cgtgctcggc
     1861 gccgcattgc cgctggccgc cgttggcgcg cttctcattg gcgtgccgga cgcggcagcg
     1921 ctgaaggaac tcgctgtcgt ggctgtcgcg gcgatcaccc ttgcggtgct gggcgcgtgg
     1981 gacgacgtgc ggccgctctc ggcgacggtg cggcttgctg tccagacgct ttcggtcgcg
     2041 gccgtggtgc ttgcagccgg accagaaagc cgcgtgctct ccgagcttgt gccgccgtgg
     2101 ctcgagttcg tgctcctggt ggtcgccggg gtgtggttcg tcaacctcgt caacttcatg
     2161 gatgggctcg actggatgac ggtcgccgag ttcgtgccgg cgctcgcgtt cttcgccgta
     2221 ctggcgctcg tggccggaga cgtcccgccg cggttcgcac tcgccgccgc gctgcttggc
     2281 gcgctgatgg gctttgccgt gttcaacaag cccgtcgctc ggctgtttct cggcgacgtc
     2341 ggcgcgctgc ccatcgggct gctcgtcggc tggctcacgc tgaagcttgc gagcgctggc
     2401 gcgctcgcgg ccgcgatcct cctggtcctt taccccgtcg cggacgcgac cctcaccctt
     2461 tgccgtcgcc tcgccagggg cgagaaagtg tggcaggcgc accggaccca cttctaccag
     2521 cgagccaccg acaatggctt ctcggtcctt gaggtcagcg cttccgtgtt ctgcctgaac
     2581 gtagtccttg cggcccttgc cttcgcgacg ctcgtgctgc cgcctttggg ccaggccgcc
     2641 gcggtcgcgc ttggcgcgct ccttgtcgcg gtcctgctgt ggcgctttgc gcgttcgccg
     2701 gcgggaagcc caccgtgacc ggcccgctca tcgcgcttac cggggcaaca ggatttatcg
     2761 gacggcatct cctgcgcgag ctgccccggc gaggctaccg cgtccaggtg ctcctgcggc
     2821 gcccgagcga gcttccagaa ggcgcgacgg gcgcgatcat cggggatctt gcggccccgc
     2881 agaacatggc ggcggccctg cgcggcgtcg acgccgtggt ccattccgcc gggctcgcgc
     2941 acgccatgtc gggtcacccg gaggacgact accgggtgct caataccgaa gcgacggtcg
     3001 gtcttgcgcg cgcggcggac cgcgccgggg tgaagcgctt cgtcttcctg tcatcgatcc
     3061 gcgcgcagtc ggggccggtc tcggataggg tgctcaccga agacctcccc gcgcagccga
     3121 cggatcctta tggccgctcg aagctcgccg cagaggaagg cctcgcgacg ctttcgatcg
     3181 actgggtggc gctgcgcccc gtgctcgtct acggccccgg cgtgaagggc aacatggcgg
     3241 cgctcctgcg gctcgcgcaa gcgcccgtgc cgcttcccct tggcggcctc tctgcacgac
     3301 gctcgctcct gtccgtcgat aatctcgcgg cggccgtcga cactgtgctc aacgcgcccg
     3361 gccggttgcg gcgtccgttg atcgtcgccg acgagcaggc gctcacggtg gccgagatga
     3421 tcgccgcgct gcgggccggc ctcggccgtg gtccggccct catccgggta ccggcgagcc
     3481 tgatcggctg ggcggcgcgg gctgcgggcc gcgaggaagc gttcgagcgt ctcgccggcg
     3541 ccttggtcgc gagcccggcg gcgctcctca gcctcggatg gcggccgccg gttgcgacgc
     3601 ctgagggctt acaggcgctg gcgcgaagct ctgcttccgc ccgctgaact ccgggatcgc
     3661 ctcctcaaac acccgctcga cggccgcgcg atcgttcgtc gccagcgccc gctcgaaggc
     3721 gcgcagccag ccctcgatgt ggctcatgtc ggccgacacg ggctgcgccg ccatgacgcc
     3781 gtcgatgccg atctcggccc gcggttcctc gcgcgcgaac aggatttcgt tgaggcgctc
     3841 gcccggacga gcgcccgtga cggcgatctc gatctcctcg cccggctcga agccggcgag
     3901 acggatcatg cgttccgcaa gctcgtagat gcgaacgggc tggcccatct tgagtacgaa
     3961 caccgacgcg cgctcggccc cattcgagcc ggcggacgcg agccggccct cgtggtcggc
     4021 gtgcgaggcg gccgtgagga cgaggtccgc cgcctcgcgc gtcgtcatga agtagcgcac
     4081 catctcggga tgggtgaccg tgacggggcc gccgcgggcg atctgggcct tgaacttcgg
     4141 caccaccgag ccgacggagc cgagcacgtt gccgaaccgc acggcgatga ggcgggtgct
     4201 gccctccacg ctgtcgagtt cggcgtcacg cgcctgcgtg tacatctcgg cgaaacgctt
     4261 cgtgacccca agcatcgaca ccggctcgat cgccttgtcg gtcgagatca tcacgaaggt
     4321 gccggcgcgt gcgtcaacgg ccgcgtcggc cgcgttgacc gacccgaaca catttgtctt
     4381 gaggccctcg gcccaatcct tctcaagata gggcacgtgc ttcagcgcgg cggcgtggaa
     4441 caccacgtcg ggcgagaagg cgcgcacgac atcgaacatg cgcggccggt cgcgcacgtc
     4501 ggcgatgacg ccgtcgaccc gtgtctcgct cgcggcgagc gccgggttct ccaggatgtg
     4561 gtgcagcgca ggctcggagc tctcgacgac cagaagatcg ctggcgccga aggcgaccgc
     4621 acgcgtgcag atctcggagc cgatagagcc gcccccgccc gtcacaagga cacgcttgcc
     4681 gcgcatgaag cgctcgaggc gcccgcgatc gatctgcacc gtctcacgca ggagcaggtc
     4741 ctcgatctcg atgggcgcga gctcggcgtc gcgcatgccc tcgccgaggc tcgtcacccg
     4801 cgcgagcggc agcccaagcc gccgcgcgtg cgtcatcaga atctcgggat gggcatcggg
     4861 tgcaagggcg ctcggagtgg ccacgagccg gcggaccgtg atgccgcgct cgtgcaggtc
     4921 ccggacgacg cgctcgaggt cgccaaaccc gccaagcacc ggcacgcccc ggatggattg
     4981 gccgtggtcc tgcgcccggt gggagaggat gccgcgcggc tgcagcttct tcaccgtccc
     5041 ggactcgatg gcgcgcagga ccacctcgac ctcggtgccg cggccgatga gcagcgtcgg
     5101 cgtcgtcgcc tcccgttcga cggtcgagcg cgagcgcgag aacttgagat agcggtacgc
     5161 tagccgcggg ccgccgagca ggaacatctg caagagccag tagagcgcga tcgcgatctt
     5221 gccgaagaag aagaagccgt agagctgcgg cgagaccagg atgtagtcga cgacgagcag
     5281 ggtcagcgcc agcacggtcg acgcccgaaa gatgttgtag aggtcgggca gcgacgcgaa
     5341 gcgccacttc gactcgtaca gcgcaaagaa ccagtagacg agggcgccgt aagcggcgaa
     5401 cagcggcagg aacagcggca gaagctgcag gcgctcgtcg agaggttgtc cttcgaaccg
     5461 caccaggaac gtgaggagaa cggccagcac cgtcgccacg atatcgtgga cgatgatcag
     5521 ggccttcttg aacgactggc gggtcatggg aagggcgggg tatccgccgc gtccgaggcg
     5581 ttgtcaacgc ggcgcccagg ctcacggcgg ggcggcaatc gcccgcaccg gctcgattgt
     5641 caccaggccg tcacgctccg ccacgcgcgc ctcgatgccg aacacctcgg caaggcgggc
     5701 ggcgtcgagc gtctcccgcg gcgccccatc ggccacgacc cggcctcggt cgagcagcac
     5761 gacgacatcg gcaaagcggg cggcgagaga gaggtcgtgc atgaccatga cgacgcttgt
     5821 accggtgtgg gcgcgcgcgc gcaggcgctc gagggcaagg agctgccagc gcgggtcgag
     5881 cgccgctaag ggctcgtcgg cgaggaggat gggcgcctcg gtcgcgagtg cccgcgcaag
     5941 gagcacccgc gccctctcgc cgcccgacaa cgaggtcgca tcgcgcgccg cgaacgcctc
     6001 catgccgacg
//
LOCUS       DASQWN010000264         2488 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1037487, whole genome shotgun sequence.
ACCESSION   DASQWN010000264 DASQWN010000000
VERSION     DASQWN010000264.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2488)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2488)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2488
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1037487"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..857
                     /locus_tag="VE686_05080"
     CDS             <1..857
                     /locus_tag="VE686_05080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015934104.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA];
                     GO_process: GO:0015074 - DNA integration [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HYY83860.1"
                     /translation="PEAVSPLRKRMIEDMTIRQFGQKTRRDYIRQVRAFTAFLGRSPD
                     QAEPEDLRRYQLHLASLGASYARMNLASTALRFFFHVTLGRPGFGDRLARIAAPERLP
                     VVLSPDEVALLLAHAPNLKYRAALSIAYGCGLRVSEIANLKVTGIDSARMLIRVEQGK
                     GRKDRFAMLSPDLLDLLRQWWRVKRPRGWLFPGQQPAQPITTRQLNRACHAAAEDAKL
                     DKRVSMHTLRHSFATHLLERKTDIRVIQVLLGHRKLDTTAVYTRVALKAIREVTSPLA
                     LLAPPPPP"
     gene            872..2083
                     /locus_tag="VE686_05085"
     CDS             872..2083
                     /locus_tag="VE686_05085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015934105.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IS91 family transposase"
                     /protein_id="HYY83861.1"
                     /translation="MARPHLEVADVLNQHGDAYVARHRGHLSRGQLKVISAIRACRTA
                     ALGGHVARCESCDHLAIAYNSCRNRHCPKCQGHAAQAWLEERQADLLPVSYYHVVFTL
                     PAPVATVAFQNKAVVYDLLFRTAADTLLTIAADPKHLGARIGLTAVLHTWGSALTHHP
                     HVHVVVPGGGLAPDGSRWIACRPGFFLPVRVLSRLFRRLFLDRLAKAHRVGKLAFHGD
                     LAHLADPAAFAAHLAPLRRSEWVVYAKRPFAGPEAVLAYLARYTHRVAIANSRLLALD
                     KRGVTFRWKDYRAREGARGREWIKTMTLPADEFIRRFLLHVLPDGFHRIRHYGLFASG
                     TRAATIARIRALLAPRPGPYQADPEPARSDERSAPACPCCGGRLIIVERFRRGESPKT
                     RPTVAVRIDTS"
BASE COUNT          373 a          997 c          741 g          377 t
ORIGIN      
        1 gcccagaagc cgtctctccg ctgcggaagc ggatgatcga ggacatgacc attcgccaat
       61 tcggccagaa gaccaggcgc gactacatcc gccaggttcg cgcgttcacc gcctttctcg
      121 gccgctcacc ggaccaggcc gagccggagg acttgcggcg ctaccagctc cacctggcct
      181 cgctcggcgc gagctacgcc cgcatgaacc tggccagcac ggcgctgcgg ttcttcttcc
      241 acgtcacgct cggtcgacca gggttcggcg accgcctggc ccggatcgcc gcgcccgagc
      301 ggctgccggt tgtcctcagc cccgacgagg tcgcgctcct gctcgcgcac gcgccgaacc
      361 tgaagtaccg cgccgcgctc agcatcgcct atggctgcgg cctgcgcgtc tccgagatcg
      421 ccaacctcaa ggtcacgggc atcgacagcg cccgcatgct gatccgggtc gagcagggca
      481 aggggcgcaa ggaccgcttc gcgatgctct cgcccgacct cctcgacctc ttgcggcagt
      541 ggtggcgggt gaagcgcccg cgcggctggt tgttccccgg ccagcagcct gcccagccga
      601 tcaccacgcg tcagctcaac cgggcctgcc atgcggccgc ggaagacgca aagctcgaca
      661 agcgcgtgtc catgcacacg ctccgacaca gcttcgcgac gcatctcctg gagaggaaga
      721 ccgatatccg ggtcatccag gtgctgctcg gccatcggaa gctcgacacc acggcggtct
      781 atacccgcgt cgccctgaag gcgatccgcg aggtgacgag cccgctcgcg ctgctagcgc
      841 ccccgccacc gccgtaaaag ccgcgcccgt cgtggcgcgg cctcacctgg aggtcgcgga
      901 tgtcctgaac cagcatggcg atgcttacgt ggcgcgccat cgcgggcacc tgagccgcgg
      961 ccagctcaag gtcatctcgg cgatccgagc ctgccggacg gcggcgctcg gcggccatgt
     1021 cgcgcgctgc gagagctgcg accacctcgc catcgcctac aactcctgcc gcaaccggca
     1081 ttgcccgaag tgccagggtc atgccgcgca ggcctggctc gaagagcggc aggccgacct
     1141 gctgcccgtg tcctactacc acgtggtttt caccctgccg gcgcctgtcg cgacggtggc
     1201 attccagaac aaggccgtag tctacgatct gctgttccgc accgctgccg acacgctcct
     1261 cacgatcgcg gccgacccga agcatctcgg cgcccggatc gggctcacag ccgtgctcca
     1321 cacctggggc tctgcgctca cccaccatcc tcacgtgcac gtcgtcgtgc cgggcggcgg
     1381 cctcgccccg gacggctcgc gctggatcgc ctgccgaccc ggcttcttcc ttcccgtacg
     1441 agttctctcg cgcctgttcc gcaggctctt cctcgaccgg ctcgccaagg cccaccgcgt
     1501 cggcaagctc gccttccatg gcgacctcgc gcatctcgcc gatcctgccg ccttcgcggc
     1561 ccatctcgca ccgctgcgac gatcggagtg ggtcgtctac gccaagcgcc cctttgccgg
     1621 accggaggcc gtgctcgcct acctggcccg ctacacccac cgggtcgcga tcgcgaacag
     1681 ccggctcctc gccctcgaca agcgcggcgt gaccttccgc tggaaggact accgcgccag
     1741 ggaaggcgcg agaggtcgcg agtggatcaa gaccatgacg ctcccggcgg acgagttcat
     1801 ccgccgcttc ctgctccacg tcctgcccga cggcttccat cgcatccgcc actacggcct
     1861 gttcgccagc ggcacccggg ccgccaccat cgcccggatc cgggcactgc tcgcgccgag
     1921 gccgggcccg taccaagccg atcccgagcc ggcccgcagc gacgagcgat cggcgcctgc
     1981 ctgcccctgc tgcggcggcc gcctcatcat cgtcgaacgc ttccggcgag gtgagtctcc
     2041 gaagacgcgc ccaaccgtcg ccgtccggat cgacacgtca tgatcgtcac cccgagcacg
     2101 gccacgatca ccagccgatg cgccgcgggc tcaccgaccc gccttggtcc cgctcgtgcc
     2161 gtcgtgcccg atctaggttc ttccacccga tccggcgcag gtcgtgatca cggtctccac
     2221 gttgcagccc gaccacaggt gaccgtcagc cagcccgaag cgctttcgag ccgcgcgacc
     2281 ggccctcgcc gacctcgcga ccgcctcgcc aaatccccat agcaagcgcg acatcccccg
     2341 cgcctggacg cccccgcggt ttcctcccct ggaggctttc gaacgccggc cctcagcccc
     2401 gtcccaaccg tcgcgccagg gccggcatcc gaaacccttc acaaacccgg ccatcacggg
     2461 ccacttcgtc agctcgcccg aaagctga
//
LOCUS       DASQWN010000265         2425 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_220199, whole genome shotgun sequence.
ACCESSION   DASQWN010000265 DASQWN010000000
VERSION     DASQWN010000265.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2425)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2425)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2425
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_220199"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..148
                     /locus_tag="VE686_05090"
     CDS             <1..148
                     /locus_tag="VE686_05090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015928411.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="molecular chaperone"
                     /protein_id="HYY83862.1"
                     /translation="DGVQVTGAALENGLLHVDLVREIPEAKKPRVIPIAGRGVETIEA
                     KKAA"
     gene            425..>2425
                     /locus_tag="VE686_05095"
     CDS             425..>2425
                     /locus_tag="VE686_05095"
                     /inference="COORDINATES: protein motif:HMM:NF024267.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HYY83863.1"
                     /translation="MTFVLLALGVPALLVLASAEDGLLTFVVLGTLLGLIVAVATLAY
                     NLTAAAAERRELERKVATDTLHGGFAVKFNQADFPNKALILEAAMNHMSQGFAMILPD
                     GKIWAYNRKAVEFSGINEDKFSFPATAREIGLAQLAAGELGPDGSLAPPELRDFFIKG
                     VGRPPATYIRRRPNGTVIEVRSGPMPGGGTVQSYTDVTELMHAKEAAENAAQAKSAFV
                     AMMSHEIRTPLNGIIGMAEMLARSDLSEPQSESVQTLIECSEALLSVVNDVLDFSKLE
                     AGPIEFEQMPMSLHELCRSSLNISCVEGCDLRVEWSVAQDLPEHVMGDSNRLRQVLVN
                     LLSNAIKFTERGSVTVTLRRGSAGRIRAEVVDTGLGIPKAAHGRIFRDFSQVDASISR
                     RFGGTGLGLAICKKLIEGMGGEIGFESEEGRGSCFWLEVPLPEAAVRAESAAQGDAPA
                     LATPLHVLIAEDGRVNRAVAVQALKSLGHTADVAMDGREAVAMARARHYDLILMDMQM
                     PRMDGFAATRAIRALADFADTPIVALTANASASDRAACLASGMTGFLAKPFKATELRR
                     AIHDAMQSVSPAPEVRGTPDLDRRRIAVLIDHVGYDQARDVFECIESETSETMERLLC
                     AAHQNDIAGFRQEIGSLWETLAAAGFSAAAARCQLPAADESLV"
BASE COUNT          408 a          825 c          798 g          394 t
ORIGIN      
        1 cgacggggtc caggtgaccg gcgcggcttt ggagaacggc cttctccacg tcgacctcgt
       61 ccgcgagatc ccggaggcca agaagccccg cgtgatcccg atcgcgggcc gcggcgtcga
      121 gaccatcgag gccaagaagg ccgcgtaagg cgcccgtaaa cgctcgagcg ctccggtgac
      181 caaccggagc gctttttgtt tgcccgcaac ggttgcgaat ttaaggcacg tgctccggcg
      241 gtgccgagtt ttcgcgtctc ctcgacacga aaaattcacc atgcccgtgg acgttctcgg
      301 cgctcttacg atccgctaac gccccacctg caaaaacgcc cgcatgggct tgttctccaa
      361 agacgggact acaatcacga gttggatgga tgcggcgcag accgctgccg cccgcaccgc
      421 cttcttgacg ttcgttctgc tcgcgctcgg agttcctgcc ctgctggtgc tcgcgtccgc
      481 cgaggacggg ctcctcacgt tcgtcgtcct cgggacgctg ctcgggctga tcgttgcggt
      541 cgccaccctg gcctataatc tgacggccgc tgcggccgag cgccgggagc tcgagcgcaa
      601 ggtcgcgacc gacaccctgc acggcggatt cgccgtgaag ttcaatcagg ccgactttcc
      661 caacaaggcg ctcatcctcg aagccgccat gaaccacatg agccaaggct tcgccatgat
      721 cctcccggac gggaagatct gggcctacaa tcgcaaggcc gtcgagttct cggggatcaa
      781 cgaggacaaa ttctcgtttc ccgccaccgc gcgggagatt ggcctcgccc agctcgcggc
      841 cggcgagctc gggcccgacg gcagcctggc gccgcccgaa ctgcgcgact tcttcatcaa
      901 gggcgtcggc cgcccgcccg cgacctacat ccgccggcgg ccgaacggca cggtgatcga
      961 ggttcgcagc ggcccgatgc ccggcggggg cacggtgcaa tcctacaccg acgtgacgga
     1021 gctgatgcac gccaaggagg ccgccgagaa cgcagcccag gcgaaatccg ctttcgtcgc
     1081 aatgatgagc cacgagatcc ggacgcctct caacggcatc atcggaatgg ccgagatgct
     1141 ggctcggagc gacctctccg agccccaatc cgagtcggtg cagacgctca tcgagtgcag
     1201 cgaggcgctg ctcagcgtcg tcaacgacgt gctcgacttc tcgaagctcg aggccggtcc
     1261 gatcgaattc gagcagatgc cgatgagcct gcacgagctc tgtcgctcga gcctgaacat
     1321 cagctgcgtc gagggctgcg atctcagggt cgaatggagc gtcgcgcagg accttcccga
     1381 gcacgtgatg ggggattcga accgtctcag gcaggttctg gtgaacctgc tctcgaacgc
     1441 gatcaagttc accgagcgcg gttccgtcac ggttaccctt cgccgcggct ccgcgggtcg
     1501 catcagggcc gaggtcgtgg acacggggct cggcatcccg aaggcggcgc acggccgcat
     1561 cttccgcgac ttctcgcagg tggatgcctc gatcagccgc cgcttcggcg gcactggtct
     1621 cggcctggcg atctgcaaga agctgatcga gggcatggga ggcgagatcg gcttcgagag
     1681 cgaggaaggt cgcggatcgt gcttctggct cgaggtcccg ctgccggaag cggcggtcag
     1741 ggccgagagc gcggcccagg gcgacgcgcc cgcgctcgcg acgccgctgc acgtcctcat
     1801 cgccgaggac gggcgggtca atcgcgccgt cgctgtgcag gcgctcaagt cgctcggcca
     1861 caccgctgac gtcgcgatgg acgggaggga ggcggtcgcg atggctcggg ctcgtcatta
     1921 cgacctcatc ttgatggaca tgcagatgcc ccgcatggac ggattcgcgg cgacgcgcgc
     1981 gatccgggcc cttgccgact ttgccgacac cccgatcgtg gcgctgacgg cgaacgcctc
     2041 tgcgtccgat cgggcggctt gcctcgcgtc cggcatgacc ggctttttgg cgaagccctt
     2101 caaggccacc gagcttcgaa gggccatcca tgacgccatg cagtcggtca gcccggcgcc
     2161 cgaagtgcgc ggcacacccg acctggaccg ccgacgcatc gccgtgctga tcgaccacgt
     2221 cggctacgat caggccaggg acgtcttcga gtgcatcgag agcgagacct cggaaaccat
     2281 ggagcgactg ctgtgcgcgg cgcaccagaa cgacatcgcc gggttccggc aggagatcgg
     2341 atcgctctgg gagacactgg ccgccgccgg gttctcggcc gccgcggcac ggtgccagct
     2401 gccggcagcc gatgagagcc tcgtc
//
LOCUS       DASQWN010000266         2395 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_815906, whole genome shotgun sequence.
ACCESSION   DASQWN010000266 DASQWN010000000
VERSION     DASQWN010000266.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2395)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2395)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2395
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_815906"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1432)
                     /locus_tag="VE686_05100"
     CDS             complement(<1..1432)
                     /locus_tag="VE686_05100"
                     /inference="COORDINATES: protein motif:HMM:NF012464.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000150 - DNA strand exchange activity
                     [Evidence IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase family protein"
                     /protein_id="HYY83864.1"
                     /translation="MRAALYARVSTERQERFQTIDSQLAALRDWAATGGHEISDDFVF
                     RDEGYSGSRLDRPGLDALRDAVRDGVVGIVAVLTPDRLARKYAYQVLLLEEFRRAGVE
                     IVFLQHPISDDPNDQLLLQIQGAIAEYERAVLGERFRRGKLQKARDGHYQGGCAPYGY
                     RYVPRQEAVPGHLVVDEKEAALVRTLYGWLIDERTTIRQILKRLNAGPDVPRSGRHAW
                     SPSLVHHILADPVYAGTAYANRYTFVPPKKPRRDRGPRSHEASCRRPKPREQWIAIPV
                     PAIVDQETWDRAQAQLARNAALSFRNNTKHNYLLRCLMTCATCGLAMFGRTYAARGKQ
                     PERRYYQCHGKDCILSARPAACPSRNVKAEVIEAAVWDHVAGLLASPERLVAQFDHVA
                     VAAEAGTVRDRAADQQLRARLDRVARADKRLLDAYEAGAVTLAELSERRHHLADERLA
                     LERQQQERDHLRRQRVQAEAVRTSLEA"
     gene            1747..2199
                     /locus_tag="VE686_05105"
                     /pseudo
     CDS             1747..2199
                     /locus_tag="VE686_05105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012226942.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA];
                     GO_process: GO:0006313 - DNA transposition [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
BASE COUNT          380 a          779 c          828 g          408 t
ORIGIN      
        1 acgcctccag gctggtgcga acggcctcgg cctggacgcg ctggcgacgg aggtgatcgc
       61 gctcctgctg ctggcgctcc agggccaggc gctcgtcagc cagatggtgg cgccgctccg
      121 acaactcggc caaggtcacc gcgccggcct cgtaggcgtc caataggcgc ttgtcggccc
      181 gcgccacacg gtccagccgg gcgcgcagct gctggtcggc cgcacggtcc cgcaccgtgc
      241 cggcctctgc cgcaacggcg acatggtcga actgcgccac cagccgctcc gggctggcga
      301 gaaggccggc gacgtggtcc cacaccgcgg cttcgatcac ttcagccttg acgtttcggc
      361 tcgggcaggc tgcgggacgg gcactcagga tgcagtcctt gccgtggcac tggtagtagc
      421 gccgctccgg ctgcttcccc cttgcggcat aggtgcgccc gaacatggcc aagccgcagg
      481 tcgcgcaggt cattaggcag cgtagaagat agttgtgctt ggtgttgttc cggaatgaca
      541 gcgcggcgtt acgcgcgagt tgcgcctgcg ctcggtccca ggtctcctgg tcgacgatcg
      601 ccggcacggg gatggcgatc cactgctcgc gcggcttcgg ccggcggcat gacgcctcgt
      661 ggctccgcgg cccccgatcg cggcgaggct tcttgggcgg cacgaaggtg tagcggttgg
      721 cataggccgt gccggcgtag accgggtccg ccaggatgtg gtgcaccagg gatggcgacc
      781 aggcatggcg gccggagcgc gggacgtcgg gaccggcgtt caggcgcttg aggatctggc
      841 ggatggtcgt ccgctcgtcg atgagccagc cataaagggt gcgcaccaac gcggcctctt
      901 tctcgtccac gacgaggtgg cctggcaccg cctcctggcg cggcacgtag cgataaccgt
      961 aaggcgcaca gccgccctgg tagtggccgt cgcgcgcctt ctgcagcttg ccacggcgga
     1021 agcgctcgcc gagaacggcc cgctcgtatt cggcgatggc gccctggatc tgcaacagga
     1081 gttggtcatt cgggtcgtcc gagatcgggt gctgcaagaa cacgatctca acgcctgcgc
     1141 ggcggaactc ttccaggagc aggacctggt aggcgtattt gcgcgcgagg cgatcggggg
     1201 tcaggacggc gacgattccg acgacaccgt cgcgcacggc gtcccggagc gcgtcgaggc
     1261 cgggccggtc gagccggctg ccgctgtagc cctcgtcgcg gaagacgaag tcgtcgctga
     1321 tctcgtgccc tcccgtagcc gcccagtcgc gcagagcggc gagttggctg tcgatggtct
     1381 ggaagcgctc ctggcgctcg gttgagacac gggcatagag tgcggcgcgc atggcgggct
     1441 cacctcgggt cgaggatggg ggacaggaag cggcgggttg tcgaggagac ggcggtaagc
     1501 ctggtccaac cgctcctggc cgtcgcgggc acgaaccggc atcgagtgga tgatccaggc
     1561 tgcccccgct ccggcgcatg atctgttcgg catggggcaa gacctctgca ggaggctggc
     1621 cccatcgcct gcaccatgtc cgcctcaggg aaagcgcgcg tcccttcgcc ggcgccgcag
     1681 cgtaggctgt gctccagcga acggcatcga cgcggtgaaa cggaccgcgt cgattgcgtt
     1741 cggatcgtgc attggatgcg caatgcgctg gcgcgcgtgc agccgaagca acgtccggcg
     1801 gtcgtggccc tgctcaagac gatcttcgcc caggacacgg ccgaagccgc ccatgcccaa
     1861 tggcgacagg tcgccgacac cttgcgtgaa cgcttcccca agctggctga cctgatggac
     1921 ggctcgcgcg aggacgtgct cgtgtacatg accttcccgc gcgagcactg ggcgcaaatc
     1981 gcctcgacga acccgctgga gcggctcaac cgcgagatca agcgccgcgc cgacgtggtc
     2041 ggcatctttc cgaatgaccc ggccgttatc cggctcgtgg gtgcgctcat gctcgaacag
     2101 aatgacgagt gggccgtcac gcgccgctac atgagcctgg agtcgctcgc taccttgagc
     2161 gatgatcctg tcatcaggtt gtccgccgtg gcagcctgat caccctcgga cccaccgagg
     2221 accggcactc ctacaccacg cctcggggca cgacccgtta tagcctcttt gggtcgtggc
     2281 ttttgcatat gaatagctcc tcataagcgt tgcagaatgt gagcgagacg cactgctcac
     2341 tataggaata ttagcatata gataagtggc tgtccgttgt cagatgattt gagac
//
LOCUS       DASQWN010000267         3022 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_46355, whole genome shotgun sequence.
ACCESSION   DASQWN010000267 DASQWN010000000
VERSION     DASQWN010000267.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 3022)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3022)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3022
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_46355"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            345..1286
                     /gene="cpaB"
                     /locus_tag="VE686_05110"
     CDS             345..1286
                     /gene="cpaB"
                     /locus_tag="VE686_05110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013893821.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Flp pilus assembly protein CpaB"
                     /protein_id="HYY83865.1"
                     /translation="MRSKTIIMIALALLFGAGAIFAAQNWVARQNSERLRTVEVAPKP
                     LPTDTVVVAALPFRFGTEVTKQHLREVAWPAGTAPKGAFSKIDEVLDGKTRRVALAAV
                     VENEPLLRTKVTGPGQRASLSALIAPDMKAVTVRVNDVNGVAGFVLPGERVDILLTRS
                     LDKGQGFADVLLQNVNVLAVDQLADDHADKPALVKAVTLEVNTAQAQKLSLATNVGSL
                     SLVLRAAGAATVETPQRVAVTDLSQFDEAPPQVAAATVPAPPAPAPPPVTAAAPVATR
                     IVAVGVTRGMKRDEYSVPRQGTVDVGDIATGSTTPRR"
     gene            1296..2786
                     /locus_tag="VE686_05115"
     CDS             1296..2786
                     /locus_tag="VE686_05115"
                     /inference="COORDINATES: protein motif:HMM:NF024792.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pilus assembly protein TadG-related protein"
                     /protein_id="HYY83866.1"
                     /translation="MAFGMLRKAAATLAVDERGAVGILMALSAPVLAGMAMLAIDAGR
                     YMNLHTSVQRGADALALAAAAELDGKSDSIVRANRALANITSNDPRFGTSSGRITAAS
                     VRYLTALPTSDATAIPAANVTTDPTRAAYVEVVANPVGFSSLFSKAAHAVGGPSEARA
                     TAVAGFDSAACNIAPLFMCNPMEESTTSIFTAAQDPNFRRRLMSVRAKGSSVGPGNYG
                     FLQPAYGTGGAAVQNALAIDEPRGCYPKSGVELQTGNIASTAEAMNVRFDMYEGSWGT
                     SKGDPAYRPARNVRRGFTGSGCSATVAYTPTKPPTDALNLGKPLGLPRDSCFYTNTCS
                     FGGTAVDGRIGEGDWDFQTYWDRTHGGSYPNSWSNSNRPSRYEVYRYEIDNNLSGNLT
                     AATTGTNRESGAPMCYTGGATTLADTPDRRTFVGALINCEAAIAAGQMTGSSGGRIPV
                     VAYAKFFMTEPMDKNDGTIWAEMVELVEPGTLTARTYIRDSVQLYR"
BASE COUNT          493 a         1108 c         1004 g          417 t
ORIGIN      
        1 cacgccgacc gcagccgcag cgcccggcga ccagccatcc cgcgccgacg cgggcgcagc
       61 ggcgccggcc agcaccgttg cgacgagaac accacaagcc acgcgtttca tgtccgcacc
      121 tcgaggaaag acgttgttcg aaaaaatcct cgcgccgtcc cggttaacga tcggttacgc
      181 gaccgcgtcc cggatgcggc caggaatgcg acgctgttga gcggacgcgt gaacgccgga
      241 tttaccgcgc ccgcaggtga tgcgatccga ttcaccgatg tttcaccgcg cccgccccat
      301 ctccacgtgg acaggcctga agcaggtcgg cgggatttct ctccgtgcgc tcgaaaacca
      361 tcatcatgat cgcgcttgcg ctgctcttcg gagccggcgc catcttcgcc gcgcagaact
      421 gggtggcgcg ccagaacagc gagcgcctgc gcaccgtcga ggtcgcgccg aagccgctgc
      481 cgaccgacac ggtcgtggtg gcggcgctac cgttccgctt cggaaccgag gtgaccaagc
      541 agcacctgcg cgaggtggcc tggcccgccg gcacggcgcc caagggcgcg ttctcgaaga
      601 tcgacgaggt gctcgacggc aagacgcgcc gcgtcgcgct ggcggccgtc gtcgagaacg
      661 agccgctcct gaggaccaag gtcacgggcc ccggacagcg cgcgtccctg tcggcgctga
      721 tcgccccgga catgaaggcc gtcaccgtgc gggtcaacga cgtcaacggc gtcgccggct
      781 tcgtccttcc gggcgagcgc gtcgacatcc tgctcacgcg cagcctcgac aagggccagg
      841 gcttcgccga cgtgctgttg cagaacgtca acgtgctcgc cgtcgaccag ctcgccgacg
      901 accatgccga caagcccgcg ctggtgaagg ccgtgaccct cgaggtcaac accgcgcagg
      961 cccagaagct ctcgctcgcc accaacgtgg gcagcctctc gctcgtgctg cgggccgccg
     1021 gcgccgccac cgtcgagacg ccccagcgcg tcgccgtcac cgacctgtcg cagttcgacg
     1081 aggcgccgcc ccaggttgcc gccgcgaccg ttcctgcgcc tcccgctccg gctccccctc
     1141 cggtcactgc ggctgcgccc gtcgcgaccc gcatcgtcgc cgtcggcgtc acgcgcggga
     1201 tgaagcggga tgaatacagc gtcccacgcc agggcacggt cgacgtcggc gacattgcca
     1261 ccggctcgac cacgcctcgc cgctaggagt gtacggtggc attcgggatg cttcggaaag
     1321 ccgcagccac tcttgcggtc gacgagcggg gcgcggtcgg catcctgatg gcgctgtcgg
     1381 cgccggtgct tgccggaatg gcgatgctcg ccatcgatgc cgggcgctac atgaacctgc
     1441 atacatccgt gcagcggggc gccgatgcgc tcgcgctcgc ggccgccgcc gagctcgacg
     1501 gcaagtccga ttccatcgtc cgtgccaacc gggcgcttgc caacatcacc agcaacgatc
     1561 cgcgctttgg aaccagcagc ggccgcatca ccgcggcgag cgtgcgctac ctcacggcct
     1621 tgccgacgag cgacgccacg gcgattccgg ccgccaacgt cacgacggac cccaccaggg
     1681 ccgcgtacgt cgaggtggtc gccaatccag tcggcttctc gtcgctgttc tcgaaggccg
     1741 cgcacgccgt cgggggcccc tcggaggcgc gggctaccgc ggtggcgggc ttcgacagcg
     1801 cggcctgcaa catcgctccc ctgttcatgt gcaaccccat ggaggagagc acgacgagca
     1861 tcttcacggc ggcgcaggac cccaacttca ggcggcggct catgtcggta cgggcgaaag
     1921 gctcgagcgt cgggcccggg aactacggct ttctccagcc ggcgtacggc acgggaggcg
     1981 cggccgttca gaacgcactc gccatcgatg agccgcgggg ctgctatccg aagagcggcg
     2041 tcgagctgca gaccggcaac atcgcgtcca cggccgaggc aatgaacgtg cgcttcgaca
     2101 tgtacgaggg cagctggggc acctcgaagg gcgatcccgc ctaccggccc gcgcgcaacg
     2161 tgcgccgcgg gtttacgggg tccggctgca gcgcgacggt cgcctacacg ccgaccaagc
     2221 cgcccacgga cgcgctcaac ctcggcaagc cgctcggcct gccgcgggac tcgtgcttct
     2281 acaccaacac ctgcagcttc ggcggcaccg ccgtcgacgg ccgcatcggc gaaggtgact
     2341 gggacttcca gacctactgg gaccgcacgc acggcggcag ctatccgaac agctggtcga
     2401 acagcaatcg cccgagccgc tacgaggtct acaggtacga gatcgacaac aatctctcgg
     2461 gcaacctgac ggcggcgacc acgggcacga accgcgagag cggggcgccg atgtgctaca
     2521 cggggggcgc cacgacgctc gccgataccc cggatcggcg cacgttcgtc ggcgccctga
     2581 tcaactgcga ggccgccatc gcggccgggc agatgaccgg ttcgtcgggc ggacgcatcc
     2641 cggtcgtcgc ctacgccaag ttcttcatga cggagccgat ggacaagaac gacggcacca
     2701 tctgggccga gatggtcgag ctcgtcgagc cgggcacgct gaccgcgcgc acctacatcc
     2761 gcgacagcgt gcagctctac cgctgaggtc tgggcgcatg tcgatccgtc gactgccgcg
     2821 ggagacttta agcgcaagtt agcgaggcgg gcctaagctg cggccacgtc cagcctgaac
     2881 cccgcaagac accggtgacg accatcctcg cgcgcccttt cgagcctcgg tgcggaccgg
     2941 cgccgcgccc ccggcgtggg cgggggctgc gcctcgtcct gcgcgcctgg cgcgacgagc
     3001 gcggcgccgc cgcgatcgag gc
//
LOCUS       DASQWN010000268         3781 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_518491, whole genome shotgun sequence.
ACCESSION   DASQWN010000268 DASQWN010000000
VERSION     DASQWN010000268.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 3781)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3781)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3781
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_518491"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(46..714)
                     /locus_tag="VE686_05120"
     CDS             complement(46..714)
                     /locus_tag="VE686_05120"
                     /EC_number="1.11.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018182435.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008379 - thioredoxin peroxidase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peroxiredoxin"
                     /protein_id="HYY83867.1"
                     /translation="MTLQIGAEAPDFEAETTQGRIRFHDWIGTSWCVLFSHPKDFTPV
                     CTTELGYMARIKPEFDKRDVKIIGLSVDSVDRHGKWAEDIRETQGTAPNYPMIGDPDL
                     SVSKLYGMLPASAGATSEGRTPAENQTVRNVFVIGPDKKIKLVLVYPMTTGRNFDEVL
                     RVIDSLQLTAKHRIATPVNWKPGEDVIIAGSVTDEEARTIYPDGWTAPKPYIRIVPQP
                     TASS"
     gene            906..1598
                     /locus_tag="VE686_05125"
     CDS             906..1598
                     /locus_tag="VE686_05125"
                     /EC_number="4.6.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010968219.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009975 - cyclase activity [Evidence IEA];
                     GO_function: GO:0016849 - phosphorus-oxygen lyase activity
                     [Evidence IEA];
                     GO_function: GO:0032555 - purine ribonucleotide binding
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenylate/guanylate cyclase domain-containing
                     protein"
                     /protein_id="HYY83868.1"
                     /translation="MRVPVPLRGPASVPFRMFGIRPSRMNPNTCTVCELMFTRVMKAR
                     NISVDVSVLFADLRGYTALSQTLAPEVVSTLLDSFYDECAAAIWEYDGLLNKTIGDAV
                     MAIFGFPIRQDDHPARALSAAREIQSRCAARRDGLPGNPTSDADAYLGVGIGIDCGMT
                     RFGEFGRAHRDLTAVGTVVNTAARAQAAAKAGEILFTQAVHDRGGSAILGSKLEEHAL
                     KGFEHPVQLYAM"
     gene            1957..2310
                     /locus_tag="VE686_05130"
     CDS             1957..2310
                     /locus_tag="VE686_05130"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY83869.1"
                     /translation="MNAAAYSVALVIAAGEIARFWGSDRFIPSALDELLIAVALVWAA
                     WRSRHDGARWHLAAWGAFCGLALVLLVQTADHQIHGPTKPAGHIYLAALSAMLLVGLW
                     AVGRALQLVRRDGGR"
     gene            complement(2224..3237)
                     /locus_tag="VE686_05135"
     CDS             complement(2224..3237)
                     /locus_tag="VE686_05135"
                     /inference="COORDINATES: protein motif:HMM:NF016214.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal-dependent hydrolase"
                     /protein_id="HYY83870.1"
                     /translation="MDNLAHGLAGAALGEAGLKKKTGLGMATLIIAANLPDVDALGLL
                     FGENLAWRRGWTHGLVLPPLLVGAMVLFDRWQARRGARPAERLPIHVGWLLALAYIGW
                     ASHPLLDFMNTYGIRLLMPFSERWFYGDTLFIIDVWLWTALAIGVWLSRRRRRRGSAH
                     PGRPALMSLCVAAAYTTAMGVSSIAAERLTREVAQARGHGPIRTVVASPVPINPFRRD
                     VVFSTDDGYGFGVLRWTPSASLHLAPGLIGKNMDHPAVAEARQEKPIADFLYWSRLPF
                     ATVEHRVDGTIVTIADARYSNGATPGRFVRTLRLPPAVAPNQLQRAPDSPQPDKQHGA
                     ERR"
     gene            complement(3368..>3781)
                     /locus_tag="VE686_05140"
     CDS             complement(3368..>3781)
                     /locus_tag="VE686_05140"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY83871.1"
                     /translation="ARNGPALLEAVTSGEADVGLGTGTHQPLLADGRVRVVAQLHPRA
                     KAGSGPTPQDFGVVATLDNFILISAPKGVAPDARARLVARLAEAVAAAPIETLLTERL
                     LMEPGLLQGEELAAAMAAQKQAFATLRSRIAGRGD"
BASE COUNT          614 a         1227 c         1279 g          661 t
ORIGIN      
        1 ggcggcgtgc cgaagccgct gcgccccggg agctctatga cgggtttagg agctagccgt
       61 tggctgtggg acgatccgga tatagggctt gggcgctgtc cagccgtccg ggtagatcgt
      121 cctggcctcc tcgtccgtga cagagcccgc gatgatcacg tcctcgcctg gtttccaatt
      181 tacaggcgtt gcgatccggt gcttggcggt gagctgcagc gagtcgatga cccgcagcac
      241 ctcgtcgaaa ttccgtccgg ttgtcattgg gtagacgagc acgagcttga tcttcttgtc
      301 cgggccgatg acgaacacgt tgcggactgt ctggttttcg gccggtgtgc gcccttcgga
      361 tgtcgccccc gcgctcgccg ggagcatgcc atagagcttc gaaacgctga ggtcggggtc
      421 accaatcatc ggatagttgg gcgccgtgcc ttgcgtctcc ctgatgtcct cggcccattt
      481 gccatgccgg tccaccgagt cgacgctcaa gccgatgatc ttgacgtccc gcttgtcgaa
      541 ctcgggcttg atccgggcca tgtagccaag ctcggtcgtg cacactggcg tgaagtcttt
      601 cgggtgagag aacagcacac accatgacgt gccgatccag tcgtgaaagc ggatgcgccc
      661 ctgcgtcgtc tcggcctcga agtcgggcgc ctctgcaccg atctggagcg tcatgacaaa
      721 cctcccctca caaccgcctg tcgttagagg actatagcgg ccccgttgcg ggaccaccat
      781 cactcctctg cggtatgggc gccgcgcttg cccgcgcggt cacataggag caggctggac
      841 gagcgcggag gaggcggcga gtggctagcc cgcggtccag gatctgcaaa ggctgctggc
      901 aacaaatgcg cgtgccggtg ccgctacgcg gtccggcctc tgtcccgttt cgcatgttcg
      961 gcatccgccc cagtcgcatg aaccccaaca cttgtaccgt gtgcgagctc atgttcacgc
     1021 gcgtgatgaa agctcggaac atcagcgttg atgtctcggt cctcttcgcc gacctgcgtg
     1081 ggtataccgc cctctcacaa accctcgctc cggaggtggt ctcgaccctg cttgattcct
     1141 tctacgatga atgcgccgcg gcgatttggg aatatgacgg ccttctgaac aagacgatcg
     1201 gagacgccgt gatggcgatc ttcggcttcc cgatccggca ggatgaccac ccagctcgcg
     1261 ccctttcggc agctcgcgaa atccagagcc gctgcgccgc ccgtcgggat ggtcttccgg
     1321 gaaatccgac cagcgacgcc gatgcctacc tgggtgtggg gatcggcatc gactgcggaa
     1381 tgaccaggtt cggcgagttc ggccgggcgc atcgggacct tacggctgtc ggaaccgtcg
     1441 tgaacacggc tgcccgggct caagcggccg ccaaagctgg cgaaatcctg ttcactcaag
     1501 cggttcatga tcgtggtgga agtgcgatcc tcgggagcaa gctcgaagag catgcactga
     1561 aggggttcga gcaccctgtg caactctatg cgatgtgaca ggcgcagcag cggttcgccg
     1621 tgaagacgct gaaggcggta cactctctcg cgtaagccgg tgctacggag ccgctgaaga
     1681 ggtcaaacgc aagcacgtcg gcacgctggc ccttgcatcg gagcggctgt gacgccctat
     1741 gtgtcaggtc aagaccttac gcctgccgag ctcaaccggc tgccgatctg agcgtccact
     1801 tccgtcatac ggtgcccaaa gctcctgggc gcccgggagg ctggtgtcgc tgctcttgcg
     1861 ctcagaccgg gcgatccgga tcacaggggg agtggccgac aacgattttt gcctacgggc
     1921 tcgcaaagcc gactagggtt cggggctatg ggagcattga atgcagccgc gtactcggtc
     1981 gcgctcgtca tcgcagccgg cgagatcgcc cgtttctggg gcagcgaccg cttcattccg
     2041 tcggcgctcg atgaactcct gatcgccgtg gcgttggtct gggctgcatg gcggtcgagg
     2101 cacgacggtg cccgctggca cctcgcagca tggggagcct tctgcggtct ggcgctcgtt
     2161 ctgctggtcc agaccgccga ccatcagatc catggaccca cgaagccggc cgggcacatc
     2221 tatctagcgg cgctcagcgc catgctgctt gtcgggctgt gggctgtcgg gcgcgcgctg
     2281 cagctggttc ggcgcgacgg cgggcggtag gcggagcgtt cggacgaacc gtcccggggt
     2341 cgcgccattg ctgtaccgtg catcggcaat ggtgacgatc gtcccgtcga cgcggtgctc
     2401 gaccgtcgcg aagggaaggc gcgaccagta gaggaagtcc gcgatcggct tctcctgccg
     2461 cgcctcggcg acagccggat gatccatgtt ctttccgatc aggccggggg ccagatgcaa
     2521 gctggcggac ggcgtccagc gcagcacgcc aaagccgtag ccgtcatcgg tgctgaacac
     2581 gacgtcgcgc cggaatgggt tgatcggcac gggactggcc accacggtcc ggatcgggcc
     2641 gtgaccccgc gcctgggcca cctctcgcgt cagccgctcc gcagcgatgc tgctcacgcc
     2701 catggccgtg gtgtaggccg cggcgacgca gaggctcatg agtgccgggc ggccgggatg
     2761 tgcagaccct cggcgccgcc ggcgcctcga gagccagacc ccgatcgcaa gggccgtcca
     2821 tagccagacg tcgatgatga aaagcgtgtc gccgtagaac caccgctcag agaacggcat
     2881 gagcagtcgg atgccgtagg tgttcatgaa gtcgagcagg gggtgcgagg cccagccgat
     2941 gtaggcgagt gcgagcagcc agccgacgtg tatgggcagt cgctcggccg ggcgcgcgcc
     3001 ccgccgggcc tgccagcgat cgaacagcac catggctccg acgagcagcg gcggcagcac
     3061 gagaccgtgc gtccagcccc gacgccaggc gaggttctcg ccgaacagga ggccgagcgc
     3121 gtccacgtcg ggcaggttgg cggcgatgat gagggtggcc atcccgaggc cggtcttctt
     3181 cttgaggccg gcttccccga gcgctgcacc tgccagacca tgcgcgagat tatccaagcc
     3241 agccctttct cagcatgccg caggtgaaga ctgccgggga gcttgctgcc tcaagcacct
     3301 ccggcttcga caaggaacga gccccgggga ttgagccccc gactcacgtt atcaactaag
     3361 catggaccta gtctccgcga ccggcgatcc gcgagcgcaa ggtcgcgaac gcctgcttct
     3421 gggccgccat ggcggccgcg agctcctccc cctgcaggag gccgggctcc atcaggaggc
     3481 gctcggtcag aagcgtctcg atcggtgcgg cggccaccgc ctccgcaagc cgcgcaacga
     3541 ggcgggcgcg cgcgtccggg gccactccct tgggggcgga gatcaggatg aagttgtcga
     3601 gggtcgcgac gacgccgaag tcctgcgggg tcgggccgct gcccgccttg gcgcgcgggt
     3661 gcagctgcgc cacgacgcgg acacggccgt cggcgaggag cggctggtgc gtgccggtgc
     3721 cgaggccgac gtcggcctcg ccgctcgtca ccgcctcgag cagcgccggg ccgttgcggg
     3781 c
//
LOCUS       DASQWN010000269         2101 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_46938, whole genome shotgun sequence.
ACCESSION   DASQWN010000269 DASQWN010000000
VERSION     DASQWN010000269.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2101)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2101)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2101
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_46938"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..903)
                     /locus_tag="VE686_05145"
     CDS             complement(<1..903)
                     /locus_tag="VE686_05145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009490775.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug effflux MFS transporter"
                     /protein_id="HYY83872.1"
                     /translation="MQLKPDTLAMTAVLAFLTALGPLSTDMYLPSLPAIARDLGATAA
                     QTQLTLSAFLFGFAVGQLFYGPIADKIGRRPVLLFGLGLFLAATLACTLAPGIGTLTG
                     ARFCQALGASGPIVLGRAMVRDLYEGPRAGRELSRMGSIMGVVPAIAPVFGGVLQDLF
                     GWRSTFATTLIVGAALAATVAALLPETLRARSTAPLSLVGVVRGFGTLLRHRGYRVYV
                     ALVALTYGGLFAFISGSSFILQDVYGLSEIAYGFSFGLTVIGFISGTMLAQRLVGRRG
                     LDGTIARGVACLALGGSLMLILVAA"
     gene            complement(961..1701)
                     /locus_tag="VE686_05150"
     CDS             complement(961..1701)
                     /locus_tag="VE686_05150"
                     /EC_number="3.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003604516.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008237 - metallopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SprT family zinc-dependent metalloprotease"
                     /protein_id="HYY83873.1"
                     /translation="MRFALFRRNPDPPHLEVAHAGRSFRVVLKRRPTARRITLRVSNA
                     TGEVVLTLPEHAELGAARRFADAHGGWIASRLERVPRRVTFKHGATVPFRGVPHRIAH
                     WSNIGGSTEATVDPYGEAVLAVTCDTPHVARRVREFLEREARKDLARAVRKYTTALGV
                     TAKRIAVRDTKTRWGSCSAKGCLSFSWRLILAPHYVLDYLAAHEVAHLKEMNHSHRFW
                     RELHRLCPRTEEAERWLKRHGTELHRYG"
     gene            complement(1760..>2101)
                     /locus_tag="VE686_05155"
     CDS             complement(1760..>2101)
                     /locus_tag="VE686_05155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018259498.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyhydroxyalkanoate depolymerase"
                     /protein_id="HYY83874.1"
                     /translation="VFVKHELPKGEMMHRDKPVDLLAIRRCAIMAVEGEKDDISGVGQ
                     TLAALQLTPNLPTDKKTYHLQLGVGHYGVFNGSRFKSEIAPRIADFILTHEMDAKGIK
                     ARPMPALAAAE"
BASE COUNT          342 a          689 c          783 g          287 t
ORIGIN      
        1 ggcggcgacg aggatcagca tgagcgagcc gccgagggcg aggcaggcga cgcctcgggc
       61 gatggtgccg tcgaggccgc ggcggccgac gagccgctgc gccagcatgg tcccggagat
      121 gaagccgatg acggtcaggc cgaacgagaa gccgtaggcg atctctgaca ggccgtagac
      181 gtcctggagg atgaaggacg accccgagat gaacgcgaaa agcccgccgt acgtgagggc
      241 gacgagggct acgtagaccc ggtagccccg gtggcgcagg agcgtgccga aacctctgac
      301 gacgccgacg agcgacaaag gggcggtcga gcgggcgcgc agggtctcgg gcaggagagc
      361 cgccaccgtg gccgcgagcg ccgcgccgac gatcagcgtg gtggcgaagg tcgagcgcca
      421 gccgaacagg tcctgcagca cgccgccgaa caccggcgcg atcgccggca cgacccccat
      481 gatcgagccc atgcgcgaca gctcgcgccc ggcccgcggc ccctcgtaga ggtcgcgcac
      541 catggcccgg ccgagcacga taggccctga ggccccgagg gcctggcaga agcgggcgcc
      601 tgtcagagtg ccgattccag gcgcgagggt gcaggccagc gtggcggcga ggaacagccc
      661 gaggccgaac agcagcaccg gtcggcgtcc gatcttgtcg gcgataggac catagaagag
      721 ctggcccacc gcgaagccga acaggaatgc cgaaagcgtg agctgcgtct gcgccgccgt
      781 cgcgcccaaa tcgcgcgcaa tcgccggcaa cgagggcagg tacatgtctg tcgacaaggg
      841 cccgagcgcc gtgaggaacg ccaggacggc cgtcatggcg agggtgtcgg gcttgagctg
      901 catcaggggc gcaatagcgg gtccgacgcg ccctgtctcg cgtcgcaccc cgggcggcgg
      961 tcagccgtac cggtgcagct cggtcccgtg gcgcttgagc cagcgctcgg cctcttccgt
     1021 gcgcgggcag aggcggtgca gctcgcgcca gaagcggtgc gagtggttca tctccttcag
     1081 gtgcgcgacc tcgtgggcgg cgaggtagtc gagcacgtaa tggggcgcga ggatcaggcg
     1141 ccacgagaag ctcaggcagc ctttagccga gcatgagccc caacgggtct tggtgtcgcg
     1201 caccgcgatg cgcttcgccg tgacgccgag cgccgtcgtg tacttgcgta ccgcccgggc
     1261 aaggtctttt cgcgcctcgc gctccaggaa ctcgcgcacc cggcgtgcga cgtggggcgt
     1321 gtcgcacgtc acggccagca cggcctcgcc gtacggatcg acggtcgcct cggtcgagcc
     1381 gcctatgttc gaccaatggg caatccggtg gggcacgccg cggaagggga ctgtggcccc
     1441 gtgcttgaag gtcacccggc gcggcacccg ctcgaggcgc gacgcgatcc agccgccgtg
     1501 cgcgtcggca aagcggcgcg cggcgccgag ctcggcgtgc tctggcagcg tgaggaccac
     1561 ctcgccggtg gcgttcgaga cacgcaaggt gatgcggcgg gcggtcgggc ggcgcttcag
     1621 gaccacgcgg aacgaccgcc cggcgtgcgc aacctcgagg tgcggcgggt cggggttgcg
     1681 gcggaagagg gcgaatctca tggccgccca ctttggcgcg cgtcgccgtg cttgtcagcg
     1741 acgcgctttg ccgctgcttc tactctgctg cggccagggc gggcatcggc cgcgccttga
     1801 tgcccttcgc gtccatctcg tgggtcagga tgaaatcggc gatgcggggc gcgatctcgg
     1861 acttgaagcg cgagccgttg aagacgccgt agtgaccgac gccgagctgc aggtggtagg
     1921 tcttcttgtc cgtcggcagg ttcggcgtga gctggagcgc agcaagcgtc tggccgacgc
     1981 ccgagatgtc gtccttctcg ccctcgacag ccatgatggc gcagcgccgg atcgcgagga
     2041 ggtccaccgg cttgtcccgg tgcatcatct cgcctttcgg caactcatgc ttgacgaaaa
     2101 c
//
LOCUS       DASQWN010000270         2132 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_640681, whole genome shotgun sequence.
ACCESSION   DASQWN010000270 DASQWN010000000
VERSION     DASQWN010000270.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2132)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2132)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2132
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_640681"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1179
                     /gene="serS"
                     /locus_tag="VE686_05160"
     CDS             <1..1179
                     /gene="serS"
                     /locus_tag="VE686_05160"
                     /EC_number="6.1.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009764560.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004828 - serine-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006434 - seryl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine--tRNA ligase"
                     /protein_id="HYY83875.1"
                     /translation="LKGSVPQLEQAEREAEKALEDALAVIPNLPKSDVPIGPDETGNV
                     EKSRFSNPRNLPTAKQHFEIGEAMGLMDFEAAAKLSGSRFVVLRGQLARLERALGQFM
                     LDLHTTEHGYTEVAPPLLVRDEVMFGTAQLPKFADDQFSAARTVTRAELLRAGLKYAS
                     AGDQERYRAGALPLDELVDRTLERAPLKEDFWLIPTAEVPLTNLAREQILSDAELPLR
                     YTALTPCFRAEAGAAGRDTRGMLRQHQFTKCELVSITAPEASAEEHERMLACAEEVLR
                     RLDLPYRVMTLCTGDMGFAAAKTYDIEVWLPGQGTYREISSCSVCTDFQARRMNARYR
                     AKDSKSPRFVHTLNGSGVAVGRALIAVMENYQNEDGSVTVPEALAPYMGGITRIEARA
                     "
     gene            1179..1940
                     /gene="surE"
                     /locus_tag="VE686_05165"
     CDS             1179..1940
                     /gene="surE"
                     /locus_tag="VE686_05165"
                     /EC_number="3.1.3.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015933693.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008252 - nucleotidase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="5'/3'-nucleotidase SurE"
                     /protein_id="HYY83876.1"
                     /translation="MRILCTNDDGIHAPGLKSLERIAAELSDDVWVIAPETDQSGVSH
                     SLSLNDPLRLREITPRHFAVKGTPTDCVIMGVRHVMAEVRPDLVLSGVNRGQNVAEDV
                     SYSGTVAAAIEGTILGVPSIALSQAYGPGGRTAVKWACAERHGPRVIRRILELGMPRS
                     TLVNVNFPDCEPQEVEGTEAATQGVRNQELLRIDERMDGRGNAYFWIAFEKRRTEPER
                     GTDLWAIANNRISVTPLRLDLTDRPTLTHFAQSFD"
BASE COUNT          352 a          774 c          705 g          301 t
ORIGIN      
        1 ctcaagggaa gcgtgccgca actggagcag gctgagcgcg aggccgaaaa ggcgctggag
       61 gatgcgctcg cggtcattcc gaacctgccg aagtccgacg tgcccatcgg cccggacgag
      121 accggcaacg tcgagaagag ccgcttcagc aacccgcgca acttgcccac cgccaagcag
      181 catttcgaga tcggggaggc catgggcctc atggatttcg aggccgccgc caagctctcc
      241 ggctcgcgtt tcgtggtgct gcgcggccag ctcgcccgcc tggagcgcgc gctcggtcag
      301 ttcatgctcg acctgcacac caccgagcac ggctacaccg aggtcgcgcc gccgctgctg
      361 gtgcgcgacg aggtcatgtt cgggacggct cagctgccga agttcgccga cgaccagttc
      421 tcggccgccc gcaccgtcac gcgagccgag ctgctgcgcg ccggactcaa gtacgcgagc
      481 gcgggcgacc aggaacgcta tcgcgcagga gcgctgccac tcgacgagct tgttgatcgc
      541 accctcgagc gggccccgct gaaggaggat ttctggctca tcccgaccgc ggaagtcccc
      601 ctcaccaacc tcgcccgcga acagatcctc tcggacgccg aactcccctt gcgctacacc
      661 gcgctgacgc cctgcttccg cgccgaagcg ggcgcggccg gccgcgacac ccgcggcatg
      721 ctgcggcagc accagttcac caagtgcgag ctcgtctcga tcactgcgcc ggaagcttcc
      781 gccgaggagc acgagcgcat gctcgcctgc gccgaagaag tcctgcgccg cctcgacctg
      841 ccgtaccgcg tcatgaccct gtgcaccgga gacatgggct ttgcggcggc caagacctac
      901 gacatcgagg tctggctccc ggggcagggg acctaccggg agatctcgtc gtgctccgtg
      961 tgcacggact tccaggcccg gcgcatgaac gcgcgctatc gcgccaagga ctcgaagagc
     1021 ccgcgcttcg tgcacacgct caacggctcc ggggtcgccg tcggccgcgc gctcatcgcc
     1081 gtcatggaga actaccagaa cgaggacggc agcgtgaccg tccctgaagc gctcgcgcca
     1141 tacatgggcg gcatcacccg catcgaggcg cgggcgtgat gcgcatactc tgcaccaacg
     1201 acgacggcat ccatgcgccg gggctgaagt cgctcgagcg catcgcggcc gagctctcgg
     1261 acgatgtctg ggtgatcgcg cccgagacgg atcagagcgg cgtctcgcac tcgctctcgc
     1321 tcaacgaccc cttgcggctg cgcgagatca cgccccgcca cttcgccgtg aagggcacgc
     1381 cgacggactg cgtcatcatg ggagtgcgcc acgtcatggc cgaggtgcgg cccgacctcg
     1441 tgctgtcggg ggtgaaccgc ggccagaacg tcgccgagga cgtgagctac tcgggcacgg
     1501 tcgccgccgc catcgagggc accatcctcg gcgtgccgtc gatcgcgctg tcccaagcct
     1561 acggccccgg cggccgcacg gcggtgaaat gggcctgcgc cgagcgccac ggtccgcgcg
     1621 tcatccgccg catcctcgag ctcggcatgc cgcgcagcac gctcgtcaac gtcaacttcc
     1681 ccgactgcga gccgcaggag gtcgaaggga ccgaggcggc gacgcagggc gtgcgcaacc
     1741 aggagctcct gcgtatcgac gagcgcatgg acgggcgcgg caacgcctac ttctggatcg
     1801 ccttcgagaa gcggcgcacg gagccggagc gcggcacgga cctgtgggcc atcgccaaca
     1861 accgcatcag cgtgacgccg ctgcggctcg acctcaccga caggccgacg ctgacgcatt
     1921 tcgcgcaaag cttcgattaa cgagcggcgg ttacggttga cggatggtta cgtccgtcgc
     1981 cgaagcgcct ccccgacact caggagtcct cgatgccgcc ccggaggcgg tcgaggccgc
     2041 tgccttcgtg ctggccctgc gcgcccgcgg catccgcgac actggcgtgc tgggcgccat
     2101 ggagcgggtg ccgcgcgagc tcttcgcacc ga
//
LOCUS       DASQWN010000271         2258 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_320205, whole genome shotgun sequence.
ACCESSION   DASQWN010000271 DASQWN010000000
VERSION     DASQWN010000271.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2258)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2258)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2258
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_320205"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..201)
                     /locus_tag="VE686_05170"
     CDS             complement(<1..201)
                     /locus_tag="VE686_05170"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY83877.1"
                     /translation="MDRVDPSQVLEQLARKVHGAAYAGGAVVEPARPLFQEGDERVEV
                     ARFDVGVRDKHEVVDAHHGHGLE"
     gene            complement(634..1563)
                     /locus_tag="VE686_05175"
     CDS             complement(634..1563)
                     /locus_tag="VE686_05175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015930257.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-keto-5-aminohexanoate cleavage protein"
                     /protein_id="HYY83878.1"
                     /translation="MAQRKVIITCAVTGAIHTPSMSPHLPITAEEIADAAVGAAEAGA
                     AIVHLHARDPRDGRPDQSPDAFAPFLKVIKQRTAAAINITTGGAPTMGVDERVGPAAH
                     FKPEVASLNMGSMNFGLYPMLARFKDFKHEWERPYLEGSKDRIFKNTFGDIEYILTTC
                     AENGTRFEIECYDIGHLYTLAHFVDRGLVKPPFFVQSVFGILGGIGPHPEDVAHMKRT
                     ADRLFGNQYRWSVLGAGRNQLPIAAMAAAMGGNVRVGLEDSLWIGAGKLAQSNAQQVT
                     KVRQIIEGLGLEIATPDDAREILELKGADRVNF"
     gene            complement(1590..>2258)
                     /locus_tag="VE686_05180"
     CDS             complement(1590..>2258)
                     /locus_tag="VE686_05180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015930258.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0070403 - NAD+ binding [Evidence IEA];
                     GO_process: GO:0006631 - fatty acid metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-hydroxyacyl-CoA dehydrogenase NAD-binding
                     domain-containing protein"
                     /protein_id="HYY83879.1"
                     /translation="VEDKRRIFAELDQAAPADAVLASSTSAIVASKFTEGLVGRARCL
                     VAHPVNPPHLVPIVELCPAPWTAPDVVERARGYYDSVGQVPVHVRKEAFGFVLNRLQA
                     VLMAEAFRLVGDGVVSPQDLDKTIRDGLGLRWSFMGPFETIELNAPGGIPDYCARYAA
                     SLGTLVADAIGPEPFGSKNVEAVLSQWTGSQDGDRVARLTEWRDGRLAALAAHKRAAD
                     KKPD"
BASE COUNT          353 a          745 c          795 g          365 t
ORIGIN      
        1 ttccagcccg tggccatggt gagcatcaac gacttcgtgc ttgtcacgaa ccccgacatc
       61 gaagcgcgcg acctcgacgc gctcatcgcc ctcctgaaac agaggccggg ccggctcgac
      121 tacagctccg ccggcgtagg cagcgccatg caccttgcgg gcgagctgtt caagaacctg
      181 gctggggtcg acgcggtcca cgtgccctac cgcggcgagg ggccggcgct caacgatctc
      241 ttgggcaagc gcatctcgtt cagcttccat ggggtctcga cgacggcgga ccacatcaag
      301 ggcggcacgg tccgcgccat cgcggtcacg ggtccgacgc gctcgccgct cctgcccgag
      361 atcccgacgc tgaaggaggc gggcctaccg aactacgagg cttacacctg gagcgtggtg
      421 ctcgcgcccg ccggaacgcc gcgcgacatc gtcaagcgcc tgaacgtcgc catcaacgcc
      481 gtcgtcaggc agccgcggac gcagcagcgg ttcactgagc tgggattcca ggtcgtcacg
      541 gactcgacgc ccgaaagcac cgccgagcac atccggcgtg aggaggacaa gtgggccccg
      601 atcatcaagg cctcaggcat ccgcgccaac gagctagaag ttcacccggt cggcgccctt
      661 gagctcgagg atctcgcggg cgtcgtcggg ggtagcgatc tcgaggccga ggccctcgat
      721 gatctgacgc accttggtga cctgctgggc gttcgattgc gcgagcttgc cggctccgat
      781 ccacagcgag tcctcaagcc cgacgcggac gttgccgccc atggcggccg ccatggcggc
      841 gattgggagc tggttgcgcc cggcaccgag cacggaccac cggtattggt taccgaacaa
      901 ccggtcggcc gtgcgcttca tgtgcgcgac gtcctccggg tgcgggccga tgccgccgag
      961 gatgccgaac acgctctgca cgaagaaggg cggcttcacg aggccgcggt cgacgaaatg
     1021 ggcgagcgtg tagaggtgcc cgatgtcgta gcattcaatc tcgaagcgcg tgccgttctc
     1081 ggcgcaggtg gtgaggatgt actcgatgtc gccgaaggtg ttcttgaaga tgcggtcctt
     1141 cgagccctcg aggtatggcc gctcccactc gtgcttgaaa tccttgaagc gggcgagcat
     1201 cgggtagagc ccgaagttca tcgaccccat gttgagggac gccacctcgg gcttgaagtg
     1261 cgccgccggg ccgacgcgct cgtcgacgcc catggtcggt gcgccgccgg tcgtgatgtt
     1321 gatggcggcg gccgtgcgct gtttgatgac cttgaggaat ggcgcaaagg cgtcggggct
     1381 ctggtcgggc cggccgtcgc gcggatcgcg ggcgtgaagg tgcacgatgg ccgcgccggc
     1441 ttcggcggcc ccgaccgccg cgtcggcgat ctcctcggcc gtgatcggca gatgcggcga
     1501 catggagggc gtgtggatcg cgcccgtgac ggcgcaggtg atgatgactt tgcgttgagc
     1561 catggcgtcc tccgatcgtt gtcgcgagct tagtccggct tcttgtcggc cgcgcgcttg
     1621 tgggccgcaa gagccgcgag ccgcccgtcg cgccattccg ttaggcgtgc gacccggtcg
     1681 ccgtcctggc tacccgtcca ctgcgagagc acggcctcga cgttcttgct cccgaagggc
     1741 tcgggcccga tggcgtctgc gacgagggtc ccgagcgacg cggcgtagcg ggcgcagtag
     1801 tcgggaatgc cgcctggcgc gttcagctcg atggtctcga acgggcccat gaaggaccag
     1861 cgcaggccga ggccgtcgcg gatcgtcttg tccagatcct gcgggctcac cacgccatcg
     1921 ccgaccagcc ggaaggcttc cgccatcagt accgcctgga gtcgattgag cacgaagccg
     1981 aaggcttcct tgcgcacgtg caccggcacc tggcccacgc tgtcgtagta gccgcgcgca
     2041 cgctcgacga cgtccggggc ggtccagggc gccgggcaga gctcgacgat cggaacgagg
     2101 tgcggcgggt tcaccggatg cgccacgagg cagcgcgcgc gtcccacgag gccttcggtg
     2161 aatttcgaag ccacgatggc cgaggtcgag gaggcgagga cggcgtccgc gggcgcggcc
     2221 tggtcgagct cggcgaagat gcggcgcttg tcctcaac
//
LOCUS       DASQWN010000272         3042 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1038676, whole genome shotgun sequence.
ACCESSION   DASQWN010000272 DASQWN010000000
VERSION     DASQWN010000272.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 3042)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3042)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3042
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1038676"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..204
                     /locus_tag="VE686_05185"
     CDS             <1..204
                     /locus_tag="VE686_05185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020810313.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease subunit"
                     /protein_id="HYY83880.1"
                     /translation="LGWAWTYVIVAELIGSSSGIGHMIIDSQALLATGQMIFGIIVIG
                     IIGLISDFAFKALNRRLFPWRLA"
     gene            201..995
                     /locus_tag="VE686_05190"
     CDS             201..995
                     /locus_tag="VE686_05190"
                     /EC_number="7.6.2.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015927082.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HYY83881.1"
                     /translation="MSRGAKLVIEGLSRVFPGVRGGAPTRALEPTDLAVAENDFITIL
                     GPSGCGKSTLLRIVAGLDRPTTGRVILDGRAVMGPGADRGMVFQSYTLFPWLTVAENI
                     AFGLTERGVSVPQRREIVATYIDKVGLKGFERHYPKQLSGGMQQRTAIARALANDPEI
                     LLLDEPFGALDNQTRSLMQELLLGIWERERKTVLFVTHDIEEAIFLASRTIVMTARPG
                     RIKAEVPVDLPHPRHYRMKTSAEFSALKARLTEEIRVEAVLAAEEH"
     gene            complement(1006..2676)
                     /gene="hutU"
                     /locus_tag="VE686_05195"
     CDS             complement(1006..2676)
                     /gene="hutU"
                     /locus_tag="VE686_05195"
                     /EC_number="4.2.1.49"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019199706.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016153 - urocanate hydratase activity
                     [Evidence IEA];
                     GO_process: GO:0006548 - histidine catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="urocanate hydratase"
                     /protein_id="HYY83882.1"
                     /translation="MTQTRIDNARAIRSPRGPEMSAKSWLTEAPLRMLMNNLDPEVAE
                     KPQELVVYGGIGRAARDWESFDRIVGALRELEGDETLLVQSGKPVGVFRTHADAPRVL
                     IANSNLVPAYASWDHFHELDRKGLMMYGQMTAGSWIYIGSQGIIQGTYETFAEVGRQH
                     FGGSLAGRWILTGGLGGMGGAQPLAATMAGASLLAVECSPSRIEARLRTRYLDTSAQS
                     LNEALAAIERATRERKAVSVGLLGNAAEVFPELVRRGVKPDVVTDQTSAHDPLNGYLP
                     AGWTVAQWEERRERDPRGTVEAAKRSMAVQVEAMLAFWRAGVPTLDYGNNIRQMAQDA
                     GLQDAFAFPGFVPAYIRPLFCRGIGPFRWCALSGDPEDIYRTDARVKELIPDDPHLHT
                     WLDMARERIAFQGLPARICWVGLGQRHRLGLAFNEMVARGEVKAPIVIGRDHLDSGSV
                     ASPNRETEAMRDGSDAVSDWPLLNALLNCASGATWVSLHHGGGVGMGYSQHAGMVIVA
                     DGTPEAARRLERVLWNDPASGVMRHADAGYEDAVACAREFALKLPGLA"
     gene            complement(2673..>3042)
                     /locus_tag="VE686_05200"
     CDS             complement(2673..>3042)
                     /locus_tag="VE686_05200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015318308.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="aromatic amino acid lyase"
                     /protein_id="HYY83883.1"
                     /translation="ENKQRAYPASVDSIPTSANQEDHVSMATHGARRLLSMVANVGNV
                     VAIELLAAAQGCDFHAPMRSSEPLERARALVRARIAHLEDDRYLAPEIAFAAELVRSG
                     VLTDGVAVALPSVLEPEYDA"
BASE COUNT          458 a         1060 c         1052 g          472 t
ORIGIN      
        1 ctcggctggg cctggaccta cgtcatcgtc gccgagctca tcggctcctc ctccggcatc
       61 ggccacatga tcatcgacag ccaggccctc ctcgcgacgg gacagatgat cttcggcatc
      121 atcgtcatcg gcatcatcgg cctcatctcc gacttcgcct tcaaggcctt gaaccggcgg
      181 ctgtttccgt ggcggctcgc gtgagccgcg gcgcgaagct cgtgatcgag ggactgtcgc
      241 gggtctttcc gggcgtgcgc ggcggcgcgc cgacgcgggc gctcgagccg accgacctcg
      301 ccgttgccga gaacgatttc attaccatcc tcgggccgtc cggctgcggg aagtccaccc
      361 tgctccgcat cgtcgccggc ctcgaccgac cgaccacggg ccgcgtcatc ctcgacgggc
      421 gggccgtcat gggacctggc gccgaccggg gcatggtgtt ccagtcctac accctgttcc
      481 cctggctcac ggtggccgag aacatcgcgt tcggcctcac cgagcgcggc gtttctgtgc
      541 cccaacgccg cgagattgtc gccacctaca tcgacaaggt cggcctcaaa ggcttcgagc
      601 ggcactaccc gaagcagctc tcgggcggca tgcagcagcg caccgccatt gcccgcgcgc
      661 tcgccaacga tcccgagatc ctgctcctcg acgagccctt cggggcgctg gacaaccaga
      721 cgcgctctct catgcaagag ttgctgctcg gaatctggga gcgcgagcgg aaaacggtct
      781 tgttcgtaac gcacgatatc gaggaggcga tcttcctcgc ctcgcgcaca atcgtcatga
      841 cggcgcgtcc cgggcgcatc aaggcagaag tgcccgtcga cctcccccac ccgcggcact
      901 accgcatgaa gacaagcgcg gagttttcgg ccctcaaggc ccgcctgacg gaggagatcc
      961 gcgtcgaggc ggtgcttgcc gccgaggagc actagccgcg cgggatcagg cgagtcccgg
     1021 cagcttcagc gcgaactccc gcgcgcacgc gacggcgtcc tcgtagccgg cgtctgcgtg
     1081 ccgcatcaca cccgaagcgg ggtcgttcca cagcacgcgc tcgaggcggc gggccgcttc
     1141 cggcgtgccg tcggcgacaa tgaccatgcc ggcatgctgc gagtagccca tgccgacgcc
     1201 gccgccgtga tgcagcgaca cccaggtcgc gcccgaggcg cagttgagga gcgcgttgag
     1261 gagcggccag tccgagacgg cgtcggagcc gtcgcgcatg gcctcggtct cgcggttggg
     1321 gctcgcgaca gagcctgagt cgagatgatc gcggccgatg acgatcggcg ccttgacctc
     1381 gccgcgcgcg accatctcgt tgaacgcaag cccgaggcgg tggcgctggc cgaggccgac
     1441 ccagcagatg cgcgccggca ggccctggaa ggcgatgcgc tcccgcgcca tgtcgagcca
     1501 ggtgtgcagg tgcggatcgt ccgggatcag ctccttcaca cgggcgtccg tgcggtagat
     1561 gtcctcggga tcgcctgaca gcgcgcacca gcggaacggg ccgatgccgc ggcagaacag
     1621 cgggcggatg taggccggta cgaagccggg gaacgcgaag gcgtcctgca ggcccgcgtc
     1681 ctgcgccatc tggcggatgt tgttgccgta gtcgagggtc gggacgccgg cgcgccagaa
     1741 ggcgagcatg gcctcgacct gcaccgccat ggagcgcttg gcggcctcga ccgttcccct
     1801 ggggtcgcgc tcgcgccgct cctcccactg cgcaaccgtc cagcccgccg ggaggtagcc
     1861 gttgagcgga tcgtgcgcgg aggtctggtc ggtcacgacg tcgggcttga cgccccggcg
     1921 caccagctcc gggaacacct cggcggcgtt gccgaggaga ccgaccgaga ccgccttccg
     1981 ctcgcgcgtc gcgcgctcga tagcggcgag ggcctcgttc aggctctgcg cggaggtatc
     2041 gaggtagcgc gtgcgcaggc gcgcctcgat gcgggacggc gagcactcga cggccagcag
     2101 tgaagccccc gccatggtcg cggcgagcgg ctgcgccccg cccatgccgc ctaggccccc
     2161 cgtgaggatc cagcgcccgg caaggcttcc gccgaagtgc tggcgcccga cctccgcgaa
     2221 ggtctcgtag gtgccctgga tgatgccctg ggagccgatg tagatccacg accccgcggt
     2281 catttggccg tacatcatga gccccttgcg atcgagctcg tgaaagtggt cccaggaggc
     2341 gtaggccggc acgaggttcg agttagcgat gaggacccgc ggggcgtcgg catgggtgcg
     2401 gaacaccccg accggcttgc cggactgcac cagcagggtc tcgtcaccct cgagctcgcg
     2461 caacgcgccg acgatgcgat cgaagctctc ccagtcccgc gccgcgcgcc caatgccgcc
     2521 gtagacgacg agctcctgcg gcttctcggc gacctcggga tcgaggttgt tcatcagcat
     2581 gcgcagcggc gcttcggtga gccagctctt cgcggacatc tcggggccgc gcggactgcg
     2641 gattgcgcgg gcgttgtcga tgcgggtctg ggtcatgcgt cgtactcagg ttctaaaact
     2701 gacggtaatg cgaccgcgac gccgtctgtg agcaccccgc tcctcaccag ctctgccgcg
     2761 aaagcgatct cgggcgcgag atagcggtcg tcctcgaggt gcgcgatgcg ggcccgcacg
     2821 agcgcacgcg cccgctccaa tggctcgctc gagcgcatcg gggcgtggaa gtcgcagcct
     2881 tgggcggcgg cgaggagctc gatggcgacg acgttgccga cgttcgccac catggacagg
     2941 aggcggcgcg cgccgtgggt cgccatcgag acgtggtcct cctggttggc ggaggtggga
     3001 atggagtcga cgctcgccgg ataggcgcgc tgcttgttct cc
//
LOCUS       DASQWN010000273         4463 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1337030, whole genome shotgun sequence.
ACCESSION   DASQWN010000273 DASQWN010000000
VERSION     DASQWN010000273.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 4463)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4463)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4463
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1337030"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            265..993
                     /locus_tag="VE686_05205"
     CDS             265..993
                     /locus_tag="VE686_05205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003602429.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell cycle transcriptional regulator TrcR"
                     /protein_id="HYY83884.1"
                     /translation="MSQGPLMPKATAVWLVENTSLSFEQIADFCKLHPLEVKGIADGE
                     VAAGIKGLDPIGTNQLTREEIEAGEGDPNHRLKMAEAKVKLPEVKRTRKGPRYTPVSR
                     RQDRPNAILWLLRNHGELKDAQIMRLVGTTKTTIQQVRERTHWNSSTLQPMDPVTLGL
                     CSQIDLDFEVGRAAKDKPQAQPAESGQTLLPAEVTTAAPEPASAEPFAAMEPPRRPGA
                     PQEKIDVDSVFAKLKQLKTPADDE"
     gene            complement(1028..1183)
                     /locus_tag="VE686_05210"
                     /pseudo
     CDS             complement(1028..1183)
                     /locus_tag="VE686_05210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016845311.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="TlpA family protein disulfide reductase"
     gene            complement(1183..1836)
                     /locus_tag="VE686_05215"
     CDS             complement(1183..1836)
                     /locus_tag="VE686_05215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011087004.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FMN-binding negative transcriptional regulator"
                     /protein_id="HYY83885.1"
                     /translation="MHILRPPFSMDAEVALEFAAARGFGLVVAADAEGPFGSHVPFVV
                     QRRAEGPVVQFHVTAKNPLADRAASGARLLVAVTGADWYVSNDWYVSRDQVSTWLYEA
                     VHLSGPAHLRDLSENRVHGDDLLAVSEGRLPKKPWVLADMEPTKRQAMLDAIRVVDVH
                     VDRIEGQSKLNQHKSDTDHVAVANALARAPGAPARELALKMRALRPHLTYDVPEAPC"
     gene            complement(2008..2259)
                     /locus_tag="VE686_05220"
     CDS             complement(2008..2259)
                     /locus_tag="VE686_05220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009762631.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY83886.1"
                     /translation="MPRFFFDSRDGDELILDDEGLELAGIEAARDEATAALRDIAKDA
                     IPHSERRELAIEVRDEAGRQILRASLWFEVQVLAEPSLA"
     gene            complement(2292..2999)
                     /locus_tag="VE686_05225"
     CDS             complement(2292..2999)
                     /locus_tag="VE686_05225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009763207.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0030552 - cAMP binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Crp/Fnr family transcriptional regulator"
                     /protein_id="HYY83887.1"
                     /translation="MGVIEALLRKLDRFAPLSPDEKRALEAAVSGVDTYTRHDIIVRQ
                     GDRPTHSCIMVEGMAARYKGLANGNRQIVSFQIPGDFSDLHSMFLKALDHGIEALSPV
                     RIARVPHQSVDALMREHPGLARAFSWDMAVDGAITREWLASTGRRSAYERVAHLLCEL
                     MMRLRSVGLANGDAYELPITQADLSDAFGISTVHVNRMLQTLRRNGLIELKGAALRIP
                     NVAALEEVAGFEAAYLE"
     gene            3194..3523
                     /locus_tag="VE686_05230"
     CDS             3194..3523
                     /locus_tag="VE686_05230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003607143.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux SMR transporter"
                     /protein_id="HYY83888.1"
                     /translation="MAWIMLVAAGLLEIVWAFSMKQSDGFSRLWPSVVTIVTMVLSFV
                     LLAASMRSLPLGTAYTIWTGIGAVGAFIVGIAVLGEAVTAARVIAALLIVGGLVLMKM
                     STDARGV"
     gene            complement(3597..4256)
                     /locus_tag="VE686_05235"
     CDS             complement(3597..4256)
                     /locus_tag="VE686_05235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007561613.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY83889.1"
                     /translation="MPRIAQPRDDAERKINAAIARLDANARKAAAECRKEGRGRGWWE
                     RNVAVPMTGPRFIVYAITDNAFCGGAHPSVGTMAIVYDLTTGSPVDWTALLPPSLTGT
                     VALSTEMDGTKMVTLKSKRLHALYLERYRPKDGDSNADAADDECREAVARADSTEAPA
                     MTVWPDAKEGGLATRFEVAHAVQACVDDVVIPAATLRIEGAKTVLVDALEKAHAAQLK
                     R"
BASE COUNT          724 a         1520 c         1506 g          713 t
ORIGIN      
        1 gaagagggcg cccacatcgg caagatcgtg ctgacgctgt agcgcgccat tcctctcctc
       61 gcgggaggga tttgcgcagc tccatcgcgc cacgctgtcg gctgcgctta cagtttgcca
      121 ggggggcctc ccggccctat attccgggcg gtttcctcac attgtgagac gagctgctcc
      181 gggccacccc ggttcggagc gcaagacgat tttgtcggcg cgcgccccgc ctgtgcggcg
      241 cgacgaccaa ggaggtttca agacatgtcc cagggaccgc tgatgccgaa ggcgacggcc
      301 gtttggctcg tcgagaacac gtcgctgtcg ttcgagcaga tcgccgactt ctgcaagctg
      361 cacccgctcg aggtgaaggg catcgccgac ggcgaggtcg cggccggcat caaggggctc
      421 gacccgatcg gcaccaacca gctcacccgc gaggagatcg aggccggcga gggcgatccg
      481 aaccaccgcc tgaagatggc cgaggccaag gtgaagctgc ccgaggtcaa gcgcacccgc
      541 aaagggccgc gctacacgcc ggtgtcgcgc cgccaggacc gcccgaacgc catcctgtgg
      601 ctcctgcgca accacggcga gctcaaggac gcgcagatca tgcgcctcgt cggcaccacc
      661 aagaccacca tccagcaggt ccgcgagcgc acgcactgga attccagcac gctgcagccc
      721 atggacccgg tgacgctcgg cctgtgctcg cagatcgacc tcgacttcga ggtcgggcgc
      781 gccgccaagg acaagccgca ggctcagccg gccgagagcg gccagacgct cctgcccgcc
      841 gaggtcacga cggctgcgcc ggagccggcg tcggccgagc ccttcgccgc catggagccg
      901 ccgcgccgtc ctggcgcccc gcaggagaag atcgacgtcg actccgtctt cgccaagctg
      961 aagcagctca agacgccggc ggacgacgag taggccaaag cgcagacgag aggcggcacg
     1021 atggcactca gccgccgggc tccgcgaggg cggaggcaag catggcaccg agtgccatgt
     1081 cgtcctcctg cccgaagccg tggtgccgga tggcgccatt ccgtccgacg atgatggtcg
     1141 tgggcgttcc gcgcatgccg tagcgcccca tggtggccgg gatcagcatg gagcctccgg
     1201 gacgtcgtac gtcagatgcg ggcgcagcgc gcgcatcttg agcgcaagct cgcgggccgg
     1261 cgcgcccggc gcgcgtgcca gtgcattggc gacggcgacg tggtcggtgt cggacttgtg
     1321 ctggttgagc ttcgactggc cctcgatccg atccacgtgc acatcgacga cgcggatcgc
     1381 gtcgagcatg gcctggcgct tcgtcggctc catgtcggcg aggacccacg gcttcttcgg
     1441 cagacggcct tcactgacgg ccaggaggtc gtcgccatgg acgcggttct cgctcaggtc
     1501 ccgcaggtgc gccggtccgg acaggtggac ggcctcgtag agccacgtcg agacctggtc
     1561 cctggacacg taccagtcgt tcgagacgta ccagtctgcg cccgtgaccg cgacgaggag
     1621 gcgcgcgccc gatgccgccc ggtccgcgag cgggttcttc gccgtgacgt ggaactgcac
     1681 gaccggaccc tcggcccgcc tttggacgac gaagggcacg tgggatccga acggcccctc
     1741 ggcatcggcc gcgacgacga ggccgaaccc gcgggccgcc gcgaactcca gggcgacctc
     1801 ggcgtccatg ctgaacggcg gacgcaggat atgcatcggg tcctcgaatg cgtgccgtcc
     1861 gaagcggccg atggccgacc cctacttcgc cggcaacgat ctgggcaggt caacgcgccg
     1921 ccaggcggcc ggggtgagct cggggcaggt tagaacgacc gaccaccgct tcataggctc
     1981 ccgagcaggt tcaagcacgc gcgcgcctca agcgagcgag ggctccgcca gcacctgaac
     2041 ctcgaaccag agcgaagccc tgaggatctg gcgaccggcc tcgtcgcgga cctcgatcgc
     2101 cagctcccgg cgctcgctgt gtgggattgc gtccttggcg atgtcccgaa gagcggcggt
     2161 cgcctcgtct cgtgcggctt cgatgcccgc gagctcgagc ccctcgtcgt cgaggatgag
     2221 ctcatcgccg tcccggctat cgaagaaaaa gcggggcatt cagcctcaaa cgcccggcgg
     2281 cactgattag ttcattcgag gtaggcggcc tcgaaaccgg caacctcctc cagggcggcg
     2341 acattcggta tccgcagcgc cgcccccttc aactcgatca gcccgttccg tcgaagcgtc
     2401 tgcagcattc ggttgacgtg gacggtcgaa atcccgaacg cgtcggacag gtcggcttgc
     2461 gtgatcggca gctcgtacgc gtcgccattg gcgaggccga ccgaccgcag ccgcatcatc
     2521 agctcgcaga gcaggtgcgc cacacgctca tacgcggagc gtcgccccgt acttgccagc
     2581 cactcgcgcg taatggcgcc gtcgaccgcc atgtcccagg agaatgcccg cgcgagcccc
     2641 ggatgctcgc gcatgagggc atctacggac tggtgcggca cacgggcgat ccgcacgggc
     2701 gaaagcgcct cgatgccatg atcgagcgcc ttcaggaaca tgctgtgcaa atcgctgaag
     2761 tcgccgggga tctggaacga gacgatctgg cggttgccgt tcgcgaggcc cttgtaccgc
     2821 gccgccatac cttcgaccat gatgcagcta tgggtcggac ggtcgccctg gcgcacgatg
     2881 atgtcgtggc gcgtgtaggt gtccacaccg gacacggcag cctcgagcgc ccgcttctca
     2941 tccggcgaga gcggggcgaa acgatctagc ttccggagca gcgcttcgat cacgcccatt
     3001 tatcgcacgg cgccccgacg gctcctaatc gggttccgac cgagcatggc cgctgcgtcg
     3061 gcgactgcga aggtgcataa aggtcgttga acccggtcct gtccgcctta ttttggggcc
     3121 aagaggccac gtcctccccg tgcgcgggtt caagtccggg acggcccggc agctcgaacg
     3181 agaggagcct gccgtggctt ggatcatgct cgttgccgcc ggtttgctcg agatcgtttg
     3241 ggcgttctcg atgaagcagt cggacggctt cagccgcctc tggccgtcgg tggtcaccat
     3301 cgtgacgatg gtgctgagct tcgtcctgct cgcggcttcg atgcgctcgc tgccgctcgg
     3361 aacggcctac accatctgga ccggcatcgg cgccgtcggg gcgttcatcg tcgggatcgc
     3421 cgttctgggc gaggccgtca cggcggctcg cgtcatagcc gccctcttga tcgtcggcgg
     3481 cctcgtcctg atgaagatgt cgacggacgc ccgaggggtt tgaggcaggc gcgtcgcccg
     3541 agtcgccggc ttggcgctgt gcagagcaac gcaactttgg agcggtttgg ggcgcttcag
     3601 cgcttcagct gagcggcgtg ggccttctca agcgcatcga cgagcacagt ctttgcaccc
     3661 tcgatcctca atgtcgcggc cgggatcacg acgtcgtcca cgcaggcctg cacggcgtga
     3721 gcgacctcga accgggtggc caggccgccc tctttggcgt cgggccagac ggtcatcgcg
     3781 ggcgcctcgg tgctgtcggc gcgcgccaca gcctcccggc actcgtcatc ggcggcgtcg
     3841 gcgttcgagt cgccatcctt tgggcggtag cgctcgaggt aaagggcgtg caggcgcttc
     3901 gatttgagcg tgaccatctt cgtgccgtcc atctccgtcg agagcgccac ggtcccggtc
     3961 agggaaggcg gcaggagggc ggtccagtcc acaggcgacc cggtcgtgag gtcgtagaca
     4021 atggccatcg tgccgacact cgggtgggcg ccgccgcaaa aggcattgtc ggtaatcgca
     4081 taaacgatga agcgcgggcc ggtcatcggg accgcgacgt tgcgctccca ccagccgcgg
     4141 ccgcgccctt cctttcggca ctccgccgcg gccttgcggg cattcgcatc aaggcgcgcg
     4201 atggcggcgt tgatcttgcg ctccgcatca tcgcgcggct gcgcgatccg cggcatggcc
     4261 ccgaggtcct tgtgcaacgc tggcggggac tggacgcgca cgacgcggtc ggccgccgct
     4321 gcagtcccac cgatcaacgt gatgctggcg aggaggataa gcgcagaagg tctccgagcg
     4381 tttcgtgaaa ggctcgacga tccgagcacg caagacactg caacgctcac aaaggctctc
     4441 cctctggtca gccaagcgag cat
//
LOCUS       DASQWN010000274         3956 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1436086, whole genome shotgun sequence.
ACCESSION   DASQWN010000274 DASQWN010000000
VERSION     DASQWN010000274.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 3956)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3956)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3956
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1436086"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..487
                     /locus_tag="VE686_05240"
     CDS             <1..487
                     /locus_tag="VE686_05240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010682568.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="tyrosine--tRNA ligase"
                     /protein_id="HYY83890.1"
                     /translation="QFWRNTEDADVGRFLRLFTILPMSEVGRLQALGGAEVNEAKKVL
                     ATEATALLHGREAAEAAAETARKTFEQGTLAESLPTVEVPAAVLEAGLGVLTAFGPDY
                     AKLVPSTSEARRQVKGGGLRVNDAAVTDERAVLRGSDLTAEGVIKLSFGKKRHVLLRA
                     R"
     gene            complement(599..>3956)
                     /locus_tag="VE686_05245"
     CDS             complement(599..>3956)
                     /locus_tag="VE686_05245"
                     /inference="COORDINATES: protein motif:HMM:NF024516.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="AsmA-like C-terminal region-containing protein"
                     /protein_id="HYY83891.1"
                     /translation="LVIGTVYLRLSAGPVSFSGLPDRVAAALAERIGPGWKVTINDSA
                     IELERGSLALRTVGLDIRDPSGALVVRAPNALVSVDTLSLVSATLQPRSIEFRDLQLR
                     ATMARDGSLSFAPAGEVAEPAVAAAPRAPAPQPELSDPPAPEMLQPSTMSVAVASLFD
                     LILEPSGIVGVLDRASIANARLTLVDADGRERAVFGRVEATFERSDKGRRFDMRLEGP
                     RGAWRLTGEVGGTQKARDGVISASDVPVADLLLLSGLSRAPASTDLKLSGRVQAALTR
                     RWLTRFDAHLTTAPGSIQIHDEDMPPIQVDAASAETSWDESRRTLVLKDLAFRGGRTV
                     IGLTGEMTMGGEEGWRVAVSGKDAVLSGVTPDDAPFPVSSLEARLTGANGGIGIERLA
                     MSGPGLNAEVSGSLLGAADDGGLRLTGRAAGTGAREALRLWPDAVSPKIRRYLVENLR
                     SGLLDSLSLAVALGSRELADATAGRPIPDATMKIDFAIKEAELAVAEGLPPLRKMEVA
                     GTVTGTTANVRSPTALVEMPDGRALAFTAGAFAVANIWSADALGRISFRLDGGADALG
                     SFLQSPVLRSLGGIDLDPASLKGRADLRVAIPLALKNIPAVADLPVSVSGSITDLSIE
                     RAFGKERLEGGAISVSFDKGALAMTGTGKLAGTPATLDVRQPRDGPGEIVVAMTLDDA
                     ARARKGLSFGNQLTGPMPIRVVLPLGPKKAPPRIEADLTRAAIDDFIPGWTKTAGRPG
                     RLSFALVEGKGTELREVHLDSGPVQVRGTVALSADGNLEKAELTTFKLSPGDDLRVQL
                     ERVGGTYKVVARGNMADARPYVKGLSPGSSSAPAKPKRKQHEQSERDIDLDIAANILT
                     GFNDEAMTNASIKAIVRKNELRSVQLAGRFGGAAVSAQTVPQRGAPILNLQAQDAGAL
                     LRFLDVYRRMVRGTLALQVALGDGVQVGSLAVDNFALRAEPALRRIISQNQSPGPDDT
                     GRAVQLPRIDVNDVDFARARVDFTRTAGHLAFRDASIVGAQVGFTLSGWVDFSRDRAD
                     ISGTFVPAYGLNNAFAQVPLFGPLLGGGRNEGLFAVNFRVAGQATAPTLTVNPLSAIA
                     PGFLRKLFGAGSGAVPDDGPRAALPASPER"
BASE COUNT          589 a         1367 c         1435 g          565 t
ORIGIN      
        1 gcagttctgg cgcaacaccg aggacgccga cgtcggtcgc ttcctgaggc tcttcaccat
       61 cctgccgatg agcgaggtcg ggcgcctgca ggccctgggc ggtgccgagg tcaacgaggc
      121 caagaaggtg ctcgcgacgg aggcgaccgc cctcctgcac ggccgcgagg cggctgaagc
      181 ggcggccgag accgcgcgca agaccttcga gcaggggacg ctggccgaga gcctgccgac
      241 cgtcgaggtg ccggcggcgg tcctcgaagc ggggctcggg gtgctcactg ccttcggtcc
      301 cgactacgcc aagctggtgc cgtcaacgag cgaggcgcgc cggcaggtca agggaggcgg
      361 cttgagggtg aacgatgccg ccgtgaccga cgagcgcgcg gtgctgcggg gcagcgacct
      421 cacggccgaa ggcgtcatta agctctcatt cggcaagaag cggcacgtgc tcctgcgcgc
      481 ccgctgacag ccctttggat gcgaaacaac taccgcgcat tatctgcccg agggagccga
      541 tttatgcggt tcgggcacca tcatgatcgc gcgctccgca tgggggcgcc gatggcggtt
      601 accgctccgg gctggccggc agcgccgccc gcgggccgtc gtccgggacg gctcccgacc
      661 cggccccgaa cagcttgcgc aggaaccccg gtgcgatcgc cgacagcggg ttgacggtga
      721 gcgtcggcgc cgtcgcctgc ccggcgacgc ggaagttcac ggcgaacagg ccctcgttgc
      781 gcccgccgcc gaggagcggc ccgaacagcg gcacctgcgc gaaagcgttg ttgagcccgt
      841 aggccggcac gaatgttccg gagatgtcgg cgcggtcgcg cgagaagtcg acccacccgc
      901 tcaaggtgaa tccgacctgc gcgccgacga tcgacgcatc gcggaacgcc agatgtccgg
      961 ccgttcgcgt gaaatccacc cgggcgcggg cgaagtcgac atcgttaacg tcgatgcgcg
     1021 ggagttgcac ggcccgcccg gtgtcgtccg gcccgggcga ctggttctgc gagatgatgc
     1081 gccggagcgc gggctcggca cgcagggcga agttgtcgac cgcaagcgag ccgacctgca
     1141 cgccgtcgcc gagggcgact tgcaaggcga gcgtgccgcg gaccatgcgg cggtagacgt
     1201 cgaggaagcg caggagcgcg ccggcgtcct gcgcctgcaa gttgaggatc ggggcgccgc
     1261 gttgcggcac cgtttgggcc gatacggcgg ccccgccgaa gcggccggca agctgcacgc
     1321 tgcgaagctc gttcttgcgc acgatggcct tgatcgacgc gttggtcatg gcctcgtcgt
     1381 tgaagcccgt caggatgttc gccgcgatgt cgagatcgat gtcccgctcg gattgctcgt
     1441 gctgcttcct cttcggcttt gcgggtgccg agctcgaccc cggcgagagc cccttcacgt
     1501 acggccgggc gtcggccatg ttgccgcgcg ccacgacctt gtaggtgccc ccgacccgct
     1561 cgagctggac ccgcaggtcg tccccaggcg acagcttgaa ggtcgtcagc tcggccttct
     1621 cgaggttgcc gtcggccgaa agcgcgacgg tgccccggac ctgcacgggc ccgctgtcga
     1681 gatggacctc gcgcagctcg gtccccttgc cttcgacgag cgcgaacgac agccgtccgg
     1741 gcctcccggc cgtcttcgtc cagccgggga tgaagtcgtc gatggcggcc cgggtgaggt
     1801 cggcctcgat gcgggggggc gccttcttcg gcccgagggg caggaccacg cggatcggca
     1861 tcgggcccgt gagctggttc ccgaacgaga gccccttacg ggcgcgggcg gcgtcgtcga
     1921 gcgtcatggc gacaacgatc tcgcccggtc cgtccctcgg ctgacgcacg tcgagggttg
     1981 cgggcgtacc ggcgagcttg ccggtgcctg tcatggcgag cgcgcccttg tcgaaggaca
     2041 ccgagatcgc gccgccttcg agcctctcct tcccgaacgc ccgctcgatc gagaggtcgg
     2101 tgatggagcc gctgaccgaa accgggaggt ccgccaccgc agggatgttc ttcagggcaa
     2161 gcgggatcgc gacccggaga tccgcccggc ccttgaggct cgcggggtcg aggtcgatgc
     2221 cgcccaagct gcgtagcacg gggctttgca ggaaggatcc gagcgcatcg gcaccgccgt
     2281 cgagccggaa ggagatgcgc ccgagcgcat cggctgacca gatgttggcg accgcgaagg
     2341 cgccggccgt aaacgccagc gcacgaccgt ccggcatctc cacaagggcg gtcggtgacc
     2401 gcacgttggc ggtcgtcccg gtgactgtgc cggcgacctc catctttctc agcggcggca
     2461 gcccctcggc gacggcgagc tcggcctcct tgatcgcgaa gtcgatcttc atcgtggcat
     2521 cagggatcgg ccgcccggcg gtcgcatcgg ccagctcccg ggacccgagc gcgacggcaa
     2581 gcgacaggct gtcgagcagg cccgaacgga ggttctcgac cagatagcgc cggatcttcg
     2641 ggctcacggc atcaggccag agccggagcg cctcgcgcgc gcccgtgcct gcggcccgcc
     2701 cggtcaggcg caggccgcca tcgtcagcgg cgccgaggag cgagccgctg acctctgcat
     2761 tgagcccggg cccgctcatc gccaggcgct cgatcccgat gccgccgttc gcgccggtca
     2821 gccgggcttc caaggaactc accgggaacg gcgcatcgtc cggcgtcacc ccgctgagga
     2881 cggcgtcctt gcctgacacg gcgacgcgcc agccctcctc gcctcccatg gtcatttcgc
     2941 ccgtcaggcc gatcacagtc cggcccccgc ggaaggcgag gtctttcaag acgagcgtgc
     3001 gccggctctc gtcccacgag gtctcggccg aggcggcgtc gacctggatg ggcggcatgt
     3061 cctcgtcgtg gatctggatg gagcccggcg cggtcgtgag gtgggcgtcg aagcgggtga
     3121 gccaccggcg ggtgagcgcc gcctggacgc ggcctgacag cttcagatcg gtcgaggcgg
     3181 gagccctgga gaggcccgac agcagcagaa ggtcggcaac gggcacgtcg ctggcgctga
     3241 tgacgccgtc ccgcgccttt tgcgtgccgc ccacctcgcc ggtgagccgc caggctccgc
     3301 gcgggccctc gagccgcatg tcgaacctgc gccccttgtc ggagcgctcg aaggtcgcct
     3361 cgacgcggcc gaagaccgca cgctcccgtc cgtcggcgtc gacgagagtc agacgggcgt
     3421 tggcgatcga ggcgcggtcg agcacgccga cgattccgct cggctcgagg atcaggtcga
     3481 acagcgatgc gaccgcgacc gacatcgtcg agggctgcag catctctggt gcagggggat
     3541 cgctcagctc aggctgaggc gctggagccc gcggcgcggc agcgacggca ggctcggcga
     3601 cctcgcccgc cggcgcgaag gacaacgaac cgtcgcgagc catggtcgct cgcagctgca
     3661 agtcccggaa ttcgatcgac cggggctgga gcgtcgcgct gacgagcgac agggtatcga
     3721 cgctgacgag ggcgttcgga gcgcgcacca cgagcgcacc gctcgggtcc cggatgtcga
     3781 gccccacggt gcgtagcgcc aacgagcctc gttcgagctc gatggcggag tcgttgatcg
     3841 tcaccttcca gccgggtccg atgcgctcgg cgagggctgc ggcgacgcga tcgggcaagc
     3901 cggagaagct gacgggcccc gcgctgaggc gcaggtacac cgtcccgatg accagc
//
LOCUS       DASQWN010000275         4672 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_47892, whole genome shotgun sequence.
ACCESSION   DASQWN010000275 DASQWN010000000
VERSION     DASQWN010000275.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 4672)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4672)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4672
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_47892"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(340..1227)
                     /locus_tag="VE686_05250"
     CDS             complement(340..1227)
                     /locus_tag="VE686_05250"
                     /EC_number="2.6.1.42"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003600719.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004084 - branched-chain-amino-acid
                     transaminase activity [Evidence IEA];
                     GO_process: GO:0009081 - branched-chain amino acid
                     metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid aminotransferase"
                     /protein_id="HYY83892.1"
                     /translation="MSATPFDQYDGWIWYDGKLVPWQDAKLHVLSHGLHYASAVFEGE
                     RAYGGEIFKSIEHAQRLRRSAELLDFEIPYSVAEIDAAKRLVLEKSGLKDAYLRPIAW
                     RGSEMMGVSAQTNTIHLAIACWEWPSYFDAAAKMKGIRLDMAEYRRPDPATAPSTSKA
                     AGLYMICTISKHKAERKGYADALMLDWQGRVAECTGANVFFIRDGAIHTPIADCFLSG
                     ITRQTVIELAKRRGFEVIERRIMPDELESFNECFITGSAAEVTPVSEIGPYRFQPGNM
                     TKVLMEDYSAEVQPKAKAA"
     gene            1428..1901
                     /locus_tag="VE686_05255"
     CDS             1428..1901
                     /locus_tag="VE686_05255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009494604.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family transcriptional regulator"
                     /protein_id="HYY83893.1"
                     /translation="MLEELPVYDLIELFFFAYRDFVSDPDRILEQYGFGRAHHRVLHF
                     VDRQPGLAIAELLDILRITKQSLNRVLKELIEKGFIESRTGTVDRRQRLLFTTDEGHE
                     LALKMAKVQTRRIMRALAEGPDDLKAAASRFLLAMIDASDRAHVRRLVFGPGTTA"
     gene            1898..2614
                     /locus_tag="VE686_05260"
     CDS             1898..2614
                     /locus_tag="VE686_05260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015951105.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HYY83894.1"
                     /translation="MTVPARVDIPDHAPHVLVVDDDRRLRDLLARFLGEHGYRVTTAA
                     SAAEARAKSESFVFDALVLDVMMPGESGFDFARRIRTDSRVPILMLTARADPADRVTG
                     LEIGADDYLPKPFEPRELILRLGNILRRAPEPATPPPSSAEPIRFGPFAFRLDRGELR
                     RDGEIIRITEREREILTILGHRPSHNVPREDLAGGGSAANERTVDVQINRLRRKIEVD
                     PANPMYLQTVRGVGYRLVVD"
     gene            2614..3984
                     /locus_tag="VE686_05265"
     CDS             2614..3984
                     /locus_tag="VE686_05265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014329094.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HYY83895.1"
                     /translation="MAPFAAIRKAPALAPFGSFARWLSSMMPKGLYARSLIIIIAPVV
                     LLQSVIAYVFMERHWQLVTRRLSASVAADVAALIDVYQSYPQEKEADTLSRIASERLG
                     LDLDIMPGTDLPPPGPRPFFGILDEALSEELQRRVARPFWIDTVGRSNLIELRVKLDN
                     NAVMRILARRSQAYASNSHIFLLWMGGSSLVLLGVAILFLRNQIRPILTLANAAESFG
                     KGREVEFRPRGAREVRQAGHAFIEMKRRIERAMEQRTAMLNGVSHDLRTILTRFRLSL
                     ALVEQTPEVDDLRRDVDEMTRMLEEYLAFARGDAGEQAVDTDLRSLLAELQADAERQG
                     HSTSVDIVGDPTVTVRPDAFRRLLFNLVSNAARHGDSMAILAHHEGRWLVVNVDDDGP
                     GIAPEHREEVFKPFVRLDEARNQDEGGSGLGLSIARDIARAHGGDVILGDSPLGGLRA
                     TVRLPA"
     gene            4292..>4672
                     /locus_tag="VE686_05270"
     CDS             4292..>4672
                     /locus_tag="VE686_05270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003598253.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF892 family protein"
                     /protein_id="HYY83896.1"
                     /translation="MGLFTKDIKTLDDLFVHGLQDIYYAEHQITKALPKMAAQATDPQ
                     LRQGFETHLRETEGQIRRLEQVFEMHGQKPKQVDCPTIDGLIKEANEIAGEVADKEVL
                     DAALLAAAQSVEHYEISRYGTLMAW"
BASE COUNT          733 a         1690 c         1508 g          741 t
ORIGIN      
        1 cctcggcgcg ctgagtcgcc gcaaagctcc agcaccggca gggggaaggg cagcccctca
       61 aacccgtcag cggagcttct ctgccggctt taggtcggat cccgcgagca caccctggca
      121 agaggggcga gtggcggcat gttcccggta tcgtccgtta tggtcggcat cttaccggac
      181 tcgtcggtta tgtcggcatc ttcccggatt ggtcgcgcgg ctgcccggcg ttttcccggc
      241 atcttccgca ttcggggccc ttatcgcccc tcctgtcagc gtcgacgacg aatccggcgt
      301 gggccggcgc gcaccggccc acgatgacgg acgggcgttt caggccgcct tcgccttcgg
      361 ctgcacctcg gccgagtagt cctccatgag caccttcgtc atgttgccgg gctggaagcg
      421 gtaggggccg atctccgaca ccggcgtcac ctcggcggcc gagccggtga tgaagcactc
      481 gttgaagctc tcgagctcgt ccggcatgat gcggcgctcg atgacctcga agccgcgccg
      541 cttggcaagc tcgatgacgg tctggcgcgt gatgccggag aggaagcagt cggcgatcgg
      601 cgtgtggatc gccccgtccc ggatgaagaa gacgttggcg ccggtgcact cggcgacacg
      661 gccctgccag tcgagcatga gcgcgtcggc gtagcccttg cgctccgcct tgtgcttcga
      721 gatcgtgcag atcatgtaca agccggctgc cttcgaggta gagggcgccg tcgccgggtc
      781 gggccggcgg tactcggcca tgtcgaggcg gatccccttc atcttggcgg cggcatcgaa
      841 atagctcggc cactcccagc aggcgatggc gaggtggatg gtgttggtct gcgccgagac
      901 gcccatcatc tccgatccgc gccaggcgat cgggcgcagg taggcgtcct tcaggccgct
      961 cttctcgagc acgaggcgct tggccgcgtc gatctcggcg accgaatagg gaatctcgaa
     1021 gtcgaggagc tcggccgagc ggcgcaggcg ctgcgcgtgc tcgatggact tgaagatctc
     1081 gccgccgtag gcgcgctcgc cctcgaagac cgcggaggca taatggagcc cgtggctcag
     1141 cacgtggagc ttggcgtcct gccacggcac gagcttgccg tcgtaccaga tccagccgtc
     1201 gtactggtcg aagggggtgg cagacatcga aggctccttt ggcgttcccg gcagcccgtt
     1261 tgggcggctc cggcgcgagg cgatccgagg ggatgcgcgc actttccttt cgcggcgaag
     1321 gcttgacgag taacaatagg gctgagatat gtcaacaacg ctgacttaaa agtccggagc
     1381 gccccgtgac ccaggccgtc gcccatcgtc gtgctccgag cgaggacgtg ctcgaggagc
     1441 tgccagtcta cgacctcatc gagctgttct tcttcgccta tcgcgacttc gtcagcgacc
     1501 cggaccgtat cctcgagcag tacggcttcg gccgggccca ccaccgcgtg ctgcatttcg
     1561 tcgaccgcca gcccggcctc gccatcgccg agctcctcga tatcctgcgc atcaccaagc
     1621 agagcttgaa ccgcgtgctc aaggagctga tcgagaaggg cttcatcgag agccgcaccg
     1681 ggaccgtcga ccggcgccag cgccttctct ttaccacaga cgaggggcac gaactcgcgc
     1741 tcaagatggc gaaagtgcag acgcggcgca tcatgcgagc cctggcggaa ggtcccgacg
     1801 atctgaaagc ggcggcgagc cgcttcctgc ttgccatgat cgacgcctcg gatcgcgccc
     1861 acgtgcgccg gctcgtcttc ggcccgggca ccacggcatg acggtccccg cccgggtcga
     1921 catccccgac cacgcgccgc acgtgctcgt ggtcgacgac gaccggcgcc tgcgcgacct
     1981 cctcgcccgc ttcctcggcg agcacggcta tcgggtgacg actgccgcga gcgcggcgga
     2041 ggcgcgcgcg aagagcgaga gcttcgtctt cgacgccctc gtgctcgatg tgatgatgcc
     2101 gggcgagagc gggttcgact tcgcccgccg catccgcacg gactcgcgcg tgccgatcct
     2161 catgctgacc gcccgcgccg acccggccga ccgcgtcacc ggcctcgaga tcggcgccga
     2221 cgactacctg ccgaagccgt tcgagccgcg cgagctgatc ctgcgcctcg gcaacatttt
     2281 gcggcgtgcc cccgagcctg caacccctcc cccctcgtcc gccgagccga tccgcttcgg
     2341 gccgttcgcc ttccggctcg accgcggtga gttacgccgg gacggcgaga tcatccgcat
     2401 caccgagcgc gagcgcgaga tcctgaccat cctcggccac cgcccgagcc acaacgtgcc
     2461 gcgcgaggac ctcgccgggg gaggctccgc cgccaacgag cgcaccgtcg acgtgcagat
     2521 caaccgactg cggcgcaaga tcgaagtcga tcccgcaaat ccgatgtacc tgcagacagt
     2581 taggggcgtc ggctaccgcc tcgtcgtgga ctgatggccc cgttcgccgc catccgcaag
     2641 gcgccggcgc tcgccccctt cggctccttc gcgcgctggc tgtcgagcat gatgcccaag
     2701 gggctttatg cgcgctccct aataatcatc atcgcgccgg tggtgctgct gcagtccgtc
     2761 atcgcgtacg tgttcatgga gcggcactgg cagctcgtga cgcggcggct gtcggcgtcg
     2821 gtcgcggccg acgtcgcggc gctcatcgac gtgtaccaga gctacccgca ggagaaggag
     2881 gccgacacct tgagccgcat cgcctccgag cggctcggcc tcgacctcga catcatgccc
     2941 ggcaccgacc tgccgccgcc cgggccgcgg ccgttcttcg gcatcctcga cgaggccctc
     3001 tcggaggagc tgcagcgccg cgtcgcgcgg ccgttctgga tcgacacggt cgggcgctcg
     3061 aacctcatcg agctgcgcgt caagctcgac aacaatgcgg tcatgcgcat cctcgcgagg
     3121 cggagccagg cctacgcctc gaactcgcac atcttcctgc tgtggatggg cggctcgtcc
     3181 ctcgtgctgc tcggggtcgc catcctgttc ctgcgcaacc agatccgccc tatcctgacc
     3241 ctcgccaacg ccgccgagag cttcggcaag gggcgcgagg tggagttccg cccccgcggc
     3301 gcccgcgagg tgcgccaggc cggccacgcc ttcatcgaga tgaagcgccg catcgagcgc
     3361 gccatggagc agcgcacggc gatgctcaac ggggtgagcc atgacctgcg caccatcctc
     3421 acgcgcttcc ggctctcgct cgccctggtc gagcagacgc cggaggtcga cgacttgcgc
     3481 cgcgacgtcg acgagatgac gcgcatgctc gaggagtacc tcgccttcgc gcggggcgac
     3541 gccggcgagc aggccgtcga caccgacctg cgctcgctcc tcgccgagct ccaggccgac
     3601 gccgagcgcc agggtcactc gacctccgtc gacatcgtcg gcgaccccac cgtgacggtc
     3661 cgccccgacg ccttccggcg gctcctgttc aacctcgtct ccaacgccgc ccgccacggc
     3721 gacagcatgg cgatcttggc ccatcacgag gggcgctggc tcgtcgtcaa cgtcgacgac
     3781 gacggccccg gcatcgcgcc cgagcaccgc gaggaggtgt tcaagccctt cgtgcggctc
     3841 gacgaagcgc gcaaccagga cgaaggcggc tcggggctcg gcctgtccat cgcccgcgac
     3901 atcgcccgcg cccacggcgg cgacgtgatc ctcggcgaca gccccctcgg cggcctgcgc
     3961 gcgacggtgc ggctgcccgc ctgagggtcg aaaacgctcc gaatcacgtg cgcatcttca
     4021 tgatcgccgc tggaaaaaag cgtgtccgat cagcgcaacg ccgtcatgat gacgcaccat
     4081 cgtcatggtg cacgtgaggc gctccggcta gccggcggcg ccccttcggc aagcctcggc
     4141 cgcactcctt gaagctcccg cgcggcctcc gctctcccgc ttccggagaa cgatccgaag
     4201 cctgccgcgt tctcctcatg tcaggggccg gcgcggcctt cacgaacgcg ccgccggctg
     4261 caccaaccca cacgagcatc ggagcaccgc catgggcctc ttcaccaagg acatcaagac
     4321 gctcgacgat ctcttcgtcc acggcctgca ggacatctat tacgccgagc accagatcac
     4381 gaaggccctc ccgaagatgg ccgcccaggc caccgatccg cagctgcgcc agggcttcga
     4441 gacccacctg cgcgagaccg aggggcagat ccgccggctc gagcaggtct tcgagatgca
     4501 cggccagaag ccgaagcagg tcgactgccc gaccatcgac ggcctgatca aggaggcgaa
     4561 cgagatcgcc ggcgaggtcg ccgacaagga ggtcctcgac gctgcgcttc tcgccgccgc
     4621 gcagtcggtc gagcactatg agatctcgcg ctacggcacc ctcatggcgt gg
//
LOCUS       DASQWN010000276         2571 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_519079, whole genome shotgun sequence.
ACCESSION   DASQWN010000276 DASQWN010000000
VERSION     DASQWN010000276.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2571)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2571)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2571
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_519079"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..334
                     /locus_tag="VE686_05275"
     CDS             <1..334
                     /locus_tag="VE686_05275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013893077.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016627 - oxidoreductase activity, acting
                     on the CH-CH group of donors [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase family protein"
                     /protein_id="HYY83897.1"
                     /translation="GANYDIIAECRMEIEQARLLCLKAAYMMDTASRREAAPWISQIK
                     GVAPRMALKVIDEAVQMYGAQGISQDTPLARMWTSVRTLRLADGPDAVHRRQVARTEL
                     KRYTNERP"
     gene            331..1116
                     /locus_tag="VE686_05280"
     CDS             331..1116
                     /locus_tag="VE686_05280"
                     /EC_number="1.1.1.47"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009467769.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glucose 1-dehydrogenase"
                     /protein_id="HYY83898.1"
                     /translation="MSAVPQRRYDGAAVLITGAASGFGRLAAERFAQEGARLVLGDIS
                     ERGLEATAALVRDHGAEVTARVTDVAKPDDAEALVRASVSAYGGLDVALNNAGIGHGS
                     AKLPDIPLDEMRRVIEVDLVGVFLAMKYQLPVMERQGRGAILNVASAAGVTGAPLMSA
                     YAAAKHGVVGLTKSAAGEYARKGVRINAICPSFAGTPMVTGMLGQMRGGEQEATARLL
                     SAVPMRRIAEPEEIVQAMLWICSPQNSFMTGHSLVLDGGLTAL"
     gene            complement(1133..2149)
                     /locus_tag="VE686_05285"
     CDS             complement(1133..2149)
                     /locus_tag="VE686_05285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003603580.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADP-dependent oxidoreductase"
                     /protein_id="HYY83899.1"
                     /translation="MTQQNRRIVLASRPEGEPVPENFRLDAAAVPQPGPDEVLLRTRY
                     LSLDPYMRGRMSAARSYAKPVEPGDVMVGGTVSEVVASNVEGLAPGDVVLGQMGWQEY
                     AVSKRQGLRKLDPAAAPIQTALGVLGMPGMTAYTGLLNIGQPKEGETVVVAAATGPVG
                     SLVGQIARLKGCRAVGIAGGADKCRALIDEFGFDAAVDHRSPEMAARLKEACPKGIDV
                     YFENVGGAVWDAVFPLLNDFSRIPVCGLVAQYNMTELPPGPDRTPVLMRAILSKRLLL
                     RGFIVSDFASQHGEFQREVGAWLRDGKIKYREDVVEGLENAPQAFIGLLQGKNFGKLL
                     IKVS"
     gene            2275..2430
                     /locus_tag="VE686_05290"
     CDS             2275..2430
                     /locus_tag="VE686_05290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012330863.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY83900.1"
                     /translation="MTAIAINETGDPAPVHLGTAPERRHSLAAAAVGFLSSTAALTAL
                     MVLLSHS"
BASE COUNT          382 a          944 c          876 g          369 t
ORIGIN      
        1 cggcgccaac tacgacatca tcgccgagtg ccgcatggag atcgagcagg cgcgcctgct
       61 ctgcctcaag gcggcctaca tgatggacac ggcgagccgg cgcgaggcgg cgccctggat
      121 ctcgcagatc aagggcgtcg cgccccgcat ggccctcaag gtcatcgacg aggcggtgca
      181 gatgtacggc gcgcagggga tcagccagga cacgccgctt gcccgcatgt ggacgagcgt
      241 gcgcacgctc cgcctcgccg acgggcccga cgccgtgcac cggcgccagg tcgcccgcac
      301 ggagctcaag cgctacacca acgagcggcc gtgagcgccg tgccgcagcg gcgctacgac
      361 ggcgctgccg tcctcatcac cggggcggcc agcggcttcg gccgcctcgc cgccgagcgc
      421 ttcgcccaag agggcgcgcg tctcgtcctc ggcgacatct cggagcgcgg gctcgaggca
      481 accgccgctc tcgttcgcga ccacggcgcg gaggtgacgg cgcgcgtcac cgacgtggcg
      541 aagcccgacg acgcggaggc gctcgtccgc gcgagcgtgt cggcctacgg cggcctcgac
      601 gtggcgctca acaacgccgg catcgggcac ggctcggcca agctccccga tatcccgctc
      661 gacgagatgc ggcgcgtcat cgaggtcgac ctcgtcggcg tgttcctggc catgaagtac
      721 cagctgcccg tcatggagcg gcagggcagg ggagccatcc tcaacgtcgc ctcggcggcg
      781 ggcgtcaccg gcgcgccgct catgtcggcc tatgcggccg cgaagcacgg cgtcgtcggc
      841 ctcacgaaga gcgccgccgg cgagtacgcg cgaaaaggcg tgcgcatcaa cgccatctgt
      901 ccgtcgttcg ccggcacgcc catggtgacc ggcatgctcg gccagatgcg cggcggcgaa
      961 caggaagcca cggcgcgcct cctcagcgcc gtccccatgc gccgcatcgc cgagccggag
     1021 gagatcgtgc aggccatgct gtggatctgc tccccgcaga acagcttcat gaccggccac
     1081 tcgctggtgc tggacggggg gctgacggcg ttgtgacgcc gccgcgcgcc ggtcagctca
     1141 ccttgatgag cagcttgccg aagttcttgc cctggaggag gccgatgaag gcctgcgggg
     1201 cgttctcgag gccttcgacc acgtcctccc gatacttgat cttgccgtcg cgcagccatg
     1261 cgccgacctc gcgctggaac tcgccgtgct ggctcgcaaa gtccgacacg atgaagccgc
     1321 gcaacagcag gcgcttcgac aggatggcgc gcatcagcac gggcgtgcgg tccggcccgg
     1381 gaggaagttc ggtcatgttg tactgcgcga cgagcccgca gacggggatg cgtgagaagt
     1441 cgttgaggag cgggaacacg gcatcccaga cggcgccccc gacgttctcg aagtagacgt
     1501 cgatcccctt cgggcacgcc tccttcaggc gggcggccat ctcgggggag cggtggtcga
     1561 cggcggcgtc gaagccgaac tcgtcgatga gcgcgcggca cttgtcggcc ccgcccgcga
     1621 tgcccacggc gcggcaccct ttgagcctgg caatctgccc gacgagggag cccacggggc
     1681 cggtcgcggc cgccacgacg acggtctcgc cttccttcgg ctggccgatg ttgaggaggc
     1741 ccgtgtaggc ggtcatgccg ggcatgccga gcaccccgag ggcggtctgg atcggcgccg
     1801 ccgccggatc gagcttgcgc aggccctgcc gcttcgacac ggcgtactcc tgccaaccca
     1861 tctggccgag caccacgtcg ccgggcgcga gcccctccac gttcgaggct accacctcgc
     1921 tcacggtgcc gccgaccatg acgtcgcccg gctcaacggg cttggcgtag gagcgcgccg
     1981 cgctcatgcg gccgcgcatg taggggtcga gggagaggta gcgcgtcctg aggaggactt
     2041 cgtcagggcc cggctgcggc accgccgcgg cgtcgagacg gaagttctca gggaccggct
     2101 cgccctccgg ccgcgacgcc agcacgatgc ggcggttctg ctgcgtcatc tctcgtcctc
     2161 cgttgggtca cggccctgcc ggcttagcgc gcctgcgctg aaacacgata gctcggccgt
     2221 gaaatgtttt cgaaacatgg tcccggtaca tccctcataa cgaaagggaa cgccatgacc
     2281 gccatcgcca tcaacgagac gggcgacccc gcgccggtcc atctcggcac cgcccccgag
     2341 cggcgccact cgcttgccgc cgccgccgtc ggtttcctgt cctcgaccgc cgcgctcacc
     2401 gcgctgatgg tcctcctgag ccattcctga cgaggccgcc atgcgccccg ccctgttcta
     2461 tatctcagga gcgttgctcc gcagcggtcc gtcggcccgc gaggccgaag ccctgcgcca
     2521 ggcccgcctc gccgagatcc gctccctcat cgccgacatc gccgcgcagc c
//
LOCUS       DASQWN010000277         3463 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_742282, whole genome shotgun sequence.
ACCESSION   DASQWN010000277 DASQWN010000000
VERSION     DASQWN010000277.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 3463)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3463)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3463
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_742282"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            196..393
                     /locus_tag="VE686_05295"
     CDS             196..393
                     /locus_tag="VE686_05295"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY83901.1"
                     /translation="MVATAKTTARHLHLVRAAQSAGEAFACPLTDDGAPTRWLSARIG
                     ATPFVWLAAGGVAAAALSLVF"
     gene            complement(581..3262)
                     /gene="topA"
                     /locus_tag="VE686_05300"
     CDS             complement(581..3262)
                     /gene="topA"
                     /locus_tag="VE686_05300"
                     /EC_number="5.6.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020095334.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003917 - DNA topoisomerase type I (single
                     strand cut, ATP-independent) activity [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA];
                     GO_process: GO:0006265 - DNA topological change [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type I DNA topoisomerase"
                     /protein_id="HYY83902.1"
                     /translation="MKVLVVESPAKAKTINKYLGNGYEVLASFGHIRDLPAKDGSVDP
                     EQDFRMIWVLDERGGKRLSDIARALKGAEKLILATDPDREGEAISWHVVEALNEKRAL
                     KGMPVERVTFNAITKDSVQAALRAPREIDQALVDAYMARRALDYLVGFNLSPVLWRKL
                     PGARSAGRVQSVALRLVCDRELEIETFVTREYWSLVATLATREGAVFEARVVGADGTK
                     ITRLDIGRGDEAEAFKRDLELATFTVAQVESKPAKRHPSPPFTTSTLQQEASRKLGLA
                     PAQTMRVAQRLYEGVEIGGETVGLITYMRTDGVDMAPEAIADARRVIGREYGARYLPG
                     APRKYTTKAKNAQEAHEAIRPTDMGRLPADVKRYLEPEQARLYELVWIRTIASQMESA
                     ELERTTVDIAASVGPRKLELRANGQVVKFDGFLTLYQEGRDDEADEDEGRLPPMSAGD
                     PLERRRIAATQHFTEPPPRYSEASLVKRMEELGIGRPSTYAAVLATLRDREYVRIDKK
                     KLVPEDKGRIVTAFLESFFRRYVEYDFTANLEEQLDRVAEHEVDWKQVLRDFWRDFSA
                     AIGDTKELRTTEVLDALNELLGPHIFPAKADGGDPRACPNCGAGQLSLKLGKFGAFVG
                     CSNYPECKFTRQFQAAAEGEGETAGDPGTPGVRLLGNDPETGLPVTIRDGRFGTFVQL
                     GEAEEGSKPKRSSLPPGTVSNDVDLETALKLLALPRPVATHPESGEPILVGIGRYGPY
                     VQHGKTYANLERDDDVLTVGGNRAIDLIVAKETGGNRFRRGNADPGRALGEDPASGKT
                     VVVKGGRFGPYVTDGEINATLPKAVTQEAVTLDEALALIAARRASGATGKKGRFKKAG
                     AAKKTAAKKSPAKKAAAKKSSAKKAPAKKPAAKRAAG"
BASE COUNT          470 a         1160 c         1247 g          586 t
ORIGIN      
        1 agaaacggca atgcggtcgc gtgccgcgca ccggcgtttt cccaggccgc ttccctgcgc
       61 cgcctaaacc ggccggcccc gggtcgcaag catgtgcaac gaagggctaa tgccccatgg
      121 cccagctaca aaggaacctt catcgatcct tcaagttgac gcgatactct ctccggcatg
      181 gaaggacgcc agcccatggt cgctactgcc aagaccaccg cccggcacct ccatctcgtg
      241 cgcgcggcgc agtcggccgg agaggccttt gcgtgccccc tcacagatga cggggcccca
      301 acccgctggc tcagcgcccg catcggagca acccccttcg tctggctcgc cgccggcggt
      361 gtcgcggccg ccgccctgtc cctggtcttc taaagcgcgc cttcttccga cgcgagaggg
      421 cggcctcggg cccgaggccg aggcgtgtga ggggcgagga gcccgggtgc tggccggcgg
      481 ttgcggcacc tcgcgaaggc ctgagacagc acgccgccca tcctaccgct tcgcggccgc
      541 cctcttcccg tctcccgcaa gggcgaggct gtggggggtc tcagcctgcg gcgcgtttcg
      601 cggcgggctt ctttgcaggg gctttcttgg ccgagctctt ctttgccgct gctttcttcg
      661 ccggactctt tttcgcggcg gtcttcttcg cagcaccagc cttcttgaag cgccccttct
      721 tgccggtggc gccactggca cgccgggcgg cgataagggc gagggcctcg tcgagggtga
      781 cggcttcctg ggtcacggcc ttgggcaggg tggcgttgat ctcgccgtcc gtgacgtagg
      841 ggccgaagcg gccgcctttc accacgacgg tcttgccgct tgccgggtct tcgccgagcg
      901 cccggcccgg gtcggcgtta ccgcggcgga agcggttgcc gcccgtctcc ttggcgacga
      961 tgaggtcgat ggcgcggttg ccgccgacgg tgagcacatc gtcgtcgcgc tcgaggttgg
     1021 cgtaggtctt gccgtgctgg acgtaaggtc cgtagcggcc gatgccgacg aggatcggct
     1081 cgccgctctc cgggtgcgtt gcgacagggc ggggcagggc gaggagcttc agcgccgtct
     1141 cgaggtcgac gtcgttcgac accgtgccgg gcggcagcga cgagcgcttg ggcttcgagc
     1201 cttcctcggc ctcgccgagc tggacgaagg tgccgaagcg cccgtcgcgg atcgtcaccg
     1261 gcaggccggt ctcgggatcg ttgccgagga ggcgcacgcc cggtgtgccg ggatccccgg
     1321 cggtctcgcc ctcgccctcg gcggccgctt ggaactggcg ggtgaacttg cattccgggt
     1381 agttcgagca gccgacgaag gcgccgaact tgccgagctt cagggacagc tggccggcgc
     1441 cgcagttggg gcaggcgcgg ggatcgccgc cgtccgcctt ggcggggaag atgtgcggcc
     1501 cgagaagctc gttgagcgca tcgagcacct cggtggtgcg cagttccttg gtgtcgccga
     1561 tggcggccga gaaatcgcgc cagaagtcgc gcaggacctg cttccagtcg acctcgtgct
     1621 cggccacgcg gtcgagctgc tcctccaggt tcgccgtgaa atcgtactct acgtagcggc
     1681 ggaagaagct ctcgaggaac gccgtgacga tgcggccctt gtcctcgggc acgagcttct
     1741 tcttgtcgat gcgcacgtac tcgcggtcgc gcaacgtcgc gaggacggcc gcataggtcg
     1801 acggacgccc gatgccgagc tcttccatgc gcttgaccag gctcgcctcg gagtagcgcg
     1861 gcggtggctc ggtgaagtgc tgggtcgcgg cgatccggcg gcgctcgagg gggtcgccgg
     1921 cggacatggg cggcaggcgg ccctcgtcct cgtcggcctc gtcgtcgcgg ccctcctggt
     1981 agagggtgag aaagccgtcg aacttgacca cctggccgtt ggcgcgcagc tcgagcttgc
     2041 gcgggccgac gctcgcggcg atgtcgacgg tcgtccgctc gagctcggcc gattccatct
     2101 ggctcgcaat ggtgcggatc cagacgagct cgtagaggcg cgcctgctcg ggctcgagat
     2161 agcgcttcac gtctgcgggc aagcggccca tgtcggtcgg gcggatcgcc tcgtgggctt
     2221 cctgcgcgtt cttggccttg gtcgtatact tgcgcggcgc gccgggcagg tagcgcgcgc
     2281 cgtactcgcg gccgatgacg cggcgcgcgt cggcgatggc ctcgggggcc atgtcgacgc
     2341 cgtccgtccg catgtaggtg atgaggccga cggtctcgcc gccgatctcg acgccctcgt
     2401 agaggcgctg cgcgacacgc atggtctgcg ccggggcgag cccgagcttg cgcgaggcct
     2461 cctgctgcag ggtcgaggtg gtgaagggcg gggaggggtg gcgcttcgcc ggcttcgatt
     2521 cgacctgcgc gaccgtgaac gtcgcaagct cgaggtcgcg cttgaaggct tcggcctcgt
     2581 caccccggcc gatgtcgagg cgcgtgatct tggtgccgtc ggcgccgacg acgcgggcct
     2641 cgaacaccgc gccttcgcgg gtggccaagg tcgccacgag ggaccagtac tcgcgggtga
     2701 cgaaggtctc gatctcgagc tcgcggtcgc acacgaggcg aagcgcgacc gattgcaccc
     2761 ggccggccga gcgcgcgccc ggcagcttgc gccacagcac gggcgagaga ttgaagccga
     2821 cgaggtagtc gagcgcgcgc cgcgccatgt aggcgtcgac gagggcctgg tcgatctcgc
     2881 gcggcgcgcg cagcgccgcc tgcaccgagt ccttggtgat ggcgttgaag gtgacgcgct
     2941 cgaccggcat gcccttgagg gcacgcttct cgttgagcgc ctcgacgacg tgccacgaga
     3001 tggcctcgcc ctcgcggtcg gggtcggtcg cgagaatcag cttctcggcg cccttgaggg
     3061 cccgggcgat gtcggacagg cgcttgccgc cgcgctcgtc gagcacccag atcatccgaa
     3121 aatcctgctc cggatcgacg gagccgtcct tcgccggcag gtcccggata tggccgaacg
     3181 aggccaggac ctcgtagccg ttgccgagat atttgttgat cgtcttcgcc tttgcgggcg
     3241 actcgacgac gagaaccttc atggggagac gacccctcgc gaatgggcgg tcagaacgca
     3301 aaaaagaatg ggagcggcgc cgagccccag ggcggccgcg gcccgtttaa gtgggtgaac
     3361 gaagccggga agtcaaatca gcgcctccgc cgcgcagtgc gcagcaggat gtccggatgg
     3421 ccgtcctcaa caggattgcc tcttcgcggc gggccaccgc gct
//
LOCUS       DASQWN010000278         3018 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1039942, whole genome shotgun sequence.
ACCESSION   DASQWN010000278 DASQWN010000000
VERSION     DASQWN010000278.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 3018)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3018)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3018
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1039942"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..268
                     /locus_tag="VE686_05305"
     CDS             <1..268
                     /locus_tag="VE686_05305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019401467.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hydrolase"
                     /protein_id="HYY83903.1"
                     /translation="KRLLAAIHVRFGLPALTPAALNRLTKRADAVAAFLEATRLAGFS
                     REEALRIFGRPVPLPREVEVLLAPWSAAEAESRYRDRVLALAPA"
     gene            347..604
                     /locus_tag="VE686_05310"
     CDS             347..604
                     /locus_tag="VE686_05310"
                     /EC_number="3.1.11.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020176593.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008855 - exodeoxyribonuclease VII
                     activity [Evidence IEA];
                     GO_process: GO:0006308 - DNA catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease VII small subunit"
                     /protein_id="HYY83904.1"
                     /translation="MTSGAEPTDLSVLPFEKALAELEDIVRRLERGDVPLEDSIAIYE
                     RGEALKKHCEGLLKRAEARIEKITIGRDGQASGVTPLDVES"
     gene            742..2655
                     /gene="dxs"
                     /locus_tag="VE686_05315"
     CDS             742..2655
                     /gene="dxs"
                     /locus_tag="VE686_05315"
                     /EC_number="2.2.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019401461.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0008661 - 1-deoxy-D-xylulose-5-phosphate
                     synthase activity [Evidence IEA];
                     GO_process: GO:0008615 - pyridoxine biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0009228 - thiamine biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0009240 - isopentenyl diphosphate
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="1-deoxy-D-xylulose-5-phosphate synthase"
                     /protein_id="HYY83905.1"
                     /translation="MPGTTPLLDGIRTPDDLRRIPESELHKVAQELRAETIDAVSVTG
                     GHLGAGLGVVELTVALHYVFDTPRDRLIWDVGHQAYPHKILTGRRDRIRTLRKAGGLS
                     GFTKRAESEYDPFGAAHSSTSISAGLGMAVARDLAGQANNVIAVIGDGAMSAGMAYGA
                     MNNAGAMHSRLIVILNDNDMSIAPPVGAMSAYLSRLLSGRSYLSLRDMGKQLTKRLPK
                     SLDRAITRAVEHARGYMTGGTLFEELGFYYVGPIDGHNLDHLLPLLKNVRDAGIGPIL
                     VHVVTQKGKGYAPAENSADKYHGVVSFDVVTGAQAKAKANAPAYTKVFAESLAKEARR
                     DDRIVAITAAMPSGTGLDAFAKEFPARTFDVGIAEQHAVTFAAGLATEGYKPFCAIYS
                     TFLQRAYDQVVHDVAIQKLPVRFALDRAGLVGADGPTHAGAFDVAYLGCLPDMVVMAA
                     ADEAELVHMVATAAAYDDGPIAFRYPRGEGVGVEMPEFGVPLPIGRGRIVREGDRIAI
                     LSLGTRLAEALKAAEDLQARGLSSTVADARFAKPIDEELVLRLAREHEVLITIEEGSI
                     GGFGAHVLQLLAERGVLDSGLKVRTMVLPDRFLDQDSTERMYAEAGLDAAAIVAKAFE
                     ALGRDAAALRVRA"
     gene            complement(2700..>3018)
                     /locus_tag="VE686_05320"
     CDS             complement(2700..>3018)
                     /locus_tag="VE686_05320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003607160.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006801 - superoxide metabolic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="superoxide dismutase family protein"
                     /protein_id="HYY83906.1"
                     /translation="GLHFHAVGDCSDTGQFQLSKGHVNHDSSKHGLLNPEGPDDGDLP
                     NIYANADGSANAEVVTDLALSGERGLRDADGSALVIHASEDDHSTQPIGNAGARVGCA
                     VIK"
BASE COUNT          463 a         1080 c         1010 g          465 t
ORIGIN      
        1 gaagcggctg ctcgcggcga tccacgtccg cttcgggctg ccggcgctca cccccgcggc
       61 cctgaaccgg ctgactaaac gcgccgatgc cgtcgccgcc tttctggaag cgacacgcct
      121 cgccggtttc tcccgcgagg aggcgctgag gatctttggc cgccccgtgc cgctgccccg
      181 cgaggtggag gtcctgctcg cgccctggtc ggccgccgag gcggaatcgc ggtacaggga
      241 ccgggtactg gcgctcgctc ccgcttgaga tgaggcggtc tgccgtcgct tgtcaggtcc
      301 gagtcccgcg cccataacgc cgacgacccg cttgaggaga ctgcccgtga ccagcggtgc
      361 cgaaccgacc gacctctccg tcctgccatt cgagaaggcc ttggccgagc tcgaggacat
      421 cgtgcggcgc ctcgagcgcg gcgacgtccc acttgaggac tcgattgcta tctacgagcg
      481 cggcgaagcc ctgaagaagc actgcgaggg cctgctcaag cgggccgagg cccgaatcga
      541 gaagatcacc atcggccgcg acggacaggc ttcgggtgtg acgcccctcg acgtcgagag
      601 ctgacccgcc gggcgcacgc cgacagcccg gccttgcttc acaaaggtgg gcgttcctgc
      661 cgctttgacc ccagcgctcc gacgccctat ctcgtaacag ggccgaaccg cgcctcgacc
      721 agccgcgaca aggacaagct tttgccgggt accacacccc tgctcgatgg aatccgcact
      781 cccgacgacc tgcgccggat tcccgagagc gagctgcata aggtcgcgca ggagcttcgc
      841 gccgagacga tcgatgccgt ctcggtcacg ggcgggcatc tcggcgcggg gctcggcgtg
      901 gtcgagctga cggtcgcctt gcactacgtc ttcgacacgc cgcgggaccg gctcatctgg
      961 gacgtcggcc accaggccta cccgcacaag attctgaccg gccgccggga ccgcatccgg
     1021 accctgcgca aggccggcgg gctgtcaggc ttcacgaagc gcgcggagag cgagtacgac
     1081 cccttcgggg cggcgcattc ctcgacctcg atctcggccg gccttggcat ggcggtggcc
     1141 cgcgatcttg cgggccaggc gaacaatgtg atcgcggtga tcggcgacgg ggccatgtcg
     1201 gccggcatgg cttacggggc catgaacaac gccggcgcca tgcattcgcg cctcatcgtc
     1261 atcctcaacg acaacgatat gtccatcgcc cccccggtgg gcgcgatgtc ggcctatctc
     1321 tcgcggctcc tgtcgggccg cagctacctg tccctgcgcg acatgggtaa gcagctgacg
     1381 aagcggctgc cgaagagcct cgaccgggcc atcacccgcg ccgtcgagca cgcccgcggc
     1441 tacatgaccg gcggcacgct gttcgaggag ctcggcttct actacgtggg cccgatcgac
     1501 gggcacaacc tcgatcacct cctgccgctt ctgaagaacg tgcgcgacgc tggcatcggg
     1561 ccgatcctcg tccacgtggt cacccagaag ggcaagggct acgccccggc cgagaactcg
     1621 gccgacaagt accacggcgt ggtcagcttc gacgtggtca ccggcgccca ggccaaggcc
     1681 aaggcgaacg cacccgccta caccaaggtg ttcgccgaaa gcctcgccaa ggaagcgcgc
     1741 cgcgacgaca ggatcgtcgc catcacggcg gccatgccgt ccggcacggg tctcgacgcc
     1801 ttcgccaagg aattcccggc ccgcaccttc gacgtcggca tcgctgaaca gcacgccgtg
     1861 accttcgcgg ccggcctcgc gacagagggc tacaagccgt tctgcgccat ctactcgaca
     1921 ttcctgcagc gcgcctacga tcaggtcgtg cacgatgtcg ccattcagaa gctgccggtc
     1981 cgcttcgccc tcgatcgcgc cgggctcgtc ggtgccgacg ggccgacgca cgccggcgct
     2041 ttcgacgtcg cctatctcgg ctgcctcccc gacatggtgg tgatggcggc cgccgacgag
     2101 gccgagctcg tgcacatggt ggcaacggcc gccgcctacg acgatggccc catcgcgttc
     2161 cgctaccccc gcggcgaagg cgtcggcgtc gagatgcccg aattcggcgt gccgctgccc
     2221 atcgggaggg gccgcatcgt gcgcgaaggt gaccgcattg ccatcctgtc gctcgggacc
     2281 cgcctcgccg aagcgctgaa ggccgcggag gacctgcagg cgcgggggct gtcgagcact
     2341 gtcgccgacg cgcgcttcgc caagccgatc gacgaggagc tggtgctgcg tctcgcccgc
     2401 gagcacgagg tcctgatcac catcgaggag ggctcaatcg gcggcttcgg agctcacgtg
     2461 ctgcagctcc ttgccgagcg cggcgtgctc gactcaggcc tcaaggtccg gaccatggtc
     2521 ctgcccgacc gcttcctcga ccaggactcc accgagcgga tgtatgccga ggccggcctc
     2581 gacgccgccg ccatcgtcgc caaggccttc gaagccctcg ggcgggacgc ggcggcgctc
     2641 agggtccgcg cgtagacgga ccctcccccg cattgcgggg gaggatctcg agccttgtgc
     2701 tacttgatca ccgcgcagcc gacccgggcg ccggcgttgc cgatgggctg ggtcgagtgg
     2761 tcgtcctcgc tggcgtggat cacgagggcc gagccgtccg cgtcgcgcag gccgcgctcg
     2821 ccggacaggg ccaagtcggt gacgacctcg gcgttcgcgg agccgtcggc attggcgtag
     2881 atgttcggca ggtcgccgtc atccggacct tcggggttga ggagcccgtg cttgctcgag
     2941 tcgtgattga cgtggccctt ggagagctgg aactggccgg tgtcggagca gtcgccgacc
     3001 gcatggaagt ggagaccg
//
LOCUS       DASQWN010000279         4251 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_817047, whole genome shotgun sequence.
ACCESSION   DASQWN010000279 DASQWN010000000
VERSION     DASQWN010000279.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 4251)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4251)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4251
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_817047"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            398..1396
                     /locus_tag="VE686_05325"
     CDS             398..1396
                     /locus_tag="VE686_05325"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY83907.1"
                     /translation="MPRCGWLLLVVVLGLALAPPAQGASIVFVKKNDVWAARADGSRQ
                     VRVTRDGTRAHPYFSPTIADNGTIVALRGVFLHSFRANGGRIVKPRQWAIDPTPSLST
                     EPLDLDLSPNGRLVATDNALYSTYYDPDVSEDRPDLKARFVDFADFRRNKVIGDTDTY
                     YDYGSPAWIDSKRVVVSSYGGYNAQVLQVVVGRKSRGTPFYWDPGRDPVTNMNTIQLA
                     DPELTRRGDKLAVMRRPVLGADADDPTVASIQIYRVANPPSASTPLCEIGPGRRIGQA
                     PDPSWSPDGRTLYWWELGRGLFSTRVTSAPGCALKPKRLIRGAHSPDLSRATVHRR"
     gene            complement(1627..2997)
                     /locus_tag="VE686_05330"
     CDS             complement(1627..2997)
                     /locus_tag="VE686_05330"
                     /EC_number="1.6.5.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017980843.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HYY83908.1"
                     /translation="MQRTSAMSATSGTAAHRHRVVVIGGGFAGLQAAQHLATAPVELT
                     IVDRRNFHLFQPLTYQVATGALSPGEVAYPLRGVFRRHRNVRVLMAEVTGFDLDSRQV
                     HHAEGSLPYDTLIVAGGSHYSYFGHDDWRRYAPEVKSLESALATRARILSAFEDAETE
                     PDPDRRRALLTFVVVGAGPTGVEMAGQIAELARGTLRGEFRSIDSAESQVLLIETADR
                     VLTAFPPSLSRKAARSLESLGVTLLLERTVVAIDEDAVTVAAPDGGTARIPARNAIWA
                     AGVEASRLASQLGELSGADVDRAGRVTVEPDLTLPGHPEVLALGDMVRVRSRDGGVQE
                     LLGVAPVAMQQGRYAAKLVRARLSGRPIEAFHYLDKGNLATIGRARAVADLHLIRLSG
                     FAAWAAWLVVHIFYLVGFQNRLIVLIRWFISFATRGRGARLITNTSDGEDDRERQGDG
                     VARVTV"
     gene            complement(3360..3587)
                     /locus_tag="VE686_05335"
     CDS             complement(3360..3587)
                     /locus_tag="VE686_05335"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY83909.1"
                     /translation="MNPADAQHASGARARRLIRRDPGASLITLAAFLAFVLSVVLWFT
                     DSRQEALFTGLWVPSILALGGFYAALRRHST"
     gene            complement(3595..>4251)
                     /locus_tag="VE686_05340"
     CDS             complement(3595..>4251)
                     /locus_tag="VE686_05340"
                     /inference="COORDINATES: protein motif:HMM:NF019948.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1722 domain-containing protein"
                     /protein_id="HYY83910.1"
                     /translation="DAMPTLAIEEEGRLNDPGLREHFADRVFAHARVRDFFAGRWTAE
                     SLIRFHSAEKAAVLAHDAESARRLGRLVAGQGRLQPELLARSYRELHGVAFARPATPG
                     RQANALMHLAGHLKGALGSCDRQELREAIEDYRVGLVPVAVPLALLSRHLRAAGTEWA
                     RSQTYLQPYPKELGLRGLISKPRGGRRAARTERPPAFELEPTGSGEVAKSDVVKISGG
                     "
BASE COUNT          686 a         1405 c         1496 g          664 t
ORIGIN      
        1 tgtacccgat ctctcgcgcg tggggccaga actgtcatat gcgcgtgttt cggggcccac
       61 actcgcgcag cgcgcgtcga gcaggcaccc atttccgctt tcgcgcgaaa gtggtcattt
      121 cggattccaa ctcgacgccc cgatgtggaa gcgctgtgga agcggcgaac cgcagcagca
      181 cgcagcagct atggcggaac atcgctcgcc gagcgcctga gcgataggcg accgaatcgg
      241 agcttcgcgt cctcccgggg gcatggctag ccggtccctc acctaaccgg tcgatgggtc
      301 gtgggcgtcc gcgtcgaggc tccgggctgg cggtccttgc accatttggg tttgctggcc
      361 attgacgggg gatgtccgag cacattaggg tcgccacatg ccgcgctgcg gctggctact
      421 cctggtcgtc gtccttggac ttgcgctggc cccgcctgcg cagggcgcct caatcgtctt
      481 cgtcaagaag aacgatgtct gggctgcacg ggcggatggg tcgcgccagg ttcgggttac
      541 gcgggacggc acgcgcgcgc acccgtactt ctcgccgacc attgcggaca acgggacgat
      601 cgtcgccctc aggggcgtct tcttgcattc gttccgtgcg aacggaggcc ggatcgtcaa
      661 gccgcgccag tgggcgatcg atccgacgcc gagtctgtca accgagcctc tcgatctgga
      721 tctctcgccc aatggtcgcc tcgtggcgac cgacaatgcg ctctattcca cctactacga
      781 ccctgacgtt tcagaggacc gtccggatct caaggctcga tttgtggact tcgccgactt
      841 ccggcggaac aaggtgatcg gggacacgga cacgtactac gactacggaa gcccggcttg
      901 gatcgactcc aagcgggtgg tcgtcagcag ctacgggggc tacaacgccc aagtcctgca
      961 agtcgtggtc gggaggaaga gccggggcac gccgttctac tgggatccag gccgcgaccc
     1021 cgtgacgaac atgaacacca tccagctcgc ggatccggag ctgacccgcc gcggcgacaa
     1081 gctggcggtg atgcgccggc ccgtattggg agccgacgcc gacgatccca cggtcgcatc
     1141 gattcagatc taccgggttg caaacccacc atccgcgtcc acgccgctgt gcgagattgg
     1201 cccaggccga aggatcgggc aggctcccga tccctcgtgg tccccggacg gaaggaccct
     1261 ctactggtgg gagcttggcc gagggctctt ctcgacgcga gtcacgtcgg ccccagggtg
     1321 cgcgctcaag ccgaaacggc tcatccgagg cgcgcactca ccggacctga gccgggcgac
     1381 cgttcaccgg cgctagcgcc tgaccacctc cctgccggcg tggagggcgc ggctcgacgc
     1441 gcgcacgaga ctgcctcctt gcctgacacg ggcgcatggc cgcggatccg cttgcgaagc
     1501 ggaacctccg tcatcgcagc agcggactga cgtaagccca agccaacacg cgacttccgg
     1561 tggtgctggg gcaacgacag tttcctctct cgaccgcgat aaccgggatc acgagcggcc
     1621 gcccggctac accgtcaccc gggccacacc gtcaccctgc ctctcccgat cgtcttcgcc
     1681 gtcggaagtg ttggtaatga gccgggcccc gcgaccgcgg gtggcgaagc tgatgaacca
     1741 gcggatgagg acgatcaggc ggttctggaa gccgacgagg tagaagatgt gcacgaccag
     1801 ccaggcggcc caggcggcga agccgctcag ccggatgagg tggaggtcgg caaccgcgcg
     1861 ggcgcggccg atcgtcgcga gattgccctt gtccaggtag tggaacgcct cgattgggcg
     1921 gccgctgagg cgcgcacgaa cgagcttggc ggcatagcga ccctgttgca tcgcgaccgg
     1981 cgcgacgccg aggagctcct ggacgccacc atcgcggcta cgtacgcgga ccatgtcgcc
     2041 gagcgccaga acctcggggt ggccggggag tgtcaggtcc ggctcgacgg tcacccttcc
     2101 ggcgcggtcc acgtccgcgc cggacagctc accgagctgg gacgccaggc gcgacgcctc
     2161 gacgcccgcc gcccagatcg cgttgcgcgc ggggatgcga gcggtgccgc catcgggcgc
     2221 cgcgaccgtg acggcatcct cgtcgatcgc gacaaccgtg cgctccaaca gcagagtgac
     2281 gccaagggac tcaagcgagc gcgcggcttt gcgcgacagc gagggcggga aggcggtcag
     2341 gacgcggtcg gcggtctcga tcaacaggac ttgggactcc gcggagtcga tggagcggaa
     2401 ctcgccgcgc agggtgccgc gggcgagttc ggcgatctgg ccggccatct cgacgccggt
     2461 cgggccggcc ccgacgacga cgaaggtgag tagcgcccgg cgcctgtcgg ggtccggctc
     2521 ggtctcggcg tcctcgaatg cgctcaggat tcgcgcacgt gtggcgagcg cgctctcgag
     2581 cgatttgacc tcgggcgcgt agcggcgcca gtcgtcgtgt ccgaagtagg agtagtgcga
     2641 gccgccggcg acgatcagcg tgtcgtaggg cagggagccc tcggcgtggt ggacttggcg
     2701 gctgtcgagg tcgaaaccgg tgacctcggc catcaggacc cgcacgttgc ggtggcgtct
     2761 gaagacgccg cggagcgggt aagcgacctc gcccggcgac agcgcgccgg ttgcgacctg
     2821 gtaggtgagt ggctggaaca ggtggaagtt gcgtcgatcg acgatcgtga gctcgaccgg
     2881 cgccgtggcg aggtgctgcg ccgcctgcag gccggcgaac cctccgccga tgacgaccac
     2941 ccggtgccgg tgtgctgccg tgccactggt cgcactcatg gctgaggtgc gctgcatcgg
     3001 ggctcctttg ctctgactag gtcaagggtc gcacggggcg cacctcagtg gcggcagcac
     3061 ctgctcgcgc cttctaagca gcgggtcgga ggttcgagtc cgcgcggggg catcctcaga
     3121 ggccgcttcg aagcggaatg cctggcacct cgctggcagg tcgttctagc ccggctcgcg
     3181 atcgcggagg acgctcggtc gttgcgcaga gagcgtctgc cgcgcttcct cttcctccgc
     3241 cggatcgggt gctcggccaa cggcacgcgc ggagggctcg gcctctgcgt actgcattag
     3301 ccacacgccg gctatcgcca tggcgagaat gaccacaccg gctatgagca ggagggcggt
     3361 cacgtcgaat gacgtcgcag ggcggcgtag aacccgccga gggcaagtat cgagggcacc
     3421 cagagacctg tgaacaaggc ctcctgccgc gagtcggtga accacagaac cacggagaga
     3481 acgaaggcga ggaaggcggc gagcgtgatc agcgaagcgc ccggatcgcg ccggatcagg
     3541 cgccgggcgc gagccccgct cgcgtgctgc gcgtcggcag ggttcatgtt cttgtcagcc
     3601 tccagagatc ttgacgacat cggatttggc gacctccccg gaaccggttg gttcaagttc
     3661 gaatgccggt ggcctctcgg tccgagcggc gcgccgccct ccacggggct tcgagatcag
     3721 gcctctcagg ccgagctcct tggggtaggg ctgcaggtac gtctgggagc gggcccactc
     3781 ggtgccggcg gcgcgaaggt gccgtgacag aagtgcgagg ggaaccgcca ccggcacgag
     3841 accgacccgg tagtcctcga tcgcctcgcg gagctcttgg cggtcgcacg atccgagagc
     3901 tcccttgaga tgcccggcca ggtgcatgag agcattggcc tgccggcctg gggtcgcggg
     3961 ccgtgcgaac gcaaccccat gtagctcgcg gtagctccgg gccagcagtt cgggctggag
     4021 acggccttgg ccggccacaa gacggccgag ccgccgggcg gactcggcat cgtgcgccag
     4081 cacggccgcc ttctcggccg agtggaagcg gatcaagctt tcggcggtcc accgaccggc
     4141 aaagaagtcg cgcacccggg catgcgcgaa gaccctgtcg gcgaagtgct cgcgcaggcc
     4201 tgggtcgttc aggcggccct cctcctcgat cgccagtgtg ggcatcgcgt c
//
LOCUS       DASQWN010000280         3353 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_817097, whole genome shotgun sequence.
ACCESSION   DASQWN010000280 DASQWN010000000
VERSION     DASQWN010000280.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 3353)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3353)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3353
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_817097"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1752)
                     /gene="uvrC"
                     /locus_tag="VE686_05345"
     CDS             complement(<1..1752)
                     /gene="uvrC"
                     /locus_tag="VE686_05345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020090646.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009380 - excinuclease repair complex
                     [Evidence IEA];
                     GO_function: GO:0009381 - excinuclease ABC activity
                     [Evidence IEA];
                     GO_process: GO:0006289 - nucleotide-excision repair
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrC"
                     /protein_id="HYY83911.1"
                     /translation="MSRPPANDVPPDILDEDLDDEAALPLDEAPELDFDLEANPGSVS
                     AGAEVIRGFWQTLPHGPGVYRMLDGKGDVLYVGKAKSLKARVGSYVRGQGHSNRIARM
                     IAETGSMEFVTTATETEALLLEANLIKQLKPRYNVLLRDDKSLPYILLTGDGDAPQIV
                     KHRGSRKRKGDYYGPFASVWAVNRTINALQRAFLLRSCNDSYYENRTRPCLLFQIKRC
                     SGPCTGEVSLDDYAALAQEARAFLSGKSNLVKDRLSTEMQQAAEVLDFERAARYRDRL
                     AALSAIQGVQGVNTQGVEEADVFAIDEQAGQFCVEVFFFRNFQNWGNRAYFPKADRSM
                     TKEEVLASFLAQFYDDKPAPRVILLSHDVEDCELLAAALSTRAEKRVEIHAPKRGERR
                     QLLDYALRNAKEALGRRLADTASQQKLMQSVAQAFGLPKAPRRIDVFDNSHIMGASAV
                     GAMIVAGASGFMKTHYRTFNIKSEELTPGDDYGMMREVLRRRFGRLVKEAPRVGSPPS
                     PGGGGSDRASDPGWGDSASERGADAAAASSGTTVTPTRASGATSPLQGEVGEASDDVF
                     PAWPDLVLIDGGKGQLDA"
     gene            1885..2397
                     /locus_tag="VE686_05350"
     CDS             1885..2397
                     /locus_tag="VE686_05350"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY83912.1"
                     /translation="MGSVSFRAAAAGALALGLLPGLAGCQSGGAGGGLFAASGSPAGK
                     PIAVESIEGVPATVRTALSDELASAATSRRVELVGSSAQARYRVRGYLSTEPTADGGS
                     QLAFVWDVFDAHKRRTNRVTGTSPMQTASLDGLDTEALRKLAAESMDGLATFLSASAA
                     APAEAEPDAS"
     gene            2478..>3353
                     /locus_tag="VE686_05355"
     CDS             2478..>3353
                     /locus_tag="VE686_05355"
                     /EC_number="2.7.6.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003599505.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0004749 - ribose phosphate diphosphokinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016301 - kinase activity [Evidence IEA];
                     GO_process: GO:0006015 - 5-phosphoribose 1-diphosphate
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:0009156 - ribonucleoside monophosphate
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:0009165 - nucleotide biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0016310 - phosphorylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribose-phosphate pyrophosphokinase"
                     /protein_id="HYY83913.1"
                     /translation="MKSSIKLVAGNSNRPLAEAIGAYLGQPLARCQVRRFADMEVFVE
                     IQENVRGEDVYVIQSTSFPANDHLMELLIIVDALRRSSARRITAVIPYFGYARQDRKP
                     AARTPISAKLVANLITRAGVDRVMTLDLHAGQIQGFFDIPTDNLFAAPVMVRDIKERL
                     SGERMVVSPDVGGVVRARAIAKRIDSPLAIVDKRRERAGESEVMNIIGEVEGRSCILV
                     DDIVDSGGTLVNAAEALLAQGAKEVYAYITHGVLSGGAVSRIANSKMKELVITDSIQP
                     TEAVKVARNIRVIPIA"
BASE COUNT          490 a         1164 c         1178 g          521 t
ORIGIN      
        1 ggcatcgagc tgccccttgc cgccgtcgat gagcacgaga tcgggccacg ccgggaacac
       61 gtcgtcgctg gcttccccta cctccccctg gaggggggag gtcgcgccgg aggcgcgggt
      121 gggggtgaca gtggttccag atgaggccgc ggcggcgtcc gcgccccttt cggaagcgct
      181 gtcaccccac cccggatcgc tggcgcgatc cgaccctccc cctccagggg agggtggcga
      241 cccgacccgc ggcgcctcct tcacgaggcg cccgaagcgg cggcgcagga cctcgcgcat
      301 catgccgtag tcgtcgcccg gggtgagctc ctcggacttg atgttgaagg tgcggtagtg
      361 cgtcttcatg aagccgctgg cgccggcgac gatcatggcg ccgacggcgc tcgcgcccat
      421 gatgtgcgag ttgtcgaaca cgtcgatgcg ccgtggcgcc ttgggcaggc cgaacgcctg
      481 cgccacggac tgcatgagct tctgctgcga ggccgtgtcg gcgagacggc ggccgagcgc
      541 ctccttggcg ttgcgcagcg cgtagtcgag gagctggcgg cgctcgccgc gtttcggagc
      601 gtggatctcg acccgcttct cggcccgggt ggacagggcg gcagcgagaa gctcgcagtc
      661 ctcgacgtcg tgcgacagga ggatcacccg cggcgctggc ttgtcgtcgt agaactgggc
      721 caggaaggag gcgagcacct cctccttggt catcgagcgg tcggccttcg gaaagtacgc
      781 gcggttcccc cagttctgga agttgcggaa gaagaacacc tcgacgcaga actggcccgc
      841 ctgctcgtcg atggcgaaca cgtccgcctc ctcgacgcct tgcgtgttca cgccctgcac
      901 gccctggatc gccgacaggg ccgcgaggcg gtcgcggtag cgggccgcgc gctcgaaatc
      961 gaggacctcg gcggcctgct gcatctcggt ggagaggcga tccttcacga ggttcgactt
     1021 gcccgacagg aacgcccgcg cctcctgcgc cagcgccgcg tagtcgtcga gcgagacctc
     1081 gcccgtgcac ggaccggagc agcgcttgat ctggaacaag aggcagggcc gggtgcggtt
     1141 ctcgtagtag ctgtcgttgc acgagcgcag caggaaggcg cgctgcagtg cgttgatggt
     1201 gcggttcacc gcccatacgc tggcgaaggg cccgtagtag tcccccttgc gcttgcgcga
     1261 gccgcggtgc ttgacgatct gcggcgcgtc gccgtcgccc gtgagcagga tgtagggcag
     1321 cgatttgtcg tcgcgcagga gcacgttgta gcgcggcttc agctgcttga tgaggttggc
     1381 ctcgagcagc agcgcctcgg tctcggtcgc cgtggtgacg aactccatcg agcccgtctc
     1441 ggcgatcatg cgcgcgatgc ggttcgagtg gccctggccg cgcacgtacg agccgacgcg
     1501 cgccttgagg ctcttggcct tgccgacgta gagcacgtcg cccttgccat cgagcatgcg
     1561 gtagacgccg ggcccgtgcg gcagcgtctg ccagaagcca cggatgacct cggcgccggc
     1621 gctgaccgag cccgggttcg cctcgaggtc gaagtcgagc tccggcgcct cgtcgagcgg
     1681 aagcgccgcc tcgtcgtcga ggtcctcatc caggatgtcg gggggaacgt cgttcgcggg
     1741 cgggcgggac atgggggtga tgtaatcggg tgccgtggac cggggaagtg cggcacgagc
     1801 ccgcctctgg accgcggcgg ctcgccggcc taggttcctg ccccacggcc gcaacacatc
     1861 aacgacaagg gccgggaggc acgcatgggg agcgtctcgt ttcgcgccgc tgcggccggc
     1921 gccctcgcgc ttggcttgtt gcctggcttg gcagggtgcc agagcggcgg cgcaggcggc
     1981 gggctcttcg ccgccagcgg gtcgccggcc ggcaagccta tcgcggtcga gagcatcgag
     2041 ggggttccgg cgaccgtgag aacggcgctt tcggatgagc tcgcctcggc ggcgacgagc
     2101 cgcagggtcg agctcgtggg cagctcggcg caggcccgct accgcgtccg cggctatctc
     2161 tcgaccgagc cgacggccga cggcggcagc cagctcgctt tcgtgtggga cgtcttcgac
     2221 gcgcacaagc gccgcaccaa ccgcgtcacc ggcacgagcc cgatgcagac ggcctccctc
     2281 gacggcctcg acacggaggc gctgcgcaag ctcgccgccg agagcatgga cgggctcgcg
     2341 accttcctca gcgccagcgc cgccgcccct gccgaggcag agcccgacgc atcttaggcg
     2401 tttgtcgccg tattgtgacg gtttgctatc gctgctaaga cccgggcgcc ccgcagcgca
     2461 gccaaccacg cctcccgatg aaatcctcga tcaagctcgt cgcggggaac tcgaaccgcc
     2521 ccctcgccga ggctatcggc gcctacctgg gccagccgct cgcgcgctgc caggtccggc
     2581 gtttcgccga catggaggtc ttcgtcgaga tccaggagaa cgtgcgcggc gaggacgtct
     2641 acgtcatcca gtcgacgtcg ttcccggcga acgaccacct gatggagctc ctgatcatcg
     2701 tcgatgccct gcgccgctcc tcggcgcgcc gcatcaccgc ggtgatcccc tacttcggct
     2761 acgcgcggca ggaccgcaag cccgcggcgc gcaccccgat ctcggcgaag ctcgtcgcca
     2821 acctcatcac ccgcgcgggc gtcgaccggg tcatgaccct cgacctccac gccggccaga
     2881 tccagggctt cttcgacatc ccgaccgaca acctcttcgc ggcgcccgtg atggtgcgcg
     2941 acatcaagga gcggctgtcg ggcgagcgca tggtggtgtc gcccgacgtc ggcggcgtgg
     3001 tgcgcgcccg cgccatcgcc aagcgcatcg acagcccgct cgccatcgtc gacaagcgcc
     3061 gcgagcgcgc cggcgagtcc gaggtgatga acatcatcgg cgaggtcgag gggcgctcct
     3121 gcattctcgt cgacgacatc gtcgactcgg gcggcaccct cgtgaacgcc gccgaggcgc
     3181 tgctcgcgca aggggcgaag gaggtctacg cctacatcac ccacggcgtg ttgtcgggcg
     3241 gggccgtgtc gaggatcgcc aactccaaga tgaaggagct cgtgatcacc gactcgatcc
     3301 agccgaccga ggccgtgaag gtggcgcgca acatccgcgt catcccgatc gcg
//
LOCUS       DASQWN010000281         9124 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_743248, whole genome shotgun sequence.
ACCESSION   DASQWN010000281 DASQWN010000000
VERSION     DASQWN010000281.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 9124)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9124)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9124
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_743248"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..489
                     /locus_tag="VE686_05360"
     CDS             <1..489
                     /locus_tag="VE686_05360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017964122.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter ATP-binding protein"
                     /protein_id="HYY83914.1"
                     /translation="GMVFQHFNLFPHLTILENCTLAPIWVKKMPRKEAEEVAMHYLTR
                     VKIPEQAKKYPGQLSGGQQQRVAIARSLCMTPKIMLFDEPTSALDPEMVKEVLDTMVS
                     LAEEGMTMLCVTHEMGFARQVADRVIFMDYGQIVESNTPQEFFKNPQHERTKLFLSQI
                     LH"
     gene            633..1040
                     /gene="secG"
                     /locus_tag="VE686_05365"
     CDS             633..1040
                     /gene="secG"
                     /locus_tag="VE686_05365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012335102.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0015450 - protein-transporting ATPase
                     activity [Evidence IEA];
                     GO_process: GO:0043952 - protein transport by the Sec
                     complex [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecG"
                     /protein_id="HYY83915.1"
                     /translation="MQTVIIVVHLFIVLALIGVVLLQRSEGGLGLGGGGGGGGGFMTG
                     RGQANALTRATAILAALFFVTSLALAWISSHGSAPRSILERNAPGAPASQPAPGGTGG
                     NVLDQLRQMQGGGQSGAPAAAPEPATPQVPQSR"
     gene            1151..2779
                     /locus_tag="VE686_05370"
     CDS             1151..2779
                     /locus_tag="VE686_05370"
                     /EC_number="6.3.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011158435.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003883 - CTP synthase activity [Evidence
                     IEA];
                     GO_process: GO:0006221 - pyrimidine nucleotide
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:0006241 - CTP biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CTP synthase"
                     /protein_id="HYY83916.1"
                     /translation="MTRYVFITGGVVSSLGKGLASAALGALLQARGYKVRLRKLDPYL
                     NVDPGTMSPYQHGEVFVTDDGAETDLDLGHYERFTGVPANRADNVTTGRIYQDIITKE
                     RRGDYLGATIQVIPHVTNAIKDFVVTGNEDFDFVLVEIGGTVGDIEGLPFFEAIRQLG
                     NDLARGQAIYVHLTLVPYIPSAGELKTKPTQHSVAELRSIGIQPDILLCRTDRPIPRE
                     ERRKMGLFCNVRESAVIEARDVASIYDVPLSYHAEGLDTEVLAAFGIEGARAPDLARW
                     QRISDRVRSPEGDVTIAIVGKYTGLKDAYKSLIEALHHGGIANRVKVNLDWIESEVFE
                     KEDPAPFLEGVHGILVPGGFGYRGAEGKIRAACYARERKIPYFGICFGMQMAVIEAAR
                     SLAGVGEANSTEFGPTPEPVVGLLTEWLKGNELETRAANGDLGGTMRLGAYDARLAPG
                     SKVAEIYGGTEISERHRHRYEVNMTYRGKLEDAGLRFSGISPDGLLPEIVEYQDHPWF
                     IGVQFHPELKSRPFEPHPLFASFVGAAVTQSRLV"
     gene            2788..3192
                     /locus_tag="VE686_05375"
     CDS             2788..3192
                     /locus_tag="VE686_05375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008963721.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF350 domain-containing protein"
                     /protein_id="HYY83917.1"
                     /translation="MSSAAISGLPQFLLYFAVALALVGLYLFLYTLVTAHNEFALIRQ
                     NVLSAALSLGMSLIGFALPLSSAVVHAQNVVDCLVWGVVAMLVQILVYYLVRIPVPNL
                     SQRIASGELSPALFLGAASLAAGIVNAASMTY"
     gene            3239..4090
                     /gene="kdsA"
                     /locus_tag="VE686_05380"
     CDS             3239..4090
                     /gene="kdsA"
                     /locus_tag="VE686_05380"
                     /EC_number="2.5.1.55"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018458071.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008676 - 3-deoxy-8-phosphooctulonate
                     synthase activity [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-8-phosphooctulonate synthase"
                     /protein_id="HYY83918.1"
                     /translation="MSLSSTPANAVVAVGQVRFGNALPLSLIAGPCALESREHALETA
                     SALKEIAARLGIGLVYKSSFDKANRTSASSARGLGLDKALPIFAEVRESLGLPVTTDV
                     HEIEQCRPVAEADDILQIPAFLCRQTDLLVAAAETGRVVNVKKGQFLAPWDMANVAAK
                     ITAAGNPNVMVTERGASFGYNTLVSDMRALPIMAQTTGAPVIFDATHSVQQPGGKGAT
                     SGGQREFVPVLARAAVAVGVAGVFIETHRDPDNAPSDGPNMVPLSELEGLVRQLQAFD
                     AIAKGAV"
     gene            4188..5375
                     /locus_tag="VE686_05385"
     CDS             4188..5375
                     /locus_tag="VE686_05385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018045336.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HYY83919.1"
                     /translation="MSPDRSVQRMILILAVSGFASTSAGRSVEPLVGVMARDLHSDPG
                     TVALLSAAFALPYAFIQPILGPVGDAFGKERMMPLCLGVLALAMLGGALTPNLPLLFA
                     LRILAGMAAGGVIPMGMAMIGDRVGMETRQIAISRFLAAVILGQLAGSSVAGLLAEVV
                     GWRGVFGVAFVMTGAAAVGAVVAFGRPPPPEAGFDLGVALARYRKVFAIPRARALYAF
                     VFVDGLAFFGLFPYVAPTLEARGEGGPFEAGLVLAGFAVGGLIYASLVGWMLRVLGVG
                     RMLAIGGFLSAGAFMALGVGHGWQVDAAVLVVLGIGFYMLHNSYQTQITEVLPEARAS
                     AIAFHAFSFFIGQALGVVLVGASLAGFGWTGTAFLCALAAAGLGLVSAWYLFWKPGSG
                     TSR"
     gene            complement(5506..5958)
                     /gene="queF"
                     /locus_tag="VE686_05390"
     CDS             complement(5506..5958)
                     /gene="queF"
                     /locus_tag="VE686_05390"
                     /EC_number="1.7.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015932852.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0033739 - preQ1 synthase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="preQ(1) synthase"
                     /protein_id="HYY83920.1"
                     /translation="MTENSPQLGRPSALPDSPDAAQLDRVPNPHPDTDYVARFAAPEF
                     TSLCPVTGQPDFAHLVIDYVPDRWLVESKSLKLYLSSFRSHGAFHEDCTVAIGKRLVA
                     LLAPRYLRIGGYWYPRGGIPIDVFWQTGEPPNGVWLPDQGVAPYRGRG"
     gene            6049..7332
                     /gene="eno"
                     /locus_tag="VE686_05395"
     CDS             6049..7332
                     /gene="eno"
                     /locus_tag="VE686_05395"
                     /EC_number="4.2.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019400288.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004634 - phosphopyruvate hydratase
                     activity [Evidence IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphopyruvate hydratase"
                     /protein_id="HYY83921.1"
                     /translation="MTAIVDLVARQILDSRGNPTVEVDAILEDGSMGRAAVPSGASTG
                     AHEAVELRDGDKARFGGKGVQKAVDAVNTEILEAIGGMNAEDQVAIDETMIALDGTPN
                     KARLGANAILGVSLAVAKAAADAAGLPLYRYVGGTQARVLPVPMMNIINGGAHADNPI
                     DFQEFMVMPVGAPSLSEAVRMGTEVFHTLKTGLKDAGHNTNVGDEGGFAPNLPSAEAA
                     LDFVMRSIEAAGYKPGQDLVIALDCASTEFFKDGSYAYEGEGKTRSPKEQAEYLAKLV
                     SAYPIVSIEDGMAEDDWEGWAALTELVGAKCQLVGDDLFVTNVTRLSDGIAKGVANSI
                     LVKVNQIGSLTETLAAVEMAHRAGYTAVMSHRSGETEDATIADLAVATNCGQIKTGSL
                     ARSDRLAKYNQLIRIEEELGPQARYAGRAALKALR"
     gene            7412..8308
                     /locus_tag="VE686_05400"
     CDS             7412..8308
                     /locus_tag="VE686_05400"
                     /inference="COORDINATES: protein motif:HMM:NF013088.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HYY83922.1"
                     /translation="MQVSARWGVLAMMGAVVIYGANFPLSRLATQQGLSPADLVALRY
                     AIGGAVLLPVFLRAGAATCAGVGWGRGIALAIMSGAPMALLMNTGLKFAPAGHGAALA
                     PGTVTVVGIVGSYLLFRVRPSAYALAGVTVVLGGLACIAAAGTASGPTVLLGDLLFVL
                     NGLLWGFYPLLLQRWQVGGMVSTSIVSVLSLPYIPLYLAFLHPGLMQVDPWIVAFHAV
                     NQGLVNIVLGLWLWATAVRLLGAARAQRFPPLIPVFGTLLAMPILGEIPGPLQALGVG
                     LIVSGLVLAAFGAQLTARLRGR"
     gene            8394..8708
                     /locus_tag="VE686_05405"
     CDS             8394..8708
                     /locus_tag="VE686_05405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012454783.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="septum formation initiator family protein"
                     /protein_id="HYY83923.1"
                     /translation="MVVRRRLRAFLVPLLLYGVSGGIVGYFVHHAHTGSRGLEAKREL
                     KRQAYQVGQELEAVKAERTSWERRLALLRSDQIDRDLLEERARAVLGRVHRNDLVIIT
                     GP"
     gene            8910..>9124
                     /locus_tag="VE686_05410"
     CDS             8910..>9124
                     /locus_tag="VE686_05410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009491177.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016624 - oxidoreductase activity, acting
                     on the aldehyde or oxo group of donors, disulfide as
                     acceptor [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine pyrophosphate-dependent enzyme"
                     /protein_id="HYY83924.1"
                     /translation="MGRAATGATKAAKKPSAAPQFDKDEDLHAYREMLLIRRFEEKAG
                     QMYGMGLIGGFCHLYIGQEAVVVGMQMA"
BASE COUNT         1326 a         3179 c         3081 g         1538 t
ORIGIN      
        1 ggcatggtgt tccagcattt caacctcttc ccgcacctga ccatcctgga gaactgcacc
       61 ctcgcgccga tctgggtgaa gaagatgccc cggaaggagg ccgaggaagt ggccatgcac
      121 tatctgaccc gggtcaagat ccccgagcag gccaagaagt acccgggcca gctctccggc
      181 ggccagcagc agcgcgtcgc catcgcgcgc tccctgtgca tgacgccgaa gatcatgctg
      241 ttcgatgagc cgacctccgc cctcgacccc gagatggtga aggaggtcct cgacaccatg
      301 gtgtcgctgg ccgaggaggg aatgaccatg ctgtgcgtga cgcacgagat gggcttcgcg
      361 cgccaggtcg cggaccgggt gatcttcatg gattacggcc agatcgtcga gtcgaacacg
      421 ccgcaggagt tcttcaagaa cccgcagcac gagcgcacca agctgttcct gagccaaatc
      481 ctgcactgac gggcggcggg gcttggtgcc aggacgcgcc gtccccatct ctcgggctgc
      541 gacagcgcga gcgcccgcgc gggttggctc ggagcggcac ttcgtgtaac cagcccgcga
      601 acgcgagggg ccgcgcgccc gaccggaatc ccatgcagac cgtcatcatc gtcgtccacc
      661 tgttcatcgt ccttgccctc atcggcgtgg tgctgctgca gcgctccgaa ggcgggctcg
      721 ggctcggcgg gggcggaggg ggcggcggtg gcttcatgac gggccgcggg caggcgaacg
      781 cgctcacgcg cgccacggcg atcctcgcag cgctgttctt cgtgacgagc ctcgccctcg
      841 cctggatctc gtctcacggc agcgcgccgc gctcgatcct ggaacggaat gcgcccggcg
      901 caccggcgag ccagcctgcg cctggcggga cgggcggtaa cgtcctcgac cagctgcgac
      961 agatgcaggg cggcggtcaa agcggggcgc ccgccgctgc gcccgagccg gcgacgccgc
     1021 aggttccgca atcgcgctga tctgaaccga gggccgggcg accggccctt ctcttttgct
     1081 ggggacggcg aaccgatcgg cggcgtctcg ctttgacgag ccgagcggcg ctccttatgg
     1141 attgaagccc atgacgcggt acgtgttcat caccggcggc gtggtgtctt ccctgggcaa
     1201 gggcctggca tcggccgcgc tcggggcgct cctgcaggcc cgcggctaca aggtccgcct
     1261 gcgcaagctc gacccctacc tcaacgtcga tccgggcacc atgagcccgt atcagcacgg
     1321 cgaggtcttc gtgaccgacg acggcgccga gacggacctc gacctcgggc actacgagcg
     1381 cttcaccggc gtcccggcga atcgcgccga caacgtcacc acgggccgca tctaccagga
     1441 catcatcacc aaggagcgcc gcggcgacta tctgggcgcg acgatccagg tgatcccgca
     1501 cgtcacgaac gccatcaagg acttcgtcgt caccggcaac gaagacttcg acttcgtcct
     1561 cgtggagatc ggcggcacgg tgggcgacat cgagggcctg ccgttcttcg aggccatccg
     1621 ccagctcggc aacgatctcg cgcgcgggca ggcgatctat gtccatttga cgctcgtgcc
     1681 ctacatcccc tccgccgggg agctcaagac caagccgacg cagcactcgg tggccgagct
     1741 gcgctccatc ggcatccagc ccgacattct cctatgccgc accgatcgcc cgatccctcg
     1801 tgaggagcgg cggaagatgg ggctgttctg caacgtgcgc gagagcgccg tgatcgaggc
     1861 tcgggacgtt gcctcgatct acgatgtgcc gctgtcgtac cacgcggagg ggctcgacac
     1921 cgaggtgctg gcggccttcg gcatcgaggg cgcgcgcgcg cccgacctcg cgcgttggca
     1981 acgcatctcg gaccgggtca ggagccccga gggcgatgtc accatcgcga tcgtcgggaa
     2041 gtacacgggc ctgaaggacg cctacaagtc gctcatcgag gcgctgcacc acggcggcat
     2101 cgccaaccgg gtcaaggtca acctcgactg gatcgagagc gaggtgttcg agaaggaaga
     2161 ccccgcgccc ttcctcgaag gcgtgcacgg catcctggtg cccggcgggt tcggctaccg
     2221 cggggccgag ggcaagatcc gcgccgcctg ctacgcccgc gagcgcaaga tcccctattt
     2281 cggcatctgc ttcgggatgc agatggcggt gatcgaggcg gcgcgctcgc tcgccggcgt
     2341 cggcgaggcg aactcgaccg agttcggccc gacgcccgag ccggtggtcg ggctgctcac
     2401 cgaatggctg aagggcaatg agcttgagac gcgcgccgcc aatggcgatc tcggcggcac
     2461 catgcgcctc ggggcctacg acgcgcggct tgcgcccggc agcaaggtcg cggagatcta
     2521 cggcgggacg gagatctcgg aacgccaccg tcaccggtac gaggtcaaca tgacgtaccg
     2581 cggcaagctc gaggacgcgg gcttgcgctt ctcgggcatc tccccggacg ggcttctgcc
     2641 tgaaatcgtg gagtaccagg accacccgtg gttcatcggc gtgcagttcc acccggagct
     2701 gaagtcgcgc ccattcgagc cgcatccgct cttcgcgagc ttcgtcggcg ccgccgtcac
     2761 ccaaagccgt ctggtctagg agcgcccgtg tcgtccgccg cgatctcggg actgccgcag
     2821 ttcctgctct atttcgccgt cgcgctcgcg ctggttgggc tgtacctctt cctctacacg
     2881 ctcgtgactg cgcacaacga gttcgcgctg atccggcaga acgtgctctc ggcggcgctc
     2941 tccctgggga tgagcctcat cggcttcgcc ctgccgctct ccagcgccgt cgtgcacgcg
     3001 cagaacgtcg tcgactgcct ggtgtggggc gtcgtcgcca tgctggtgca gatcctcgtc
     3061 tactatcttg tccgcatccc ggtgccgaac ctctcacagc gaatcgcctc cggcgagctc
     3121 tcgcccgccc tgttcctggg cgccgcctcc ctcgccgcgg ggatcgtcaa cgccgcgtcg
     3181 atgacctact gacgcgctgc cttccttccc gcgcccgttc ggtctaggtc acacccgcat
     3241 gagcctctcc tccacgcctg ccaacgcagt cgtcgccgtc ggccaggtcc gctttggaaa
     3301 tgccttgccg ctgagcctca tcgcgggccc gtgcgcgctc gagagccgcg agcatgccct
     3361 cgagaccgcg tcggcgctga aggagatcgc cgcgcggctc ggcatcgggc tcgtctacaa
     3421 gtcgtccttc gacaaggcta accggacgtc ggcctcgagc gcccgcggcc tcgggctcga
     3481 caaggcgctg ccgatcttcg ccgaggtgcg cgaaagcctc ggactgccgg tgacgacgga
     3541 cgtgcacgag atcgagcagt gccggcccgt ggccgaggcc gacgatatcc tgcagatccc
     3601 ggcattcctg tgccgccaga ccgacctcct cgttgcggcc gcggagaccg ggcgggtcgt
     3661 gaacgtcaag aaaggacagt tcctggcgcc ctgggacatg gcgaacgtcg cagcgaagat
     3721 cactgccgcg ggcaatccga acgtgatggt gacggagcgg ggtgcctcgt tcggctacaa
     3781 cacgctcgtc tcggacatgc gcgcgctgcc catcatggcc cagacaacgg gtgcgccggt
     3841 gatcttcgac gcgacacact cggtgcagca gcccggcggc aagggcgcca cgtcgggagg
     3901 gcagcgggag ttcgttcccg tcctggcccg cgccgccgtc gcggtcggcg tcgccggcgt
     3961 gttcatcgaa acgcaccgcg accccgacaa tgccccgtcg gacgggccca acatggtgcc
     4021 tttgagtgag ctcgaggggc tggtgcggca gctccaggcc ttcgacgcga tcgccaaggg
     4081 cgcggtctga ccccgcgccg tgcgcgcgcg ggccgtgcgc cgcgcccact gccgccgatt
     4141 gtttggggcc gctagggtgc aggacccgcc gctctcctga agtccccatg tcccccgacc
     4201 gctccgttca gcgcatgatc ctcatccttg cggtgagcgg ctttgcgagc acgtctgcgg
     4261 gccgctcggt cgagccgctg gtcggcgtca tggcgcgcga tcttcacagc gatccgggca
     4321 ccgtggcgct gctctcggcc gccttcgccc tgccttacgc tttcatccag cccatcctcg
     4381 ggcccgtggg cgacgccttc ggcaaggagc gcatgatgcc gctctgcctc ggcgtgctcg
     4441 cgctcgccat gctcggaggc gcgctgacgc cgaacctgcc gctcctgttc gccctgcgca
     4501 tcctcgccgg catggcggcg ggcggcgtca tcccgatggg catggcgatg atcggcgacc
     4561 gggtcgggat ggaaacgcgc cagatcgcca tcagccgctt cctcgccgct gtgatcctcg
     4621 gccagcttgc cgggtcttcg gtcgcgggcc tactcgccga ggtagtcggc tggcgcggcg
     4681 tgttcggcgt ggcgttcgtg atgacgggag cggcggccgt cggcgcggtc gtggcgttcg
     4741 gccggccgcc accgcccgag gcgggcttcg acttgggcgt ggcgctcgcg cgctaccgca
     4801 aggtcttcgc gatcccgcgc gcccgcgccc tttacgcctt cgtgttcgtc gatggcctcg
     4861 cgttcttcgg cctgtttcct tacgtggcgc cgacgctcga ggcacgcggg gagggcggcc
     4921 cgttcgaggc cggcctcgtg ctcgccgggt tcgcggtcgg cgggctcatc tacgcctccc
     4981 tcgtcggctg gatgctgcgc gtgctcggcg tcggccgcat gctcgccatc ggaggattcc
     5041 tgtctgcggg agccttcatg gcgctcggcg tcggccacgg ctggcaggtg gacgcggcgg
     5101 tcctcgtggt gctcggcatc ggcttctaca tgctgcacaa ttcgtaccag acgcagatca
     5161 cggaggtcct gccggaagcg cgcgcctcgg cgatcgcctt ccatgcgttc tccttcttca
     5221 tcggccaggc gctgggggtc gtgctcgtcg gcgcgtcgct cgccggcttc ggctggaccg
     5281 ggacggcatt tctgtgtgcc ctcgcggccg cgggcctcgg gcttgtctcg gcgtggtatc
     5341 ttttctggaa gcctgggtcg gggacgtcgc gttagcgccg acgggggctc gtcgtcatcg
     5401 tcggtcgtcg ccggcatctt cccggaatcg tcgccggccc cgctcgggcg tttccgtcat
     5461 cttcccggca tcttccgcgt atttgcagcc gctggtagcg aacgctcagc cgcggccgcg
     5521 gtaaggcgcg acgccctggt cggggagcca gacgccgttc ggcggctcgc cggtctgcca
     5581 gaacacgtcg atcgggatgc cgccgcgcgg gtaccaatag ccgccgatgc gcaggtagcg
     5641 cggcgcaagc agcgcgacga ggcgcttgcc gattgcgacc gtgcagtcct cgtggaacgc
     5701 gccgtggctg cggaagctcg acaggtagag cttcagcgat ttcgattcca cgagccagcg
     5761 gtccggcacg tagtcgatga cgaggtgcgc gaaatcgggc tgccccgtga ccgggcacag
     5821 ggaggtgaac tccggcgctg cgaagcgcgc cacgtagtcg gtgtcgggat gcgggttggg
     5881 tacccggtcg agctgcgccg cgtcgggcga gtcggggagg gcgctcgggc ggccgagctg
     5941 gggggagttt tcggtcatgc cgctatatag cgcgtcgcct tgccggatca gcacatctgg
     6001 tcgataagcc gcgccactct gaacgcagac agcaggagcg cgccgctcat gaccgccatc
     6061 gtcgacctcg tcgcccgcca gatcctggac agccggggca acccgacggt cgaggtcgac
     6121 gcgatcctcg aggacggctc catgggccgc gccgctgtcc cgtccggcgc ctcgacgggc
     6181 gcgcatgagg ccgtggagtt gcgcgacggc gacaaggcac gcttcggcgg caagggcgtg
     6241 cagaaggccg tcgacgccgt caacacggag atcctcgaag cgataggcgg catgaacgcc
     6301 gaggaccagg tcgccatcga cgagaccatg atcgccctcg acggcacgcc caacaaggct
     6361 cgtctcggcg ccaacgccat cctgggcgtc tcgctcgcgg tcgcgaaagc cgcggccgac
     6421 gctgccggcc tgccgctcta ccgctacgtc ggcggcaccc aggcccgggt tctgcccgtg
     6481 cccatgatga acatcatcaa tggcggcgcg cacgcggaca acccgatcga cttccaggag
     6541 ttcatggtga tgcccgtcgg cgcaccctcg ctgtcggagg ccgtgcgcat gggtacggag
     6601 gtgttccaca ccctcaagac ggggctgaag gacgccgggc acaacaccaa cgtcggcgac
     6661 gagggcggct tcgcgccgaa cctgccgtcc gcagaggcgg ccctcgactt cgtcatgcgc
     6721 tcgatcgaag cggcgggcta caagcccggc caggatctcg tcatcgcgct cgactgcgcc
     6781 tcgacggagt tcttcaagga cggctcgtat gcctatgaag gcgaaggaaa aacccgatcc
     6841 ccgaaggagc aggctgagta cctggcgaag ctcgtttcgg cctaccccat tgtgtcgatt
     6901 gaggacggca tggcggagga cgactgggag ggttgggctg cgctgacgga actcgtcggg
     6961 gcgaaatgcc agctcgtcgg ggacgatctg ttcgtgacga acgtcacccg cctctcggac
     7021 gggatcgcca agggcgtcgc gaactcgatc ctcgtcaagg tcaaccagat cggctccctc
     7081 accgagacgc tggcggccgt cgagatggcg caccgcgccg gctacacggc cgtgatgtcc
     7141 caccgctcgg gagagaccga ggacgcgacc atcgccgacc tcgccgtcgc gacgaactgc
     7201 gggcagatca agaccggctc gctcgcgcgc tccgaccggc tcgccaagta caaccagctc
     7261 atccgcatcg aggaggagct cgggccgcag gcccgttacg ccggacgcgc tgccctcaag
     7321 gccctgcggt gaggcgcgtt cctctcccgc ttgtgggagg ggagtcgcaa gtcgcgcgcg
     7381 cttgtccctc tgatcgcgga gagggctgga cgtgcaggtg agcgcccgct ggggtgttct
     7441 cgccatgatg ggcgccgtgg tcatttacgg ggcgaacttt cccctgagcc gcctcgcaac
     7501 gcagcagggg ctgtcgccgg ccgatctcgt cgccttgcgc tatgccattg ggggcgcggt
     7561 gctgctgccg gtcttcctgc gcgccggggc cgccacctgc gccggggtcg gatggggccg
     7621 cggcatcgcg ctcgcgatca tgagcggcgc gccgatggcg ctcctcatga acaccggcct
     7681 gaagttcgcg ccggcggggc acggcgcggc gctcgcgcct ggcaccgtca cggtggtcgg
     7741 catcgtcggc agctacctgc tctttcgggt gcggccctcg gcctacgccc ttgcgggcgt
     7801 cacggtggtg ctcggcgggc tcgcctgcat cgccgccgcc gggacggcgt cgggcccgac
     7861 ggtgctgctc ggagacttgc tcttcgtcct caacggcctg ctgtggggct tctaccccct
     7921 cctgcttcag cgatggcagg tgggcggcat ggtctcgacc agcatcgtct ccgtcctctc
     7981 gctgccgtac atccccctgt atcttgcgtt cctccatccc ggcttgatgc aggtggaccc
     8041 ttggatcgtg gcgttccacg ccgtcaacca ggggctcgtc aacatcgtcc tcggcctctg
     8101 gctctgggcg accgcggtgc ggctgctcgg agccgcgcgg gcgcagcgct ttccgccgct
     8161 catcccggtg ttcggcacgc tcctggcgat gcccatcctc ggcgaaattc ccggacccct
     8221 gcaggcgctc ggggtggggc tgatcgtctc cggcctcgtg ctcgccgcct tcggcgcgca
     8281 gctcacggcc cgcctgcggg gccggtagcg ctcgctcgca cctccttcat gggcgagcga
     8341 ggatttctcc cctcctaaca tgtccttaac catgccgggc tagcgtcgct gtcatggtcg
     8401 tgcggcggcg cctcagagcc ttcctcgtcc cgcttctcct gtacggggtg tcgggtggca
     8461 ttgtcggcta tttcgtccac catgcgcata ccggcagccg cgggctcgaa gcaaagcgcg
     8521 agctcaagcg gcaggcctac caggtcggcc aagagctcga ggcagtgaag gccgagcgca
     8581 cgagctggga gcgtcgcctc gccctgttgc ggtccgacca gatcgatcgc gacctcctcg
     8641 aggagcgcgc gcgggccgtg cttggacggg tgcaccgcaa cgatctcgtc atcatcactg
     8701 gaccttgatc gaccaacggt ccgcggtttg gaaagcggat caacacgttt catgttgatc
     8761 tcagaaacta caacacacag agctgcttag cctacgcgct gcaagcgcag ctcagctctc
     8821 ttcgggtctc gctttccgcg cgcgcgtcgg ctaatagtgg cttcaaggaa acgcttggag
     8881 aagccgctat ggcagtagcc gcccgttcca tgggccgcgc cgcgacgggc gcgaccaaag
     8941 ccgccaagaa accctctgcc gctccgcagt tcgacaagga cgaagacctc cacgcctacc
     9001 gcgagatgct cctcatccgc cgcttcgagg agaaggcggg gcagatgtac ggcatggggc
     9061 taatcggcgg cttctgccac ctctacatcg gccaggaagc cgtcgtcgtc ggcatgcaga
     9121 tggc
//
LOCUS       DASQWN010000282         2778 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_321214, whole genome shotgun sequence.
ACCESSION   DASQWN010000282 DASQWN010000000
VERSION     DASQWN010000282.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2778)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2778)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2778
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_321214"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..825)
                     /locus_tag="VE686_05415"
     CDS             complement(<1..825)
                     /locus_tag="VE686_05415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009764264.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0015914 - phospholipid transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MlaD family protein"
                     /protein_id="HYY83925.1"
                     /translation="METRANYALIGLFTLAVIAAAFGFVFWFSGGEGSQRRQPYRVVF
                     SGSVSGLTKGSVVLFNGIRAGEVTDMRLLPEDPRRVLAIIEVDRAIPIRTDTRARLEF
                     QGLTGVASIALSGGEPGAPPLTAGPGQPLPTIFADRSDFQDLMETARNLARRADDFLE
                     KMNRLVGDNEGAVNRTVQNVERFSQALSDNAPGIDRFLAQVGQAAERVGPLAARLETL
                     AANLDDLVRAVDRQQVTRIVANVDNFTQALGDSRQAINDTLRDAASLAKRLNDSAPK"
     gene            complement(830..1639)
                     /locus_tag="VE686_05420"
     CDS             complement(830..1639)
                     /locus_tag="VE686_05420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009764263.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HYY83926.1"
                     /translation="MLDRRAATMPDRDRETVIRVRDLEVGFGERLILDHLDLDVYRGE
                     ILGFVGGSGQGKSVLTRTILGLLPKRGGTIEVFGEDLDALSPASRQAVERRWGVLFQQ
                     GALFSSLTVKQNVQLPMREHLDLSERLLDELAILKIEMVGLAPDAADKLPSELSGGMI
                     KRASLARALALDPEVVFLDEPTSGLDPIGAGDFDELIVTLQRTLGLTVFMVTHDLDSL
                     YTVCDRIAALSKGRIIATGTVETMLASDDPWLKAYFHGKRARAVMDGASVR"
     gene            complement(1646..2674)
                     /locus_tag="VE686_05425"
     CDS             complement(1646..2674)
                     /locus_tag="VE686_05425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017487199.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MlaE family lipid ABC transporter permease
                     subunit"
                     /protein_id="HYY83927.1"
                     /translation="MAELSRLVEGAHRVIIDVSRIERLDTLGAWVLDRTRHELGEKGL
                     QADFRGARPEHRILLDEVAYRGFQPSPPVRKSGFVDFLVDVGRSVHVSGRDFVGGIGF
                     LGALVAAFGRVLSRPGRFRMPSLVHQLEQVAFRGTPIIVLISFLVGCIISQQGIFQLQ
                     RFGATTFVVNLIGILVLRELGVLLTSIMIAGRSGSAFTAEIGSMKMREEIDALRVMGL
                     DPMEVLIVPRILALVIALPILTFISNIAALLGGGVTAWLYADISPEVFLARLQASIQL
                     NTFLVGLIKAPFMALVIGIIASIEGFAVEGSAESLGRHVTASVVKAIFMVIVMDGLFA
                     MFFAAIRY"
BASE COUNT          496 a          885 c          996 g          401 t
ORIGIN      
        1 cttgggcgcg ctgtcgttca ggcgcttggc gaggctggcg gcgtcgcgaa gggtatcgtt
       61 gatggcctgc cggctgtccc cgagcgcctg ggtgaagttg tcgacgttgg cgacgatgcg
      121 cgtcacctgc tggcggtcga ccgcccgcac gaggtcgtcg aggttcgctg ccagggtctc
      181 gagccgggcc gcgaggggcc cgacgcgctc cgcggcctgg ccgacctggg cgaggaagcg
      241 gtcgatgccg ggcgcgttgt cgctcagcgc ctgcgagaag cgctcgacgt tctggaccgt
      301 gcggttgacg gcaccctcgt tgtcgccgac gagccggttc atcttctcaa ggaagtcgtc
      361 ggcgcgccgg gcgaggttgc gcgccgtttc catgaggtcc tggaagtccg aacggtcggc
      421 gaaaatggtc ggcagcggct ggcccggccc ggccgtgagc ggcggcgctc ccggctcgcc
      481 tccagagagc gcgatgctgg cgacgcccgt caggccctgg aactcgagcc gggcgcgggt
      541 atcggtgcgg atcgggatgg cgcggtcgac ctcgatgatg gcgagcaccc ggcgcggatc
      601 ctcgggcagg aggcgcatgt ccgtgacctc accggcccgg atgccgttga acaagacgac
      661 cgagcccttg gtcagccccg acacggagcc cgagaagacg acacggtacg gctggcgccg
      721 ctggctgcct tcgcctccgg agaaccagaa cacgaagccg aacgccgccg cgatcaccgc
      781 gagggtgaac aggccgatga gggcgtagtt ggcgcgcgtt tccattcact tatctcacgg
      841 atgcgccatc catgacggcg cgggcccgct tgccatgaaa ataggctttc aaccagggat
      901 cgtcggaggc gagcatcgtc tccacggtcc ctgtggcgat aatgcggcct ttgctgagcg
      961 cggcgatgcg gtcgcagacc gtataaaggc tgtcgaggtc gtgagttacc atgaaaactg
     1021 taagccccaa agtccgctga agcgtgacga taagctcgtc gaagtcgccc gcgccgatgg
     1081 gatcgaggcc cgacgtcggc tcgtccagga acacgacctc ggggtcgagg gccagcgcac
     1141 gggcgagcga ggcgcgcttg atcatgccgc cggacagctc cgacgggagc ttgtcggcag
     1201 cgtcgggggc caggccaacc atctcgatct tgaggatcgc gagctcgtcg agaaggcgtt
     1261 cggaaagatc gaggtgctcc cgcatcggga gttgcacgtt ctgcttcacg gtgagcgacg
     1321 agaacagcgc accctgctgg aacagcacgc cccagcgccg ctcgacggcc tgtcgcgatg
     1381 ccggcgacaa ggcatcgagg tcctcgccga aaacctcgat ggtgccgccg cgcttaggca
     1441 ggagacccag gatcgtccgc gtcaggacgg acttgccctg accggagccg ccgacaaagc
     1501 cgaggatctc gccgcgatac acatcaaggt cgaggtggtc gagaatgagc cgctcgccga
     1561 acccgacctc gaggtcgcgc acgcggatca cggtctcgcg gtcgcggtcc ggcatcgtgg
     1621 ctgcgcggcg gtcgagcatg cttggtcagt accggatagc ggcgaagaac atcgcgaaca
     1681 gcccatccat cacgataacc atgaagatcg ccttgacgac ggaggcggtc acgtgccggc
     1741 cgagcgactc ggccgagccc tcgacggcga aaccctcgat cgacgcgatg atgccgatga
     1801 cgagggccat gaagggcgcc ttgatgagcc cgacgaggaa cgtgttgagc tgaatgctcg
     1861 cctgcagccg agcgaggaat acctcgggac tgatgtcggc gtagagccag gcggtgacgc
     1921 cgcccccgag cagcgccgca atgttggaga tgaaggtcag gatcggcagc gcgatgacga
     1981 gggcgaggat gcgcgggacg atcagcacct ccatgggatc gagccccatg acgcgcagcg
     2041 cgtcgatttc ctcccgcatc ttcatggacc cgatctcggc cgtgaaggct gagcccgagc
     2101 ggccggcgat catgatcgac gtgagcagca cgccgagttc ccgaagcacc aggatgccga
     2161 tgaggttgac gacgaacgtc gtcgctccga agcgctggag ctggaagatg ccctgctgcg
     2221 agatgatgca tccgacgagg aaggagatca gcacgatgat gggcgtgccg cggaaggcga
     2281 cctgctcgag ctggtgcacg agcgagggca tccggaaacg cccgggccgg gagagcaccc
     2341 ggccgaacgc cgcgacgagc gcgccgagaa agccgatgcc cccgacgaag tcgcgcccgg
     2401 agacgtgcac cgagcggcca acgtccacca ggaagtccac gaacccggac ttgcgcaccg
     2461 gcggagaggg ctggaagccc cgataggcta cctcgtccag gagaatgcgg tgctccgggc
     2521 gggcgccacg gaaatccgcc tgcaggccct tctcgccaag ctcgtggcgg gtccggtcca
     2581 ggacccaggc gccgagggtg tcgaggcgtt cgatgcgcga cacgtcgatg atgacgcggt
     2641 gtgcgccctc gacgaggcgc gacagctcgg ccatgcaggc ctccgtggcg gcggcctggt
     2701 cgacggtcca gcgaccggac agccgggcgc ggaccgcgtc tgcggcttcg tcgaaggtcg
     2761 cttgcggctc gcgcgcga
//
LOCUS       DASQWN010000283         4954 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1040899, whole genome shotgun sequence.
ACCESSION   DASQWN010000283 DASQWN010000000
VERSION     DASQWN010000283.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 4954)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4954)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4954
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1040899"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(85..174)
                     /locus_tag="VE686_05430"
     tRNA            complement(85..174)
                     /locus_tag="VE686_05430"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(138..140),aa:Ser,seq:gga)
     gene            340..663
                     /locus_tag="VE686_05435"
     CDS             340..663
                     /locus_tag="VE686_05435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019404241.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY83928.1"
                     /translation="MFRFLARLIGLVLVAAGFVGIVIDGTRSVANGVLSFTPLGELAY
                     ELFPTRFPLIEPAVTRHLHPYLWDPILLNFFLLPASVLGVVLGLGLLWLGQRPVEAIG
                     YAAGP"
     gene            771..1427
                     /gene="msrA"
                     /locus_tag="VE686_05440"
     CDS             771..1427
                     /gene="msrA"
                     /locus_tag="VE686_05440"
                     /EC_number="1.8.4.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008964369.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008113 - peptide-methionine (S)-S-oxide
                     reductase activity [Evidence IEA];
                     GO_function: GO:0033744 -
                     L-methionine:thioredoxin-disulfide S-oxidoreductase
                     activity [Evidence IEA];
                     GO_process: GO:0006979 - response to oxidative stress
                     [Evidence IEA];
                     GO_process: GO:0030091 - protein repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptide-methionine (S)-S-oxide reductase MsrA"
                     /protein_id="HYY83929.1"
                     /translation="MFFSRKRLDVPSSTDALPGRSSPMPTAERHFVNGQRLQGPYPDG
                     MERAVFGLGCFWGAERKFWQLGDGVFVTAVGYAGGSTPNPTYEEVCSGMTGHNEVVLV
                     VYDPKRISYEDLLKAFWESHDPTQGMRQGNDIGTQYRSGIYVFDEAQRRAAEASKAAY
                     GKVLAARHYGPITTEIRDAGPFYFAEDYHQQYLAKNPGGYCGLGGTGVACPIGTGVAA
                     "
     gene            complement(1511..1711)
                     /locus_tag="VE686_05445"
     CDS             complement(1511..1711)
                     /locus_tag="VE686_05445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008973886.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2934 domain-containing protein"
                     /protein_id="HYY83930.1"
                     /translation="MNRDLDEGLIRERAHALWEADGRPEGCQEEHWYKALMELANSST
                     AKPNSTRARRPKSAGARSKKAA"
     gene            1858..2073
                     /locus_tag="VE686_05450"
     CDS             1858..2073
                     /locus_tag="VE686_05450"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY83931.1"
                     /translation="MTRLNQAVGEAQAQLALGNCATDLLRARTNLQALVPDSPLLASL
                     EDKIRHLRDIQQSARHAPRAEPPFPCF"
     gene            complement(2090..4360)
                     /gene="glgX"
                     /locus_tag="VE686_05455"
     CDS             complement(2090..4360)
                     /gene="glgX"
                     /locus_tag="VE686_05455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009764191.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004133 - glycogen debranching enzyme
                     activity [Evidence IEA];
                     GO_process: GO:0005980 - glycogen catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycogen debranching protein GlgX"
                     /protein_id="HYY83932.1"
                     /translation="MNIPVDPKKAAASLPATLERVAKTRVREGRPYPLGATWDGLGVN
                     FALFSANATKVELCLYDASGTREIDRVELPEYTDEVWHGYLPDARPGTTYGYRVHGPY
                     EPTAGHRFNPNKLLIDPYAKQFVGQVEWNPALFGYRMESGDDLTFDDRDSAPFVPKSR
                     VIDPAFTWGRDRKPHTSWEKTVLYEAHVRGYTMRHPAVAEMYRGTYAGMASKEVLDYL
                     RSLGITALELLPVHTFLDDSYLTEKGLRNYWGYNTIGFFAPARRYAANPEFAFAEFKE
                     MVAHLHEAGIELILDVVYNHTAEGNELGPTLSFKGIDNASYYRLAPERRYYINDTGTG
                     NTVNLSNSRVLQLVMDSLRYWAQEMHVDGFRFDLATILGREPHGFEEDGRFLDACRQD
                     PVLSELKLIAEPWDCGPGGYQVGRFSPGWAEWNDRYRDTVRAYWKGDEGKLPELASRL
                     TASADLFNKRGRKPWASVNFIAAHDGFTLNDLVSYDDKHNEANGEENRDGHSHNLSWN
                     HGAEGPTDDPEIQALRFRQMRNMLATLVLSRGTPMVLAGDEFARTQAGNNNAYCQDNE
                     ISWIDWQAIDTDRAELAKFVQRLLMIRDALPMLRRGRFLTGEFDEELGVKDVAWINPS
                     GNEMTPEQWEEQNARCLGVLLDGRAQESGVRRLGNDATLLLITNSYGGVVPFKLPEAA
                     GGKQWVCLVDTNRPDLDELSRFDFGHSYEVTGRSLLLFILEPARTRRRSTDAERSFQH
                     VIDVVGAGAELALPTR"
     gene            complement(4456..>4954)
                     /locus_tag="VE686_05460"
     CDS             complement(4456..>4954)
                     /locus_tag="VE686_05460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012255890.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="protein adenylyltransferase SelO family protein"
                     /protein_id="HYY83933.1"
                     /translation="ATCFESAYHAGLRRKLGLAMERDGDAALAGDLLSLMTENQADFT
                     LTFRHLADAAAAPEGDEAVRNLFVNPQAYDGWAARWRERLAQEPQDPAERRTAMRAVN
                     PAFIPRNHRVEAMIQAAVQRDEFVPFEELLRVLSRPYEDQPEFARYAVPPEAHERVRA
                     TFCGT"
BASE COUNT          751 a         1621 c         1680 g          902 t
ORIGIN      
        1 cgttcgttgg tggggatagc ggtggggaac ggccgattag cacatcatat tacttaggtt
       61 gcgcaaggac ttacatgtgt gcgctggcgg agggagaggg attcgaaccc tcgatacggt
      121 ttcccgtata cacgcgttcc aggcgtgcgc cttcaaccac tcggccaccc ctccgtcgcg
      181 ttggccgtga tgccggcgca agccccgccg cggcggggcg gttggtgtat agcgcaggcg
      241 tccagcggcg caagtcgagg cgtctggggc cggggcggcc ggcccttgcg tcaccccggc
      301 gatcgtcata cgtccggcga agcttgtccg gggacctcga tgtttcgttt tctcgcgcgc
      361 ctcatcgggc tcgttctcgt cgccgccggc ttcgtcggca tcgtcattga cggcacccgc
      421 tcggtcgcga acggtgtcct ctccttcacg ccactgggcg agcttgccta cgagctcttc
      481 ccgacgcgct ttccgctcat cgagcccgcg gtgacgcggc acctccaccc gtacctctgg
      541 gaccccattc tcctcaactt ttttctcctc ccggcgtcgg tgctgggcgt cgtgctcggg
      601 cttggtcttc tctggctcgg acagcggccc gtcgaagcga tcggttacgc cgcggggccg
      661 tgacgctcag ggcattctag cctcacggga aggtgacgcc gcgggcctcc tcgggcgcgc
      721 ccgcgacgct tacatgacac cctaccttgt cctggtccgg agcgacgctc atgttcttct
      781 cccgcaagcg cctcgatgtc ccgagttcga cggacgcctt gccgggccgc tcgtcgccca
      841 tgccgacggc agagcggcac ttcgtcaatg gccagcgcct gcaggggccg tacccggacg
      901 ggatggagcg cgccgttttc ggtctcggct gcttctgggg cgccgagcgc aagttttggc
      961 agctcggcga cggggtgttc gtcacggccg tcgggtacgc tggcggctcg acccccaatc
     1021 caacctacga ggaggtctgc tccggcatga cgggtcacaa cgaggtcgtg ctcgtcgtct
     1081 acgaccccaa acgcatctcc tacgaggacc tgctcaaggc attctgggaa agtcacgacc
     1141 cgacccaggg catgcgccag ggcaacgaca tcgggacgca gtaccgttcc ggcatctacg
     1201 tgttcgacga ggcgcagcgg cgtgcggccg aagcctccaa ggccgcgtac ggaaaggtgc
     1261 tggccgcgcg gcactacggg ccgatcacga ccgagatccg ggatgcgggc ccattctatt
     1321 tcgccgagga ttatcaccag cagtacctcg ccaagaatcc gggcggctac tgcggacttg
     1381 gcgggaccgg cgtcgcatgc ccgatcggga ccggcgtcgc cgcgtgatcg cgggccagag
     1441 cggtcgcggg ccccacgcgc aggaacggcc tcgccgccgt ccctgccggt gatcccgcgc
     1501 tggatggcgc ttaagcggcc ttcttcgagc gggcgcccgc agacttgggg cggcgtgcgc
     1561 gcgtagagtt cggttttgcc gtcgaggagt tggcgagctc catgagggcc ttgtaccagt
     1621 gctcctcctg gcacccctcc ggcctgccat cggcctccca cagcgcgtgc gcgcgctcgc
     1681 gtatgaggcc ctcgtccaga tcgcgattca tcagtgtctc tccatcagca aaggagggag
     1741 catctggcga tcgcgtggtt aatcggcggt aaacgggcga cgactccagc gaagcttcct
     1801 tagtccggcc gtattgggag cgtgtcgtca aaggcgcctc ttgcaggagg agcgacgatg
     1861 acgcgactca atcaagcagt cggcgaagcg caggctcaac tcgccctggg gaattgcgcg
     1921 acagacctgc tgcgggcccg gacgaatctg caggcgctcg tgcctgattc gcctctgctg
     1981 gcatccctgg aagacaagat ccggcacctg cgggacatcc agcaaagcgc acggcacgcg
     2041 ccccgcgccg agcctccgtt cccctgcttt taggggcgcg ggtttttctt cagcgcgtgg
     2101 ggagcgccag ttcggctccg gcaccgacga cgtcgatgac gtgctggaaa gagcgctccg
     2161 cgtcggtcga acgcctgcgg gtgcgggccg gctccaggat gaagagcagg agcgagcgcc
     2221 cggtcacctc gtagctgtgg ccgaagtcga accgggacag ctcgtcgagg tctggccggt
     2281 tcgtgtcgac gaggcagacc cattgcttgc cgcccgcggc ttccggcagc ttgaacggga
     2341 ccacgccgcc ataggagttg gtgatgagga gcagggtggc gtcgttcccg agcctgcgca
     2401 cgccgctttc ctgggcgcgc ccgtcgagga gcacgccgag gcagcgggcg ttctgctcct
     2461 cccactgctc gggcgtcatc tcgttcccgg aagggttgat ccaggccacg tccttgaccc
     2521 cgagctcctc gtcgaactcg ccggtcagaa accgtccccg gcggagcata ggcagagcat
     2581 ctctgatcat caggagacgc tggacgaact tcgcaagctc ggcgcggtcg gtgtcgatgg
     2641 cctgccaatc gatccaggag atctcgttgt cctgacagta agcgttgttg ttccccgcct
     2701 gcgtgcgcgc gaactcgtcg ccggcaagga ccatcggggt gccgcgcgag agcaccaggg
     2761 tcgccagcat gttgcgcatc tggcgaaagc gcagggcctg gatctccggg tcgtccgtcg
     2821 gcccctccgc gccgtggttc caggatagat tgtgcgagtg cccgtcgcgg ttctcttcgc
     2881 cgttcgcctc gttgtgtttg tcgtcgtacg agacgaggtc gttcaaggtg aagccgtcgt
     2941 gcgccgcgat gaagttcacg gacgcccatg gcttgcgccc gcgcttgttg aacaggtccg
     3001 ccgatgcggt gagccggctc gcgagttcgg gcagcttgcc ttcatcaccc ttccagtagg
     3061 cgcgaacggt gtcgcggtag cggtcgttcc actccgccca cccaggcgag aagcgcccga
     3121 cctgatagcc gcccggccca cagtcccagg gctccgcgat gagcttgagc tcgctcaaga
     3181 ccggatcctg gcggcacgca tcgaggaagc gtccgtcctc ctcgaacccg tgcggctcgc
     3241 gtccgaggat cgttgcgagg tcgaagcgga agccatcgac gtgcatctcc tgcgcccaat
     3301 agcgcaggct gtccatgacg agctgcagga cgcgggagtt gctgaggttg acagtgttcc
     3361 cggtgccagt gtcgttgatg tagtagcgcc gctccggcgc gagccggtaa tacgacgcgt
     3421 tgtcgatgcc tttgaacgac agggtcggcc cgagctcgtt gccttcggcg gtgtggttgt
     3481 agacgacgtc gaggatcagc tcgatcccgg cctcgtgcag gtgggccacc atctccttga
     3541 actcggcgaa ggcgaattcc gggtttgcgg catagcggcg ggcgggcgcg aagaagccga
     3601 tcgtgttgta gccccagtaa ttgcgcaggc ctttctcggt caggtagctg tcgtccagga
     3661 aggtgtggac cggcaggagc tcgagagcgg ttatcccgag ggaccgcaag tagtcgagca
     3721 cctccttcga agccatgccc gcgtaggtgc cgcgatacat ctccgccacg gccgggtgcc
     3781 gcatggtgta gccgcgcacg tgggcttcat agaggacggt cttctcccat gaggtgtgcg
     3841 gcttgcgatc gcgtccccac gtgaaggcgg gatcgatgac ccgcgacttc ggcacgaacg
     3901 gggcgctgtc gcggtcatcg aacgtgagat cgtcgccgct ctccatgcga tacccgaaga
     3961 gcgccgggtt ccattcgacc tggcccacga actgcttggc gtaagggtcg atgaggagct
     4021 tgttcggatt gaaccggtgc ccggccgtcg gctcgtaggg accgtgcacg cggtagccgt
     4081 aggtggttcc cggccgcgcg tccggcaggt agccgtgcca gacttcgtcg gtgtactccg
     4141 gcagttcgac ccgatcgatc tcccgcgtgc cgcttgcgtc gtagaggcac agttcgacct
     4201 ttgtggcgtt ggccgagaac agggcgaagt tcacgccgag gccgtcccag gtcgcgccga
     4261 gcggatacgg ccgcccttcg cgcacgcgcg tcttcgctac gcgttccagg gtcgccggca
     4321 acgaagcggc ggccttcttc ggatcgaccg ggatattcat gctgaactcg acggattggg
     4381 cgtgaggcgt ccccgggcca taacgcggca cctaagtgga aggtccggca accccgtatt
     4441 ttgacgcggc gccgcttacg tcccgcagaa ggtggcgcgg acgcgctcgt gggcctcggg
     4501 cggtacggcg tagcgcgcga actcgggctg gtcctcgtag ggtcgggaaa ggacccgcag
     4561 aagctcctcg aacggcacaa actcgtcgcg ctgcacggcc gcctgaatca tggcctcgac
     4621 gcgatgattg cgggggatga aggctggatt aacggcgcgc atggcggtgc gccgctcagc
     4681 ggggtcctgc ggctcctgcg ccaggcgctc gcgccaccgc gcggcccagc cgtcgtaggc
     4741 ctgcgggttg acgaagaggt tgcggaccgc ctcgtcccct tcaggggccg ccgccgcgtc
     4801 ggcaagatgg cggaatgtca gcgtgaagtc tgcctggttc tcggtcatca ggctcaggag
     4861 atcgcccgcg agcgccgcat cgccgtcgcg ctccatcgcc aagccgagct tgcgccgcag
     4921 gccggcgtgg taggcgctct cgaagcacgt cgcg
//
LOCUS       DASQWN010000284         3570 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_50078, whole genome shotgun sequence.
ACCESSION   DASQWN010000284 DASQWN010000000
VERSION     DASQWN010000284.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 3570)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3570)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3570
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_50078"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..658
                     /locus_tag="VE686_05465"
     CDS             <1..658
                     /locus_tag="VE686_05465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011662446.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HYY83934.1"
                     /translation="SGTDGFGKSMHDQCVKVAPTYGLEIVADESYGPRDSDMTAQLTK
                     IKNTASVQVVVNPGFGQGPAIVTRNYAQLGMTNLPLYQSHGVASKSFIELAGAAAEGV
                     RLPAAALLVAEKLPDTDPQKKVVVDYKQTYEKATGQPVSTFGGHAYDGLFMLVEAMKR
                     ANATDPKKIRDEIEKTKGFVGTGGIVNMSATDHLGLDLSAFRMLTIKGGDWAVVQPGT
                     "
     gene            842..1714
                     /locus_tag="VE686_05470"
     CDS             842..1714
                     /locus_tag="VE686_05470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002711906.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0015803 - branched-chain amino acid
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid ABC transporter
                     permease"
                     /protein_id="HYY83935.1"
                     /translation="MPEFLQFLASGLTVGAVYALVALGFTLVYNASDVVNFAQGEFVM
                     IGGMGTVFLSAAGVPLPLAAVLAVAAAVVVGLLLHRLAIEPARGASAVTLIIITIGAS
                     IFLRGVAQVVFDKQFHKLPAFSGDAPVNLFGAAVQPQSFWVVGGAATIVLALTLFLER
                     TVLGKAVRATAANRLAARLVGIDTAVVMALAFGVSAAIGAVAGVLVTPITLTSYDIGV
                     LLALKGFAAAMLGGMGNPVGAVLGGLIVGLLEAFSAGYLSSNYKDAVAFLTILLVLLV
                     APQGLLGRAGTERV"
     gene            1720..2661
                     /locus_tag="VE686_05475"
     CDS             1720..2661
                     /locus_tag="VE686_05475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003498146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0015803 - branched-chain amino acid
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid ABC transporter
                     permease"
                     /protein_id="HYY83936.1"
                     /translation="MGRVSPRVATLVVLAAVIALLPLVFPSAYYFRVAALVWVSALAA
                     LGLNILMGQAGQVSLGHAGFFGIGAYGAAVGPAHLGLPPLPAALAAAVLSAVIAFAVG
                     RPILRLKGHYLAIATLGLGVLIALVITTENRWTGGPDGMRVARVELFGFRVAGSETWY
                     WISGGLLLVGAWLAGNLQESPTGRAFRALHESEVAARVVGVDVARLKLRAFVIAAVYG
                     SVAGSTMALMNGFVTPDQAGFLHSVELVTMVVVGGLGSVAGSIVGAAVLGTLPQVLTV
                     FQEYEHLLLGLVIMLTMIFLRQGLVPGLVALARRRSA"
     gene            2658..3440
                     /locus_tag="VE686_05480"
     CDS             2658..3440
                     /locus_tag="VE686_05480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012112909.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HYY83937.1"
                     /translation="MSVLAVEDLGIAFGGVKAVDGVAFAVSGGEVLSIIGPNGAGKTT
                     LFNLVSGVYRANRGRVALLGDDVTGATPEALAARGLSRTFQNLQIFARMSAVENVMVG
                     RHLREHTGILADLFGLPSVTRQNRATRAAAMDRLEAVGLVADADRPAGALPYGALKRL
                     EIARALASEPKVLLLDEPAAGCNAVETQEIERLVRRIADTGVAVVLVEHDMKLVMRIS
                     DRVLVLDRGRPLAEGPPQVVRENPAVIEAYLGRHAARETAHG"
BASE COUNT          451 a         1305 c         1241 g          573 t
ORIGIN      
        1 ctcgggcacc gacggcttcg gcaagtccat gcacgaccag tgcgtcaagg tcgcgccgac
       61 gtacgggctc gagatcgtcg ccgacgagag ctacgggcct cgcgacagcg acatgacggc
      121 ccagctcacc aagatcaaga acaccgcgag cgtgcaggtg gtggtgaacc ccggcttcgg
      181 ccagggcccg gccatcgtca cccgcaacta cgcccagctc ggaatgacca acctgcccct
      241 gtaccagagc catggcgtcg cctcgaagag cttcatcgag cttgccggtg ccgcggccga
      301 gggcgtgcgc ctgccggccg ccgcgctcct tgtcgccgag aagctgcccg acaccgaccc
      361 gcagaagaag gtcgtggtcg actacaagca gacctacgag aaggcgacgg gccagccggt
      421 ctcgaccttc gggggccacg cctacgacgg gctgttcatg ctcgtcgagg cgatgaagcg
      481 cgcgaacgcc accgacccga agaagatccg cgacgagatc gagaagacca agggcttcgt
      541 cggcaccggc ggcatcgtca acatgtcggc gaccgaccac ctcggcctcg acctctcggc
      601 cttccgcatg ctgaccatca agggcggcga ctgggccgtg gtccagcccg ggacgtgacg
      661 ccggagggcc cccgcgccta tccctccccg cgaggggagg gcggagacgg gcgtgtcagc
      721 gcccgcccgg gtggggcgaa cacctcggtg ctcaacgtac cggctccggg cttccgcccc
      781 accccggtcg cgcctgcagg cgcgactcgc cctctcctcg cggggaggga tgggcgccga
      841 catgcctgag ttcctgcagt tcctggcctc gggcctgacg gtcggggccg tctatgccct
      901 cgtcgccctc ggcttcacgc tggtctacaa cgcctccgac gtggtgaact tcgcgcaggg
      961 cgagttcgtc atgatcggcg gcatggggac ggtgttcctc tcggccgccg gcgtgccgct
     1021 gccgctcgcg gccgtgctcg ccgtggcggc ggcggtggtc gtcgggctcc tgctccatcg
     1081 cctggcgatc gagcccgcgc ggggcgcctc ggcggtgacc ctgatcatca tcaccatagg
     1141 tgcctcgatc ttcctgcgcg gggtggcgca ggtcgtgttc gacaagcagt tccacaagct
     1201 accggcgttc tcgggcgacg cgcccgtgaa cctgtttggc gccgccgtgc agccgcagag
     1261 tttttgggtc gtcggcggcg cggccaccat cgtgctggcg ctgacgcttt tcctggagcg
     1321 caccgtgctc gggaaggcgg tgcgggcgac ggcggcgaac cgcctcgcgg cgcggctcgt
     1381 cggcatcgac accgccgtcg tcatggccct cgccttcggc gtgtcggccg ccatcggtgc
     1441 ggttgccggc gtgctcgtca cgccgatcac gctgacgagc tacgacatcg gtgtgctgct
     1501 ggcgctcaag ggcttcgcgg cggcgatgct cggcggcatg ggcaacccgg tcggcgcggt
     1561 gctgggcggt ctcatcgtcg gcctgctcga ggccttcagc gccggctacc tcagctcgaa
     1621 ctacaaggat gcggtcgcct tcctgaccat cctcctggtg ctgctcgtcg cgccgcaggg
     1681 gcttctcggc cgcgccggca ccgagcgggt gtgagcggga tggggcgcgt ctctccgcgc
     1741 gtcgcgacgc tcgtggtcct cgccgccgtc atcgcgctcc tgccgcttgt cttcccatcg
     1801 gcctactact tccgtgtcgc cgccctggtg tgggtgtcgg cgctggctgc actgggcctc
     1861 aacatcctca tggggcaggc gggacaggtg agcctcgggc atgcgggctt cttcggcatc
     1921 ggggcctatg gcgctgccgt cggccccgcc cacctcggcc ttccgccgct gcccgcggcg
     1981 ctcgctgcgg cggtcctctc cgccgtgatc gcctttgcgg tcgggcgccc gatcctgcgc
     2041 ctcaagggac actacctcgc catcgcgacg cttggcctcg gcgtgctcat cgccctcgtc
     2101 atcaccaccg agaaccgctg gaccggcggc ccggacggca tgcgcgtcgc ccgcgtggag
     2161 ctcttcggct tccgagtggc cggctcggag acctggtact ggatctccgg cggcctcctc
     2221 ctcgtgggcg cgtggctcgc gggaaacctc caggagtcgc ccactggccg cgccttccgc
     2281 gccctgcacg agagcgaggt cgcggcccgc gtcgtcggcg tcgacgtcgc ccgcctcaag
     2341 ctgcgcgcct tcgtcatcgc cgccgtctac ggctccgtcg cgggctccac catggcgctc
     2401 atgaacggct tcgtgacccc cgaccaggcc ggcttcctgc actccgtcga gctcgtcacc
     2461 atggtggtcg tcggcggcct cggctcggtg gccggcagca tcgtcggcgc ggcggtgctc
     2521 gggaccctgc cgcaggtgct gaccgtgttc caggagtacg agcacctgct gctcggcctc
     2581 gtcatcatgc tgaccatgat tttcctgcgg cagggtctcg tgccggggct cgtggcgctt
     2641 gcgcggcgga ggtcggcgtg agcgtgctgg ccgtcgagga cctcggcata gccttcggcg
     2701 gcgtcaaggc cgtcgacggc gtcgccttcg cggtctcggg cggcgaggtc ctgtcgatca
     2761 tcggcccgaa cggggccggc aagacgaccc tgttcaacct cgtctcgggc gtctaccggg
     2821 cgaaccgcgg ccgcgtcgcg ctcctcggcg acgacgtcac cggcgcaacc cccgaggcgc
     2881 tcgcggcgcg gggcctgtcg cgcaccttcc agaacctgca gatcttcgcc cgcatgagcg
     2941 cggtcgagaa cgtcatggtg gggcggcatc tgcgcgagca caccggcatc ctcgccgacc
     3001 tcttcggcct gccctccgta acgcggcaga accgcgcgac ccgagccgcc gccatggacc
     3061 ggctcgaagc ggtcgggctc gtcgccgatg cggaccgccc ggcgggcgcg ctcccctatg
     3121 gcgcgctgaa gcgcctcgag attgcccggg cgctcgcgag cgagcccaag gtgctgctcc
     3181 tcgacgagcc ggcggcgggc tgcaatgccg tcgagacgca ggagatcgag cgtctggtgc
     3241 gccgcatcgc cgatacgggc gtcgcggtgg tgctcgtcga gcacgacatg aagctcgtca
     3301 tgcgcatctc ggaccgcgtc ctcgtcctcg accgcggccg tcccctggcg gaaggcccgc
     3361 cgcaggtcgt gcgcgaaaac cccgccgtca tcgaagccta cctcggccgc cacgccgccc
     3421 gggagacggc acatgggtga agcgggctta tccctccccc gctcgcgtca gcgagtgtgg
     3481 ggagggacga ctcgggccaa aggcccgagc gagggtgggg ggctagtcgg cttggcctcg
     3541 acgggcggag cggcggaagc agccctcacc
//
LOCUS       DASQWN010000285         2213 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1240074, whole genome shotgun sequence.
ACCESSION   DASQWN010000285 DASQWN010000000
VERSION     DASQWN010000285.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2213)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2213)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2213
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1240074"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..183
                     /locus_tag="VE686_05485"
     CDS             <1..183
                     /locus_tag="VE686_05485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010968215.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2Fe-2S iron-sulfur cluster-binding protein"
                     /protein_id="HYY83938.1"
                     /translation="AVAVLDEIKAGFPSHTSADLTAQPQVTPAEIRERMSGNLCRCGA
                     YSNIVEAITEVAGRQG"
     gene            180..1130
                     /locus_tag="VE686_05490"
     CDS             180..1130
                     /locus_tag="VE686_05490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008875026.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="xanthine dehydrogenase family protein subunit M"
                     /protein_id="HYY83939.1"
                     /translation="MKPFTYERANTPAEAAAAVARTPGAKFIAGGTNLLDLMKLQIEA
                     PTHLVDVNGLRLDTIEPTPDGGLRVGALVRNTDLAADERVRREYGVLSRALLAGATGQ
                     LRNKATTAGNLLQRTRCPYFYDTAQPCNKREPGSGCSALDGVSRQLAVIGSSEACIAT
                     NPSDMAVAMRALDAKIETIKPDATTRSIPIADFHRLPGDTPHIETVLDRGELITAVTL
                     PQPAGGKQFYRKVRDRASYAFALVSVAAIVQRDGTGRVALGGVAHKPWRAEAAEAELP
                     QGAKAVSAKLFAGAKPTAENAFKLPLAERTLAAVMAEART"
     gene            1136..>2213
                     /locus_tag="VE686_05495"
     CDS             1136..>2213
                     /locus_tag="VE686_05495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003598436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin cofactor-binding domain-containing
                     protein"
                     /protein_id="HYY83940.1"
                     /translation="MKFDTPATSNPIDQLKVVGKPTDRIDGKYKTTGTAPYAYERHDV
                     AANQAYGFVLGSGIAKGRVAAMAIEEAKASPGVLAIVTTLDTPRLGRGMLNAAYLFGG
                     PDIQHYHQAIAVVVAETFEQARAAAHLIGVDYVREPGKFDLAVEAKSAPLVGADSGEG
                     SGAPPVHEVGDFDGGFAAAPLKLDETYTTPDESHAMMEPHATIAAWEGDRLTLWTSNQ
                     MIAWGKGSIAKGRIAAMHLEEAKTAPGVLAIVTTLDMPRLERGKMNVASLFGGPVIQH
                     YHQAIAVVVAETFEHARAAAYLIRVDYQPEAGKFDLATEAPNAPLVGDDSGEGSSGPP
                     EVRVGDFEGAFEAAAVRLDESYTTP"
BASE COUNT          412 a          765 c          722 g          314 t
ORIGIN      
        1 gccgtggctg tgctcgacga gatcaaggcg ggcttcccaa gccacacgag cgccgacctg
       61 accgcacagc cgcaagtgac acctgccgag atccgcgagc gcatgagcgg caatctctgc
      121 cgctgcggcg cctactccaa catcgtcgag gcgatcaccg aagttgccgg gaggcaggga
      181 tgaagccctt cacctacgag cgcgcgaaca cccccgctga agcggccgca gcagtcgcgc
      241 ggacgcccgg cgcgaagttc atcgcgggcg gcacgaactt gctcgatctg atgaagctcc
      301 agattgaggc cccaactcat ctcgttgacg tgaacggtct gcgcctcgac acgatcgaac
      361 ccacaccgga cggcggtctc cgcgtcggcg cgctcgtccg caataccgat cttgccgcgg
      421 atgagcgggt gcgccgagag tacggcgtgc tctctcgagc gctcctcgcg ggcgctaccg
      481 gccagctccg taacaaggcg acgaccgccg gcaacctgct ccagcggacg cgctgcccct
      541 acttctacga tacggcgcag ccctgcaaca aacgcgagcc gggctcgggc tgctcggccc
      601 tcgacggggt cagccgtcaa ctcgccgtca tcggatcgag tgaggcgtgc atcgcgacca
      661 atccgtccga catggccgtg gcgatgcgcg cactcgatgc caagatcgag accatcaagc
      721 ctgacgcgac gacccggtcc attccgatcg ccgacttcca tcgccttccg ggcgacacgc
      781 cccatatcga gacggtgctg gaccgcggcg agctgatcac cgcggtgacg ctgccgcagc
      841 cagccggcgg gaagcaattc tatcgcaagg tccgggaccg cgcgtcctac gccttcgcgc
      901 tcgtctcggt tgccgccatc gttcagaggg acggcaccgg cagggtcgcg ctaggcgggg
      961 tcgcgcacaa gccgtggcgc gccgaagcgg cagaagccga gctgccacaa ggtgccaagg
     1021 cggtgtcggc caagttgttc gccggcgcga aaccgaccgc cgaaaacgca ttcaagctgc
     1081 cgctcgcaga acgcacgctc gccgcggtga tggctgaagc gaggacctga tcatcatgaa
     1141 gttcgacact cccgcgacca gcaaccccat cgaccagctc aaagtggtcg gcaagccgac
     1201 cgaccgcatc gatggcaagt acaagaccac cggcaccgct ccctacgcgt acgagcggca
     1261 cgacgtcgcc gcgaaccagg cctacggatt cgtcctcggg tcgggcatcg ccaagggccg
     1321 ggtcgcggcc atggccatcg aggaggcgaa agcatcgccc ggcgtcctgg cgatcgtgac
     1381 gacgctcgac acgcctcggc ttggccgcgg catgctgaac gccgcctacc tgttcggcgg
     1441 gcccgatatc cagcactacc accaagcgat cgcggtcgtc gtggcggaaa ccttcgagca
     1501 agcgcgagct gcggcgcacc taataggcgt cgactacgtt cgcgaacccg gcaagttcga
     1561 cctcgccgtg gaggcgaaga gcgcgccgct tgtaggcgcc gacagcggcg aggggagcgg
     1621 ggccccgcct gtgcacgagg tcggggattt cgacggcggg ttcgctgctg cgccgctaaa
     1681 gctcgatgag acctacacga cccccgacga gagccacgcc atgatggagc cgcacgccac
     1741 aatcgcggca tgggagggcg atcggctgac gctctggaca tcgaaccaga tgatcgcctg
     1801 gggcaaaggc agcattgcca aaggccgcat cgctgccatg cacctggagg aggccaagac
     1861 ggcgccaggc gttctggcga tcgtcacgac gctcgacatg ccccgattgg agcgcggcaa
     1921 gatgaatgtt gcctccctgt tcggcgggcc ggtcattcag cattaccacc aagcgatcgc
     1981 tgtggtcgtc gcggagacct tcgagcacgc ccgggccgcg gcctacctga tccgtgtcga
     2041 ctaccagccc gaggcgggta agttcgacct cgccactgag gcgccgaacg ccccgcttgt
     2101 tggcgacgat agcggcgagg gcagcagcgg acctcctgag gtccgcgtcg gcgactttga
     2161 gggtgcgttc gaggcggcgg cggtgaggct cgacgaaagc tacacgaccc ccg
//
LOCUS       DASQWN010000286         3674 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_222385, whole genome shotgun sequence.
ACCESSION   DASQWN010000286 DASQWN010000000
VERSION     DASQWN010000286.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 3674)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3674)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3674
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_222385"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(176..2223)
                     /locus_tag="VE686_05500"
                     /pseudo
     CDS             complement(176..2223)
                     /locus_tag="VE686_05500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003597279.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="protein meaA"
     gene            2466..>3674
                     /gene="ccrA"
                     /locus_tag="VE686_05505"
     CDS             2466..>3674
                     /gene="ccrA"
                     /locus_tag="VE686_05505"
                     /EC_number="1.3.1.85"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007563238.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043880 - crotonyl-CoA reductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="crotonyl-CoA carboxylase/reductase"
                     /protein_id="HYY83941.1"
                     /translation="MAVQALKTAGGPKGLYELGEIPPLGHVPEKMYAWAIRKERHGPP
                     EDAMQVEVVPTWSIGDDEVLVFVMAAGVNYNGVWAALGQPVSTLDVHKQPYHVAGSDA
                     SGIVWAVGAKVKRWKVGDEVVVHCNQDDGDDEECNGGDPMFSPSQRIWGYETPDGSFA
                     QFCRVQSRQLMPRPRHLTWEESACYTLTLATAYRMLFGHQGHRMRPGDNVLVWGASGG
                     LGVFGVQLCAASGANAIGIISDETKRDYVMQLGAKGVINRKDFNCWGQLPKVNSPEYT
                     AWAGEARKFGKAIWDITGKKDVDIVFEHPGEQTFPVSTLVVKRGGMVVFCAGTTGFNL
                     TFDARYVWMRQKRIQGSHFAHLKQAAAANQFVIDQRIDPCMSEVFPWDKIPFAHTKMW
                     KNEHAPGNMAV"
BASE COUNT          585 a         1252 c         1260 g          577 t
ORIGIN      
        1 cctcgacggc ctctcgaacg gggccgagca gatcgcgctg cgcgccgcgc gctgaccgct
       61 ccggcagcgc accgcgccta gaatgatgat gatgcgcatt tcgcgcggaa ccgagtccct
      121 cttgcgatga tgatgatgcg cagtaatcgt cttgcgcccc ggacggctca agatgttaga
      181 ggggagcggc tgccggcctg cgctgtccgg ctcccgtgcg ccgcgggctc ggcgaaggct
      241 cggacggctg ccgatcgagg gaccggcgca ccaccttcac gaggtctccc atgatggcgt
      301 ccagcgagaa atccttcggc gtatagacgg ccgagacccc catgttgcgc aggacgttgt
      361 cgtcctcggc cgagatgatg ccgccgacaa ccaccgggac gtgatcgagc cctcgaggcg
      421 caggcgtgcc atgacctcgc gcacgagggg cacgtgggag cccgacagga tcgagaggcc
      481 gatcacgtgg gcgccggtct cgcgcgcgtt ggcgacgatc tcggccggag tctggcggat
      541 gccgtcgtag gtcacctcca tgccgacgtc gcgggcgcgc agggcgatct gctcggcccc
      601 gttcgagtgg ccgtcgaggc cgggcttgcc gacgagcatg cgcggcgtag cgccgagcgt
      661 ctgcgcgagg tcggcgacca tcaggcgcag ctcctgcgtg gcgcccgccg tggcggtgtc
      721 gacggaaaca cccgtcggcg cgcgatattc gccaaagacg ccgcgcaagg cctcgcccca
      781 ttcgcccgtg gtcacccccg ccttggcgca ggcgatcgag gccggcatga cgctgcggcc
      841 ctcgcgggcg gcggcctcga gttccgcgag cgccgcctcg gcggcggcgc cgtcgcgttg
      901 cgcgcgccac gcccggatgc ggtgcaccgc ctccatctcg accgtctcgg gcacgctcag
      961 gaaggcgccc tccccggtca tcaagggcga aggctcgccc tgcgtgtagc gattgacgcc
     1021 gacgacgacc tgctcgccgg actcgatggc ggcaaggcgc tttgcgttcg actcgacgag
     1081 agcccgcttc aaggcacccg tgtcgacggc ggcgctcgcg ccgcccatgg cgtcgatgcg
     1141 ggcaagctcg gcacgcgccg cgtccttgag ctcggcgacc ttggcctcga tcaccttcga
     1201 gccgtcgaac acgtcctcgt actcgagcag gtcggtctcg taggcgagga tctgctgcat
     1261 gcgcagcgcc cactgctggt cccacgggcg cggcaggccg agcgcctcgt tccacgccgg
     1321 cagctgcacc gcccgcgcgc gggcccgctt cgacagcgtc acggccagca tctcgatcat
     1381 gatgcggtgg acgttgttct ccggctgctg ctcggtgagg ccgagcgagt tcacctggac
     1441 gccgtagcgg aacatgcgct tcttcgggtc agtcacgccg tagcgctctc gcgtgatctc
     1501 gtcccatagc tccgcaaagg cgcgcagctt gcacagctcc gtgatgaagc gcagtcccgc
     1561 gttgacgaag aacgagatgc ggccgaccac gtcctcgagc gtgccttccg gcacctcgcc
     1621 cgatgccacg acggtgtcga gcaccgcgca ggcggtggcg agcgcgaacg acagctcctg
     1681 gacgggcgtc gctccggcct cctgcaggtg gtaggagcag acgttcatcg ggttccactt
     1741 cggcatctcg cgcgtcgtga acaggatcac gtccttcgtc agatccagcg agggcttggg
     1801 cgggaacacg taggtgccgc gggagaggta ctccttgatc aggtcgttct gcgtcgtgcc
     1861 ctgcagggcg gcgcgcggcg cgccctgctc gtcggcaacg gcgatgtaga gcgcgagcag
     1921 ccacggcgcc gtggcattga tggtcatcga ggtgttcatg gtctcgaggg ggatgtcctc
     1981 gaacaggctc cgcatgtcgc cgatgtggga gatcgcgacg cccaccttgc cgacctcgcc
     2041 cttggcgagc tcgtggtcgg ggtcgtagcc ggtctgcgtc ggcagatcga aggcgaccga
     2101 aaggccggtc tgcccgttgg ccaggttctt gcgatagagc gcgttcgact cggcagccgt
     2161 ggaatggccg gcataggtcc ggaagatcca gggcttgtcc cgggtcgccg atcgctcgct
     2221 catgtgatgc tccgcgccgc catcgtggtg caatgcggca tggctcaagc tcgttccacc
     2281 cccaggcgca tcctgtcaac gcggaaggcg ggacagcgag cctgacccaa aaccctcaat
     2341 gtcgagggaa actcgcggcg ggacccaagc gttgccgcac gcagacttcc ccactaacgt
     2401 cctatgttgc ggcgcagcaa tcgcgcccat agtatcggcg ggacagctca aggcgagggc
     2461 caacgatggc ggttcaggcg ctcaagacag cgggcgggcc gaagggcctg tacgagctcg
     2521 gcgagatccc gccgctcggc cacgttccgg aaaagatgta cgcctgggcg atccgcaagg
     2581 agcgccacgg cccacccgag gacgccatgc aggtcgaggt cgtgccgacc tggtccatcg
     2641 gcgacgacga ggtgctggtg ttcgtgatgg cggcgggcgt caactacaac ggcgtctggg
     2701 cggcgctggg ccagcccgtc tccaccctcg acgtgcacaa gcagccctat catgtggcgg
     2761 ggtcggacgc gtccggcatc gtgtgggccg tcggcgccaa ggtgaagcgc tggaaggtcg
     2821 gtgacgaggt cgtggtccac tgcaatcagg acgacggcga cgacgaggag tgcaacggtg
     2881 gcgacccgat gttctcgccg tcccagcgca tctggggcta cgagacgccg gacggctcct
     2941 tcgcccagtt ctgccgcgtg cagtcacgcc agctcatgcc gcgtccgcgc cacctcacct
     3001 gggaggagtc ggcctgctac accctcaccc tggcgacggc ctaccgcatg ctcttcgggc
     3061 accagggcca tcgcatgcgg cccggcgaca acgtgctggt gtggggcgcg agcggagggc
     3121 tcggcgtctt cggcgtgcag ctctgcgccg cgagcggagc caacgccatc ggcatcatct
     3181 cggacgagac caagcgcgac tacgtcatgc agctcggcgc caagggcgtc atcaaccgca
     3241 aggacttcaa ctgctggggc cagctgccga aggtgaactc gcccgagtac acggcctggg
     3301 ccggcgaagc gcgcaagttc ggcaaggcca tctgggacat cacggggaag aaggacgtcg
     3361 acatcgtctt cgagcatccc ggcgagcaga catttccggt ctcgacgctg gtcgtgaagc
     3421 gcggtgggat ggtggtgttc tgcgccggca ccaccggctt caacctgacc ttcgacgccc
     3481 gctacgtctg gatgcggcag aagcgcatcc agggctccca cttcgcccac ctcaagcagg
     3541 ccgccgccgc gaaccagttc gtcatcgacc agcgcatcga cccctgcatg tccgaggtgt
     3601 tcccctggga caagatcccg ttcgcgcaca ccaagatgtg gaagaacgag cacgcgcccg
     3661 gcaacatggc cgtc
//
LOCUS       DASQWN010000287         2219 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1240394, whole genome shotgun sequence.
ACCESSION   DASQWN010000287 DASQWN010000000
VERSION     DASQWN010000287.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2219)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2219)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2219
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1240394"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..432)
                     /locus_tag="VE686_05510"
     CDS             complement(<1..432)
                     /locus_tag="VE686_05510"
                     /inference="COORDINATES: protein motif:HMM:NF012981.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016301 - kinase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="diacylglycerol kinase family protein"
                     /protein_id="HYY83942.1"
                     /translation="MTAAIAGEQQRSRLKAELAEAIRRERRAVLIVNTRSRRGARAYS
                     EAKRLMQQSGLALDAAYPVRDPARLREVVAQAVAQGHRFIVVGGGDGTISFAVDAFAY
                     RDVVFGLLPLGTANSFARTLSIPLDLAGAVAVLAGGKVVDID"
     gene            complement(597..1376)
                     /locus_tag="VE686_05515"
                     /pseudo
     CDS             complement(597..1376)
                     /locus_tag="VE686_05515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019998075.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
     gene            complement(1459..1725)
                     /locus_tag="VE686_05520"
     CDS             complement(1459..1725)
                     /locus_tag="VE686_05520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009493417.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BolA family protein"
                     /protein_id="HYY83943.1"
                     /translation="MKLSDWIARTLEERLQPTRLAVLEESDQHIGHGGWREGGETHFR
                     IDIVSEAFSGKSRVERHRLVNDALKGAFERGLHALAIQAKAPGE"
     gene            1810..>2219
                     /locus_tag="VE686_05525"
     CDS             1810..>2219
                     /locus_tag="VE686_05525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020092684.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone DnaJ"
                     /protein_id="HYY83944.1"
                     /translation="MDLNSPFFDRIRIKPACDEPREAADPACDRTGCAATGLYRAPKG
                     RAREGQYWRFCLDHVREYNASYNYFDGMTDDAVVAYQKDAVIGHRPTWSMGVNPTAQG
                     GSERPEGPVRDWAYVDPLGILDAETVKARRAAPEP"
BASE COUNT          325 a          778 c          756 g          360 t
ORIGIN      
        1 atcgatgtcg acgaccttgc cgccggcgag cacggcgact gcgcccgcga gatccagagg
       61 aatgctcagg gtccgggcaa agctgttggc tgtcccgagc ggcaggagcc cgaacacgac
      121 atcgcggtag gcgaaagcat cgaccgcgaa gctgatcgtg ccgtctccgc ccccgactac
      181 gatgaagcgg tggccctggg cgacggcctg ggcgacgact tcgcgcagcc gcgcaggatc
      241 cctgacgggg taggcggcat cgagggcgag gccgctctgc tgcatcagcc gcttcgcttc
      301 gctgtaggcg cgcgcgccgc ggcgggagcg cgtgttgacg atgaggacgg cgcgccgctc
      361 ccgcctgatc gcctccgcca gctccgcctt gagccgcgac ctttgctgtt ctccggcgat
      421 tgcagcggtc actggtatcc ggccgccctg agccggcgtt cgtcgtaggc gtcgtcgccc
      481 ccggtcctgc cgagcgccca cgcgaggcca tagccggcaa gcccggccac cagcagtgcg
      541 ccgagcgaat attgcgccac ttggcggatg ccgccgctgc cgttgcttct cggcaccccg
      601 gaccccggct ccgccatgct gcgatgctgc tcggcgagaa ggccggcggg agtgacggag
      661 gcgagagccg tgctgacctt gttggtccag ccgctcacga tgtcgccgtc tccgcgcatc
      721 atcgcgtcga agccggtttt cgccacgtcg gcggggtcct ccttcgacga gcgtccgacc
      781 ttggtgtcca tcatgtcggc gcgctcgaag aactcggtct cggtcgcacc gggcatgagg
      841 caggtgaccg caactccgct gtccttgagc tcgttgcgca gcgcgaacga gaagctgtcg
      901 atgaaggctt tcgtcccgtt gtagacggcg tggaaggtgc ccgggatgaa gcccgcgatc
      961 gacccggtca gaaggatgcg gccctcgccg cgagcccgca tgtcgcggcc gaccttctgg
     1021 accaggtaga tcgtccccgt gatgttggta tcgacgacgt ggcggacggc cgtgaagtcc
     1081 tggtcgagga aggcgcggcc gagcccgtgg cccgcattgg ccaggagggc ggcaacgggc
     1141 cggccgcgaa tggcggcgta gagcttgtcg accccctcga gcgtcgcaag gtccgcctcg
     1201 accggctcgg cttcgacacc gagcgcgcgg aaggcctgcg cggcctcggc gatcttgcgc
     1261 tggtcggccg ctacgacgag gtcgaagccg ttcctggcgc agagcatggc gagttcgtag
     1321 ccgatgccgg cggaagcgcc ggtcacgacg gcgagggggc gtgatgtggc tggcatcgga
     1381 gtcccgggtt cggttcgacc aacaacaccc gagcgccgct ttcgtttctc cgcgcccgcg
     1441 gaggcccccg gagtacccct actcgcccgg cgccttcgcc tggatcgcca acgcgtggag
     1501 gccgcgctcg aacgcgcctt tcagggcatc gttgaccagg cggtggcgct cgacccggct
     1561 cttgccggaa aatgcctccg acacgatatc aatgcggaaa tgcgtctcgc cgccttcccg
     1621 ccagccgccg tggccgatgt gctggtccga ttcttccagg acggcgagac gggtcggttg
     1681 caggcgctcc tcgagcgtcc gagcgatcca atcgcttaac ttcatccgag ccatcctctt
     1741 tgttccggca tgcggccatg agtccaaggc ccttgcccgg tcctgccgac ccctcataat
     1801 cgcttggtca tggatctcaa ttcgcccttc ttcgaccgca tccggatcaa gccggcctgc
     1861 gacgagccgc gcgaggccgc cgacccggcc tgcgaccgca ccggctgcgc cgccacgggg
     1921 ctgtaccgcg ccccgaaggg ccgcgcgcgc gaggggcagt actggcgttt ctgcctcgac
     1981 cacgtgcgcg agtacaacgc ttcctacaac tacttcgacg ggatgacgga cgacgccgtc
     2041 gtcgcctacc agaaggacgc cgtcatcggg caccggccga cgtggtccat gggcgtcaat
     2101 ccgacggctc agggcggttc ggagcggccc gagggtcccg tgcgcgactg ggcctacgtc
     2161 gacccgctcg gcatcctcga tgctgagacc gtcaaggctc gccgggccgc gcccgagcc
//
LOCUS       DASQWN010000288         2888 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_123678, whole genome shotgun sequence.
ACCESSION   DASQWN010000288 DASQWN010000000
VERSION     DASQWN010000288.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2888)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2888)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2888
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_123678"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1008
                     /locus_tag="VE686_05530"
     CDS             <1..1008
                     /locus_tag="VE686_05530"
                     /inference="COORDINATES: protein motif:HMM:NF012772.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EAL domain-containing protein"
                     /protein_id="HYY83945.1"
                     /translation="CPRDQAELATTRLIQSVEGSPIKTARGPCIVRLRIGAATAPDHA
                     ADAPALLCRAEDALARARRGFGRPVVMYDPAEAREAARVSGPASSLDLVAALNERRVG
                     LALQPVVDAATRAPAFHEALVRIHAPDGLLLAAGEFLPRVERAGLVPLLDARVLELAA
                     DYLAANPDERLSINVSPTTIENTDWLGVLAGHLGARRGIESRLIVEVLETAAVRDPAG
                     LRGRLDAMKALGVGIAIDDFGAGHTSFKLLRSLPVDILKIDGAFVQNLARSPEDRFFV
                     RTLLDLAHHLGIATVAEWVEDEDTARLLTQWGVDYLQGNHCGAPALIEDGPALPQSQV
                     A"
     gene            complement(1010..1585)
                     /gene="phaR"
                     /locus_tag="VE686_05535"
     CDS             complement(1010..1585)
                     /gene="phaR"
                     /locus_tag="VE686_05535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015932342.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polyhydroxyalkanoate synthesis repressor PhaR"
                     /protein_id="HYY83946.1"
                     /translation="MADKAPTVIKKYANRRLYHTGTSTYVTLEDLAGMVREGEDFAVY
                     DAKTGEEITRSVLTQIIFEQEAKEGQNLLPVTFLRQLIRFYGDSMQALVPSYLEFSMD
                     NLSREQKQLREQLAGAFGPKAFKAMEEQVRANMGLFTEAMRMFSPFSARGDKSGEAAG
                     EGAGGDPASELDGLKRQMAEMQARLEALSRK"
     gene            1829..>2888
                     /locus_tag="VE686_05540"
     CDS             1829..>2888
                     /locus_tag="VE686_05540"
                     /EC_number="2.3.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009493259.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016747 - acyltransferase activity,
                     transferring groups other than amino-acyl groups [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA C-acetyltransferase"
                     /protein_id="HYY83947.1"
                     /translation="MAGQDIVIVGAARTAVGSFNGAFANTPAHELGAVAIKAALERAK
                     VDAAEVDEVILGQILTAGQGQNPARQAAMKAGVPQEKTAWGLNQLCGSGLRTVAIGMQ
                     QIANGDADIIVAGGQESMSQAPHAAYMRSGTKMGDFKLIDTMLKDGLIDAFQGYHMGT
                     TAENVAQRWQLTRDEQDQFAVASQNKAEAAQKAGKFKDEIVAVTIPGRKGDTVVDQDE
                     YIRAGTTIDAVAKLRPAFSKDGTVTAGNASGINDGAAALVLMTAENAKKRGLTPLARI
                     ASWATAGVDPAIMGTGPIPSSRRALEKAGWKVADLDLVEANEAFAAQACAVNKDMGWD
                     PEIVNVNGGAIAIGHPIGA"
BASE COUNT          425 a         1068 c          985 g          410 t
ORIGIN      
        1 tgcccgcgcg accaggcgga gctcgcgacc acacggctga tccagtcggt cgaggggagc
       61 ccgatcaaga cggcacgcgg accctgcatc gtccggctgc ggatcggcgc cgcgaccgct
      121 cccgaccacg ccgccgacgc ccctgccctc ctgtgccggg ccgaggacgc cctggcgcgc
      181 gcccgccgcg gcttcggcag gcccgtggtc atgtacgacc ccgcggaggc acgcgaggcg
      241 gcccgggtct ccgggccggc ctcgtccctc gacctcgtcg ccgccctgaa cgagcgccgc
      301 gtcggtctcg cgctgcagcc ggtcgtcgat gcggcgacgc gcgcgccggc cttccacgag
      361 gcgctggtgc gcatccacgc gcccgacggc ctcctcctcg ccgcgggcga gttcctgccg
      421 cgcgtggaac gcgccggtct cgtcccgctc ctcgacgcgc gggtgctgga gctcgcggcc
      481 gactacctcg ccgcgaaccc tgacgagcgg ctctcgatca acgtctcgcc gacgaccatc
      541 gagaacaccg actggctcgg cgtcctcgcc gggcacctcg gggcacgccg cgggatcgag
      601 tcgcggctca tcgtcgaggt gctcgagacc gccgccgtgc gcgacccggc gggcctgcgc
      661 gggcgcctcg acgccatgaa ggcgctcggc gtcggcatcg ccatcgacga cttcggcgcc
      721 gggcacacgt cgttcaagct cctgcgcagc ctgccggtgg acatcctcaa gatcgacggc
      781 gccttcgtgc agaacctcgc gcgctcgccc gaggaccgct tcttcgtgcg cacgctcctc
      841 gacctcgccc atcacctcgg catcgcgacg gtggcggaat gggtcgagga cgaggatacg
      901 gcgcgcctgc tcacgcagtg gggcgtcgac tacctgcagg gcaaccattg cggcgcgccc
      961 gcgcttatcg aggacggccc ggccctcccg cagtcgcagg tcgcctgagc tacttgcgcg
     1021 agagcgcctc gagcctcgcc tgcatctcgg ccatctggcg cttgaggccg tcgagctcgc
     1081 tcgcagggtc gccgcctgcc ccttcgccgg ccgcctcccc gctcttgtcg ccgcgcgcgc
     1141 tgaagggcga gaacatgcgc atggcctcgg tgaacagccc catgttggcg cgcacctgct
     1201 cctccatggc cttgaaggcc ttcggcccga aggcgccggc gagctgctcg cggagctgct
     1261 tctgctcgcg cgagaggttg tccatggaga actcgaggta gctcgggacg agcgcctgca
     1321 tgctgtcgcc gtagaagcgg atgagctggc gcaggaaggt cacgggcagc aggttctgcc
     1381 cttccttggc ctcctgctcg aagatgatct gcgtcagcac cgagcgggtg atctcctcgc
     1441 ccgtcttggc gtcgtagacg gcaaagtcct cgccctcgcg caccatgccg gcgaggtcct
     1501 cgagggtgac gtaggtggag gtgcctgtgt ggtagagccg ccggttggcg tacttcttga
     1561 tgaccgtcgg tgccttatcc gccatgatgc cctgacttcc gcatggtccg acttccgacg
     1621 gcgccgccgg ccgggccggt gagcttgagc gcagattagg cgtttcgctg cggcgcggaa
     1681 acagcaattt cgcccgccct cgcgaggccg ccccgcgcct gccgcgcagc ccgacggccg
     1741 gttgcgtccc ttgacttgcg tcctgccggg gttttgatcg ggtcagagcg ccgagcaggc
     1801 tcggctcgca agaggaagga ccaccgccat ggcaggccag gacatcgtca tcgtgggcgc
     1861 cgcccgcacc gccgtcggct cgttcaacgg cgccttcgcc aacacgccgg cgcacgagct
     1921 cggggccgtc gccatcaagg cggcgctcga gcgcgccaag gtcgatgcgg cggaagtcga
     1981 cgaggtcatc ctcggccaga tcctcacggc cggccagggc cagaacccgg cccgtcaggc
     2041 cgccatgaag gccggcgtgc cccaggagaa gaccgcctgg gggctcaacc agctctgcgg
     2101 ctcgggcctt cgcacggtgg cgatcggcat gcagcagatc gccaacggcg acgccgacat
     2161 catcgtggcc ggcggccagg agtccatgtc ccaggcgccg cacgccgcct acatgcggtc
     2221 cggcaccaag atgggcgact tcaagctcat cgacaccatg ctgaaggacg ggctcatcga
     2281 cgccttccag ggctaccaca tgggcaccac ggccgagaac gtggcccagc gctggcagct
     2341 cacccgcgac gagcaggacc agttcgccgt cgcctcccag aacaaggccg aggcagccca
     2401 gaaggccggc aagttcaagg acgagatcgt cgcggtcacg atccccggac ggaagggcga
     2461 caccgtcgtc gaccaggacg agtacatccg cgccgggacg accatcgacg ccgtggcgaa
     2521 gctgcggccg gcgttctcca aggacggcac cgtgacggcc ggcaatgcgt cgggaatcaa
     2581 cgacggggcc gctgccctgg tgctgatgac cgccgagaat gccaagaagc gcggcctcac
     2641 gcccctcgcc cgcatcgcct cgtgggcgac ggccggcgtc gacccggcca tcatgggcac
     2701 gggcccgatc ccgtcgtcgc gccgcgccct cgagaaggcc ggctggaagg tcgccgacct
     2761 cgacctcgtc gaggccaacg aggccttcgc ggcgcaggct tgcgcggtga acaaggacat
     2821 gggctgggac ccggagatcg tgaacgtcaa cggcggcgcc atcgccatcg ggcaccccat
     2881 cggggcgt
//
LOCUS       DASQWN010000289         2027 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_51218, whole genome shotgun sequence.
ACCESSION   DASQWN010000289 DASQWN010000000
VERSION     DASQWN010000289.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2027)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2027)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2027
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_51218"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..257
                     /locus_tag="VE686_05545"
     CDS             <1..257
                     /locus_tag="VE686_05545"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="DoxX family protein"
                     /protein_id="HYY83948.1"
                     /translation="LLVAAMFLAGWFTRWTALVLAAWCVGSAIFGHAEIGDRNQWIHF
                     LKNFGLAGGFLQAFAFGGGAYSLDAFMNRRGSGLGERSYR"
     gene            complement(319..630)
                     /locus_tag="VE686_05550"
     CDS             complement(319..630)
                     /locus_tag="VE686_05550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009493344.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyhydroxyalkanoic acid system family protein"
                     /protein_id="HYY83949.1"
                     /translation="MSKPIVISIPHQLGKDEARRRLETGFAGLQRQFSTQIASMDQRW
                     EADRMDFKVGAMGQTIAGHLEVMQDSVRVELVLPWILAMVAEKARGFIQKQGTLMLEK
                     K"
     gene            complement(697..897)
                     /locus_tag="VE686_05555"
     CDS             complement(697..897)
                     /locus_tag="VE686_05555"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY83950.1"
                     /translation="MTAFSRAPALGLWKQDRGQTARDDIVVLEVMAEALDRAWWRSYR
                     VRLERDFRQDVIVIRASAVEVI"
     gene            complement(1024..1254)
                     /locus_tag="VE686_05560"
     CDS             complement(1024..1254)
                     /locus_tag="VE686_05560"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY83951.1"
                     /translation="MEAVYAAGSLPVAPHDRLTKVTAAGLQLFGFVVVEEVQADGSLR
                     RLKASETIQAATTRPWRVSKSSFAQTSFGIPS"
     gene            complement(1413..1664)
                     /locus_tag="VE686_05565"
     CDS             complement(1413..1664)
                     /locus_tag="VE686_05565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017485840.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY83952.1"
                     /translation="MGQTYHIEAVGFENAGGPPEVIQRLAVRSDAFEAVHQRAMRLFQ
                     RARAPQWTGAPVEAVRILDGAGSEVFRWTVWDDMSAPRS"
     gene            complement(1687..1995)
                     /locus_tag="VE686_05570"
     CDS             complement(1687..1995)
                     /locus_tag="VE686_05570"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY83953.1"
                     /translation="MTDIVEVFWNARPHLARAGIKVGAAALDPRAERLFSEVRTAAGE
                     AFPGCVTLVRIVTRKEPDVDLRAVRGGVAVGASEIAALRTRMEAAAEAALAVEETPTS
                     "
BASE COUNT          318 a          719 c          679 g          311 t
ORIGIN      
        1 agctcctggt ggcggcgatg ttccttgccg ggtggttcac gcgctggacg gccctcgtcc
       61 tggcggcctg gtgcgtcggt tcggccattt tcggccatgc cgagatcggc gaccgcaacc
      121 aatggatcca cttcctcaag aactttggcc tcgccggcgg cttcctgcag gccttcgcgt
      181 tcgggggcgg ggcctacagc ctcgacgcct ttatgaaccg gcgcgggtcg gggctcgggg
      241 agaggtccta ccggtaagcc gcacgcgatg gcccctcccc gcggcgggag gggcggcgcg
      301 cttacgccga cgcttacgtc acttcttctc cagcatgagg gtgccctgct tctggatgaa
      361 gccgcgcgcc ttctcggcga ccatggcgag gatccacggc agcacgagct cgacgcgcac
      421 cgagtcctgc atcacctcga ggtggccggc gatggtctgg cccatggcgc cgaccttgaa
      481 gtccatgcgg tcggcctccc aacgctggtc catcgaggcg atctgggtgc tgaactgtcg
      541 ttgcagcccc gcaaacccgg tctcgaggcg gcggcgagcc tcgtccttgc cgagttggtg
      601 cgggatggag atcacgatgg gcttcgacat gcgggcgctc ctcggcccgt aaagcccggt
      661 ttcgccgatc gggttccctg tggccgggcc cgcgcgtcag atcacctcga cagcgctcgc
      721 gcggatgacg atgacgtcct gccggaagtc acgctcgagc ctcacgcgat acgagcgcca
      781 ccacgcgcgg tcgagcgcct ccgccatcac ctcgaggacg acaatgtcgt cgcgcgccgt
      841 ttggccccgg tcctgcttcc ataggccgag cgccggcgca cgcgagaagg ccgtcaagcc
      901 gccgaagcgc tgggtcagct cgcggcggac atcggcgaac agctcgggcc cgaatgcccg
      961 gccctcgttg tcggacagcg gcaggaataa ctcgacgagg tgcagcgccg cctccgccgg
     1021 gtgtcagctc gggatgccga agctcgtctg ggcaaaggag gacttcgaca cccgccaggg
     1081 acgcgtcgtc gcggcctgga tcgtctccga ggccttcagg cgccgcagcg atccgtcggc
     1141 ctgaacctcc tcgaccacga cgaatccgaa gagctggagt ccggccgcgg tcaccttcgt
     1201 cagccggtcg tgcggcgcca ccggcagcga tccggccgcg tacacggctt ccatcaggct
     1261 cttctgctca cggaagacgg aacccccgcg gcgcgggccc ggaaagcgga ccacgttggc
     1321 ggcgggaggg caggctgaac tcgtacgcat gcgacgcaac tctgtgaacg tcgcgaatct
     1381 gcgccgaaac gcttaaaatc cgctaaagga cgtcagctcc gcggcgccga catgtcgtcc
     1441 cagacggtcc agcggaagac ctcgcttccg gcgccgtcga gaatgcggac ggcctcgacg
     1501 ggcgcgccgg tccactgcgg cgcccgagca cgttggaaca gccgcatcgc ccgctggtgc
     1561 acggcctcga acgcgtcgga cctcaccgca agccgctgga tgacctccgg cgggcctccg
     1621 gcgttctcga agccgaccgc ttcaatgtga taggtctggc ccatgcccgc gccgcgcggc
     1681 tggccctcag gacgtgggag tttcctcgac ggcgagcgca gcctccgccg ccgcctccat
     1741 acgcgtgcgc aaggcggcaa tctcggacgc gccaaccgcc acgccgccgc gcacggcccg
     1801 cagatcgacg tccggctcct tgcgagtgac gatccggacg agcgtcacgc agcctgggaa
     1861 tgcctccccg gcggccgtcc tgacctcgct gaacaggcgc tcggcacggg gatcgagggc
     1921 ggcggccccc accttgatgc cggcgcgcgc aagatgaggc cgagcgttcc agaacacttc
     1981 aacgatgtcg gtcacgggag ctcacaagaa aaagcgcctc gtatgag
//
LOCUS       DASQWN010000290         4125 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_818229, whole genome shotgun sequence.
ACCESSION   DASQWN010000290 DASQWN010000000
VERSION     DASQWN010000290.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 4125)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4125)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4125
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_818229"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(99..413)
                     /locus_tag="VE686_05575"
     CDS             complement(99..413)
                     /locus_tag="VE686_05575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009763765.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SWIB/MDM2 domain-containing protein"
                     /protein_id="HYY83954.1"
                     /translation="MATKSAGATKGGAKKEAGTKTARKPNAAFMKPLQPSKELGAVVG
                     TNPLPRSEVVSKMWDYIRKNNLQNPQNKREIMADDKLQAVFGKKNVSMFEMNKYIAQH
                     LT"
     gene            complement(596..889)
                     /locus_tag="VE686_05580"
     CDS             complement(596..889)
                     /locus_tag="VE686_05580"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY83955.1"
                     /translation="MARPGTHLHPPPPADEAYAQVDEIVPAVQSALAALADLDTRYEI
                     ERERLEGWPGPKPAKVRLSAALQERYRAERRTFVEQLEVLQRMLLARRPRILH"
     gene            1035..1484
                     /locus_tag="VE686_05585"
     CDS             1035..1484
                     /locus_tag="VE686_05585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003606989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MaoC family dehydratase"
                     /protein_id="HYY83956.1"
                     /translation="MMLELRVLHFEDLSVGMSETFAKTVSSSDVVGFAEISGDRNPIH
                     LSQHFAAKTPFGTRIAHGLYTASLISAVLGTRLPGPGAIYIGQTLNFRAPVRIGDTVE
                     VRVEVVELVAERHRARLACTCTVAGEVVLDGEATVKVPTRADSPPLL"
     gene            1512..1760
                     /locus_tag="VE686_05590"
     CDS             1512..1760
                     /locus_tag="VE686_05590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017487263.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3297 family protein"
                     /protein_id="HYY83957.1"
                     /translation="MTNTPPDRLSTNPKSPYYDEEILARDVGIRFKGVEKTNVEEYCV
                     SEGWIRVAAGTAKDRYGNPLTIKLTGAVEPYFRTGDQG"
     gene            complement(1796..2302)
                     /locus_tag="VE686_05595"
     CDS             complement(1796..2302)
                     /locus_tag="VE686_05595"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY83958.1"
                     /translation="MLPSALPPFWSMMVWGLVATVAMTTVLQGAQGLGLSRLSLPFLA
                     GTFFTGDRRWAVIVGFVFYVVGGWLFAFLYFVLFASLGLYTWWLGLAAGLLHGLFLLA
                     AALPLLPYIHPRMASEYDGASTVRQLEPPGFMGLNYGHRTPLTTLVGQAVYGMALWGL
                     PQLFMAAR"
     gene            complement(2305..>4125)
                     /locus_tag="VE686_05600"
     CDS             complement(2305..>4125)
                     /locus_tag="VE686_05600"
                     /inference="COORDINATES: protein motif:HMM:NF012926.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 15 protein"
                     /protein_id="HYY83959.1"
                     /translation="PLGAPRHVAEPVIGDYALIGDCRTAALVSRDGAVDWLCLPHFSG
                     ASVFAGILDRDSGGSFSIRPAGGFRSSRRYIPETAVLETTFACTTGVVRLTDLMPVGE
                     GPAPLQPMRELLRVVEGVEGRVEMEVRWEPRPDYARAAVRMRPRGALGFACASRDELF
                     LLRAESELHVTPDGAGVSGVLTIEAGETVSFSLSYVKGDVAVCPGLGTEAAARLRSTM
                     AWWRRWTKRCGYRGDYGEAVMRSAITLKLMTFALSGAVIAAPTASLPEAIGADRNWDY
                     RYCWLRDAALTMRAFTGLGYQDEAASFLQWLLHATRLTWPELQIMYDVYGGKNLRERV
                     LDHLGGYRGSRPVRIGNGAHSQLQLDVYGSVLSAALAFAQAGGALGAAEARLLKGFGE
                     TAARRWREPDHGIWEIRGDARHYTHSKVMCWLAVESLIKLHERGCVAIDADRFRRERD
                     SIAVAIETRGYDETLQAYVGAFETPKVDAALLLMGCVGYKDPSDARMRATLDRIDERL
                     GRDGLLFRYEQGYDRMAAPEGAFGICSFWRVENLARRGDIEVAERAFERMLAFANDVG
                     LFGEEIDIDTGAALGNFPQAYTHVGLINAALAIERARRAG"
BASE COUNT          670 a         1420 c         1414 g          621 t
ORIGIN      
        1 tggcccgcgc gctggctcgg tcctgacgca acaaggcccg cgcacttcgg cggaacgcgg
       61 gccttcaaaa actgtcgcgc ctgaggcgct tgcgcggcct acgtgaggtg ctgcgcgatg
      121 tacttgttca tctcgaacat ggagacgttc ttctttccga agacggcctg cagcttgtcg
      181 tcggccatga tctcgcgctt gttctgcggg ttctgcagat tgttcttgcg gatgtagtcc
      241 cacatcttgc tgaccacctc ggaacggggc agcgggttgg tcccaaccac ggcgccgagc
      301 tccttcgagg gctgcagcgg cttcatgaac gccgcgttcg gcttgcgggc cgtcttggtg
      361 ccggcttcct tttttgcccc gcccttggtg gcaccagctg acttcgtcgc catcgttgtc
      421 cctccgagtt gcctcttgtc agattcgggg cctcggcccg cgggccgtac ataggcaccc
      481 tacgggagaa aatgctagcc cgcattgcca gagggctggg gaggacatgg acgcaatcgg
      541 aggttgcttc ggctgtgcga tctcgcaggg agcgcggcgc agagccggag gcaggctagt
      601 ggaggatgcg cgggcggcgc gctaacagca tgcgctgcaa gacctcgagc tgctcgacga
      661 acgtccggcg ctcggcgcga tagcgctcct ggagcgccgc cgagagccgc accttcgcgg
      721 gcttcggccc gggccagccc tcgaggcgct cgcgctcgat ctcgtagcgc gtgtcgaggt
      781 cggcaagggc ggcgagcgcg ctctggaccg caggcacgat ctcgtccact tgcgcgtagg
      841 cctcgtcagc cggcggcggc gggtgcaggt gggtgccggg ccgtgccacg gcggcctcca
      901 ttgcgagttt cgcttggagc cgaatcatag caattcggcc gcgcaggtaa acgtggcagt
      961 ctcgcgccgc agcatggcgt gccgcgatgc ggtggagaag cgttggcggc atggttcgcc
     1021 cgagatcagg agacatcatg ctcgaattgc gcgtgcttca cttcgaggat ttgagcgtcg
     1081 gcatgagcga gacattcgcc aagaccgtaa gctcttccga tgtcgtgggg tttgcggaga
     1141 tttcgggcga ccgcaacccg atccacctgt cgcagcattt cgccgccaag acgccgttcg
     1201 gcacccgcat cgcgcacggg ctctataccg ccagcctcat ctccgccgtc ctcggcacgc
     1261 gattgccggg accgggggcg atctacatcg gccagaccct gaacttccgc gcgccggtcc
     1321 gcatcggcga taccgtggag gtccgcgtcg aggtggtcga gctcgtcgcc gagcgccacc
     1381 gggcgcggct tgcctgcacc tgcacggtcg ctggcgaggt cgtgctcgac ggcgaggcga
     1441 ccgtgaaggt accgacgcgc gccgacagcc ctcccctcct ctgacccgtc caaccgagac
     1501 ccgaagaacc gatgaccaac acgcctcccg accgcctgtc caccaacccc aagagcccgt
     1561 actacgacga ggagatcctc gcccgcgacg tcggcatccg cttcaagggt gtcgagaaga
     1621 ccaacgtcga ggagtactgc gtctccgagg gctggatccg cgtcgccgcc ggcaccgcca
     1681 aggatcgcta cggcaacccg ctcaccatca agctgacggg cgcggtcgag ccctacttcc
     1741 gcaccggcga ccaggggtga tcggcgccgc tcgcgagtga gcgcgatgcc gtcctctagc
     1801 gggccgccat gaagagctgc ggcaggcccc agagggccat gccgtagacg gcctggccca
     1861 cgagggtggt gagcggcgtg cggtggccgt agttgaggcc catgaatccc ggcggctcga
     1921 gctgccgaac cgtcgacgcg ccgtcgtact cggacgccat gcgcgggtgg atgtagggca
     1981 agagaggcag cgcggcggcg agcaggaaga ggccgtgcag gagccccgcc gcgagcccga
     2041 gccaccacgt gtacaacccg aggctcgcga acagcacgaa gtacaggaac gcgaacagcc
     2101 atcccccgac gacatagaag acgaagccga cgatcacggc ccagcgccgg tcgcccgtaa
     2161 agaacgtgcc ggcgaggaac ggcaagctga ggcgcgacag ccccaagccc tgcgccccct
     2221 gcagcaccgt cgtcatcgcg acggtggcga cgaggcccca caccatcatg ctccagaaag
     2281 gcggcagggc tgacgggagc atggtcaacc ggccctccgc gcccgctcga tggcgagcgc
     2341 cgcattgatg aggccgacgt gggtgtaggc ctgcggaaag ttcccgagcg ccgcgccggt
     2401 gtcgatgtcg atctcctctc cgaacaggcc gacgtcgttg gcgaaggcga gcatgcgttc
     2461 aaacgcacgc tcggcgacct cgatgtcgcc gcgccgcgcg agattctcga cgcgccagaa
     2521 gctgcagatg ccgaatgcgc cctccggggc ggccatgcgg tcgtagcctt gctcgtaccg
     2581 gaacaggagg ccgtcgcggc cgagccgctc gtcgatacgg tcgagggtcg cccgcatgcg
     2641 ggcgtcggac gggtccttgt agccgacgca acccatcagc agcagcgccg cgtccacctt
     2701 cggcgtctcg aaggcgccga cgtaggcttg caaggtttcg tcgtagcctc gcgtctcgat
     2761 cgccaccgcg atgctgtcgc gctcgcggcg gaagcggtcg gcgtcgatcg ccacgcatcc
     2821 gcgctcgtgc agcttgatca ggctttccac ggcgagccag cacatcacct tggagtgggt
     2881 gtagtggcga gcgtcgccgc ggatttccca gatgccgtgg tcgggctcac gccagcgccg
     2941 ggcggcggtc tcgccgaacc ctttgaggag ccgcgcttcg gccgcgccga gcgcaccgcc
     3001 ggcctgcgcg aaggcgagcg cggccgacaa gacgctgccg tacacgtcga gctgaagctg
     3061 ggagtgcgcg ccgttgccga tgcgaacggg ccgcgagccg cggtatcccc cgaggtggtc
     3121 gagcacgcgt tcgcgcagat tcttgccgcc gtagacatcg tacatgatct ggagttcggg
     3181 ccacgtcagc ctggtcgcgt gcaggagcca ctgcaggaac gaggccgcct cgtcctggta
     3241 cccgaggccg gtgaaggcgc gcatggtgag cgccgcgtcc cggagccagc aatagcggta
     3301 gtcccaattt cgatccgccc cgatcgcctc agggagcgac gccgtcggag cggcgatcac
     3361 cgcgcccgag agggcgaagg tcatgagctt caaggtgatc gcgctgcgca tcaccgcctc
     3421 gccatagtcg ccccggtagc cgcagcgctt cgtccagcgg cgccaccacg ccatggtgga
     3481 gcgcaggcgc gcggccgcct cggtcccgag ccccgggcac acggcgacgt ctcccttcac
     3541 gtacgagaga gagaaggaga ccgtctcgcc cgcttcgatc gtcaagacgc cgctcacgcc
     3601 ggcgccgtcg ggcgtgacat gcagttccga ctccgcccgg aggaggaata gctcgtccct
     3661 ggaggcgcag gcgaagccga gcgcaccgcg gggcctcatg cgcactgcgg ctcgggcgta
     3721 atcggggcgc ggctcccagc gcacctccat ctcgacccta ccttcgacgc cctccacgac
     3781 gcgcagcaac tcgcgcatgg gctgaagcgg cgccgggccc tcgccgaccg gcatgaggtc
     3841 ggtgaggcgg accactcccg tggtgcacgc gaacgtcgtc tcgaggaccg ccgtctcggg
     3901 gatgtatcgt cgcgaggagc ggaacccgcc cgccgggcgg atcgagaagc ttcccccgct
     3961 gtcgcggtcg aggatgccgg caaacacgct cgcgcccgag aagtggggca ggcacagcca
     4021 gtcgaccgcg ccgtcacgcg acacgagggc cgcggtgcgg cagtccccga tcagcgcata
     4081 gtcgccgatg accggctccg ccacgtgccg cggggcacca agggg
//
LOCUS       DASQWN010000291         5023 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1340879, whole genome shotgun sequence.
ACCESSION   DASQWN010000291 DASQWN010000000
VERSION     DASQWN010000291.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 5023)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5023)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5023
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1340879"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1251
                     /locus_tag="VE686_05605"
     CDS             <1..1251
                     /locus_tag="VE686_05605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009763749.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_function: GO:0004673 - protein histidine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAMP domain-containing sensor histidine kinase"
                     /protein_id="HYY83960.1"
                     /translation="VLDAAPGERLSADLEARLLAGVGARAIAVRGGGTRRLLALDPMP
                     PRVDGTVDLRDAHWHTLIADAFAVLLAPATHPIRVIGPGMAGTDFVELVLDQAPLRAA
                     MIEFSRNILLLSLAISGITAGLVYLALQLVIVRPVRRLSRNIASFAQDPEDISRVIDP
                     SRRTDEIGIAEQALASMEETLAGELRQKRRLADLGLAVSKINHELRNMLTTAQLLADR
                     LEGVADPAAQRVLPRLVSTLGRAIDFCEATLAYGRAAERLPQRRLVPLKPLVDELADL
                     VGLAPGAAIAFEAGVPDDLLVDADPDQLSRVLVNLVRNAVQALSQAGASGGNPRIDVV
                     AKREGSVVEVLVCDNGPGVPERAKAHLFSAFRGTARAGGAGLGLAIAAEIARLHGGTL
                     ALDEVATETCFRLVLPDAAKRPLG"
     gene            1340..1416
                     /locus_tag="VE686_05610"
     tRNA            1340..1416
                     /locus_tag="VE686_05610"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1374..1376,aa:Arg,seq:acg)
     gene            complement(1788..2255)
                     /locus_tag="VE686_05615"
     CDS             complement(1788..2255)
                     /locus_tag="VE686_05615"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY83961.1"
                     /translation="MWRPSRLTLAASGALALGACSTITPIVVTTTPKPQVAARNALRV
                     PAGPVQRYEGQAWTTAYTGTLRAGPCRGSYNGPLEAPVLTMELRCDDGRYGIGRATRN
                     GAQLVGGVVQLADGGTATVQAIGPQLSYRLMPEPAPWDYSWHSRQAGAAPPGR"
     gene            complement(2331..2906)
                     /locus_tag="VE686_05620"
     CDS             complement(2331..2906)
                     /locus_tag="VE686_05620"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY83962.1"
                     /translation="MAATLKLLPTEQIPGDAARGWNLTDLLRRVAAEHEQGDGIDHAA
                     EAADIEVAETEAPAITADDASTPTLEAERTPDVVMANKPESDAPWIDALDLAIEATDA
                     IRAADERIARLEAQNRELEKYLETEVRSLHGRVKTADELVARAEAAKAAAEERAREAE
                     RRADAVEIWLGRIRDQLTSIRPQAVARLKRA"
     gene            complement(2945..3559)
                     /locus_tag="VE686_05625"
     CDS             complement(2945..3559)
                     /locus_tag="VE686_05625"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009764546.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016746 - acyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0046677 - response to antibiotic [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CatB-related O-acetyltransferase"
                     /protein_id="HYY83963.1"
                     /translation="MQRLTNWRNPRNLTRIHLAGLVRRHGFAIGDHTYGRPKVRFADS
                     GRKLTIGAYCSIADGVEIMLGGNHRTEFVATFPFGSFPDAWPGEGLAYVPGTRGDVTI
                     GNDVWIGSGAMILSGVTVGDGAAIGARSVVSRDVAPYAVVAGNPAKLLRRRFDDDTVA
                     RLAAAAWWDLPDEEVHRLVPLLQSDRVSELIAGVTAARARFTRR"
     gene            3653..4744
                     /locus_tag="VE686_05630"
     CDS             3653..4744
                     /locus_tag="VE686_05630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017486325.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY83964.1"
                     /translation="MTQHARPDVSDTGPAGTWRRFVAAFAIAALTSAAALWLFVVWLD
                     PYGLRTRPGRPPTPIMDLNQRFMYPQLARSGRFDAAVFGTSTVRLLDPTTLDRLFGAR
                     FANFGLNAGTPWEQVQLARLFLRQVPRLKMVIFGLDSTWCAADADAPGKRLTFRAFPE
                     WLYDDDDTGDVLHVFTARALEIAARVALHRLDLMPERIRGDGYEVFVPPDARYDLTRA
                     RAHLREPGRVGEEAVATSAEGAAPTSFPALRWLDDLLGELPAGTNVILVFPPVHIAAQ
                     PASGSSAAMRDQACKDEVAALGTRRGAAVVDFRVPSEVTTNDANYWDRLHFRVGIAER
                     FASALKVAHDTARGDDSGFYRVLSARAPQ"
BASE COUNT          724 a         1753 c         1738 g          808 t
ORIGIN      
        1 gtgctcgacg cggcgcccgg cgagcgtctg agcgccgatc tcgaggcgcg cctgcttgcc
       61 ggggtcggcg cacgcgcgat tgccgtgcgc ggcggtggca cgaggcggct ccttgccctc
      121 gatccgatgc cgccacgagt cgacggcacg gtggatctgc gcgacgcgca ttggcacacg
      181 ctcatcgctg acgcattcgc ggtgttgctg gcccccgcga cgcacccgat tcgcgtcatc
      241 ggccccggca tggcggggac ggacttcgtc gagctggtcc tcgaccaggc gccgttgcgg
      301 gcggccatga tcgagttctc gcgcaacatc ctcctgctct cgctcgccat ctcgggcatt
      361 accgccgggc ttgtctacct cgccctgcaa ctcgtcatcg tccggccggt gcgccgcctg
      421 tcgcgcaaca tcgcgtcgtt cgcgcaggat ccggaagaca tctcccgcgt catcgacccg
      481 tcgagacgga cggacgagat cgggatcgcc gagcaggcac tcgccagcat ggaggagacg
      541 ctcgcgggcg agttgcgcca gaagcgccgc ctcgccgacc tcgggctcgc cgtgagcaag
      601 atcaaccacg aactgcgcaa catgctgacg acggcccagc tcctcgccga ccggctagaa
      661 ggcgtcgcgg acccggccgc acagcgcgtg ctgccgcgcc tggtgagtac gctcgggcgc
      721 gccatcgact tctgcgaggc gacgctcgcc tacgggcgcg ccgccgaacg gctgccccag
      781 cgccgactcg tgcccctgaa gcccctcgtc gacgaacttg ccgacctcgt cggccttgcc
      841 ccgggcgcgg cgatcgcctt cgaggcaggc gtgcctgacg acctcctggt tgatgccgat
      901 cccgaccagc tctcgcgggt gctcgtcaac ctcgtgcgca acgccgtcca ggcgttgagc
      961 caggcgggtg cctcgggtgg caatcctcgc atcgacgtgg tcgccaagcg ggagggcagc
     1021 gtggtcgagg tgctggtgtg cgacaacggc cccggcgttc cggagcgggc gaaggcgcac
     1081 ctgttctcgg ccttccgcgg cacggcacgc gctggggggg cgggcctcgg cctcgccatc
     1141 gcggccgaga tcgcgcgcct gcacgggggc acgcttgccc tcgacgaggt cgcgacggaa
     1201 acgtgcttcc gcctcgtcct gcccgacgcc gcgaagcgcc ccctcggctg atcaggcagg
     1261 gttgccaatg cggaccggac cctttaagtc agcgcctccc ggccgcgcgc tcgcctactc
     1321 gagcgtgacc cgccgattag cgcccgtagc tcagctggat agagcaccag actacgaatc
     1381 tgggggtcag aggttcgaat cctttcgggc gcgccagttt ctcacacgct accggcacag
     1441 gccttccgga ccgcacctgc ggtgggggcc ggactgggcg acggatcccg gcgtgcgacc
     1501 tggctgaaat cctgaattct gcgacaggcg atgaagcatg cgtgccggac ttgcattgtt
     1561 gatcatgagc accgctttgg cgttcggcgg ctgcgtcatg ccgagcacca gcaggggcgt
     1621 gctcgagccc gccaccgtga cgccgccgcc atcgttcgat ggtgatcttg cgtctccgcc
     1681 gacaaccgcc gaacggtctc aaggaacccg cagagctcag taatccgatg gcgcgtactg
     1741 acgccttcaa ctgaggcgga ccactcgccg gagaacggcg gagaaagtca gcggccgggc
     1801 ggcgccgccc cggcctggcg cgagtgccag gagtagtccc agggtgcggg ttcgggcatg
     1861 aggcgatagg acagttgcgg gccgatagcc tggacggtcg cggtgccgcc gtcggcgagt
     1921 tgcaccaccc ctccgacgag ttgcgcgccg ttgcgcgtcg cgcgcccgat gccgtagcgg
     1981 ccgtcatcgc agcggagctc catcgtgagc acgggcgcct cgagcggccc gttgtacgat
     2041 ccgcggcacg gccctgcccg gagcgtcccg gtgtaagccg ttgtccaggc ctggccttcg
     2101 tagcgctgca ccggccccgc cggcacccgc agggcattgc gagctgcgac ctgcggcttc
     2161 ggcgtggttg tcaccacgat cggcgtaatg gtggagcacg cgccgagcgc gagcgcgcct
     2221 gaagcggcaa gagtcagtcg cgacggacgc cacacgggcc agggttcctc atggtcgaag
     2281 gccgcagcac taccatgaaa gcgcgccggc gcggaacctg acctccggct tcaggcgcgc
     2341 ttcaagcgcg caacggcttg cggacggatc gaggtcagct ggtcgcggat gcggccgagc
     2401 cagatctcga ccgcatcggc gcggcgctcg gcttcgcggg cccgctcctc ggccgcggct
     2461 ttagccgcct cggcgcgggc gacgagctcg tcggcggttt tgacgcgccc gtgcagcgat
     2521 cggacttcgg tctcgaggta cttttcgagc tcgcggtttt gcgcctcgag ccgggcgatg
     2581 cgctcgtcgg cggcgcgaat ggcgtccgtc gcttctatgg cgaggtcgag ggcgtcgatc
     2641 cagggcgcgt ccgactcggg cttgttcgcc atgaccacgt cgggcgtgcg ctccgcctcc
     2701 aacgtcgggg tgctcgcgtc atcggcagtg atggcgggag cttccgtctc cgctacttca
     2761 atgtcggcgg cctcggccgc gtggtcgatg ccgtcgcctt gctcgtgctc ggcggcaacg
     2821 cgccggagca gatcggtgag gttccagccc cgcgcggcgt cgccggggat ctgctcggtc
     2881 ggaagtagtt tcagggtggc ggccatcagg ctctcctcgc ggccgcgata gtcggagcgt
     2941 atggttaacg gcgcgtaaat cgggcgcgtg ccgcggtgac cccggcgatg agttcactga
     3001 cgcggtcgct ttgcagcagg ggaaccaggc gatgtacctc ctcgtcaggt aggtcccacc
     3061 acgcggccgc cgcaagtctt gcaaccgtat cgtcgtcgaa tcgccgcctc aggagcttcg
     3121 cggggttgcc ggcgacgacg gcgtatggcg ccacgtcccg gctcacgacg gagcgggcgc
     3181 cgatggcggc tccgtccccg acggtcacgc ccgacaggat cattgcgccg gagccgatcc
     3241 agacgtcgtt gccgatggtc acgtcgcctc gcgtgcccgg cacgtaggcg aggccctcgc
     3301 ccggccaggc atccggaaac gacccgaacg ggaaggtcgc cacgaactcg gtgcgatgat
     3361 tgccgccgag catgatctcg acgccgtcgg cgatcgagca gtaggcccca atggtgagct
     3421 tgcggccgga gtccgcgaac ctcaccttcg ggcgaccgta cgtgtgatcc ccgatggcga
     3481 atccgtgccg gcgcacgagc cccgcgaggt ggatgcgcgt caggttgcgc gggttgcgcc
     3541 agttggttag ccgctgcagc acggtctctc ggatcccgtt cgggcaacgg tgctatgtag
     3601 cgcggggaag cgcgattgac acgctccagc ctgctccgca tgaaccgcgc ggatgacgca
     3661 gcatgcccgc cccgacgtga gtgacaccgg gcctgccggc acctggcggc gctttgtggc
     3721 ggcgttcgca atcgcggcgc tcacgtctgc ggcggcactc tggctcttcg tagtctggct
     3781 cgatccctac ggcttgcgaa cccgaccggg gcggccgccg accccgatca tggatctgaa
     3841 ccaacgcttc atgtaccccc agctcgcccg gagcgggcgg ttcgatgccg cggtgttcgg
     3901 cacctcgacg gtccgcctcc tcgatccgac gacgctcgat cggctcttcg gggcgcggtt
     3961 cgcgaacttc ggcctgaacg ccggcacgcc ctgggagcag gtgcagctgg cgcggctgtt
     4021 cctgcgccag gtgccccggc tgaagatggt gatcttcggc ctcgactcga cgtggtgcgc
     4081 cgcggacgcc gatgcacccg gcaagcgcct gacgtttcgc gccttcccgg agtggctcta
     4141 cgacgacgat gacacgggag acgtcctgca cgtcttcacg gcacgcgccc tcgagatcgc
     4201 cgcacgcgtc gctctgcacc ggctcgatct gatgccggag cgtatccgag gcgacggtta
     4261 cgaggtcttt gtgcctcccg acgcgcggta cgatctcacc cgcgcccgtg cccacctccg
     4321 ggaaccgggc cgcgtcggtg aagaggccgt cgcgacgagc gcggagggag cagcgccgac
     4381 gtccttcccg gccttgcgat ggctcgacga tcttctcggc gaactccccg ctggaacgaa
     4441 cgtcatcctc gtctttccac ccgtccacat cgccgctcag cccgcctccg ggagctctgc
     4501 cgcaatgcgc gaccaggcgt gcaaggacga ggtcgccgcg ctcggcaccc ggcgaggcgc
     4561 ggcggtggtc gacttccgtg tgccctccga agtcacgacc aacgacgcca actactggga
     4621 tcgtctgcat tttcgggtcg gtatcgccga acggttcgca tctgcgctca aggtggccca
     4681 cgacacggca cgtggggacg acagcggctt ctatcgcgtg ctgagcgcgc gagcgccaca
     4741 gtgacccgcg cgccacggcg gcgctcaatt gcaaaaaatc gaacctgctt gcgggcagcc
     4801 ggagcgatga ttcgccgcga gagggctggc gaagaacgac cgccgccttt accgtacggg
     4861 aaagcgttgg gggcgagtga tgaagtgggg tttcgggaag cagcaggtcg gggcgcgggc
     4921 gcgcgtcgag ccgccggcga acaccgctgc gaatgacgtg ctctggccga agagccccga
     4981 agccgaggct gtgccgtcgc acacgcaggc ccgtccctct ctg
//
LOCUS       DASQWN010000292         4447 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1140986, whole genome shotgun sequence.
ACCESSION   DASQWN010000292 DASQWN010000000
VERSION     DASQWN010000292.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 4447)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4447)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4447
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1140986"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            30..902
                     /locus_tag="VE686_05635"
     CDS             30..902
                     /locus_tag="VE686_05635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012330531.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD binding domain-containing protein"
                     /protein_id="HYY83965.1"
                     /translation="MKPALFRYARPETLDEALALLAEHGSEAAVLAGGQSLMPMLNLR
                     LAAPSIIVDINRIPGLDRIARTADGLVLGARVRHNDVLRSPDVRAAAPLLPMALAHVA
                     HEAIRNRGTLGGSLALADPAAELPACAVCLDATITVTSGAGERAVAASDFFEALYTTA
                     LQPGELLTAVTVPARDASWRFAFDEVARRHGDFALAAVAVAARVEDERIADCRIVFTG
                     IEPTSRRIAAAEACLTGAELASGEAVAEAVAALAHALEPMENSDYPIAYKLHLAGVLL
                     SRALAKVAQARRAA"
     gene            938..1918
                     /locus_tag="VE686_05640"
     CDS             938..1918
                     /locus_tag="VE686_05640"
                     /inference="COORDINATES: protein motif:HMM:NF015445.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TRAP transporter substrate-binding protein"
                     /protein_id="HYY83966.1"
                     /translation="MKMRSLIAALGLLAASVGVASAQETFTLKVGSILDPQHPLVIGA
                     RRMAEVAEAESKGRLKINVFPSSQLGAQREIWQNVQAGVIDGVLDASANLANFVPQFS
                     VLDLPYLVRDEASAFKLLDSKVVQDELLAKGNAAGFHLVNFWEVTFRNIYTRSRPINA
                     VADLKGQKIRVIPNPSFIALFRALGAAPTPMAFGEIYTALQQGVIDGAENDNVTYLST
                     KHYEVAPNLAITNHMMLANTFTMSERTWQKLPEDLRKIMQAASLEGRKAVAEERARRD
                     AKAVEELKSRGIKVTEPDLAPFVEAGRKTYDEMAQRIGKDLVAKIVEAVK"
     gene            1915..2430
                     /locus_tag="VE686_05645"
     CDS             1915..2430
                     /locus_tag="VE686_05645"
                     /inference="COORDINATES: protein motif:HMM:NF016200.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TRAP transporter small permease"
                     /protein_id="HYY83967.1"
                     /translation="MTRLRAAILALDGVVARVEAVAIALLVALLTGVTFSQVVSRYVF
                     DDPLIWSEEAARYLFVWVTMVGAALGMREGGHYGLDIVVKRLPRPLRGALGAMAALVV
                     LAFLAVLFVTGVQETQLAAMQYSATLPMRMHWAYLALPVGAALAIFHVFVHVARRGPF
                     MHLLDLKEAQG"
     gene            2427..3713
                     /locus_tag="VE686_05650"
     CDS             2427..3713
                     /locus_tag="VE686_05650"
                     /inference="COORDINATES: protein motif:HMM:NF018513.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0031317 - tripartite ATP-independent
                     periplasmic transporter complex [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0008643 - carbohydrate transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TRAP transporter large permease"
                     /protein_id="HYY83968.1"
                     /translation="MSASLLLFAAFVAFGVPIAFALGGAALAGLWLLEGVPLGVVASR
                     TFGAMDSFALLAIPFFILAGELMETGGISQRLVTLARVLVGHIRGGLGNVVIVAMVFF
                     SGISGSTNADAAAVGSVMIPPMKKQGYDGAQAGAIVAAAAGMGILVPPCLTMVVYGSV
                     TNTSIATLFAAGFLPAFIMAVALGLHVRWDAKRAGIPSDRRASWRERGRALADASWAL
                     LLPIIIFGGILGGVFTPTEAAVAAVIYAVIVGMMIYREITPRYLFRCLVRTGVTSGVV
                     MMMIAGANIFAWLMTVEGVPATLASAIQGVGGGKWTFLILSVLVFLPLFALLDGLPGM
                     LMVMPVFVPIAQQLGVDLVHYGILITTVMGIALFLPPFGVGLYIVLGLSGATLGALSR
                     YLLPYLATMTVIALVIALVPWVVYIVPYLLGLYTPT"
     gene            3738..4238
                     /locus_tag="VE686_05655"
     CDS             3738..4238
                     /locus_tag="VE686_05655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012455425.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:0051537 - 2 iron, 2 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="(2Fe-2S)-binding protein"
                     /protein_id="HYY83969.1"
                     /translation="MIPPDEPTLDIACTVNGAKVRDRVPVRQSLVDWIRHGLGLTGSH
                     VGCEHGVCGACHVVVGGKVVRGCLMLAAQADGEVVETIEGATDTGRLKVLQDAFYERA
                     ALQCGFCTPGMILQAAEFLEREPAPSREAIREALSGNCCRCTGYHAIVDAVETAAARL
                     SAERPA"
     gene            4235..>4447
                     /locus_tag="VE686_05660"
     CDS             4235..>4447
                     /locus_tag="VE686_05660"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase"
                     /protein_id="HYY83970.1"
                     /translation="MSPPLLVRGGRVLHPDGELHKPFVADVFVEDGRIVALGQAAAAQ
                     AARRPDVSVLDAAGMLVVPGFVNAHYH"
BASE COUNT          626 a         1587 c         1489 g          745 t
ORIGIN      
        1 ggcaagctcg gttccgagag tgtcctcgca tgaagcccgc cctgttccgg tacgcgcggc
       61 ccgagaccct cgacgaggcg ctcgcgctgc tggccgagca cggcagcgag gccgccgtgc
      121 tcgccggagg ccagagcctc atgccgatgc tcaacctgcg gctcgccgca ccctcgatca
      181 tcgtagacat caaccgcatt cccggcctcg accgcatcgc gcggacggcc gacggcttgg
      241 tgctaggcgc gcgggtccgc cacaacgacg tcctgcgctc gcccgacgtc cgggctgccg
      301 cgccgctcct gccgatggcg ctcgcccacg tcgctcacga ggcgatccgc aaccgcggca
      361 ccctcggcgg cagccttgcc ctggccgatc cggcggcgga gctgcccgcg tgcgcggtct
      421 gcctcgacgc aaccatcacg gtcacctcgg gggcgggcga gcgggcggtc gcggcctctg
      481 acttcttcga ggccctttac acgacggcgc tccagcccgg ggaactgctg acggccgtga
      541 cggtcccggc gcgcgacgcg tcgtggcgct ttgctttcga cgaggtcgcg cgccggcacg
      601 gcgacttcgc cctcgccgcc gttgccgtcg cggcgagggt cgaggacgag cggatcgccg
      661 actgccggat cgtgttcacg gggatcgagc cgacctcgcg ccggatcgcc gcagcggagg
      721 cgtgcctcac cggcgctgaa cttgcgagcg gagaggcggt ggccgaagcc gtcgccgcgc
      781 tcgcccacgc gctcgagcca atggaaaaca gcgactatcc aatcgcctac aagctccacc
      841 tcgccggtgt gctcctcagc cgcgctctcg cgaaggtcgc gcaggcgcgt cgggctgcct
      901 agcgacctct cagcgaacaa accatggaga taccaggatg aagatgagat ccctgatagc
      961 cgcgcttggg cttcttgcgg ccagcgtggg cgtcgcctcg gcacaggaga cgttcacgct
     1021 gaaggtcggc agcatcctcg acccccagca tccgcttgtc atcggcgccc gacgcatggc
     1081 ggaggtggcc gaagccgaga gcaagggaag gctgaagatc aacgtgttcc cgtcgagcca
     1141 gctcggcgcg cagcgcgaga tctggcagaa cgtccaggcc ggcgtcatcg acggcgtgct
     1201 cgacgcgagc gccaacctcg cgaacttcgt gccgcaattc agcgtgctcg acctgcccta
     1261 cctcgtccgg gacgaggcct ccgccttcaa gctcctcgac agcaaggtgg tgcaggacga
     1321 gctgctcgcg aagggcaatg cggcaggctt ccacctcgtg aacttctggg aggtgacctt
     1381 ccgcaacatc tacacgcgct cgcgcccgat caatgcggtc gccgacctca aagggcagaa
     1441 gatccgggtc atcccgaacc cgtcgttcat cgcgctgttc agggccctcg gcgcggcgcc
     1501 gactcccatg gcgttcggcg agatctacac ggcgctgcag cagggcgtga tcgacggggc
     1561 cgagaacgac aacgttacct acctctcgac caagcactac gaggtcgccc cgaacctcgc
     1621 gatcacgaac cacatgatgc tcgccaacac gttcaccatg agcgagcgca cctggcagaa
     1681 gctgcccgag gacctgcgca agatcatgca ggccgcctcc ctcgagggcc gcaaggctgt
     1741 ggccgaagag cgggcgaggc gcgacgccaa ggccgtcgag gaactcaagt cccgcggcat
     1801 caaggtgacc gagcccgatc tggcgccctt cgtcgaggcc ggccgcaaga cctacgacga
     1861 gatggcgcag cgcatcggca aggacctcgt cgccaagatc gtcgaggcgg tgaagtgact
     1921 cgactgcggg cggcgatcct ggcgctcgac ggggtcgtcg cgcgcgtcga ggcggtggct
     1981 atcgccctcc tggtggcgct cctcacgggc gtgaccttct cgcaggtggt gtcgcgctac
     2041 gtcttcgacg atccgctgat ctggtccgag gaggcggcgc gctatctttt cgtctgggtg
     2101 acgatggtcg gtgccgcgct cggcatgcgc gagggcggcc actacggcct cgacatcgtc
     2161 gtgaagcggc tgcctcggcc cctgcgcggc gctctggggg ctatggcggc gctcgtcgtc
     2221 ctggcgttcc tggcagtgct tttcgtcacc ggggtccagg agacccagct cgcggcgatg
     2281 caatattccg cgaccctgcc catgcgcatg cattgggcct atctggccct tccagttgga
     2341 gcggcgctcg cgatcttcca cgtgttcgtc cacgtggcgc gccgcggccc gttcatgcac
     2401 ctcctcgatc tcaaggaagc ccaggggtga gcgcttccct ccttctgttc gcggcattcg
     2461 tcgcctttgg ggtcccgatc gccttcgcgc tcggcggcgc ggcgctcgcg ggcctgtggc
     2521 tcctcgaggg cgtgcccctc ggggtcgtgg cgagccgcac cttcggtgcg atggacagct
     2581 tcgcgctcct cgccatcccg ttcttcatcc tcgccggcga gctcatggag acgggcggca
     2641 tctcgcaacg gctcgtgacg ctcgcccgtg tcctcgtggg acacatccgc ggcggcctcg
     2701 gcaacgtggt catcgtcgcc atggtgttct tctcggggat ctccgggtcg accaacgccg
     2761 acgcggcggc ggtcggctcg gtgatgatcc cgcccatgaa gaagcagggc tacgacggcg
     2821 cgcaggccgg cgcgatcgtc gccgcggcgg ccggcatggg catcctcgtc ccgccctgcc
     2881 tcaccatggt ggtctacggc agcgtaacca acacctccat cgcgacgctg ttcgcagctg
     2941 gcttcctgcc agccttcatc atggcggtcg cgctcgggct gcacgtgcgc tgggacgcga
     3001 agcgcgccgg catcccctcc gaccggcgcg cctcctggcg cgagcggggg cgggcgcttg
     3061 ccgatgcgtc gtgggcgctg cttctgccca tcatcatctt cggcggcatc ctaggcggcg
     3121 tcttcacccc gaccgaggcc gcggtggcgg cggtcatcta cgccgtcatc gtcggcatga
     3181 tgatctaccg cgagatcacg ccgcggtacc tgttccgctg tctcgtgcgg acgggagtca
     3241 cgtcgggcgt ggtgatgatg atgatcgcag gcgcgaacat cttcgcttgg ctcatgaccg
     3301 tcgagggcgt gccggcgacg ctggcgtcgg cgatccaggg cgtcggcggc ggcaagtgga
     3361 cattcctgat cctgtccgtg ctcgtcttcc tgcccctctt cgccctgctc gacgggctgc
     3421 ccggcatgct catggtcatg ccggtgttcg tcccgatcgc gcagcaactc ggcgtcgatc
     3481 tggtgcatta cggcattctg atcacgacgg tgatggggat cgcactgttc ctgccgccat
     3541 tcggggtcgg gctctacatc gtgctcgggc tctcgggtgc gacgctcggg gccttgagcc
     3601 gatacctgtt gccctacctc gcgacgatga cggttatcgc cctggtcatc gcgctcgtcc
     3661 cgtgggtcgt ctacatcgtc ccctacctcc tcgggctcta cacgccgacc tgacaccaag
     3721 agaggacctt tacagacgtg atcccgcccg acgagccgac cctcgacatc gcctgcacgg
     3781 tgaacggcgc gaaagtgcgc gaccgcgtgc cggtgcgcca gtccctggtc gactggatcc
     3841 gccacggcct cgggctgacg ggcagccatg tcggctgcga gcacggcgtc tgcggcgcct
     3901 gccacgtcgt cgtcggcggc aaggtcgtgc gcggatgcct gatgctggcg gcccaggccg
     3961 acggcgaggt cgtcgagacc atcgagggcg cgaccgatac aggccgcctc aaggtcctcc
     4021 aggacgcctt ctacgagcgc gccgccctgc agtgcggctt ctgcacgccc ggcatgatcc
     4081 tgcaggcggc ggagttcctc gagcgcgagc cggcgccgtc gcgcgaggcg atccgcgagg
     4141 cgctctcggg caactgctgc cgctgcaccg gctaccacgc catcgtcgac gccgttgaga
     4201 cggcggccgc ccgcctgagc gccgagcgtc cggcgtgagc ccgcccctcc tggtgcgggg
     4261 aggccgcgtc ctccaccccg acggcgaact gcacaagcct ttcgtggccg acgttttcgt
     4321 cgaggacggc cgcatcgtag cgctcgggca ggctgcggcg gcgcaagcgg cgcggcgccc
     4381 cgatgtctcg gtcctcgatg ccgccggcat gctcgtcgtg ccgggcttcg ttaacgcgca
     4441 ctaccac
//
LOCUS       DASQWN010000293         4222 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_421576, whole genome shotgun sequence.
ACCESSION   DASQWN010000293 DASQWN010000000
VERSION     DASQWN010000293.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 4222)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4222)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4222
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_421576"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..388)
                     /locus_tag="VE686_05665"
     CDS             complement(<1..388)
                     /locus_tag="VE686_05665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009491039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HYY83971.1"
                     /translation="MAENEFFREVEEEYRRDQLANIWKRYSGLFVALALVVVAAVGGW
                     RYWQYQERTRAEAASARYEDALRLSRDGKSDEAEKALEATVKDAPDGYRLLTRFRLAA
                     ELGRDNAEDAAKAYDALAADASVPGTW"
     gene            complement(468..1064)
                     /locus_tag="VE686_05670"
     CDS             complement(468..1064)
                     /locus_tag="VE686_05670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012332451.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NnrU family protein"
                     /protein_id="HYY83972.1"
                     /translation="MALLILGIVLFVGTHAFTMARGPRAAAIARLGEGAYKGLYTLLS
                     IAGVVLIAYGFGQYRANAWVEVWTPPVWTRHLSLILVWVAFILLAAAYLPGRIKAGAK
                     HPMLAAVKIWAFAHLIANGDLGSMILFGSLLAWAVVARISVKRRKDEVRDHGGPVAAP
                     SAVRNDVLAAVIGTALFFAFAIWAHPWLIGVAVWPGRA"
     gene            1142..2302
                     /locus_tag="VE686_05675"
     CDS             1142..2302
                     /locus_tag="VE686_05675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015952259.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY83973.1"
                     /translation="MRALSAAGLSFLVLAGAAAAARQPPLVAMTIVGPPEMVFSGKRD
                     ACDGNDVPDAPLRAFRDAEGQVVAFGLHYVNRALRGASLAALKIDCRVVLDSGANPDP
                     AAYDEHSWITATWTDDGTRVQALVHHEYQAHAHPGRCISKEYIACWTNTVLALASTDG
                     AKSFARPQPPRVVAGFPFTQDVGQGRHRGFFNPSNIFAHGPHRYFFAATTGWTGQPSG
                     ACLFRTDNPADPGSWRAFDGKAFTIAYADPYRVKAPPPTACRPIEPFPAPVGAVVRHR
                     GTGAFIAVFQAKADGRAFAQPGFYVSSSRDLLTWDTPRLVLAGKTLYDDACGAASLIS
                     YPSLVDRDAQGRNFDDVGDEAELYFATLKVDGCAVTSDRDLVRRRVGIKVWP"
     gene            2299..2841
                     /locus_tag="VE686_05680"
     CDS             2299..2841
                     /locus_tag="VE686_05680"
                     /EC_number="3.1.1.106"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011663056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="O-acetyl-ADP-ribose deacetylase"
                     /protein_id="HYY83974.1"
                     /translation="MTAPAASRLFGATTLTVIVGDITALALDAIVNAANSSLLGGGGV
                     DGAIHRAAGPKLLEECRTLGGCAPGEAKITGGYDLPARHVIHTVGPVWRGGTQGEDEV
                     LASCYRASLELAAEHGLRSIAFPAISTGVYGFPPERAAPIAVRRGREALERGAFSQVT
                     FCCFSPGSARLHADALAALA"
     gene            complement(2845..3264)
                     /gene="arfB"
                     /locus_tag="VE686_05685"
     CDS             complement(2845..3264)
                     /gene="arfB"
                     /locus_tag="VE686_05685"
                     /EC_number="3.1.1.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012254510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003747 - translation release factor
                     activity [Evidence IEA];
                     GO_process: GO:0006415 - translational termination
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alternative ribosome rescue aminoacyl-tRNA
                     hydrolase ArfB"
                     /protein_id="HYY83975.1"
                     /translation="MIVVTPRIVLDERELEETFVRASGPGGQNVNKLATAVQLRFDVR
                     RSPSLPDDVRARLERLAGSRLTGEGVLIIVAQRHRTQERNREDARERLVDLIRRAAVP
                     PTPRRPTKPTLASKRRRLDSKARRSRVKSLRGDPNSD"
     gene            3472..3753
                     /locus_tag="VE686_05690"
     CDS             3472..3753
                     /locus_tag="VE686_05690"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY83976.1"
                     /translation="MSAGENDPEDGPQKDAVKDPAWVTKLASLASKAPAGHKAYRDSR
                     WGNSKGAASEGKRLVAWTCACGWSGPARELKAGASGVCCPACGGTPHAA"
     gene            3825..4169
                     /locus_tag="VE686_05695"
     CDS             3825..4169
                     /locus_tag="VE686_05695"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY83977.1"
                     /translation="MAPRKLCLAMLGAFAASGACAEEIRLKFAPSHLHILHRQLRSYG
                     FDCPRVKDVFFLGEKDGRNHMRVVCDGVQAADLTQIRMIVGGSGHYRAEPWIAQGAGT
                     LAAAFALKSALE"
BASE COUNT          625 a         1540 c         1445 g          612 t
ORIGIN      
        1 gccaggtgcc gggcaccgac gcgtcggccg ccagcgcgtc gtacgccttg gcggcatcct
       61 ccgcgttgtc gcggccgagc tcggctgcga ggcggaagcg cgtcaggagg cggtagccgt
      121 cgggggcatc cttgacggtg gcttcgagag ccttctcggc ctcgtcgctc ttgccgtcgc
      181 gggagagcct gagggcgtcc tcgtagcgcg cgctcgcggc ctcggcgcgg gtgcgctcct
      241 ggtactgcca gtagcgccag ccgccgacgg cagcgacgac caccagggcg agcgccacga
      301 agaggccgct gtagcgcttc cagatgttgg cgagctggtc gcggcggtac tcctcctcga
      361 cctcgcggaa gaactcgttc tcggccattc tctcaaaaag ctcgtgcggc gacgggcgcc
      421 tgtgcggggc cggtcgctag cacacggcgc ccttgaaggc gagggcgtca ggcccgtccc
      481 ggccaaactg ccacgccgat gagccaggga tgcgcccaaa tggcgaaggc gaagaacaac
      541 gccgtgccga tcaccgcggc gagcacatcg ttgcgcaccg ccgaaggcgc cgcgacgggc
      601 ccgccatggt cccgcacctc gtccttgcgg cgcttgacgc tgatgcgcgc gacgaccgcc
      661 caggcgagca gcgagccgaa gaggatcatc gagccgaggt cgccgttggc gatgaggtgg
      721 gcgaaggccc aaatcttcac cgccgcgagc atcggatgct tcgcgcccgc cttgatgcgc
      781 cccggaaggt acgccgccgc aagcaggatg aaggcgaccc agacgaggat gagggacagg
      841 tgccgcgtcc acacgggcgg ggtccagacc tcgacccagg cattggcgcg gtactggccg
      901 aagccatacg cgatgagcac gacgccggcg atcgacagga gcgtgtagag gcccttgtag
      961 gcgccctccc ccagccgcgc gatggcggcc gcgcgcggcc ctcgcgccat ggtgaaggcg
     1021 tgcgttccga cgaacagcac gatgcccagg atcaaaagcg ccattgcgaa accccctcaa
     1081 tgcgccgtca acctgtcgcg gcttaacctc ccgtgtagca cggcagctcg gagcggagat
     1141 aatgcgcgcc ctctcggcag cgggtttgag ctttctggtc ctcgccgggg cagcggcggc
     1201 agcgcggcag ccgccgctcg tcgcgatgac gatcgtcggt cctcccgaga tggtgttctc
     1261 gggcaagcgc gacgcctgcg acggcaacga cgtgcctgac gcgcccttgc gcgcgttccg
     1321 cgatgccgag ggtcaggtcg tcgccttcgg cctgcactac gtcaatcggg cgctgcgcgg
     1381 cgcgagcctg gcggcgctca agatcgactg ccgggtggtg ctcgattcag gcgcgaaccc
     1441 cgatcccgca gcctacgacg agcacagctg gatcacggca acctggaccg acgatggcac
     1501 gcgcgtgcag gccctggtgc accacgaata ccaggcccac gcccacccgg gccgctgcat
     1561 ctccaaggag tacatcgcct gctggaccaa caccgtgctg gcgctcgcct ccacggacgg
     1621 ggcgaagagt tttgcccgcc cgcagccgcc gcgcgtggtg gccggcttcc ccttcactca
     1681 ggacgtcggc caaggccgcc accgcggctt cttcaacccg tcgaacatct tcgcgcacgg
     1741 gccgcaccgc tacttcttcg cagcgacgac gggctggacc ggacagccct cgggcgcgtg
     1801 cctgttccgc accgacaacc ccgccgaccc gggctcctgg cgcgccttcg acggcaaggc
     1861 cttcacgatc gcctacgccg atccgtaccg cgtgaaggcg ccgccgccga cggcgtgccg
     1921 gcccatcgag cccttcccgg caccggtcgg cgcggttgtg cgccaccgtg gcaccggcgc
     1981 cttcatcgcc gtgttccagg ccaaggcgga cgggcgcgca tttgcgcagc cgggattcta
     2041 tgtcagctcc tcgcgcgacc ttctgacgtg ggacacgccg cgcctcgtcc tcgccggcaa
     2101 gacgctctac gacgacgctt gcggcgcggc ctccctcatc tcgtacccat cgctcgtcga
     2161 ccgcgacgca cagggccgca acttcgacga cgtcggggac gaggccgagc tctatttcgc
     2221 cacgcttaag gtcgacggct gcgccgtgac ctccgaccgc gacctcgtcc gccgccgcgt
     2281 cggcatcaag gtgtggccat gaccgcgccc gctgcctcgc gcctgttcgg cgccacgacg
     2341 ctcaccgtca tcgtcggcga catcacggcc cttgcgctcg acgccatcgt caacgccgcg
     2401 aactcctcgc tgctcggcgg cggcggggtc gacggcgcca tccatcgcgc tgccggcccg
     2461 aagctcctgg aagagtgccg gacgctcgga ggatgcgcgc cgggcgaggc caagatcacg
     2521 ggcggctacg accttcccgc ccggcacgtg atccacacag tcggccccgt gtggcgcggc
     2581 ggcacgcaag gcgaggatga ggtgctggcc agctgctacc gcgcctcgct tgagctcgcg
     2641 gccgagcacg gcctgcggag catcgccttc ccggcgatct ccacgggcgt ctacggcttc
     2701 ccacccgagc gcgccgcacc gatcgcggtg cggcgcgggc gcgaggctct cgagcgtggc
     2761 gcgttctcgc aagtgacctt ctgctgtttc tcccccggga gcgcccggct gcacgcagac
     2821 gcgctcgcgg ccctcgcctg aaactcagtc cgagttgggg tcgccgcgca ggctcttcac
     2881 gcggctgcgg cgggccttcg agtcgaggcg ccggcgtttt gaggcaaggg tcggcttcgt
     2941 cggccggcgc ggcgtcggcg ggacggcggc gcggcggatc aggtcgacga gccgctcgcg
     3001 cgcgtcctcg cggttgcgct cctgcgtgcg atgccgctgc gccacgatga tcagcacccc
     3061 ctcgccggtg agccggctcc ccgccaggcg ctcgaggcgc gcgcgcacgt cgtcggggag
     3121 cgagggcgag cgccgcacgt cgaagcgcag ctgcaccgcg gtcgcgagct tgttgacgtt
     3181 ctggccgccc ggtccggagg cccgcacgaa ggtctcctcg agctcgcgct cgtcgaggac
     3241 aatccggggc gtgacgacga tcatgacgga cagcttgcta cgacagcgcc gaccgtcgcg
     3301 ccatggcggc gacgctaacg ggccgttcac aggaaaacgt catgttgcac gagggccgcg
     3361 gttgcgtatc cggcccgatg cggcgagagc cccgcctgcc ctcgaccatg tcggcagcgc
     3421 gggcctttcg tttgcgtgta tcctcccggc gcgattcgag caggagatcc gatgagcgct
     3481 ggcgaaaacg accccgagga cgggccgcag aaggacgcgg tgaaggaccc cgcgtgggtg
     3541 acgaagctcg cctcgctcgc ctcgaaggcg ccggccggcc acaaggccta ccgcgactcg
     3601 cgctggggca attccaaggg cgccgccagc gagggcaagc gtctcgtcgc ctggacctgc
     3661 gcctgtggct ggagcggacc cgctcgcgag ctcaaggctg gcgcctcggg cgtatgctgc
     3721 cccgcctgcg gagggacccc gcacgccgcg tgacccggcc gctgccgtaa agcttcagta
     3781 accatagcgt gcacagaatc agcgcatcct cgcgggttcg tccgatggcg ccacggaaac
     3841 tctgcctcgc catgctcggg gcgtttgcag catccggcgc ctgcgccgag gagatcaggc
     3901 tcaagttcgc gccgagccac ctccatatcc tgcaccggca gctgcggtcc tatggcttcg
     3961 actgcccgcg cgtgaaggac gtcttcttcc tcggcgagaa ggacggacgc aaccacatgc
     4021 gcgtcgtctg cgatggggtg caggctgccg acctcaccca gatccgcatg atcgtcggcg
     4081 gcagcggcca ctaccgcgcg gagccctgga tcgcgcaggg cgcgggcacc ttggctgccg
     4141 ccttcgcgct caagtccgcg ctggagtagc gcccgaacga gaccctcgcg cgcagacgcg
     4201 ctgcatcagc cgtacaagcc tg
//
LOCUS       DASQWN010000294         2590 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_223068, whole genome shotgun sequence.
ACCESSION   DASQWN010000294 DASQWN010000000
VERSION     DASQWN010000294.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2590)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2590)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2590
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_223068"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(76..678)
                     /locus_tag="VE686_05700"
     CDS             complement(76..678)
                     /locus_tag="VE686_05700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018322014.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome C oxidase subunit III"
                     /protein_id="HYY83978.1"
                     /translation="MRDRVVSDVSALPPYGFGAKSPIWWGTLSFVALEGMGFALAVGA
                     YLYLVHVNPKWPLNDTLPNYWPGTILLVVLVASLLPNYLAEKAGKAHDLKGARLWMAV
                     VAAMGLTAIGLRFWEFSVLDVRWDQDAYGSITWFILALHFTHLATDVGDTLVLLALFF
                     TKHARGKRFSDVSDNAFYWYFVVASWPPLYLLVYWVPRMP"
     gene            complement(678..2585)
                     /gene="ctaD"
                     /locus_tag="VE686_05705"
     CDS             complement(678..2585)
                     /gene="ctaD"
                     /locus_tag="VE686_05705"
                     /EC_number="7.1.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011971123.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004129 - cytochrome-c oxidase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c oxidase subunit I"
                     /protein_id="HYY83979.1"
                     /translation="MVVRDEDELLDTHVGEAELRARLTQVWTTSRGIVGWLSSVDHKV
                     IGRRYIVTAFIFLFLAGIGGAAMRMQLSRPENQLIGPDLYNQIFTMHGTTMMFLFAVP
                     VMEAFAVFLVPLMVGTRVIAFPRLNAFSYFVYLFGGVLIWVAFLLNTGADAGWFSYVP
                     LSGPEFSPGKRTDIWAQMITFTEVAALAVSVEIIVTVLKQRAPGMTLDRIPLFVWSQL
                     VTSFLVLFAMPAVMVASTMLILDRLIGTHFFNPAEGGDALLWQHLFWFFGHPEVYIIF
                     LPATGMVSAIVATFSRRPVFGYLPLVLSLIAVGFLSFGLWVHHMFTTGLPQLGAGFFT
                     ASSMLIAIPNGVQIFCWIVTLWSGRPVLKTPLWFVLGFFFIFVIGGLSGIMLASVPID
                     TQVHDTYFVVAHFHYVLIGGAVFPLLGAVYYWFPKVTGRMMSERLGRWHFWLAFIGFN
                     VAFFPMHILGMLGMPRRVYTYQPEMGWGTLNMIATLGSIVLFASFVVFLVNVIVSNRS
                     GDIAGDNPWDAGTLEWATSSPPPPYNFARIPVATSHEPLWLERESLPVVSGMSVENRE
                     VIVSSVTEAIPELREQTPDPSIWPFLAAIAVGIAFIASIFNPWGAVWGSALIAVTVVG
                     WFWPKSVEENE"
BASE COUNT          525 a          802 c          925 g          338 t
ORIGIN      
        1 cctgcaggtt cacggcccac gagccgggcc ccgccgcgag gcccgcccag gtcgtcccga
       61 cgtgcggtcg tgcgctcatg gcatcctcgg gacccagtag acgaggaggt acaaaggcgg
      121 ccaggaggcc acgacgaaat accagtagaa cgcgttgtcg ctgacgtcgc tgaagcgctt
      181 gccgcgcgca tgcttggtaa agaacagggc gaggaggacg agcgtgtcgc ccacgtccgt
      241 ggcgagatgg gtgaagtgga gggcgaggat gaaccaggtg atcgagccgt aggcatcctg
      301 gtcccagcgc acgtcgagga ccgagaactc ccagaagcgc agcccgatgg cggtaaggcc
      361 catggcggcg acgacggcca tccacaggcg cgcgcccttg aggtcatggg ccttgccggc
      421 tttctcggcg aggtagttgg gcagaaggct cgcgacgagg accaccagca ggatcgtgcc
      481 gggccaatag ttcggcagcg tgtcgttgag cggccacttc ggattgacgt ggacgaggta
      541 caggtacgcg ccgacggcga gggcgaagcc catgccctcg agcgcgacga agctgagggt
      601 gccccaccag atcgggctct tcgccccgaa gccatagggc ggcagcgcgg agacgtcgga
      661 gacgacgcgg tcgcgcatca ctcgttctcc tccacgctct tcggccagaa ccagccgacg
      721 accgtgaccg cgatgagcgc gctgccccag acggcccccc acgggttgaa gatcgaggcg
      781 atgaaggcga tgcccaccgc gatcgccgca aggaacggcc agatcgacgg atccggcgtc
      841 tgctcgcgca actcggggat cgcctcggtc acgctcgaga cgataacctc gcggttctcg
      901 accgacatgc cactcaccac gggcagcgac tcgcgctcga gccacagggg ctcgtggctc
      961 gtcgcgaccg ggatgcgggc gaagttgtac ggcggcggcg gcgaggaggt cgcccactcg
     1021 agcgtcccgg cgtcccatgg gttgtcgccg gcgatgtcgc cgctgcggtt gctcacgatc
     1081 acgttcacga ggaagacgac gaagctcgcg aacagcacga tggagcccag agtcgcgatc
     1141 atgttgagcg tgccccagcc catctcgggc tggtaggtgt agacgcgccg cggcatgccc
     1201 agcatgccca ggatgtgcat cgggaagaag gcgacgttga agccgatgaa ggcgagccag
     1261 aagtgccacc ggccgagccg ctcgctcatc atgcggccgg tgaccttcgg gaaccagtag
     1321 tagaccgcgc cgaggagcgg gaacacggca ccgccgatga gcacgtagtg gaagtgcgcg
     1381 acgacgaagt aggtgtcgtg cacctgcgtg tcgatcggca ccgacgccag catgatgccc
     1441 gacaggccgc caatgacgaa gatgaagaag aatccgagga cgaaccacag cggcgtcttg
     1501 agaacggggc ggccgctcca cagggtcacg atccagcaga agatctgcac gccgttgggg
     1561 atggcgatga gcatgctgga tgcggtgaag aagcccgccc cgagctgcgg cagcccggtc
     1621 gtgaacatgt ggtgcaccca caggccgaac gacaggaagc cgacggcgat gagcgagagg
     1681 acaagcggca ggtagccgaa gaccggacgc cgcgagaagg tcgcgacgat ggccgacacc
     1741 atgccggtcg ccggcaggaa gatgatgtag acctcggggt gcccgaagaa ccagaacagg
     1801 tgctgccaca gcagcgcgtc gccgccctcg gccgggttga agaagtgcgt gccgatgagc
     1861 cggtcgagga tcagcatggt cgaggcgacc atgacggccg gcatggcgaa cagaacgagg
     1921 aaggacgtga cgagctgaga ccacacgaac agcgggatgc ggtcgagcgt catgccgggc
     1981 gcgcgctgct tgagcacggt gacgatgatc tcgaccgaga cggcaagcgc cgccacctcc
     2041 gtgaaggtga tcatctgggc ccagatgtcg gtgcgcttgc cgggcgagaa ctcgggaccc
     2101 gacaggggga cgtaggagaa ccagcccgcg tcggctccgg tgttgagcag gaacgcgacc
     2161 cagatgagca cgcccccgaa caggtagacg aagtagctga aggcgttcag ccgcgggaag
     2221 gcgatgacgc gcgtgccgac catcagcggc acgaggaaga ccgcgaaggc ctccatcacc
     2281 ggcacggcga agaggaacat catcgtcgtg ccgtgcatcg tgaagatctg gttgtacaga
     2341 tcgggcccga tgagctggtt ctcgggccgc gagagctgca tccgcatcgc cgcgccgccg
     2401 atgccggcga ggaacaggaa gatgaaggcg gtgacgatgt agcgccggcc gatgaccttg
     2461 tggtcgacgc tcgacagcca gccgacgatg ccccggctcg tcgtccacac ctgcgtcagc
     2521 cgggcgcgca gctccgcctc gccgacgtgc gtgtcgagga gctcgtcctc gtcgcggacg
     2581 accaggggct
//
LOCUS       DASQWN010000295         3449 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_52342, whole genome shotgun sequence.
ACCESSION   DASQWN010000295 DASQWN010000000
VERSION     DASQWN010000295.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 3449)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3449)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3449
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_52342"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            491..2578
                     /locus_tag="VE686_05710"
     CDS             491..2578
                     /locus_tag="VE686_05710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008835958.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000150 - DNA strand exchange activity
                     [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase family protein"
                     /protein_id="HYY83980.1"
                     /translation="MKSELIQPTHLARKAIVYIRQSTPAQVVSNQESLRLQYALMQRA
                     RDLGWREADVDVIDADLGLSGASAVQRQGFKELTARVSLSEVGLILSLDVTRLARNCS
                     DWYPLLDICGLRNCLIADRDGVYDPGSPNGRLLLGLKGTISELELHTIRSRLTAGLLA
                     KAARGELALTLPVGLTRVSGDLVVKDADVEVQERLRLVFQSFLRLRTAAKVMRMFNAQ
                     GLDLPRRDRHGDLRWTRASVSAVIAILKNPAYAGAFVYGRRQASAVTSRTGRAMKRPR
                     PMQEWRFVVKDRYPAYIDWATYEKIRSILSDNRAEYMRNKTRGAPRDGDMLLHGIVWC
                     GRCGHKMFVRYKGGGEYVCNHLHTQRAAPVCQHIRADVVDNTVAQAFLAALAPAEIEA
                     LSQAHRARQQADRELRSAAEQQVERKRYQAALAERQYNKVDPDNRLVASELERRWEAA
                     LIELKMAEEALARRREQPSAAPAVIGKILTDKIVALSGRLPDLWHAPTTSDAQRKALL
                     RCLIDKVVLERGAHDVATARVIWRGGAVSELTVKLAVARLTALTRGAEMRERVIALAR
                     ADMPDEEIAALLTSEGHRSPTCAERVLPVTVRRIRQQAGLGPRTPRSRWRHSSDLLGI
                     HALARRLNIPAKWLYSQIRTGCLLIDRQPTGAYLFEDTEAVIQAIRNLRDRTVDRIDL
                     RPHQPNYTGYQHA"
     gene            complement(2566..2841)
                     /gene="tnpB"
                     /locus_tag="VE686_05715"
     CDS             complement(2566..2841)
                     /gene="tnpB"
                     /locus_tag="VE686_05715"
                     /inference="COORDINATES: protein motif:HMM:NF017528.4"
                     /note="TnpB, as the term is used for proteins encoded by
                     IS66 family insertion elements, is considered an accessory
                     protein, since TnpC, encoded by a neighboring gene, is a
                     DDE family transposase; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS66 family insertion sequence element accessory
                     protein TnpB"
                     /protein_id="HYY83981.1"
                     /translation="MMATRPVDFRKGVDGLAALVREAMGADPFSGAVYVFRAKRADRV
                     KLVFWDGTGVVLVAKRLEEGQFRWPKVQDGVMRLTAAELSALLDHAC"
     gene            complement(2868..3296)
                     /locus_tag="VE686_05720"
     CDS             complement(2868..3296)
                     /locus_tag="VE686_05720"
                     /inference="COORDINATES: protein motif:HMM:NF013677.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA];
                     GO_process: GO:0006313 - DNA transposition [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HYY83982.1"
                     /translation="MSISELTPMPERARRIEVFTGAGRRRTWPADEKAAIVAESYAPG
                     RTVCGVARRHGLTPAQLFAWRRLARPSRLPKAPALFVPAMVEPSPGPPLPPARQPRRA
                     RRPGPVMGIEVEMDGTVVRIGSAASPEAIAAVIRALKVGP"
BASE COUNT          624 a         1196 c         1089 g          540 t
ORIGIN      
        1 gccgaaggtg caatcgccct acttggccct tgtccaggtt tggcctccgc agaggaagcc
       61 caatacgcaa ccctcaaccc gcagcgaact cgagctctga agcgagcttc tcaacgaaca
      121 cctctaccga tgagggcgac gtccccgccc tggccagcgt caccgttgag gatccgcacc
      181 atccattgtt cgggcgcagc tttcgggtgc tggggtttgc gccgccgagc acggtcggcc
      241 tctcgccgtc ttacgaagta aaatatctcc acggcatcag ccttctcgtc cccgttgccg
      301 caaccgttcg gccagacagg ctggagaagc ggacgaagtt gagcgttgag gctctgcgag
      361 acctgatctc gctgatcgag ctactcgacg cgcatgatga tcgagccgaa agacctttgg
      421 tcgatacttc ccgcggcgct acggcggcag atcatcgacc agattgccgc cgtgctgacg
      481 gagacgcgcc atgaaatccg agctgatcca gccgacgcat ctggcgcgca aggcgatcgt
      541 ctacatccgg cagtcgacgc cagcccaggt cgtcagcaac caagaaagcc tccgcctcca
      601 atacgcgctg atgcagcgcg ccagggatct cggctggcgc gaggccgacg ttgacgtcat
      661 cgacgccgat ctcggcttga gcggcgcctc cgccgtccag cgccagggct tcaaggaact
      721 gacagcgcgt gtcagcctga gcgaggtcgg cctgatcctc tcgctcgacg tgacgcggct
      781 ggcccgcaac tgctcggact ggtacccact ccttgacatc tgcggcctcc ggaactgcct
      841 catcgcggat cgcgatggcg tctacgatcc cggctcgccc aacggccggc tgctgctggg
      901 gctcaagggc acgatctcgg aactcgaact gcacacgatc cgcagccgcc tcactgcggg
      961 tcttctcgcc aaggctgcgc gcggtgagct cgctctgacc ttgccggtcg ggctcacgcg
     1021 ggtctcaggt gacctcgttg tcaaggacgc cgatgtcgag gtccaggagc ggctcaggct
     1081 ggtcttccag agcttcttgc ggctgcggac cgccgccaag gtcatgcgga tgttcaacgc
     1141 tcaaggcctc gatctgccgc gacgcgaccg gcacggcgat ctgcggtgga cgcgggcgag
     1201 cgtgtcggct gtcatcgcaa tcctgaaaaa ccccgcttat gccggcgcct tcgtctatgg
     1261 gcgtaggcaa gctagcgcgg ttacaagccg aaccggtcga gcgatgaagc gaccgcggcc
     1321 gatgcaggag tggcgcttcg tcgtgaagga tcgttatcct gcctatatcg attgggccac
     1381 atacgagaag atccgtagca tcctcagcga caatcgagcc gaatacatgc gcaacaagac
     1441 caggggagcc ccgcgcgacg gcgacatgtt gttgcacggc atcgtctggt gcggccggtg
     1501 cggacacaag atgttcgtgc gctacaaggg cggcggcgaa tacgtgtgca atcatctgca
     1561 cacgcagcgc gcggctccgg tgtgccagca tatccgcgcc gacgtggtcg ataataccgt
     1621 cgcgcaggcc ttcctggccg cgctggctcc ggccgagatc gaggccctgt cacaggctca
     1681 tcgcgcccgg cagcaagcgg accgggagct tcggagtgcc gccgagcagc aggtcgagcg
     1741 caaacgctat caggccgcgc tggccgagcg gcagtacaac aaggtcgatc ccgataaccg
     1801 gctggtggcg agcgaacttg agcgccgctg ggaagcggct ctgatcgaac tcaagatggc
     1861 ggaggaggcc ctggcgcgcc ggcgtgaaca gccctcagct gcgccagccg tgatcgggaa
     1921 gatcctgacc gataagatcg tcgccctgtc cggacggctg cctgacctct ggcacgcccc
     1981 gaccaccagc gatgcgcagc gcaaggcgct cctgcgctgc ctcatcgaca aggtcgttct
     2041 cgagcgaggg gcgcacgatg tggcaacggc gcgcgtcatc tggcgaggcg gcgcggtcag
     2101 cgaactcacg gtgaagctgg ccgtcgctcg cctcacggct ctgacgcgcg gtgcggagat
     2161 gcgggagcgg gtcatcgcgc tggcccgtgc cgacatgccc gacgaggaga tcgcggcgct
     2221 cctgacgagc gaggggcatc gctcgccgac ctgcgccgag cgcgtgctgc ccgtcaccgt
     2281 acgccgaatc cgccagcagg ccggcttggg cccgaggacg cctcgttcgc gctggcgtca
     2341 ctcctcggac ctgctcggca tccacgccct tgcacggcgg ctgaacattc cggcgaaatg
     2401 gctctacagc cagatccgaa ccggctgcct cctaatcgac cgacagccaa cgggcgcgta
     2461 cctcttcgag gacacagagg ctgtcatcca ggccatccgc aacctgcgag atcgaaccgt
     2521 cgaccgcatc gacctgcggc cacatcagcc caactacaca gggtatcaac atgcgtgatc
     2581 aagcaaggcg gagagctcgg ctgcggtcag ccgcatcacc ccgtcctgga ccttgggcca
     2641 gcggaactgg ccctcttcca gccgcttggc gacaagaacc acgcccgtgc catcccagaa
     2701 gacaagcttg acccggtcgg ctcgtttggc gcggaacacg taaaccgcgc ccgagaacgg
     2761 gtcagcgccc atcgcctcac gcacgagcgc cgccaggcca tccaccccct tgcggaagtc
     2821 aaccgggcgc gtcgccatca tgacgcgcac cgcgcccgtg ggcccaatca cggtcccacc
     2881 ttcagcgccc ggatcacggc cgcgatcgcc tccgggctcg ctgctgatcc gatccgaacc
     2941 acagtgccgt ccatctcgac ctcaatcccc atgacgggcc caggccggcg ggcgcgccgc
     3001 ggctgtcgcg cgggagggag cggcggaccg ggggatggtt cgaccatggc cggcacaaac
     3061 agggccggcg ccttgggcaa gcgagagggg cgggcgagcc ggcgccaggc gaacaactgc
     3121 gccggggtga gcccgtgccg gcgcgcaacc ccgcacaccg tccgcccggg cgcgtagctc
     3181 tcagcgacga tggccgcctt ctcatcagcg ggccaggtgc gccgccgacc cgcgcccgtg
     3241 aacacttcga tgcgccgggc tcgctccggc ataggcgtaa gctctgagat cgacatgtgt
     3301 cggagctccc aaacagctcc gaatgtcacc cctcacgcct ggcgacggaa ggtgcagccc
     3361 agatgacgct tacgattcat cagccatcaa atgcgccgca aatcgccagc cttgcaaacc
     3421 tctgtctgtc accaggattc ttccggcat
//
LOCUS       DASQWN010000296         3111 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_52353, whole genome shotgun sequence.
ACCESSION   DASQWN010000296 DASQWN010000000
VERSION     DASQWN010000296.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 3111)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3111)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3111
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_52353"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..305
                     /locus_tag="VE686_05725"
     CDS             <1..305
                     /locus_tag="VE686_05725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011581877.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="PQQ-dependent sugar dehydrogenase"
                     /protein_id="HYY83983.1"
                     /translation="TRPDLADAIHHWTPAISFSGIAFYMGDALPGWRGNLLLAGLASQ
                     ALTRLTIEGQRVTGEERIRLGTRIRHVIPGPDGFVYLLTDEDNGRVLRLSPAAAAR"
     gene            complement(312..647)
                     /locus_tag="VE686_05730"
     CDS             complement(312..647)
                     /locus_tag="VE686_05730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009494734.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family protein"
                     /protein_id="HYY83984.1"
                     /translation="MSPFVTPIVLLIASNVFMTFAWYGHLKYRASALWIAVLASWGIA
                     FFEYWLAVPANRIGAAVYAPAQLKAMQEVITLVVFAAFSALYLGHPLGPSQYIGFGFI
                     ALGAFFVFR"
     gene            complement(677..1903)
                     /locus_tag="VE686_05735"
     CDS             complement(677..1903)
                     /locus_tag="VE686_05735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018041989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HYY83985.1"
                     /translation="MRQRFSGPGWAAFRSRDFRLFAVARLLYGAATQMQNVAVGWLIY
                     DLTKSAWALGLAGLAAFLPSLVLVLVTGPIADRFERRIVLLISYVLLAASALGLLSST
                     VLGLTEVWPLYALIVIAGAAKAFGHPAGQALIPSLVPREDFANAIAWNSSTWHAAIIA
                     GPSIGGLLYVLGPEVVFGTAAACFGIAAILTAFIAVRPARLVREPVSWAAVSAGLTYI
                     RSQPVLLGAVSLDLFAVLLGGATALLPIYAQDILEVGPWGLGLLRSMPGLGSVCTAVV
                     LAHVSLRRKAGRRMLQAVAIYGLAIVGFGLSQWLWLSLIFLFFTGAADMVSVYVRQTL
                     VQLETPDHMRGRVSAVNSVFVGASNELGEFESGALAALVGAVSAVVIGGVSTIAVAAL
                     WARLFPALRDRDALIP"
     gene            complement(2116..2430)
                     /locus_tag="VE686_05740"
     CDS             complement(2116..2430)
                     /locus_tag="VE686_05740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015317239.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY83986.1"
                     /translation="MGFDQYHEPPDELPKKTRTFARMIASLIEEAEAISWYEQRMAVE
                     TDPQARAIMENAQKEEFKHFGMDLEFLLRQKKDWRTELKEILFTTGDIVERGEKGEKK
                     VD"
     gene            2541..>3111
                     /locus_tag="VE686_05745"
     CDS             2541..>3111
                     /locus_tag="VE686_05745"
                     /inference="COORDINATES: protein motif:HMM:NF013718.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyl-diphosphatase"
                     /protein_id="HYY83987.1"
                     /translation="MDSLNHTLFLALNAGEAPWSGVVLFAVVAAKALILLVPLHLILI
                     WVGGERAVRFVALSALLALVIAIAINGVVGTLAYSPRPFVIGLGHTLIEHRPNSSFPS
                     NHATVFFTYAGSLAVYGRRTLAAWFIGIGLVVAWSRIYLGIHYPGDMLGAALVSGVAA
                     VLSASIMMRFGPMLLERSEALYTGLTARLS"
BASE COUNT          502 a         1073 c         1057 g          479 t
ORIGIN      
        1 ccacgcggcc ggacctcgcc gacgcgatcc atcactggac cccggcgatc tccttctccg
       61 gcatcgcctt ctacatgggc gacgcgctcc cggggtggcg cggcaacctt ctccttgcgg
      121 gccttgcctc gcaggcgctg acgcggctca ccatcgaggg tcagcgcgtc acgggcgagg
      181 agcgcatccg cctcggcacg cgcatccgcc acgtcatccc cggccccgac ggcttcgtct
      241 atctcctcac cgacgaggac aacggccgcg tgctgcgcct gtcgccggcc gccgccgcgc
      301 gctgagcggc gtcaccggaa gacgaagaag gcgccgagcg cgatgaagcc gaagccgatg
      361 tactggctcg gcccgagcgg gtggccgagg tagagggccg agaaggcggc gaagaccacg
      421 agcgtgatca cctcctgcat cgccttgagc tgcgccggcg catagacggc ggcgccgatg
      481 cggttcgccg gtaccgcgag ccagtactcg aagaacgcga tgccccagct cgccagcacc
      541 gcgatccaca gggcgctcgc gcggtatttc aggtgcccgt accaggcgaa ggtcatgaac
      601 acgttcgacg cgatcagaag cacgatcggg gtgacaaagg ggctcatggc aggctcgtcc
      661 gcgtacgggg tgatgatcag ggaatcagcg cgtcgcggtc gcgcaaggcc gggaacagcc
      721 gcgcccacag cgccgcgacg gcgatggtgc tgaccccacc gatgaccacc gccgacacgg
      781 cgccgacgag ggccgcgagc gcgcccgact cgaactcgcc gagctcgttc gaggcgccga
      841 cgaagacgct gttcaccgcc gagacgcgcc cacgcatgtg gtcgggcgtc tcgagctgaa
      901 cgagcgtctg ccggacgtag acgctcacca tgtcggcagc gccggtgaag aacaggaaga
      961 tcagcgacag ccacagccat tgcgacaggc cgaagccgac gatggcgagg ccgtagatgg
     1021 caacggcctg cagcatgcgc cgccccgcct tccggcgcag cgacacgtgc gcgaggacga
     1081 cggcggtgca cacggacccg agccccggca tgctgcgcag caggccgagg ccccacggcc
     1141 cgacctcgag gatgtcctgc gcgtagatgg gcaggagcgc cgtcgcgccg ccgaggagca
     1201 cggcgaagag gtcgagggag acggcgccga gcagcaccgg ctgcgagcgg atgtaggtga
     1261 ggccggcgct gaccgcggcc cagctcacgg gctcgcgcac cagccgcgcc ggccgcacgg
     1321 cgatgaacgc cgtcagaatc gcggcgatgc cgaagcatgc cgccgccgtc ccaaacacca
     1381 cctccggccc gagcacataa aggagacccc cgatcgacgg ccccgcgatg atggcggcgt
     1441 gccaggtgga agagttccag gcgatcgcgt tggcgaagtc ctcgcgcggc acgaggctcg
     1501 ggatgagcgc ctgtccggcc gggtggccga acgccttggc ggcgccggcg atcacaatga
     1561 gggcgtagag cggccacacc tcggtgagcc cgagcaccgt gctcgagaga aggccgagcg
     1621 cggacgcggc gagcagcacg taggagatca gaagaacgat gcggcgctcg aaccggtctg
     1681 caatcggtcc ggtgacgagc accagaacga gcgagggcag gaaggccgcc aggccggcga
     1741 ggccgagcgc ccaggcgctc ttggtcaggt cgtagatgag ccagccgacg gcgacgttct
     1801 gcatctgcgt cgcggcgccg tagaggagcc gggcgacggc aaaaagcctg aagtcgcgcg
     1861 agcggaacgc cgcccagccc ggacccgaga accgctggcg catggggctg tttcggggct
     1921 ggtgcgcccc gcgtcaaccg cgccgtggtt cgacatgccg cttcgcgctc atcacacgat
     1981 ggggttcggc cggcgctcca cgcgtccatc ctgagttggc ctgcgcagga gacagtctcg
     2041 aaggccgcaa cccgcggctg gcgcctcttg gatgcgcccg cgttgtgggc agtttgaggg
     2101 ttcggctcga gcgggctaat cgaccttctt ctcgcccttc tcgccgcgct cgacgatgtc
     2161 gccggtagtg aagaggatct ccttcagctc cgtacgccag tccttcttct ggcggagcag
     2221 gaattcgaga tccatgccga agtgcttgaa ctcttccttc tgcgcgttct ccatgatggc
     2281 acgggcctgc gggtccgttt cgacggccat gcgctgctcg taccaggaga tcgcctcggc
     2341 ttcctcgatg agcgaggcga tcatgcgggc gaaggtgcgt gttttcttcg gcagttcgtc
     2401 gggcggctcg tgatactggt cgaagcccat ggtcttccct ctcggttctc gcacgtgggg
     2461 ccggacagta agagacggtt caccaaacgg gggcaacgtc cctttgccgt gatatgccgc
     2521 catttcggtc ggaggacctc gtggatagcc tcaaccacac tctgttcctc gccctcaatg
     2581 ccggtgaagc cccttggtcc ggcgtggtcc tctttgcggt ggtggctgcg aaggcgctca
     2641 tcctcctggt gccgctgcac ctgatcctga tctgggtcgg cggcgagcgg gccgtgcgct
     2701 tcgtcgcgct ctcggccctg cttgcgctcg tgatcgccat cgccatcaac ggggtcgtcg
     2761 ggaccctcgc ctactcgccc cggccgttcg tgatcgggct cggtcatacg ctgatcgagc
     2821 accgcccgaa ctcgtcattt ccgagcaacc acgcgaccgt gttcttcacc tacgcgggct
     2881 cgcttgccgt ctatggccgg cgtacgctcg ccgcgtggtt catcggcatc ggcctcgtgg
     2941 tcgcgtggtc gcgcatatat ctcggcatcc actacccggg cgacatgctt ggcgccgccc
     3001 tcgtcagcgg cgtcgcggct gtgctctccg cctcgatcat gatgcgcttc gggcccatgc
     3061 tcctcgagcg ctccgaagcc ctatacaccg gcctgacagc ccggctgtcg c
//
LOCUS       DASQWN010000297         2986 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_421697, whole genome shotgun sequence.
ACCESSION   DASQWN010000297 DASQWN010000000
VERSION     DASQWN010000297.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2986)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2986)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2986
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_421697"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..371)
                     /locus_tag="VE686_05750"
     CDS             complement(<1..371)
                     /locus_tag="VE686_05750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015932449.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class I/II-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HYY83988.1"
                     /translation="MSDFHRIKRLPPYVFEQVNRIKAVARAGGADIIDLGMGNPDLPA
                     PAHVVQKLCETAGKPRTDRYSASKGIAGLRRAQAGYYARRFGVKLNPETQVVATLGSK
                     EGFANMAQAITAPGDVVLVPNP"
     gene            complement(448..789)
                     /locus_tag="VE686_05755"
     CDS             complement(448..789)
                     /locus_tag="VE686_05755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012335470.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY83989.1"
                     /translation="MRRRAFRALILCAVAGPLAACGETNLMRDAAFATGIATPPKEAP
                     EFIRQSRPAKLDYLPVGVSAPPREATYKTKAAVTAAEAELDATRAGNEAKGAQARQAG
                     ATPAPTAAAPR"
     gene            900..2705
                     /gene="phaC"
                     /locus_tag="VE686_05760"
     CDS             900..2705
                     /gene="phaC"
                     /locus_tag="VE686_05760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018263812.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016746 - acyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0042619 - poly-hydroxybutyrate biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I poly(R)-hydroxyalkanoic acid synthase"
                     /protein_id="HYY83990.1"
                     /translation="MDKVQAEPTASPPVPDFEQLSRNMAQFVEEAGKATAAYLKPLEQ
                     KDGGAPPPDGVAEIVRTLGQVAEAWMVDPQKAMEAQSKLGATFFDLWGATLKRMQGEE
                     APPVAKPEPRDVRFADPEWSQNPVFDFLKQAYLITSRWADTLVENAEGIDEPTRHKAR
                     FYVKQLSGALSPSNFIATNPELIRETLKESGANLVRGMKMLAEDIEAGGGQLKIRQTD
                     PGRFEVGVNMANTPGKVIFRNDLMELIQYSPTTDKVLKRPLLIVPPWINKFYILDLNA
                     DKSFIRWAVGQGLTVFCISWVNPDERHAGKGFGDYMREGIFEALDVIETATGEKKVTA
                     IGYCVGGTLLAVALAYMAAKKDKRIESATFFTTQVDFTHAGDLKIFADESQISAVEAS
                     MKGRGYLEGSSMANAFNMLRPNDLIWPYVVNVYMKGHAPFPFDLLYWNSDSTRMPAAN
                     HSFYLRNCYLENKLTKGEMEVEGVRLDLKKVTIPIFNLAAREDHIAPAKSVFLGSKAF
                     GGPVEFVLAGSGHIAGVVNPADKPKYQFWTGAPEGDDLEAWLGQAKENPGTWWPYWFK
                     WVEKQAPKRVPAREPGGGKIEPLCDAPGTYVKAKA"
     gene            2780..>2986
                     /locus_tag="VE686_05765"
     CDS             2780..>2986
                     /locus_tag="VE686_05765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019402974.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-hydroxyhepta-2,4-diene-1,7-dioate isomerase"
                     /protein_id="HYY83991.1"
                     /translation="MKLVRFGPPGQEKPGLVDTDGTIRDLSGVVSDIDGTTLSRSSLQ
                     RLRGVDPKSLPAALAGARIGPCVGN"
BASE COUNT          517 a         1013 c         1013 g          443 t
ORIGIN      
        1 gggttcggca cgagcaccac gtcgccgggc gccgtgatgg cctgcgccat gttggcgaag
       61 ccctccttcg agccgagcgt cgcgacgacc tgggtctcgg ggttgagctt cacgccgaag
      121 cggcgggcgt agtagccggc ctgggcccgg cgcaggccgg cgatgccctt ggaggccgag
      181 tagcggtccg tgcgcggctt gccggccgtc tcgcacagct tctgcaccac gtgcgcgggg
      241 gccggcaggt ccgggttgcc catgccgagg tcgatgatgt cggcgccgcc cgcacgcgcg
      301 acggccttga tccggttcac ctgctcgaag acgtaaggag gcaggcgctt gatgcggtgg
      361 aaatcggaca tgaaggcggt cccgggcaat cgcgtgagtt gagcgtggtc taacacccgt
      421 ccgccgaatc ggacaggcct gccggtccta gcgaggcgcg gcggcggtcg gagccggcgt
      481 ggcgccggcc tggcgggcct gggcgccctt ggcctcgttg cccgcgcgtg tggcgtcgag
      541 ctcggcctcg gccgccgtca cggcggcctt ggtcttgtac gtggcctcgc gcggcggggc
      601 cgagacgccg accggcaggt agtcgagctt tgcgggccgc gattgccgga tgaactcggg
      661 cgcctccttt ggaggcgtgg caatgcccgt cgcgaacgcc gcatcacgca tgagattggt
      721 ctcgccgcag gcggcaagtg gccctgcgac ggcacagagg atcagagccc ggaaagcgcg
      781 cctgcgcatg aggtaccgcg tagctggaac gaaggggacg tggcggaaat tgtcggtaga
      841 ggcttaaaat gtccaaaacg gggcttcgca aggccccaag gattcgccgg gagggagcaa
      901 tggacaaggt gcaggccgag ccgaccgcca gcccgccggt tccggatttc gagcagctgt
      961 cgcgcaatat ggcgcagttc gtcgaggagg ctggtaaggc gacggccgcc tacctcaaac
     1021 cgctcgagca gaaggacggc ggcgctccgc cgcccgacgg cgtcgccgag atcgtgcgca
     1081 ccttgggcca ggtcgcggag gcctggatgg tcgatccgca gaaggccatg gaggcgcagt
     1141 cgaagctcgg cgccacgttc ttcgacctct ggggcgcgac gctcaagcgc atgcagggcg
     1201 aggaggcgcc gccggtggcg aagcccgagc cgcgcgacgt gcgcttcgcc gaccccgagt
     1261 ggtcgcagaa tcccgtcttc gatttcctca agcaggccta cctcatcacc tcgcgctggg
     1321 ccgacaccct cgtcgagaac gccgaaggca tcgacgagcc gacgcgccac aaggcgcgct
     1381 tctatgtcaa gcagctgtcc ggcgcgctct caccctccaa cttcatcgcc accaacccgg
     1441 agctgatccg cgagacgctc aaggaaagcg gcgccaacct cgtccgcggc atgaagatgc
     1501 tcgccgagga catcgaggcc ggcggcggcc agctcaagat ccgccagacc gacccaggcc
     1561 gcttcgaggt cggggtgaac atggccaaca cccccggcaa ggtgatcttc cgcaacgacc
     1621 tgatggagct gatccagtac tcccccacca ccgataaggt gctgaagcgc ccgctcctca
     1681 tcgtgccgcc ctggatcaac aagttctaca tcctcgacct caacgccgac aaaagcttca
     1741 tccgctgggc cgtcggccag gggctgacgg tgttctgcat ctcgtgggtc aatccggacg
     1801 agcgccacgc cggcaagggc ttcggcgact acatgcgcga gggcatcttc gaggccctcg
     1861 acgtcatcga gaccgcaacg ggcgagaaga aggtcaccgc catcgggtac tgcgtcggcg
     1921 gcacgctgct cgccgttgcc ctcgcctaca tggccgcgaa gaaggacaag cgcatcgaga
     1981 gcgcgacctt cttcacgacg caggtcgact tcacccatgc gggcgacctg aagatcttcg
     2041 ccgacgagag ccagatctcc gcggtcgagg cgagcatgaa ggggcgcggc tatctcgagg
     2101 gctcgagcat ggcgaacgcc ttcaacatgc tgcgcccgaa cgacctcatc tggccctacg
     2161 tggtcaacgt ctacatgaag ggccacgcgc cgttcccgtt cgacctcctg tactggaact
     2221 ccgactcgac gcgcatgccg gcggcgaacc acagcttcta cctgcgcaac tgctacctcg
     2281 agaacaagct caccaaaggc gagatggagg tcgagggtgt ccgcctcgac ctcaagaagg
     2341 tgacgatccc gatcttcaac ctcgccgccc gcgaggacca catcgcgccg gcgaagtcgg
     2401 tgttcctcgg ctcgaaggcc ttcggcggcc cggtcgagtt cgtgctcgcc ggatcggggc
     2461 acatcgccgg cgtcgtcaat ccggcggata agcccaagta ccagttctgg accggcgcgc
     2521 ccgagggcga cgacctcgag gcatggctcg gccaagccaa ggagaatccc ggcacctggt
     2581 ggccgtactg gttcaagtgg gtggagaagc aggcgcccaa gcgcgtgccc gcgcgcgagc
     2641 ccggcggcgg caagatcgag ccgctgtgcg acgcgcccgg gacttacgtc aaggcgaagg
     2701 cctgacggtt tgtggcgctt gccgcaccgg tgcggcaagc ctaagacctc ggccaccgat
     2761 caggaactgg agaacccgca tgaagctcgt ccgctttggc ccgcccggcc aggagaaacc
     2821 cggcctcgtc gacacggacg gcaccatccg cgatctctcc ggcgtcgtgt cggacatcga
     2881 cggcacgacc ctgtcgcggt cgagcctcca gcgcctgcgc ggcgtcgatc cgaagtcgct
     2941 gcccgcagct ctggcgggcg cgcgcatcgg cccctgcgtc ggcaac
//
LOCUS       DASQWN010000298         4888 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_322852, whole genome shotgun sequence.
ACCESSION   DASQWN010000298 DASQWN010000000
VERSION     DASQWN010000298.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 4888)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4888)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4888
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_322852"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..199
                     /locus_tag="VE686_05770"
     CDS             <1..199
                     /locus_tag="VE686_05770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010686886.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="Sua5 family C-terminal domain-containing
                     protein"
                     /protein_id="HYY83992.1"
                     /translation="PGSERAQASANLSPGGDLVEAAARLFRALRSLDASGVSTIAVVP
                     IPEHGLGEAINDRLRRAAAPR"
     gene            complement(196..795)
                     /gene="wrbA"
                     /locus_tag="VE686_05775"
     CDS             complement(196..795)
                     /gene="wrbA"
                     /locus_tag="VE686_05775"
                     /EC_number="1.6.5.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012320764.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003955 - NAD(P)H dehydrogenase (quinone)
                     activity [Evidence IEA];
                     GO_function: GO:0010181 - FMN binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H:quinone oxidoreductase"
                     /protein_id="HYY83993.1"
                     /translation="MAKVLVLYYSTWGHIETMAYAAAEGAREAGAEVVVKRVPELVPS
                     HIAEQAHYKLDQAAPIATVEELPEYDAIIFGTPTRFGNMTAQMKNFLDQTGALWAQGK
                     LVGKVGSVFTSSATQHGGQESTLLTFHPVLLHHGMVVVGLPYAFAGQMGVTEVMGNSP
                     YGASTIAGGDGSRQPSEVELAGARYQGRHVAEIATKLAR"
     gene            905..1816
                     /locus_tag="VE686_05780"
     CDS             905..1816
                     /locus_tag="VE686_05780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009764781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HYY83994.1"
                     /translation="MQALAGTENLAWDDFRLVKEIAAAKGLTGAAERLGVNHSTVFRR
                     LGQLEEALRVKLFERHRTGYALTSAGEEMAALAERMEDDVASFARKLAGHAVSPAGEL
                     RVTTNDTLLLHLLTPLFAAFCAQFPEVRLDVVVANQALNLSKRDADVAVRATDNPPET
                     LVGRRVATVAWAIYGRADEFEGSAEADMSALAERPWVALGDHLGPVKAARFVRDRVAA
                     ERIVYKLNTVLGLAEAVEAGIGIGPLPCFIADARPTLVRLAAPNPDFSTGLWLLTHPD
                     LRQSARVRAFLDFMAAEIAKRRRFIEG"
     gene            1834..2328
                     /locus_tag="VE686_05785"
     CDS             1834..2328
                     /locus_tag="VE686_05785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008840322.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY83995.1"
                     /translation="MVRVNDRMQHDYAYERTEPPGGNFDPAFRPDLAPAEMLRLGVFA
                     GKYMTDCTPEFPASWFKGAKLSPERRDPSLNFFGVDASQPLSVWRAKGWLHPDDPRGW
                     FQWYCRYYSGRRMSDDARQIGRWKAIRRHVRQLENACERGDLHCRPRQRQALLHWAYD
                     SRLI"
     gene            2350..2556
                     /locus_tag="VE686_05790"
     CDS             2350..2556
                     /locus_tag="VE686_05790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011441415.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY83996.1"
                     /translation="MLGSMTTVDEIERAVSKLPPEELAAFRAWFERFEAAQLDERIVR
                     DVSAGRLDGMAEDAVAALRAARST"
     gene            complement(2633..3325)
                     /locus_tag="VE686_05795"
     CDS             complement(2633..3325)
                     /locus_tag="VE686_05795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009491025.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RlmE family RNA methyltransferase"
                     /protein_id="HYY83997.1"
                     /translation="MSEKRGSAPRALKQRVKTAKKRTVSSQKWLARQLNDPYVVRAKA
                     EGYRSRAAYKLLEIDEKYGLLKRGQRVVDLGAAPGGWSQIAAREVGSTQGEGRVVGID
                     ILPIEALPGVEFVQLDFLDPTAPDRLVAMLGGPADVVMSDMAANATGHKKTDHLRIMG
                     LAEAAAEFARAVLAPGGVYLAKVLQGGTEGTLLTDLKRDFATVRHVKPAASRADSSEL
                     YVLATGFRGRAG"
     gene            complement(3322..4428)
                     /locus_tag="VE686_05800"
     CDS             complement(3322..4428)
                     /locus_tag="VE686_05800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017486634.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Ppx/GppA phosphatase family protein"
                     /protein_id="HYY83998.1"
                     /translation="MQDDAVSASPPPLAGATSVAATEWSRPGYRDRHRRTNGTVGRAY
                     GALDLGTNNCRLLVAEPAYFGFRVIDAFSRIVRLGEGLGLGNCLSEGAIDRTIDALRV
                     CKGKMESRGVKRARMIATEACRAASNGADFVARVRDEVGLVLEIVDRRTEAYLAVTGC
                     ASLADPNAQSVIVFDIGGGSTEIAWLDGPTPGVMADPCKRIRAWDSLPVGVVTLAERH
                     GGIEVTRKSFETMVDEVSELLIDFAIIAGPACGAPGFHLLGTSGTVTTIGGIHLGLPR
                     YDRRRVDGLWMRDDEVAAVLSQLLETRFEQRAANPCIGKDRADLVLAGCAILEAIRRA
                     FPSERLRVADRGLREGILMNLMREDGVWRRGQSR"
BASE COUNT          726 a         1709 c         1712 g          741 t
ORIGIN      
        1 gcccgggtcg gagcgggcgc aggcaagtgc gaacctcagc ccgggaggcg atctcgtcga
       61 agccgccgcg cgcctctttc gggccctgcg ctctctggac gcatccggtg tgtccaccat
      121 cgcggtggtg ccgatcccgg agcacggcct cggcgaggcg atcaacgacc gcctgcgccg
      181 cgcggccgcg ccgcgctagc gggcgagctt cgtcgcgatc tcggcgacgt gccgcccctg
      241 gtagcgggcc ccggcaagct cgacctcgct cggctggcgc gaaccgtctc cgcccgcgat
      301 ggtcgacgcc ccgtagggcg agttgcccat cacctcggtc acgcccatct gcccggcaaa
      361 cgcatagggc aggccgacga ctaccattcc gtggtgcagc agcaccgggt ggaaggtcag
      421 gagcgtcgac tcctggccgc cgtgctgggt cgccgacgac gtgaacaccg acccgacctt
      481 gccgacgagc ttgccctgcg cccaaagcgc gccggtctgg tcgaggaagt tcttcatctg
      541 cgccgtcatg ttgccgaagc gcgtcggcgt gccgaagatg atggcgtcgt actcgggaag
      601 ctcctcgacc gttgcgatcg gcgcggcttg gtcgagcttg tagtgcgcct gctcggcgat
      661 gtgcgacggc acgagctccg ggacccgctt gacgacgacc tcggcgcccg cctcgcgcgc
      721 cccctccgcg gccgcatagg ccatcgtttc gatgtgcccc caggtcgaat aatagagcac
      781 cagaaccttc gccacagaca ttctccaccg tgtcgggccc ggccctgccg cggtcccatg
      841 gatgggagat gagctttccg gcgcgcaata ccagggctat tgttgcagga cgtatcttgc
      901 ggagatgcaa gctttggcgg ggaccgagaa tctggcctgg gacgacttcc ggctcgtcaa
      961 agagatcgct gccgcgaagg gtctcacggg cgccgccgag cgcctcggcg tcaaccactc
     1021 gaccgtgttc cggcgcctgg ggcagctcga ggaggcgctc cgcgtcaagc tcttcgagcg
     1081 ccaccgcacc ggctacgcgc tgacgagcgc cggcgaggag atggcggcgc tcgccgagcg
     1141 catggaggac gacgtcgcct ccttcgcccg caagctcgcc ggccacgccg tctcgcctgc
     1201 cggcgagctg cgcgtgacga ccaacgacac cctgctcctg caccttctca cgccgctgtt
     1261 cgcggccttc tgcgcgcagt ttcccgaggt gcggctcgac gtcgtcgtcg ccaaccaggc
     1321 gctcaacctg tcgaagcgcg acgccgacgt ggcggtccgc gcgaccgaca atccccccga
     1381 gaccctcgtc ggacgccgcg tcgcgacggt cgcctgggcc atctacggcc gcgccgacga
     1441 gttcgaggga tcggccgagg cggacatgag cgcccttgcc gagcgcccct gggtcgcgct
     1501 tggcgaccac ctcggcccgg tcaaggcggc gcgcttcgtg cgcgaccggg tcgccgccga
     1561 gcgcatcgtc tacaagctca atacggtgct cggcctcgcc gaggccgtcg aggccggcat
     1621 cggcatcggg cccctgccct gcttcatcgc cgacgcgcgg ccgacactgg tgcgccttgc
     1681 ggcgcccaac ccggacttct cgacggggct gtggcttctg acgcaccccg acctgcggca
     1741 gtcggcccgg gtgcgtgcgt tcctcgattt catggccgcc gagatcgcca agcgtcggcg
     1801 attcatcgag gggtgaccca ggtgcaaaga gcgatggtga gggtcaacga tcgcatgcag
     1861 cacgactacg cctacgagcg gacggagccg cccggcggca acttcgatcc cgccttccgc
     1921 ccggacctgg cgcccgcgga gatgctgcgg ctcggcgtct tcgcgggcaa gtacatgacg
     1981 gattgcacgc ctgagttccc ggcgagctgg ttcaagggcg cgaagctctc accggagcgg
     2041 cgcgatccat ccctcaactt cttcggcgtc gacgccagcc agcccttgtc ggtctggcgc
     2101 gccaagggct ggctccatcc cgacgacccg cgcggctggt tccagtggta ctgccgctac
     2161 tactctggcc gccgcatgag cgacgacgcc cgccagatcg ggcgctggaa ggcgatccgc
     2221 cgccatgtgc gccagctcga gaacgcgtgc gagcgcggcg acctgcactg ccgcccgcga
     2281 cagcggcagg ctctcctgca ctgggcctac gacagccgcc tgatctgacg cgccagggcg
     2341 agctgtgcca tgctgggatc catgacgacc gtggatgaaa tcgagagagc cgtctcgaag
     2401 cttccgccgg aggagcttgc cgccttccgt gcgtggttcg aacggttcga agcggcccag
     2461 ctcgatgagc gcattgtgcg ggacgtgtcg gccgggaggc ttgatgggat ggccgaagat
     2521 gccgtcgccg cgctccgggc ggctcgctcc acctgagtcg acgacgacct gctgtggttc
     2581 tggatcggct ctcacgcgga ctacgaccgc ctgatccggt gcggttggag ccctatccgg
     2641 cccggcccct gaagcccgtg gcgaggacgt agagttccga cgaatcggcg cggctcgcgg
     2701 cgggcttgac gtggcgcacc gtcgcgaaat cgcgcttcag atcggtcagc agcgtccctt
     2761 cggtgccgcc ctgcaggacc tttgcgaggt acacgccccc gggcgcgagc acggcacggg
     2821 cgaactcggc cgccgcttcg gcgaggccca tgatgcgcag gtggtcggtc ttcttgtgcc
     2881 cggtggcgtt cgcggccatg tcggacatga cgacgtcggc ggggccgccg agcatggcga
     2941 cgagccggtc gggcgccgtc gggtcgagga agtcgagctg cacgaactcg acgccgggca
     3001 gcgcctcgat gggcaggatg tcgatcccga cgaccctgcc ctcgccttgg gtgctgccga
     3061 cctcgcgcgc ggcgatctgc gaccagccgc caggggcggc gccgagatcg acgacccgct
     3121 gcccgcgctt gagcaggccg tacttctcgt cgatctcgag aagcttgtag gcggcgcgcg
     3181 agcggtagcc ctccgccttg gcgcggacga cgtaggggtc gttgagctgc cgcgcgagcc
     3241 acttctgcga cgagacggtc cgcttcttcg ccgtcttgac ccgctgcttc agggcgcgcg
     3301 gtgccgaccc gcgcttctcg ctcaccggct ctgcccccgg cgccagaccc cgtcctcgcg
     3361 catcaggttc atgaggatgc cctcgcgcaa gccccgatcg gcgacgcgca ggcgctcgga
     3421 aggaaaggcg cggcggatgg cctcgaggat ggcgcagccc gcgagcacga ggtcggcccg
     3481 atccttgccg atgcacgggt tggccgcgcg ttgctcgaag cgggtctcga ggagctgcga
     3541 cagcaccgcg gcgacctcgt cgtcgcgcat ccacaggccg tcgacgcgcc ggcggtcgta
     3601 gcggggaagg ccgaggtgga tgccgccgat ggtcgtcacc gtgccggagg tgccgagcag
     3661 gtgaaatccc ggggcgccgc aggccggccc ggcgatgatg gcgaagtcga tcaggagctc
     3721 ggagacttcg tcgaccatgg tctcgaagct cttgcgggtg acctcgatgc cgccgtggcg
     3781 ctcggccaag gtgacgacgc caaccgggag cgagtcccag gcgcggatgc gcttgcacgg
     3841 atcggccatg acgccgggcg tcggtccgtc gagccaggcg atctcggtcg agccgccgcc
     3901 gatgtcgaac acgatgaccg actgagcgtt cggatccgca agcgaggcac agcccgtcac
     3961 ggcgaggtag gcctcggtgc gccggtcgac gatctcgagc acgagcccga cctcgtctcg
     4021 cacgcgggcg acgaagtcgg cgccgttgct ggccgcccgg catgcctcgg tggcgatcat
     4081 gcgggcccgc ttgacgccgc gcgattccat cttgcccttg cagacgcgca gggcgtcgat
     4141 ggtgcggtcg atggcgccct cgctgaggca attgccgagg ccgagcccct cgcccaggcg
     4201 cacgatgcgt gagaaggcgt cgatgacgcg gaaaccgaaa taggcgggct cggcgacgag
     4261 gagacggcag ttgttggtgc cgagatcgag cgcaccatag gcgcggccga ccgtgccgtt
     4321 ggtccggcga tgccggtcgc gatacccggg ccgcgaccac tccgtggcgg ccacgctcgt
     4381 cgcgccggcc aggggtggcg gcgacgccga aactgcatcg tcttgcatgc gcaagcgaat
     4441 cctgagcggc gccggccgga agcgacggga cgccggtgtt gccgcgagag tagcaaggcg
     4501 tgcgccgtcc tgccaagccc gatcgggttg ccggggcggt ggcggacagc tcttgcaaga
     4561 acgcaaagtg ctgcctgttt aagttgcgac acttggcggc tgaactgggc aaatcccggg
     4621 tgaaaaccac gtgagccggc agaaaaccac gaggcgccag agcttaagat tcggcagcat
     4681 ctcggcaatc cgcgctcatg agagagactt gtcccaccac gagcgctggg gcgccgttca
     4741 gatcgagccc gccgccgtca atgggcggaa aggtcgaagg ggtcgccctg tctcaagccg
     4801 gccgccgccc tgccgtcgcc cgctcgaccg aaggagcttc cggcaggcgc atacgcttcc
     4861 ggcccggcgc gcgggcacgc cgactcag
//
LOCUS       DASQWN010000299         2465 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_323098, whole genome shotgun sequence.
ACCESSION   DASQWN010000299 DASQWN010000000
VERSION     DASQWN010000299.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2465)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2465)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2465
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_323098"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..562)
                     /locus_tag="VE686_05805"
     CDS             complement(<1..562)
                     /locus_tag="VE686_05805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009763147.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HYY83999.1"
                     /translation="MSDPLLDIEGISASYGQAEILFDVSLRLGRGEVAALMGRNGAGK
                     TTTLKAIMGLVQRRAARLVFDGHSIGTLASYRIARLGLGYVPEERRIFTDLTVYENLE
                     VGRRPARAGREPWTAERLFRIFPNLAEMQGRRASHMSGGEQQMLTIARTLMGNPDILL
                     LDEPSEGLAPIIVQAIGRLIRSLRDMG"
     gene            complement(559..1338)
                     /locus_tag="VE686_05810"
     CDS             complement(559..1338)
                     /locus_tag="VE686_05810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018261763.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HYY84000.1"
                     /translation="MTLLDVQGVCKAFGGVVAAKDVSFSVGAGELLALIGPNGAGKTT
                     TFNIVGGQLAPDAGNVVLEGETVTRLTPREKFRRGIGRTFQVAQTFPSMTLAENVQMA
                     LISHRGRTASVGPPVRGLFRDEALAVLARVGMAEAADHPCSTLAYGDVKRVELAIALA
                     SEPKLLLMDEPTAGMAPKERAALMALVARIARERRIGVLFTEHDMPAVFAHADRILVL
                     MRGEIIAGGSPEEVRANARVKQVYLGESGVAAALKAREAGA"
     gene            complement(1335..>2465)
                     /locus_tag="VE686_05815"
     CDS             complement(1335..>2465)
                     /locus_tag="VE686_05815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009763149.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HYY84001.1"
                     /translation="GGMGSIVGAFLAALIIGQLHAFGILIFPKVTLVLVFLLMALVLV
                     VRPYGLLGRPEVLQGGTVALRTLRPWGRWEHIAAAAVLAGLALLPLVADAYVIKVATE
                     VLIFALFAFSLNLLVSTGGLVSFGHAAYFGLGAYGAALSFSALGLRMEAALALAPLVA
                     ALGAAVVGIFVVRLSGIYLAMLTLAAAQIVYAVAFQWVEVTGGDNGLLGIWPAPWASG
                     RTTYYWLTLAVTGLAVAGLRHVIYAPFGYGLRASRDSVLRAEAIGIDVRRQRWLAFVL
                     AGAAAGVAGGLYAFSKGSIDPSALGIPTSVDALTMLLLGGLDTVMGPLAGAAVLQVLK
                     DQVMPVTQYWRLALGLSIIAMVLIFPAGLVGAVERLRERLAR"
BASE COUNT          404 a          836 c          920 g          305 t
ORIGIN      
        1 cgcccatgtc gcgtaaggag cggatgagcc ggccgatcgc ctggacgatg atcggcgcca
       61 gcccctcgga gggctcgtcg aggagcagga tgtcggggtt gcccatcagg gtgcgggcga
      121 tggtgagcat ctgctgctcg ccgcccgaca tgtggctggc gcgccggccc tgcatctcgg
      181 cgaggttcgg gaagatgcga aagaggcgct cggccgtcca gggctcgcgg ccggcgcggg
      241 ccgggcggcg cccgacctcg aggttctcgt acacggtgag gtcggtgaaa atgcgcctct
      301 cctcgggcac gtagccgagg ccgaggcggg cgatgcggta gctcgcaagc gtgccgatcg
      361 agtgtccatc gaagacgagc cgagccgccc ggcgctgcac gagccccatg atggccttga
      421 gggtcgtcgt cttgccggcg ccgttgcggc ccatgagcgc cgcgacctcg ccccgcccca
      481 gcctgagcga cacgtcgaac aggatctcgg cctggccgta tgaggcggaa atgccctcga
      541 tgtcgaggag tgggtcgctc atgcgccggc ctcgcgggcc ttgagcgcgg ccgcgacgcc
      601 gctctcgccg aggtagacct gcttgacccg ggcgttggcg cggacctcct cgggcgagcc
      661 gccggcgatg atctcgccgc gcatgagcac caggatgcga tcggcatggg cgaagaccgc
      721 cggcatgtcg tgctccgtga agagcactcc gatgcggcgc tcgcgcgcga tcctcgcaac
      781 gagcgccata agcgcggcgc gctcctttgg cgccatgccg gcggtgggct cgtccatgag
      841 aagcagcttc ggctcgctcg cgagcgcgat ggcaagctcg acgcgcttca cgtcaccgta
      901 cgcaagcgtg gagcaggggt ggtccgccgc ctcggccatg ccgacgcggg cgagaaccgc
      961 caaggcctca tcccggaaca gcccgcgcac cggcggcccg accgacgcgg tacggccgcg
     1021 gtggctgatg agcgccatct ggacgttttc ggcgagcgtc atagacggga aggtctgggc
     1081 gacctggaag gtgcggccga tgcctcgccg aaatttctcg cgcggcgtca ggcgggtcac
     1141 ggtctcacct tccagaacga cgttgcccgc gtccggcgca agctgaccgc cgacgatgtt
     1201 gaaggtggtg gtcttgccgg cgccgttcgg accgatgagg gcgaggagtt ctccggcgcc
     1261 gacggaaaac gagacgtcct tggcggcgac gacgccgccg aacgccttgc acacgccctg
     1321 cacgtcgaga agcgtcatcg ggccaggcgc tcgcgcagcc gctcgaccgc gccgacgagc
     1381 ccggccggga agatcagcac catggcgatg atgctcaggc cgagcgccag ccgccagtac
     1441 tgcgtcaccg gcatgacctg gtccttcagc acctgcagca ctgcggcacc cgcgagcggc
     1501 cccatgacgg tgtcgaggcc gccgagcagc agcatcgtga gggcgtcgac ggaggtcgga
     1561 attccgagcg cgctcgggtc gatggagccc ttcgagaagg cgtagagccc gcccgcgacc
     1621 cccgccgccg cgccggcgag gacgaaggca agccagcgct gccggcggac gtcgatgccg
     1681 atggcctcgg cgcgcagcac cgagtcgcgg ctggcgcgca ggccgtagcc gaagggcgcg
     1741 tagatgacgt ggcgcaggcc cgcgacggcg aggcctgtca cggccagcgt cagccagtag
     1801 taggtggtgc gccccgatgc ccacggtgcc ggccagatgc cgaggaggcc gttgtcgccg
     1861 cccgtcacct cgacccactg gaacgcgacg gcgtagacga tctgcgccgc cgccagcgtc
     1921 agcatggcga ggtagatgcc ggacaggcgc acgacgaaga tgccgacgac ggcagcaccg
     1981 agggcggcga cgaggggcgc gagggcgagc gccgcctcca tgcgcagccc cagcgcgctg
     2041 aaggacagcg cagcgccata ggcgccgagc ccgaagtagg cggcgtgccc gaagctgacg
     2101 aggccgccgg tcgagacgag caggttcagg ctgaaggcga agagggcgaa gatcagcacc
     2161 tcggtcgcga ccttgatgac gtaggcgtcc gcgacgagcg gcaggagcgc gagcccggcg
     2221 aggaccgcgg cggcggcgat gtgctcccac ctcccccacg gccgcagcgt ccgcagggcc
     2281 acggtcccgc cctgcagcac ctcgggccgg ccgagcaggc cgtacggccg cacgacgagg
     2341 acgagggcca tgaggaggaa gacgaggacg agggtcacct tcgggaagat gaggatgccg
     2401 aaggcgtgca gctggccgat gatcagggcc gcgaggaagg cgccgacgat gctgcccatg
     2461 ccgcc
//
LOCUS       DASQWN010000300         2032 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1343082, whole genome shotgun sequence.
ACCESSION   DASQWN010000300 DASQWN010000000
VERSION     DASQWN010000300.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2032)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2032)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2032
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1343082"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..146
                     /locus_tag="VE686_05820"
     CDS             <1..146
                     /locus_tag="VE686_05820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004152765.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="retA reverse transcriptase"
                     /protein_id="HYY84002.1"
                     /translation="WRRSLRRRSQTDDTVWTRVAKLADDHLPKPRILHPWPNERVAAK
                     HPR"
     gene            709..1950
                     /locus_tag="VE686_05825"
     CDS             709..1950
                     /locus_tag="VE686_05825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011239636.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IS110 family transposase"
                     /protein_id="HYY84003.1"
                     /translation="MEVLHPRCAGLDVHRDSVVACARVVDQGRVEHLAETFGTTTSEL
                     ERLSRWLAGHGITHAAMEATGVYWKPVWAVLAEAFELVLANAMHVRNVPGRKTDVNDA
                     TWLADLLAHGLIRASFVPPMAIQALRDLTRARKQLTREKASHVARVDKLLQAANLKLG
                     SVLSDIMGDSGRAILDALAAGESDPERLAGRVRTRIRASRAEVLEALRGRLSDHQRLL
                     LRIHLGQADAIDAAVAGIDAELGERLEPFREAAARLTTIPGVSALSAAVILAEIGPDM
                     SRFPTAAHLVSWAGLCPRNDESAGKRRSTRLRQGAPWLKTLLVQTAWCAARAKGTYLR
                     ALFGRLKARRGPRKAIVAVAAAILTAAYWMLRRGVAYADLGADHFERVERTRLAARLA
                     RKLNELGFTCSLAPAHGQVSV"
BASE COUNT          301 a          760 c          690 g          281 t
ORIGIN      
        1 tctggcgacg ttcgctccgg cggcgcagcc agaccgacga taccgtgtgg acccgggtag
       61 cgaagctggc cgacgaccac ctcccgaaac cgaggatcct tcatccctgg cccaacgagc
      121 gggtcgccgc caagcacccg aggtaggagc cggatgcccg aattgggcac gtccggatct
      181 gtgcgggggg cacggggcaa cccgcgtccc taccgcgata gtacagccaa acgacgtggc
      241 tgatgacctc gaccgggtac cgatggccgg cgtagggcga cttggaggcc ggagagctca
      301 ttccgagcgt ctaccggcta cggccgcgcc cgcaagcccc gctcaacttg actgtgagac
      361 tgttggcgtc gtccggcagg tctgacccgc aagttgattg acccgtgtca tggcaccgac
      421 gtgtcggccg gccgggcgat gcccggcgat cgggcgggag gtgacctcat aggagttgcc
      481 caccggaagc ggcccgaccc acgtcggatg aaacctcggc taagatgtga tgcggcgccg
      541 gcacagaggt cggtccgcgc ttggtgccgc gagcccgcat aggagttgga cccggagccc
      601 cacgcgcacc ccgtactgtc gccacgccca ccagggccgg agcacgcatc ctagagttcg
      661 acatcgtggg cttctcgccg gcgccgcgcc agaggcgagg agggggtcat ggaggtcttg
      721 catccgcgct gcgccgggct cgacgtccac cgcgacagcg tggtggcctg cgcccgggtg
      781 gtcgaccaag gacgtgtcga gcacctggcc gagaccttcg gcaccacgac gtcggagctg
      841 gagcgcctgt cgcgctggct cgccggccac gggatcaccc acgccgcgat ggaggcgacc
      901 ggcgtgtact ggaagccggt ctgggcggtc ctggccgaag cgttcgagct cgtgctcgcc
      961 aacgccatgc acgtcaggaa cgtgcccggc cgcaagaccg acgtgaacga cgcgacctgg
     1021 ctggccgacc tgctggcgca tggcctgatc cgcgccagct tcgtcccgcc gatggcgatc
     1081 caggcgctgc gggacctcac ccgggcccgc aagcagctca cgcgcgagaa ggcctcgcac
     1141 gtcgcgcgcg tcgacaagct cctgcaggcc gccaacctca agctcggctc ggtgctctcc
     1201 gacatcatgg gcgacagcgg gcgggccatc ctcgacgcgc tggccgcagg ggagagcgat
     1261 cccgagcgcc tcgccggccg ggtccggacc cgcatccgcg cctcccgcgc cgaggtcctc
     1321 gaggccctcc ggggccgcct atccgaccat cagcgtctgc tgctccgaat ccacctcggc
     1381 caggcggatg cgatcgacgc cgccgtcgcc gggatcgacg ccgagctggg cgagcgcctc
     1441 gaacccttcc gcgaggccgc cgcgcggctg accaccatcc ccggcgtgag cgcgctctcg
     1501 gccgccgtca tcctcgccga gatcggcccc gacatgagcc gcttccccac cgccgcccac
     1561 ctggtctcct gggccggcct ctgccccagg aacgacgaga gcgcgggcaa gcgccgctcg
     1621 accaggctgc gccagggggc gccgtggctg aagaccctgc tggtgcagac cgcctggtgc
     1681 gcggcccgcg ccaagggcac ctatttgcgt gccctgttcg ggcgcctcaa ggcgcgccgc
     1741 ggcccccgca aagccatcgt cgcggtcgcc gcggccatcc tcaccgccgc ctactggatg
     1801 ctccgccgcg gcgtcgccta cgccgacctc ggcgccgacc acttcgaacg agttgaacgg
     1861 actcggctcg ccgctcgcct cgcccgcaaa ctcaatgaac tcggcttcac ctgctccctg
     1921 gctcccgctc atgggcaggt ttctgtctag cggtcccgga gcgggatccg accctgccgt
     1981 ggaggtccgc gttcgcgcgg tccgtcggcg cgactggccg acggaggagc ag
//
LOCUS       DASQWN010000301         3454 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_919601, whole genome shotgun sequence.
ACCESSION   DASQWN010000301 DASQWN010000000
VERSION     DASQWN010000301.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 3454)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3454)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3454
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_919601"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..563)
                     /locus_tag="VE686_05830"
     CDS             complement(<1..563)
                     /locus_tag="VE686_05830"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY84004.1"
                     /translation="MPRLIAAVYADRGNADRALQALIAGGVARDRIELSGGDRHPSSE
                     LAPGREVPQSSRLVALGLPEADRRLFETALARGQVLVSARVADDRDGDRAAQILEMFD
                     PVDLDARSAQAGGGQGGGIGAGVDIGAPLGAGLTAGSGMGTDNVSATPGMGTLTGDTS
                     TLGTADLGTPGMSLSDQGLSATSTGGRR"
     gene            complement(625..1443)
                     /locus_tag="VE686_05835"
     CDS             complement(625..1443)
                     /locus_tag="VE686_05835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018098843.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SIR2 family protein"
                     /protein_id="HYY84005.1"
                     /translation="MIGDLARAIRERECILFAGAGVSMTVGLPSWRTLMEHMGAQLGF
                     DPEVFADPEVSYFTLAEYYRLQEGSIGPLRSWMDRNWSIPEDRLRTSKVHELIVRLDF
                     PIVYTTNFDRNLEEAFHLHGKPFVKVANAKDVARVRDGVTQIIKFHGDFEDDKSLVLA
                     ETDYFDRLAFASPLDVKFRADALGKTILFVGYSLSDMNIRLLLYRLWQTWRDSGYEQN
                     RPPSYVFMMRPNPIEEAVLKQWGIRMVTEDTDRPEDALEVFLTKLADEVGSRPA"
     gene            complement(1440..1988)
                     /locus_tag="VE686_05840"
     CDS             complement(1440..1988)
                     /locus_tag="VE686_05840"
                     /inference="COORDINATES: protein motif:HMM:NF013854.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0047429 - nucleoside triphosphate
                     diphosphatase activity [Evidence IEA];
                     GO_process: GO:0009143 - nucleoside triphosphate catabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="non-canonical purine NTP pyrophosphatase"
                     /protein_id="HYY84006.1"
                     /translation="MRLRFLSSNGQKVAEVRTILSPAGIEVVPVERKLDEIQTHDIEQ
                     LVRDKCIRAFRLIGRPVFVEHTALHIDALNGFPGGLTQLFWDTVGPERVAALFGRDAS
                     PAVARTCIGYCDGCRIHHFEGTIDGLIAETPRGDRAGWDCIFIPRGERRTFAEMQDEK
                     NKISMRRRALDSFAAFLKSEAA"
     gene            2176..2958
                     /locus_tag="VE686_05845"
     CDS             2176..2958
                     /locus_tag="VE686_05845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015933992.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transglycosylase SLT domain-containing protein"
                     /protein_id="HYY84007.1"
                     /translation="MAIFLSLGLAAAWAQEGALPTAADLPVLPLPPAVEGLVAFPQPY
                     ARGRAAHLALITRQAVQEGLPPAVADAVAHVESAYNPGAVGGVGEIGLMQIRPTTAAM
                     LGYRGSITGLFEPETNVRYSVAYLAGAWRLASGDLCRTLMKYRAGHGEERMTPLSVEY
                     CRRARSFLAAIGSPLGAGALPSADAVPFGPLAARRPTSLRVAALGAPKLTEAQASALA
                     AARERDRARKAKSRQLWAAHAARLNAIEAKLKPSQLRIAAGL"
     gene            3050..>3454
                     /locus_tag="VE686_05850"
     CDS             3050..>3454
                     /locus_tag="VE686_05850"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY84008.1"
                     /translation="MPKIETARRIDPEAGRRRAARCLAAALAGACLVLPLETSVVQAG
                     DDAGVHEFLMRESGRGRSAAPEPARYQPAPTVPAPVTQAAATVQQYFDAPVQRAPARA
                     KVAPPVRAEFTNLQRTVDLAKPTQSDTQRGLGG"
BASE COUNT          515 a         1202 c         1196 g          541 t
ORIGIN      
        1 cgccgcccac cagtggaagt ggcgctcagg ccctggtcgg acaggctcat gcccggtgtg
       61 ccgaggtcgg cggttccaag cgtgctggtg tcacccgtca gcgtgcccat cccgggtgtg
      121 gccgagacgt tgtcggtgcc cataccggag ccggcggtca gacccgctcc gagcggagcg
      181 ccgatatcga cgcccgcgcc gatcccgccg ccctggccgc cgcctgcttg ggccgagcgc
      241 gcgtcgaggt cgaccggatc gaacatctcc aggatctgtg ccgctcgatc gccgtcgcgg
      301 tcgtccgcaa cgcgcgcgga gacgagcacc tggccgcgcg cgagcgcggt ctcgaacagg
      361 cgccggtccg cctcgggcag cccgagtgcg acgaggcgcg aggattgcgg gacttcgcgt
      421 ccgggcgcga gctcggagga gggatgccga tcgcctcccg agagctcgat gcggtcgcgg
      481 gctacgcccc cggcgatgag cgcctgcagc gcgcggtcgg cgttgccgcg gtccgcgtac
      541 accgcggcga tgaggcgagg catggctttc tcctgcaaac ggtctcgctc tagagcgggt
      601 gcctgcgggc ccctgttccg cgcctcatgc cgggcgggag ccgacctcgt cggcgagctt
      661 cgtcaggaac acctcgaggg cgtcctcggg ccggtccgtg tcctcggtga ccatgcggat
      721 gccccactgc ttgaggaccg cctcctcgat ggggtttggg cgcatcatga agacgtaaga
      781 gggcggccgg ttctgctcgt atcccgagtc ccgccacgtc tgccacaggc ggtacagaag
      841 caggcggatg ttcatgtcgg acaggctgta cccgacgaac aggattgtct tgccgagcgc
      901 gtcggccctg aacttcacgt cgagggggga tgcgaaggcg aggcggtcga agtagtcggt
      961 ctcggcgagc accagcgact tgtcgtcctc gaagtcgccg tggaacttga tgatctgagt
     1021 gacgccgtcg cgcacccggg cgacgtcctt cgcgttggcc accttcacga agggcttgcc
     1081 atgaaggtgg aaggcctctt ccaggttacg gtcgaagttc gtcgtgtaga cgatggggaa
     1141 gtcgagccgc acgatcagct cgtgcacctt cgaggtccgc agccgatcct ccggaatgct
     1201 ccagttgcgg tccatccagc tgcggagggg gccgatgctg ccttcctgca ggcggtagta
     1261 ctcggcaaga gtgaagtagc tgacttcggg atcggcgaag acctccgggt cgaacccgag
     1321 ctgcgcgccc atgtgctcca tgagcgtgcg ccaggacggc aggccgacgg tcatcgacac
     1381 cccggcaccg gcgaagagga tgcactcccg ctcgcggatt gctcgggcga ggtcgccgat
     1441 catgccgctt cgcttttcag gaacgccgcg aagctgtcga gcgcgcggcg gcgcatggaa
     1501 atcttgttct tctcgtcctg catctccgca aaggtccggc gttcccctcg cggaatgaag
     1561 atgcagtccc aaccggcccg atcgccgcgg ggcgtctccg cgatcaggcc gtcgatcgtg
     1621 ccctcgaagt ggtggatgcg gcagccgtcg cagtaaccga tgcaggtgcg agcaacagcc
     1681 gggctcgcat cccggccgaa aagtgctgcg acgcgctcag gcccgaccgt gtcccagaac
     1741 agctgcgtca ggccgcccgg aaagccgttg agagcatcga tgtggagcgc agtatgctcg
     1801 acgaaaaccg gccggccgat caggcggaaa gcgcgaatgc acttgtcgcg aaccagctgc
     1861 tcgatgtcgt gcgtctggat ctcgtcgagc ttgcgctcga cggggacgac ctcgatcccg
     1921 gccggcgaca ggatcgtcct gacctccgcc accttctggc cgttgctcga caggaagcgc
     1981 agccgcatgc ctcaagcccg cacgcgccaa gctcgggcgt ggcgctcgcg ttcgataacg
     2041 cgccgactcg caaaactgct ccggcggcca ctgtctggcc ggattccgga acaatcgtcg
     2101 ccctggccgc ttggagttcc caaaggacgt tccttgcccg gattaggttc tgatgccgcg
     2161 cacggcgcgt gcgcgatggc gatcttcctg tcgctcggcc ttgcggctgc gtgggcgcag
     2221 gaaggcgccc tgccgactgc ggccgacctc cccgtcctgc cgttgccgcc tgcggttgag
     2281 ggtcttgtgg cttttccgca gccctacgcc cggggccgcg ccgcgcatct cgcgctcatc
     2341 acccgccagg cggttcagga ggggctcccg cccgccgtcg ccgatgcggt ggcgcacgtg
     2401 gagagcgcct acaacccggg agctgtcggc ggcgtcggcg agatcggtct catgcagatc
     2461 cggccgacca ccgccgccat gctcggctac cgcggctcga tcaccggact gttcgagccc
     2521 gagaccaacg tccgctattc ggtggcgtac ctcgccggcg cgtggcgcct cgccagtggc
     2581 gatctgtgcc gcacgctgat gaaataccgc gctggacacg gcgaggagcg catgacgccg
     2641 ctctcggtcg agtactgccg ccgggcacgc agcttcctcg cggcaatcgg atcgccgctc
     2701 ggcgccgggg cccttccgag cgccgatgcc gtcccgttcg gcccgctcgc ggcgcggcgg
     2761 ccgacgagcc tgcgcgtggc tgcgctcggc gcgccgaagc tgacggaagc gcaggcgagt
     2821 gcgctggccg cggcccggga gcgcgacagg gcgcgcaagg caaaaagccg ccagctctgg
     2881 gccgcgcacg ccgcgcgcct gaacgccatc gaggcgaagc tgaagccgtc gcaactgcgc
     2941 atcgcagcag gcctctgaag gcggaacggc gatcagagcg gatcgtgagt taggaacccg
     3001 ggccagcaac gtacgttgag cttgcgttgc tgagccgccg gggtgcccca tgccgaagat
     3061 cgagaccgcc cgccgcattg accccgaggc cggacggcgc agggcggccc gctgtctcgc
     3121 cgccgcgctt gccggggcct gccttgtcct tccgctggaa acctcggtcg tccaggccgg
     3181 cgacgatgcc ggcgtacacg aattccttat gcgcgagtcc ggtcgcgggc ggtcggctgc
     3241 gcccgagccg gcgcgatacc agcctgcccc gacggtcccg gcgcccgtca cccaggccgc
     3301 cgccacggtg cagcaatatt tcgatgcgcc cgtccagcgc gcgccggcac gcgccaaggt
     3361 agcgcctccg gtccgggccg agttcaccaa cctgcagcgc acggtcgatc tggccaagcc
     3421 cacccagtca gacacgcagc gcggtcttgg gggc
//
LOCUS       DASQWN010000302         2951 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1243475, whole genome shotgun sequence.
ACCESSION   DASQWN010000302 DASQWN010000000
VERSION     DASQWN010000302.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2951)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2951)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2951
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1243475"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            161..1072
                     /locus_tag="VE686_05855"
     CDS             161..1072
                     /locus_tag="VE686_05855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019404716.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HYY84009.1"
                     /translation="MPADPEVLPIVDAHQHFWDLERNYYPWLCDPELIPFRYGDYSAL
                     RRTYLPEDYRRDTRAWRIVKTVHVEAEWDRRDPVAETRWLERVSAEHGLPTACVAYCA
                     LDGGDADAVLAAQAASPLVRGIRHKPQAAGSPRNAARGQPGSMDDPAWRRGYALLARH
                     GLSFDLQTPWWHLDAAAELARDFPQTQIVINHTALPSDRSPEGLAAWRKALGVVAAAP
                     NVAIKISGLGDPPRAWTVEANAPVIRDAIAIFGADRAMFASNYPVDSLVATYDEIAAG
                     FISAIGHLPVEDRRKLLHDNAQRIYRL"
     gene            1191..2189
                     /locus_tag="VE686_05860"
     CDS             1191..2189
                     /locus_tag="VE686_05860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017268874.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TRAP transporter substrate-binding protein"
                     /protein_id="HYY84010.1"
                     /translation="MQRRRMLIAGLAVAVGVAVLAPRAEAQTRLRYAHVGSEGDIQYW
                     FAEEAAKKIPQATENRVAVQVFPNSQLGGVQEMIDGVKSGAISIGHHEFASLARLVKD
                     IAVFNAPFVYRDGAHALAATDPRKSEVLQEFNQKLVAEGGMRIVGRLFRGARQMTAKQ
                     AVYSPADLQGKRFRGVPIQLWTTMIRGFGAIPTPVEVAELPTALMTGMVIGQENPLTM
                     INANKLYEVQTHVMLTGHMQNVLPVFVNERAWQAISEKDRTAILDALDGIAQDTLRQA
                     DKAEQDLVEELKKKGMTFVTEKDGLKVGEFREKVSAEIAKDFPTWKPYMDRIAAMK"
     gene            2239..2874
                     /locus_tag="VE686_05865"
     CDS             2239..2874
                     /locus_tag="VE686_05865"
                     /inference="COORDINATES: protein motif:HMM:NF016200.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TRAP transporter small permease subunit"
                     /protein_id="HYY84011.1"
                     /translation="MSEIVPSALLSRENYAPADAFAPDRALAPVRLVLRWASLVMIAV
                     MIALPALQVVLRELLDTPFVGTEELTRFMLICIVFVTLPYVIASGTNIRLEEGLHLMP
                     PGMRRAFEVLIAATGAAAFAVAAAAIAVATLRNLQNATPTLGIPYYVFFSTAFLGLAF
                     AAVESALQLWKVLTRRPPYVTFADEASPDDMDALEAALVAEADRGAGDRAR"
BASE COUNT          463 a         1044 c          989 g          455 t
ORIGIN      
        1 caaggacatg aaggccgtga aggagttcgc gcacggcctc gacctgacgc tgccggtcgt
       61 cgagtcggcg gcggagcgct acgcgcgata cgtcgagcaa ggcaacgaga tggccgactc
      121 cgcctcggta gtcaggctct acgaccggga gcgttgacgc gtgccggccg accctgaggt
      181 tctgcccatc gtcgacgccc accagcactt ctgggacctc gagcgcaact actatccctg
      241 gctctgcgac cccgagctca tcccgttccg ctacggcgac tactcggccc tgcggcgcac
      301 gtatctgccc gaggactacc ggcgcgacac ccgcgcgtgg cgcatcgtca agacggtcca
      361 cgtcgaggcg gaatgggacc ggcgcgatcc cgtcgccgag acgcgctggc tcgagagagt
      421 gagcgcggaa cacggcctgc cgaccgcctg cgtcgcctac tgcgcccttg acggcggcga
      481 cgccgatgcc gtgctcgccg cccaggcggc gtcgccgctg gtgcggggca tccggcacaa
      541 gccacaggcg gcgggctcgc cgcggaacgc agcccgcgga cagcccggct ccatggacga
      601 ccccgcgtgg cggcgtggct acgcgctcct cgcgcggcac ggcctgtcct tcgacctgca
      661 gactccgtgg tggcacctcg atgccgccgc cgagctcgcg cgcgacttcc cgcagacgca
      721 gatcgtcatc aaccacacgg cccttccgag cgaccgcagc ccggagggcc ttgcggcatg
      781 gcgaaaggcg ctcggggtgg tggcggccgc gcccaacgtc gccatcaaga tctcagggct
      841 cggcgacccg cctcgagcat ggaccgtgga ggcgaacgcg ccggtgatcc gcgacgccat
      901 cgccatcttt ggcgccgacc gggcgatgtt cgccagcaac taccccgtcg actcgctggt
      961 cgcgacctac gacgagatcg cggccggctt catctcggcg atcggccacc ttcccgtcga
     1021 ggatcgccgc aagctcctgc acgacaacgc ccagcgcatc taccgcctgt gagccgggcg
     1081 cgccgacgta cggccggcca ttgcgcaatg ctgcggtcct cgccattgat aggcgcgaag
     1141 cgctagccgc acgccggcga cgcctagaca atcactcggg aggaaagcac atgcaacgcc
     1201 gtcggatgct gattgccggt ctcgcagtcg cggtaggcgt cgcggttctc gcgccacgcg
     1261 ccgaggcaca gacccgcctc cgctacgcgc acgtcggctc cgagggtgac atccagtact
     1321 ggttcgccga ggaagctgcg aagaagattc cgcaagcgac cgagaaccgc gtcgccgtcc
     1381 aggtgtttcc gaattcgcag ctcggcggcg tccaggagat gatcgacggg gtcaagtccg
     1441 gcgccatctc gatcggccac catgagttcg cctcgctcgc gcgcctggtg aaggacatcg
     1501 cggtcttcaa tgctccgttc gtgtaccgcg acggcgcgca tgcgctggcg gcgacggacc
     1561 cgcgcaagtc cgaggttctg caggagttca accagaagct cgtcgcggaa ggcggcatgc
     1621 gcatcgtggg tcgcctgttc cggggcgcgc gccagatgac ggcgaagcag gcggtctatt
     1681 cgcccgccga cctgcagggc aagcgcttcc gcggcgtgcc gatccagctc tggaccacca
     1741 tgatccgggg cttcggcgcg atcccgactc ccgtcgaggt cgccgagctg cccacggcgc
     1801 tgatgaccgg catggtgatc gggcaggaga acccgctcac catgatcaat gccaacaagc
     1861 tctacgaggt gcagacgcac gtcatgctca cggggcacat gcagaacgtg ctgccggtgt
     1921 tcgtgaacga gcgcgcctgg caggcgatct ccgagaagga ccgcaccgcg atcctcgacg
     1981 ccctcgacgg catcgcgcag gacaccctgc ggcaggccga caaggcggag caggacctcg
     2041 tcgaggagct gaagaagaag ggcatgacct tcgtcaccga gaaggacggg ctgaaggtgg
     2101 gcgagttccg cgagaaggtc tcggcggaga tcgccaagga ttttccgacg tggaagccgt
     2161 acatggaccg catcgcggcc atgaagtagc gcacctacgg cggccgcgcg cgaacgcccg
     2221 ctctcgcctg acggcatcat gtccgaaatc gtcccgagcg cactcctgtc gcgcgagaac
     2281 tacgccccgg cggacgcgtt cgcgcccgac cgggcgctcg cgcccgtgcg gctcgtcctg
     2341 cgctgggcga gcctcgtcat gatcgccgtc atgatcgcgc tgccggcgct tcaggtggtg
     2401 ctgcgcgagc ttctcgacac gcccttcgtc ggcactgagg agctgacgcg cttcatgctg
     2461 atctgcatcg tcttcgtgac gctgccgtac gtgatcgcgt cggggacgaa catccgcctc
     2521 gaggaggggc tgcacctcat gccgcccggc atgcggcggg ctttcgaggt gctcatcgcc
     2581 gcgacgggtg ccgccgcctt cgcggtcgcg gccgcggcca tcgcggtggc gacgctgcgc
     2641 aatctccaga acgcaacgcc gacgctcggc attccctact acgtcttctt ctcgacggcc
     2701 tttctcggcc ttgcctttgc ggccgtcgag agcgcgctgc agctgtggaa ggtgctgacg
     2761 cggcgcccgc cctacgtcac ctttgccgac gaggcttcgc ccgacgacat ggacgcgctc
     2821 gaggccgctc tcgtcgccga ggcggatcgc ggcgccgggg acagggcgcg atgacgctct
     2881 tcctcctcgg cgcgttcacg gtgttcttcc tgctcggctg gccggtggtg ctggcggtga
     2941 tgatcccggc c
//
LOCUS       DASQWN010000303         2595 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_422398, whole genome shotgun sequence.
ACCESSION   DASQWN010000303 DASQWN010000000
VERSION     DASQWN010000303.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2595)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2595)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2595
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_422398"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..391)
                     /locus_tag="VE686_05870"
     CDS             complement(<1..391)
                     /locus_tag="VE686_05870"
                     /EC_number="2.3.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF013884.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016747 - acyltransferase activity,
                     transferring groups other than amino-acyl groups [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyltransferase"
                     /protein_id="HYY84012.1"
                     /translation="MIQSIQALRAIAALAVVAMHIPEDLAVRGYGHLPPFVRGAFGVD
                     LFFVISGFIMVYASRHLFARKGAGLEFILRRAARIVPTYWAVTSVLVYIARQQIGVNP
                     DYSWQHIVASYLFLPYPNPRDGSSLPLL"
     gene            complement(706..1869)
                     /locus_tag="VE686_05875"
     CDS             complement(706..1869)
                     /locus_tag="VE686_05875"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009756333.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase family protein"
                     /protein_id="HYY84013.1"
                     /translation="MAETRAPDHPEIREAVARLCAGFPGEYWRALDRDMRYPTEFVQA
                     LTEAGYLAVLIPEEYGGSGLGLSAAVAIMEEIQRAGCNGAACHAQMYVMGTVLRHGSE
                     DQKRRYLPKVATGELRLQAFGVTEPTSGTDTTSLRTTARREGDAYIVRGQKIWTSRAE
                     HSDLMLLLARTTPLDQVAKKTDGLSVFLVDMQAALGHGLTIRPIRTMMNHATTEIFMD
                     DLRVPAENLVGDEGRGFRYILSGMNAERILIAGECIGDAKWFIDKAASYAKERAVFGR
                     PIGQNQGIQFPIARAYANMRAAELMVDEALQLYEAGYNPGAEANMAKMLAADASNEAA
                     NVCIQTHGGFGFAEEYDIERKFRETRLYQVAPISTNLILAYLAEHVLGMPRSY"
     gene            2010..2366
                     /locus_tag="VE686_05880"
     CDS             2010..2366
                     /locus_tag="VE686_05880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012456378.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HYY84014.1"
                     /translation="MKVLVVEDDELVREVAVEGLMEAGFEVVEAASAEEALARCEEHV
                     ADVLFTDIRLPGSLDGWDVAEQCRETNPGLPVIYATGFSHVRPRPVPGSVWFQKPYRT
                     EQVVNAIRDLSAGAPR"
     gene            complement(2363..>2595)
                     /locus_tag="VE686_05885"
     CDS             complement(2363..>2595)
                     /locus_tag="VE686_05885"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY84015.1"
                     /translation="ALVDHRSRPWLEGAMEEASDYREHAAECRAIADTVDGPHREQLL
                     RMAQTWDRLAEEHSAPASQPPLVADPDDAKGG"
BASE COUNT          414 a          878 c          893 g          410 t
ORIGIN      
        1 gcaggagcgg caggctgctt ccgtcgcgag ggttcggata gggaaggaac agatacgagg
       61 cgacgatgtg ctgccaggaa taatcggggt tcaccccgat ctgctgacga gcgatgtaga
      121 cgaggacgct cgtgacggcc cagtacgtcg ggacgatccg cgcggcccga cgcaggatga
      181 actcgagccc ggcccctttg cgggcaaaca gatgccggga cgcatagacc atgatgaagc
      241 cggagatgac gaagaacaga tcgacgccga acgcacctct gacgaagggc ggcaggtgcc
      301 cgtagccgcg caccgcgagg tcttcgggga tgtgcatcgc caccactgcg agggcggcga
      361 tggcgcgcag ggcctgaatg gactggatca ccttcgtccg ctcgctcccg agaggctgcc
      421 gcgccagacc cgtcgccacc ccatcgattg ctcgccgaat ccgcaacgga ggacggcgtg
      481 ttcgcgccgc gcaaccggac gcgacgtcgc ctcacgcatg tccgatcttc gcccgcagcg
      541 cagcgccttg ctcatcgacg aacccgtacg cgggcgaagt cgcgctcggg tcgctcgatc
      601 ttgatcacca gcgaggcggg acgacgcgga gggcgccgcg gccgcctgct cgatcgagac
      661 gacgaggagc ccttggaggt caccttccgc ctcatcgcgc ggcgctcagt aggagcgggg
      721 catgccgagc acgtgctcgg cgaggtaggc gaggatcagg ttcgtcgaga tcggcgccac
      781 ctggtagagg cgcgtctcgc ggaacttgcg ctcgatgtcg tattcctcgg cgaagccgaa
      841 gccgccgtgc gtctggatgc agacgttcgc ggcctcattc gaggcatcgg ccgcaagcat
      901 cttcgccatg ttggcctccg cgcccggatt gtatccggcc tcgtagagct gcagcgcctc
      961 gtccaccatg agctcggccg cgcgcatgtt ggcgtaggcc cgtgcgatgg ggaactggat
     1021 gccctgattc tgtcctatcg ggcggccgaa gacggcgcgc tccttggcgt agctcgccgc
     1081 cttgtcgatg aaccacttgg cgtccccgat gcactccccg gcgatcagga tgcgctcggc
     1141 attcatgccc gacaggatat agcggaagcc tctgccttcg tcgccgacga ggttctcggc
     1201 cggaacgcgc aggtcgtcca tgaagatctc ggtggtggcg tggttcatca tggtgcggat
     1261 cggccggatg gtgaggccgt ggccgagcgc cgcctgcata tcgacgagga acaccgagag
     1321 cccgtccgtc ttctttgcga cctgatcgag cggcgtggtg cgggccagaa gcagcatcag
     1381 gtccgagtgc tcggcgcgag aggtccagat cttctgaccg cgcacgatgt aggcatcgcc
     1441 ctcccgccgt gccgtggtgc ggagcgacgt cgtgtcggtg ccggacgtcg gctcggtgac
     1501 accgaaggcc tgcagacgca gctcgccggt cgcgaccttc gggagatagc gccgcttctg
     1561 gtcctccgaa ccatgccgga gcaccgtccc catgacgtac atctgcgcat ggcaggcggc
     1621 gccattgcag ccggcgcgct ggatctcttc catgatcgcc acggccgccg agaggccgag
     1681 gccggagccg ccgtactcct cggggatcag caccgcgagg tagccggcct cggtcagcgc
     1741 ctgcacgaac tcggtcggat agcgcatgtc gcggtcgagc gcgcgccagt actcgccggg
     1801 gaagcctgcg cacaggcgcg ccacggcttc gcggatctcg gggtggtcgg gcgctctcgt
     1861 ctcggccatg cgcggcgttc ctcgtcaaca ggcacggcgc ggccgatacc gcacatcggc
     1921 ccgcctggga aaccctgccc aggaactcgc gttgacggcg gcgaggctcg cccgctaaat
     1981 gccgccccgc gtgagtccgg gagggggcga tgaaggtctt ggtcgtcgag gacgacgagc
     2041 tcgtacgcga ggtggccgtc gaaggcctca tggaggcggg gttcgaggtc gtcgaagccg
     2101 ccagcgccga agaggccctg gcgcgctgcg aggagcatgt cgccgacgtt ctcttcaccg
     2161 acatccggct ccccggcagc ctggacggct gggacgtcgc cgagcaatgc cgcgagacca
     2221 acccgggcct gccggtcatc tacgcgacgg ggttctcgca cgtgcgcccg cgccccgtgc
     2281 cgggcagcgt gtggttccag aagccctacc gtaccgagca ggtcgtcaac gccatccgcg
     2341 acctgagcgc gggagcgccc cgctagccac ccttggcgtc gtccgggtcg gctacaaggg
     2401 gcggctggct cgccggagcg gaatgctcct ccgcaagcct gtcccatgtc tgcgccatcc
     2461 tcaggagctg ctcccgatgc ggcccgtcca cagtgtcggc gatcgctcgg cactccgctg
     2521 cgtgctcacg gtagtccgaa gcctcttcca tcgcaccctc gagccacggt cgcgaccgat
     2581 gatcgaccag cgcca
//
LOCUS       DASQWN010000304         2033 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_125232, whole genome shotgun sequence.
ACCESSION   DASQWN010000304 DASQWN010000000
VERSION     DASQWN010000304.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2033)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2033)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2033
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_125232"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..412
                     /locus_tag="VE686_05890"
     CDS             <1..412
                     /locus_tag="VE686_05890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009493913.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HYY84016.1"
                     /translation="TDLDQSLDFYCNKLGLQEVRRVENEKGRYTLVFLAAPGDVERAR
                     DTKAPLVELTFNWDPETYTGGRNFGHLAYRVDDIYATCRKLMDAGVTINRPPRDGNMA
                     FVRSPDGISIELLQRGEAKQPQEPWASMPNTGVW"
     gene            426..1337
                     /locus_tag="VE686_05895"
     CDS             426..1337
                     /locus_tag="VE686_05895"
                     /inference="COORDINATES: protein motif:HMM:NF012515.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PfkB family carbohydrate kinase"
                     /protein_id="HYY84017.1"
                     /translation="MATVLCVGIAALDQVFRVDAMPSRPEKYRSDALHVTGGGTAANA
                     AVAAARLGAMVRFYGVLGDDRTGDEIVAGLVAEHVDCGGIRRVAGRRSPLSAILVDRL
                     GERLIVSYADPELPWSTDHLPDALPAGLDGVLGDTRWQAGSAHFFRLARAAGIPAVLD
                     ADRAPKDIPEVMELATHVAFSHQGARDLTGEEDPSSALRMIGSRSSTWVAVTHGAKGV
                     LHWRGREVAREPAFPVRAVDTLGAGDTWHGAFIVALAEGASEEDAVRFASAAAALKCT
                     RFGGRDGAPRRDEVHQLLTRRSGQDEA"
     gene            1374..1673
                     /locus_tag="VE686_05900"
     CDS             1374..1673
                     /locus_tag="VE686_05900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009490540.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY84018.1"
                     /translation="MLRSVLSFAALFAATAALAQPRPSTLAMPCSAVRALVASQGAVV
                     LGTGPHTYDRYVAHQGFCGLDQVTDPAYERSADTPQCFVGYRCVSRFRDTPETVR"
     gene            complement(1698..>2033)
                     /locus_tag="VE686_05905"
     CDS             complement(1698..>2033)
                     /locus_tag="VE686_05905"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY84019.1"
                     /translation="RPRRHAMSDVPYADWTETLQLVNRFADQLRAAEERIAELERACE
                     ELSERAQREIADMTERLENAEIHARDAGERRRDAEEWLRRIHDTIHKRFGAEMMVSIA
                     RDANRRQTP"
BASE COUNT          279 a          700 c          709 g          345 t
ORIGIN      
        1 gacggacctc gaccagtcgc tcgacttcta ttgcaacaag cttggcctgc aggaggttcg
       61 acgggtcgag aacgagaaag gccgctacac cctggtgttc cttgcggccc cgggcgacgt
      121 ggagcgcgcg cgcgacacca aagctcccct cgtcgagctt accttcaact gggatcccga
      181 gacctacacg ggcgggcgca atttcggcca tctcgcgtac cgcgtcgacg acatctatgc
      241 gacctgccgc aagctcatgg atgccggcgt gacgatcaac cggccgcccc gggacggcaa
      301 catggccttc gtgcgctcgc ccgacgggat ctccatcgag ctgcttcagc gcggcgaggc
      361 gaagcagccg caggagccct gggcctcgat gccgaacacg ggcgtttggt aggcggccgc
      421 cacgcatggc cacagtgctt tgcgtcggca tcgcggccct cgatcaggtt ttccgcgtcg
      481 acgcgatgcc gagccgacct gagaagtacc ggtccgatgc gctgcacgtg accggcggcg
      541 gcacggcggc gaatgctgcc gtggccgcag cccggctcgg ggcgatggtg cgcttctacg
      601 gcgtgctcgg ggacgaccgc accggggacg agatcgtggc cggccttgtg gccgaacacg
      661 tggactgcgg cggcatcagg cgtgtcgcag gccggcgctc gcccctgtcg gcgatcctag
      721 tcgaccggtt gggcgagcgg ctcatcgtct cctacgccga tcccgagctg ccctggagca
      781 ccgaccacct cccggatgcg ctgccggccg ggttggatgg cgtcctggga gacacgcgct
      841 ggcaagcggg ctcggcccat ttctttcgcc tggccagggc cgccggcatt cccgccgtcc
      901 tcgacgcgga ccgcgcccct aaagacattc ccgaggtgat ggagctcgca acgcacgtcg
      961 ctttcagcca tcagggcgcg cgcgacctca ctggggagga ggatccgtcc tcggcgctcc
     1021 ggatgatcgg cagccgatcc tcgacctggg ttgcggtgac gcatggcgcg aagggggtcc
     1081 ttcattggcg cgggcgcgag gtggcccgtg agcccgcctt cccggtgcgg gcggtcgaca
     1141 cgctcggtgc cggggacacg tggcacggcg cattcatcgt cgcgcttgcg gagggtgcgt
     1201 ccgaggagga cgccgtgcgg ttcgcctcgg cggctgccgc gctcaagtgc acgcggttcg
     1261 gcggccgtga cggcgctccg cgccgagacg aggtgcatca gttgctgacg cgccggtcgg
     1321 ggcaagacga ggcttgatga tccggtcgcc gacgtggcat caggctgcct atgatgctgc
     1381 gatccgtttt gtcttttgcc gcgctgttcg ccgccacggc ggccctggcg caaccgcgac
     1441 cttcgacctt ggcgatgccg tgcagcgccg tgcgcgcgct cgtcgcctcg cagggtgccg
     1501 tcgtgctcgg caccggccct catacgtacg accgttacgt cgcccaccaa ggtttctgcg
     1561 ggctcgacca ggtcaccgac ccggcgtacg agcgcagcgc cgacacccct cagtgtttcg
     1621 taggctatcg ctgcgtatcg cggttccgcg acacgcccga gacggtcagg tgaggagagg
     1681 cgatcctggc ggcgccttca gggggtctgg cggcggttcg catcgcgggc gatcgacacc
     1741 atcatctcgg caccgaaccg cttgtggatg gtgtcgtgga tgcggcgtag ccattcctcc
     1801 gcgtcgcgcc ggcgctcgcc ggcgtccctg gcgtggatct ccgcgttttc gagccgctcc
     1861 gtcatatcgg cgatctcgcg ctgggcacgc tcgctcagct cctcgcaggc ccgctccagc
     1921 tcagcgatac gctcctcggc ggcccgaagc tggtccgcga aacgattgac gagctggagc
     1981 gtctcagtcc agtcggcgta gggtacgtcg ctcatggcgt gccggcgcgg gcg
//
LOCUS       DASQWN010000305         2880 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_125240, whole genome shotgun sequence.
ACCESSION   DASQWN010000305 DASQWN010000000
VERSION     DASQWN010000305.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2880)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2880)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2880
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_125240"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..504)
                     /locus_tag="VE686_05910"
     CDS             complement(<1..504)
                     /locus_tag="VE686_05910"
                     /EC_number="2.1.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009338202.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HYY84020.1"
                     /translation="MGTLETYERIARLYDLLDLPFEYGRYRRIRPLLFSGLSGRVLDA
                     GVGTGRNMPFYPRGTEMVGIDLSPAMLARAERRRAALDAKVDLRRMDVTRLDFPDASF
                     DAAVATFLFCVLPEALQAPAMAEIGRVVKPGGEIRLLEYVRPTGAFRQLMARLWEPWM
                     RFAYGAGF"
     gene            633..>2880
                     /locus_tag="VE686_05915"
     CDS             633..>2880
                     /locus_tag="VE686_05915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006020205.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043546 - molybdopterin cofactor binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="xanthine dehydrogenase family protein
                     molybdopterin-binding subunit"
                     /protein_id="HYY84021.1"
                     /translation="MNTQLPPGEVAEMKFGIGQPVPRNEDPTLVRGQGRYTDDLNVEG
                     QAYAVMVRSPQAHGIIRGIDTDAARAMPGVLGVYTGADLATAGYGAFGLAFPYTNRDG
                     TKMHHPARYALSTDKVRFVGDPVAFVVAETMPQARDAAEAVVLDIEELPAVPTPEAAD
                     APGAALVYDDVPGNLGLDFHFGDKDKTAAAFAQAAHVARLELTSNRVVVSAMEPRSAI
                     GSYDGESGRFTLNVGSQGVFGLRGALAKDILKVPVDKLRIVTGNVGGSFGMKASPYPE
                     YICLLHAARALGRPVKWTDLRSESFVSDQHGRATRFKAELALDGEGRFLALRMTGYGD
                     LGSYLNQVGPLPQTTNVAKNAVGVYRTPLIEASVRCMYTNTSSVGPYRGAGRPEGNYI
                     MERLIELAAAEMGVDPIELRRKNHIRPDQIPYETPVGTSYDSGDFTAILDDALDAADW
                     AGFEARKAESRARGKLRGRGIGQYLEVTAPPMNEMGGLRFKADGTVTIITGTLDYGQG
                     HWTPFAQVLSSKLGVPFEAIRLLQGDSDELIAGGGTGGSKSIMASGAAILEASDKVID
                     QGRQIAAHVLEAGVGDIEFKAGRFTIAGTDRSIGVMELASRLRNGLVLPPELPQSLDV
                     KHVFKAAPSAYPNGCHVAEVEVDPDTGVVELVRYAMVNDFGTIVNPLLVEGQLHGGVV
                     QGLGQAIMEAVVYDESGQPLTGSYMDYQLPRAEDAPMFQFASHPVPATTNPLGAKGCG
                     EAGCAGSLP"
BASE COUNT          481 a         1027 c         1000 g          372 t
ORIGIN      
        1 gaacccggcg ccgtaggcaa agcgcatcca aggctcccac aagcgggcca tcagctgccg
       61 gaaagcgccg gtcggacgca cgtactcgag cagccggatc tcgcccccgg gcttcaccac
      121 gcgcccgatc tccgccattg cgggcgcctg cagcgcctcg ggcagcacgc agaacaggaa
      181 cgtcgccacc gcggcatcga aggaagcgtc ggggaaatcg agccgggtga cgtccatgcg
      241 gcgcaggtcc accttcgcgt cgagcgcagc ccggcggcgc tccgcccgcg cgagcatggc
      301 ggggctcaag tcgatgccga ccatctcggt gccacgcggg tagaacggca tgttgcgccc
      361 ggtgccgacg ccggcgtcga ggacgcggcc cgaaagtccg gagaagagga gcggccggat
      421 gcggcggtaa cggccgtact cgaacggcag atcgagcaga tcatagagcc gcgcgatgcg
      481 ctcgtacgtc tcgagggtcc ccatcaggct ctcgggcgtt atcgggtaac aggcgcggcc
      541 cgccccgccg caggcgagct ctgcacgcaa agctgtttca cccttccccg gaattggcta
      601 ggggaggcgg gcagcagaac cacggatggt ccatgaacac gcagcttccg ccgggcgaag
      661 tggccgagat gaagttcggc atcggccagc cggtaccccg gaacgaggat ccgacgctgg
      721 tgcgcggcca aggccgctat accgacgacc tgaacgtcga gggccaggcc tacgccgtga
      781 tggtgcgcag cccgcaggcg cacgggatca tccgaggcat cgacacggat gcggcccgcg
      841 ccatgccggg ggtcctcggg gtctacaccg gcgccgacct cgcgacggcg ggctacggcg
      901 ccttcgggct cgccttcccg tacaccaacc gcgacgggac caagatgcac caccccgccc
      961 ggtatgcgct gtcgaccgac aaggtgcgct tcgtcggcga cccggtggcg ttcgtggtgg
     1021 ccgagaccat gccgcaggcc cgcgacgcgg ccgaggcggt ggtgctcgac atcgaggaac
     1081 tgccggccgt gccgacgccc gaggcggcgg acgcgcccgg cgccgccctc gtctacgacg
     1141 acgtccccgg caacctcggc ctcgacttcc acttcggcga caaggacaag acggcggccg
     1201 ccttcgcgca ggcggcgcac gtggcgcggc tcgagctcac cagcaaccgc gtcgtcgtga
     1261 gcgccatgga gccgcgctcc gccatcggca gctatgacgg cgagagcggg cgcttcacgc
     1321 tgaacgtcgg cagccagggc gtattcggcc tgcgcggggc gctcgccaag gacatcctca
     1381 aggtcccggt cgacaagctg cgcatcgtca ccggcaacgt cggcgggtcg ttcggcatga
     1441 aggcctcgcc gtatcccgag tacatctgcc tgttgcacgc ggcgcgcgcg ctcgggcgcc
     1501 cggtgaagtg gaccgacctc cgctccgaga gcttcgtctc cgaccagcac ggccgggcga
     1561 cgaggttcaa ggcggagctc gccctagacg gggagggccg ctttctggcg ctgcgcatga
     1621 ccgggtacgg cgacctcggt tcctatctca accaggtcgg gccgctgccg cagaccacca
     1681 acgtcgccaa gaacgccgtg ggcgtctacc gcaccccgct gatcgaggcg tcggtgcggt
     1741 gcatgtacac caacacgtcc tcggtcggac cataccgcgg cgccgggcgg cccgagggca
     1801 actacatcat ggagcggctc atcgagctcg ccgccgccga gatgggcgtc gacccgatcg
     1861 agctcaggcg caagaaccac atccgtcccg atcagatccc ctacgagacg ccggtcggca
     1921 cgagctacga ctcgggcgac ttcaccgcca tcctcgacga cgccctcgac gccgccgact
     1981 gggccggctt cgaggcgcgc aaggctgaga gccgcgcacg cggaaagctc cggggcaggg
     2041 gcatcggtca gtacctcgag gtcacggcgc cgcccatgaa cgagatgggc ggcttgcgct
     2101 tcaaggccga cggcaccgtc accatcatca ccggcaccct cgactacggg caagggcact
     2161 ggacgccctt cgcgcaggtg ctgagctcga agctcggcgt gcccttcgaa gccatccggc
     2221 tcctccaggg cgacagcgac gagctcatcg ccggcggcgg cacgggcggc tctaagtcaa
     2281 tcatggcgag cggcgcggcc atcctcgagg cgagcgacaa ggtcatcgac cagggccgcc
     2341 agatcgccgc gcacgtgctc gaggccgggg tcggcgacat cgagttcaag gccgggcgct
     2401 tcaccatcgc cgggacggac cgcagcatcg gtgtgatgga gctggcaagc cgcctgcgca
     2461 acggcctcgt gctgccgccc gagctgccgc agagcctcga cgtgaagcac gtcttcaagg
     2521 cggcgccctc ggcctatccg aacggctgcc acgtggccga ggtcgaggtc gatccggaca
     2581 ccggcgtcgt cgagctcgtg cgctacgcga tggtcaacga cttcggcacc atcgtgaacc
     2641 cgctgctcgt ggaagggcag ctgcacgggg gggtcgtgca ggggctcggc caggccatca
     2701 tggaggccgt cgtctacgac gagagcgggc agccgctcac cggctcgtac atggactacc
     2761 agctgccccg ggcggaggac gcgcccatgt tccagttcgc gagccacccg gtgccggcga
     2821 ccacgaaccc cctcggcgcc aagggctgcg gcgaggcggg gtgcgccggc tcgctgccgg
//
LOCUS       DASQWN010000306         3250 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1045752, whole genome shotgun sequence.
ACCESSION   DASQWN010000306 DASQWN010000000
VERSION     DASQWN010000306.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 3250)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3250)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3250
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1045752"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1621)
                     /locus_tag="VE686_05920"
     CDS             complement(<1..1621)
                     /locus_tag="VE686_05920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012336077.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HYY84022.1"
                     /translation="MAGVTQHPAEALRPDPDGSGARVVGLDLIPAKILVVDDDQRNLF
                     AVEEMLRAPGIEIVLADSGEAALRRVLQDDFAVVLLDVQMPRIDGFEVASLIRTRPRS
                     SRVPIIFLTAFNKDDLHIFRGYTAGAVDYVFKPIEPLILRSKVDVFVDLYRKTEEIRR
                     QGEEERRLLVENLRVRGEKLKAEQALRRREEHQSLVLRSLPIALYTAALEEHHRQLRF
                     TNDSIREITGFAPPDFLGAPEFWADRLHPDDRERVLAALQAIDETGSVALEYRWRCAD
                     GSERHILDQAVLMREDDGRPREFFGMWLDISDRKQMEQNLLHASKLEAVGRLTGGIAH
                     DFNNMLSVVIGNLDLLQNAIEGNEKASRRARLAMEGAQRCADLTNRLLSFSRRQPLQT
                     SVINLRDLVPGMLELLQRTLGERIEVHLDAGDDLWPVDVDPTQFEAALVNLAVNARDA
                     MPDGGDLTVAMRNASLDDAGSGTAADVVVVSVRDTGTGMPDAVREKVFEPFFTTKESG
                     KGTGLGLSMVYGFAQQSGGRIEIDSAPGEGTT"
     gene            complement(1609..>3250)
                     /locus_tag="VE686_05925"
     CDS             complement(1609..>3250)
                     /locus_tag="VE686_05925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012336076.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HYY84023.1"
                     /translation="ISSAEGSPLRAGSDWIAFEVADTGIGIAEDKQRIVFEAFQQADG
                     TTSRKFGGTGLGLTISREIARLLGGEIVLSSQPGRGSTFTLFLPMEPLVMGTQPGAAS
                     AISDGNSGMAISKPSAPMALSASADDRHAIIQGDHVVLIIEDDAMFASVLLELARAQG
                     FKGLIASDGAAALALAHRYKPHAITLDIGLPDMDGWALLDLLKHDPRTRHVPIHVISI
                     DDQKRRGLRAGAFGFLEKPVDRDALLEAFSRTRDFVDRPVKNLLLVEDDEIQRMSISE
                     LLGRDEVQVVGVGTAEGALEALQARRFDCAVVDLGLPDLPGAELIEKIRAARGGSELP
                     IIVYTGQDLSKEQERQLERIASTIIVKDTESSGKLLDETALFLHRAIAGVPADKQIVV
                     DRKDDAPLEGRKVLVVDDDMRNIFSLTSALEQHGMEVVFAENGREAIDKLKATPGIAA
                     MLVDIMMPEMDGYETMREIRRMSQFAHLPMVAVTAKAMVGDREKCLEAGASDYVSKPV
                     DIDQLLAVLRVQLGRSTYVTLGADSRPGNGAAGSAWQA"
BASE COUNT          480 a         1104 c         1134 g          532 t
ORIGIN      
        1 cggtcgtgcc ctcgcccggc gcgctgtcga tctcgatgcg cccgcccgac tgctgcgcaa
       61 agccgtagac catgctcaag ccgaggccgg tccccttgcc gctctccttc gtggtgaaga
      121 agggctcgaa gaccttctcc cgcactgcgt ccggcatgcc ggtcccggtg tcccggaccg
      181 acacgacgac gacgtccgcg gccgtcccgg aacccgcgtc gtcaaggctc gcgttgcgca
      241 tcgccaccgt gagatcgccc ccgtcgggca tggcatcgcg cgcgttgacg gcgaggttga
      301 cgagggccgc ctcgaattgc gtcgggtcga cgtcgacggg ccagagatcg tcgccggcgt
      361 cgagatggac ctcgatgcgc tctccaagcg tgcgctgcaa aagctcgagc atgcccggca
      421 cgaggtcgcg caggttgatg acgctcgttt gaagcggctg gcgtcgtgag aagctgagca
      481 ggcggttggt gaggtcggcg cagcgctgcg cgccttccat ggcgaggcga gcgcgccggc
      541 tcgccttctc gttcccctcg atggcgttct gcaacaggtc gaggttgccg atgaccacgc
      601 tcagcatgtt gttgaagtcg tgcgcgatcc cgcccgtgag gcggcccacc gcctcgagct
      661 tgctcgcatg caggagattc tgctccatct gcttgcggtc gctgatgtcg agccacatgc
      721 cgaagaactc gcgcgggcgg ccgtcgtcct cgcgcatgag caccgcctgg tcgaggatgt
      781 ggcgctcgct gccgtcggcg cagcgccagc ggtactcgag ggcgacggag ccggtttcgt
      841 cgatggcctg caacgccgcg agcacgcgct cgcgatcgtc gggatggagg cggtcggccc
      901 agaactccgg cgcgcccaag aaatccgggg gcgcgaagcc ggtgatctcg cggatgctgt
      961 cgttggtgaa gcgcagctgc ctgtgatgct cctcgagggc ggccgtgtag agcgcgatcg
     1021 gcagcgagcg cagcaccagc gactggtgct cctcgcggcg tcgcagggcc tgctcggcct
     1081 tcagcttctc gccgcgcacg cgcaggttct cgacgaggag ccggcgctcc tcctcgccct
     1141 ggcgccggat ctcctcggtc ttgcggtaga ggtcgacgaa gacgtcaacc ttcgagcgca
     1201 agatgagcgg ctcgatgggc ttgaagacgt agtccacggc cccggccgtg tagccgcgga
     1261 agatgtgcag gtcgtccttg ttgaaggctg tgagaaagat gataggcacg cgcgacgagc
     1321 gcggccgcgt ccggatcagc gaggcgacct cgaagccgtc gatgcgcggc atctgcacgt
     1381 cgagcaggac gaccgcgaag tcgtcctgga gcacgcgccg cagggccgcc tcgcccgagt
     1441 cggcgaggac gatctcgatc cccggcgccc gcagcatctc ctccacggcg aacagattgc
     1501 gctggtcgtc gtcgacgacg aggatcttcg ccgggatgag gtcgaggccg acgacgcgtg
     1561 cgcccgaccc gtcggggtcg ggcctcaatg cctcggccgg atgctgcgtc acgcctgcca
     1621 tgcgctcccg gcggctccat tgccggggcg gctgtccgcc ccaagagtga cgtaagtgct
     1681 gcgcccgagc tgcacgcgca agaccgcgag gagctggtcg atgtccacgg gcttcgaaac
     1741 gtagtcggac gcgccggcct cgaggcactt ctcgcggtcc ccgaccatcg ccttcgcggt
     1801 gacggccacc atgggaagat gcgcgaactg cgacatgcgc cgaatctcgc gcatcgtctc
     1861 gtagccgtcc atctccggca tcatgatgtc gaccagcatc gcggcgatgc ccggggtcgc
     1921 cttcagcttg tcgatggctt cgcgcccgtt ctcggcgaac accacctcca tcccgtgctg
     1981 ctcgagcgcg ctcgtcagcg agaagatgtt gcgcatgtcg tcgtcgacga cgagcacctt
     2041 gcgcccctca aggggcgcgt cgtccttgcg gtcgaccacg atctgcttgt cggccggaac
     2101 gcccgcgatg gcgcggtgga ggaacagcgc cgtctcgtcg aggagcttgc ccgacgactc
     2161 ggtgtccttg acgatgatcg ttgaggcaat gcgctcgagc tgccgctcct gctccttcga
     2221 gaggtcctgg ccggtgtaga cgatgatcgg cagctccgac ccgccgcgtg cggccctgat
     2281 cttctcgatc agctcggccc cgggcaggtc cggcagcccg agatcgacga cggcgcagtc
     2341 gaagcggcgg gcctggagcg cctcgagcgc gccttcggcc gtgccgaccc cgacgacctg
     2401 gacctcgtcg cgcccgagga gctccgagat gctcatgcgc tggatctcgt cgtcctcgac
     2461 gagaaggagg ttcttgaccg ggcggtcgac gaagtcccgc gtgcgcgaga aggcctcgag
     2521 cagcgcgtcg cggtcgacgg gcttctcgag gaagccgaag gcgccggcgc gcaggccccg
     2581 gcgcttctgg tcgtcgatcg agatcacgtg gatgggcacg tgccgcgtgc gcggatcgtg
     2641 cttcaggagg tcgagcagcg cccagccgtc catgtcgggg aggccgatgt cgagcgtgat
     2701 cgcgtgcggc ttgtagcggt gcgccagcgc aagcgccgcc gcgccgtcgg acgcgatcag
     2761 ccccttgaag ccctgcgccc gcgcgagctc gagcaggact gacgcgaaca tcgcgtcgtc
     2821 ctcgatgatg agcacgacgt gatcgccttg gatgatggcg tggcggtcgt ccgccgaggc
     2881 ggacagcgcc atcggcgcgg acggcttgct gatcgccatg cccgaattgc cgtcggagat
     2941 ggccgaggct gcaccaggct gcgtccccat caccagcggc tccatgggca ggaacagggt
     3001 gaaggtcgag cctcggccgg gctggctcga cagcacgatc tcgccgccga gcaggcgcgc
     3061 gatctcgcgg ctgatcgtga ggccgagtcc cgtgccgccg aacttgcggc tcgtcgtacc
     3121 gtccgcctgc tggaaggcct cgaagacgat gcgctgcttg tcttccgcga tcccgatgcc
     3181 cgtgtcggcc acctcgaagg cgatccagtc ggagccggcg cgcaacggcg agccctcggc
     3241 cgagctgatc
//
LOCUS       DASQWN010000307         2515 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_819738, whole genome shotgun sequence.
ACCESSION   DASQWN010000307 DASQWN010000000
VERSION     DASQWN010000307.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2515)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2515)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2515
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_819738"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..183
                     /locus_tag="VE686_05930"
     CDS             <1..183
                     /locus_tag="VE686_05930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012046477.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="benzoyl-CoA oxygenase"
                     /protein_id="HYY84024.1"
                     /translation="GPAVAALLRDAATHVYICGLKGMEAGVDEAFADVCGHAGADWAA
                     LKAEMRAAGRYHVETY"
     gene            692..2500
                     /locus_tag="VE686_05935"
     CDS             692..2500
                     /locus_tag="VE686_05935"
                     /inference="COORDINATES: protein motif:HMM:NF012711.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="feruloyl-CoA synthase"
                     /protein_id="HYY84025.1"
                     /translation="MTGTIAPVRPDRGAARDSVSPGASADIFAPPLVDVEHRPDGSMV
                     LRSPTPLQEPAPSLCVLLERWAAETPDRTFLAERSGAPAGEPWRTLRYGEARTRARGV
                     AQALLDRGLEPERPILILAENGIDHAVVMLGAMLAGVPVAPVSTAYARLSRDFAKLRY
                     VIDMVRPQLVYVDDPARYGDALRAVDLGDAEVVTSRPSPDLRATPLSDLESTHATEAV
                     DRAQAAVGPDTIAKVLFTSGSTDLPKGVVNTHRMLCANQESIVQIWPFVTREPPVIVD
                     WLPWNHTFGGNHNFNLILRNGGTLYIDEGKPVPALFQHSLANLRAVAPTLYFNVPRGY
                     ASLLDHLEADAAFNRHFFSRLRVVFYAAAALSQAQWKRLEACSLAARGEIVPMISAWG
                     LTETAPMVTSGHFAVDRAGVIGLPAPGNELLLKPVGDRLEMLVRGPVLMPGYWQRSDL
                     TEQCFDDGWFKTGDAARFADPADPSKGIVFDGRVAENFKLSTGTWVNVGMLRVAVLGA
                     ALPLLDDAVITGHDRDEIGMLAFPNLAACRALCPDVAADAPLSEVVAQPAVREAVAAA
                     LARHNAQSEGSSTMVCRALLLTEPPSIDANEITDKG"
BASE COUNT          374 a          948 c          857 g          336 t
ORIGIN      
        1 gggcccgccg tggcggcgct cctgcgcgac gctgcgaccc acgtctacat ctgcggcctg
       61 aagggcatgg aggccggcgt cgacgaggcc ttcgcggacg tgtgcggcca cgccggcgcc
      121 gactgggcgg cgctcaaggc cgagatgcgc gcggccggcc gctaccacgt cgagacgtat
      181 tgatggggag gtccggccgt cgccgcgagg cggaaacgcg ccgatcagga ccaaggacaa
      241 tgcaaagcgc catgatgcgg gctgcggaac ccaccggccg gcaccgcccg aagccgctgc
      301 tccctcgaac gccctctggg gcggcgccgg gacgaagggg acgggcctgc acgcggacct
      361 cgaacggcgg cccacgtgga acgacgacaa tgcaaagcat catgacgcga gccgcggagc
      421 ccctcgggcg gcagcgcccg aagctgcggt tccacgaaac tccctctggc gcgggccgga
      481 gacggagggg gctggccgag gacacaagct ggaatgagcg tccgatgacg accgagacaa
      541 tgccaaacca catgaggtcg ctcccggcac gtgcgaagcg aggggacgcc cgcgcgtgac
      601 cgggcctcac ggttgtgctg tgatcgaccg gcggcggtga acgccggcag gaataagcga
      661 aggctcggcc aagccgggcg ggagggaacg gatgacgggc accatcgcgc ctgtgcggcc
      721 cgaccgcggc gcggcacgcg attccgtgag cccgggcgcc agcgcggaca tcttcgcgcc
      781 gccgctcgtc gatgtggagc accgccccga cggatcgatg gtcctgcgct cgcccacgcc
      841 gctgcaggag cctgcgccat cgctgtgcgt cctactggag cgctgggccg cggagacgcc
      901 ggaccggacc ttcctcgccg agcgctccgg ggcgcctgcc ggcgagccgt ggcgcaccct
      961 caggtacggc gaggcccgca cccgcgcgcg cggcgtggcg caggcgctcc tcgaccgcgg
     1021 gctcgagcct gagcgcccca tcctcatcct cgccgagaac ggcatcgacc acgcggtcgt
     1081 gatgctcggc gccatgctgg caggcgtgcc cgtcgcgccg gtctcgactg cgtacgcgcg
     1141 cctgagccgc gacttcgcca agctgcgcta cgtcatcgac atggtgcggc cgcaactcgt
     1201 ctacgtcgac gacccggccc gctacgggga tgcgctccgc gccgtcgatc tcggcgacgc
     1261 cgaggtggtc acgagccggc cctcgccgga tttgcgcgca acgccgctca gcgatctcga
     1321 gtcgacgcac gcgaccgagg cggtggatcg cgcgcaagcg gcggtcgggc ccgacacgat
     1381 cgccaaggtg ctgttcacct cgggctccac cgatctgccc aagggcgtcg tcaacacgca
     1441 ccggatgctc tgcgccaacc aggagagcat cgtccagatc tggccgttcg tcacgcgcga
     1501 gccgcccgtc atcgtcgact ggctgccctg gaatcacacc ttcggcggca accacaactt
     1561 caacctcatc ctgcgcaacg gcggcaccct ctacatcgac gagggcaagc ccgtgccggc
     1621 cctgttccag cactcgctcg cgaacctgcg ggccgtcgcc ccgacgcttt atttcaacgt
     1681 gccgcggggc tacgcgagcc tcctcgacca cctcgaggcc gacgcggcct tcaaccgcca
     1741 cttcttctcc cggctgcggg tcgtgttcta tgccgccgca gccctgtcgc aggcgcagtg
     1801 gaagcggctc gaggcctgct cgctcgcggc gcgcggcgag atcgtgccca tgatctccgc
     1861 ctgggggctc accgagacgg cgcccatggt cacgagcggg cacttcgccg tggaccgggc
     1921 cggcgtcatc ggcctgccgg cccccggcaa tgagcttctg ctcaagcccg tcggcgaccg
     1981 cctcgagatg ctggtacggg gccccgtgct gatgcccggc tactggcagc ggtcggacct
     2041 caccgagcag tgcttcgacg atggctggtt caagaccggc gacgccgccc gcttcgccga
     2101 tcccgccgac ccctcgaagg gcatcgtctt cgacgggcgc gtcgccgaga acttcaagct
     2161 ctcgaccggc acctgggtca acgtcggcat gctgcgcgtc gccgtgctcg gcgccgcctt
     2221 gcccctcctc gacgacgccg tcatcaccgg gcacgaccgc gacgagatcg gcatgctcgc
     2281 cttcccgaac ctcgccgcct gccgcgccct ctgccccgat gtcgccgccg acgcgccgct
     2341 atccgaggtc gtggcgcagc cggccgtccg cgaggccgtc gccgcggcgc tcgcgcgcca
     2401 caacgcgcag tccgagggca gctcgacgat ggtgtgccgg gcgctgctcc tgaccgagcc
     2461 gccgtccatc gacgccaacg agatcaccga caagggctag ccagcgcgcc gtcct
//
LOCUS       DASQWN010000308         2293 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_920128, whole genome shotgun sequence.
ACCESSION   DASQWN010000308 DASQWN010000000
VERSION     DASQWN010000308.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2293)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2293)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2293
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_920128"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(10..1035)
                     /locus_tag="VE686_05940"
     CDS             complement(10..1035)
                     /locus_tag="VE686_05940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009489487.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR01620 family protein"
                     /protein_id="HYY84026.1"
                     /translation="MNQRPRAFRLDRPDIARTDVGEPAPTAPIVVTDEPFDAIEAADG
                     VVVPVARRRRAPWLAILMSALGGLVTLAIGLGVERLIADLFAVTPWLGWVALGLAVLA
                     AIALAAIVGRELGGVLRERKIERLRAAAADALAVRDHQAAKSVAAEVVALYAARAEGR
                     AARERVRALGDEIIDADDRLAIVERELIAPLDAQAKRAIADAAKQVSVVTAISPRAIV
                     DVAFVVFAAVRVLRRVARIYGGRPGALGFLRLARAAFSHLAITGGVAVGDSLLQQVLG
                     LGLAARVSAKLGEGVLNGLLTARFGLAALSVCRPLPFVREAAPRIGDVAGELLSAAQP
                     GRPEGPL"
     gene            complement(1032..>2293)
                     /locus_tag="VE686_05945"
     CDS             complement(1032..>2293)
                     /locus_tag="VE686_05945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012335861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="YcjX family protein"
                     /protein_id="HYY84027.1"
                     /translation="AAAEGRIRRARLAHQPDDEVARFPYEEHAATMIEARRWPQSTTR
                     ISEMRVEVEYERAAGWRSGPATLTLDIVDYPGEWLLDLALVGASYAEWSRQTVEGSRR
                     PGRAELADSWRQKLAALDPAGPADELVAERASAAFKAYLTALRVGPEAVATTPPGRFL
                     MPGDLDGSPALTFAPLDLPRDGEITSGTLAGLMERRYEAYKRHVVRPFFRDHFQRIDR
                     QIVLVDVLAAVDGGAVALAELEEALDQVLIAFRTGRNTMLSRLFSPRADRVLFAATKA
                     DHIHHASHDRLDALLRTLVARAVKRTEAGGARVGTVALASVRATRETAVRDRGELLRA
                     VAGVPEAGEEVGGEMFDGETEAAVFPGELPQDPHAVLAGAVPPGSFRFPRFRPPAITR
                     DAAGRPAALPHIRLDRALEFLIGDRLA"
BASE COUNT          340 a          807 c          882 g          264 t
ORIGIN      
        1 caaagcagct caaagcgggc cctccggtcg gccgggctgt gcggccgaga ggagctcacc
       61 ggcaacgtct ccgatgcgcg gcgcggcctc gcggacgaag ggcagcgggc ggcacaccga
      121 cagggcggca aggccgaagc gcgctgtgag gagcccgttg agcaccccct ccccgagctt
      181 cgccgagacc ctggcggcga gcccgagccc gagcacctgc tggagcaggc tgtcgccgac
      241 cgccacgccg cccgtgatgg cgaggtggct gaaagcggca cgcgcaagcc gcaggaaccc
      301 gagcgcgcct gggcggccgc cgtagatgcg tgccacgcgg cgaagcaccc gcacggccgc
      361 gaacaccaca aaggcaacat cgacgatcgc acgcgggctg atggcggtga cgacggagac
      421 ctgcttcgcc gcgtccgcga tggcgcgctt cgcctgggcg tcgagggggg cgatgagttc
      481 gcgctcgacg atggcgaggc gatcgtcggc gtcaatgatc tcgtcgccga gcgcgcgcac
      541 ccgctcccgc gccgccctgc cttccgcccg cgccgcgtag agggcgacga cctccgccgc
      601 gacggatttg gcggcctggt ggtcgcggac ggcgagcgcg tcggcggcgg cggcacgcaa
      661 gcgctcgatc ttgcgctcgc gcaggacgcc cccgagctca cgcccgacaa tcgccgccag
      721 ggcgatcgca gcgagtaccg caagcccgag ggcgacccag ccaagccagg gcgtgacggc
      781 aaacaggtcc gcgatgaggc gctcgacccc cagcccgatc gcgagcgtca cgagcccgcc
      841 gagggccgac atcaggatgg cgagccacgg cgcacgccgg cgacgggcca ccggcacgac
      901 aacgccgtcg gccgcctcga tggcgtcgaa cggttcgtcc gtcaccacga tgggcgccgt
      961 gggcgcaggc tcgccgacgt cggtgcgggc gatgtcgggc cgatcgagcc ggaaggcgcg
     1021 ggggcgctgg ttcatgcgag gcggtccccg atcaggaatt cgagggcgcg gtcgagacgg
     1081 atgtgaggca gcgccgcggg gcggccagcc gcgtcgcggg tgatggccgg ggggcggaag
     1141 cgcgggaagc ggaacgatcc gggcggcacc gcgccggcga gcaccgcgtg cggatcctga
     1201 ggcagctcgc ccggaaacac ggccgcttcc gtctcgccgt cgaacatctc tccgccgacc
     1261 tcctcgccgg cttccggcac gccggcgacg gcgcgcagaa gctcgccccg atcgcggacg
     1321 gccgtctcgc gggtggcgcg tacggaggcg agcgcgacag tgccgacgcg ggcgccgccg
     1381 gcctcggtgc gcttcacggc acgggctacg agcgtgcgca gcagcgcgtc gaggcggtca
     1441 tggctcgcgt ggtggatatg gtcggccttc gtggccgcga acagcacccg gtcggcgcgg
     1501 ggcgagaaca gccgggacag catggtgttg cgccccgtcc ggaaggcgat gagcacttgg
     1561 tcgagagctt cctcgagctc ggcaagggcg accgcccccc catcgacggc agcgaggacg
     1621 tccacgagca cgatctgccg gtcgatacgc tggaaatgat cgcggaagaa aggccgcacc
     1681 acgtggcgct tgtaggcttc gtagcggcgc tccatcaggc ctgcgagcgt gcccgacgta
     1741 atctcgccat cgcgcggaag atccagaggc gcgaaggtca gcgccggcga gccgtcgaga
     1801 tcgccgggca tgaggaagcg gccgggcggg gtcgtcgcga ccgcctcggg cccgacgcgc
     1861 agggccgtga ggtaggcctt gaaggccgcg ctggcgcgtt cggcgacaag ctcgtcggcc
     1921 gggccagccg gatcgagggc ggcgagcttc tggcgccagg agtccgcgag ctcggcgcgt
     1981 ccgggtcggc ggctgccctc gacggtctgg cgcgaccact cggcatagct tgcccccacg
     2041 agggcgaggt caaggagcca ctcgcccggg tagtcgacga tgtcgagggt gagcgtcgcg
     2101 gggccggagc gccagccggc ggcgcgctcg tactcgactt ccacccgcat ctcgctgatg
     2161 cgcgtcgtcg actgcggcca gcggcgcgcc tcgatcatcg tcgccgcgtg ctcctcgtag
     2221 gggaagcgcg ccacctcgtc gtcgggctgg tgcgcgaggc gcgcgcggcg gatgcgcccc
     2281 tcggcggcgg cgc
//
LOCUS       DASQWN010000309         2417 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_224341, whole genome shotgun sequence.
ACCESSION   DASQWN010000309 DASQWN010000000
VERSION     DASQWN010000309.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2417)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2417)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2417
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_224341"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1069
                     /gene="dnaA"
                     /locus_tag="VE686_05950"
     CDS             <1..1069
                     /gene="dnaA"
                     /locus_tag="VE686_05950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018042628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003688 - DNA replication origin binding
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006270 - DNA replication initiation
                     [Evidence IEA];
                     GO_process: GO:0006275 - regulation of DNA replication
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="chromosomal replication initiator protein DnaA"
                     /protein_id="HYY84028.1"
                     /translation="HEERGEGGELGGAPLDPRLTFESFIVGRSNALAHAAADRVAHAQ
                     NGQAIYNPLYLHAGVGLGKTHLLHAIGHEARRSGRRVIYLTADRFMYGFVASLKAQTS
                     LAFKERLRGIDLLIIDDVQFIQGKQIQQEFGHTINALIDAGRQIVVAADRPPTDLEAL
                     DERVRSRLAGGLVVEIGALDESLRAAILTARMNALQALHPEFRVGPSVVTYVARAITA
                     NGRDLEGAANRLLAHATLTGTAVTVETAEAAIRDLVKNREPKRVKIEDIQKLVATRYN
                     VSRSDILSERRTAAVVRPRQIAMYLSKVLTLRSLPEIGRRFGGRDHTTVLHAVRKIEK
                     QITDDHTLSDEVELLKRMLQE"
     gene            1210..2328
                     /gene="dnaN"
                     /locus_tag="VE686_05955"
     CDS             1210..2328
                     /gene="dnaN"
                     /locus_tag="VE686_05955"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012330008.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009360 - DNA polymerase III complex
                     [Evidence IEA];
                     GO_function: GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit beta"
                     /protein_id="HYY84029.1"
                     /translation="MKVTVERAALLKALGHVHRVVEKRNTIPILANVLLRADGEGLRL
                     RATDLDIEVTDTIAADVPERGATTVPAHVLYDIVRKLPDGAQVSLEISVEGGQMQIRS
                     GRSRFMLQALPESDFPDLAAGDMPHRFTVPAAELKRLIDKTQFAISTEETRYYLNGIF
                     FHTIESGGAPVLRAVATDGHRLARVEIPAPKGAQDMPGIIIPRKAVAEIQKLIEDGGE
                     TVELELSSAKIRLSFGGVVLTSKLIDGTFPDYQRVIPAGNDKAMTVDLDIFAKAVDRV
                     STISSERGRAVKLAINDGRLTLSVNNPDSGSATEELEVEYESTALDIGFNARYLLDIT
                     GQLDGDTALFKLADPASPTLIQDREGAAALYVLMPMRV"
BASE COUNT          404 a          898 c          769 g          346 t
ORIGIN      
        1 gcacgaagag cgcggcgaag gcggcgagct cggcggcgct ccgctcgatc cccgtctcac
       61 cttcgagagc ttcatcgtag gccgctccaa tgcgcttgcc catgcggcgg cggatcgggt
      121 cgcccatgcg cagaacgggc aggccatcta caacccgctc taccttcatg cgggcgtcgg
      181 actcggaaag acgcacctcc tgcatgccat cggccacgag gcgcgccgca gcggccgccg
      241 cgtcatctat ctcacggccg accgcttcat gtacggcttc gtcgcctcct tgaaggcgca
      301 gacgtcgctc gccttcaagg agcgcctgcg cggcatcgac ctgctcatca tcgacgacgt
      361 gcagttcatc cagggcaagc agatccagca ggagttcggc cacaccatca acgccctcat
      421 cgacgcgggc cggcagatcg tggtcgcggc ggaccggcct ccgaccgatc tcgaggcgct
      481 cgacgagcgc gtgcgctccc gtctcgccgg cgggctcgtg gtcgagatcg gcgcactcga
      541 cgagagcctg cgcgcggcga tcctgacggc gcgcatgaac gccctccagg cgctccatcc
      601 ggagttccgg gtcggtccga gcgtcgtaac ctacgtcgcc cgggcgatca ccgcgaacgg
      661 ccgcgacctc gaaggcgccg cgaaccgcct tctcgctcac gccaccctca cgggcacggc
      721 cgtcaccgtc gagacggccg aggcggcgat ccgcgacctc gtcaagaacc gcgagccaaa
      781 gcgcgtcaag atcgaggaca tccagaagct cgtggcgacg cgctacaacg tctcgcgctc
      841 cgacatcctc tccgagcgaa ggaccgccgc ggtggtgcgg ccgcgccaga tcgccatgta
      901 cctgtcgaag gttctcaccc tgcgctcgct gcccgagatc ggccggcgtt tcggcggccg
      961 cgaccacacc acggtcctgc acgccgtgcg caagatcgag aagcagatca ccgacgatca
     1021 cacgctctcg gacgaggtcg agctcctcaa gcggatgctg caggagtagc cgcgcggccc
     1081 acggctggcg gcgcaaactt gcgttcccgg tcgggcttcg ccaatctgcc ttccccgctt
     1141 tgagcggtgt ccggccgagg cgtccgcccc ggccgccagc ggaagcgcca agccggaaca
     1201 ggtcgagtta tgaaggtcac agtcgagcga gcggcgctgt tgaaggcgct cggccacgtc
     1261 caccgcgtcg tcgagaagcg caacacgatc ccgattctcg ccaacgtgct cctgcgcgcc
     1321 gacggcgagg gcctccggct cagggcgacc gacctcgaca tcgaggtgac cgacaccatt
     1381 gcggccgacg tgcccgagcg cggcgcgacc accgtgccgg cccacgtcct ctacgacatc
     1441 gtgcgcaagc ttcccgacgg cgcccaggtc tcgctcgaga tctccgtcga gggcggccag
     1501 atgcagatcc gctccggccg ctcgcgcttc atgctgcagg cgctgcccga gagcgacttc
     1561 cccgaccttg cggccggcga catgccgcac cgcttcaccg tcccggccgc cgagctgaag
     1621 cgcctcatcg acaagacgca gttcgcgatc tccaccgagg agacgcgcta ctacctcaac
     1681 ggcatcttct tccacacgat cgagtccggc ggcgcgccgg tgctgcgagc cgtggcgacg
     1741 gacggccacc ggctcgcgcg cgtcgagatt ccggcgccca agggcgcgca ggacatgccc
     1801 ggcatcatca tcccccgcaa ggccgtggcg gagatccaga agctcatcga ggacggcggc
     1861 gagaccgtcg agctcgagct gtcgtcggcc aagatccgcc tgtcgttcgg gggcgtggtg
     1921 ctgacgtcga agctcatcga cggcaccttc ccggactacc agcgcgtgat cccggccggc
     1981 aacgacaagg ccatgaccgt cgacctcgac atcttcgcca aggcggtcga ccgcgtgtcg
     2041 accatctcgt cggagcgcgg ccgggccgtg aagctcgcca tcaacgacgg ccgcctcacg
     2101 ctgtcggtca acaatccgga ttcgggcagc gccaccgagg agctcgaggt cgaatacgag
     2161 tccaccgcgc tcgatattgg cttcaacgcc cgctacctcc tcgacatcac cggccagctc
     2221 gacggcgaca cggccctgtt caagctcgcc gacccggcct ccccgaccct catccaggac
     2281 cgcgagggcg cggcggcgct ctatgtcctg atgccgatgc gggtgtgatg gccgggccgg
     2341 ccggagaggg cgcaggacac cagaagggca gaacgatggt cctcgctctg agcccgcacc
     2401 tcccgcttgc gggaagc
//
LOCUS       DASQWN010000310         2142 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_920232, whole genome shotgun sequence.
ACCESSION   DASQWN010000310 DASQWN010000000
VERSION     DASQWN010000310.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2142)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2142)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2142
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_920232"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..276)
                     /locus_tag="VE686_05960"
     CDS             complement(<1..276)
                     /locus_tag="VE686_05960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008971700.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY84030.1"
                     /translation="MTTERNDQRTPDDLEALLPWHAVGRLGEDDARRVDEALARDPEL
                     ARRYALVAEERRETIAVNEALGAPSPRTRDRLFERIEAASPARSATQA"
     gene            complement(273..839)
                     /locus_tag="VE686_05965"
     CDS             complement(273..839)
                     /locus_tag="VE686_05965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020173303.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HYY84031.1"
                     /translation="MAASASDDEALIGRIASGDRAAMQALYARHSVRVYRFLLRLVRD
                     PTVAEDLVSDVFFDVWQQAGRFEARSSGTTWILSIARYKALSTYRARRTAALEPEWAE
                     AIEDEADTPEVTAQKLSKAEALRRCLADLSPEHREVIDLVYYHERSVDEVSEILGIPE
                     GTVKTRMFHARKRLSEILKAAGIDRGWP"
     gene            complement(884..>2142)
                     /locus_tag="VE686_05970"
     CDS             complement(884..>2142)
                     /locus_tag="VE686_05970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003600292.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="S8 family serine peptidase"
                     /protein_id="HYY84032.1"
                     /translation="AAADETRRVPDEVLFEVRESAGTGAAAEIARRHRLVPIASQRLA
                     LIGSTVHRYRISDRRRVADVVGALARDPRVASVQPNFILRLEADAARSPLADAQYAVG
                     RMRVPEAHRVATGQEVVVAVIDSGVDRSHPELARSVSDGFDAVGGRLSAHAHGTGIAG
                     VIGAGAQLTGVAPGARLLAVRAFTGEAGKPGAQGTTFHVLRAIDWAHQRAARVVNMSF
                     AGPPDPLLSRTLRAGRDKGMVFVAAVGNEGPNAKPLYPAADESVIAVTASDKADGLYA
                     SANRGAYICVTAPGVDIVTAAPGGAYGFSSGTSLAAAHVSGAIALLLQARPHLTPEEI
                     RAVLISRARDLGPPGADSEFGAGFADALAIVGSDAAPSASTPAAEAVSSASPADVTAE
                     KAPTAEVALSPAVEAVPSGEEGSSTR"
BASE COUNT          274 a          754 c          810 g          304 t
ORIGIN      
        1 ggcctgggtg gcgctacggg caggggaggc ggcctcgata cgctcgaaca ggcggtctcg
       61 ggtgcggggc gagggggcgc cgagcgcctc gttgacggcg atcgtctcgc ggcgctcctc
      121 ggcgaccagg gcgtagcggc gcgcgagctc ggggtcgcgc gcgagcgcct cgtcgacgcg
      181 gcgtgcgtcg tcctctccga gccgccccac cgcgtgccac ggcagaagcg cctcgaggtc
      241 atcgggcgtg cgctgatcgt ttctctcggt cgtcatggcc aacctcggtc gatgccggcg
      301 gctttcagga tctcggacag gcgcttgcgc gcatggaaca tgcgcgtctt cacggtgccc
      361 tccgggatcc cgagtatctc gctcacctcg tcgacgctcc tctcgtggta gtagacaaga
      421 tcgatcacct cgcggtgctc gggcgatagg tccgcgaggc atcggcgcag cgcctccgcc
      481 ttgctcagct tctgcgccgt gacctccggc gtgtcggcct cgtcctcgat ggcttccgcc
      541 cattcgggct cgagcgcggc ggtgcggcgc gcccggtagg tcgagagcgc cttgtagcgc
      601 gcgatggaca ggatccaggt ggtcccgctc gaccgcgcct cgaaccgccc cgcctgctgc
      661 cagacgtcga agaagacgtc gctgacgaga tcctccgcga ccgtcgggtc gcggacgagc
      721 cgcaggagga agcggtagac ccgcacgctg tggcgcgcgt agagcgcctg catggcggcc
      781 cggtcgcccg aagcgatgcg cccgatgagg gcctcgtcgt ccgacgcgga agccgccatg
      841 tcaggagctg ccggtggtta gtcgcggcag gcgcgcaaaa ggttcatcgc gtcgacgaac
      901 cttcctcgcc cgacgggacg gcctcgacgg cgggcgatag cgccacctct gcggtcggcg
      961 ccttctcggc tgttacgtca gcgggggatg cggacgagac cgcctcggcg gcgggcgtgc
     1021 ttgcgctcgg cgccgcgtcg gagccgacga tcgccagcgc gtcggcgaag ccggcgccga
     1081 actcgctgtc ggcgccgggc gggccgaggt cccgcgcacg gctgatgagg acggcgcgga
     1141 tctcctcagg cgtgaggtgc ggcctcgcct ggagcaggag cgcgatcgcg ccgctgacgt
     1201 gcgcggcggc gagggacgtg cccgagctga agccgtaggc gccgcccggc gccgcggtga
     1261 cgatgtcgac gccgggagcc gtcacgcaga tgtaggcgcc ccggttcgcc gacgcgtaga
     1321 gaccgtccgc cttgtcgctc gccgtcacgg cgatgacgct ctcgtcggct gcggggtaga
     1381 gcggcttggc gttcggcccc tcgttgccca ccgccgcgac gaagaccatg cccttgtcgc
     1441 gcccggcccg cagggtgcgg gacaacagcg ggtccggagg ccctgcgaag ctcatgttga
     1501 cgacgcgggc ggcgcgctgg tgcgcccagt cgatggcacg caggacgtgg aacgtcgtcc
     1561 cttgcgcgcc aggctttccg gcctcgcccg tgaaggcacg caccgcgagc agccgggcgc
     1621 ccggcgcgac gccggtgagc tgcgccccgg cgccgatgac gccggcgatt cccgtcccat
     1681 gggcatgcgc actcaggcgg ccgccgacgg cgtcgaagcc gtccgagacg gatctcgcaa
     1741 gctcaggatg gctgcggtcg acgccggagt cgatgacggc cacgaccacc tcttgtccgg
     1801 tggcgacgcg gtgcgcctcc ggcacgcgca tcctgccgac ggcgtattgc gcgtcggcaa
     1861 gagggctgcg cgccgcatcg gcctcgaggc ggaggatgaa gttcggctgc accgacgcca
     1921 cccgcgggtc gcgggcgagc gcgccgacca cgtcggcgac gcggcgccgg tcggagatgc
     1981 gatagcggtg gacggtgctg ccgatcagcg ccagccgctg cgatgcgatg ggcacgaggc
     2041 ggtggcggcg cgcgatctcg gccgcggcgc cggtgccggc gctctcgcgc acctcgaaca
     2101 ggacctcgtc tggaacccgc cgcgtctcgt cggcggcggc ga
//
LOCUS       DASQWN010000311         2955 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_648943, whole genome shotgun sequence.
ACCESSION   DASQWN010000311 DASQWN010000000
VERSION     DASQWN010000311.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2955)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2955)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2955
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_648943"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(154..2550)
                     /locus_tag="VE686_05975"
     CDS             complement(154..2550)
                     /locus_tag="VE686_05975"
                     /inference="COORDINATES: protein motif:HMM:NF012602.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin-dependent oxidoreductase"
                     /protein_id="HYY84033.1"
                     /translation="MLADKPSSERIPGHCAQCVSRCGSIAVIENGRFVALEPDPSHPT
                     GKALCAKGRAAPELVYHPERLLHPVKRTRPKGDLDPGWQRISWDEALDLTAARLRRIA
                     EEHGPQSVVFSVASPSTSASEDSLVWLQRLKNAFGSPNLCGSMELCGWGRYLAPLYTF
                     GASVPGDYMPDLENAGCILFWGYNPNLARLVHATATVEARKRGARLIVVDPRRTGPAN
                     KADIWLRVRPGTDGALALGIAQVMIQHGWYDREFIRDWTNGPLLVRTDSGRLLTHSDL
                     SAGGSAQQYVAWNEMTGRPIVYDPATGGYEGDDPRPALFGTFAIQTPRGEVTCRPAFA
                     LTAELCRRYPPERVEAICGIDRGQIEATARMLWEERPVAYYAWSGVEMQTGSTQIARA
                     IAQLYALTGSFDARGANVLFAAVPTADATGAELLPAEQRARALGLPERPLGPSRWDFV
                     ASEEVYRGILERQPYGVRGMVGFGANLLLAHANARRGREALMALDFYVHADLFMNPTA
                     ELADVVLPVASAFEREALKIGFEVSPDAQSLVQLRQRVVEPRGEARSDTEIIFDLASR
                     LGLGAHFWDGDIEAAYCHQLGPSGVSLEALREQPGGVRVPLRTRYRKFAEQEDGVPRG
                     FNTPTRKVELYSETMLEHDYSPLPEYEEPLMSPSSRPDLAKQYPLILTCAKHTLFCES
                     QHRALPSLRRRAMDPEVELHPMAAAERGIGPGDWVYIKTPEGSVRARARMNDTLETNV
                     VCGQHGWWQACADLGKPGYDPLGPDGANLNLIIGNEAIDPVSGSVPHRAYLCQIRRAS
                     "
     gene            2823..>2955
                     /locus_tag="VE686_05980"
     CDS             2823..>2955
                     /locus_tag="VE686_05980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007558556.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000150 - DNA strand exchange activity
                     [Evidence IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase family protein"
                     /protein_id="HYY84034.1"
                     /translation="MRVGYARVSRKDQRLEPQRDALLADGCERVFEEKVSSREVDRKA
                     "
BASE COUNT          549 a          943 c          947 g          516 t
ORIGIN      
        1 gtagaccagc cagatttatc agcgccgcga ccgccctagg aagcccgtaa ggaggttgag
       61 gaacatactt accgtcggca ccaagtgcgt gggcggcggc tcagccctgg cactaacgcg
      121 aaggcttcaa ccccgaaaga atcgccggaa cccttaactc gcgcgacgga tctgacagag
      181 gtaggcgcgg tgcgggaccg agccgctgac cgggtcgatc gcctcgttgc cgataatgag
      241 gtttagattg gccccgtccg gaccgagcgg gtcgtagccg ggcttgccaa ggtccgcgca
      301 ggcctgccac cagccgtgct ggccgcacac aacgttcgtc tcaagcgtgt cattcatccg
      361 ggcacgcgcc cgaacgctgc cttcgggtgt cttgatgtac acccaatcac cggggccgat
      421 gccgcgctcg gcggcggcca tcggatgcag ttcgacctcc gggtccatgg ctcgccgtcg
      481 caggcttggc agggcacggt gctggctctc gcaaaacagg gtatgcttgg cgcaggtgag
      541 gatcaagggg tattgcttgg caagatccgg ccgcgacgat ggactcatca gcggctcttc
      601 atactcaggc agcggcgagt agtcatgttc cagcatcgtc tccgagtaca attcgacctt
      661 ccgtgtcggg gtgttgaagc cacgcggtac gccgtcctct tgctcggcga acttgcggta
      721 gcgcgtccgt aggggcaccc gcactccacc cggctgctca cgcagcgctt ccagcgacac
      781 gccggacggg ccaagctggt ggcaatacgc ggcctcaatg tcgccgtccc agaagtgggc
      841 gccgagaccc aggcggctcg ccaggtcgaa gatgatctcg gtgtcggagc gggcctcgcc
      901 ccgtggctcg accacccgtt ggcgcaactg caccagcgat tgagcgtcag gactcacctc
      961 gaagccgatc ttgagggcct cgcgttcgaa agcgctggca accggtagca cgacatcggc
     1021 gagttcggcc gtcgggttca tgaagaggtc ggcgtggacg tagaagtcga gcgccatcag
     1081 ggcttcgcgc ccacgccggg cgttggcgtg cgcaaggagc aggttggcgc cgaagccgac
     1141 cattccgcgc accccgtatg gctgccgctc cagaatcccc cgatatacct cctccgaggc
     1201 gacaaagtcc caccgggatg gacctagcgg ccgctccggc aggccgagtg cccgcgcgcg
     1261 ctgctcggcc ggcagcaatt ccgcaccggt tgcatccgcc gttggcacgg ccgcaaagag
     1321 aacgttggcc ccccgtgcgt cgaagctgcc ggtcagggca taaagctggg cgatcgcccg
     1381 ggcgatctgg gtggagcccg tctgcatctc gacgccgctc caagcatagt aggcgacagg
     1441 ccgttcttcc cagagcatcc gggccgtcgc ctcgatctgg ccgcgatcga tgccacagat
     1501 tgcttccacc cgctctggcg gatagcgccg gcacagttcg gcggtgagcg cgaatgccgg
     1561 ccggcaggta acctcgcccc gtggcgtctg gatagcgaac gtgccgaaaa gggccggccg
     1621 tggatcgtct ccttcgtagc cgccggtggc ggggtcatag acgatcggac ggcccgtcat
     1681 ctcgttccag gccacgtact gctgggcact gccccccgca ctcagatcgc tgtgggtcag
     1741 taaacggccg ctatccgtgc gcacgagcag tgggccgttc gtccagtcgc ggatgaattc
     1801 acgatcgtac cagccgtgct ggatcatgac ctgggcgata ccgagggcaa gggcgccatc
     1861 ggtgcccggc cgcacgcgca gccagatgtc ggccttgttg gcgggcccgg tgcggcgagg
     1921 gtcaacgacg atcaggcggg cgccgcgttt gcgcgcctcc acggtggccg tcgcgtgaac
     1981 caaccgggca aggttcgggt tgtagcccca gaacaggata cagccggcat tctcgaggtc
     2041 gggcatataa tcgccaggaa cgctagcgcc gaaggtatac agcggggcca gataccgtcc
     2101 ccacccgcac agctccatcg atccgcatag gtttggactt ccaaacgcat ttttcagacg
     2161 ctgtaaccag acaagcgagt cctccgaggc cgacgtagac ggggaggcca cgctgaagac
     2221 gacgctctgt ggaccgtgct cttcggcgat cctacgcagc ctggcagcag tcaggtcaag
     2281 cgcttcgtcc caactgatcc gctgccagcc cgggtcgaga tcgcccttcg gccgcgtgcg
     2341 cttcacggga tgtagcagcc gctcagggtg atagacgagc tccggtgccg ccctcccctt
     2401 ggcgcagagt gccttgccgg tcgggtgcga cggatccggc tcaagggcaa caaagcggcc
     2461 gttctcgatc acggcgatcg aaccacaacg cgaaacgcac tgggcgcagt ggcccgggat
     2521 ccgctcgctc gatggcttgt ctgctagcat cgtgatgcct tcttactaga gtgccaaccg
     2581 gtgatgttcc ctaataatga gcggttctgg aagccagcgc atcactcatt tgccgtattt
     2641 agtccatctg cctcaaataa gcgccgcttg ctcaacgacg tatcgaaaac gctcgatttg
     2701 gagaaacgat cgtcgagtcc caataatgcg tcccgtaacg tcgctgtcgc gtcccgaaac
     2761 cctatcccga ttgcgaaatc ccgctacttg ataatcgaac cgttttcggg acaatgtaat
     2821 taatgagagt gggctacgcg agagtctcga ggaaggacca gagactggag ccgcagcgag
     2881 acgcacttct agcggatggc tgcgagaggg tcttcgagga gaaggtctcc agcagggagg
     2941 ttgataggaa ggcct
//
LOCUS       DASQWN010000312         2863 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1046812, whole genome shotgun sequence.
ACCESSION   DASQWN010000312 DASQWN010000000
VERSION     DASQWN010000312.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2863)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2863)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2863
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1046812"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..156)
                     /locus_tag="VE686_05985"
     CDS             complement(<1..156)
                     /locus_tag="VE686_05985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007613067.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HYY84035.1"
                     /translation="MKIVVFGLTISSSWGNGHATLWRALCRALARRGHEVVFYERDVP
                     YYAENRDL"
     gene            complement(153..749)
                     /locus_tag="VE686_05990"
     CDS             complement(153..749)
                     /locus_tag="VE686_05990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015927792.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine phosphatase family protein"
                     /protein_id="HYY84036.1"
                     /translation="MTTLFLVRHAAHDLVGKALCGRMPGVKLGAEGRAQAERLAARLS
                     RETIAAVQASPLERARETAEPIARHFGLGVEVAEAVNEIDVGAWTGKPFDELRDDPRW
                     TLWNSARSVARAPGGETMLEVQARTLSHMEPLRARFADQGVVIVSHADVIKAALAYCL
                     GLSLDGLQRFDIAPASLSAVVIGDWGAKVLSVNEVAAS"
     gene            complement(757..1848)
                     /locus_tag="VE686_05995"
     CDS             complement(757..1848)
                     /locus_tag="VE686_05995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009493143.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inositol-3-phosphate synthase"
                     /protein_id="HYY84037.1"
                     /translation="MSRRKLRVGIVGVGNCASSLVQGLTYYREAKANEPVPGLMNVEL
                     GGYHVGDIEISAAFDIAASKVGRDVSEAIYAPPNNTHRFATAPETGTIVHRGRTLDGL
                     GKYLRDEIPESKEREADVTEVLGRSGTDVVVSYLPVGSQEATEFYAERALEAGCAFVN
                     CIPVFIASDPTWRRKFEDRNLPIIGDDIKSQVGATIVHRMLANLFRERGVRLDRTYQL
                     NFGGNTDFQNMLERERLESKKISKTRAVTSQLDMPMAPEDIHVGPSDHVPWLTDRKWA
                     YIRMEGTTFGGVPLNVELKLEVWDSPNSAGVVIDAVRCAKLAKDRGIGGALVGPSSYF
                     MKSPPQQFTDAEARERTLRFVAGDGETHH"
     gene            2102..2689
                     /locus_tag="VE686_06000"
     CDS             2102..2689
                     /locus_tag="VE686_06000"
                     /EC_number="3.6.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010686950.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX hydrolase"
                     /protein_id="HYY84038.1"
                     /translation="MTHEIIALEQVHDGWAKLYVATVRLPDGRTMRREIEDHGEAVTV
                     LPYDPQRRTAMVIRQFRAPPFHVARVETTLEAPAGILDEDDPEACARREAMEEIGLRL
                     TTLEPVAVAWGMPGISTERAHLFLARYSAADRVDAGGGLEHEHEEIEVCELALDDLAA
                     HADRGGVADLKLLVLVQTLRLRHPDLFDACPPKKS"
BASE COUNT          484 a          978 c          964 g          437 t
ORIGIN      
        1 gagatcgcga ttctcggcgt agtacggcac gtcgcgctcg tagaacacga cttcgtgacc
       61 acggcgcgcc agggcgcggc agagagcccg ccacaaggtc gcgtggccat tgccccatga
      121 cgacgaaatc gtgaggccga agacgacgat cttcatgacg ccgcgacctc gttgacggac
      181 agcaccttgg cgccccagtc gccgatcact accgcgctca gcgaggccgg cgcgatgtcg
      241 aaccgctgca gtccatcgag cgatagcccg aggcagtagg cgagggccgc cttgatgacg
      301 tcggcgtggc tcacgatcac tacgccctga tcggcgaagc gcgcgcgcaa aggttccatg
      361 tgggagagcg tccgcgcctg aacctcgagc atggtctcgc cgccgggcgc tcgcgcgacg
      421 ctgcgggccg agttccacaa cgtccagcgg gggtcgtcgc gcaactcgtc gaagggcttc
      481 ccggtccacg cgccgacgtc gatctcgttg acggcctcgg cgacctcgac cccgagccca
      541 aaatgccgcg cgatcggctc cgccgtctcg cgggcgcgtt cgagaggact cgcctgtacg
      601 gccgcgatcg tctcgcgcga cagccgggcc gcaagcctct cggcctgcgc gcggccctcc
      661 gcgccgagct tcacgcccgg catgcgcccg cacagcgcct tgcccaccag gtcgtgggcg
      721 gcgtggcgga cgaggaacaa cgtggtcact gccgcctcag tgatgggtct cgccatcgcc
      781 ggcgacgaaa cggagcgtgc gctcgcgcgc ctccgcgtcg gtgaactgct gcggcggcga
      841 cttcatgaag tagctcgacg gcccgacgag cgcgccgccg atgccgcggt ccttcgcgag
      901 cttggcgcag cgcaccgcgt cgatcacgac ccctgcggaa ttcggagaat cccacacctc
      961 gagcttgagc tcgacgttga ggggcacgcc gccgaacgtc gtgccttcca tgcggatgta
     1021 ggcccacttg cggtccgtca gccacggcac gtgatcgctg gggccgacgt ggatgtcctc
     1081 cggcgccatg ggcatgtcga gctggctcgt cacggcgcgc gtcttcgaaa tcttcttcga
     1141 ctcgaggcgc tcgcgctcga gcatattctg gaagtcggtg ttgccgccga agttgagctg
     1201 ataggtgcgg tcgagccgca cgccgcgctc gcggaagaga ttggcgagca tgcgatggac
     1261 gatcgtcgcg ccgacctggc tcttgatatc gtcgccgatg atcgggaggt tgcggtcctc
     1321 gaacttccgc cgccaggtcg ggtcggaggc gatgaagacg gggatgcagt tcacgaacgc
     1381 gcagccggcc tcgagcgccc gctccgcgta gaactcagtc gcctcttgcg atccgacagg
     1441 aagataggac acgacgacgt cggtgccgga cctgccgagc acctcggtga cgtcggcctc
     1501 gcgctccttc gactccggga tctcgtcgcg cagatacttg cccagcccgt caagcgtccg
     1561 gccgcggtgg acgatcgtgc cggtctcggg cgccgtcgca aagcggtggg tgttgttcgg
     1621 cggcgcgtag atcgcctccg acacgtcgcg gccgaccttc gaagcggcga tgtcgaatgc
     1681 cgccgatatc tcgatgtcgc cgacgtggta gccgcccagt tcgacgttca tgaggcccgg
     1741 gacgggctca ttcgccttgg cctcgcggta gtaggtcagg ccttggacga gggaagacgc
     1801 gcagtttcct acgccgacga tccccacgcg gagttttcta cggctcaagg cggcgactcc
     1861 tcccagcgcg gccacgacgt ggcctcgaca tccaagccga cccgcaaggg cccgctatcc
     1921 cgtccgaagg cggcacggcc gggagaaagc tcgcactaaa aatgcccaag cttcgatcta
     1981 caaacgtgac gggggagaga gttgttccct ctggaaggaa ccggctcagg ccggaggctc
     2041 tgaactgccg ccccgccccg aggttatgca cgggcttatc acgtcgagcc caggaagagc
     2101 catgacgcac gaaatcatcg cgctcgagca ggtgcacgac ggctgggcga agctctacgt
     2161 ggccaccgtg cgtctgcccg acggcaggac gatgaggagg gagatcgagg accacggcga
     2221 ggccgtgacg gtcctgccct acgacccgca acggcgcacc gcgatggtca tccggcagtt
     2281 ccgcgcgccg ccgttccacg tagcgcgcgt agagacgacc ctcgaggccc cggccggcat
     2341 cctcgacgag gacgaccccg aggcctgcgc ccggcgggaa gccatggagg aaatcggcct
     2401 gcggctgacg acgctcgagc ccgtcgcggt cgcctggggg atgcccggca tctcgacgga
     2461 gcgcgcccac ctcttcctcg ctcggtactc ggccgcggat cgcgtcgacg cgggcggcgg
     2521 gctcgagcac gagcacgagg agatcgaggt gtgcgagttg gcgctcgatg acctcgcggc
     2581 gcacgcggat cgcggcgggg tcgccgatct gaagcttctc gtgctcgtac aaacgctgcg
     2641 gctacgccat cccgacctct tcgatgcttg tccaccaaag aagtcctagc agcgaagatc
     2701 gccctcctag ggaacaaaga tgatgccggc cacgttaggc cgaagaacgg ccaagctgcg
     2761 aagggcgccc catgtcgacg actgcagccc ggaccgacct tatcgggcct gagaacgtcc
     2821 gggcccccgc cgacgcaagc actaggggat cgcacagtgg cgg
//
LOCUS       DASQWN010000313         4529 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_920668, whole genome shotgun sequence.
ACCESSION   DASQWN010000313 DASQWN010000000
VERSION     DASQWN010000313.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 4529)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4529)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4529
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_920668"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..881
                     /locus_tag="VE686_06005"
     CDS             <1..881
                     /locus_tag="VE686_06005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007593564.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0042597 - periplasmic space [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="tripartite tricarboxylate transporter substrate
                     binding protein"
                     /protein_id="HYY84039.1"
                     /translation="MLCPWGAGGGTDATARIVAALLEKDFGQPVNVVNRVGGSGVVGH
                     SAIATSPPDGYTLGIITVEISMMHWQGLTELTPRSYTPLALMNEDPPGIQVRADAPYK
                     NVKELADAIKAAPPGKLKASGTGQGGIWHLALVGWLQAMGLKPDHVAWVPSNGAAPAM
                     QDLAAGGIDLVPCSVPEGRAMIEAGKAKSLAIMAAQRNPTFPNVPTLKEEMGIDYATG
                     AWRGFAAPKGLPADMAAKLTAALKKVYESKEYNDFMSSRGFGVKWADGPGFAQFMDAG
                     DAQMGVAMKAAGLAKA"
     gene            1017..1490
                     /locus_tag="VE686_06010"
     CDS             1017..1490
                     /locus_tag="VE686_06010"
                     /inference="COORDINATES: protein motif:HMM:NF018979.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tripartite tricarboxylate transporter TctB
                     family protein"
                     /protein_id="HYY84040.1"
                     /translation="MRANDAVTGIVLILFAGIMIALTASFPAFPGQKYGPALFPRILG
                     AGLIVCGAVLVWRGLAARRAGEPLITFAEWTARPGSGFAFALILASILLYIFASEAVG
                     FIPIAVVILAVLFLWFGVRWVVAIPTAIVATWAIHWFFASAMRVPLPRGWLDNVL"
     gene            1504..3009
                     /locus_tag="VE686_06015"
     CDS             1504..3009
                     /locus_tag="VE686_06015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019404715.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tripartite tricarboxylate transporter permease"
                     /protein_id="HYY84041.1"
                     /translation="MDAIVLAFGLVFQFKVLWVIAASAAFGMFVGAMPGLTATMATAL
                     LVPVTFFMEPVPALGAIVTATAMAIFAGDIPAAMLRMPGTPASAAYTDESYLMSKKGL
                     LDLNLGVNLVFSVLGGLFGVVILVVAAPALAELAINFSSFEYFWLAALGLSCAVFIAT
                     EDPLKGFVSLLLGLIIGTIGIDPAAGFPRFTFGNVDLMSGISFIPAMIGMFAISEILR
                     NATAMGEVTEKIQQQVGNIFRGLGPVFRRYWKNFFRGSVLGTLIGALPGAGADIAAWI
                     SYAVSKRFSKEPEKFGTGHIEGIVDSTSANNSALGGAWIPALVFGIPGDSITAIVIGV
                     LYMKGMNPGPTVFLQNPQFIYAVFIIFVLANLLMLPLGWLAIKSAKQILRVPRNVLVP
                     LILMFCIVGSYAMTNSIYAVVVMLAMGVLGWLMEENGIPIAPAILGLVLGEMFEQNFM
                     TSMIKSDGSLIGFFNRPIAATLGVLTLATWGWMIFKGVRSSLSPPVRESIP"
     gene            complement(3052..4338)
                     /locus_tag="VE686_06020"
     CDS             complement(3052..4338)
                     /locus_tag="VE686_06020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009208026.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0031317 - tripartite ATP-independent
                     periplasmic transporter complex [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0008643 - carbohydrate transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TRAP transporter large permease"
                     /protein_id="HYY84042.1"
                     /translation="MTTFMITAMVVLFALSVPIAIAIIAAAVGGIVFFERLPLIVVAQ
                     KMMTTLDSFPLMAVPFFILAGNLMEAGGISRRLVDFAKAVVGGLQGGLACSCVLTCMI
                     FASVSGSSVATTFAIGAIIIPAMIDHKYPREFATALQATAAELGVIIPPSIPMILYGV
                     SAEVSIGEMFIAGIGPGLLIGGVLTLFVYVLCKLNGWGRDDREGRIGLVRATERAALA
                     LIMPVIIIGGIYRGVFTPTEASVVAVFYALVVGMGVYRAISPSDLAAILRKSVISSAM
                     IMFIIAAAGLFSFLITRAGVPAAVGAWISLTMGSAAVFLLAVNVFLFIVGMFIETSAS
                     IIVLAPILAPVAKQFGVDPVHFGLIMVVNLALGMITPPFGVNLFAACQVANISLERIV
                     PRLVPFVVVVFSCLMIITYVPQISLFFRDLVYVAQP"
BASE COUNT          757 a         1513 c         1501 g          758 t
ORIGIN      
        1 agatgctctg cccctggggc gcgggcggcg gaacggatgc gacggcgcgc attgtcgcgg
       61 cgcttctcga gaaggacttc ggccagccgg tcaacgtcgt caaccgcgtc ggcggctccg
      121 gcgtcgtcgg ccactcggcc atcgcgacct cgccgccgga cggttacacg ctcggcatca
      181 tcacggtcga gatttcgatg atgcattggc aggggctgac ggagcttacg ccgcgcagct
      241 acacgcccct ggcgctgatg aacgaggacc cacccgggat ccaggtccgc gccgacgcac
      301 cctacaagaa cgtcaaggag ctcgccgacg ctatcaaggc cgcacctccc ggcaagctca
      361 aggcgtccgg aacgggccag ggcggcatct ggcacctcgc cctcgtcggc tggctccagg
      421 cgatgggcct caagcccgac cacgtcgcgt gggttccctc gaacggtgcc gcgccggcga
      481 tgcaggacct cgcggccggc ggcatcgacc tcgttccctg ctcggtgccg gaaggacggg
      541 ccatgatcga ggctgggaag gcgaagagcc tcgctatcat ggctgcgcag cgcaacccga
      601 ccttcccgaa cgtgcccacc ctcaaggagg agatgggcat cgattacgcg acgggcgcgt
      661 ggcgcgggtt tgcggcgccg aaaggccttc cggccgacat ggccgcgaag ctaacggctg
      721 cgctcaagaa ggtctacgag tcgaaggagt acaacgactt catgtcgagc cgcgggttcg
      781 gggtgaaatg ggccgacggg ccgggctttg cccagttcat ggatgccggc gacgcgcaga
      841 tgggcgtcgc catgaaggcc gccgggctcg ccaaggcgta acatccactc aagcaccgtc
      901 accctcgggc gcgcgcagcg cgaccgagga cctcgtgggg gttggacgcc ttctgcgtcc
      961 cgaggtcctc ggctctgcgc cttgctccgg ccgaggatga cgccaggaca agagcaatgc
     1021 gcgccaacga cgccgtgacg ggaatcgtcc tcatcctttt cgccgggatc atgatcgcgc
     1081 tcacggcgag cttcccggcg tttccgggcc agaaatacgg gcccgccctg ttcccgcgca
     1141 tcctcggggc cgggctgatc gtctgcggag cggtcctggt ctggcgcggc ctcgcggcgc
     1201 gccgggccgg cgagcccctg atcaccttcg cggagtggac cgcccggcca ggcagcggct
     1261 tcgccttcgc gctcatcctc gccagcatcc tgctctacat cttcgcttcc gaagcggtgg
     1321 gtttcatccc gattgcggtg gtgatcttag ccgttctctt cctttggttc ggcgtgcgct
     1381 gggtcgttgc catcccgact gcgatcgtgg cgacctgggc gatccactgg tttttcgctt
     1441 ccgccatgcg cgtgccgctg ccccgcggct ggctcgacaa cgttctgtaa aggaggggcc
     1501 accatggacg cgatcgtctt ggccttcggc ctcgttttcc aattcaaggt gctttgggtc
     1561 atcgcggcct cggcggcctt cgggatgttc gtcggcgcga tgcccgggct caccgcgacg
     1621 atggcgacgg cgctcctcgt gccggtgacg tttttcatgg agccggttcc ggccctcgga
     1681 gccatcgtga ccgcgaccgc catggccatc ttcgcggggg acatcccggc ggcgatgctg
     1741 cgcatgcctg ggacgccggc ctcggccgcc tacacggacg agagctacct catgtcgaag
     1801 aaggggctcc tcgacctgaa cctcggggtg aacctggtct tctcggtcct cggcgggctt
     1861 ttcggggtcg tcatcctggt cgtcgcggct cccgcacttg cggagctcgc catcaatttc
     1921 tcctccttcg agtacttctg gctcgctgcg ctcgggctgt cctgcgccgt gttcatcgcg
     1981 accgaggacc cgctcaaggg cttcgtatcc cttctgctgg ggctgatcat cgggaccatc
     2041 gggatcgatc ccgcagccgg cttcccgcgc ttcacattcg gcaacgtcga cctcatgtcg
     2101 gggatctcgt tcatcccggc gatgatcggc atgttcgcca tttcagagat cctgcgcaac
     2161 gcgacggcca tgggcgaggt caccgagaag atccagcagc aggtcggcaa catcttccgc
     2221 gggctcggtc cggtgttccg gcgctactgg aagaacttct tccgcggctc tgtcctcggc
     2281 acgctcatcg gtgctctgcc gggagccggc gccgacatcg cggcgtggat ctcctacgcg
     2341 gtgtcgaagc gcttctccaa ggagccggag aagttcggca ccgggcacat cgaaggcatc
     2401 gtcgattcca cgtcggccaa caactcagcg cttggtggcg cctggatccc ggcgctggtg
     2461 ttcggcatcc cgggcgactc gatcacggct atcgtcatcg gcgtgctcta catgaagggc
     2521 atgaaccccg ggccgacggt gttcctgcag aacccgcagt tcatctatgc ggtgttcatc
     2581 atcttcgtgc tcgcgaacct gctgatgctg ccgctcggct ggctcgccat caaatcggcg
     2641 aagcagatcc tcagggtgcc gcgcaacgtc ctcgtgccgc tgatcctgat gttctgcatc
     2701 gtcggatcct acgccatgac caactccatc tacgcggtgg tcgtgatgct tgccatgggc
     2761 gtgctcggct ggctcatgga ggagaacggc atcccgatcg ccccggcgat cctcggcctc
     2821 gtgctcggcg agatgttcga gcagaacttc atgacctcga tgatcaagtc ggatggctcg
     2881 ctcatcggct tcttcaaccg cccgatcgcc gcgacgctgg gcgtcctgac cctcgccacc
     2941 tggggctgga tgatcttcaa aggagtgcgc tcgagcctct ccccgcccgt gcgggagtcc
     3001 ataccttagc aaggtcggga gctggcgccc ggcgccggcc gccgcgctgc gtcaaggctg
     3061 ggcgacgtag acgaggtcgc ggaagaacag cgaaatctgc ggcacgtacg tgatgatcat
     3121 gaggcagctg aacaccacga cgacgaaagg cacgaggcgc ggcacgatgc gctcgaggct
     3181 gatgttcgcc acctgacagg cggcgaacag gtttacgccg aacggcggcg tgatcatgcc
     3241 gagcgccagg ttcaccacca tgatgagccc gaagtgcacg ggatcgaccc cgaactgctt
     3301 cgccaccggc gcgaggatcg gcgcgagcac gatgatcgag gccgaggtct cgatgaacat
     3361 cccgacgatg aacaaaaaca cgttgacggc gagcaggaac accgccgccg agcccatggt
     3421 gagcgagatc caggcgccga ccgccgccgg caccccggcc cgggtgatga ggaagctgaa
     3481 cagccccgct gccgcgatga tgaacatgat catcgccgac gagatcaccg acttgcgcag
     3541 gatggcggcc agatcggagg gcgagatcgc acggtacacg cccatgccga caacgagcgc
     3601 gtagaacacc gcgacgacgg aggcttcggt cggcgtgaac acgccgcggt agatgccgcc
     3661 gatgatgatc accggcatga tcagcgccag cgccgcgcgc tccgtcgcgc ggacgaggcc
     3721 gatgcggccc tcgcggtcgt cccggcccca gccgttgagc ttgcacagga cgtagacgaa
     3781 caacgtcagc acgccgccga tgagcaggcc agggccgatg ccggcgatga acatctcgcc
     3841 gatcgagacc tcggcgctga cgccataaag gatcatcggg atcgacggcg ggatgatgac
     3901 gccgagttcg gcggcggtcg cctgcagggc agtcgcgaac tcgcgcgggt atttgtggtc
     3961 gatcatggcc ggaatgatga tcgcgccgat cgcgaaggtg gtcgcgacgc tcgaccccga
     4021 caccgaggcg aagatcatgc aggtgagcac gcacgagcac gcgagcccgc cctggaggcc
     4081 gccgacgacg gccttggcaa agtcgacgag ccggcgcgag atgccgcccg cttccatcag
     4141 gttgccggcg aggatgaaga acggcaccgc catcaggggg aaagagtcga gcgtcgtcat
     4201 catcttctgc gcgacgacga tcagcggcag gcgctcgaag aacacgatgc cgccgaccgc
     4261 ggcggcgatg atggcgatgg cgattgggac gctgagcgcg aacaacacca ccatggcggt
     4321 gatcatgaag gtggtcatgc ggccggagcg ctcctagacc tcgaacatct cgcgcgggcc
     4381 ttccggctcg ggtgcctcgc cgagcgccgc ccggatctcc tcgacggcgc gggccagcgc
     4441 cccgacgatg gcgagcgcgg cgccgaccgg cacggccgcg tagacgagag cgatggaaag
     4501 cccctccccg gtgaacggat tgtcgacgc
//
LOCUS       DASQWN010000314         2114 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1345651, whole genome shotgun sequence.
ACCESSION   DASQWN010000314 DASQWN010000000
VERSION     DASQWN010000314.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2114)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2114)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2114
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1345651"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(132..1013)
                     /locus_tag="VE686_06025"
     CDS             complement(132..1013)
                     /locus_tag="VE686_06025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008834022.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing GNAT family
                     N-acetyltransferase"
                     /protein_id="HYY84043.1"
                     /translation="MQIDHVRKVRRFNRTVTQRVGALDQSYLDRGRPLGEARLIYEIG
                     RAGVDLRVLREKLALDSGYLSRLLRSLERQGLVEVRSTARDRRTRRVTLTLRGVAELE
                     AYDAQSDALATSLLEPLDAERRARLVAAMAEVEQLLHAGEIEIRVEPPDGPDATACLG
                     AYFNELADRFEDGFDATIPHAARPEQLTPPAGYFMVARLHGRVAGCGALKLVGDGIGE
                     VKRMWTADFARGQGVARTVLATIEAKARAVGVHTLRLETNKALREAHALYRSAGYREV
                     PAFNEEPYAHHWFAKQL"
     gene            1162..>2114
                     /locus_tag="VE686_06030"
     CDS             1162..>2114
                     /locus_tag="VE686_06030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007196279.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AMP-binding protein"
                     /protein_id="HYY84044.1"
                     /translation="MQGLMQDWPLLVHRIIDHAAAQHGNRPVISRSVEGPIHRTTYGE
                     IRQRSLRVAKRLTQDGIKLGDRVATLAWNTWRHLETWYGIAGIGAVYHTVNPRLFEDQ
                     LVYIINHAEDRLLFLDLTFVPLIEKIAARLETIERYVVLTDAEHMPETKLRNAVAYED
                     WIGEVDDDFVWGWFDENTAAGMCYTSGTTGNPKGVLYSHRSNVLHSLAAIQPDMLGLS
                     ARDIALPVVPLFHANGWSFAFSAPMTGASLVFPGARLDGPSVHELLVSERVTISAAVP
                     TIWFALLQHMEKVGADLPDLKRVVIGGSACPRAVTQKFRDN"
BASE COUNT          320 a          735 c          713 g          346 t
ORIGIN      
        1 gccagatcgg tggtttgttc gggtagccgc cgctcttgcc gacttgccga agccggtgtg
       61 ccggtcgtgc tcgccggcga cctcaacgtg ctggcaacgg tcttgccgag tgggtcgtcg
      121 acgcggcttg cctacagctg cttcgcgaac cagtggtggg cgtagggctc ttcgttgaag
      181 gccgggactt cgcggtagcc ggcggagcgg taaagcgcgt gggcctcccg gagggccttg
      241 ttggtctcga gccggagcgt gtggacgccg accgcgcggg ccttcgcctc gatggttgcg
      301 aggaccgtgc gcgccacgcc ctggccccgg gcaaagtcgg ccgtccacat gcgcttcacc
      361 tcaccgatgc cgtcgcccac gagcttcagg gcgccgcagc cggcgacccg gccgtgcagg
      421 cgcgccacca tgaagtagcc ggcgggaggc gtcagctgct cgggtcgggc ggcatgcggg
      481 attgtcgcat cgaagccgtc ctcgaaccgg tcggcaagct cgttgaagta cgcaccgagg
      541 caggccgtcg cgtcaggacc gtccggcggc tcaacccgga tctcgatctc gccggcatgg
      601 agcaactgct cgacctcggc catggcggcg acgaggcgcg cccgccgttc ggcatcgagg
      661 ggctcgagca gggacgtcgc gagcgcgtcc gattgcgcgt cataggcttc gagctcggcg
      721 acaccgcgca gggtgagcgt tacgcgccgc gtgcggcggt cgcgcgccgt cgagcgcacc
      781 tcgacgaggc cctgccgctc cagcgacctc aggagccggc tgagatagcc cgagtcgagg
      841 gcgagcttct cgcgcaggac ccgcaggtcg acgccggcgc gcccgatctc gtagatgagc
      901 cgcgcctcgc cgaggggccg tccgcggtcg agatagctct ggtcgagcgc tcccacccgc
      961 tgggtgaccg tgcggttgaa acggcggacc ttgcgcacgt gatcgatctg cattgctgac
     1021 catagtcaga caatcgcctg cagggcaatc ggccgttagc gcccggtctc ttcctcccgc
     1081 tgggccttgg cggctcgtcg agggcgacct aagctgcgcc ccaagatgcg cccgcagaag
     1141 acgggcccgg agggactccc aatgcaaggc ctgatgcagg attggcccct gcttgttcac
     1201 cgcatcatcg atcacgccgc ggctcagcac ggcaatcgcc ccgtcatctc gcggtccgtc
     1261 gagggcccga tccaccgcac cacctacggc gagatccggc agcggtcgct gcgtgtggcg
     1321 aagcgtctga cgcaggacgg catcaagctt ggcgaccgcg tcgcgacgct cgcctggaac
     1381 acctggcgcc acctcgagac ctggtacggc atcgccggca tcggcgccgt ctatcacacg
     1441 gtcaatccgc ggctgttcga agaccagctc gtctacatca tcaaccacgc cgaggaccgc
     1501 ctgctcttcc tcgacctgac cttcgtgccg ctgatcgaga agatcgcggc gcggctcgag
     1561 acgatcgagc gctacgtggt gctcaccgac gccgagcata tgccggagac gaagctccgc
     1621 aacgcggtgg cgtacgagga ctggatcggc gaggtcgacg acgattttgt ctggggctgg
     1681 ttcgacgaga ataccgcggc gggcatgtgc tacacctcgg gcacgaccgg caacccgaag
     1741 ggcgtgctct attcgcaccg ctcgaacgtg ctgcactcgc tcgccgccat ccagcccgac
     1801 atgctcggcc tctcggcccg cgacattgcg ctgccggtgg tgcccttgtt ccacgccaac
     1861 ggctggtcgt ttgccttctc ggccccgatg accggcgcct cgctggtgtt cccgggggcg
     1921 cggctcgatg gaccctccgt gcacgaactc ctcgtcagcg aacgcgtcac catcagcgcg
     1981 gcagtgccga ccatctggtt cgcgcttttg cagcacatgg agaaggtcgg tgccgacctg
     2041 ccggacctca agcgcgtcgt catcggcggc tcggcatgcc cccgggcggt gacccagaaa
     2101 ttccgcgaca acta
//
LOCUS       DASQWN010000315         2144 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_56232, whole genome shotgun sequence.
ACCESSION   DASQWN010000315 DASQWN010000000
VERSION     DASQWN010000315.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2144)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2144)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2144
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_56232"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1218)
                     /gene="mutL"
                     /locus_tag="VE686_06035"
     CDS             complement(<1..1218)
                     /gene="mutL"
                     /locus_tag="VE686_06035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017483854.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006298 - mismatch repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA mismatch repair endonuclease MutL"
                     /protein_id="HYY84045.1"
                     /translation="MSVRRLDPILVDRIAAGEVVERPASAVKELVENAIDAGARAIEV
                     RVEAGGRELIRVVDDGCGMSPEDLALAVERHATSKLPDGDLSRIGTLGFRGEALPSIG
                     AVARLAITTRTADAVTGAAMLVEAGVRDEVRPAAASRGTRVEVTDLFAATPARLKFLK
                     SDRAEAQAVAEVVRRLAIAHPAIRFSLGGEHLTSAVFAPEGEGEAGFLARAARVLGAD
                     FTDNAVPVSIGREGFALSGHVGLPTFHRAASTHVHFVVNGRPVRDKLLLSAVRGAYAD
                     VMASDRHPVLALSIACDPRAVDVNVHPAKTEVRFRDPGHVRALVVSAIKDALARAGFR
                     AASTGGARTLEALRRAAGSSWPTSSWPSQQRGPAPVDATAWSGWQAPYEPAPAAAYGG
                     FAEAPQGGLAELAP"
     gene            complement(1218..>2144)
                     /locus_tag="VE686_06040"
     CDS             complement(1218..>2144)
                     /locus_tag="VE686_06040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009494682.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-6-phosphate isomerase"
                     /protein_id="HYY84046.1"
                     /translation="LPLASTRFVAISKSGGTGETLMQTIAVLSAIERAGLRSRPGDLM
                     LGLSEPRKGGRHALRDLLEPEGVDFLDHHTGVGGRYSVLTNVGLLPAAVLGLDIAAVR
                     QGALDAWAPIRDGAAAADAPAALGAALSTAAAFEGKAVTVLMGYADRLERLTRWWVQL
                     WAESLGKDGKGTQPVAAIGPVDQHSQQQLYLAGPKDKLFTVITVDVAGKGPVIDAELA
                     RRAGEPGFAGRHVGDLVAAQGRAMADTFAKNGCPTRQIHVPALDERALGELLMHFMLE
                     TILTGYALGVDPFDQPAVEEAKLLAKQYLTEG"
BASE COUNT          286 a          760 c          830 g          268 t
ORIGIN      
        1 cggggcgagc tctgcgagcc cgccttgcgg cgcttcggcg aaaccgccgt aggccgccgc
       61 cggcgccggc tcgtatggcg cctgccagcc gctccaggcc gtcgcatcca ccggggccgg
      121 cccgcgctgc tgcgagggcc aggatgacgt gggccacgac gacccggcgg cgcggcgcag
      181 ggcctcgagg gtgcgggcgc cgccggtgct ggcggcgcgg aatccggcgc gggcgagcgc
      241 gtccttgatg gcgctgacca ccagcgcccg cacgtgcccg gggtcgcgga agcgcacctc
      301 ggtcttggcc gggtgcacgt tgacgtcgac agcgcggggg tcgcaggcga tcgaaagcgc
      361 caggacaggg tggcggtcgg acgccatcac gtcggcgtag gcgccgcgca cggccgagag
      421 gagaagcttg tcgcgcacgg gcctgccgtt gacgacgaag tgcacgtgcg tcgaggcggc
      481 gcggtggaag gtcggcaggc cgacgtggcc cgagagggcg aagccttcgc gcccgatcga
      541 gaccgggacg gcgttgtcgg tgaagtccgc cccgagcacc cgggcggcgc gggcgaggaa
      601 ccccgcctcg ccctcccctt cgggcgcgaa cacggcgctc gtcagatgct cgccgcccaa
      661 ggaaaagcgg atcgccggat gcgcgatggc gaggcggcgg acgacctccg cgaccgcctg
      721 tgcctcggcg cggtcgctct tcaggaactt gaggcgggcc ggcgtcgcgg cgaaaaggtc
      781 cgtgacctcg acgcgggtgc cgcgcgaggc cgccgcgggc cgcacctcgt ccctgacgcc
      841 cgcctcgacc agcatggccg ccccggtcac cgcatcggcg gtgcgcgtcg tgatcgccag
      901 ccgcgcgacg gcgccgatgg acggcagggc ctcgccgcga aagccgaggg tgccgatgcg
      961 cgacaggtcg ccgtcgggaa gcttcgaggt ggcgtggcgc tcgaccgcga gggcgaggtc
     1021 ctccgggctc atgccgcagc cgtcgtcgac gacgcggatg agctcgcgcc cgcccgcctc
     1081 gacccgcacc tcgatggcgc gcgcgccggc gtcgatggcg ttctcgacaa gctccttcac
     1141 ggccgaggcc ggccgctcga ccacctcgcc ggcggcgatc cggtcgacga ggatcgggtc
     1201 gagccggcgg acgctcatca cccttccgtc aggtactgct tggccagaag cttcgcctcc
     1261 tcgacggcgg gctggtcgaa cgggtcgacg ccaagggcgt agccggtgag gatggtctcg
     1321 agcatgaagt gcatcaggag ttcgccgagg gcgcgctcgt cgagcgcggg cacgtggatc
     1381 tgccgcgtcg ggcagccgtt cttggcgaac gtgtcagcca tggcgcgccc ttgcgcggcg
     1441 acgagatcgc cgacgtgacg gccggcgaac ccgggctcgc cggcgcgccg cgcaagctcg
     1501 gcgtcgatga ccgggccctt gccggcgacg tcgacggtga tgacggtgaa gagcttgtcc
     1561 ttcggcccgg cgaggtagag ctgctgctgc gagtgctggt cgacggggcc gatggcggcc
     1621 acgggttgcg tgcccttgcc gtccttgccg aggctctcgg cccacagctg cacccaccag
     1681 cgcgtcaggc gctcgaggcg gtcggcatag cccatgagca ccgtcacggc cttgccctcg
     1741 aaggcggcgg cggtcgagag cgcggcgcca agcgccgccg gcgcatccgc cgcggcggcg
     1801 ccgtcgcgga tcggcgccca ggcgtcgagc gccccttgac ggaccgcggc gatgtcgagg
     1861 ccgaggaccg cggcgggcag gaggccgaca ttggtgagga cggaatagcg cccgccgacg
     1921 ccggtgtggt ggtcgaggaa gtcgacgccc tccggctcga ggagatcgcg cagcgcgtgg
     1981 cgcccgccct tgcgcggctc ggagaggccc agcatcagat cgcccggccg cgagcgcagc
     2041 cccgctctct cgatcgcgct caagaccgcg atggtctgca tcagggtctc gcccgtgccg
     2101 cccgatttcg agatcgcgac gaagcgcgtc gaggcgagcg gcag
//
LOCUS       DASQWN010000316         3688 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1345944, whole genome shotgun sequence.
ACCESSION   DASQWN010000316 DASQWN010000000
VERSION     DASQWN010000316.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 3688)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3688)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3688
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1345944"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            39..527
                     /locus_tag="VE686_06045"
     CDS             39..527
                     /locus_tag="VE686_06045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008190320.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family winged helix-turn-helix
                     transcriptional regulator"
                     /protein_id="HYY84047.1"
                     /translation="MTATATPQAPIVLERFLPYRLNVLAGVVSSALAQIYEERFGLSI
                     PGWRIVATLGQYGVRTARDIAAHGVMHKSTVSRAVSALEARGLVQRKGNPDDLREELL
                     VLTPAGRAVYDALAPEALAFEARLLAALAPGERKALFEIVERLDRHARTLAHEVEREA
                     AE"
     gene            524..1150
                     /gene="maiA"
                     /locus_tag="VE686_06050"
     CDS             524..1150
                     /gene="maiA"
                     /locus_tag="VE686_06050"
                     /EC_number="5.2.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_026437509.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016034 - maleylacetoacetate isomerase
                     activity [Evidence IEA];
                     GO_process: GO:0006559 - L-phenylalanine catabolic process
                     [Evidence IEA];
                     GO_process: GO:0006572 - tyrosine catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="maleylacetoacetate isomerase"
                     /protein_id="HYY84048.1"
                     /translation="MRLYTYFRSSAAYRVRIALNLKGLAYESVPVNLLKGEHGASAYL
                     AVNAQGRVPSLETDGAVLIQSPAILEYLEEMHPEPPLLPSDPVARARVRAACALIGCD
                     IHPLNNLAVLRYLKGQLGQEQAAIDAWYAHWIVEGFDALEKLIGQGPFAFGRRPTLAD
                     VYLVPQVANARRFKIALDRWPRIAAADAACAVLDPFAAATPERQPDAA"
     gene            1223..1885
                     /locus_tag="VE686_06055"
     CDS             1223..1885
                     /locus_tag="VE686_06055"
                     /inference="COORDINATES: protein motif:HMM:NF012257.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030551 - cyclic nucleotide binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cyclic nucleotide-binding domain-containing
                     protein"
                     /protein_id="HYY84049.1"
                     /translation="MELTPIEVLSYGAAVATLYGYFAKTMVPLRVAAIVANVLFIGYG
                     FGKAFYVTAVLHAVLLPINVKRLRQMLRLTRNVEQAAASGFSMDWLRPFMKARRYEAG
                     EQMFRKGDVSSEAYQLLSGEIELEEIGVRIGPGTFFGEMGLFTTDNRRTVSARCVEPV
                     EVLFITYEEFRQLYFQQPTFGFYVLRLIVQRMEKNLELARQPMAESEVRAPEVGTAAL
                     TK"
     gene            complement(1945..2379)
                     /locus_tag="VE686_06060"
     CDS             complement(1945..2379)
                     /locus_tag="VE686_06060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019400439.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MucR family transcriptional regulator"
                     /protein_id="HYY84050.1"
                     /translation="MDATGANNNLVELAADIVSAYVSNNSVRPADLPELINAVHSALK
                     TTGSQQSQAEAQPLTPAVSIKKSIGQDYIICLDDGKKFKSLKRHLRTKYGMTPEQYRE
                     KWGLPKDYPMVAPAYARARSELAKSMGLGQQRKKSAAKKGRK"
     gene            complement(2536..3354)
                     /locus_tag="VE686_06065"
     CDS             complement(2536..3354)
                     /locus_tag="VE686_06065"
                     /inference="COORDINATES: protein motif:HMM:NF014017.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF72 domain-containing protein"
                     /protein_id="HYY84051.1"
                     /translation="MTSDDHQGSRSARSAIPLAAGAAEAALPRTVVGTAGWTIPTKDA
                     ALFPGAGTHLQRYGAILPGAEINSSFHRPHRRGVYERWAASVPAGFRFAVKMPKTITH
                     ERRLVDVSELLDRFLAEVAGLGTRRGPFLVQLPPSFAFDANAFVAFVAMVRERVPADL
                     VCEPRHASWFTAEADVVLVREQVARVAADPAPVPGADRPGGWRGLAYYRLHGSPRRYY
                     SSYSDEDLHGYAAALRLHVEGASKAWCIFDNTAGGAAASNAETLRQLLGREPAR"
     gene            complement(3351..>3688)
                     /locus_tag="VE686_06070"
     CDS             complement(3351..>3688)
                     /locus_tag="VE686_06070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011159264.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF892 family protein"
                     /protein_id="HYY84052.1"
                     /translation="GQVRRLDDIFRMLQQAPEGVECKAIQGIIAEGDELAEEFKGGEA
                     LDAGLIAAAQAVEHYEITRYGTLLAWAKQLGMDDAAQLLEETLVEEENTDEILSELAE
                     EAINPAAAA"
BASE COUNT          566 a         1235 c         1247 g          640 t
ORIGIN      
        1 gagatattgg ttgcatgagc aacgatcgat tgtcaacgat gaccgcgacc gcgacgccgc
       61 aagcgcccat cgtcctcgag cgcttcctgc cctaccggct caacgtcctc gcgggcgtgg
      121 tctccagcgc cctggcgcag atctacgagg agcgcttcgg cctcagcatt ccgggatggc
      181 gcatcgtcgc cacgctcggc caatacggcg tgcgtacggc ccgcgacatc gccgcccatg
      241 gcgtcatgca caagtcgacg gtttcccgcg ccgtctcggc cctcgaggcg aggggcctcg
      301 tgcagcgcaa gggcaatccc gacgacctgc gcgaggagct cctcgtcctc acgccagcgg
      361 gccgggcggt ctacgacgcg ctcgcacccg aggcgctcgc cttcgaggcg cgcctgctcg
      421 cggcgcttgc gccgggtgag cgcaaggccc tgttcgaaat cgtcgagcgc ctcgaccgcc
      481 atgcccgaac gctggcgcat gaggtcgaga gggaggctgc cgaatgaggc tctacaccta
      541 tttccgctcc tccgccgcct accgcgtgcg catcgccctg aacctcaagg gcctcgccta
      601 cgagagtgtc ccggtgaacc tgctgaaggg cgagcacggc gcgtccgcgt acttggccgt
      661 gaacgcgcag gggcgggtgc cgtcgctgga aacggacggt gccgtcctca tccagtcgcc
      721 ggcgatcctc gagtacctcg aggagatgca tcccgagccg ccgctcctac cgagcgatcc
      781 ggtcgcgcga gcccgcgtgc gggctgcctg cgcgctcatc ggctgcgaca tccacccttt
      841 gaacaacctt gccgtgctgc gctatctcaa gggccagctc gggcaggagc aggcggcgat
      901 cgacgcctgg tacgcccact ggatcgtcga gggcttcgac gccctggaga agctcatcgg
      961 ccagggtccc ttcgcgttcg ggcgccggcc gacgctcgcc gacgtctacc tcgtgccgca
     1021 ggtcgcgaac gcgcgccgct tcaagatcgc cctcgatcgc tggccgagga ttgccgccgc
     1081 ggacgccgct tgcgcggtgc ttgatccctt cgcggccgcc acgcccgagc gccagccgga
     1141 tgcggcctga tcggctctcg gttgcatcgc cccacgtccc gcaggagatt gcagctgtcc
     1201 caaggggccg gaggcgagct gaatggaact gacgcccatc gaagtcctgt cgtatggggc
     1261 cgcggtcgcg acgctctacg gctacttcgc caagacgatg gttccgctgc gcgtcgccgc
     1321 tatcgtcgcg aacgtgctgt tcatcggcta tggattcggc aaggccttct atgtaacggc
     1381 cgtcctgcat gccgtcctgc tgcccatcaa cgtgaagcgc ctgcggcaga tgttgcgcct
     1441 cacgcgcaac gtggagcagg cggccgcgag tggtttctcg atggattggc tgcgcccctt
     1501 catgaaggcg cgccggtacg aggccggcga gcagatgttc cgcaagggcg acgtctcgag
     1561 cgaagcctac cagctgcttt caggcgagat cgagctcgag gagatcgggg tacgcatcgg
     1621 ccctggaacc tttttcggcg agatggggct gttcacgacc gacaaccggc gcacggtctc
     1681 ggcgcgctgc gtggaaccgg tcgaggtcct gttcatcacc tacgaagagt tccgccagct
     1741 ctacttccag cagcccacct tcggcttcta cgtcctgcgg ctcatcgtgc agcggatgga
     1801 gaagaacctg gagctggcgc gccagcccat ggccgagtct gaagtccggg cacctgaggt
     1861 aggaactgcg gcgttgacga aatgagccgc cgcggcaacg cggtagcggc tctcgtccgg
     1921 cgcgggcaga acgtccaggc tgctttactt gcggcccttc ttggccgcgc tcttcttgcg
     1981 ttgctggccg aggcccatgg acttcgcgag ctctgagcgg gcgcgggcat aggccggggc
     2041 gaccatcggg tagtccttcg gcagacccca cttctcgcgg tactgctcgg gggtcatgcc
     2101 gtacttggtg cgcaggtggc gcttcaagct tttgaacttc ttcccgtcgt cgaggcagat
     2161 gatgtaatcc tggccgatcg acttcttgat cgagacggcg ggcgtgagcg gctgggcctc
     2221 ggcctggctc tgctggctgc cggtcgtctt cagcgcgctg tgcaccgcgt tgatcagctc
     2281 ggggagatcg gccggccgga cggaattgtt cgagacatag gcgctgacga tgtcggccgc
     2341 gagctcgacg aggttgttgt tggcgccggt ggcatccatg gctgcgaagt ccttcgtgtt
     2401 gagagcggga cgtgctttgc tatgccgccg atacgcttgt ttgctgaaat ccgcaagtac
     2461 ccgaccagaa atgaagagtg aacaccgccg gtagatgaat gaaatctgtg cagccgcgtc
     2521 ggttttgtgg aaaaatcagc gggcgggctc ccgaccgagc agttgccgca gtgtttcggc
     2581 gttcgatgcg gccgctccgc ccgccgtatt gtcaaagatg caccatgcct tggacgcgcc
     2641 ttccacgtgt aacctcaacg ctgcagcgta gccatgcaga tcctcgtcag aatagctgga
     2701 gtaataccgt cgcggcgatc catggagtcg atagtaggca agcccgcgcc agcctcccgg
     2761 ccggtcggcg cctggaaccg gcgccgggtc ggcggcgacc cgcgcaacct gctcgcgcac
     2821 gaggacgacg tccgcttcgg cggtgaacca actcgcatgc cgcggctcgc acacgaggtc
     2881 cgcggggacg cgctcccgca ccattgcgac gaaagccacg aaggcgttcg cgtcgaacgc
     2941 aaagctcggg ggcagctgca cgagaaacgg gccgcgcctg gttccgagcc cggcgacctc
     3001 cgcgaggaag cggtcgagca gctcggagac gtcgacgagg cgccgctcgt gcgtgatcgt
     3061 cttcggcatc ttcacggcga atcggaagcc cgccgggacg gaggcggccc agcgctcata
     3121 aacgccgcgc cggtggggcc ggtggaagga cgagttgatc tcggccccag gcaggatagc
     3181 gccgtagcgc tgcaggtggg tccctgcgcc ggggaagagc gccgcgtcct tcgtcgggat
     3241 ggtccagccc gcggtgccga cgacggtgcg gggcagggcg gcctcggcgg cgccggcggc
     3301 gagcgggatc gcgctccggg cggagcgcga tccctgatga tcgtcggagg tcaggcggca
     3361 gcggccgggt tgatcgcctc ttcggcgagc tcggacagga tctcgtcggt gttctcctcc
     3421 tcgacgagag tctcctcgag gagctgcgcc gcgtcgtcca tgccgagctg cttcgcccag
     3481 gcgagcagcg tgccgtagcg cgtgatctcg tagtgctcca ccgcctgcgc ggcggcaatc
     3541 aggccggcgt cgagggcctc gccgcccttg aactcctccg cgagctcatc gccctcggcg
     3601 atgatgccct ggatcgcctt gcactcgacg ccttccggtg cctgctgcag catcctgaag
     3661 atgtcgtcga gccgacggac ctggcccc
//
LOCUS       DASQWN010000317         4215 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_56551, whole genome shotgun sequence.
ACCESSION   DASQWN010000317 DASQWN010000000
VERSION     DASQWN010000317.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 4215)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4215)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4215
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_56551"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(127..1002)
                     /locus_tag="VE686_06075"
     CDS             complement(127..1002)
                     /locus_tag="VE686_06075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009030130.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter permease"
                     /protein_id="HYY84053.1"
                     /translation="MATVALRESDTHSPAPSRQRLTPWQVWGLILIAPYVLIFLAFVV
                     YPVGYGLWLARHPVSYEKLLDDPIFFRSVVNTLVFLIVGINVKMSLALLLSGFFVQQR
                     AWIRWVSLLFILPWAVPSIPTILSVRFMLNPEWGLINQLIFKLTAEDGPNWLNDPQLA
                     LAFAILMHIWKSLPFWTLILVAARLSISADLYEAASVDGATSWQKFRFVTWPSMQTVY
                     VTSTILSMIWTLGDFNSVYLLTGGGPADLTHVLATLGIRYLRLDQVDLSMAAIVCAMP
                     LVLPLVYVMMKRLSK"
     gene            complement(1070..2440)
                     /locus_tag="VE686_06080"
     CDS             complement(1070..2440)
                     /locus_tag="VE686_06080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008132246.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HYY84054.1"
                     /translation="MKRFIAGAIAAGLLASASPALAQEKLTVWWVKGFYKSEDDALLE
                     AIKKFEQKSGVKVELSQYAVQDMIPKTVSALDAGTPPDVAYADVYDFQVAAKWAFDGK
                     LEDISDVVTPMKERFAPNTVETAFLYNDKTKKKAYYAFPLKQQTMHIEYWVDMLEQAG
                     FKETDIPKGWKDYWAFWCEKVQPAYRKASGSRAYGIGQPLGVDSSDAYYSFLTFMDAY
                     NVKLVDDDGKLLVDDPKVKQGLIGALTDYTMPYLKGCTPPSSTSWKDPDNNVAFHNKT
                     TVLTHNATISIAAKWLDDINNQTLTQEQRDQAKKNYEQLIRTAGFPDKPDGSKMVYRT
                     AVKVGAIFSESKNKAKAKEFVSFLLEEENLTPYVEGALGRWFPVTKAGQERPFWQADR
                     HRKSVYEQYKAGTVPFEFTKNYKFTVLNNENVWAKAANRVVSEKIPVDKAVDEMIARI
                     KQVAGS"
     gene            2646..3296
                     /locus_tag="VE686_06085"
     CDS             2646..3296
                     /locus_tag="VE686_06085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019400746.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RraA family protein"
                     /protein_id="HYY84055.1"
                     /translation="MPQSLTERLSRCYTGVVHDIMRGMGLRDFTFPPELRPLVSDAPL
                     AGPVFTVLGKVDPKADAHQTLVEWTGLLSRAKPGHIWVSQPNDRVVAHMGELSAETLK
                     NKGVLGCLVDGYVRDVRFLLDMGFQTWSRGYTPRDIVGYWLPAGFDVEITIGDVLVAP
                     GDFVVADLDGAIRIPKDRVEEVVGQAEAAIATESKVRSAILDGVDPQEAYLRFGKF"
     gene            3306..4199
                     /locus_tag="VE686_06090"
     CDS             3306..4199
                     /locus_tag="VE686_06090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018260431.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldose 1-epimerase family protein"
                     /protein_id="HYY84056.1"
                     /translation="MAGKGGSVTLEAGDASAVIAVRGAEPRSWRIGGRELLWHADPSH
                     WDRSAPILFPVVGASAGGTIQVDGVPHPMPQHGFARDSLLDVVERRPEAVRLRLSESP
                     TTRAHYPFAFVLEVTIALEPATLSLAFEVRNVGPQPMPYALGVHPAFPWPFDAASREG
                     HSVEFAAAERAHVPLLTSDGLLQRRTRRLDLQGTQLALTPELFSQGALVFLGAASAAV
                     SFVSPSGARIALAGEGFPHLALWTKPTAPFLSMEAWTGHADWADGGGELRDRPSMRSL
                     AQGAAARHEVRMTYSAGPGGR"
BASE COUNT          683 a         1359 c         1421 g          752 t
ORIGIN      
        1 agaccgggat gccgatgagc agcagcttcg cttcgcgggc gaccgcgcgc atcggcgcgt
       61 gcttccgctc cgcggccggc accggtggag cttggcccgt gggagcgagc gtaggggccg
      121 gggcgctcat ttcgacagcc gtttcatcat cacgtagacg agcgggagca cgagcggcat
      181 ggcgcagacg atcgccgcca tcgacagatc gacctgatcg aggcgcaggt accggatgcc
      241 gagcgtcgcg agcacgtggg tgaggtcggc aggtcccccg ccggtgagga ggtagacgct
      301 gttgaagtcg ccgagcgtcc agatcatcga gaggatggtc gacgtgacat agacggtctg
      361 catcgacggc caggtcacga agcggaactt ctgccacgag gtggcgccgt ccaccgaggc
      421 ggcctcgtag aggtcggccg atatcgatag ccgggcggcg acgaggatga gggtccagaa
      481 cggcagcgat ttccagatgt gcatcaggat cgcgaaggcg agcgccagct gaggatcgtt
      541 gagccaattc ggcccgtcct ccgcggtgag cttgaagatg agctggttga taaggcccca
      601 ctcgggattc agcatgaacc ggaccgacag gatcgtcggg atcgacggca ccgcccaggg
      661 caggatgaag aggagcgaga cccaccggat ccacgcgcgc tgctgtacga agaaccccga
      721 cagcagcagc gccaggctca tcttcacgtt gatgccgacg atcaggaaca ccagcgtgtt
      781 gacgacggag cggaagaaga tcgggtcgtc gagcagcttc tcgtagctga cggggtggcg
      841 cgcgagccac agaccgtagc cgaccgggta gaccacgaag gccaggaaga tcaggacgta
      901 aggggcgatg aggatgaggc cccagacctg ccatggcgtc aagcgctggc gcgacggggc
      961 cggggagtgg gtatcggatt cgcgcagggc aaccgtcgcc atgaaaacag ccttgcgatg
     1021 acaaactgtc cggccgcccc ttcgaggcgg ccggaccaga gcccgttctc taagagcccg
     1081 cgacctgctt gatgcgggcg atcatctcgt cgacggcctt gtcgaccggg atcttctcgc
     1141 tcacgacgcg gttcgcggcc ttggcccaga cgttctcgtt gttgagcacc gtgaacttgt
     1201 agttcttggt gaactcgaac ggcacggtgc cggccttgta ctgctcgtag accgacttgc
     1261 ggtggcggtc agcctgccag aacggccgct cctggccggc cttggtgacc gggaaccacc
     1321 gcccgagcgc gccctcgacg tacggcgtca ggttctcttc ctcgaggagg aagctgacga
     1381 actccttcgc cttcgccttg ttcttcgact cgctgaagat cgcgccgacc ttcacggccg
     1441 tgcggtagac catcttcgag ccgtccggct tgtcggggaa gcccgccgtg cggatcagct
     1501 gttcgtagtt cttcttggcc tggtcgcgct gctcctgcgt cagcgtctgg ttgttgatgt
     1561 cgtcgagcca cttcgctgcg atcgagatcg tcgcgttatg ggtcagcact gtcgtcttgt
     1621 tgtggaaggc gacgttgttg tccgggtcct tccagcttgt ggaggacggc ggcgtgcagc
     1681 ccttcaggta gggcatggtg tagtcggtga gtgcgccgat gaggccttgc ttcaccttgg
     1741 ggtcgtcgac gagcagcttg ccgtcatcat cgacgagctt cacgttgtac gcgtccatga
     1801 aggtcaggaa cgagtagtag gcatcgctcg agtcgacccc gagcggctgc ccgatgccgt
     1861 aggcgcgcga cccggacgcc ttgcggtagg ccggctggac cttctcgcac cagaaggccc
     1921 agtagtcctt ccagcccttc gggatgtcgg tctccttgaa gccggcctgc tcgagcatat
     1981 cgacccagta ctcgatatgc atggtctgct gcttcagcgg gaacgcgtag taggccttct
     2041 tcttggtctt gtcgttgtag aggaacgccg tctcgactgt gttcggggcg aagcgctcct
     2101 tcatcggcgt gacaacgtcc gagatgtcct cgagcttgcc gtcgaaggcc cacttcgccg
     2161 cgacctggaa gtcgtacacg tcggcatagg cgacgtccgg cggggtgccc gcgtctagcg
     2221 ccgacacggt ctttgggatc atgtcctgga cggcgtattg ggacagctcg accttgacgc
     2281 cgctcttctg ctcgaacttc ttgatggctt cgaggagcgc gtcgtcctcc gacttataga
     2341 agcccttcac ccaccagaca gtcagcttct cctgcgcgag cgccgggctc gccgaggcga
     2401 gaaggccggc tgcgatcgcg cctgcaataa aacgtttcat gctgttcctc ccgaaaacgg
     2461 gcgttctggg tccgcctcac ggtgggcggt agcctggggt cattgagcac gaaccaaaag
     2521 cggaatcaat caaggctggc ggacgccgga cggcacatgg gaagcttgac cggtggccag
     2581 agcccgcgct tgcgcatcgc cgcgcggccg tgcttcgtgc acgcatcgga acagagggaa
     2641 acggcatgcc ccaaagcctg accgagcgcc tgtcgcggtg ctacacgggc gtggtccacg
     2701 acatcatgcg cggcatgggt ctgagggact tcacctttcc gcccgagttg cggccgctcg
     2761 tctccgacgc gcctctcgcg ggccctgtgt tcacggtgct cggcaaggtc gatcctaagg
     2821 ccgacgcgca tcagacgctc gtcgaatgga ccgggctgct gtctcgggcg aagcccggcc
     2881 atatttgggt gtcccagccg aacgacaggg tcgtcgcgca catgggtgag ctctcggccg
     2941 agaccttgaa gaacaagggc gtgctcggct gcctcgtcga cggctacgtc cgcgacgtgc
     3001 gcttccttct cgacatgggc ttccagacct ggagccgcgg atacacgccc cgcgacatcg
     3061 tcggctactg gctgccggcc gggttcgacg tggagatcac gatcggcgac gtgctggtcg
     3121 ccccaggcga cttcgtcgtc gccgacctcg acggagcgat ccgcatcccg aaggatcggg
     3181 tcgaggaggt cgtcggccaa gccgaagccg cgatcgccac ggagagcaag gtccggtccg
     3241 cgatcctgga cggagttgac ccgcaggaag cctatctccg cttcgggaaa ttctgattgc
     3301 ccgtgatggc ggggaagggc ggcagcgtca ccctcgaggc gggcgacgcc tcggccgtga
     3361 tcgccgtccg cggtgccgag cctcgctcat ggcggatcgg tgggcgggag ctcctgtggc
     3421 acgcagatcc gtcccattgg gaccgcagcg cgccgatcct gttcccggtc gtcggcgcca
     3481 gcgccggcgg aacgatccag gtcgacggcg tgccgcatcc catgccgcag catggcttcg
     3541 cgcgcgacag cctgttagac gtcgtggagc gccggcccga ggcggtgcgc ttgcgcctga
     3601 gcgagtcgcc cacgacccgt gcgcattacc ccttcgcctt cgtcctcgag gtcaccatcg
     3661 ccctcgagcc ggcaacgctc tccctcgcgt tcgaggtgcg caacgtcggt ccgcagccga
     3721 tgccctacgc gctcggcgtc catccggcct ttccctggcc cttcgacgct gcatctcgcg
     3781 agggccactc ggtggaattc gccgcggcgg aacgcgccca cgtgccgctc ctgacctcgg
     3841 acggcctgct gcaacggcgg acccggcgcc tcgatcttca ggggacgcag cttgcgctga
     3901 cgcccgagct tttcagccag ggtgccctcg tgttcctagg cgccgcgagt gccgccgtca
     3961 gcttcgtgag cccatcgggt gctcggatcg cactcgcggg ggagggattc ccgcacctcg
     4021 ctttgtggac gaagccgacc gcaccattcc tgtccatgga agcctggacc ggccacgccg
     4081 actgggcgga tggcggaggc gagctccgtg accgcccgtc gatgcgctcc ctcgcacaag
     4141 gtgcggcagc acgccacgag gtccgcatga cctatagcgc gggtccgggc gggcgttgac
     4201 gccgccccgg gccgc
//
LOCUS       DASQWN010000318         2418 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_423655, whole genome shotgun sequence.
ACCESSION   DASQWN010000318 DASQWN010000000
VERSION     DASQWN010000318.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2418)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2418)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2418
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_423655"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..701
                     /locus_tag="VE686_06095"
     CDS             <1..701
                     /locus_tag="VE686_06095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012251959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="EAL domain-containing protein"
                     /protein_id="HYY84057.1"
                     /translation="ALARLQHPVKGVLTPGYFGVAFEDPEIAEMVGEAMARQLAADVA
                     AWLSAGYDCGRVALNLSSAEFRQPGLAEAVLVTLAQAGVPTRNFEVEVTETVFLGASS
                     DLVATTLNRFREAGVSIALDDFGTGFASLTHLKQFPVDHIKIDQSFVRGLERDQADRA
                     IVSAVVALGRNLGMRVTAEGVETDQQAVRLRDLGCDAGQGYLFAKPMAGSRVPWLLRV
                     WPTPGLDGASRLIA"
     gene            770..1486
                     /locus_tag="VE686_06100"
     CDS             770..1486
                     /locus_tag="VE686_06100"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY84058.1"
                     /translation="MTKAAPAVGALIVSLSVAVGGAEAKLVRYDIDGQSYSYSTNNHE
                     QTAVARERMAAAKAAADARAKAQAEASANPLVRAFGSQAQRDAAAADARLREVLARNA
                     PQAAPASGQVRRAPPPGEAAKAEPKAPARPTRVARSAVQDPVDTGSLERQTPARAAPE
                     SARAARSVPAAPKVDAIVYDFASGIKTIHMADGSVDEDVFDRDMAASLKRAQPSGGPR
                     VSFVNEGSAASVESPAAAKD"
     gene            complement(1514..1825)
                     /locus_tag="VE686_06105"
     CDS             complement(1514..1825)
                     /locus_tag="VE686_06105"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY84059.1"
                     /translation="MPVDAAGGQPGAERAGTSTGLRLSREGWMDNKRLSIPDLVLASV
                     PRADEIDALLTTIAELRNRLSHARCVLCGNQLGDMESALTADEDLAHRACIIDDATEG
                     L"
     gene            2166..>2418
                     /locus_tag="VE686_06110"
     CDS             2166..>2418
                     /locus_tag="VE686_06110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018646502.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="twin-arginine translocation signal
                     domain-containing protein"
                     /protein_id="HYY84060.1"
                     /translation="MTEMKASQGRKTSRRKFLTGAAVTTAAAVAAPTVAQAQGPISMR
                     WQSTWPSKDIFHEFALDYAKKVNDMTGGDLRIEVLPAGAV"
BASE COUNT          391 a          834 c          842 g          351 t
ORIGIN      
        1 aggcgctggc gcgcttgcag cacccggtga agggcgtgct gacccccggc tacttcggcg
       61 tcgccttcga ggatccggag atcgccgaga tggtcggcga agccatggcg cgacagctgg
      121 cggcggacgt cgcggcgtgg ctttctgccg gctacgactg cggccgggtc gccctgaacc
      181 tgtcctccgc cgagtttcgc cagcccgggc tcgcggaggc ggttctcgtc accctggcgc
      241 aagccggcgt gccgacgcgc aacttcgagg tcgaggtcac cgaaacggtg ttcctgggcg
      301 caagctcgga cctcgtcgcc accacgctca accgcttccg cgaagcgggg gtgagcatcg
      361 ctctcgacga tttcggaacc ggctttgcct cactgacgca cctgaagcaa ttcccggtcg
      421 accacatcaa gatcgaccag agcttcgtgc gggggctcga gcgcgaccaa gccgacaggg
      481 ccatcgtctc ggccgtcgtc gctctcggcc gcaacctcgg tatgcgcgtc acggcggagg
      541 gcgtcgagac cgaccagcag gcggtgcgcc tgcgcgatct gggctgcgac gccggccagg
      601 gctacctgtt cgccaagccg atggcgggct ctcgcgtgcc gtggctcctg cgtgtctggc
      661 cgacaccggg gctcgacggc gcgagcaggc tgatcgcctg agagggagcc cgcctcaact
      721 ctgccgcaat cgactcgtga ttcgcgagtg attgcgggag tgagtgggaa tgacaaaggc
      781 agcgcctgcc gtcggcgcgt tgatcgtgag cctttcagtg gcggtcggcg gggccgaggc
      841 gaagctggtc cgctacgaca tcgacggcca aagctacagc tacagcacca acaatcacga
      901 gcagaccgct gtcgcgcggg agcgcatggc ggcggccaaa gcggcagcgg acgcgcgtgc
      961 caaggcccag gcggaggcgt cggccaaccc gctcgtgcgg gcgttcgggt cgcaggcgca
     1021 gcgggacgcc gctgcggcgg acgcgaggct gcgggaggtc ctcgccagga atgcgcctca
     1081 agccgctccg gccagtggcc aggttcggcg cgctccgccg cccggggagg ccgccaaggc
     1141 ggagcccaaa gcgcccgcgc gaccgacccg ggtggcacgc agcgccgttc aggatccggt
     1201 cgacaccggc tcgctcgagc gccagacgcc ggcgcgggct gcgccggaaa gcgcaagagc
     1261 ggcacgctcc gtcccggcag cgcccaaggt ggacgcgatc gtgtacgact tcgcgtccgg
     1321 catcaaaacg atccacatgg ccgatggcag cgtcgacgag gacgtgttcg atcgggatat
     1381 ggcggcgtcg ctgaagcggg ctcaaccgtc cggcggccct cgcgtcagct tcgtgaatga
     1441 aggctcggcc gcctccgtcg agagtcccgc cgccgccaag gactgagaag agtccgccca
     1501 tcgcggtagc gggtcaaagg ccttccgtcg cgtcgtcgat gatgcaggcc ctgtgggcga
     1561 gatcctcgtc ggcggtgagg gcggactcca tgtcgccgag ctgattgccg cacaggacgc
     1621 accgggcgtg cgagaggcgg ttgcgcaact ccgcgatggt cgtgagaagg gcgtcgatct
     1681 cgtcggcgcg cggcaccgat gcaagcacga ggtcggggat actgaggcgc ttgttgtcca
     1741 tccatccctc ccgcgacagc cggagaccgg tcgatgtccc ggcccgctcc gccccgggtt
     1801 gcccgccggc ggcgtcgacg ggcatgtcag catcctcacc ataggcgttg atgtccagcg
     1861 cgaccgaaag agtgggttaa ccacccgccc tcgccttccg tgctcggcgt ccagacgcgc
     1921 cggcgccagt cacgatcccg cacggcctcc cgcggcgcga cggtcgggac cggcgcgcgc
     1981 agccgctcct agtccaggag agcggcggtg cccaacgccg tctggcccaa gcgcccaaga
     2041 tcgtgttgca tcctcccgtc cattttaatg tcttgcccgt ccaccccttg aaattgcggc
     2101 ccggaacgtc gttagctgcg cgaagcgagg cagcaagccc ttgcaactct taccgggagg
     2161 acgccatgac tgagatgaag gccagccaag gccgcaagac ttcacgccgc aaattcctga
     2221 ccggcgcagc ggttaccacc gccgccgccg tcgccgcgcc gaccgtcgcc caggcccagg
     2281 ggccgatctc gatgcggtgg cagagcacgt ggccgtcgaa ggacatcttc cacgagttcg
     2341 cactcgacta cgccaagaag gtcaacgaca tgacgggtgg cgacctcagg atcgaggtgc
     2401 tgcccgccgg agccgtgg
//
LOCUS       DASQWN010000319         2206 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1048114, whole genome shotgun sequence.
ACCESSION   DASQWN010000319 DASQWN010000000
VERSION     DASQWN010000319.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2206)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2206)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2206
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1048114"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..219
                     /locus_tag="VE686_06115"
     CDS             <1..219
                     /locus_tag="VE686_06115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012334004.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell surface protein"
                     /protein_id="HYY84061.1"
                     /translation="AVKAGYGPTIRADAVKKLVDSVVSFQERSLEIVSEMRSLSTQNS
                     AEIRDAVEDAKRRIARLVAEGKTLPAPG"
     gene            224..1207
                     /locus_tag="VE686_06120"
     CDS             224..1207
                     /locus_tag="VE686_06120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015932820.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6384 family protein"
                     /protein_id="HYY84062.1"
                     /translation="MASTTASTARQVGEHAPRGLDDLMLAMDVVDTLRHQDNLVSREL
                     SADNRDAELMDRLRKIYRGQGIEVPDRILEEGVQALKEQRFVYTPPPPSLGRTIATAW
                     VNRGRVGRLLLTLLLLLGVGWGAYQLGVVRPAQERAAQEQAKAERNRVELTELLPAAL
                     ERGHEDVTREAKVAAAREKADQILADGRAALARRDADGARRAIDELEVLRADLRREYV
                     LRIVSRPGEPTGVWRVPPRNPSGRNYYLIVEPVAPDGRILTVPVTSEEDGRTAPASKW
                     GVRVGDDVAAQVQRDKNDDGIVQRNRLGEKRRGYLEVEYLMPVAGGAILNW"
     gene            1212..>2206
                     /locus_tag="VE686_06125"
     CDS             1212..>2206
                     /locus_tag="VE686_06125"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY84063.1"
                     /translation="MISGRQALARLEQAIRTLREREAQLQQAWHAAAEEAARLRVERT
                     EAFRQLARLKLDALTRNEVDGELDGAERQALALIESRRKALNALGERRQAAEQEVQEA
                     ERRRHGAAETLERALADLDALRKSVEAQARVSPEWTTGRARVDALARMAEQAQSKAVQ
                     AETDREQKRQPYEADPLFMYLWQRKFGSSEYRVGHLTRFMDRLVARAVGYDKARANYS
                     LLNEIPDRLREHAQRIGAELREAQAQLTSVERAALSKAGTEAAETRAADAKAALEEAD
                     RRLHEARSLAAGMDRAYEGSVSANDTPFREAVDVLAAADERQDLKSLYEEALRTPT"
BASE COUNT          381 a          734 c          809 g          282 t
ORIGIN      
        1 gccgtgaagg ccggttacgg cccgacgatc cgcgccgatg ccgtgaagaa gctcgtcgac
       61 tccgtcgtgt cgttccagga gcgctcgctc gagatcgtga gcgagatgcg cagcctctcg
      121 acccagaact cagcggagat ccgcgacgcg gtcgaggacg ccaagcgccg catcgcccgc
      181 ctcgtcgcgg aggggaagac gctgcctgcg cccggctaag ccgatggcca gcaccacggc
      241 ctcgactgcc cgccaggtcg gagagcacgc gccgcgtggg ctcgacgacc tcatgctggc
      301 gatggacgtg gtggacacgc tgcgccacca ggacaacctc gtcagccgtg agctgagcgc
      361 ggacaaccgc gacgccgagc ttatggaccg cctgcgcaag atctaccgag ggcagggcat
      421 cgaggttccc gaccgcatcc tcgaagaggg tgtgcaggcg ctcaaggagc agcggttcgt
      481 ctacacgcct ccgccgccaa gcttgggccg gacgatcgcg accgcgtggg tcaatcgtgg
      541 acgcgtcggg cggttgctcc tgaccctgct gctgttgctc ggcgtcggct ggggcgccta
      601 tcagctcggc gtcgtccgtc cggcgcagga gcgcgccgcc caggagcagg cgaaggcgga
      661 gagaaaccgc gtcgagctca ccgagctgct gccggctgcg ctggagcgag ggcacgagga
      721 cgtgacacgc gaggcgaagg tcgccgcggc gcgcgagaag gccgaccaga tccttgccga
      781 tggccgggcc gctctcgcca gacgggatgc cgacggggcg cggcgcgcca tcgatgagct
      841 cgaggttctg cgcgcggacc tcaggcgcga gtacgtcctc cggatcgtct cgcgcccggg
      901 cgagccgacg ggcgtctggc gcgttccgcc gcgcaaccct tccgggcgga actactacct
      961 catcgtggag ccggttgccc cggacggacg catcctcaca gtgcccgtga cgagcgagga
     1021 ggacggccgc acggcccccg cctccaaatg gggcgtgcgc gtcggcgacg acgtcgccgc
     1081 gcaggttcag cgcgacaaga acgacgacgg tatcgtgcag cgcaatcggc tcggcgagaa
     1141 gcgtcgcggg tatctcgagg tcgagtacct gatgccggtt gccggcggag cgatcctgaa
     1201 ttggtgacgg catgatctcc ggaaggcagg cactcgcacg cctcgagcag gcgatccgga
     1261 ccctgcgcga gcgcgaagcc cagctgcagc aggcgtggca cgctgctgcg gaggaggccg
     1321 cgcggctgcg cgtcgagagg acggaggcct tccggcagct cgcccgcctg aagctcgatg
     1381 ccctgaccag gaacgaagtg gacggagagc tcgacggcgc cgagcgccag gcgctcgccc
     1441 tcatcgagag ccgccgaaaa gcgctcaacg ccctgggcga gaggcgccag gctgccgagc
     1501 aggaggtcca ggaggcggag cgccggcggc atggcgcggc ggagacactg gaacgggctc
     1561 tcgccgatct cgacgcgctc agaaagagcg tcgaggcgca ggcgcgggtc agtcctgagt
     1621 ggacgacggg tcgggcgcgg gtcgatgcgc tcgccagaat ggccgagcag gctcagagca
     1681 aggcggtgca ggcggagacc gaccgcgagc agaagcgcca gccctacgaa gccgacccgc
     1741 tgttcatgta tctctggcag cgaaagttcg gcagctcgga gtacagggtt ggccatctga
     1801 cccgcttcat ggaccgcctc gtcgcccggg ccgtcggcta cgacaaggcg agggccaact
     1861 acagccttct gaacgaaatt ccggaccggc ttcgtgagca cgctcagcgc atcggggccg
     1921 agctgcggga agcacaggcg cagctgacct ccgtcgagcg ggccgccctc tcgaaggctg
     1981 gcaccgaggc ggcggagacg cgagccgccg acgcgaaggc agcattagag gaggccgacc
     2041 ggcgtctgca tgaggcgcgc agtctcgcgg ccggcatgga ccgggcctac gagggttccg
     2101 tatcggccaa cgacactcct ttccgagagg cggtcgacgt gctggcggct gccgacgagc
     2161 ggcaggatct caaatcgctc tacgaggagg cgcttcggac gccgac
//
LOCUS       DASQWN010000320         2920 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1048229, whole genome shotgun sequence.
ACCESSION   DASQWN010000320 DASQWN010000000
VERSION     DASQWN010000320.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2920)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2920)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2920
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1048229"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            1..903
                     /locus_tag="VE686_06130"
                     /pseudo
     CDS             1..903
                     /locus_tag="VE686_06130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012456189.1"
                     /note="frameshifted; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004812 - aminoacyl-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0043039 - tRNA aminoacylation [Evidence
                     IEA]"
                     /pseudo
                     /codon_start=2
                     /transl_table=11
                     /product="amino acid--tRNA ligase-related protein"
     gene            920..1840
                     /locus_tag="VE686_06135"
     CDS             920..1840
                     /locus_tag="VE686_06135"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012317510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HYY84064.1"
                     /translation="MSPPAHPVVAIVVTHDSAEVLPACLDALGRAGVPVLVVDNASED
                     ASADLAEAHRAAVVRNAANEGYGRANNVGARAAASEFLLVVNPDVAVEQKAVEELVAA
                     ARRYPDAGLFAPRIVEPDGRVFYQATSLLAAQLTNPGGRLAVPEGDACAPFFSGACFL
                     VRRELFLALGGFDEAIFLFYEDDDLCRRIVDAGAALVYVPSAKAHHRRGRSTRRAPGR
                     IFNARWHQAWSRAYVSRKYGLPNPAPSMFLLNAVKATAACLTLQRGVIERYAGSAAGA
                     LAWLTGGTALQRQGLGGHASRGLPAALPPA"
     gene            1861..2517
                     /locus_tag="VE686_06140"
     CDS             1861..2517
                     /locus_tag="VE686_06140"
                     /inference="COORDINATES: protein motif:HMM:NF024880.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
                     /protein_id="HYY84065.1"
                     /translation="MAPRSQDRYFATARTEVLPWLPERVTRMLDVGCGAGATTAAVRA
                     VREVVWAGGIEYVEAVAEQARSVCDIVWTGDAALAPIESEIAPGSLDLVLCLDVLEHM
                     ADPWTMVRRLSALIAPGGRLIVSVPNIRHWKFVWRLLARGDFQYRDAGLLDRTHLRFF
                     VRKTAVELATCGGLVLVTATSAQRWRLPDARWLLSRVSGGKLDEVVAKQWLVVAERRG
                     "
     gene            2570..>2920
                     /locus_tag="VE686_06145"
     CDS             2570..>2920
                     /locus_tag="VE686_06145"
                     /EC_number="1.1.1.40"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012605808.1"
                     /note="NADP-dependent; catalyzes the oxidative
                     decarboxylation of malate to form pyruvate; decarboxylates
                     oxaloacetate; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADP-dependent malic enzyme"
                     /protein_id="HYY84066.1"
                     /translation="MAEKSNGDISQDLKSSALFYHRNPRPGKLEIQATKPLGNQRDLA
                     LAYSPGVAAACEAIAADPDEAATLTTRQNLVAVVSNGTAVLGLGDIGPLASKPVMEGK
                     AVLFKKFAGIDVFDI"
BASE COUNT          437 a         1014 c         1011 g          458 t
ORIGIN      
        1 caccgaggag ttcggcgacg acgcggtcga gttcaaggca ttcaagggcg ttatcaaggc
       61 gggcggcgtg gtgcgggcga tcccggcgac cggcgcggcc tcccagcccc gctcgttctt
      121 cgacaagctc aacgactggg cccgctccga aggggcgccg ggtctcggct acgtggtgtt
      181 cgaggacgag ggcgggcagc tcaccggcaa gggcccgatc gcgaagttca tccccgccgc
      241 gatccaggcg cgcatcgccg agaaggcggg gttgaaagcc ggcgacgcgg tgttcttctc
      301 ggccggcaac gaagagaaag cggccgccct tgccggcaag gcgcgcgtgc gcatcggtga
      361 cgagctcggc atcggagaca aggaccagtt cgccttcgcg tggatcaccg acttcccgat
      421 gtacgagtgg aacgaggacg agaagaagct cgatttctcg cacaacccgt tctcggcgcc
      481 gaacatggac cacgacgcct tcatggcgct cgatccgtcg gacaaggagc gcatcctcgg
      541 catcaaggcc ttccagtacg acatggtctg caacggctac gagctcgcct cggggagcgt
      601 ccgcaaccat cggccggacc ggatggtgaa ggccttcaga tcgccggcta cggcgagaag
      661 gaggtgctcg agcgcttcgg cggcatgtat cgcgccttcc agtacggcgc gccgccgcat
      721 ggcggcatgg cagccggcgt cgaccgcatc gtcatgctgc tctgcggcgc cgtgaacctg
      781 cgcgaggtga cgctgttccc gatgaatcag cgcgccgagg acctgcttct cggcgcgccg
      841 tcggaggtca cgccgaagca gctgcgcgag ctccacatcc gcctgaacct gccggagaaa
      901 tgacggggtc ggaggccgcg tgagcccgcc cgcgcacccc gtcgtcgcca tcgtcgtgac
      961 gcacgacagc gcggaggtcc tgcccgcctg cctcgacgcg ctcggcaggg caggggtccc
     1021 ggtccttgtg gtcgacaatg cttctgagga cgcatccgcg gatcttgccg aggcgcaccg
     1081 cgccgcggtg gtccgcaacg ccgcgaacga gggatatggc cgcgccaaca acgtgggcgc
     1141 ccgggcggcg gcctcggagt tcctgctggt cgtcaacccg gatgtggctg tggagcagaa
     1201 ggcggtcgag gagctcgttg cggcggcgcg ccgctacccc gatgccggcc tgttcgcgcc
     1261 gcgcatcgtc gagccggacg ggcgcgtgtt ctaccaggcc acctcgctcc tcgccgcgca
     1321 gctcacgaac ccgggcggtc ggctcgccgt gccggagggc gacgcctgcg cgccgttctt
     1381 ctccggcgcc tgcttcctcg tgcgccgcga gctgttcctg gcgctcggcg gcttcgacga
     1441 ggcgatcttc ctcttctacg aggacgacga cctgtgccgg cggatcgtcg atgcgggagc
     1501 ggcgctggtc tacgtgccgt cggccaaggc gcatcaccgt cgcggtcgct cgacgaggcg
     1561 ggcccctggg cgcatcttca atgcgcgatg gcatcaagcc tggtcgcgtg cctacgtcag
     1621 ccgcaagtac ggcctgccga atccggcgcc atcgatgttt ctcctgaacg cggtgaaagc
     1681 cacggcggcc tgcctgactt tgcagcgtgg cgtgatcgag cgctacgccg gctccgcggc
     1741 aggtgcgctc gcgtggctga ccggcggcac cgcgctccaa aggcagggcc ttggcggcca
     1801 tgcctcgagg gggcttcccg ccgctttgcc gcccgcatga agcctgttac ggcaggcaca
     1861 atggcacccc gatcgcagga tcgctacttc gccaccgcgc ggacggaggt cctgccgtgg
     1921 ctgcctgagc gcgtcacgcg catgctcgac gtcggctgcg gcgcgggcgc cacgacggcg
     1981 gccgtccgcg ccgtccgcga ggtcgtctgg gccggcggca tcgagtacgt cgaggccgtt
     2041 gccgaacagg cgaggagcgt gtgcgacatc gtctggacgg gcgacgcggc gcttgccccg
     2101 atcgagagcg aaattgctcc aggctccctc gacctcgtgc tctgcctcga cgtcctcgag
     2161 cacatggccg atccgtggac catggtgcgc cggctctcgg cgctgatcgc tcccggcggc
     2221 cggctcatcg tttccgtccc caacatacgg cactggaaat tcgtctggcg gctcctggcg
     2281 cgcggggact tccagtatcg cgacgccggc ctgctcgacc gcactcacct gcgcttcttc
     2341 gtgcgcaaga cggcggtcga actcgcgacc tgcggcgggc tcgtgctcgt gaccgccacc
     2401 tcggcgcagc gctggcgcct tcccgatgcg cggtggttgc tgtcgcgcgt ctcgggaggc
     2461 aagctcgacg aagtcgtcgc caagcaatgg ctggtggtag ccgagcggcg cgggtgaggc
     2521 gagccttcgc acccgtgtgc agcaagtaga accgagtcga ggacgtcaca tggctgagaa
     2581 gagcaacggc gacatctcgc aggacctcaa gtccagcgcg ctgttctacc accgcaatcc
     2641 gcggcccggg aagctcgaga tccaggcgac caagccgctc ggcaaccagc gcgatctcgc
     2701 gctcgcctac tcgccgggcg tcgccgccgc ctgcgaggcc atcgcggccg acccggacga
     2761 ggccgcgacg ctgacgacgc gccagaacct cgtcgccgtg gtctcgaacg gcaccgcggt
     2821 gctcggcctc ggcgacatcg gcccgctcgc ctcgaagccg gtcatggagg gtaaggccgt
     2881 cctgttcaag aaattcgccg gtatcgacgt tttcgatatc
//
LOCUS       DASQWN010000321         2890 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1048435, whole genome shotgun sequence.
ACCESSION   DASQWN010000321 DASQWN010000000
VERSION     DASQWN010000321.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2890)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2890)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2890
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1048435"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..595)
                     /locus_tag="VE686_06150"
     CDS             complement(<1..595)
                     /locus_tag="VE686_06150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015928999.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PQQ-binding-like beta-propeller repeat protein"
                     /protein_id="HYY84067.1"
                     /translation="MPSAPLPVPPASAAPPENGQWTMPAKNYAATRYSELDEITADNV
                     KNLQPAFTFSTGVNRGQEAAPLVVGSTMYVLSPYPNILYALDLTKPGAALKWQYNPKP
                     EAASQGVACCDVVNRGPVFSDGKIFYNTLDGNVVAVDAEKGTEVWKTKVGDINMGETM
                     TMAPLVVKGKVLVGNSGGEYGVRGWLKALDASNGKVQW"
     gene            complement(796..1602)
                     /locus_tag="VE686_06155"
     CDS             complement(796..1602)
                     /locus_tag="VE686_06155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006609631.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HYY84068.1"
                     /translation="MTAAHYARAMSGILRRELLRTLGQHGRLAAALVRPMIWLAVFAA
                     GFRAVLGLSVTPPYQTYVLYEVYIVPGLVGMMLLFHGMQTSLSMVYDREMGSMRTLLI
                     APLPRWYLLGARLLANVVVALPLVYAFLVLARLWDVRPPSMGYVAVLPALVLAGLMLG
                     ALGLFISSFVRQLENFAGVMNFVIFPLFFASTALYPLWRLEDASPALALLAQANPFTH
                     AVELVRFALYLRFEPTALAVTAAAAVAFFAGALFGYDPGGGFWGRRGGDA"
     gene            complement(1599..2324)
                     /locus_tag="VE686_06160"
     CDS             complement(1599..2324)
                     /locus_tag="VE686_06160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012029055.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HYY84069.1"
                     /translation="MTALAVEGLSHAFRGREALRDVSFTVEPGAFTVLLGLNGAGKTT
                     LVSLVTGLYHARSGDIRVFGRSLRREPLAALSRMGVVFQAPSLDLDLTVAENLRYHAA
                     LHGLSAADTRARAEEELGRLGMLDRAGDKARALSGGLRRRVEIARALLHRPQLLLCDE
                     ATVGLDAAMRRDMLAHVRALCRERGLSVVWATHLIDEVDAADATIVLHRGAVLWSGAA
                     GELPRHAGAATVSEAFLAMTTTP"
     gene            complement(2321..>2890)
                     /locus_tag="VE686_06165"
     CDS             complement(2321..>2890)
                     /locus_tag="VE686_06165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013895460.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-propeller fold lactonase family protein"
                     /protein_id="HYY84070.1"
                     /translation="PVGVEPEGIAVTPDGRFVVCTSETTSMVHIVDAATLELKDNVLV
                     DTRPRDAVVSPDGKRIFVSSELRGTVTALDAETRQVIGKVGFSVPGVSRELVQAVGLA
                     MTRDGSRLYVALGPANRVAEVDAATLKVLRMYLVGQRVWGIALSPDGKRLYAANGNSS
                     DVSIIDLERQEVVKSIGVGRLPWGVVVGP"
BASE COUNT          489 a          976 c         1034 g          391 t
ORIGIN      
        1 tccactgcac cttgccgttc gaggcgtcga gcgccttgag ccagccgcgg acaccgtatt
       61 cgccgcccga gttgccgacg aggaccttcc ctttcaccac gaggggcgcc atcgtcatgg
      121 tctcgcccat gttgatgtcg ccgaccttgg tcttccagac ctcggttccc ttctcggcgt
      181 cgaccgcgac gacattcccg tcgagggtgt tgtagaagat cttgccgtcc gagaagacag
      241 gcccgcggtt caccacgtcg cagcaggcca cgccctgtga ggccgcctcg ggcttcgggt
      301 tgtactgcca cttcagcgcg gccccgggct tcgtcaggtc gagcgcgtag aggatgttgg
      361 ggtacggcga gagcacgtac atggtgctcc cgacgacgag gggcgccgcc tcctggccgc
      421 ggttcacgcc agtcgagaag gtgaaggccg gctgcaggtt cttgacgttg tcggccgtga
      481 tctcgtcgag ctcgctgtag cgagtcgctg cgtagttctt cgccggcatg gtccattgcc
      541 cgttctcggg cggggccgcg gaggcgggcg ggacgggaag aggagccgag ggcatggggg
      601 ccgtcgcggg cggcacctgt gcggcagcgg gcacgccgaa cgcaagcacc acagcggtca
      661 ggaggctggc cagtggcggg acgggacgga cgcaacgcac catggcttcg cggaccattg
      721 ttcttgtcgc cgagacccgc ctcggccaag cttaacgcct tgccgctgcg caatgttcca
      781 gagttcctgg cgggctcaag cgtcgccgcc gcgccggccc cagaagcccc cgccggggtc
      841 gtagccgaaa agggccccgg cgaagaatgc gacagcggcc gcagccgtga cggcgagcgc
      901 tgtcggctcg aaccgcaggt atagggcgaa gcggacaagc tcgacggcgt gggtgaacgg
      961 attcgcctgc gcgaggagag ccagcgcggg gctcgcatcc tcgaggcgcc acagcggata
     1021 gagcgcggtc gaggcgaaga agagggggaa gatgacgaag ttcatcacgc cggcgaagtt
     1081 ctcgagctgg cgcacgaagg acgagatgaa gagcccgagc gccccgagca tcagccctgc
     1141 cagaacgagg gccgggagca ctgcgacgta gcccatgctc ggcgggcgaa cgtcccagag
     1201 ccgcgccagg acaaggaacg cgtaaacgag cgggagagcc acgacgacat tggccaggag
     1261 gcgcgcaccc aggaggtacc atcgcggcag tggggcgatc aggagggtgc gcatggaccc
     1321 catctcccgg tcgtagacca tggagagcga cgtctgcatg ccgtggaaca ggagcatcat
     1381 gccgacgagg ccggggacga tgtagacctc gtacagcaca taggtttggt agggcggcgt
     1441 aaccgagagc ccgaggacgg cccggaatcc ggcggcgaag acggcaagcc agatcatggg
     1501 gcgcaccagc gcggcggcga ggcggccgtg ctgcccgagc gtgcgcagga gctcgcgacg
     1561 caggatgccg gacatggccc gggcgtagtg ggctgccgtc atggcgtcgt cgtcatggcg
     1621 aggaaggcct cggagacggt cgccgccccg gcatgccggg gaagctcgcc cgcggccccg
     1681 ctccacaaga cggcgccgcg gtgcaggacg atcgtcgcgt ccgcagcgtc gacctcgtcg
     1741 atgaggtgcg tggcccagac gaccgacagc ccacgctcgc ggcacagggc ccgcacgtgc
     1801 gcgagcatgt cccggcgcat ggcggcatcg aggcccaccg tcgcctcgtc gcacaagaga
     1861 agctggggcc ggtgcagcag cgcccgggcg atctcgacgc gccggcgcaa gccgcccgag
     1921 agcgcgcgtg ccttgtcgcc ggcgcggtcg agcatgccaa gccgcccgag ttcctcttcg
     1981 gcgcgggccc tcgtgtcggc agctgacagg ccgtgcaggg cggcgtggta gcgcaggttc
     2041 tcggcgaccg tcaggtcgag gtcgaggctc ggcgcctgga acaccactcc catgcgtgaa
     2101 agcgccgcga gaggctcgcg gcgcagcgaa cggccgaaga cccggatgtc gcccgaacgc
     2161 gcatggtaga gccccgtcac cagggacacg agcgtcgtct tgccggcgcc gttgagcccg
     2221 agcagcaccg tgaaggcgcc gggctcgacc gtgaaggata catcgcgcaa cgcctcccgc
     2281 ccgcggaatg cgtggctcag gccctcgacg gcgagcgccg tcacgggccg acgaccacgc
     2341 cccagggcag gcgtccgacg ccgatcgact tcaccacctc ctggcgctca agatcgatga
     2401 tcgagacgtc gctcgagttg ccgttggccg catacaggcg cttgccgtcc ggcgacagcg
     2461 cgatgcccca gacacgctgg ccgacgagat acatgcgcag caccttgagg gtcgcggcgt
     2521 cgacctcggc gacgcggttc gccggcccga gcgccacgta gaggcggctc ccgtcccgcg
     2581 tcattgcaag ccccacggcc tgcacgagct cgcgcgagac ccccggcacc gagaagccga
     2641 ccttgccgat cacctggcgc gtctcggcat cgagcgccgt cacggtccca cgcagctcgg
     2701 acgacacgaa gatccgcttt ccgtcgggcg agaccacggc atcgcgcggc cgggtgtcca
     2761 ccagcacgtt gtccttgagt tcgagggttg ccgcatcgac gatgtggacc atgctcgtcg
     2821 tctccgaggt gcacacgacg aagcgcccgt ccggggtcac tgcgatgcct tcgggctcga
     2881 cgcccaccgg
//
LOCUS       DASQWN010000322         5170 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_325054, whole genome shotgun sequence.
ACCESSION   DASQWN010000322 DASQWN010000000
VERSION     DASQWN010000322.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 5170)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5170)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5170
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_325054"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..826)
                     /locus_tag="VE686_06170"
     CDS             complement(<1..826)
                     /locus_tag="VE686_06170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011441385.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein adenylyltransferase SelO family protein"
                     /protein_id="HYY84071.1"
                     /translation="MTVHFPFDNSYARLPDRFFARVEPTAVAAPRLIKLNRQLAADLR
                     LDADWLASPEGTEILAGKRVPEEAEPIAIAYAGHQFGNFVPQLGDGRAILLGEVLDRD
                     GVRRDIQLKGSGPTPFSRRGDGRAALGPVLREYVVSEAMAALGIPTTRALAAVTTGET
                     VIREELLPGAVLTGVASSHIRVGTFQFFAARGDVEGLRVLADHVIARHYPDAADGEHP
                     YRALLQRVVARQADLVAQWLLVGFIHGVMNTDNMSVAGETIDYGPCAFMDAYDPATV"
     gene            1024..2628
                     /locus_tag="VE686_06175"
     CDS             1024..2628
                     /locus_tag="VE686_06175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009464630.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HYY84072.1"
                     /translation="MSANRLAFAAALCAATLFTTLGADARPVRWARSGDALTLDPHAQ
                     NEGPTHALNHHIYEPLVIRDQKGAIVPALATSWKVLESDKTVWEFKIRQGVKFHNGNA
                     FNADDVVFSLQRAMAPTSDMKGLLTSVESVTKVDEATVHVKTKGPNPLLVANLTNTFI
                     MDKEWSEANNTTKPQDFKNKDENFAVRNANGTGPFVLVSREPDVRTVMRRNDAYWGKG
                     ADVPLEISELIYTPIKSDATRVAALLSGEVDFVQDVPVQDIERLKGTPNLRVTAGPEN
                     RTIFFGMDVGSKDLKTDNVEGKNPLADKKVRQAMNMAVNRAAIQRVVMRGQSVPTGVI
                     MPPFVNGWTPELDKAPAPEVNRAKAMLAEAGYPNGFQLTLHCPNDRYINDEGICQATV
                     GMLGQIGIKVNLVSQSKTLHFPLVQKNPPETEFFLIGWGVPTFDSEYIFSFLFHTRDA
                     KYGSWNALRLSDGDLDKKIESLSSETDTAKRNAAIAEIWKKVQDETYYIPVHHQMLAY
                     GMKNNLDIPVDPENQPKLKYVSFKAM"
     gene            2766..3737
                     /locus_tag="VE686_06180"
     CDS             2766..3737
                     /locus_tag="VE686_06180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007689539.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HYY84073.1"
                     /translation="MVAYVLRSVLQGAVVLIVVAFIAFAMFRFVGDPIANMVGQEASM
                     ADREELTRQLGLDQPFPVQFLEFLAAAVRGEFGISYRQGRPVSALIAERLPATVELAV
                     LSAVFATCVGVALGVYAAIRRRGLMAQAVMMLSLVGVSLPTFLIGIGLIYVFAVELRW
                     LPSFGRGDTVAIGWWTTGLLTKSGLQSLVLPVLTLGFFQLTLIMRLVRAEMLDVLRSD
                     FVRFARARGIPDRVIEFRHALRNTMIPVVTIAGLQLGSVVAFAIVTETVFQWPGLGAL
                     FVNAVQFADVPVMSAYLVFVAFVFVVVNLVTDLVYVALDPRLRAGGR"
     gene            3737..4702
                     /locus_tag="VE686_06185"
                     /pseudo
     CDS             3737..4702
                     /locus_tag="VE686_06185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012043004.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
     gene            complement(4826..>5170)
                     /locus_tag="VE686_06190"
     CDS             complement(4826..>5170)
                     /locus_tag="VE686_06190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006023384.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="kelch repeat-containing protein"
                     /protein_id="HYY84074.1"
                     /translation="VDTFHTNSNLHHSYDPRTDQWTFRAPIPTARSGHGTVWYRDRIF
                     VMGGEGTNRVYGQNESYDPATDRWESHAPMLTPRHGMGAVVVGDAAYVAGGGPQMGGG
                     VKSAINEAFRLS"
BASE COUNT          822 a         1732 c         1710 g          906 t
ORIGIN      
        1 acaccgtcgc agggtcgtag gcgtccatga aggcgcatgg gccgtagtcg atggtctcgc
       61 cggccaccga catgttgtcg gtgttcatga cgccgtgaat gaacccgacc aggagccatt
      121 gcgccaccag gtccgcctgg cgggcgacga cccgttgcag gagcgcacgg tacgggtgct
      181 cgccgtccgc ggcatcggga tagtgccgcg ctatgacgtg gtccgcgagg acgcgcaggc
      241 cctcgacgtc gccgcgggca gcgaagaact ggaaggtgcc gacgcggatg tggctcgagg
      301 ccaccccggt caggaccgcg cccggaagaa gctcctcgcg gatgaccgtc tctcccgtgg
      361 tcacggccgc gagcgcgcgg gtggtcggga tgccgagcgc cgccatagcc tcgctgacca
      421 cgtactcgcg caagaccggc ccaagggccg cacgtccgtc accgcggcgg gaaaacggcg
      481 tcgggcccga ccctttcagc tggatgtcgc ggcggacgcc atcccggtcc aggacttctc
      541 cgagcaggat ggcgcgcccg tcgccgagct gcggcacgaa gtttccgaac tgatggcccg
      601 catacgcgat ggcgatcggt tccgcctcct cgggcacgcg cttgccggcg agaatctcag
      661 taccttcggg gctcgcgagc caatccgcat cgaggcgcag gtccgcggcg agctgccggt
      721 tcagcttgat cagccttggc gcagccacgg cggtcggctc gacccgcgcg aagaagcggt
      781 ccggcagccg ggcataggaa ttgtcgaacg gaaagtggac ggtcatcgcg ggctccagcg
      841 cgccaggata atccggtaga aatggaggtc gttcccgctc cgcgaaaggg ttgcgcagcc
      901 ggcacatggc cgtgagtttg gtggagccga cccgatgaca gccgcgcggg gcggccctat
      961 gctgccccag gtggcgccgg gttgcggacg atccacaggt cgacacgaga gaggaccacg
     1021 cacatgtcag ccaaccgcct ggcgtttgcc gccgccctct gcgcggcgac gttgttcacg
     1081 acccttggtg ccgatgcgcg ccccgtgcgc tgggcccggt cgggcgacgc tctcacgctc
     1141 gatccacacg cccagaacga gggcccgacg cacgccctta accatcacat ctatgagccg
     1201 ctggtaatcc gggatcagaa gggcgcgatc gtcccggctc ttgcaacctc gtggaaggtg
     1261 ctcgagagcg acaagacggt ctgggaattc aagatccgcc agggggtcaa attccacaac
     1321 ggcaacgcct tcaacgccga cgacgtggtg ttctcgctcc agcgggccat ggcgcccacg
     1381 tccgacatga agggccttct gacctccgtc gagagcgtga ccaaggtcga tgaggcaacc
     1441 gtccacgtaa agaccaaggg ccccaatccg ctgctcgtcg cgaacctgac gaacacgttc
     1501 atcatggaca aggagtggtc cgaggcgaac aacacgacga agccgcagga cttcaagaac
     1561 aaggacgaga acttcgcggt ccgcaacgcg aatggcaccg ggccctttgt gctcgtcagc
     1621 cgggagcctg acgtgcgaac cgtgatgcgg cgcaacgacg cctattgggg caagggcgcc
     1681 gacgtgccgc tcgagatatc ggagctgatc tacacgccca tcaagtcgga cgcgacccgc
     1741 gtcgcggcgc tcctctcggg cgaggtggac ttcgtgcagg acgtgccggt gcaggacatc
     1801 gagcggctca agggcacgcc caacctgcgc gtcaccgccg gacctgagaa ccggaccatc
     1861 ttcttcggca tggacgtcgg ctcgaaggac ctgaagaccg acaacgtcga gggcaagaat
     1921 ccgctcgccg acaagaaggt tcgccaggcc atgaacatgg cggtgaaccg cgccgcgatc
     1981 cagcgggtcg tgatgcgggg ccagtcggtg ccgaccggcg tgatcatgcc gccgttcgtc
     2041 aacggctgga cgccagagct cgacaaagcg ccggctccgg aggtcaaccg ggcgaaagcg
     2101 atgcttgcag aggcgggata cccgaacggc ttccagctga cgctgcactg ccctaacgac
     2161 cgctatatca acgacgaggg catctgccag gcgacggtcg gcatgctggg ccagatcggc
     2221 atcaaggtga acctggtatc ccagtcgaaa actctgcact tcccgctcgt ccagaagaat
     2281 ccacccgaga cggagttctt cctcatcggc tggggcgtcc cgacgttcga ctcggagtac
     2341 atcttctcct tcctgttcca cacccgcgac gcgaagtacg gtagctggaa cgcgctccgg
     2401 ctctccgacg gcgatctcga caagaagatc gagagcttgt cgtccgagac cgacacggcg
     2461 aagcgcaacg cggcgatcgc cgaaatttgg aagaaggttc aggacgagac ctactacatc
     2521 cccgtccacc accagatgct tgcctacggg atgaagaaca atctcgacat tcccgtcgac
     2581 ccggagaacc agccgaagct caagtacgtc tccttcaagg cgatgtgacg ggtgcggcga
     2641 gacgctcggt cgcgcgaggc gccgggcggg cggttcgctt tcggaggaac tgtggacccc
     2701 ctcatgcctg acatgaccgg cgacgccgcg gctgccgtgg cgccgggagc ggccgtgcgg
     2761 tcctgatggt cgcgtacgtt ttgcgtagcg tcctgcaggg cgcagtggtg ctgatcgtgg
     2821 tggcgttcat cgccttcgcg atgttccgct tcgtcggcga ccccatcgcc aatatggtgg
     2881 ggcaggaagc cagcatggcc gatcgcgagg agctgacgcg gcagctcggt ctcgatcagc
     2941 cgtttcctgt ccaattcctc gagttcctcg ctgctgccgt gcgcggagag ttcggcatct
     3001 cgtaccgcca gggaaggccc gtgtcggcgc tgatcgcgga gcggctgcca gcgacggtcg
     3061 agctcgccgt cctatccgcc gtgttcgcga cgtgtgtcgg cgtggcgctt ggcgtctacg
     3121 cggcgatccg gcgccgcggc ctcatggccc aggcagtgat gatgctgtcg ctcgtcggcg
     3181 tgtccctgcc gaccttcctg atcggcatcg ggctgatcta cgtcttcgcg gtggagctgc
     3241 gttggttgcc ttcgttcggc cgcggcgaca cggttgcgat cggctggtgg acaacagggc
     3301 tcctgacgaa gtcgggcctg cagtctctcg tgcttcccgt gctgacgctc ggcttcttcc
     3361 agctcacgct gatcatgcgc ctggtgcggg ccgagatgct cgacgtcctg cgctcggatt
     3421 tcgtccgctt cgcccgagcg cgcggtattc cggaccgggt gattgagttt cgccatgcac
     3481 tgcgcaacac catgataccg gtggtgacga tcgccgggct gcagctcggg tccgtcgtcg
     3541 ccttcgcgat cgtgaccgag accgtgttcc agtggcccgg cctcggcgcg ctgttcgtca
     3601 acgccgtgca gttcgccgac gtgccggtca tgtcggccta cctggtgttc gtcgccttcg
     3661 tcttcgtcgt cgtcaacctc gtcacggatc tcgtctacgt cgccctcgac ccgcgcttgc
     3721 gcgcaggggg ccggtgatgg ccgaaagcct gcagcccgga cccgcgagcc tgaaggtgcc
     3781 gccgacgccc ggacggctcg cccgggcctg ggattccgac gtgctgtggc gcttccggca
     3841 ctcgcccgcg gccctcgtct ccgccgtcgt cgccctcgtc atcgtcgtcg ccgcagtcct
     3901 ggcgccctgg cttgcgccgc aaaacccgtt cgacccggcg cagctcgacc tctaggacgg
     3961 tttctcccgc cccatggagg cgaacgagat cacgggacgc gtgttcgtcc tcggcacgga
     4021 cccgcagggg cgggacatgc tgtccgcagt cctctacggc ggccgcgtct ctctcctcgt
     4081 aggcttcgcc tcggtcgtgt tctcgatggt ggtgggggtg gcactggggc tggcggccgg
     4141 ctacctcggc ggtcgcaccg aggcgctgat catgcgcatc gccgacatcc agctgtcctt
     4201 cccggccatc ctggtggcgc tgctggtctt cggcatcttc cggggcatcg tctcgcccgc
     4261 ccagcaggag caggcgacgc ttttcgtgct catactggcg atcggcctgt cgaactgggc
     4321 gcagtacgcc cggaccgtgc gtgccaccgc catggtcgag aagagcaagg tctacgtgga
     4381 cgcggcgcgg ctcatcggcc ttcgccccct cgtcgtgatg acgaagcacg tgctgcccaa
     4441 cgtcaccggg ccggtcttcg tcatcgcgac catcaatctc gcgctcgcca tcatcgagga
     4501 ggcgacgctc tcgttcctcg gtgtcggcat gccgccgacg cagccgtcac ttggaaccct
     4561 gatccgcatc ggccagcagt tcctgttttc cggagagtgg tggatcctcc tctcgccggc
     4621 gctcgcgctc atcgtccttg ccctcgccat caacctcctc ggagactggc tccgggacgt
     4681 gctggatccg cggctgcgtt agcgccctgc accgtcttca tgacggagcc tcgccagagg
     4741 gagctttcat gatgatggcg cgattgcgcg cgccatgttc atgatggagg ccccatgctc
     4801 atgatggaag gtggtgcatt caggctcagc tcagcctgaa cgcctcgttg atggcgctct
     4861 tgaccccgcc gcccatctgc ggccctccgc cggcgacgta ggccgcgtcg ccgaccacca
     4921 cggcccccat gccgtgccgg ggcgtgagca tcggcgcgtg gctctcccaa cggtcggtgg
     4981 cgggatcgta ggattcgttc tggccgtaga cccggttcgt cccctcgcca cccatgacga
     5041 agatgcggtc gcggtaccac acggtgccat ggccggatcg ggcggtcggg atcggcgcgc
     5101 ggaaggtcca ctgatccgtc cgcggatcgt aggagtggtg gaggttggag ttggtgtgga
     5161 aggtgtcgac
//
LOCUS       DASQWN010000323         2478 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1346936, whole genome shotgun sequence.
ACCESSION   DASQWN010000323 DASQWN010000000
VERSION     DASQWN010000323.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2478)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2478)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2478
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1346936"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..263
                     /locus_tag="VE686_06195"
     CDS             <1..263
                     /locus_tag="VE686_06195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012115869.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="lipoyl synthase"
                     /protein_id="HYY84075.1"
                     /translation="NEVLQLMDDLRSAEVDFLTIGQYLQPTRKHHPVIRFVPPDEFKG
                     YETTAYAKGFLLVSATPLTRSSHHAGDDFARLRAARRDRAGR"
     gene            279..746
                     /locus_tag="VE686_06200"
     CDS             279..746
                     /locus_tag="VE686_06200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009491230.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RatA family
                     toxin"
                     /protein_id="HYY84076.1"
                     /translation="MPTFRTTRRVAHTPQQMFELVADVDSYPEFVPLCEELRVRRRVQ
                     SGEGIETLVAEMSVGYKAISERFTTRVTLDRPRLRILVEYVNGPFSYLENRWSFLPAA
                     GGSDVEFYITYEFKSRALGLLMGAVFDRAFRKFAEAFEERADVVYGRPAAASA"
     gene            complement(1043..1531)
                     /locus_tag="VE686_06205"
     CDS             complement(1043..1531)
                     /locus_tag="VE686_06205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012335585.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CinA family protein"
                     /protein_id="HYY84077.1"
                     /translation="MTHPLDARATALLQACRARGWMVATAESCTGGLVAALLTEIPGS
                     SDVVERGFVTYSNEAKSEMLGVPAAVIAGHGAVSEPVARAMAEGALAHSRAQLAVAIT
                     GIAGPGGGSAAKPVGLVHFGLAVRGRPTQHRERRYGDLGRVEIRAIAVEDALALLEAA
                     LR"
     gene            complement(1528..>2478)
                     /gene="ispF"
                     /locus_tag="VE686_06210"
     CDS             complement(1528..>2478)
                     /gene="ispF"
                     /locus_tag="VE686_06210"
                     /EC_number="4.6.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009491228.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008685 - 2-C-methyl-D-erythritol
                     2,4-cyclodiphosphate synthase activity [Evidence IEA];
                     GO_process: GO:0019288 - isopentenyl diphosphate
                     biosynthetic process, methylerythritol 4-phosphate pathway
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-C-methyl-D-erythritol 2,4-cyclodiphosphate
                     synthase"
                     /protein_id="HYY84078.1"
                     /translation="GETRQASVLHGLDALAAAGQPEMVLVHDAARPFVTNALIATAIA
                     SARRHGAATAAIPVTDTIQTVDEAGTVADTLPRDRLRAIQTPQSFSFERLVAAHRAAA
                     AAGMDGFGDDGGLAAWAGMAVTVFPGDPANVKLTHPSDFEAAERRMQGSQPLITRLGT
                     GFDVHAFGPGDHIWLGGLRVAHGRGVEAHSDGDVVLHALTDAVLGALADGDIGTHFPP
                     SDPQWRGASSDRFLAFAVDRLRAAGGILDHLDATVLCEAPRIGPHREAMRARIAEIAG
                     IGIGQVSIKATTTEQLGFVGRREGIAAQAAATVRVPVSPA"
BASE COUNT          371 a          864 c          881 g          362 t
ORIGIN      
        1 ggaacgaggt gctccagctc atggatgacc tgcgctccgc cgaggtcgat ttcctcacca
       61 tcggccaata cctgcagccg acgcgcaagc accatccggt gatccgcttc gtgccgccgg
      121 acgagttcaa gggctacgag acgacggcct acgccaaggg gttcctgctg gtctcggcga
      181 ccccgctcac ccgctcgtcg caccacgccg gcgacgactt cgctcgcctg cgcgcggcgc
      241 ggcgcgacag ggctggtcgc taggcccgga acccgctcat gcccacgttc cggacgacgc
      301 ggcgcgtcgc gcacacgccg cagcaaatgt tcgagcttgt cgccgacgtc gattcctacc
      361 cggagttcgt gcccttgtgc gaggagctgc gcgtgcgccg ccgggtgcag agcggggagg
      421 ggatcgagac gctcgtcgcc gagatgagcg tcggctacaa ggccatctcc gagcggttca
      481 cgacccgcgt caccctcgac cgcccgcgcc tgcgcatcct cgtcgagtac gtcaacgggc
      541 cgttcagcta cctcgagaac cgctggagct tcctgccggc agcgggcggc tcggacgtcg
      601 agttctacat cacatacgag ttcaagagcc gcgcgctcgg gctgctcatg ggcgcggtat
      661 tcgaccgcgc cttccgcaag ttcgccgagg ccttcgagga gcgggctgac gtcgtctacg
      721 gacgcccggc ggcggcgagc gcgtaagggt cggcgccgcc cgtccctccc cgagaaggga
      781 gggcgagtcg cgcctacagg cgcggccgac gtgggggaag cccggggcat ctgcgtcggc
      841 atcgaggctc cgcccccgct cgcggggagg gctgccgtag ctccggcgcg cgatgctcat
      901 gatgatgata atgcgcactc gacgcgaaag cctctctctc ttacgacgat gatgatgcgc
      961 ggtaatcgtt tcgccgcgag ggccgccaaa tcaaccgcgc attgcagctc ctggcatgga
     1021 gttcggagcc gatggtggtc acctagcgca gagccgcctc gagaagcgca agtgcgtcct
     1081 cgacggcgat cgcccggatt tccacccggc cgagatcgcc gtagcggcgc tcgcggtgct
     1141 gggtcggacg gccccggaca gcgaggccga aatggacgag gccgacgggt ttcgccgcgc
     1201 tgccgccgcc tggcccggcg atgcccgtaa tcgctaccgc caactgggcg cgggagtggg
     1261 cgagggcgcc ttccgccatg gcgcgcgcga cgggctcgct tacggcgccg tggccggcga
     1321 tcacggcggc cgggaccccg agcatctcgc tcttggcctc attcgagtag gtcacgaacc
     1381 cgcgctcgac cacgtcggac gagccaggga tctccgtcag caatgcggcg accaggccgc
     1441 ccgtgcacga ttcggccgtt gcaaccatcc agccccgggc gcggcaggcc tggaggaggg
     1501 cggtcgcgcg cgcgtcgagc ggatgggtca tgctggactt acaggaacgc gaacggtggc
     1561 ggcggcttgc gccgcgatcc cctcgcgccg cccaacgaag ccgagttgct ccgtggtcgt
     1621 cgccttgatc gagacctggc caatgccgat gccggcaatc tcggcgatgc gggcccgcat
     1681 ggcctcgcgg tgcgggccga tccggggcgc ctcgcacagg accgtggcat cgaggtggtc
     1741 gaggatcccg cctgcggcac gcaggcgatc gaccgcgaaa gcgaggaagc gatcggagct
     1801 tgcgccgcgc cactgcgggt cgctcggcgg aaaatgcgtg ccgatgtcac cgtcggcgag
     1861 cgcgccaagc acggcgtcag tgagcgcgtg cagcacgacg tccccgtcgg agtgcgcctc
     1921 gacgccgcgc ccatgcgcga cgcgcaggcc gccgagccag atgtggtcgc cgggcccgaa
     1981 ggcatgcaca tcgaaacccg tcccgaggcg tgtaatcagc ggctggctcc cctgcatgcg
     2041 tcgctctgcg gcttcgaaat ccgaggggtg ggtcagcttc acgttggcgg ggtcgcccgg
     2101 aaagaccgtg acggccatgc cggcccaggc tgcgagcccg ccgtcgtcgc cgaagccatc
     2161 catgccggcc gcggcggcag cccggtgcgc ggcaaccaac cgctcgaatg agaagctctg
     2221 cggcgtctgg atcgcccgaa gcctgtcccg ggggagggtg tcggcgacgg tcccggcctc
     2281 atcgaccgtc tggatggtgt cggtaaccgg gatcgcggcc gtcgcggcgc cgtgccggcg
     2341 cgcgctggcg attgctgtgg cgatgagcgc gttggtgacg aacggccggg ccgcgtcgtg
     2401 gacgaggacc atctcgggct gacctgctgc agccagggcg tcgagcccat gcagaaccga
     2461 cgcctgacgc gtctctcc
//
LOCUS       DASQWN010000324         2583 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1247197, whole genome shotgun sequence.
ACCESSION   DASQWN010000324 DASQWN010000000
VERSION     DASQWN010000324.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2583)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2583)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2583
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1247197"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..535
                     /locus_tag="VE686_06215"
     CDS             <1..535
                     /locus_tag="VE686_06215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009490778.1"
                     /note="This protein belongs to the uracil DNA glycosylase
                     superfamily, members of which act in excision repair of
                     DNA. However, it belongs more specifically to UdgX branch,
                     whose founding member was found to bind uracil in DNA
                     (where it does not belong), without cleaving it, appears
                     to promote DNA repair by a pathway involving RecA, rather
                     than base excision; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="UdgX family uracil-DNA binding protein"
                     /protein_id="HYY84079.1"
                     /translation="EGPAQARIVFVGEQPGDIEDRKGRPFVGPAGQLLDRALAEAGID
                     RKQVYLTNAVKHFKFEPRGTRRIHSKPTASDVSHYRPWLNKELEIIAPSLVVALGATA
                     ILALTGKAGSITRMRGATQLGPWPGYVTVHPSYLLRIPEADKKHEAYEAFVTDLARIR
                     DIAYVARDDAPLKLAAE"
     gene            646..>2583
                     /locus_tag="VE686_06220"
     CDS             646..>2583
                     /locus_tag="VE686_06220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018264527.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008658 - penicillin binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PBP1A family penicillin-binding protein"
                     /protein_id="HYY84080.1"
                     /translation="MARGHRREPVFETSPGAGSLDVRLSHEDRAGGAMPKVRGQRSGD
                     GGREPPRGRSKKRRRPILARAFYSVVVLGLWAVIGLAAIIAYHAAQLPPIDQLAVPKR
                     PPNIAILASDGSLLANRGETGGRTVALKELPPYLPKAFVAIEDRRFFDHWGIDPVGVT
                     RAIVRNVTHRGVAQGGSTLTQQLAKNLFLTQERTASRKIQEAILALWLERNYSKNALL
                     ELYVNRVYFGAGAYGVEAAAQRYFDKPAKDVTLAEAAMLAGLVQAPSRLAPNRNPQAA
                     QARAELVLAAMGDLGFVKPEQIKTALAAPAKPARPQGAGSANYAADMVMDVLDDFVGV
                     IEADVVVQTTIEPALQAAAEKAVTDELTAKGQKFGVGQGALVAMRPDGAVKALVGGRS
                     YADSQFNRATQAKRQPGSAFKPFVYLAALERGLTPDTLRDDAPIVHKGWNPENYSRDY
                     RGPVPLRQALALSLNTVAVRLGLEVGPKAVVQTAQRLGIASPLQAVPSIALGTSEVSP
                     LELVGAYAAFANGGTGVVPYVIAQVKRGDGKVLYRRTEGGLGRVVEPGAVAAMNTMMR
                     DTFAIGTARAGAIPGWETAGKTGTSQDFRDAWFVGYTSALVTGVWLGNDDGEPTKRVS
                     GGNLPVEVWSNFMKTALKGVPP"
BASE COUNT          415 a          925 c          891 g          352 t
ORIGIN      
        1 agagggaccg gcgcaggcgc gcatcgtctt cgtcggcgag cagccaggcg acatcgagga
       61 tcgcaagggc cgcccgttcg tggggcctgc cggtcagctc ctggaccggg cgctcgcgga
      121 ggccggtatc gaccgcaagc aggtctacct caccaatgcg gtgaagcact tcaagttcga
      181 gccgcgcggc acccgccgca tccactcgaa gccgacggcg agcgatgtga gccactaccg
      241 cccgtggctt aacaaggagc tcgagatcat cgccccgtcg ctcgtggtcg ccctcggcgc
      301 gaccgccatc ctggctctca cgggcaaggc gggctcgatc acccgcatgc gcggcgcgac
      361 gcagctcggc ccctggccgg gctacgtgac cgttcacccg tcctatcttc tgcgcattcc
      421 ggaggcagac aagaagcacg aggcctacga ggcgttcgtc accgacctcg cccgcatccg
      481 cgacatagct tacgtggccc gcgacgacgc cccgctgaag ctcgcggccg agtgagggcg
      541 ggtcgccgcg cctacccgct taacgccccc ttaaagggcc gcatttaacg tctcaaaagc
      601 ggctcgggac cggggtgacc ggacacaagg ccgcggggac gtttgatggc caggggacac
      661 cggcgcgagc cggtcttcga gacgagcccg ggggcgggct cgctcgacgt gcggctgtcg
      721 cacgaggacc gggcgggggg cgcgatgccg aaggtgagag gccagcgctc cggcgacggc
      781 gggcgcgagc cgccgcgagg ccgctcgaaa aagcgccgcc gcccgatcct ggcgcgggcc
      841 ttctacagcg tcgtggtgct cgggctgtgg gccgtcatcg ggcttgcggc gatcatcgcc
      901 taccacgctg cgcagctgcc cccgatcgac cagctcgccg tgccgaagcg gccgcccaac
      961 atcgccattc tcgcaagcga tgggtcgctc ctcgccaacc gaggcgagac cggcggacgg
     1021 accgtcgcgc tcaaggagct gccgccctac ctccccaagg cgttcgtcgc catcgaggac
     1081 cggcgcttct tcgaccactg gggcattgac cccgttggag tgacgcgggc gatcgtgcgc
     1141 aacgtcaccc atcgcggcgt ggcccagggc ggctcgacgc tgacgcagca gctcgccaag
     1201 aacctgttcc tcacgcagga gcgcaccgcc tcgcgcaaga tccaggaagc gatcctggcc
     1261 ctttggcttg agcgcaatta ttcgaagaac gcgctgctgg agctctacgt gaaccgggtt
     1321 tacttcggtg ccggcgcgta cggcgtagag gccgcggcgc agcgctattt cgacaagccc
     1381 gccaaggacg tcacgcttgc cgaggcggcc atgctggcag gcctcgtcca ggccccgtcg
     1441 cgcctcgcgc ccaaccgcaa cccgcaggcc gcgcaggccc gggccgagct cgtgctcgcc
     1501 gccatgggcg acctcggctt cgtcaagccc gagcagatca agacggcgct cgccgcgcct
     1561 gcgaagcccg cgcggccgca gggagcggga tccgccaact acgccgccga catggtgatg
     1621 gacgtgctcg acgacttcgt cggcgtgatc gaggccgacg tggtggtgca aacgaccatc
     1681 gagcccgcgt tgcaggccgc tgccgagaaa gccgttaccg acgagctgac cgccaagggc
     1741 caaaagttcg gcgtcgggca gggcgcgctg gtcgccatgc gcccggacgg cgccgtgaag
     1801 gcgctcgtcg gcggacgcag ctatgccgac agccagttca accgcgccac gcaggccaag
     1861 cgccagccgg gctcggcatt caagcctttc gtgtacctcg cagccctcga gcgcggcctc
     1921 acacccgaca cgctgcgcga cgacgcgccc atcgtccaca agggctggaa cccggagaac
     1981 tactcgcgcg actaccgcgg tccggtcccg ctgcgccagg cgctggcgct gtcgctcaac
     2041 accgtcgcgg tgcggctcgg gctcgaggtc ggaccgaagg cggtggtgca gaccgcccag
     2101 cgcctcggca tcgcgtcgcc gctccaggcc gtgccgtcga tcgcgctcgg cacgtcggag
     2161 gtgagcccgc tcgagctcgt cggcgcctat gcggccttcg ccaatggcgg caccggcgtc
     2221 gtgccctacg tcatcgcgca agtgaagcgc ggcgacggca aggtcctgta ccgccggacc
     2281 gagggcgggc tcggccgcgt cgtcgagccg ggcgccgtcg cggcgatgaa cacgatgatg
     2341 cgcgacacct tcgccatcgg caccgcgcgc gccggcgcaa tcccgggctg ggagacggcg
     2401 ggaaaaacgg ggaccagcca ggatttccgc gacgcctggt tcgtcggcta tacgagcgcg
     2461 ctcgtgaccg gggtttggct cggcaacgac gacggcgagc cgacgaagcg cgtttcgggc
     2521 ggcaaccttc cggtcgaggt ctggagcaac ttcatgaaga cggcgctgaa aggtgtgccc
     2581 cca
//
LOCUS       DASQWN010000325         3854 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1048954, whole genome shotgun sequence.
ACCESSION   DASQWN010000325 DASQWN010000000
VERSION     DASQWN010000325.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 3854)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3854)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3854
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1048954"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            395..1804
                     /locus_tag="VE686_06225"
     CDS             395..1804
                     /locus_tag="VE686_06225"
                     /EC_number="3.6.4.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012336118.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004386 - helicase activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HYY84081.1"
                     /translation="MTLFSDFGLAAPIEKALAGEGYTTPTPIQTQAIPFVMNGRDLCG
                     IAQTGTGKTAAFALPMLHRLAQAQKKVLPRTCRALVLSPTRELAGQIAESFQAYGRHL
                     RISTAVVYGGVPVGKNERALAQGVDVLVATPGRLLDLIDRRALTLSGVEILVLDEADQ
                     MLDLGFIHDLKRIVRLLPKERQTLFFSATMPKTIASLAEDFLRNPAHVAVAPVATTAE
                     RVDQQVVFVSTGQKQQLLHTLLRDPVIDRALVFTRTKHGANKVVRHLEDAGFNAAAIH
                     GNKSQAQRERALADFKAGKLRLLVATDIAARGIDIDAVSHVINFDLPNVPESYVHRIG
                     RTARAGAAGIAISFCNGEERAFLKDIEKLTRQHVPVMALPSGFSAEPAPKAVASEPRA
                     QQPHHRPGRKGPPRTEQGRGRQGQPAASKQRQHADGAKRTGNGQQQQRPASSGRPAGR
                     ARQDGGSGRDGGSIRWLSR"
     gene            complement(1893..3059)
                     /locus_tag="VE686_06230"
     CDS             complement(1893..3059)
                     /locus_tag="VE686_06230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015933531.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HYY84082.1"
                     /translation="MSVEAAPRRLHFVDARPFDPGVNEPLGAESESFYRASSWKLMWW
                     KFRRHKVAVASAVVLAAFYLLVPFVEVVAPYPQAQRHSDFLYAPPQPVHLFHDGRFVG
                     PFVYPYSFRFNMETFRRDYTADETAPQQLRFFCRGEPYDLWGAIRTDVHVVCAPREGT
                     FFLLGTDRLGRDLFSRIIYGTRISLTIGLVGIAVSFTLGLFFGGIAGYLGGWVDHAVQ
                     RMIEILRSLPELPLWLALSAALPANWSPILVFFGITIILGLLDWPGLARAVRSKLLAL
                     REEDFVKAAELMGASKRRIIARHLIPNFMSHLIASATLSIPSMILGETALSFLGLGLR
                     PPVTSWGVLLNEAQNLAAVQLHPWLLFPIIPVVIVVLAFNFMGDGLRDAADPYH"
     gene            complement(3064..>3854)
                     /locus_tag="VE686_06235"
     CDS             complement(3064..>3854)
                     /locus_tag="VE686_06235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019401419.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HYY84083.1"
                     /translation="WPTPDGGFSGLLQGNWGWSFEFDKPVGEVIGDALWLTLLVNLVV
                     VVFVHVVAIPIAIYSATRQYSIGDYVATFIGYIGLATPSFLLALILLYYTNRWFGVSI
                     GGLYDPQYADQPWTWPKIQSLLSHLVVPTIVIGLGGTAAMIRRMRANLLDELSKQYYV
                     TAKAKGLPPTKALLKYPFRMSLNPFISDIGNLLPHLVSGSILVSLVLSLPTVGPILLA
                     ALKSQDQFLAGFILMFVAILTVVGMLISDLLLAALDPRIRLGGR"
BASE COUNT          691 a         1254 c         1352 g          557 t
ORIGIN      
        1 ctgtcccatc ggagcgatga acagcgtgaa ggcgtagatg agggagcccc acgacacgag
       61 ctgcgcgatc gcgagcgatc ccacgaagcc ccaaggcatc cggtctggcg gtccgtcggc
      121 catgtttcgc agcagccccc gggcgtgtga ttaccggggc gccggcgcgc tgtcattgac
      181 ttatcagcct atcgggcaca tatcaggcct cgatgttggt ccccactgcg ggaccctgag
      241 tgaggcagcg tgattcgacc gtttccagag cggtccggcc tccttcttcg aacgtctccc
      301 ctccgactgc cccgatcgcg cgggtcgtcc tcatgagccg ttggcgccaa agcttgcgcc
      361 gagggcggct cacgtctccg aaagtaactc catcttgact ctgttctccg atttcgggct
      421 cgccgcgcct atcgaaaagg cgctcgcggg cgaaggctac acgactccca cccccatcca
      481 gacccaggct atcccgttcg tcatgaacgg ccgcgacctg tgcggcatcg cccagacggg
      541 caccggcaag acggcggcgt tcgcgctgcc gatgctgcac cggctggcac aggcgcagaa
      601 gaaggtcctt cccaggacct gccgtgcgct cgtgctgagc ccgacgcgcg agctcgccgg
      661 ccagatcgcc gagagtttcc aggcctacgg ccgccacctc cggatctcga ccgcggtcgt
      721 ctacggcggc gtgccggtgg gcaagaacga gcgggccctg gcgcagggcg tcgacgtgct
      781 cgtcgccacg ccgggccggc tgctcgacct gatcgaccgc cgcgccctga cgctctccgg
      841 cgtcgagatc ctggtgctcg atgaggccga ccagatgctc gacctcggct tcatccacga
      901 cctcaagcgc atcgtcaggt tgctgcccaa ggagcgccag acactgttct tctcggcgac
      961 catgccgaag accatcgcgt cgcttgccga ggatttcctg cgcaatccgg ctcacgtcgc
     1021 ggtcgcgccg gtcgccacca cggccgagcg ggtcgatcag caggtggtct tcgtctcgac
     1081 gggccagaag cagcagctcc tgcacaccct gctgcgggat ccggtgatcg atcgggcact
     1141 ggtgttcacg cgcaccaagc acggcgccaa caaggtggtt cgccatctcg aggacgccgg
     1201 cttcaacgcg gcggcaatcc acgggaacaa gagccaggcc cagcgcgagc gcgcgcttgc
     1261 cgacttcaag gccggcaagc ttcgcctcct ggtcgcgacc gacatcgcgg cccgcggcat
     1321 cgacatcgat gccgtgtcgc acgtgatcaa cttcgacctg ccgaacgtgc ccgagtccta
     1381 cgtgcaccgc atcggccgga ccgcccgcgc gggcgccgcc ggcatcgcga tctcgttctg
     1441 caacggcgag gagcgcgcgt tcctcaagga catcgagaag ctgacacgtc agcacgttcc
     1501 cgtgatggcg ttgccgtccg gcttctcggc cgagccggcg ccgaaggcgg tcgcttcgga
     1561 gccgcgggcg cagcagccgc accaccgccc cggccgcaag ggcccgccgc ggacggagca
     1621 ggggcgtggc cggcagggtc agcccgcggc gtcgaagcag cgccagcatg cagatggagc
     1681 gaagcgcacc ggcaacggcc agcagcagca gcgcccggcg tcgtccggcc gccctgcggg
     1741 acgtgcccgg caagacggcg gctcgggccg ggacggcggc agcatccgct ggctctcgcg
     1801 ctgagctgat cctgacggca gcctcggtcg acgccttcga cgttcccttg gcccgctgcg
     1861 gttctccgct gcgggccgat ttgcgtctgg gctcagtggt acgggtcggc ggcgtcgcgc
     1921 aggccgtcgc ccatgaagtt gaaggcgagc accacgatca cgacggggat gatcgggaac
     1981 aggagccagg ggtggagctg gacggcggca aggttctggg cctcgttgag gagcacgccc
     2041 caactcgtca cgggagggcg caggccaagg cctaggaacg acagcgccgt ctcaccgagg
     2101 atcatggagg ggatcgaaag ggtcgccgag gcgatgaggt ggctcatgaa gttcgggatc
     2161 aggtggcgcg cgatgatgcg ccgcttcgat gcgcccatga gctcggcggc cttgacgaag
     2221 tcctcctcgc gtagagccag cagcttcgag cgcacggcgc gggcgagtcc cggccagtcg
     2281 agcaggccga ggatgatggt gatgccgaag aagacgagga tcgggctcca gttggcgggc
     2341 agcgccgccg agagtgcgag ccacaggggc agctccggca gggagcgcag aatctcgatc
     2401 atgcgctgaa ccgcatgatc gacccagccg ccgagatacc cggcgatgcc gccgaagaac
     2461 agaccgagcg tgaacgatac cgcgatgcct acaagcccga tggtaagcga gatacgcgtc
     2521 ccgtaaatga tgcgcgaaaa cagatcgcgg ccgaggcggt ccgtgccgag caggaagaat
     2581 gtgccctctc ggggcgcgca caccacgtgc acgtcggtgc ggatcgcgcc ccagaggtcg
     2641 tacggctcgc cgcggcagaa gaagcgcagc tgctggggcg ccgtctcgtc ggccgtgtag
     2701 tcgcgccgga acgtctccat attgaagcgg aagctgtacg ggtacacgaa gggcccgacg
     2761 aagcggccgt cgtggaacag atggacgggc tggggaggag catagaggaa gtcgctgtgc
     2821 cgctgcgcct gcgggtaggg cgcgaccacc tcgacgaagg ggacgagcag gtagaacgcc
     2881 gcgagcacga cagcggacgc gaccgccacc ttgtggcggc ggaacttcca ccacatcagc
     2941 ttccacgacg acgcgcggta gaagctctcg ctctcggcgc cgagaggctc gttgacgccc
     3001 gggtcgaacg gccgcgcgtc gacgaagtgc aggcggcgcg gagccgcttc gacgctcatg
     3061 gcctcagcgt ccccccagcc ggatgcgggg gtcgagcgcc gcgagcagca ggtcggagat
     3121 cagcattccg acgaccgtga ggatggcgac gaacatcagg atgaagcccg cgaggaactg
     3181 gtcctggctc ttcagcgccg ccagcaggat cggcccgacg gtgggaaggc tgaggacgag
     3241 cgagacgagg atcgatcccg agacgaggtg cggcaggagg ttgccgatat cggagatgaa
     3301 ggggttcaac gacatcctga aggggtactt gaggagcgcc ttggtgggcg gcaggccctt
     3361 ggccttggcg gtcacgtagt actgcttcga cagctcgtcg aggaggttgg cccgcatgcg
     3421 ccggatcatc gccgccgtgc cgccgagccc gatgacgatg gtcggaacaa cgaggtggga
     3481 gaggagcgat tggatcttgg gccaggtcca aggctggtcg gcgtattgcg ggtcgtagag
     3541 accgccgatc gagacgccga accagcggtt cgtgtaataa agcaggataa gggcgagcag
     3601 gaagcttggt gtggcgaggc cgatatagcc gatgaaggtc gcgacgtagt cgccgatcga
     3661 gtactgccgc gtcgccgagt agatggcaat cgggatcgcg accacgtgga cgaacacgac
     3721 gacgacgagg ttgacgagga gcgtcagcca gagcgcgtcg ccgatcacct cgcccacggg
     3781 cttgtcgaac tcgaacgacc agccccagtt gccctgcaag agcccgctga agccgccgtc
     3841 gggggtcggc cagg
//
LOCUS       DASQWN010000326         4867 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_325293, whole genome shotgun sequence.
ACCESSION   DASQWN010000326 DASQWN010000000
VERSION     DASQWN010000326.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 4867)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4867)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4867
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_325293"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            88..1218
                     /locus_tag="VE686_06240"
     CDS             88..1218
                     /locus_tag="VE686_06240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008961213.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M20/M25/M40 family metallo-hydrolase"
                     /protein_id="HYY84084.1"
                     /translation="MRPRDLPFETGAMLKGLRPWIECESPTFDAAAIERMMDLAARDL
                     AMAGARIERIAGRMGFGGCVRARFPHPKGDAPGILVMGHMDTVHPVGTLAALPWREDG
                     ERCYGPGILDMKGGNFLSFEAMRQLIRAGVETPLPVTFLFTSDEEVGSPSTRDLIEAE
                     AARHKYVLVPEPGRSDGGVVTGRYAIARFNLETVGKPSHAGASLAKGRSAVRAMASRI
                     LEIDGMTTDDCTFSVGVVNGGQWVNCVPTVCRAEALTMAKRQADLDRGVERILALSGT
                     DNDVTFKVARGVTRPVWEPDAGTMKLYDTARGIASDLGFDISHQSAGGGSDGNFTGPM
                     GIPTLDGLGALGDGYHTLEEFVLVDSLVQRGRLMAGLLASLS"
     gene            1299..2897
                     /locus_tag="VE686_06245"
     CDS             1299..2897
                     /locus_tag="VE686_06245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019903674.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HYY84085.1"
                     /translation="MVRNATTRWRAALGVAIGAMLTLGAGTGAAPAQDKKVLRVVMHS
                     GLRVTDPIITTAYMSRNHGYMIYDTLFAMNDKFEIKPQMAKEFTVSPDKLTYTITLRD
                     GLKFHDGKPVTTEDVIPSLQRWGKRDGMGQKLMEFTKELTAVDEKTFKLVLKEPYGLV
                     IEALGKPSSNVPFIMPKRMAETPADKNVGEEIGSGPFKFVAAEFQPGLKVVYEKNPDY
                     QPRPEPASWLSGGKVVKLDRVEWINIPDYQTAVNALINGEIDYIEQPPHDFLPVLKKA
                     KDIQLADLNPLGLSGMLRMNWLHPPFDNVKVRQAVLMAVNQQDYLDAQIGDPEFYKLC
                     PALFVCGTPLATDVGAPKKPDLEKAKQLLKEGGYDGKPIVVMQPTDLAIVAPLAPVSV
                     QALRAIGMNIDMQSMDWQTLVSRRAKQDPPAQGGWNIFHTTWVNADMTNPIGNLGMNA
                     KGKNGGWFGWAEDAEIEKMRDAFARETDPAKQKQIAADIQKRAYEVVMYVPTGQYAQP
                     YAFRKNVSGVMPGPVPVFWNMEKK"
     gene            2924..3865
                     /locus_tag="VE686_06250"
     CDS             2924..3865
                     /locus_tag="VE686_06250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018322084.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HYY84086.1"
                     /translation="MKRFILGRLVATIPVMGVVATVVFLLLRLSPGDPATILAGDAAS
                     PEQIAAIRTRLGLDQPILVQFAEWMWRLVQGDLGTSIISNQPVTKLIGERLEPTLALA
                     ITTIIFAVAVAVPLGVLAAWRHGSWIDRSVMALSVLGFSIPIFVLGYLWIFAVAMELQ
                     WLPVQGYVSLSQGFWPFLQRLILPTLTLSVIYIALIARITRASVLEVLGEDYIRTAHA
                     KGVGERSVLTRHALRNAAVPIISVIGIGIALLISGVVVTESVFNLPGLGRLTVDAVLA
                     RDYPVIQGVILLFSGLYVLINLGVDVAYTIFDPRIRY"
     gene            3922..4761
                     /locus_tag="VE686_06255"
     CDS             3922..4761
                     /locus_tag="VE686_06255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012332078.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HYY84087.1"
                     /translation="MSAHAAWRNPGVLFGIGVLVLVVLAAVLAPYLWTGDPILIRPRF
                     RLRGPSEAAWLGTDQFGRDVYSRVLYGARVSLFIGFAVAAIAVTIGLAIGLVAGYLRV
                     IDTIVMRIMDGIMAIPSILLAIAMVTLSGAGVATVIVAITIPEIPRIARLVRSVVLTV
                     REEPYVEAAIGVGTPLPVLLVRHILPNTLAPLIVQATYVCAAAILTEAILSFLGAGIP
                     TEVPSWGNIMAEGRQSFQIAPWVILFPGLCVAVTVLAINILGDGLRDTLDPRIAKSVG
                     RFQ"
BASE COUNT          774 a         1741 c         1592 g          760 t
ORIGIN      
        1 accggcggtt ggatgacggg cgcgaccgat ctggcctagt gttcgcccgc accgcgccgg
       61 cgggccattt ttacgaggag cgacgacatg aggccgcggg atcttccgtt cgagacaggg
      121 gccatgctga agggcctgcg cccgtggatc gaatgcgaga gcccgacctt cgacgccgcc
      181 gccatcgaac gcatgatgga tctcgcggct cgcgacctcg ccatggcggg ggcgcggatc
      241 gagcgcatcg ccggcaggat gggtttcggc ggctgcgtgc gggcccgctt cccgcatccg
      301 aagggcgacg ctcccggcat cctcgtcatg ggccacatgg atacggtcca cccggtcggg
      361 acactcgcgg ccctgccctg gcgcgaggac ggcgagcgct gctacggccc gggcatcctc
      421 gatatgaagg gcggcaactt cctgtccttc gaggccatgc gccagctcat ccgggccggc
      481 gtcgagacgc cgcttccggt gaccttcctg ttcacctccg acgaggaggt cggcagcccc
      541 tcgacgcgcg acctcatcga ggcggaggcg gcgcgccaca agtacgtgct ggtgccggag
      601 ccgggccgct cggacggcgg cgtggtcacc ggccgctacg ccatcgcgcg cttcaacctc
      661 gagacggtcg gcaagccgag ccacgcgggc gcgagcctcg ccaagggccg ctcggccgtg
      721 cgcgccatgg cgagcaggat cctcgagatc gacggcatga cgacggacga ctgcaccttc
      781 agcgtcggcg tcgtgaacgg cgggcaatgg gtcaactgcg tgccgaccgt gtgccgcgcc
      841 gaggcgctca ccatggccaa gcgccaggcc gacctcgacc gcggcgtcga gcgcatcctg
      901 gcgctttcgg gaaccgacaa cgacgtgacc ttcaaggtcg cgcgcggcgt gacgcggccg
      961 gtgtgggagc cggacgccgg caccatgaag ctctacgaca cggcgcgcgg gatcgcatcg
     1021 gacctcggct tcgacatctc gcaccagagc gcgggcggcg gctccgacgg caacttcacg
     1081 gggccgatgg gcatccccac ccttgacggc ctcggcgcgc tcggcgacgg ctatcacacc
     1141 ctcgaggagt tcgtcctggt ggacagcctc gtgcagcggg ggcgcctcat ggccgggctc
     1201 ctcgccagct taagctgacg ttcgacggat agctcttttc ttgcagcgcg gtccgggcca
     1261 atctgcgcga caataacaac cacgggagga cgggaaacat ggtcaggaac gcaacgacga
     1321 ggtggcgcgc cgcgcttggg gtcgccatcg gcgcgatgct cacgctcggc gcgggcacgg
     1381 gagccgcgcc ggcgcaggac aagaaggtcc tgcgcgtcgt gatgcactcg ggccttcggg
     1441 tcaccgaccc gatcatcacg accgcctaca tgtcgcgcaa ccacggctac atgatctacg
     1501 acacgttgtt cgccatgaac gacaagttcg agatcaagcc gcagatggcg aaggagttca
     1561 ccgtcagccc cgacaagctg acctacacca tcaccctgcg cgacggcctc aagttccacg
     1621 acggcaagcc ggtgacgacc gaggacgtga tcccctcgct ccagcgctgg ggcaagcgcg
     1681 acggcatggg ccagaagctc atggagttca ccaaggagct caccgccgtc gacgagaaga
     1741 ccttcaagct cgtcctgaag gagccctacg gcctcgtcat cgaggcgctc ggcaagccga
     1801 gctcgaacgt gcccttcatc atgccgaagc gcatggccga gacgcccgcc gacaagaacg
     1861 tcggcgagga gatcgggtcg ggtccgttca agttcgtggc cgccgagttc cagccgggcc
     1921 tcaaggtcgt ctacgagaag aacccggact accagccgcg gcccgaaccg gcgagctggc
     1981 tctcgggcgg caaggtggtg aagctcgacc gcgtcgagtg gatcaacatc cccgactacc
     2041 agaccgccgt gaacgccctc atcaacggcg agatcgacta catcgagcag cccccgcatg
     2101 acttcctgcc ggtgctcaag aaggcgaagg acatccagct cgccgacctg aacccgctcg
     2161 ggctctcggg catgctgcgg atgaactggc tgcacccgcc cttcgacaac gtgaaggtcc
     2221 gccaggccgt cctcatggcc gtcaaccagc aggactacct ggacgcccag atcggcgatc
     2281 cggaattcta caagctctgc ccggccctct tcgtgtgcgg cacgccgctc gcgaccgacg
     2341 tcggtgcgcc gaagaagccc gacctcgaga aggcgaagca gctcctcaag gagggcggct
     2401 acgacggcaa gccgatcgtc gtcatgcagc cgacggacct cgccatcgtg gcgccgctgg
     2461 cgcccgtgag cgtgcaggct ctgcgggcca tcggcatgaa catcgacatg cagtcgatgg
     2521 actggcagac cctcgtcagc cggcgcgcca agcaggatcc gccggcgcag ggcgggtgga
     2581 acatcttcca cacgacctgg gtcaatgcgg acatgacgaa ccccatcggc aacctcggca
     2641 tgaacgccaa gggcaagaac ggcggctggt tcggctgggc cgaggacgcc gagatcgaga
     2701 agatgcgcga tgccttcgcg cgcgagaccg atccggcgaa gcagaagcag atcgcggctg
     2761 acatccagaa gcgcgcctac gaggtcgtca tgtacgtgcc gaccggccag tacgcgcagc
     2821 cctacgcctt ccggaagaac gtcagcggcg tgatgcccgg cccggtgccg gtgttctgga
     2881 acatggagaa gaagtgaagc gctccattcc ttaagagcct ctcttgaagc gtttcatcct
     2941 cggccggctc gtcgccacca ttcccgtcat gggcgtggtg gcgacggtcg tcttcctcct
     3001 cctgcgcctg tcgccgggcg accccgcgac catcctcgcg ggcgacgccg cgagcccgga
     3061 gcagatcgcg gccatccgca cccgcctcgg cctcgaccag cccatcctgg tgcagttcgc
     3121 cgaatggatg tggcgcctcg tgcaaggcga cctcggcacc tcgatcatct cgaaccagcc
     3181 cgtgaccaag ctcatcggcg agcgcctcga gccgacgctc gcgctcgcca tcacgaccat
     3241 catcttcgcc gtcgcagtcg ccgtgcccct cggggtgctc gccgcgtggc ggcacgggag
     3301 ctggatcgac cgcagcgtca tggcgctgtc ggtgctcggg ttctcgatcc cgatcttcgt
     3361 gctcggctac ctgtggatct tcgccgtcgc catggagctg cagtggctgc ccgtgcaggg
     3421 ctacgtcagc ctctcccagg gcttctggcc gttcctgcag cgcctgatcc tgccgacgct
     3481 gacgttgagc gtgatctaca tcgcgctcat cgcccgcatc acccgcgcga gcgtgctcga
     3541 ggtgctcggc gaggactaca tccgcacggc gcacgccaag ggcgtcggcg agcgctcggt
     3601 gctgacgcgc catgcgctgc gcaacgccgc ggtgccgatc atctcggtga tcggcatcgg
     3661 catcgcgctc ctcatcagcg gcgtcgtggt gaccgagagc gtgttcaacc tccccggact
     3721 cgggcggctc accgtcgacg ccgtgctcgc ccgcgactat ccggtcatcc agggcgtcat
     3781 cctgctgttc tctggcctct acgtgctcat caacctcggc gtcgacgtcg cctacacgat
     3841 cttcgatccg aggatccgct attgagcgcc atcgaccccg tcgcagaggc cgaggcgccc
     3901 cttgtcgcga ggcgcgggcg catctcggcg catgccgcct ggcgcaaccc cggcgtcctg
     3961 ttcggcatcg gcgtgctggt gctcgtggtg cttgccgccg tgctggcgcc gtatctgtgg
     4021 accggcgacc cgatcctgat ccggccgcgc ttccgcctgc gcggcccctc cgaggccgcg
     4081 tggctcggca ccgaccagtt cgggcgcgac gtctacagcc gcgtcctcta cggcgcccgc
     4141 gtgtccctgt tcatcggctt cgcggtggcg gccatcgcag tgacgatcgg cctcgccatc
     4201 gggctcgtcg ccggctacct gcgcgtcatc gacaccatcg tcatgcggat catggacggc
     4261 atcatggcga tcccgagcat cctcctcgcc atcgccatgg tgacgctctc gggggcgggc
     4321 gtcgccaccg tgatcgtcgc catcaccatc cccgagatcc cgcgcatcgc gcgcctcgtg
     4381 cgcagcgtcg tgctgaccgt gcgcgaggag ccctacgtcg aggcggcgat tggcgtcggc
     4441 acgccgctgc ccgtgctgct cgtgcgccac atcctgccca acaccctcgc gcccctcatc
     4501 gtgcaggcga cctacgtctg cgcggcggcg atcctgaccg aggcgatcct gagcttcctc
     4561 ggcgccggca tcccgacgga ggtgccgagc tggggcaaca tcatggccga gggccgccag
     4621 tcgttccaga tcgccccgtg ggtgatcctg ttcccggggc tgtgcgtggc ggtgacggtg
     4681 ctcgccatca acatcctcgg cgacggcctg cgcgacactc tcgatccgcg catcgccaaa
     4741 agcgtcgggc gcttccagtg agcgccgacg ggccggtcct ctccgtccgc gacctgacgg
     4801 tggcgctgcc gcgcggcgcc gaccgcccgc atgccatcga gaacgtcagc ctcgaggtgc
     4861 gcccgcg
//
LOCUS       DASQWN010000327         2071 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_58171, whole genome shotgun sequence.
ACCESSION   DASQWN010000327 DASQWN010000000
VERSION     DASQWN010000327.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2071)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2071)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2071
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_58171"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..416
                     /locus_tag="VE686_06260"
     CDS             <1..416
                     /locus_tag="VE686_06260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018272975.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0015803 - branched-chain amino acid
                     transport [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="branched-chain amino acid ABC transporter
                     permease"
                     /protein_id="HYY84088.1"
                     /translation="GILALWLFLTRTYMGTAIRAISQDRQIMPLMGVDARRVYLVTSA
                     IGGGLAGLAAALMVLQYDIYPQIGLQFGPLVFMICVLGGLGNMIGGFVAAFIISQFIA
                     VGGSCMATEWGYAIAFLFFMVAVFIRPQGLFAAKS"
     gene            416..1483
                     /locus_tag="VE686_06265"
     CDS             416..1483
                     /locus_tag="VE686_06265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018272974.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0015803 - branched-chain amino acid
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid ABC transporter
                     permease"
                     /protein_id="HYY84089.1"
                     /translation="MRISRPALAGLVALIVLPWAVRFGFPGSEKYYLHVLIQILLWAF
                     IYTGWSLMGRFGLTSLGHGAFTGIGAYATVLLWNFAGITPWLGIPIGVAISVVVALLV
                     GYPCFRLRIKGHYFALMTLALTEFIRLCIVGLRDYTGGSLGTQPARAGNGISLYAVQF
                     EPDRVLSYYVVLALWAFGLVVWLRIDRSMDRYALDAANQDEDAAASVGIDVTREKLKV
                     TAISAALCALGGAMYGQYQMYIGPDTIAGLGVSLNIVFAVIAGGIGVLLGPTVGAVFT
                     QLLSEGLRVAIQGSGFLKDWLGSAALALDTAIYGLLLVLFIIYMPKGILGTLLAWRDR
                     VRAQKPLPATEAARPVPPRPA"
     gene            1547..>2071
                     /locus_tag="VE686_06270"
     CDS             1547..>2071
                     /locus_tag="VE686_06270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012330014.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HYY84090.1"
                     /translation="MYDVLIVGGGPAGLNAALVLGRCRRRVLLVDKGEPRNAPSHGVN
                     GFLTRDGCKPHDLRRVGLQELERYDTVEVRQGDVVRAQGRDSHFAIELADGQRVEGRK
                     LLLATGLHEDLPPVEGFEELFGRGVWNCPYCDGWEHRDQPLAVYGQGSSGKNFALELT
                     IWSRDLVFLTDGPTD"
BASE COUNT          264 a          735 c          693 g          379 t
ORIGIN      
        1 cgggaatttt ggcgctgtgg ctgttcctga cgcggaccta catggggacg gcaatccggg
       61 cgatctcgca ggaccggcag atcatgccgc tcatgggcgt cgacgcccgc cgcgtctacc
      121 tcgtcacctc ggccatcggc ggcgggctgg cgggcctcgc ggcggcgctg atggtgctgc
      181 agtacgacat ctacccgcag atcggcctgc agttcgggcc cctggtgttc atgatctgcg
      241 tgctcggcgg gctcggcaac atgatcggcg gcttcgtggc ggccttcatc atcagccagt
      301 tcatcgccgt cgggggatcg tgcatggcga ccgagtgggg ctacgccatc gccttcctgt
      361 tcttcatggt ggcggtgttc atcaggccgc agggcctgtt cgcggcgaag tcctgatgcg
      421 catctcccgc cccgcgctcg ccgggctcgt cgccctgatc gtgctgccct gggcggtgcg
      481 cttcggcttc ccgggctccg agaagtacta cctgcacgtc ctgatccaga tcctgctctg
      541 ggccttcatc tacaccgggt ggtcactcat gggccgcttc ggcctgacgt cgctcggcca
      601 cggcgccttc acgggcatcg gcgcttacgc gacggtgctg ttgtggaatt tcgccggcat
      661 cacgccttgg cttgggatcc cgatcggcgt cgcgatcagc gtcgtcgtcg cgctcctcgt
      721 cggctatccc tgcttccggc tgcgcatcaa gggccactac ttcgcgctga tgacgctggc
      781 gctgaccgag ttcatccgcc tgtgcatcgt cggcttgcgc gactacaccg gcgggtcact
      841 cggcacgcag ccggcccggg ccggtaacgg catctctctc tacgcggtgc agttcgagcc
      901 cgaccgcgtg ctgtcgtact acgtcgtgct cgcgctgtgg gccttcgggc tcgtcgtctg
      961 gctgcgcatc gaccgcagca tggaccgcta cgccctcgat gcggccaacc aggacgagga
     1021 cgcggcggcg tcggtcggca tcgatgtgac gcgcgagaag ctgaaggtga cggcgatctc
     1081 ggccgccctg tgcgcgctcg gcggcgccat gtacggccag taccagatgt acatcggccc
     1141 cgacaccatc gcgggtctcg gcgtgtctct caacatcgtg ttcgccgtga tcgcgggcgg
     1201 catcggcgtg ctgctcgggc cgacggtggg cgccgtcttc acgcagctcc tctccgaggg
     1261 cctgcgcgtg gcaatccagg gatcgggttt cctcaaggac tggctcggct ccgcggcgct
     1321 tgccctcgac accgccatct acggcctcct gctcgtcctg ttcatcatct atatgccgaa
     1381 ggggatcctc gggaccctgc tcgcctggcg cgatcgcgtg cgggcgcaga agccgctccc
     1441 cgcgacggaa gccgcccgcc cggtgccgcc tcggcccgcc tgacgccggc aactctttgg
     1501 tgcgccgcgg cgttgaggtc ggtcccaccc cggagcctcc ctcaacgtgt acgatgtcct
     1561 gatcgtcggc ggcggtcccg ccggcctcaa cgccgccctt gtgctcgggc gctgccgccg
     1621 gcgcgtgctc ctcgtcgaca agggcgagcc gcgcaacgcg ccctcgcacg gcgtcaacgg
     1681 gttcctgacg cgcgacggct gcaagccgca cgatctgcgc cgcgtagggc tccaggaact
     1741 cgagcgttac gacacggtcg aggtgcgcca gggagacgtg gtgcgcgcgc aagggcgtga
     1801 cagccacttc gcgatcgagc tagcggacgg ccagcgcgtg gagggccgca agctcctcct
     1861 tgccacgggc ctgcacgagg acctgccgcc cgtcgaaggc ttcgaggagc tgttcggccg
     1921 cggcgtgtgg aactgcccct attgcgacgg ttgggagcac cgcgaccagc cgctcgcggt
     1981 ctacggccag ggctcgagcg gcaagaactt cgccctcgag ctcacgatct ggagccgcga
     2041 cctcgtcttc ctcaccgacg ggccgaccga c
//
LOCUS       DASQWN010000328         4527 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_127004, whole genome shotgun sequence.
ACCESSION   DASQWN010000328 DASQWN010000000
VERSION     DASQWN010000328.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 4527)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4527)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4527
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_127004"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..838
                     /locus_tag="VE686_06275"
     CDS             <1..838
                     /locus_tag="VE686_06275"
                     /inference="COORDINATES: protein motif:HMM:NF015445.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="TRAP transporter substrate-binding protein"
                     /protein_id="HYY84091.1"
                     /translation="DVKKGTDGKVEIVLHPEDSLTKQPEVKRAVQTGQVQIGELLMST
                     HSNEAAVFGVDAIPFLATNNEENAKLLKVVRPVIEERLKKQGIRLLFVVPWPPNSFYS
                     GKEVNSTADFKGVKFRAFNPVTGRLAELMGAVPVTVQQSEVPQAFSTGVIQAMITSPA
                     TGVDTQAWDFVKYFYEVKAMAPWNIVIVNERVFSRLDQKTQEAVLAAGKAAEERGWKL
                     QAEETGKLVDTLKSKGMEVRQPSPALMAEMKKIGEQLVAEWSKAAGEDGPKILEEFRK
                     AN"
     gene            849..1358
                     /locus_tag="VE686_06280"
     CDS             849..1358
                     /locus_tag="VE686_06280"
                     /inference="COORDINATES: protein motif:HMM:NF016200.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0031317 - tripartite ATP-independent
                     periplasmic transporter complex [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0015740 - C4-dicarboxylate transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TRAP transporter small permease"
                     /protein_id="HYY84092.1"
                     /translation="MRFLDRLYAAGAILAAVFMVIIALLTLSQVIGRIIGLLIPDAGD
                     LAGYAMAAATFLALAHTFRSGGHIRVNLLLGRLAPGSRWLAELWCLGVFAVLGACFAA
                     FATKLVMDSYEFGDVSTGMMPVPLWIPQLSMAFGAILLEVAVIEELIRVARGNHPRYE
                     NAEGEAFTE"
     gene            1367..2674
                     /locus_tag="VE686_06285"
     CDS             1367..2674
                     /locus_tag="VE686_06285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006936000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0031317 - tripartite ATP-independent
                     periplasmic transporter complex [Evidence IEA];
                     GO_function: GO:0015556 - C4-dicarboxylate transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0015740 - C4-dicarboxylate transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TRAP transporter large permease subunit"
                     /protein_id="HYY84093.1"
                     /translation="MDPLLYSPLLAVALLLLLASGVWVAASLIGVALIGMLLFADAPI
                     ELVMPSTIWGSVSTWTLTALPLFVWMGEILFRTKLADDLFNGLAPWTTRLPGRLIHVN
                     VIGCGIFAAVSGSSAATAATVGQMSLPELKRRGYPEPISIGSLAASGTLGLLIPPSII
                     MIVYGVSANVSIARLFLAGVLPGLMMMALFMGYIAIWALLNKEKMPPAERTLPLAEKI
                     KGLRLLLPTVLLIMAVIGSIYTGVATATEAATLGVVGSLLVALVSGSLTWANFQESLY
                     GATRTSCMIGFIIAAAAFLSVVMGYAGIPRALASWIGTLGLSQYGLIFALTILFLILG
                     CFLDGISMVVLTTAVIMPMVEAAKIDLIWFGIFIVLVVEIAQITPPVGFNLFVVQGLT
                     GYNILRVARAVMPFFFVLCVGVVLITIFPAIATWLPQTMFSAR"
     gene            2709..4103
                     /locus_tag="VE686_06290"
     CDS             2709..4103
                     /locus_tag="VE686_06290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012317904.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016810 - hydrolase activity, acting on
                     carbon-nitrogen (but not peptide) bonds [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidase"
                     /protein_id="HYY84094.1"
                     /translation="MPHTELAFRPVHELAADVAARRLSPVDLIDAFLTRIEAHEPKLH
                     AFVEVYAEDARRAARGADEMIRSGHAVGPLHGIPVALKDLIEIEGKGVTGGCEVWRQR
                     KATRTATLARRLISQGIIVLGKTHTVEFAMGGWGTNSRLGTPWNPWDPKRRRTPGGSS
                     SGSGVAVAAGLAPWAVGTDTGGSVRLPASWCGITALKTSVGRVSTYGVLPLSPTLDTP
                     GPMTRTVEDAALMYAAMQGPDPLDPRTERLTFTDPMPTLKRGVAGLRLAKMPDSERQF
                     ASPEVLASYDAALAELERLGAEIVSVALPGGFADVAALNLRIMAAESYALLHELIDDP
                     TAALDEHVRPRIAAGRDITARAYLEALHEREGLKATFAAALAGVDALLTPTTMTTAVP
                     LDEVDQTKAPAHYTRLANFLDLCAVTVPNGFASDGLPTSLQIMCRTYDEATALRIGWA
                     YQNATSWHLRRPPE"
     gene            4114..>4527
                     /locus_tag="VE686_06295"
     CDS             4114..>4527
                     /locus_tag="VE686_06295"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY84095.1"
                     /translation="MNRREHFVALGPRRYRVERPWTTSDRVSFAGISDVTVLSSGRVV
                     VLCRSDPAVLIFEPDGSLVDTWPMPDLVAGHYIRAIAGDRLLITDFDGHRVFVLTATG
                     ERERVLGDRHHPRFGEPFSHPADAIESADGEIFVAD"
BASE COUNT          689 a         1571 c         1463 g          804 t
ORIGIN      
        1 agacgtgaag aaggggaccg acggtaaggt cgagatcgtc ctccatcccg aggactcgct
       61 gaccaagcag cccgaggtga agcgcgccgt ccagacaggt caggtgcaga tcggcgagct
      121 cctgatgtcg acccactcca acgaggcagc ggtcttcggg gtcgacgcca ttccgttcct
      181 cgccaccaac aacgaggaga atgccaagct cctcaaggtc gtccggcccg tgatcgaaga
      241 gcggctcaag aagcagggca ttcgcctgtt gttcgtggtg ccgtggccgc cgaactcctt
      301 ctactccggc aaggaggtga actcgacggc cgacttcaag ggggtgaagt tccgggcctt
      361 caacccggtt acggggcggc tcgccgagtt gatgggtgcg gtgccggtca ccgtgcagca
      421 atcggaagtg ccgcaggcat tctccaccgg cgtcatccag gcgatgatca cctcgccggc
      481 gacgggcgtc gacacgcagg catgggactt cgtgaagtac ttctacgagg tcaaggccat
      541 ggcgccgtgg aacatcgtca tcgtcaacga gcgcgtcttc agccggctcg accagaagac
      601 ccaggaggcg gtcctcgcgg ccggaaaggc ggccgaagag cgcggctgga agctgcaggc
      661 cgaggagacg ggcaagctcg tcgacacgct gaagtcgaaa ggcatggagg tgcgccagcc
      721 gagcccggca ctcatggccg agatgaagaa gatcggcgag cagctcgtgg ccgagtggtc
      781 gaaggcggcc ggcgaggacg ggcccaagat cctcgaggag ttccgcaagg ccaactgagc
      841 gcacgcggat gcgcttcctc gacagactct acgcggcggg ggcaatcctc gccgcggtct
      901 tcatggtgat catcgcgctg ctcacgctgt cgcaggtgat cggccgcatc atcggcctgc
      961 tgatcccgga cgccggcgac ctcgccggtt acgccatggc ggcagcgaca tttctcgccc
     1021 tcgcccacac gttccgcagc ggcggccaca tccgggtcaa cctgcttctc ggccggctcg
     1081 ccccagggtc ccggtggctg gcggaactct ggtgcctggg cgtgttcgcg gttctcggcg
     1141 catgcttcgc ggccttcgcg acgaagctcg tcatggactc ctacgagttc ggcgacgtct
     1201 cgaccgggat gatgccggtc ccgctctgga ttccgcagct ctcgatggcc ttcggcgcca
     1261 tcctgctcga ggtcgcggtc atcgaagagc tcatacgcgt cgcgcgcggc aaccaccccc
     1321 gctacgagaa cgccgagggc gaggccttca ccgagtagga cgcgtcatgg atccgcttct
     1381 gtacagcccg cttctcgcgg tcgccctgct gcttctgctc gcgtccggcg tgtgggttgc
     1441 ggcgtcgctc atcggcgtcg cgctcatcgg catgctgctg ttcgccgacg cgccgatcga
     1501 gctcgtgatg ccctcgacca tctggggctc ggtcagcacc tggacgctga ccgcgctgcc
     1561 gctgttcgtc tggatgggcg agatcctgtt ccggaccaag ctcgcggacg acctgttcaa
     1621 cggcctcgcg ccctggacca cccgcctccc cggtcgcctc atccacgtga acgtcatcgg
     1681 ctgcggcatc ttcgcggccg tgagcggctc ctcggccgcg accgctgcca cggtcgggca
     1741 gatgtccttg ccggagctga agcgccgcgg ctatcccgag ccgatcagca tcggctcgct
     1801 tgccgcgtcc ggcacgctgg ggctgctcat cccaccctcg atcatcatga tcgtctacgg
     1861 cgtctcggcg aacgtctcga tcgcgcgcct gttccttgcc ggggtgctgc cgggcctcat
     1921 gatgatggcc ctgttcatgg gctacatcgc catctgggcg ctgctcaaca aggagaagat
     1981 gccgccggcc gaacggaccc tgccgctggc cgagaagatc aagggactgc gcctgctcct
     2041 cccgacggtc ctcctgatca tggccgtgat cggctcgatc tacaccggcg tcgccaccgc
     2101 caccgaagcg gcgaccttgg gcgtcgtcgg ctccctcctc gtcgccctcg tgtcagggag
     2161 cctgacctgg gcgaacttcc aggaaagcct ttacggcgcg acgcgcacgt cgtgcatgat
     2221 cggcttcatc atcgccgcgg cggcgttttt gtcggtcgtc atgggatacg ccggcatccc
     2281 gcgagctctc gcgagttgga tcgggaccct cgggctgtcg caatacggcc tgatcttcgc
     2341 cctgacgatc ctgttcctca tcctcgggtg cttcctcgac gggatttcca tggtggtgct
     2401 gacgaccgcc gtgatcatgc ccatggtgga ggccgcgaag atcgacctga tctggttcgg
     2461 cattttcatc gttcttgtcg tcgagatcgc ccagatcacg ccccccgtgg gcttcaacct
     2521 gttcgtggtc cagggcctga cgggctacaa catcttgcgt gtcgcccgcg ccgtcatgcc
     2581 gttctttttc gttttgtgcg tcggcgtcgt cctcatcacc atcttccccg ccatcgccac
     2641 ctggctcccc cagaccatgt tcagcgcgcg gtaaaggcgg cgcccagaga ccacttgtag
     2701 agagcgacat gccgcacacc gaactggcct tccgccccgt gcacgagctc gccgccgacg
     2761 ttgcggcacg acggctttcg ccggtcgacc tcatcgacgc tttcctgacc cgcatcgagg
     2821 cgcacgagcc gaagctgcac gccttcgtcg aggtctacgc cgaggacgcg cggcgcgctg
     2881 cccgtggggc cgacgagatg atccggtccg gtcacgctgt cggaccgctg cacggtattc
     2941 cggttgcctt gaaggacctc atcgagatcg agggcaaggg cgtcacgggc gggtgcgagg
     3001 tctggcgcca gcgcaaggcg acgcgcaccg cgacgctcgc ccggcgcctc atctcgcaag
     3061 gcataatcgt cttgggaaag acccacaccg tcgagttcgc gatgggggga tggggcacga
     3121 attcgcgcct tggaacgcca tggaacccgt gggatcccaa gcgccggcgc acgcccggcg
     3181 gctctagcag cggctcgggc gtcgcggtcg cggcggggct cgccccctgg gctgtcggaa
     3241 cggacacggg cggctccgtg cggctcccgg cgtcctggtg cgggatcacc gcgctcaaga
     3301 ccagcgtcgg gcgggtcagc acgtatggag tcctgcccct cagcccgacg ctcgataccc
     3361 cgggaccgat gacgcgcacg gtcgaggacg ccgcgctgat gtatgccgcc atgcagggtc
     3421 ccgacccgct ggatcctcgg accgagcgcc tcaccttcac cgatcccatg ccgaccttga
     3481 agcgcggcgt cgctggtctg cgcctcgcga agatgccgga cagcgagcgc cagttcgcgt
     3541 cgcctgaggt tctcgccagc tatgatgcgg cgctggcgga actcgagcga ctcggagccg
     3601 agatcgtgtc cgttgcgctg cccggcggct tcgccgatgt ggctgccctc aacctgcgga
     3661 tcatggcggc ggagagctac gcccttcttc atgagctcat cgacgatccg accgcggccc
     3721 tcgacgagca cgtgcggccc cgcatcgctg ctggtcggga catcacggcc cgcgcctatc
     3781 tcgaagcact tcacgagcgt gagggcctga aggccacgtt tgcggccgct ctcgcggggg
     3841 tcgatgcgct cctcaccccc acaaccatga cgaccgccgt cccgcttgac gaggtggatc
     3901 agacgaaggc gccggcccat tacacgcggc tcgccaactt cctcgacctg tgcgcggtca
     3961 ccgtgccgaa cgggttcgcg tccgacggct tgcccacctc cctccagatc atgtgccgca
     4021 cttacgacga ggccaccgcg ttgcggatcg ggtgggcgta tcagaacgcg acgagctggc
     4081 acttgcgccg tccgcccgaa tagagctgca gccatgaacc gtcgcgagca cttcgtcgcc
     4141 ctcggtccgc ggcggtaccg cgtcgagcgt ccctggacga cgtccgaccg cgtttccttc
     4201 gccggcatct ccgacgtgac cgtcttgtcg tccgggaggg tggtggtgct gtgccggtca
     4261 gaccctgcgg tgctcatctt cgagcccgac ggctcgctcg tggacacctg gcccatgccc
     4321 gacctcgtcg ccggccatta catccgggcg attgccggcg atcggctcct gatcaccgac
     4381 ttcgacggac acagggtctt tgtgctgacc gcgacgggcg agcgggaacg ggttttgggc
     4441 gaccgccatc acccccgctt tggcgagccg ttcagccatc ctgccgatgc gatcgagagc
     4501 gccgacggtg agatcttcgt cgccgac
//
LOCUS       DASQWN010000329         3789 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_652045, whole genome shotgun sequence.
ACCESSION   DASQWN010000329 DASQWN010000000
VERSION     DASQWN010000329.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 3789)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3789)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3789
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_652045"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..519
                     /locus_tag="VE686_06300"
     CDS             <1..519
                     /locus_tag="VE686_06300"
                     /inference="COORDINATES: protein motif:HMM:NF019935.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional [glutamine synthetase]
                     adenylyltransferase/[glutamine
                     synthetase]-adenylyl-L-tyrosine phosphorylase"
                     /protein_id="HYY84096.1"
                     /translation="AGDPAFGAKVAEAVGCVVATPRDPAHVAREVRTMRALIAQEKGD
                     DDPWDLKLASGGLTDLDFLAQALVLGHAHRHGSLAGLSTEPTFGAAARAGLLGDEDAK
                     TLETAHRLFNDVFQWQRLTIEGDFKAAEVPPAILQRLAAVPGLPNAKALLDHLGETRR
                     AVRTIFDRVLAS"
     gene            complement(516..2843)
                     /locus_tag="VE686_06305"
     CDS             complement(516..2843)
                     /locus_tag="VE686_06305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017482633.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HYY84097.1"
                     /translation="MAGADAACGPARAGTVLGIARCAAHPALRNIERLEPWLRFAVPT
                     FLALFLATLVASAWIQTRDSRRQAVLDAIDNLDVAAALIAGRLASQQGPLDRTIAAAH
                     LAAIVRELPASALTRGRALVLANEVGDVQAVHPATGTLPRTLVELFGENQPLTVLADR
                     AGVMTVKLAQGEEAIATVRNLDRASGQIAVIQPLPQALGPWRGRAFGQITVLAGAGVV
                     LAGLGAAYLLQASRARAADDICEKLRRRIDSALSRGRCGLWDWDIARGRLYWSDSMYE
                     LLGYERHNEFLSFGEVNAMLNPADGDLYYLADQLAGSRLSQVDHEFRIRAANGDWVWI
                     RARAELMQDPDNDGRHLVGIAVDVTEQRGLAERTATADVRLRDAVEAISEAFVLWDSD
                     NRLVLCNSKFQRLHELAPESVVPGRSYDDMMDDGRPPLIQNQVARDEAHNKGARSFEA
                     QLGDGRWLQINERRTNDGGYVSVGTDITALKRHEEKLLDSERQLIATVSDLKRSRQKL
                     EAQTQQLADLAERYLDQKAQAETANRAKSEFLANMSHELRTPLNAIIGFAEVMEGGIF
                     GALGCSKYEEYVRDIRTSGHYLLSVINDILDMSRIEAGRISIAKQPLLVNEAVAKATK
                     LIAEQAKAKDLLVRVDIEPDDVTVPADERALHQILVNLLQNAVKFTAQGGCVTVRTRV
                     AANAVNIYVEDNGIGIPRQALEKLGKPFEQVETEFSKSYKGSGLGLAIARSLAELHGG
                     SLRIRSQEGVGTIVLVHLPLILGSAAASLGMPSIN"
     gene            complement(3026..>3789)
                     /locus_tag="VE686_06310"
     CDS             complement(3026..>3789)
                     /locus_tag="VE686_06310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007562294.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="aminopeptidase N C-terminal domain-containing
                     protein"
                     /protein_id="HYY84098.1"
                     /translation="PSEAEVAQEIRTDVDPEPIHRARMRLRATVGACLAEALLELRER
                     LADGDAYSPDAASAGRRSLRNQALDLIAAADPGLGTRLAGEQLETASNMTDRLAALGT
                     LALLPGDAREHALLRFADLYREEPLVLDKWFAVQAAIPDADALNRIRALMQHPAFTMT
                     NPNRVRALFGSFSLNNPTQFHRADGAGYDLVADVVLELDRSNPQVGARLLTAFGTWRT
                     MEPVRRRRAEQALRRIVATADLSPDVGDIAHRSLG"
BASE COUNT          600 a         1243 c         1295 g          651 t
ORIGIN      
        1 gccggcgacc cggcattcgg agccaaggtg gcggaggcgg tgggctgcgt cgttgcgacc
       61 ccgcgggatc cggcgcacgt tgccagggaa gtgcgcacga tgcgtgcctt gatcgcgcag
      121 gagaagggcg acgacgatcc ctgggacctc aagctcgcgt cgggcggcct gaccgatctc
      181 gattttctcg cgcaggctct cgtgctgggc catgcccatc ggcacgggtc cctcgccggg
      241 ctttcgacgg agccgacgtt tggagccgct gccagagccg ggctgcttgg cgacgaggac
      301 gcgaagaccc tcgaaaccgc gcatcgcctc ttcaacgacg tattccagtg gcagcggctc
      361 acgatcgagg gcgacttcaa ggctgccgag gtcccgcccg ccatcctgca gcggctcgcc
      421 gcggtcccgg ggttgccgaa cgccaaggcg ctcctcgacc atctcggcga gacgcggcgc
      481 gcagtgcgga cgatcttcga ccgagtgctt gccagctagt taatggaggg catgccgagg
      541 ctggcggccg ccgagccaag gatgagcggc aggtgcacga gcacgatggt gcccactcct
      601 tcctgggagc ggatgcgcag ggagccgccg tgcagctccg ccagcgagcg cgcgatggca
      661 aggcccaggc ctgacccctt gtagctcttc gagaactcgg tctcgacctg ctcgaacggc
      721 ttgcccagct tttcaagtgc ctgtcgcggg atgccgatgc cgttgtcctc gacgtagata
      781 ttgacggcgt tggcggcgac cctggtgcgc accgttacgc agccgccctg cgccgtgaac
      841 ttaaccgcgt tctgcagcag gttgaccagg atctggtgca atgcccgctc gtctgccggg
      901 accgtgacgt cgtcgggctc aatgtcgaca cgcacaagca ggtctttcgc cttcgcctgc
      961 tcggcgatca gtttggttgc cttcgcgacg gcctcgttca cgaggagcgg ctgcttggcg
     1021 atgctgatcc gcccggcttc gatgcgcgac atgtcgagga tgtcgttgat gaccgacagg
     1081 aggtagtgcc cgctcgtccg gatgtcgcgg acgtactcct catacttgct gcacccgagc
     1141 gcgccgaaga tgccgccttc catcacctcg gcgaatccga tgatcgcatt caacggggtg
     1201 cgcagctcgt ggctcatgtt ggccaggaac tcggacttgg cccggttcgc cgtctcggcc
     1261 tgtgccttct gatcgaggta gcgctcggcc agatcggcaa gctgttgcgt ctgcgcctct
     1321 agcttctggc gcgatcgctt gaggtcgctc acggtcgcga tcagctggcg ctccgagtcg
     1381 agcagcttct cctcgtgacg cttcagggcc gtgatgtcgg ttccgactga aacgtagccg
     1441 ccgtcgttcg tgcggcgctc gttgatctgc agccagcgtc cgtcgccgag ttgcgcttcg
     1501 aagctgcgag cccccttgtt gtgcgcctcg tcgcgcgcga cctggttctg gatcagcggc
     1561 ggacgtccgt cgtccatcat gtcgtcgtag ctgcggccgg gcacaacgct ttccggcgcg
     1621 agctcgtgca ggcgctggaa tttcgaattg cagaggacga ggcgattgtc ggagtcccac
     1681 agcacgaacg cttcggagat cgcctcgacg gcatcccgca gccggacatc cgcggtcgcc
     1741 gtgcgttcgg ccaagccgcg ctgttccgtc acgtcgacgg caataccgac aagatgccgc
     1801 ccgtcattgt cggggtcctg catcagttca gcccgagctc ggatccagac ccagtcacca
     1861 ttcgcggcac ggatgcgaaa ctcgtgatcg acttgcgaca ggcgcgaccc cgcgagctgg
     1921 tccgccaggt aatagagatc gccgtccgcc ggattcagca tggcattgac ttcgccgaag
     1981 gacaggaatt cgttgtggcg ctcgtatccg agcagctcgt acatcgagtc tgaccagtat
     2041 agtcggcctc tggcgatgtc ccagtcccag agcccgcagc gcccgcggct cagagcggaa
     2101 tcgatacggc gccgcagctt ctcgcaaata tcgtcggccg cgcgcgcccg gctcgcctgc
     2161 agcaggtagg ccgccccaag gcccgcgagg acgacaccgg cgcctgcaag cacggtgatc
     2221 tgcccgaagg cacgaccacg ccaggggccg agtgcttgcg gaagcggctg gatgacggcg
     2281 atctggccgg atgcgcggtc gaggttgcgg accgttgcaa tggcctcctc gccctgcgcc
     2341 agcttcaccg tcatgacgcc tgcgcggtct gcgaggactg tcagtggctg attctcgccg
     2401 aagagttcca cgagcgtgcg cggcagcgtg ccagtggcgg gatggacggc ctggacgtct
     2461 ccgacctcat tcgcgagaac cagcgctcgg ccgcgcgtga gcgcactcgc cggaagttcg
     2521 cgaacgatcg ccgcaaggtg ggccgccgcg atggtgcgat cgagcggacc ttgctgcgac
     2581 gcgaggcgcc cggcgataag ggcggcggcg acgtcgaggt tgtcgatggc atcgagaacc
     2641 gcctgccggc gcgagtcgcg cgtctggatc caggcgctgg cgacgagagt cgcgaggaaa
     2701 agagcgagaa atgtcgggac ggcgaagcgc agccagggct cgagccgctc gatgttgcgg
     2761 agggccgggt gagccgcgca gcgcgcgatc cccagtaccg tacccgcacg cgcgggtccg
     2821 cacgcggcgt ccgcgcccgc catgcgcctg cccccctgaa tgctttgatc atccccaccc
     2881 gaagggcgcc gtgcgccacc ccgaatcacg ctgagtagaa tcagcaacaa ctgatttggc
     2941 aagctcacga tgactcgccg gaaacgaatt gtttacgttg tgcgctggac ggcccttgag
     3001 cgatgagtcg ggccgtaaca cgctctcatc caagcgaccg atgggcgatg tcgcccacgt
     3061 cgggcgagag atctgcggtc gccacgatcc ggcgcaaagc ctgctcggct cgcctgcgcc
     3121 gcacgggctc catggtcctc caggtgccga aggcggtgag gaggcgcgcc ccgacctgcg
     3181 ggtttgatcg gtcgagctcg agcacgacgt cggcgacgag atcgtaccct gcgccgtcgg
     3241 cacgatggaa ctgggtcggg ttgttgagag agaagctgcc gaagagggcg cgcacgcggt
     3301 ttggatttgt catcgtgaac gcggggtgct gcatcagagc gcggatgcga ttgagagcat
     3361 ccgcatccgg gatcgccgcc tggacggcga accatttgtc cagaaccagt ggctcctcgc
     3421 ggtagaggtc ggcgaagcgc aacagggcgt gctcgcgcgc atcgcccggc agcagcgcga
     3481 gggtgccgag cgcggcaaga cggtcggtca tattcgacgc ggtctcgagc tgctcgcctg
     3541 caagccgcgt cccgagaccc ggatcggccg cggcgatgag gtcgagtgcc tggttgcgca
     3601 ggctgcggcg gccggcgctc gccgcgtccg ggctgtaggc gtcgccgtcg gccagccttt
     3661 ccctaagctc gaggagagcc tccgcgaggc acgccccgac tgtcgcgcgc aacctcatcc
     3721 gggcccggtg gatcggttcg ggatcgacgt cggtacggat ctcctgtgcg acctcggcct
     3781 cactcggga
//
LOCUS       DASQWN010000330         2183 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_58709, whole genome shotgun sequence.
ACCESSION   DASQWN010000330 DASQWN010000000
VERSION     DASQWN010000330.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2183)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2183)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2183
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_58709"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(23..211)
                     /locus_tag="VE686_06315"
     CDS             complement(23..211)
                     /locus_tag="VE686_06315"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY84099.1"
                     /translation="MLQLIRIATLSAALSAGIVTAYGGARTAAQRGANAFFDRLPQAG
                     GAPEAGLGRLLALSNPRA"
     gene            complement(377..601)
                     /locus_tag="VE686_06320"
     CDS             complement(377..601)
                     /locus_tag="VE686_06320"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY84100.1"
                     /translation="MTTESPKPRPAENGAMLAGMAAFVLVAALVPGLVGPALDQIFFG
                     YTPHHLATVIGVAAGLVAARFGYRRAAMWG"
     gene            complement(702..>2183)
                     /locus_tag="VE686_06325"
     CDS             complement(702..>2183)
                     /locus_tag="VE686_06325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003599287.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin/lipoyl-containing protein"
                     /protein_id="HYY84101.1"
                     /translation="GEFLASLESCQREAANAFGRDRVLLERYIEQPRHIEIQVFGDRH
                     GNVIYLNERECSIQRRNQKVIEEAPSPLLDEATRRRMGEQAVALARAVGYDSAGTVEF
                     VAGQDRSFYFLEMNTRLQVEHPVTEMITGIDLVEEMIRVAAGEPLRFSQADVRLEGWA
                     VESRVYAEDPTRNFLPSTGRLITYRPPAEGQRDGATVRNDTGVTEGGEISIFYDPMIA
                     KLVTHAATREEAIDAQAKALDAFAIEGIRHNIPFLSALMQHPRWREGRLSTGFIAEEF
                     PDGFKAPVPQGEIAMRMAAVAAAIDHRMNERKRLISGQMREPGRVRFQRERVVMLGGD
                     RHEVVVEDIDGGIAVVFADGISWPVESGWRPGTPVWTGFVGGQPVAAQVRAILNGIEL
                     AHAGASAQARVYTRREAELAALMPEKLLAGAGKQLLCPMPGLVKAILVKAGQEVKAGE
                     PLAIVEAMKMENVLRAERDGTVATIAAKEGESLAVDAVILEFA"
BASE COUNT          326 a          763 c          759 g          335 t
ORIGIN      
        1 tagagcttgc gcatggagcc gctcacgccc gcgggttcga gagcgcgagg aggcgcccga
       61 ggccggcctc gggcgctccg ccggcctgag gcagcctgtc gaagaatgcg tttgcgccgc
      121 gctgcgccgc ggtccgcgcc ccgccgtacg ccgtgacgat cccggcggaa agcgccgcgc
      181 tcagggtcgc aatcctgatc agttgaagca tgtcggagcc tccccgggcg catctgaacc
      241 ggcgcccgtt gacgggaggg ataggcagcc gagttttccc cgcgattgct tcggcagggt
      301 caccgcccaa ttaacgatgt cgttgccgcg tagagtgttt cggcgcctcc gggcgacgca
      361 acaaacgcgc tcccgttcac ccccacatgg ccgcgcgtcg gtagccgaag cgcgccgcga
      421 cgagccccgc cgcgacgcca atcacggtcg cgagatggtg cggcgtgtag ccgaagaaga
      481 tctggtcgag ggccggccca acgaggccgg ggacgagtgc cgccacgagc acgaacgcag
      541 ccatgccggc gagcatcgcg ccgttctcgg cagggcgggg cttgggcgac tcggtcgtca
      601 tgatcgcacc agggcggacg acgaaagcct gccgctgtcg cattcgactg ggaagccgtg
      661 cgccgaggtt acccaaagct aagtttgaag cgccgaaggg ctcaggcgaa ctcgaggatg
      721 accgcgtcga ccgcgaggct ctcgccctcc ttggcggcga tcgtcgcgac ggtcccgtcg
      781 cgctcggccc ggagcacgtt ctccatcttc atcgcctcga cgatggccag cggctcgccc
      841 gctttcacct cctggccggc cttcacgagg atcgccttga ccagcccggg catcgggcaa
      901 aggagctgct tgcccgcccc ggccagcagc ttctcgggca tcagcgcggc gagctccgcc
      961 tcgcggcgcg tgtacacccg ggcttgagcg gaggcgcccg cgtgggccag ctcgatcccg
     1021 ttcaggatgg cgcgcacctg cgcggcgaca ggctgccccc cgacgaaccc cgtccacacc
     1081 ggggtacccg ggcgccagcc ggactcgacc ggccaggaga ttccatcggc gaagacgacg
     1141 gcgatgccgc cgtcgatgtc ctcgaccacg acctcgtgcc ggtccccgcc aagcatcacg
     1201 acccgctcgc gctggaagcg cacccgcccg ggctcgcgca tctgcccgga gatcaggcgc
     1261 ttgcgttcat tcatgcggtg gtcgatggcg gccgcaaccg cggccatgcg catggcgatc
     1321 tcaccctgag gaaccggggc cttgaagccg tccgggaact cctcggcgat gaagccggtg
     1381 gagagccgcc cctcgcgcca gcgcggatgc tgcatcaggg ccgagaggaa cgggatgttg
     1441 tgacggatgc cctcgatggc gaaggcgtcg agagccttcg cctgcgcgtc gatcgcctcc
     1501 tcccgggtgg ccgcgtgggt gacgagcttg gcgatcatcg gatcgtagaa gatcgagatc
     1561 tcgccgcctt cggtcacgcc ggtgtcgttg cggaccgtgg cgccgtcgcg ctgaccttcc
     1621 gccggcgggc gataggtgat gagccgcccc gtcgagggca ggaaattgcg cgtcggatcc
     1681 tcggcgtaaa cgcggctttc gacggcccat ccctcgaggc gcacgtcggc ctggctgaag
     1741 cgcaggggct cgcccgcggc cacccggatc atctcctcga cgaggtcgat gccggtgatc
     1801 atctccgtca ccgggtgctc gacctggagc cgggtgttca tctcgaggaa gtagaaggag
     1861 cggtcctgcc cggcgacgaa ctcgaccgtg ccggccgagt cgtagccgac ggcgcgcgcc
     1921 agggcgaccg cctgctcgcc catgcgccgg cgcgtcgcct cgtcgaggag cggcgacggc
     1981 gcttcctcga tgaccttctg gttgcggcgc tggatcgagc attcgcgctc gttcaggtag
     2041 atgacgttgc cgtggcggtc gccgaagacc tggatctcga tgtgccgggg ctgctcgatg
     2101 taccgctcga gcagcacccg atcgcggccg aacgcgttgg cggcttcgcg ctggcagctt
     2161 tcgaggctgg ccaggaattc ccc
//
LOCUS       DASQWN010000331         3089 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1248383, whole genome shotgun sequence.
ACCESSION   DASQWN010000331 DASQWN010000000
VERSION     DASQWN010000331.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 3089)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3089)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3089
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1248383"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            190..1227
                     /locus_tag="VE686_06330"
     CDS             190..1227
                     /locus_tag="VE686_06330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012454307.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MaoC family dehydratase"
                     /protein_id="HYY84102.1"
                     /translation="MPRIAFEDFAPGAVFDYAGPHVTRDDIVAFAREFDPQAFHVDEE
                     AAKNTFFGTLVGSGWHVCALMMRTIVDAVLSDSTSMGAPGIEETRWLIPLRPGDHLSL
                     RQTVLDTKVSRSRPEMGLVHLRTELLNQDGKAILEQTNWSMFGRRGAHIAPFETDRPR
                     PSPGAPLATPPVAGAQFPARPAPDANAAPYFDDLEIGRVAELGSYGFAADDVVAFARR
                     FDPQPFHVDVEAARRSHFGELCASGWHTGAVWMKMMVHYRQAVTEAVRAAGGVPAQLG
                     PSPGFKNLRWSKPVYVGDTVTYRSVVAHKRPTGSRPGWGLVLSRNSGTNQLGEEVISF
                     DGCAFWERRPA"
     gene            complement(1234..1893)
                     /locus_tag="VE686_06335"
     CDS             complement(1234..1893)
                     /locus_tag="VE686_06335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013216474.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class II aldolase/adducin family protein"
                     /protein_id="HYY84103.1"
                     /translation="MSRAGDKAALCAAVVQTAQALDAAGFCPSKSGNVSVRHGERVLI
                     TPSGLPYAAMLPDDIVEIDFDGRRTGGSDRKASSEWPFHAAIYKARPDAAAIVHTHSP
                     YATALSCARRDIPAFHYMIALGGGADIRCADYATFGTQALADNAVAALEGRRAVLLAN
                     HGVITIGQTLAGAQTLAGEVENLARQYLALLAAGLAPAILDAPEMERVTAQFKGYGRA
                     V"
     gene            complement(1890..2984)
                     /gene="mtnA"
                     /locus_tag="VE686_06340"
     CDS             complement(1890..2984)
                     /gene="mtnA"
                     /locus_tag="VE686_06340"
                     /EC_number="5.3.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018263563.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046523 -
                     S-methyl-5-thioribose-1-phosphate isomerase activity
                     [Evidence IEA];
                     GO_process: GO:0019509 - L-methionine salvage from
                     methylthioadenosine [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="S-methyl-5-thioribose-1-phosphate isomerase"
                     /protein_id="HYY84104.1"
                     /translation="MKVQGRHYRTIWLGEDGRSVEVIDQTRLPHEFVVKRLATLADAA
                     EAIVTMVVRGAPLIGVTAAYGVCLGLLADPSDTGLARAVEVLSKTRPTAVNLHWALAR
                     MAAALKGRRPDERVAAAFALAAEMADDDVACCRAIGAHGAALIGDAHRRTGRRVNILT
                     HCNAGWLATVDWGTALAPIYVAHDQGVPVHVWVDETRPRNQGAALTAFELGAHGVPHT
                     IIADNAGGHLMQHGEVDLCIVGSDRTTARGDVANKIGTYLKALAAHDNGVPFYAALPS
                     STVDWTLSDGVKEIPIEERSAREVTHLTGRSDAGDIVTVHVSAPGSPAANPAFDVTPA
                     RLVSAIITERGVAPASREGLAGLFPEQAAA"
BASE COUNT          425 a         1122 c         1095 g          447 t
ORIGIN      
        1 cgttcctcct gtccgagctc ggcgccgccg agctcatcgt cggcctgctc gttgcggccg
       61 ggctgatcgg gtgtgccgcg cagggcatcg accgcgagca cgcccaccag cacgacgccg
      121 gcacgcacca cgcctgatcg gcgatgcgcg gcttgcggcg aggcgccggt ttccgttaag
      181 cccaccggca tgccccgcat cgctttcgag gacttcgcgc ccggcgccgt gttcgactac
      241 gccggcccgc acgtcacccg cgacgacatc gtcgctttcg cgcgcgagtt cgatccgcag
      301 gcgtttcacg tcgacgagga ggccgcgaag aacaccttct tcggcacgct cgtgggttcc
      361 ggctggcacg tgtgcgcgct gatgatgcgg accatcgtcg atgcggtcct gagcgactcg
      421 acatccatgg gagcacccgg gatcgaggag acccgctggc tcatccccct gcggcccggc
      481 gaccacctca gtctgcgcca gaccgtcctc gacaccaagg tgtcgcggag ccggcccgag
      541 atgggtctcg tccacctgcg caccgagctc ctgaaccagg atggcaaggc catcctcgag
      601 cagacgaact ggagcatgtt cggccgcagg ggcgcacaca tcgcgccatt cgagaccgac
      661 cgaccccgcc cctcccccgg cgcgccactc gcgacgccgc cggtcgccgg cgcgcaattt
      721 cccgcaaggc ccgcccccga cgccaacgcg gcgccctact tcgacgacct cgagatcggt
      781 cgcgtggcgg agctcggctc ctacggcttt gcggcggacg acgtcgtcgc cttcgcgcgc
      841 cgcttcgacc cgcagccctt ccacgtcgac gtcgaggcgg cccggcgcag ccacttcggc
      901 gagctctgcg cctcgggctg gcacaccggc gcggtgtgga tgaagatgat ggtccactac
      961 cgccaggccg tgaccgaagc ggtgcgcgcc gcgggaggcg tcccggcgca gctcggcccg
     1021 tcgccggggt tcaagaacct gcgctggtcg aagcctgtct acgtcggcga caccgtcacc
     1081 taccgctccg tcgtggcgca caagcgtccg acggggtcgc ggcccggctg gggcctcgtg
     1141 ctctcgcgca acagcggcac aaaccagctc ggtgaggagg tcatcagctt cgacggctgc
     1201 gccttctggg agcgccggcc ggcataacgc tcctcaaacg gcgcggccat accctttgaa
     1261 ctgggccgtc acgcgctcca tctccggggc gtcgaggatc gccggcgcga gcccggcggc
     1321 aagcagggcg agatactgcc gcgcgaggtt ctcgacctcg ccggcgaggg tctgcgcgcc
     1381 cgcgagggtc tggccgatgg tgatgacgcc atggttggca agcagcaccg cgcggcgccc
     1441 ctcgagcgcc gcgacggcgt tgtcggcgag cgcctgcgta ccgaacgtcg cgtagtccgc
     1501 gcagcggatg tcggcgcccc cgccgagcgc gatcatgtag tggaaggccg ggatgtcgcg
     1561 ccgggcgcac gagagcgccg tcgcgtaggg gctatgcgtg tgcacgatcg cggccgcgtc
     1621 cggccgcgcc ttgtagatgg cggcatggaa cggccattcg gacgatgcct tgcggtcgga
     1681 tccgcccgtg cggcggccgt cgaagtcgat ctcgacgata tcgtccggca gcatcgcggc
     1741 gtagggcagt cccgacggcg tgatcagcac gcgctcgccg tgccggaccg agacgttgcc
     1801 ggacttcgag gggcagaagc cagcggcgtc gagcgcctgc gctgtctgca ccaccgcggc
     1861 gcagagcgcc gccttgtcgc cggcgcggct cacgcggcag cctgctcggg gaacagcccg
     1921 gcgagaccct cccggcttgc gggcgcgaca ccgcgctcgg tgatgatggc cgagacgagc
     1981 cgggccggcg tcacgtcgaa ggccgggttg gcggccggac tgcccggcgc cgacacgtgc
     2041 acggtcacga tgtcgccagc gtcgctgcgg cccgtgagat gcgtcacctc gcgggcggag
     2101 cgctcctcga tggggatctc cttgactccg tccgacagcg tccagtcgac cgttgaggac
     2161 ggcagggcgg cgtagaacgg cacgccgttg tcgtgcgcgg cgagcgcctt gaggtaggtg
     2221 ccgatcttgt tggcgacgtc gccgcgcgcc gtcgtgcggt cggaaccgac gatgcacaga
     2281 tccacctcgc cgtgctgcat gaggtgaccg ccggcgttgt cggcgatgat cgtgtgaggg
     2341 acgccgtgcg ccccgagctc gaacgcggtc agcgcagcgc cctggtttcg cggccgagtc
     2401 tcgtcgaccc agacgtggac cggaacgccc tggtcgtgcg ccacgtagat cggcgccagg
     2461 gccgtgcccc agtcgaccgt cgcgagccag ccggcgttgc aatgggtgag gatgttgacg
     2521 cgccgccccg tgcgccggtg cgcgtccccg atcagagccg ccccgtgcgc gccgatggcg
     2581 cggcagcagg cgacgtcgtc gtcggccatc tcggccgcga gcgcgaaagc cgcggcgacg
     2641 cgctcgtccg gccgccggcc tttcagcgcg gccgccatgc gcgcgagcgc ccagtgcagg
     2701 ttcacggccg tcggccgcgt cttcgagagg acctcgaccg cccgtgcaag cccggtgtcg
     2761 ctcgggtcgg cgagcagtcc gaggcagacg ccgtaggcgg ccgtgacgcc gatgaggggc
     2821 gcgccgcgca cgaccatcgt gacgatcgct tccgccgcgt cggccagggt cgcgaggcgc
     2881 ttcaccacga actcgtgcgg cagccgcgtc tggtcgatga cctcgacgga acgcccgtcc
     2941 tcgccgagcc agatggtacg gtagtggcgg ccctggacct tcatctcgcc tcccgagcgg
     3001 accgcgctct tgaaaaagaa gcgcagcgcg gcgcccacgc gccgatgtcc ccgcagcctc
     3061 gcggctcggg ggtatgcttc taggcgttg
//
LOCUS       DASQWN010000332         2524 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1050175, whole genome shotgun sequence.
ACCESSION   DASQWN010000332 DASQWN010000000
VERSION     DASQWN010000332.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2524)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2524)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2524
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1050175"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..273)
                     /locus_tag="VE686_06345"
     CDS             complement(<1..273)
                     /locus_tag="VE686_06345"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY84105.1"
                     /translation="MAELKGRDTTGRWLDPESDGPAGSGQAKRDARSAGSGSELDGEF
                     GGRVTKASDAEGGDAAVEPVDFAEAVSEDKADVQKVVKDSRVNEVLE"
     gene            complement(420..839)
                     /locus_tag="VE686_06350"
                     /pseudo
     CDS             complement(420..839)
                     /locus_tag="VE686_06350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008963088.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ribulose bisphosphate carboxylase small subunit"
     gene            complement(865..2319)
                     /locus_tag="VE686_06355"
     CDS             complement(865..2319)
                     /locus_tag="VE686_06355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012046248.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="form I ribulose bisphosphate carboxylase large
                     subunit"
                     /protein_id="HYY84106.1"
                     /translation="MSESSNGKKDRWASGVTPYAEMGYYNEDYEPKDTDVLCAFRITP
                     QEGVDPIEAAAAVAGESSTATWTVVWTDRLTPHEHYQAKAYSVEEVPGTPGQYIARIA
                     YDIDLFEEGSVANLTSSIIGNVFGFKALKALRLEDMRIPVAYLKTFQGPPHGIVMERE
                     YLDKFGRPLLGATTKPKLGLSAKNYGRVVYEALRGGLDFTKDDENINSQPFMRWRDRY
                     LHAIEAVQRASAATGEVKGHYMNVTAATMEEMYERAEFAKEIGSIIIMQDLTVGCTAM
                     QSMSKWARANGMILHLHRAGHGTYTRQKLHGVSFRVIAKWCRMIGVDHIHAGTVVGKL
                     EGDPNMIRGYYDVCRERYNKVNPETGIYFDQDWASLAAVMPVASGGIHAGQMHQLLDY
                     LGEDVVLQFGGGTIGHPMGIAAGATANRVAVEAMIKARNEGKDYVEEGPDILREAAKG
                     CPELNAALEVWKDITFDFESTDTADVVATPTASR"
BASE COUNT          350 a          843 c          827 g          504 t
ORIGIN      
        1 ctcgagcacc tcgttgacgc gcgagtcctt gaccaccttc tgcacgtcgg ccttgtcttc
       61 cgacaccgcc tcggcgaaat cgacaggctc gacggcagcg tccccgccct cggcatccga
      121 ggccttggtc accctgccgc cgaactcgcc gtcgagctca gagccgctgc ctgccgagcg
      181 ggcatcccgc ttggcctggc ccgatccggc tggcccgtcc gattcaggat cgagccatct
      241 cccggtcgtg tcgcggccct tgagctcagc catcaggact caccggcccc ctcgtcgctc
      301 tgcggcgcag ggccgccgtt tccgccgccg tcggcctggt acttcgggga gtccgggcca
      361 ggcgtggcgt ccatgaccgt gctcgccgtg ttcgccgagc tcatgttgcc cttgttgccg
      421 tagcgctggc ccaccgggtc gcggtgggcg tacgggacga ccgtgtagtt catcgtgcgg
      481 tcgtgcgtct ccgtgcgctc gaggcgatag cccggctcct ccgccggccg gttgacgatg
      541 aacgacagcc gcgagctctg gcggccgagc gaggcatcgt acgccacgag cttgatgtag
      601 tggttcgggt acgccgaacg gcagtcgttg atctccgcca gcacctcggc ggcgtcgtcg
      661 ggctcgaggt cgaagttcgg ctgcttccac atgtcccaca ggttgttgcg gggatgcggg
      721 tcgtcggtgt actcgaccat gatgtcccag cggttgccga gcgcgtaacg gatctgcgcc
      781 acgatctcct cgtccgtgag gtccggcagg aacgagaagg ttccttgtgt gactctcatt
      841 gaatcgtctc ctgttcgccg ctgatcagcg gctggcggtc ggggtcgcga cgacgtcggc
      901 ggtgtccgtc gactcgaagt cgaacgtgat gtccttccag acttcgagcg cggcgttgag
      961 ctcggggcag cccttggcgg cttcccgcag gatgtcggga ccctcctcga cgtagtcctt
     1021 gccttcgttg cgcgccttga tcatcgcctc gacggcgacg cggttggcgg tggcgccggc
     1081 ggcgatcccc atgggatggc cgatcgtgcc gccgccgaac tgcaggacga cgtcctcgcc
     1141 gaggtagtcg agcagctggt gcatctgacc ggcgtggatg ccgcccgagg cgaccggcat
     1201 gactgctgcc agcgaggccc agtcctggtc gaagtagatc ccggtctccg ggttgacctt
     1261 gttgtagcgc tcgcgacaga cgtcgtagta gccgcggatc atgttcgggt cgccttcgag
     1321 cttgccgacg accgtgcccg cgtggatgtg gtcgacgccg atcatgcgac accacttggc
     1381 gatcacgcgg aagctcacgc cgtgcagctt ctgacgcgtg tacgtcccgt ggccagcgcg
     1441 gtgcaggtgc aggatcattc cgttcgcgcg cgcccacttc gacatcgact gcatcgccgt
     1501 gcagccgacg gtgaggtcct gcatgatgat gatcgagccg atctccttgg cgaactcggc
     1561 gcgctcgtac atctcctcca tcgtcgcggc cgtgacgttc atgtagtggc ccttgacctc
     1621 accggtggcg gccgaggcgc gctgcacggc ctcgatcgca tgcaggtaac ggtcgcgcca
     1681 gcgcatgaac ggctgcgagt tgatgttctc gtcgtccttg gtgaagtcca gtccgccgcg
     1741 cagggcctcg tagaccacgc ggccgtagtt cttggccgac aggccgagct tgggcttcgt
     1801 cgtcgcgccg agcagcgggc gcccgaactt gtcgaggtac tcgcgctcca tgacgatccc
     1861 gtgcggcggg ccctggaagg tcttcaggta ggcgaccggg atgcgcatgt cctccagccg
     1921 cagcgccttg agcgccttga agccgaagac gttgccgatg atcgacgaag tcaggttggc
     1981 gaccgagccc tcctcgaaga ggtcgatgtc gtaggcgatc ctcgcgatgt actgccccgg
     2041 cgtgccggga acctcttcga cggagtacgc cttcgcctgg tagtgctcgt gcggcgtcag
     2101 gcggtcggtc cagacgacgg tccatgtggc cgtggacgac tcaccggcga ccgctgcggc
     2161 ggcctcgatc ggatcgacgc cctcctgcgg cgtgatcctg aacgcgcaga gcacatcggt
     2221 gtccttgggc tcgtagtcct cgttgtagta gcccatctcc gcataggggg tgactcctga
     2281 tgcccagcgg tccttcttgc cgttcgatga ttcgctcatc ccgtcctctc tcgctgtcgc
     2341 gtgggtggat actacccgcg ccatactaag aacgaaagca aaacatgctc gctttcacat
     2401 agcttcttgg ttatgaattt cgaactcgtc accggccgcg tgcgcgccta gtcgcgcggt
     2461 tcgtcggctg tctcgatgac cgcgatgccg tccaccgtct cggccagccg cggcaccgtg
     2521 gcga
//
LOCUS       DASQWN010000333         2086 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1348571, whole genome shotgun sequence.
ACCESSION   DASQWN010000333 DASQWN010000000
VERSION     DASQWN010000333.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2086)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2086)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2086
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1348571"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..213
                     /locus_tag="VE686_06360"
     CDS             <1..213
                     /locus_tag="VE686_06360"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY84107.1"
                     /translation="YRCVFGASGEAMGEYKVTEGARLEGSARLRIGARLRTIYAPVSA
                     EPLPAEHVELVLALRRRERDDRRAQR"
     gene            complement(210..1976)
                     /locus_tag="VE686_06365"
     CDS             complement(210..1976)
                     /locus_tag="VE686_06365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011160039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM protein"
                     /protein_id="HYY84108.1"
                     /translation="MNSGSARAKTFRLVLVKPSHYDDDGYVIQWLRSPIPANSLACLY
                     GLAQDASERQALGADIALDVTAIDETNTRLRPERIAREVKAADHGVVMLVGVQSNQFP
                     RALHIAQQLRDQGVTVGIGGFHVSGTLAMLPKIEPNVQRALDMGCFIYAGEAEEGRLD
                     LILKDALTGKLQPIYNFMKDLPGIAHVPTPHLPASVIKRTYGANTSFDAGRGCPFQCS
                     FCTIINVQGRKSRRRSPDDVETIVRANAKQNIFHFFITDDNFARNKDWEAIFDRLIHL
                     REVEKINIKLIIQVDTLCHRIPNFIEKAARAGVKRVFIGLENVSPDNLQAAKKKQNKI
                     TEYRMMLLAWKKVGVLTYCGYILGFPNDTPERIKRDIEVIKRELPVDLLEFFYLTPLP
                     GSEDHKKLDAAGVWMDPDLNKYDLNHACTAHPTMSKEEWDRAYREAWETYYSDDHVET
                     ILRRAAATNVSVGKTMFVLNWFIGSIRIEGIHPLEAGFVRLKHRRDRRPEMPMESVWS
                     FYPRYAGELISKQARWLWLIYRTRKLYKAVRYGRDRYAYTDEALTPVSEHEDDLGMFQ
                     TLEAKAYVAREKHMANVRAGAA"
BASE COUNT          305 a          650 c          756 g          375 t
ORIGIN      
        1 tatcgttgcg tttttggcgc gtcgggtgag gccatgggag agtacaaggt gacggagggg
       61 gcgcggctcg aggggtcggc gcggctgcgc atcggcgcac ggctgcgcac catctacgcg
      121 ccggtcagcg cggaacccct gccggcagag cacgtcgagc tcgtcctggc gctcaggcgc
      181 cgggagcgcg acgaccgccg cgcgcagcgc taggccgcgc cggcgcggac gttcgccatg
      241 tgcttctcgc gggcgacgta ggccttggcc tcgagggtct ggaacatgcc gagatcgtcc
      301 tcgtgctccg acacgggggt cagcgcctcg tccgtgtagg catagcggtc acggccgtag
      361 cgcaccgcct tgtagagctt gcgcgtgcgg tagatgagcc acagccagcg cgcctgcttc
      421 gagatcagct cgccggcgta gcgcgggtag aagctccaca ccgattccat cggcatctcg
      481 ggccgccggt cgcgccggtg cttgaggcgc acgaagccgg cctcgagggg gtggatgccc
      541 tcgatgcgga tcgagccgat gaaccagttc aggacgaaca tggtcttgcc gacgctgacg
      601 ttggtggcgg cggcgcggcg caggatcgtc tcgacgtggt cgtccgagta gtaggtctcc
      661 caggcctcgc ggtaggcccg gtcccactcc tccttggaca tggtcggatg cgccgtgcag
      721 gcgtggttga ggtcgtactt gttgaggtcc ggatccatcc acacgccggc ggcgtcgagc
      781 ttcttgtggt cctccgaccc cggcagcggc gtgagataga agaactcgag gaggtcgacc
      841 ggcagctcgc gcttgatcac ctcgatgtcg cgcttgatgc gctcgggcgt gtcgttcggg
      901 aagccgagga tgtagccgca gtaggtcagc acgccgacct tcttccaggc cagcagcatc
      961 atccggtact cggtgatctt gttctgcttc ttcttcgccg cctgcaggtt gtcggggctg
     1021 acgttctcga ggccgatgaa cacccgcttc acgcccgccc gcgccgcctt ctcgatgaag
     1081 ttcgggatgc ggtggcacag ggtgtcgacc tggatgatca gcttgatgtt gatcttctcc
     1141 acctcgcgca ggtggatgag gcggtcgaag atcgcctccc agtccttgtt gcgggcgaag
     1201 ttgtcgtcgg tgatgaagaa gtggaagatg ttctgcttgg cgttcgcccg gacgatcgtc
     1261 tcgacgtcgt ccggcgagcg ccggcgcgat ttccgcccct ggacgttgat gatggtgcag
     1321 aacgagcact ggaaggggca gccgcgcccg gcgtcgaagc tcgtgttggc gccgtaggtg
     1381 cgcttgatga ccgaggccgg caggtgcggc gtcggcacgt gcgcgatgcc cggcaggtcc
     1441 ttcatgaagt tgtagatcgg ctgcagcttg ccggtgagcg cgtccttgag gatgaggtcg
     1501 aggcgcccct cctccgcctc gccggcgtag atgaagcagc ccatgtcgag ggcgcgctgc
     1561 acgttcggct cgatcttcgg cagcatggcg agcgtgccgg agacgtggaa gccgccgatc
     1621 ccgacggtga cgccctggtc gcgcagctgc tgggcgatgt ggagggcgcg cggaaactgg
     1681 ttcgactgca cgccgacgag catcaccacg ccgtggtcgg cggccttgac ctcgcgggcg
     1741 atgcgctcgg gacgcaggcg cgtgttggtc tcgtcgatgg cggtgacgtc gagcgcgatg
     1801 tcggcgccga gcgcctggcg ctcggaggcg tcctgggcga ggccgtagag gcaggcgagc
     1861 gagtttgccg ggatcggcga gcgcagccac tggatgacgt agccgtcatc gtcgtagtgc
     1921 gacggcttga ccagcaccag ccgaaaggtc ttggcgcgcg cgctgcccga attcatcccg
     1981 cccctcattc cgtgatgcgc cccctctaac acgaagcccc taagcccgga agttcgggcg
     2041 cgagccgggc cgaaggcgac ggcgcggccc gtacgccagc aatgtg
//
LOCUS       DASQWN010000334         2564 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1447574, whole genome shotgun sequence.
ACCESSION   DASQWN010000334 DASQWN010000000
VERSION     DASQWN010000334.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2564)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2564)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2564
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1447574"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..645)
                     /locus_tag="VE686_06370"
     CDS             complement(<1..645)
                     /locus_tag="VE686_06370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018455927.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tripartite tricarboxylate transporter permease"
                     /protein_id="HYY84109.1"
                     /translation="MDILANVAQGFAVALVPVNLLYCFMGVFIGTLVGVLPGIGPVSA
                     MSLLLPVTLAGTPEAGIIMMAGIYYGSMYGGSTTSILVNIPGEAASVVTCLDGHEMAL
                     QGRAGPALGIAALGSFFAGTFAIVALMLVAPTLAIWAVAFGPAEYFSLMVLGLVVLTF
                     LTQGSMAKALLMASVGAVLGLIGLDSITAQPRLTFDRMELYDGIGLVPVVMGLFG"
     gene            complement(655..1140)
                     /locus_tag="VE686_06375"
     CDS             complement(655..1140)
                     /locus_tag="VE686_06375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018316759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tripartite tricarboxylate transporter TctB
                     family protein"
                     /protein_id="HYY84110.1"
                     /translation="MDHDRSRSALIASAELWAALAWLALGVFVTWAGWDLGIGTAAAP
                     GSGFLPFWAGLLMCGFALSVLWSAVTEGGPSVASLWAGVRWGNVILMIASLAVYAALL
                     EPLGFLVATIPLLLVLLRGVDPVPWRTAVPLAVLSTLGVWWVLKRALLIQLPAGIFDI
                     G"
     gene            complement(1149..2114)
                     /locus_tag="VE686_06380"
     CDS             complement(1149..2114)
                     /locus_tag="VE686_06380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018644375.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0042597 - periplasmic space [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tripartite tricarboxylate transporter substrate
                     binding protein"
                     /protein_id="HYY84111.1"
                     /translation="MRAWKTLALSVVALAAAAGAAPAQDYPVKPITLIVPWPAGGSTD
                     ISMRAIAEVASKHLGQPVVIDNKAGGGGTVGPATMAATAKPDGYTIAQIPITVFRLPL
                     MQKTTWDATKDFTYIVHLTGYTFGVTSNAESQFKTWKDVVDYAKQNPGKVTYATPGAG
                     TSLHVGMEQIASQAGIKLTHVPFKGGAETNAAVLGGHTTLQADSSGWKPLVEAGKLNL
                     LMIWTANRSKNYPNTPTLKELGYPFVLDSPFGIAGPKGMDPKVVAKLHDAFKKAIDDP
                     AVQETLAKYDMVVNYKSTEDYKKHVADTIESERKIITELGLAKTN"
     gene            2354..>2564
                     /locus_tag="VE686_06385"
     CDS             2354..>2564
                     /locus_tag="VE686_06385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009466270.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2312 domain-containing protein"
                     /protein_id="HYY84112.1"
                     /translation="MSGPGGVAGDRLRAFVERIERLEEEIKQLSDDKKDIYAEAKGQG
                     FDVKILREVIRIRKQDQKELDEHASL"
BASE COUNT          424 a          795 c          954 g          391 t
ORIGIN      
        1 gccgaaaagg cccatgacca ccgggacgag cccgatgccg tcgtacagct ccatgcggtc
       61 gaaggtgagg cgtggctggg cggtgataga atcgaggccg atgagcccca gcacggcgcc
      121 gacggaggcc atcaggagcg ccttcgccat ggacccctgc gtgaggaagg tcagcaccac
      181 gaggccgagc accatgaggc tgaagtactc ggccggtccg aaggcgacgg cccagatggc
      241 gagggtcggc gcgacgagca tcagcgccac gatggcgaag gtgccggcga agaacgagcc
      301 gagcgccgcg atgccgaggg ccgggcccgc ccgcccctgg agcgccatct cgtggccgtc
      361 gaggcacgtc accacggagg cggcctcgcc ggggatgttg acgaggatcg aggtcgtgga
      421 gcccccgtac atggagccgt agtagatgcc ggccatcatg atgatgccgg cctccggcgt
      481 ccccgcgagc gtcacgggca ggagcagcga catcgccgag accgggccga tgccgggcag
      541 cacgccgacg agcgtgccga tgaacacgcc catgaagcag tacagcaggt tgacgggcac
      601 gagcgcgacc gcgaagccct gggcgacgtt ggcgaggatg tccaccgtgc ctcctcagcc
      661 gatgtcgaag atgccggcgg gcagctggat gaggagcgcg cgcttcagca cccaccagac
      721 cccgagggtc gagaggacgg cgagcgggac ggcggtgcgc cacggcaccg ggtcgacccc
      781 gcgcaacagc acgagcagca gcgggatcgt ggcgacgagg aagccgaggg gctcgagcag
      841 ggcggcgtag acggcgaggc tggcgatcat caggatcacg ttgccccagc gcacgcccgc
      901 ccacagggag gcgacgctcg ggccgccttc ggttacggcg ctccacagga ccgagagcgc
      961 gaagccgcac atcaggagcc cggcccagaa cggcaggaag ccgctgcccg gcgccgccgc
     1021 ggtgccgatg ccgaggtccc accccgccca ggtcacgaag acgccgagcg ccagccatgc
     1081 gagcgcggcc cagagctccg cgctggcgat cagcgcggag cgggagcggt cgtggtccac
     1141 gccgagcctc agttcgtctt ggcgaggccg agctcggtga tgatcttgcg ctcggactcg
     1201 atcgtgtcgg cgacgtgctt cttgtagtcc tcggtgctct tgtagttgac caccatgtcg
     1261 tacttggcca gcgtctcctg cacggccgga tcgtcgatgg ccttcttgaa ggcgtcgtgc
     1321 agcttggcga cgaccttcgg gtccatgccc ttggggccgg cgatgccgaa gggcgagtcg
     1381 aggacgaagg ggtagccgag ctccttcagc gtcggggtgt tcgggtagtt cttggagcgg
     1441 ttcgccgtcc agatcatcag gaggttgagc ttgccggcct cgacgagggg cttccagccg
     1501 ctcgagtcgg cctggagggt ggtgtgcccg ccgagcacgg cggcgttcgt ctcggcgccg
     1561 cccttgaagg ggacgtgcgt gagcttgatg cccgcctgcg aggcgatctg ctccatgccg
     1621 acgtggagcg aggtgccggc gcccggggtc gcgtaggtca ccttgcccgg attctgcttg
     1681 gcgtagtcga cgacgtcctt ccaggtcttg aactgcgact cggcgttcga ggtgacgccg
     1741 aaggtgtagc cggtgaggtg gacgatgtag gtgaagtcct tggtggcgtc ccaggtggtc
     1801 ttctgcatca ggggcaggcg gaaaaccgtg atggggatct gcgcgatggt gtagccgtcc
     1861 ggcttggcgg tcgccgccat ggtggccggg ccgaccgtgc cgccgccgcc cgccttgttg
     1921 tcgatgacga ccggctggcc gaggtgcttc gacgcaacct ccgcgatggc ccgcatgctg
     1981 atgtccgtcg agccgccggc gggccagggc acgatcagcg tgatcggctt gacgggataa
     2041 tcctgcgcgg gcgcggcgcc ggccgccgcg gcaagcgcga cgaccgagag ggcaagcgtc
     2101 ttccaggcgc gcatgtggtg tttcctccag ctttgttgtt cgagcttggc ggccaacctg
     2161 tcagaggtgg tgtcctgctg gcaagcgcca atcgaaaggc gctctgcccg atgcggtcgg
     2221 ggcgccatgg tgaacggagg gtttacggga ccgcagcaac ttaagtcatt gcttacgatg
     2281 ctcgccgggt tcgcttgccc gccggggcgc cgccgtggac cttctccttc gtcgttttga
     2341 ccaggagtgc aggatgagcg gaccgggtgg ggttgcgggt gaccgtctgc gggctttcgt
     2401 cgagcgcatc gagcggctcg aggaggagat caagcagctc agcgacgaca agaaggacat
     2461 ctacgccgag gccaagggtc aaggcttcga cgtgaagata ctccgggagg tgatccggat
     2521 caggaagcag gatcagaagg agctggacga gcacgcgtcc ctgc
//
LOCUS       DASQWN010000335         2162 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1349503, whole genome shotgun sequence.
ACCESSION   DASQWN010000335 DASQWN010000000
VERSION     DASQWN010000335.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2162)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2162)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2162
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1349503"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..212)
                     /locus_tag="VE686_06390"
     CDS             complement(<1..212)
                     /locus_tag="VE686_06390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007564280.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GMP synthase (glutamine-hydrolyzing)"
                     /protein_id="HYY84113.1"
                     /translation="MTQSHDKVLIVDFGSQVTQLIARRVREEGVYSEIVPFHAAEKAF
                     LEMKPRAVILSGGPESVTTDASPRAPA"
     gene            384..1316
                     /locus_tag="VE686_06395"
     CDS             384..1316
                     /locus_tag="VE686_06395"
                     /EC_number="2.3.2.6"
                     /inference="COORDINATES: protein motif:HMM:NF015546.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008914 - leucyl-tRNA--protein transferase
                     activity [Evidence IEA];
                     GO_process: GO:0030163 - protein catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="leucyl/phenylalanyl-tRNA--protein transferase"
                     /protein_id="HYY84114.1"
                     /translation="MSAVISAAEAGDDAPRTNRDALFRETPQERLRRVALGAAWALKP
                     PRLFGLPALARMWLADLASPAPGLPGPEAALASPPGLCGIVHDLSVPTLIEAYGRGLY
                     PFAHIAPQKWWSPPERCILDFNNFHMPKRLRSRLRQARHRVTFDRDFEAVMKACAAPR
                     ENKWQVTWITPQVMHAYAALHDAGHAHSFEVWDGEGELVGGGYGVAVGGAFAIESQFT
                     RESNTSKIGFAMLNWHLARWGFVLNDNKGPTRNVLEMGFRTVPRAEFRARLAEAVRLP
                     GRVGRWSVETDLKTVAQWFPAGESSGQRPDDAGE"
     gene            complement(1330..>2162)
                     /locus_tag="VE686_06400"
     CDS             complement(1330..>2162)
                     /locus_tag="VE686_06400"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015951356.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="RsmB/NOP family class I SAM-dependent RNA
                     methyltransferase"
                     /protein_id="HYY84115.1"
                     /translation="LRVNTLKVAAREEAHDALPHLGAVETPLSPLGLRIMPGEDGRGP
                     ALQVEPEFLKGWFEIQDEGSQLAALLTSVKPGEQVVDLCAGGGGKTLALAAMMANKGQ
                     LYATDSDQRRLAPIHDRLARAGVRNVQVRTPRARADAVTDLDGTSDCVLIDAPCTGCG
                     TWRRNPDAKWRLRPGSLSVRLGEQAAVLDRAARLVRAGGRIVYVTCSVLPEENDDAVS
                     AFLARATGFEPVPSQVVLERAWLPHLAGVIRPTQHGLQMTPRLTGTDGFYVAVLTKGA
                     "
BASE COUNT          316 a          748 c          771 g          327 t
ORIGIN      
        1 gccggcgcgc gcggcgacgc gtccgtggtc accgactcag ggccgccaga gaggatcacg
       61 gcccgaggct tcatctcgag gaaggccttc tcggcggcgt ggaacggcac gatctccgag
      121 tagaccccct cctcgcgcac acgccgggcg atcagttgcg tcacttgcga cccgaagtcg
      181 acgatgagca ccttgtcgtg ggattgggtc atgctttcca ggtatccagg cagccaagag
      241 cgcggttgcc acgtccttta gcgcctacgg caggctggag ccaaaccccg agcacacccg
      301 gtcgcgcctc gcacaccggt ttaagccgcc tttcatcctc tggggcctag ggtcccgggc
      361 gagacgacat gaaggagcgc cgggtgtcag ctgtcatcag cgccgcggaa gctggcgacg
      421 acgcgccgcg gaccaaccgc gacgcgctgt ttcgcgaaac gccgcaggag aggctgcgcc
      481 gggtcgcgct cggggccgcc tgggcgctga agccgccccg gctcttcggc ctgccggcgc
      541 ttgcccggat gtggcttgcc gacctcgcct cgccggcgcc gggcctgcct ggtccggagg
      601 cagccctcgc aagcccgccg gggctatgcg gcatcgtgca cgacctctcg gtgccgaccc
      661 tgatcgaggc ttacgggcgg ggcctgtacc ccttcgccca tatcgcgccg cagaagtggt
      721 ggtcgccgcc ggaacgctgc atcctcgatt tcaacaactt ccacatgccg aagcggctgc
      781 gcagccggct ccggcaggcc cgtcatcgcg tcactttcga ccgcgacttc gaggcggtga
      841 tgaaggcctg cgcggccccg cgcgagaaca aatggcaggt gacctggatc acgccgcagg
      901 tgatgcatgc ctatgcggcc ctgcacgacg cggggcacgc gcattccttc gaggtgtggg
      961 atggcgaagg cgagctcgtc ggcggcggct acggcgtcgc cgtgggcggc gccttcgcga
     1021 tcgagtcgca gttcacgcgc gagtcgaaca cgtcgaagat cggcttcgcc atgctgaact
     1081 ggcacttggc gcggtggggc ttcgtcctga acgacaacaa aggcccgacc cgcaacgtgc
     1141 tcgagatggg cttccgtacc gtgccccgcg ccgagttccg ggcgcgcctc gccgaagcgg
     1201 tccgcctgcc ggggcgggtc gggcgatggt cggtcgagac ggatctgaaa accgtcgcgc
     1261 agtggttccc ggccggcgag agctcagggc agcggcccga cgacgcgggc gagtgatcgc
     1321 ctgagcgggc tatgctcctt tcgtgagcac ggcgacgtag aagccgtccg ttccagtcag
     1381 ccgcggcgtc atctgcagcc cgtgctgtgt cgggcgtatg acgccggcca aatggggcag
     1441 ccatgcccgt tcgagaacga cctgggacgg caccggctcg aaacccgtgg cgcgggccag
     1501 aaaggccgag accgcgtcgt cgttctcttc gggcagcacc gagcaggtca catagacgat
     1561 gcgcccgccc gcacgcacga ggcgggcggc tcggtcgagc accgccgcct gctcgcccaa
     1621 gcgcaccgac aggctaccgg gccgcagccg ccatttggcg tccgggttgc ggcgccaggt
     1681 gccgcagccg gtgcacggcg cgtcgatgag cacgcagtcg ctcgtgccgt cgaggtccgt
     1741 gacggcgtcc gcgcgggcgc ggggcgtgcg gacctggacg ttgcgcacgc cggcgcgggc
     1801 gaggcggtcg tggatgggcg cgaggcggcg ctgatcactg tcggtggcgt agagctggcc
     1861 cttgttggcc atcatggccg caagcgcgag ggtcttgccg ccgccgccgg cgcacaggtc
     1921 gaccacctgc tcgcctggct tcactgacgt caagagcgct gcgagctgag agccttcgtc
     1981 ctggatctcg aaccagccct tgaggaactc gggctcgacc tgcagcgctg ggccgcgccc
     2041 gtcctcgccc ggcatgatcc tcaggccgag cggggaaagc ggcgtctcga cggcgccgag
     2101 atgcggcagc gcgtcgtgcg cctcctcgcg ggcggcgacc ttcagcgtgt tcaccctgag
     2161 gt
//
LOCUS       DASQWN010000336         2206 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_822351, whole genome shotgun sequence.
ACCESSION   DASQWN010000336 DASQWN010000000
VERSION     DASQWN010000336.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2206)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2206)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2206
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_822351"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            106..717
                     /locus_tag="VE686_06405"
     CDS             106..717
                     /locus_tag="VE686_06405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019904291.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0035438 - cyclic-di-GMP binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PilZ domain-containing protein"
                     /protein_id="HYY84116.1"
                     /translation="MSSAAALRPAPRPTERRRHRRVPLALLGRYMLPSHEEYPCQTVD
                     VSPGGLLLTAPVKGAVGERVVLYFEHLGRLEGEIARHTDEGFAVSLGATARKRDKLAS
                     QLTWLANRQALGLPEDRRHERVVPRNRATSLKVESGREMPVRLIDVSLSGAALSVDIR
                     PPLGASVTVGRTAAKVVRHFQGGVAVEFMLPLSPDRFDEGVVL"
     gene            1209..>2206
                     /locus_tag="VE686_06410"
     CDS             1209..>2206
                     /locus_tag="VE686_06410"
                     /EC_number="1.17.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009490920.1"
                     /note="Catalyzes the rate-limiting step in dNTP synthesis;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="vitamin B12-dependent ribonucleotide reductase"
                     /protein_id="HYY84117.1"
                     /translation="MRIERRYTTDGQSPYAAIAFRRATSEIRNPDGSVVFKLDGIEAP
                     EAWSQVAVDVLAQKYFRKAGVPARLKKVEETGVPSFLWRSVADKQALASLPEEERYGS
                     EISSQQVFDRLAGCWTYWGWKGGYFSSEEDAQAFFDEHRYMLAMQMVAPNSPQWFNTG
                     LHWAYGIDGPSQGHFYVDHHTGKLTRSKSSYEHPQPHACFIQGVQDDLVNEGGIMDLW
                     VREARLFKYGSGTGSNFSALRGEGEKLSGGGRSSGLMSFLKIGDRAAGAIKSGGTTRR
                     AAKMVVVDIDHPDIEAYIDWKVKEEQKVAALVAGSKLANRHLKAIMKACVNCEAEG"
BASE COUNT          353 a          788 c          740 g          325 t
ORIGIN      
        1 gttcacggtg tatcagggcg gcagaagcgc gctcggctaa gcacgcatta acccgggcct
       61 gtctaacgtc acgcttcacc gtggcgcgga cgagcacgcg acttgatgag ttcagctgca
      121 gcccttcgcc cagcgccccg cccgacagag cgccgccggc accgccgcgt tcccctcgcg
      181 ctgctcgggc gctacatgct gccgagccac gaagaatacc cctgccagac cgtggacgtc
      241 tctcccggcg gcctcctgct gacggctccc gtgaagggcg cggtcggcga gcgggtcgtc
      301 ctgtacttcg agcacctcgg gcgcctcgaa ggcgagatcg cgcgccacac cgacgaggga
      361 ttcgcggtct ccctgggcgc cacggcccgg aaacgcgaca agctggcgtc gcagctgacc
      421 tggctcgcca accgccaggc cctcggcctg ccggaggatc gccggcacga gcgcgtggtg
      481 ccgcgcaacc gggcgacgag cctcaaggtc gagagcgggc gtgaaatgcc ggtccggctc
      541 atcgacgtgt cgctctcggg cgccgccctc tcggtcgaca tcaggccgcc gctcggcgcc
      601 agcgtgaccg tcggccggac cgccgcgaag gtcgtgcggc acttccaggg aggcgtggcg
      661 gtggagttca tgctcccgct ctcgcccgac cgcttcgacg aaggcgtcgt cctctagcga
      721 atccggacgc cggcccgcct tcgccgcggc cgtgtgccgc gtcggaccgc tcgcccgccc
      781 tccccacctt ccccgtcatc cacaggcccg tgacgattcc gtcagacggc tcgccgcgcc
      841 gttccgcgcg cggtcggcaa ccgtttgaag cggttgcgga aatgccttgt taaggatttc
      901 caaacgactc gagaaacact atatctagtg tcgctcgacg ggactggacg ccatggcttg
      961 tgagcagatg cagcatcgag gggcgattga cgccctcgcg agactcgccc tagcgtccgt
     1021 ttccgcgatg ctcgtcccgg cccgccaagg accggtcggg catcgccttc ctaccccgac
     1081 gacggcgcga cggctcaagg gcgcatgccc gtgagacgag gggttttcgc gcccggaatc
     1141 cgggacggga tctaggggca accaacgggg cgacccgccc acagtgcggg atcgggacgg
     1201 agaagacgat gcggatcgag cggcgctaca ccaccgacgg ccagtccccc tacgccgcca
     1261 tcgccttccg gcgggcgacg agcgagatcc gcaatcccga cggctccgtc gtcttcaagc
     1321 tcgacggcat cgaggcgccg gaggcgtggt cgcaggtcgc cgtcgacgtg ctggcgcaga
     1381 agtacttccg caaggccggc gtgccggcgc gcctgaagaa ggtcgaggag accggcgtgc
     1441 cctcgttcct gtggcgctcg gtcgccgaca agcaggcgct cgcgagcctc cccgaggagg
     1501 agcgctacgg ctccgagatc tcgtcgcagc aggtcttcga tcgcctcgcc ggctgctgga
     1561 cctactgggg ctggaagggc ggctacttct cgtccgagga ggacgcgcag gccttcttcg
     1621 acgagcaccg ctacatgctc gccatgcaga tggtggcgcc gaactcgccg cagtggttca
     1681 acaccggcct gcactgggcc tacggcatcg acggcccgag ccagggccac ttctacgtcg
     1741 accaccacac cggcaagctc acccgctcga agtcctcgta cgagcacccg cagccgcacg
     1801 cctgcttcat ccagggcgtg caggacgacc tcgtcaacga gggcggcatc atggacctgt
     1861 gggtgcgcga ggcgcgcctg ttcaagtacg gctccggcac cggctcgaac ttttcggcgc
     1921 tgcgcggcga gggcgagaag ctctcgggcg gcgggcgctc gtcgggcctc atgtccttcc
     1981 tcaagatcgg cgaccgggcg gccggcgcca tcaagtcggg cggcaccacg cgccgtgcgg
     2041 ccaagatggt cgtggtcgac atcgaccacc ccgacatcga ggcctacatc gactggaagg
     2101 tgaaggagga gcagaaggtc gcggccctcg tcgccggctc gaagctcgcc aaccgccacc
     2161 tcaaggcgat catgaaggcc tgcgtgaact gcgaggccga gggcga
//
LOCUS       DASQWN010000337         2257 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_326349, whole genome shotgun sequence.
ACCESSION   DASQWN010000337 DASQWN010000000
VERSION     DASQWN010000337.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2257)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2257)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2257
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_326349"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>2257)
                     /locus_tag="VE686_06415"
     CDS             complement(<1..>2257)
                     /locus_tag="VE686_06415"
                     /inference="COORDINATES: protein motif:HMM:NF013927.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_process: GO:0017000 - antibiotic biosynthetic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="penicillin acylase family protein"
                     /protein_id="HYY84118.1"
                     /translation="ASFLAVAVPAHAVRDFSRTALNIIPSGQYGGVPIHPKADDQARM
                     YDSLTPLFDDVRPRDLLRYFKSERLGTRGQGRMRRERVPRAGVRILRDRHNVPHIRGR
                     TNDDVTWGAGWALAHDRELLLEQARFNARVAVVDAPGLNAIGLVVGLKQFVPSRQTER
                     ELRKEIGKLRRYGRPGRRLLHDMRVFVKGINAYYRSQDRTHKPWSVRDVIALNAIKSE
                     LFGEGGGGEVDAAQMLDGLQDQLGADRGLSVWNDLRQRQNPETPVSIKRNFPYAPLPA
                     NRSGNVVLDNGSFEPVPAPGAAASAAAQGEFRRQASNVLMVAGKRSRSGHPLFVGGPQ
                     IGYFYPGLTLEMDLQGPGWRARGATSAPFPGYILIGRREDFVWTLTSAGADIVDIFVE
                     TLCEGSDTKYLFRGQCRDMTPFNAGSIDGQAVSFNRTVHGPVVGYAEVGGRRVAVSRK
                     RSSYLLDGVDLLLFQRLTRGRVPNARAFLKAAAVSPQTFNTFYADDKQVAQITTGRLP
                     LRAPGVDPGLPTDGQGGHEWRGFLKPKAHPRAIKRSGVLNNWNNKPARGFPAADDQWA
                     YGSISRVDLLNDNTAKRRKHTLATLTGAMNAAATQDVRAMEFVPVLARLLKGGTAPSA
                     RATRMLQLLEEWRAQGGSRLDRDLDGKIDHPGAAILDTAWNRLADAAMTPVLGKPLAD
                     QLAETLHSRYDLPPGGQFSGWHMYMDKDIRTLLGERVRGAFANRYCGGGDVAVCRAAL
                     WAALEATGVQL"
BASE COUNT          289 a          800 c          829 g          339 t
ORIGIN      
        1 tccagctgca ctccggtcgc ctcgagcgcg gcccacagcg ccgcgcggca cacggccacg
       61 tcgccgccgc cgcagtagcg gttcgcgaac gcgccccgca cgcgctcgcc gagcagcgtc
      121 cggatgtcct tgtccatgta catgtgccac ccgctgaact ggcctccggg cgggaggtcg
      181 tagcggctgt ggagcgtctc ggccagctgg tcggcgagcg gcttcccgag caccggcgtc
      241 atcgcggcat cagcgaggcg gttccacgcg gtgtccagga tcgccgcgcc cgggtggtcg
      301 atcttgccat ccaggtcgcg gtcgagccgg ctgccgccct gcgcgcgcca ttcctcgagc
      361 agctggagca tgcgcgtcgc gcgtgcgctc ggagccgtgc cgcccttgag caggcgcgcc
      421 agcaccggca cgaactccat ggcgcggacg tcctgcgtcg cggccgcgtt catggcgccc
      481 gtgagcgtcg cgagcgtgtg cttgcggcgc ttggcggtgt tgtcgttcag caggtccacg
      541 cggctgatcg agccgtacgc ccactggtcg tccgccgcgg ggaagccgcg ggccggcttg
      601 ttgttccagt tgttgaggac gccgctgcgc ttgatcgccc gcgggtgcgc cttgggcttc
      661 aggaagccgc gccactcgtg cccgccctgg ccgtccgtcg gcaggcccgg gtccacgccc
      721 ggcgcgcgga gcgggagccg ccccgtcgtg atctgcgcaa cctgcttgtc gtccgcgtag
      781 aacgtgttga acgtctgcgg cgacacggcg gccgccttca ggaacgcgcg cgcgttcggc
      841 acgcgcccgc gcgtgaggcg ctggaacagc agcaggtcca ccccgtcgag caggtagctc
      901 gagcgcttcc gcgacacggc gacgcgccgg ccgcccacct ccgcgtagcc caccaccggg
      961 ccgtggacgg tgcggttgaa gctcaccgcc tgcccgtcga tcgagcccgc gttgaacggg
     1021 gtcatgtcgc ggcactggcc gcggaagagg tacttcgtgt cgctgccctc gcagagcgtc
     1081 tccacgaaga tgtcgacgat gtcggcgccc gccgaggtga gcgtccacac gaagtcctcg
     1141 cggcgcccga tgaggatgta gccggggaac ggcgctgagg tcgcgccgcg ggcgcgccag
     1201 ccgggcccct ggaggtccat ctcgagcgtg aggccgggat agaagtagcc gatctgcggg
     1261 ccgcccacga acagcgggtg ccccgagcgc gagcgcttgc ccgccaccat cagcacgttg
     1321 ctggcctggc ggcggaactc gccctgggcg gccgccgagg cggcggcgcc gggtgccggc
     1381 accggctcga aggagccgtt gtcgagcacg acgttgccgc tgcggttcgc gggcagcggc
     1441 gcgtatggga agttccgctt gatcgacacc ggggtctccg ggttctggcg ctggcgcagg
     1501 tcgttccaga ccgacaggcc gcgatcggcg ccgagctggt cctggaggcc gtcgagcatc
     1561 tgcgcggcgt ccacctcgcc gccgccgccc tcgccgaaca gctcgctctt gatcgcgttc
     1621 agcgcgatca cgtcgcgcac gctccacggc ttgtgggtgc ggtcctggga ccggtagtag
     1681 gcgttgatgc ccttcacgaa gacgcgcatg tcgtgcagca ggcgccgccc gggccgcccg
     1741 tagcggcgga gctttccgat ctccttgcgg agctcgcgct ctgtctgccg gctcgggacg
     1801 aactgcttca ggccgaccac cagcccgatg gcgttcaggc ccggcgcgtc cacgaccgcg
     1861 acgcgggcgt tgaagcgcgc ctgctcgaga agcagctcgc ggtcgtgcgc cagcgcccag
     1921 ccggcgcccc aggtcacgtc gtcgttggtg cgcccgcgga tgtgcggcac gttgtggcgg
     1981 tcgcggagta tccgaacgcc cgcgcgcggc actcgctcgc ggcgcatgcg cccctgccct
     2041 ctcgtgccaa gcctctcgga cttgaagtag cggaggaggt cgcgcggccg gacgtcgtcg
     2101 aagagcgggg tgagcgagtc gtacatccgc gcctggtcgt ccgccttggg atgaatcggg
     2161 acgccgccgt actggcccga cgggatgatg ttgagcgccg tgcgagagaa gtcgcggacg
     2221 gcatgggcgg ggacggcgac ggccaagaaa gaagcgg
//
LOCUS       DASQWN010000338         4169 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1051294, whole genome shotgun sequence.
ACCESSION   DASQWN010000338 DASQWN010000000
VERSION     DASQWN010000338.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 4169)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4169)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4169
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1051294"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            242..703
                     /gene="rplM"
                     /locus_tag="VE686_06420"
     CDS             242..703
                     /gene="rplM"
                     /locus_tag="VE686_06420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013167026.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L13"
                     /protein_id="HYY84119.1"
                     /translation="MKTTSLKPADVEKKWVLIDAQGLVVGRLASIVAMRLRGKHKPAY
                     TPHVDCGDNVIVINADKVVLTGRKREQKVYYHHTGYPGGIKERSAKSILEGRFPERVV
                     EKAVERMLPRGPLFRKILGNLRVYKGTEHPHTAQQPEALDVGALNRKNVSL"
     gene            707..1183
                     /gene="rpsI"
                     /locus_tag="VE686_06425"
     CDS             707..1183
                     /gene="rpsI"
                     /locus_tag="VE686_06425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015926908.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S9"
                     /protein_id="HYY84120.1"
                     /translation="MATLQSLADLGQQAPSVQPDAPVYTQKLDPQGRAYATGKRKDAV
                     ARVWIKPGGGRIVINEKPVEQYFARPVLRMVLAQPLHVANRVDQYDIVVTVAGGGLSG
                     QAGAVRHGLAKALTNFEPDLRPALKKEGFLTRDPRVVERKKYGRKKARRSFQFSKR"
     gene            complement(1296..1700)
                     /locus_tag="VE686_06430"
     CDS             complement(1296..1700)
                     /locus_tag="VE686_06430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006609183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupin domain-containing protein"
                     /protein_id="HYY84121.1"
                     /translation="MIRLTVSAALLALCVTGSASAQQASWPPNTPIKRTVLQKFDVAD
                     SKSETIVGIAEVAPNVNIGRHTHFGVEAGYVIEGEVTLLVAGQPDKPLKPGDSYQIAP
                     GAPHDARSGDKGAKIIATYVVEKGKPLSTPAP"
     gene            complement(1787..2626)
                     /locus_tag="VE686_06435"
     CDS             complement(1787..2626)
                     /locus_tag="VE686_06435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003501757.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SAM-dependent methyltransferase"
                     /protein_id="HYY84122.1"
                     /translation="MARRAAAVDDARARYAESIARAAWVTDPRIERAFALIPREGFLP
                     PPPWTVFPPGGFFKRPTSDAKELYDDVLVVLDARRGVNNGQPSLHAAWIAAVDPRPGE
                     TVVHVGAGSGYYTAILGVLVVPGGAVHAYEINPALAALAARNLACLDHVAVHGETALG
                     QALPEADVMYVNAGVAAPDPGWLRALKPGGRLIFPWQPSGPGGTTLLVRRVPAGFAAK
                     PTLSVGFIACEGTATAERNRRPSAEAIDRTRSVWLTADRHPDETATAAYDEVWFSTRD
                     LPG"
     gene            2789..3757
                     /gene="arsS"
                     /locus_tag="VE686_06440"
     CDS             2789..3757
                     /gene="arsS"
                     /locus_tag="VE686_06440"
                     /inference="COORDINATES: protein motif:HMM:TIGR04167.1"
                     /note="Some members of this family are selenoproteins;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology.
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="arsenosugar biosynthesis radical SAM
                     (seleno)protein ArsS"
                     /protein_id="HYY84123.1"
                     /translation="MHDTLPRLDAIRFPPLTRGALTTLQVNLGYRCNQSCFHCHVNAG
                     PNRTEAMDEDTIDLVLEVLERRRLTTLDLTGGAPELHPSFRRLVVAARDLGAKVMDRC
                     NLTILSEEGQDDLAGFLAANDVEVVASMPCYLEENVDAQRGKGVFERSIAGLRRLNGL
                     GYGDPRTGLALNLVFNPQGPSLPPPQAALEADYKRVLAERYGIVFNALFALANMPIQR
                     FGSTLVSKRQFDDYMRLLGQAHRDENLAGVMCRSLVSVDYLGFLHDCDFNQMLGLPLG
                     GGGRPHLRDLLVEDVEGREIRVAGHCFGCTAGQGSSCGGALKEAAE"
     gene            3754..>4169
                     /locus_tag="VE686_06445"
     CDS             3754..>4169
                     /locus_tag="VE686_06445"
                     /inference="COORDINATES: protein motif:HMM:NF012745.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HYY84124.1"
                     /translation="MRLSIVVPVLDEAEGIAAHLSALAPLRANGAEVIVVDGGSTDAT
                     CELAGPLADRVVVAPRGRATQMNAGAALASGDVLLFLHADTRLPADADRLIAAAFTGG
                     GRPWGRFDVEIEGRHPLLPLVAGLMNLRSRVTGIATG"
BASE COUNT          645 a         1436 c         1446 g          642 t
ORIGIN      
        1 cgcacagagg gccagccgag cggccgcatc gtcacgcact agcgcagccg tttttaatgc
       61 ggtattaagg taccgcatca gccaagatgc ggcgccgtaa gcgctttttg cgcgcgccat
      121 gctgctgaaa tacgttgaca gggccgtccg cctctcctat gtcgcacgcc atcgccgccg
      181 cgggtccgcg gcggtttgtc gtttggaaga ggggcgccaa gccttgcacg ggatcaccgc
      241 gatgaagacc acttcgctga agcccgccga cgtcgagaaa aagtgggtcc tcatcgatgc
      301 gcaggggctg gtcgtcggcc gcctcgcctc gatcgtggcg atgcggctgc gcggcaagca
      361 caagcccgcc tacacgcccc acgtcgactg cggcgacaac gttatcgtca tcaatgccga
      421 caaggtggtc ctcacgggcc gcaagcgcga gcagaaggtg tactaccacc acaccggcta
      481 tccgggcggc atcaaggagc gctcggccaa gtcgatcctc gaggggcgct tccccgagcg
      541 tgtggtcgag aaggccgtgg agcgcatgct cccgcgcggt ccactgttcc gcaagatcct
      601 cggcaacctg cgcgtctaca agggcaccga gcatccccac acggcgcagc agcccgaagc
      661 cctcgacgtc ggcgccctca accgcaagaa tgtgagcctc taagccatgg cgacccttca
      721 gtccctcgcc gacctcggcc agcaggcgcc gtccgtccag cccgacgcgc ccgtctacac
      781 ccagaagctc gacccgcaag ggcgcgccta cgccaccggc aagcgcaagg acgcggtcgc
      841 ccgcgtctgg atcaagcccg gcggcggccg catcgtcatc aacgagaagc cggtggagca
      901 gtacttcgcc cgtcccgtgc tgcgcatggt cctcgcccag ccgctgcacg tggcgaaccg
      961 cgtcgaccag tacgacatcg tcgtgaccgt cgcgggcggc ggcctctcgg gccaggccgg
     1021 cgcggtgcgc cacggcctcg ccaaggcgct gacgaacttc gagccggatc tgcggccggc
     1081 cctcaagaaa gagggcttcc tgacccgcga cccgcgcgtc gtcgagcgca agaagtacgg
     1141 ccgcaagaaa gcccgccgca gcttccagtt ctcgaagcgt taaacggcat cagatttcac
     1201 ggacgagaga gggcggcttc ggccgccctt ttttgttttc tgtgacgcct gctcggcggc
     1261 tcgtgagacg tgcgtcgcgc ggtcgaccca ggttgtcagg gcgcaggcgt cgacaagggc
     1321 ttgcccttct cgaccacgta ggtggcgatg atcttcgccc ccttgtcgcc cgagcgtgcg
     1381 tcgtgcggcg cgcctggtgc gatctggtag gagtcgccgg gcttcagcgg cttgtccggc
     1441 tggcctgcga cgagcagcgt cacttcgccc tcgatcacat acccagcctc gaccccgaag
     1501 tgggtatggc gaccgatatt cacgttcggc gcgacctcgg cgataccgac gatcgtctcg
     1561 gatttgctgt cggcgacgtc gaatttctgc agcaccgtgc gcttgattgg cgtgttgggt
     1621 ggccaacttg cctgttgtgc gctcgccgag ccggtgacgc aaagcgcgag gagagcggcg
     1681 gaaacggtca gtctgatcat gggacctcca aggatggcgg gagcgctggc ggacgcaatc
     1741 gtggcacaac tttagacacg ctgtcgccca tgccgcgccg gcgctctcac ccggggaggt
     1801 ctctcgtcga aaaccacact tcgtcgtagg cggccgtggc ggtctcgtcg gggtggcgat
     1861 cggcggtgag ccagacggag cgggtgcggt cgatcgcttc ggcgctcggc cgcctgtttc
     1921 gctcggcggt cgcggtgcct tcgcacgcga tgaagccgac cgagagggtt ggtttcgccg
     1981 caaaccctgc cggcacgcgc cggacgagga gggtcgtccc gcccggtccc gagggctgcc
     2041 acggaaagat gaggcgcccg cccggcttga gcgcccggag ccagcccggg tcaggcgccg
     2101 cgacgcctgc gttcacgtac atgacgtccg cctcgggcag ggcctgcccg agcgccgttt
     2161 cgccgtgcac ggcgacatga tcgaggcagg cgagattgcg agccgcgagg gccgcgaggg
     2221 ccggattgat ctcataggcg tggacggcgc cgcccggaac cacgagcacg ccgaggatcg
     2281 ccgtgtaata gccggagccg gcgccgacgt gcaccaccgt ctcgccgggc cgcggatcga
     2341 cggcagcgat ccaggctgcg tgcagcgacg gctggccgtt gttgacgccg cgccgggcgt
     2401 cgaggaccac gagcacgtcg tcgtagagct ccttcgcgtc ggaggtcggc cgcttgaaga
     2461 agcctcccgg cgggaacacg gtccagggcg gcggcggcag gaagccctcg cgcgggatca
     2521 gcgcgaacgc gcgctcgatc cgggggtccg tcacccaggc ggcgcgcgcg atggattcgg
     2581 cgtagcgcgc ccgggcgtcg tcgacggctg cggcgcggcg ggccatccgc cctcctcata
     2641 cgaccgcgat cgggttcgag ccgcattctc ccagccgacc gccggaaggg caagccgcgc
     2701 gacgaaggcg tctcgcgcaa cggtgatgca aaagtcggtg cgaggtgtgc cgccgagcgg
     2761 tacggtgcgg cgcgctcagg agacctcgat gcacgacacg ctgcctcgcc tcgatgccat
     2821 tcgctttccg ccgctcaccc gcggcgcgct gacgacgctg caggtcaatc tcggataccg
     2881 ctgcaaccag tcgtgcttcc actgccacgt caacgccggc ccgaaccgca ccgaggccat
     2941 ggacgaggac acgatcgatc tggtgctcga ggtgctcgag cggcgtcggc tgaccacgct
     3001 cgatctgacc ggcggcgcgc ccgagctgca cccgagcttc cgccgactgg tcgtggcagc
     3061 gcgggacctg ggcgcgaagg tcatggaccg gtgcaacctg accatcctgt cggaggaagg
     3121 tcaggacgac ctggccgggt tcctcgccgc gaacgacgtc gaggtcgtgg cttcgatgcc
     3181 atgctatctc gaggagaacg tcgatgcgca gcgcggaaag ggcgtgttcg agaggagcat
     3241 tgcggggctg cggcgcctca acggcctcgg ctacggcgac ccgcgcaccg gcctggcgct
     3301 gaacctcgtc ttcaacccgc aggggccaag cctgccgccg ccgcaggctg ccttggaggc
     3361 cgactacaag cgcgtgctcg ccgagcgcta cggcatcgtc ttcaatgcgc tgttcgcgct
     3421 cgccaacatg ccgatccagc gcttcggctc gacgctcgtc tcgaagcgcc agttcgacga
     3481 ctacatgcgc ctgctcgggc aggcgcaccg ggacgagaac ctcgccggcg tgatgtgtcg
     3541 gtcgctcgtc agcgtcgatt acctcggctt cctgcacgac tgcgacttca accagatgct
     3601 cggcctgccg ctcggcgggg gagggcgccc gcacctgcgc gacctcctgg tcgaggacgt
     3661 tgaagggcgc gagattcggg ttgccggaca ttgcttcggc tgcaccgccg gccagggttc
     3721 gagctgcggc ggggcgctga aggaggcggc cgagtgaggc tctcgatcgt cgttcccgtc
     3781 ctcgacgagg ccgaagggat cgcggcgcat ctctccgctc tggccccgct gcgggcgaac
     3841 ggggcggagg tcatcgtcgt cgacgggggc agcacggacg ccacttgcga gctcgccgga
     3901 ccgctggcgg accgcgtcgt cgtcgcgccc cggggccggg ccacgcagat gaacgcgggc
     3961 gcggcactcg cgtcgggtga cgtgctcctc ttcctgcatg cggatacgcg gctgccggcg
     4021 gacgcagacc ggctcatcgc ggccgcgttc accggcggag gcaggccgtg ggggcggttc
     4081 gatgtcgaga tcgagggccg gcatcccctg ctgcccctcg tcgcggggct catgaacctg
     4141 cgctcgcgcg tgacgggcat cgccaccgg
//
LOCUS       DASQWN010000339         2265 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1051341, whole genome shotgun sequence.
ACCESSION   DASQWN010000339 DASQWN010000000
VERSION     DASQWN010000339.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2265)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2265)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2265
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1051341"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..530
                     /locus_tag="VE686_06450"
     CDS             <1..530
                     /locus_tag="VE686_06450"
                     /EC_number="6.3.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009763430.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030272 - 5-formyltetrahydrofolate
                     cyclo-ligase activity [Evidence IEA];
                     GO_process: GO:0006730 - one-carbon metabolic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="5-formyltetrahydrofolate cyclo-ligase"
                     /protein_id="HYY84125.1"
                     /translation="RRDALDREVRRAAALAIRDRALELPELRDRQIVGAYWPIRSEVD
                     PRPLMRALIRRRQDVALSQILHPHLSWRLWRPGDVLIKGGFGVREPGPDAPECFPVAL
                     LVPLAAFDRQGHRLGYGKGHFDRAIAALSQKHPVLTVGLAYAAQEVDDVPAEPHDRGL
                     DFVVTERETIQPNVS"
     gene            533..1354
                     /locus_tag="VE686_06455"
     CDS             533..1354
                     /locus_tag="VE686_06455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003602928.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042578 - phosphoric ester hydrolase
                     activity [Evidence IEA];
                     GO_process: GO:0008152 - metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR00282 family metallophosphoesterase"
                     /protein_id="HYY84126.1"
                     /translation="MRLLFLGDIVGRPGRTAVTERLPALRERWLLDCVVINGENAAGG
                     FGLTEAICDEILAAGADAVTLGNHSFDQREALVFIERQPRLLRPANYPPGTPGRGATV
                     VEARNGARVLVVNAMGRLFMDALDDPFTAVDRELDACPLGSAADAVIVDFHAEATSEK
                     QAFGYHCDGRASMVVGTHTHAPTSDHRILPGGTAYMSDAGMCGDYESVLGMARDEPMR
                     RFLQKTPGSRLEPASGEGTLSGLAVETDDATGLALRIAAVRLGPTLEESRPSFWE"
     gene            1412..>2265
                     /locus_tag="VE686_06460"
     CDS             1412..>2265
                     /locus_tag="VE686_06460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012335523.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HYY84127.1"
                     /translation="MSRLAPQPDSAASWLRLLLALVLSTIGGVGMWSVVVALPAVQAD
                     FGSARAGASLPYTLAMIGFAVGGIGMGRLADRFGIAVPVAGSAVALALGYVAAAASPS
                     LTFFALAHGLLIGVASSATFGPMMADVSQWFVRRRGIAVAVCASGNYVAGTFWPPVLQ
                     HFFDTVGWRQTHLGIALFCVATMLPLAFLLRGTPPARIAPAAGAANDASPARLGLTSG
                     ALMTVLALAGVACCIAMAMPQVHIVAYCGDLGYGVARGAQMLSLMLGFGIISRLASGV
                     IADRIGGLP"
BASE COUNT          257 a          879 c          781 g          348 t
ORIGIN      
        1 cccgccggga cgccctcgac agggaggtcc gccgggccgc ggccctggcc attcgcgacc
       61 gggcgctcga gctgcctgag cttcgcgacc gccagatcgt cggcgcctac tggccgatcc
      121 gcagcgaggt cgatccgcgc ccgctcatgc gcgcgctcat ccgccgccgg caggacgtgg
      181 ccctttcgca gatcctccac ccccacctga gctggcgcct gtggcggccc ggcgacgtgc
      241 tgatcaaggg cggcttcggc gtgcgcgagc ccggccccga cgcgccggag tgcttccccg
      301 tagccctcct cgtgccgctg gccgccttcg accgccaggg ccaccggctc ggctacggca
      361 agggccactt cgaccgcgcc atcgcggcgc tctcgcagaa gcacccggtg ctcaccgtgg
      421 gcctggccta cgcggcccag gaggtcgacg acgtgccggc cgagcctcat gatcgcggcc
      481 tcgacttcgt ggtgaccgag cgcgagacga tccagccgaa cgtgagctag ccatgcgtct
      541 tctcttcctg ggcgatatcg tcggacggcc cgggcgcacc gccgtgacgg agcggctgcc
      601 ggcgctccgg gagcgctggc tcctcgattg cgtggtcatc aacggcgaga acgccgccgg
      661 cggcttcggc ctgacggagg cgatctgcga cgagatcctg gccgccggcg ccgacgccgt
      721 gacgctcggc aaccactcct tcgaccagcg cgaggcgctg gtgttcatcg agcgccagcc
      781 ccggctcctc cgcccggcca actacccgcc cggcacgccc gggcgcggcg cgaccgtcgt
      841 cgaggcccgc aacggcgccc gcgtgctggt ggtcaacgcc atggggcggc tgttcatgga
      901 cgccctcgac gacccgttca cggccgtcga tcgcgagctc gacgcgtgtc cgcttgggag
      961 cgccgccgac gccgtcatcg tggatttcca cgccgaggcg acgagcgaga agcaggcctt
     1021 cggctatcac tgcgacggcc gcgcctcgat ggtggtgggg acacatacgc acgctccgac
     1081 gtccgaccat cgcatcctgc cgggcggcac ggcgtacatg tcggacgccg gcatgtgcgg
     1141 cgactacgag tcggtgctcg gcatggcgcg cgacgagccc atgcggcggt tcctgcagaa
     1201 gaccccgggc tcgcgcctcg agccggcgag cggcgagggc accctgtcgg ggctcgccgt
     1261 cgagaccgac gacgcaaccg gcctcgcgct ccgcatcgcc gcggtgcgcc tcggcccgac
     1321 cctcgaggag agccgcccga gcttctggga gtagcccgcg tcggcttcgg gatgattgcg
     1381 cgccgccgtg cttagcggct actcaggcgc gatgtcccgc ctcgccccgc agcccgattc
     1441 cgccgcctcg tggctgcgcc tgctgctcgc cctcgtgctg agcaccatcg ggggcgtcgg
     1501 catgtggtcg gtggtcgttg cgctgccggc cgtgcaggcg gacttcggct cggcacgggc
     1561 cggcgcgtcg ctgccctaca cgcttgcgat gatcggattt gccgtcggcg gcatcggcat
     1621 gggccggctc gccgaccgtt tcggcatcgc cgtgccggtg gccggcagcg cggtcgccct
     1681 agccctcggc tatgtggcgg cggcggcgtc tccgagcctg accttcttcg ccctcgcgca
     1741 cgggctcctc atcggcgtcg cgagctcggc caccttcggg ccgatgatgg ccgacgtgtc
     1801 gcaatggttc gtgcgccgcc gcggcatcgc ggtcgccgtc tgcgcctccg gcaactacgt
     1861 cgccggcacc ttctggcccc ccgtcctgca gcacttcttc gacaccgtgg ggtggcgcca
     1921 gacgcacctt ggcatcgcgc tgttctgcgt cgccaccatg ctgccgctcg ccttccttct
     1981 caggggcacg ccgcccgccc gcatcgcgcc ggcggcaggc gccgccaacg acgcctcccc
     2041 ggcgcgcctc gggctcacgt ccggcgccct gatgacggtg ctggcgctcg cgggcgtcgc
     2101 ctgctgcatc gccatggcca tgccgcaggt gcacatcgtc gcctactgcg gcgacctcgg
     2161 ctacggcgtc gcgcgcgggg cgcagatgct gtccctgatg ctcggcttcg gcatcatcag
     2221 ccgcctcgcc tcgggcgtca tcgccgaccg catcggcggg ctgcc
//
LOCUS       DASQWN010000340         2637 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1051385, whole genome shotgun sequence.
ACCESSION   DASQWN010000340 DASQWN010000000
VERSION     DASQWN010000340.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2637)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2637)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2637
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1051385"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..535
                     /gene="rplB"
                     /locus_tag="VE686_06465"
     CDS             <1..535
                     /gene="rplB"
                     /locus_tag="VE686_06465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012589619.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="50S ribosomal protein L2"
                     /protein_id="HYY84128.1"
                     /translation="YILAPQRLQAGDKVVAAEQVDIKPGNAGPIGNMPVGTIVHNVEL
                     KIGKGGAIARSAGNYAQIVGRDQGWVTLRLNSGEQRLVHGQCFATVGAVSNPDHMNIS
                     LGKAGRNRWLGRKPHNRGVTMNPIDHPHGGGEGRTSGGRHPVTPWGKPTKGKKTRANK
                     RTDGMIVSSRHNRKKKG"
     gene            542..820
                     /gene="rpsS"
                     /locus_tag="VE686_06470"
     CDS             542..820
                     /gene="rpsS"
                     /locus_tag="VE686_06470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003547552.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000314 - organellar small ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S19"
                     /protein_id="HYY84129.1"
                     /translation="MARSLWKGPFVDGYMLKKAEAARGSGRNEVIKIWSRRSTILPQF
                     VGLTFGVYNGHKHIPVYVSEEMVGHKFGEFSPTRTFHGHAADKKAKRK"
     gene            823..1209
                     /gene="rplV"
                     /locus_tag="VE686_06475"
     CDS             823..1209
                     /gene="rplV"
                     /locus_tag="VE686_06475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018406016.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000311 - plastid large ribosomal subunit
                     [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L22"
                     /protein_id="HYY84130.1"
                     /translation="MGKAATPRALPENEAKAVARNLRVSPQKLNLVAQLIRGKTAANA
                     LADLEFSRKRIAKEVRKCLESAIANAENNHDLDVDDLVVSHAFVGKSLVLKRFHARAR
                     GRGARILKPFANLTIVVREVAAEQQA"
     gene            1220..1936
                     /gene="rpsC"
                     /locus_tag="VE686_06480"
     CDS             1220..1936
                     /gene="rpsC"
                     /locus_tag="VE686_06480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009764305.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000312 - plastid small ribosomal subunit
                     [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S3"
                     /protein_id="HYY84131.1"
                     /translation="MGQKVNPIGLRLGINRTWDSRWFARKGEYARLMHEDMAVRDALM
                     KQLKQAAVSKIVIERPHKKARVTIYSARPGVVIGKKGADIEKLRKLVNKMTNADVAIN
                     IVEVRKPEIDATLVADSIAQQLERRVAFRRAMKRAVQSAMRLGAEGIRINCSGRLGGA
                     EIARMEWYREGRVPLHTLRADVDYGTATAYTTYGTCGIKVWIFKGEILEHDPMAQDKR
                     LTDEGGRSGGRREREREQAA"
     gene            1968..2381
                     /gene="rplP"
                     /locus_tag="VE686_06485"
     CDS             1968..2381
                     /gene="rplP"
                     /locus_tag="VE686_06485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005973000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L16"
                     /protein_id="HYY84132.1"
                     /translation="MLQPKKTKFRKAFKGRISGTAKGGTDLNFGQFGLKALEPERVNA
                     RQIEAARRAITRQMKRQGRVWIRIFPDVPVSSKPTEVRMGKGKGAPEFWAARVKPGRI
                     MFEIDGVPEDIAREALRLGAAKLPIKTRFIQRIAE"
     gene            2396..2605
                     /gene="rpmC"
                     /locus_tag="VE686_06490"
     CDS             2396..2605
                     /gene="rpmC"
                     /locus_tag="VE686_06490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019403815.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L29"
                     /protein_id="HYY84133.1"
                     /translation="MKSTQRLSDIKAMSQDQLSDELLNLKKEQFNLRFQRATGQLENT
                     GRVREVRRDIARVRTLQRQSAGART"
BASE COUNT          522 a          885 c          881 g          349 t
ORIGIN      
        1 ctacatcctg gctccccagc gcctgcaggc cggggacaag gtggtggcgg ccgagcaggt
       61 cgacatcaag ccgggcaatg ccggtccgat cggcaacatg ccggtgggca ccatcgtcca
      121 caacgtcgag ctcaagatcg gcaagggcgg ggccatcgcg cggtccgcgg gcaactacgc
      181 ccagatcgtc ggccgcgatc aggggtgggt cacgctgcgc ctgaactcgg gcgagcagcg
      241 cctcgttcac ggccagtgct tcgccaccgt cggcgcggtg tcgaacccgg accacatgaa
      301 catctccctc ggcaaggccg ggcggaaccg gtggctcggg cgcaagccgc acaaccgcgg
      361 cgtcaccatg aacccgatcg accacccgca cggcggtggc gagggccgca cgtcgggcgg
      421 acgccacccg gtcaccccgt ggggtaagcc gaccaagggc aagaagaccc gggcgaacaa
      481 gcggactgac ggcatgatcg tctcgagccg ccataaccgc aagaagaagg gttaaacgac
      541 catggcgcgt tcgctctgga aggggccgtt cgtcgacggc tacatgctca agaaggccga
      601 ggcggcgcga ggctcgggcc gcaacgaggt gatcaagatc tggagccgtc gctccacgat
      661 cctgccgcag ttcgtcggcc tcacgttcgg cgtctacaac ggccacaagc acatccccgt
      721 gtacgtgtcc gaggaaatgg tgggccacaa gttcggcgag ttctcgccga cgcgcacctt
      781 ccacggccac gccgcggaca agaaggcgaa gaggaagtaa cgatgggcaa ggccgccact
      841 ccccgcgcgc tgcctgagaa cgaggccaag gcggtcgcgc gcaacctgcg cgtcagcccg
      901 cagaagctca acctcgtcgc gcagctgatc cgcggcaaga ccgccgcgaa tgcgctcgcc
      961 gacctcgagt tctcgcgcaa gcgcatcgcc aaggaggtgc gcaagtgcct cgagagcgcg
     1021 atcgccaacg cggagaacaa ccacgacctc gacgtcgacg atctcgtggt cagccacgcc
     1081 ttcgtcggca agtcgctcgt cctgaagcgt ttccatgcgc gagcccgcgg tcgcggtgcc
     1141 cgtatcctga agccgttcgc caacctcacc atcgtggttc gcgaagtcgc cgccgaacag
     1201 caggcgtgag gagcacctga tgggtcagaa agtaaacccg atcggtcttc ggctcggcat
     1261 caaccggacc tgggactcgc gctggttcgc ccgcaagggt gagtacgcca ggctcatgca
     1321 tgaggacatg gccgtccgcg acgcgctgat gaagcagctg aagcaggcgg cggtgtcgaa
     1381 gatcgtcatc gagcgcccgc acaagaaggc ccgtgtcacc atctactcgg cccggccggg
     1441 cgtggtgatc ggcaagaagg gcgccgacat cgagaagctg cgcaagctcg tcaacaagat
     1501 gacgaacgcc gacgtcgcga tcaacatcgt cgaggtgcgc aagcccgaga tcgacgccac
     1561 cctggtggct gattcgatcg cccagcagct cgagcgcagg gtcgccttcc gccgcgccat
     1621 gaagcgcgcc gtgcaatcgg cgatgcggct tggcgccgag ggcatccgca tcaactgctc
     1681 cggccgtctc ggcggcgccg agatcgcccg catggagtgg taccgcgagg gccgcgtgcc
     1741 gctgcatacg ctgcgcgccg acgtcgatta cgggaccgcg accgcctaca cgacctacgg
     1801 cacgtgcggc atcaaggtgt ggatcttcaa gggcgagatc ctcgagcacg atccgatggc
     1861 gcaggacaag cgcctcaccg acgagggagg ccgttccggc ggccgccgcg agcgtgagcg
     1921 cgagcaggcc gcgtaaagcg gccacaagag ggatttagag gttcgccatg ctgcaaccca
     1981 agaagaccaa gttccgcaaa gccttcaagg gccgcatcag cggcaccgcg aagggtggga
     2041 cggatctgaa cttcggccag ttcgggctca aggccctcga gccggagcgc gtcaacgcgc
     2101 gccagatcga ggccgcccgc cgcgccatca cgcgccagat gaagcgccag ggcagggtgt
     2161 ggatccgcat cttcccggac gtgccggtgt cgtcgaagcc gaccgaggtg cgcatgggca
     2221 agggcaaggg cgcgcccgag ttctgggccg cccgggtgaa gcccggccgc atcatgttcg
     2281 agatcgacgg cgtgcccgag gacatcgccc gtgaggcgct gcgcctcggt gcggcgaagc
     2341 tcccgattaa gactcgcttc atccagcgca tcgccgagta aggaggagga ctgagatgaa
     2401 atcgacccag cgcctctccg acatcaaggc gatgagccag gaccagcttt ccgacgagct
     2461 gctcaacctc aagaaggagc agttcaacct gcgcttccag cgggccacgg gacagctcga
     2521 gaacaccggc cgcgtgcgcg aggtccgtcg cgacatcgcc cgcgtccgca cgctgcagcg
     2581 ccagagcgcc ggcgctcgga cctaaggaga agacgatgcc gaaacgcgta ctccagg
//
LOCUS       DASQWN010000341         2355 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_128058, whole genome shotgun sequence.
ACCESSION   DASQWN010000341 DASQWN010000000
VERSION     DASQWN010000341.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2355)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2355)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2355
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_128058"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(457..1215)
                     /locus_tag="VE686_06495"
     CDS             complement(457..1215)
                     /locus_tag="VE686_06495"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY84134.1"
                     /translation="MSFRFLFTPFEELDAFLGGLLDGAPFLVALGIALLLGLRHASDP
                     DHLVAVTSLVAADDGDTRGAARLGTWWGVGHAVALIGLGVPLILFKTALPNWLGTGAE
                     KAIGVVILGLAARVIIKWIRGDYRGHAHAHDWSRPDRHGHRRHLRRGQHSDHRHVPVR
                     SRGQAALIGLLHGLAGTGAVVVLLIAALPNRLGAALALGIFASMSIASMAACTAVFAW
                     ALTRPIVEPLYRGVLIPGLGFFGVAFGLWYAGIG"
     gene            complement(1212..2327)
                     /locus_tag="VE686_06500"
     CDS             complement(1212..2327)
                     /locus_tag="VE686_06500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020179161.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="agmatinase family protein"
                     /protein_id="HYY84135.1"
                     /translation="MDDRRTREQIDRGIDLGLEASESVQDRTISLFSRGQQPAFAGIN
                     TFLKAPYCENIRDVGKYDVAIVGAPFDMGTTYRAGCRFGPQAVRRISALYDSYNADMG
                     VDLYEELNLCDAGDVFVIPSNIEKSFDQIDGAVSFVHKEGAFPVVIGGDHSIGYPDVR
                     AIAPLIEGRVGIVHLDRHIDMQERDMDERMHTTPWFHSTNIPNAPASNLVQMGIGGWY
                     GSRPGMKVARERRSTVITISDVEELGVEKAVEIALEYAWKDAEAVFLSFDIDSIDSGF
                     VPGTGSPEPGGLLPREALKALRMVAREGICGMEVVEIAPPYDVSDMTAQLGARAIMDV
                     LGTLVEEGHLGSRPSRQELERKEHEEREAKRRDEESE"
BASE COUNT          365 a          808 c          814 g          368 t
ORIGIN      
        1 ggcacggagt ctgccttcgg caaggggcac cgggccgcgc ctggcgccgt ccgacgtacg
       61 cggaattagc ctccccgcac ggcggcggcg ccggcccctt cgccgcgccc acttgaccga
      121 ggcggccggg ggctcagacg aggtcgccct cgtcgcgggg gcgccggcct cggggtgtac
      181 atctgtacac cgcccgtgat tgcatgggca acgaaccgaa ggttgggcag ttaggcgatg
      241 cgggccggcg ggtgctgcgg tgagtgggca tcgacgctcg aggattcgcc actacacgtg
      301 gggccgtccg tggggccaat ctgagcgaaa ctcacggcac ctgagccgat ctcaacggct
      361 ctggaatgcg ggggcgagcg tcatcgcacc tccgggctgg tgttcgagcc cagtaccgcc
      421 catcgttgac ccgtcgacga ttcgccgtcg cgagactcat ccgattcccg cgtaccacag
      481 gccgaacgcg acgccgaaga acccgaggcc cgggatcagc acgccgcggt agagcggctc
      541 gacgattgga cgagtcagcg cccaggcgaa gaccgcggtg cacgccgcca tcgaggcgat
      601 cgacatggag gcgaagatgc cgagcgcaag tgctgccccc agccggttcg gcagtgcagc
      661 gatcagcagc accaccacgg cccccgttcc ggcgaggccg tgtaggagtc cgatcaaggc
      721 ggcctgtccg cggcttcgga ccgggacgtg ccgatggtcg gaatgttgcc cgcgccgcag
      781 gtgtcgccga tggccgtggc ggtccggtcg gctccagtcg tgcgcgtgcg cgtgtccccg
      841 gtagtccccg cgaatccatt tgatgatcac gcgcgcagcc aggcccaaga tcaccacgcc
      901 gatggccttc tctgctccgg tccccagcca gttcggcagt gcggtcttga agaggatcag
      961 cgggaccccg agtccgatca gcgccaccgc gtggccgacc ccccaccatg tcccgagacg
     1021 cgcggcgccc cgcgtatcgc catcgtccgc cgccactagc gacgtgacgg cgacgaggtg
     1081 gtccgggtct gacgcgtggc ggagcccgag cagcagggcg atccccagcg cgacgaggaa
     1141 cggcgcgccg tcgaggaggc ccccgaggaa tgcatccagc tcctcgaaag gcgtgaagag
     1201 aaaccggaag ctcattcgga ttcttcgtca cgccgcttgg cttcgcgttc ctcgtgttcc
     1261 ttgcgctcca gctcctggcg gctgggccgg ctgccgaggt ggccctcctc gaccagcgtg
     1321 ccgagcacgt ccatgatcgc ccgcgcgccg agctgggcgg tcatgtcgga gacgtcgtag
     1381 ggcggcgcga tctcgaccac ctccatcccg cagatgccct cgcgggcgac catgcggagc
     1441 gccttgagcg cctcgcgcgg cagcagaccg cccggctccg gcgagccggt gcccggcacg
     1501 aaaccggagt cgatcgagtc gatgtcgaac gataggaaga ctgcctccgc gtccttccag
     1561 gcgtactcga gcgcgatctc gacggccttc tcgacaccga gctcctcaac atctgaaatc
     1621 gtgatcacgg tgctgcgccg ctcacgcgcc accttcatcc cgggccgcga gccgtaccag
     1681 ccgccgatcc ccatctgcac gaggttgctg gcgggcgcgt tcgggatgtt ggtcgagtgg
     1741 aaccacggtg tcgtgtgcat gcgctcgtcc atgtcgcgtt cctgcatgtc gatgtggcgg
     1801 tcgaggtgga cgatcccgac tcgcccctcg atgagcgggg cgatcgcgcg cacgtccggg
     1861 tagccgatcg agtggtcgcc gccgatcacg accgggaagg cgccctcctt gtggacgaag
     1921 gagaccgccc cgtcgatctg gtcgaacgac ttctcgatgt tcgaggggat cacgaagacg
     1981 tcgccggcgt cgcagaggtt gagctcctcg tacaggtcga cccccatgtc cgcgttgtag
     2041 gagtcgtaga gagcggagat gcggcgcacc gcctgcgggc cgaagcggca gcccgcccgg
     2101 taggtcgtgc ccatgtcgaa gggagcgccg acgatcgcca cgtcgtactt gccgacgtcg
     2161 cggatgttct cgcagtaggg cgccttgagg aaggtgttga tgccagcgaa cgccggctgc
     2221 tggccgcgcg agaacagcga gatcgtgcgg tcctgcaccg attccgacgc ctccagcccg
     2281 aggtcgatgc cgcggtcgat ctgctcgcgg gtgcggcggt cgtcgatccc ctcgagccgc
     2341 ttgagggcct gcgtt
//
LOCUS       DASQWN010000342         2153 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1051832, whole genome shotgun sequence.
ACCESSION   DASQWN010000342 DASQWN010000000
VERSION     DASQWN010000342.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2153)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2153)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2153
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1051832"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..972)
                     /locus_tag="VE686_06505"
     CDS             complement(<1..972)
                     /locus_tag="VE686_06505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020095866.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding protein"
                     /protein_id="HYY84136.1"
                     /translation="MNAPLTAQRSRPDEATVAAITAELHKRFGNRAVTSLAVREQHGH
                     TTTWIPNQPPDVVVYPETTEEVADIVRLCSAYEVPVVPFGTGTSLEGHVNAPFGGVCV
                     DTSGMKRIVAVHDEDLDCVVEPGVTRKQLNEHLRDMGLFFPIDPGADASIGGMAATRA
                     SGTNAVRYGTMKDNVVSLTVVTPVGDVVKTARRAKKSSAGYDLTRLFVGSEGTLGIIT
                     EITLKLHGIPEAISGGICPFPSVRAACDAVIVTIQSGIPVARIELLDEVQIRGVNLHS
                     KLGLPEVPMLFLEFHGTEASVAEQSQRFGEIATEYGGGPFEWATKAED"
     gene            complement(1075..2040)
                     /locus_tag="VE686_06510"
     CDS             complement(1075..2040)
                     /locus_tag="VE686_06510"
                     /inference="COORDINATES: protein motif:HMM:NF016292.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HYY84137.1"
                     /translation="MRRRTFLLGCVVATIPGGAIAQGNPRKIGFVSWFSPELASQVEQ
                     FRNGMRDLGYVERRDFTLETHFTGADANRTREVVRKMVGEKVDIIVAVVSPAIEIAKQ
                     EAGSLPIVMASVADPIGAGFAQSLSRPGGNLTGRTMFGPELAAKRIDLLRDIRPNLRT
                     VAFLGSSAAQSTPRFVREMQAATDRTGLKLVVHLIGGPKAIDAAVFEAMRRDGAEAVV
                     VHPIFTTYQALIMPLADAAGMPVVADYAEFADAGAVLTYGIDLDANLRRAAYFVDRIF
                     KGASPADLPIEQPTETKLVVNLPVAKRFGWAIPPTILVSADRVIE"
BASE COUNT          328 a          730 c          728 g          367 t
ORIGIN      
        1 gtcctccgcc ttggtcgccc actcgaaggg tcccccgccg tactccgtcg caatctcgcc
       61 gaagcgctgc gactgctcgg cgacgctcgc ctcggtgccg tggaactcga gaaacagcat
      121 cggcacctcg gggaggccga gcttggagtg caggttcacg ccccggatct gcacctcgtc
      181 gaggagctcg atgcgggcca ccgggatgcc cgactggatc gtcacgatga cggcgtcgca
      241 agcggcccgc accgacggga acgggcagat gccgcccgaa atggcttccg ggatgccgtg
      301 gagcttgagc gtgatctcgg tgataattcc aagcgtgccc tccgagccga cgaacaggcg
      361 cgtgaggtcg tacccggccg aactcttctt tgcgcggcgc gcggtcttca ccacgtcgcc
      421 gaccggcgtc accaccgtga gggagacgac gttgtccttc atggtgccgt agcgcacggc
      481 gttggtgccg ctcgcccgcg tcgccgccat gccgccgatg gaggcgtctg cgccggggtc
      541 gatcgggaag aacaggccca tgtcgcgcag gtgctcgttg agctgcttgc gcgtgacgcc
      601 cggttcgacg acgcagtcga ggtcctcatc gtgcacggcg acgatgcgct tcatgccgct
      661 ggtgtcgacg cagaccccac cgaaaggcgc gttgacgtgg ccctccagcg acgtacccgt
      721 gccgaacggc accaccggga cctcgtaggc gctgcacagg cgtacgatgt cggcgacctc
      781 ctcggtcgtc tccggataga ccaccacgtc gggcggctgg ttcgggatcc aggtcgtcgt
      841 gtgcccgtgc tgctcgcgca ccgcgaggct cgtcacggcg cggttcccga agcgcttgtg
      901 cagctcggcc gtgatggccg cgaccgtcgc ctcgtccggg cgggagcgct gggccgtgag
      961 aggtgcgttc atgagtgcag tccgtcgggt gtagcggagg tcgcgagttg ccggcgaccc
     1021 ttatcaaact cgggcgctcc ggaatacctg cgccgagccc ggatggcggc tgaactattc
     1081 gatgacccgg tcggcgctga ccaggatggt cggtgggatc gcccagccga aacgcttggc
     1141 gaccggcagg ttgacgacga gcttcgtttc cgtcggttgc tcgatcggca ggtccgccgg
     1201 gctcgccccc ttgaagatcc ggtccacgaa gtacgcggcc cggcgcaggt tcgcgtcgag
     1261 atcgatgcca taggtcagca cggcgccggc gtcggcaaac tccgcgtaat ccgccacgac
     1321 cggcattccg gcagcatcgg ctagcggcat gatcagcgcc tggtacgtcg tgaagatcgg
     1381 atggacgact acggcttcgg ctccgtcccg ccgcatggcc tcgaataccg cggcatcgat
     1441 tgctttcgga ccgccgatga gatggaccac cagcttcaga ccggtgcggt cggtcgcggc
     1501 ctgcatttcg cgcacgaacc tgggcgtgct ctgggcagcc gatgagccca ggaaagcgac
     1561 cgtgcggaga ttcggcctga tgtcgcgcag gaggtcgatg cgcttggcgg ccagctccgg
     1621 tccgaacatg gtgcggccgg tcagattgcc ccctgggcgg gacaggctct gggcgaaacc
     1681 ggccccgatc gggtcggcca cgctcgccat cacgatgggc agggagccgg cctcctgctt
     1741 ggcgatttcg attgccggcg acacgacggc gacgatgatg tcgaccttct ccccaaccat
     1801 ctttcggacg acctcccgcg tgcggttcgc gtcggcgccc gtgaagtgcg tctcaagggt
     1861 gaaatcccgt ctttcgacgt agccgaggtc gcgcataccg ttccggaact gctcgacctg
     1921 cgaggctagc tcgggcgaga accagctcac gaaaccgatc ttccgcgggt tcccctgcgc
     1981 gatggcgccg cccggaatcg tcgccacgac gcatccgagc aggaaggtcc ttcgcctcat
     2041 cggatcacct cactccgtgg cctatcgtga tgaaggcgcg cgcctggcgc cgcctggtgc
     2101 cgcagcttcc tccaggcgca gtgcctctgc aacgtccgag gcccgccgcc gag
//
LOCUS       DASQWN010000343         2098 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_525147, whole genome shotgun sequence.
ACCESSION   DASQWN010000343 DASQWN010000000
VERSION     DASQWN010000343.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2098)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2098)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2098
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_525147"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1219
                     /locus_tag="VE686_06515"
     CDS             <1..1219
                     /locus_tag="VE686_06515"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013504412.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="glycosyltransferase family 4 protein"
                     /protein_id="HYY84138.1"
                     /translation="GAGARRGDVASRTGVMNVRYAPATLAAAPSRADTRPRVMLIQTQ
                     AENAGAQEISRILAEGLTARGYDVRQLFFFRRTDAFDADPTAAFCVPSRPSGPLSLLR
                     FLWRLPAEIRAFRPDVVLCFQHYGNVIGAPVARLAGAARIIANQNSATLTAPAWARHA
                     DRWIGTLGAFTSIVVPSRDSETEYAGYPARYRERLVRIGHGFEGKASPLGKPEARARL
                     GLPVGATLLGCVARLHPLKHLDAAVRLLAREPAWSLAIAGQGPDRAELIALATSLGCA
                     GRLHLVGELPRAAVGDFLAALDVFVFPSKAETFGLAVVEAAQAGVPTVANDIPVMREV
                     LAVDGAPCALIVDVADAEAFAEAVRTLLSNAELARTLSERARGLARRFPLDGMIDAYE
                     GLILECLATPPRP"
     gene            1192..>2098
                     /locus_tag="VE686_06520"
     CDS             1192..>2098
                     /locus_tag="VE686_06520"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY84139.1"
                     /translation="MPRNAAAAMNIEIVVDGSRLRTWHTQLGMRLGSGPEARVGLRVA
                     DGPPLPSAVELLLSLEQLVHRRPTGRMAARAQVNGAERLESEDVDVTIDLTGRAESRG
                     RRTLRVRYDGVPDEGAIFAALLDGQVPVIEVEDVATGATVARGLASTENAGTIGEAYE
                     EVVARTANVLAAALRRPCDLTNGPFEGRRGANAKAIARYAARSLAFNAARKLYRLCCR
                     APHWRVGWRMVGDHDVWDTQSLAGPTWANLPDPGLHFYADPFPILRDGSFTVFVEDFD
                     HRTQKGCISAVPFGEHGPTGPAVPVL"
BASE COUNT          283 a          787 c          699 g          329 t
ORIGIN      
        1 cggcgcagga gcccgccgcg gcgacgtggc ttcgcggacc ggcgtgatga acgtgcgata
       61 cgctcccgcg accctggccg ccgcgccgtc ccgggccgac acgcggccgc gggtcatgct
      121 catccagacg caggccgaga atgccggcgc gcaggagatc tcgcgcatcc tcgccgaggg
      181 cctgacggcc cgcggctatg acgtccggca gcttttcttt ttccgccgca ccgacgcctt
      241 cgatgccgat ccgacggcgg ccttctgcgt gccgagccga ccctcggggc cgctctcgct
      301 cctacgcttc ttgtggcggc tgcccgcgga aatacgcgcg ttccgtccgg acgtggtgct
      361 ttgcttccag cactacggca acgtcatcgg cgcgcccgtc gcgcgcctcg ccggcgcggc
      421 gcggatcatc gccaaccaga actccgcaac cctgacggcg cccgcttggg cgcggcacgc
      481 cgaccgatgg atcgggaccc tcggtgcgtt cacgagcatc gtcgtcccct cgcgcgattc
      541 cgaaacagag tatgcgggct acccggcccg ctatcgcgag cgcctcgtcc gcatcggcca
      601 tggcttcgag ggcaaggcga gccccctagg gaagcccgaa gcgcgcgcgc ggctcgggct
      661 gcctgtcggc gccaccctcc tcggctgcgt cgcgcgcctt catccgctga aacacctcga
      721 cgccgccgtc cgtctcctcg cccgcgagcc cgcctggtcc cttgccattg ccgggcaagg
      781 ccccgaccgg gcggagctca tcgcgctggc cacgtcactc ggctgcgccg ggcgcctgca
      841 cctcgtcggc gagctgccgc gggctgccgt gggcgacttc ctggccgcac tggacgtgtt
      901 cgtgtttccc tcgaaagccg agacgttcgg gctcgcggtc gtggaagcgg cgcaggccgg
      961 cgtcccgaca gtcgcaaacg acatccccgt catgagggag gtccttgccg tcgacggcgc
     1021 gccttgcgcg cttatcgtgg acgttgccga cgccgaagcc ttcgccgagg cggtcaggac
     1081 gctcctgagc aatgcggaac tcgcccgaac cctgtccgag cgcgcccgtg gcctcgcccg
     1141 gcgcttcccg ctcgacggca tgatcgacgc gtacgagggc ctcatcctcg agtgcctcgc
     1201 aacgccgccg cggccatgaa catcgagatc gtcgtcgacg gctcgcgctt gcgaacgtgg
     1261 catacccagc tcggcatgcg gctcggctcc ggtcccgagg ctcgggtcgg gcttcgcgtc
     1321 gcggacgggc cgcccctccc gtcggctgtc gagctgctcc tcagcctcga gcagcttgtg
     1381 caccggcgcc ccacggggcg tatggccgcg cgcgcgcaag tcaatggagc ggagcgactc
     1441 gagagcgaag acgtcgacgt caccatcgac ctgacgggcc gggcagaatc cagaggccgg
     1501 cgtacgcttc gagtacggta cgacggcgtc cccgacgagg gcgccatttt tgcagctttg
     1561 ctcgacgggc aggtgcctgt catcgaggtg gaggacgtcg ccacaggcgc cacggtcgcc
     1621 cgcggccttg cctcgaccga gaatgccggg accatcggcg aagcatacga ggaggtggtg
     1681 gcccgcaccg ccaacgtcct cgctgccgcc ctgcgccgcc cgtgcgatct cacgaacggc
     1741 cccttcgaag ggcgccgtgg ggcaaacgcc aaggccatcg cccggtacgc ggcccgctcg
     1801 ctcgccttca acgccgctcg caagctctac cgcctgtgct gccgggctcc ccattggcgg
     1861 gtcgggtggc gcatggtcgg cgatcacgac gtctgggaca cgcagagtct ggccgggccc
     1921 acttgggcga atcttcccga tccggggcta cacttctacg ccgatccctt tcccatcctg
     1981 cgggatggca gcttcacggt gttcgtcgag gacttcgacc atcgcaccca aaagggctgc
     2041 atctcggctg tgccgttcgg cgagcacgga ccgacggggc cggccgtccc ggtgctcg
//
LOCUS       DASQWN010000344         2697 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1052265, whole genome shotgun sequence.
ACCESSION   DASQWN010000344 DASQWN010000000
VERSION     DASQWN010000344.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2697)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2697)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2697
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1052265"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(280..870)
                     /locus_tag="VE686_06525"
     CDS             complement(280..870)
                     /locus_tag="VE686_06525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014526920.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdeI/OmpD-associated family protein"
                     /protein_id="HYY84140.1"
                     /translation="MPEKKDTLPVIGFSSIEEWNAWLDAQPRTSSGAWLKLAKAASRR
                     ASISRQEAIDGALCHGWIDGQLKPYDDAHWLVRFTPRRRASKWSQVNRDRALELMGLG
                     RMTAAGLDEIERARRDGRWDAAYAPQSKATVPPDLQAALDANPAAQRHFDHLDSRNRY
                     AVLYRVHEAKKSETRAQRIARFVDMLSRGESIYPPK"
     gene            complement(902..1708)
                     /locus_tag="VE686_06530"
     CDS             complement(902..1708)
                     /locus_tag="VE686_06530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012335801.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta fold hydrolase"
                     /protein_id="HYY84141.1"
                     /translation="MPTRDEAIEIRVDDQAIAGTIVAPTRAMPGVLFVHGWGGSQEHY
                     IARAREISALGCVCLTIDLRGHGATEDQHPTVTREENLRDVVAAYDGLSRRPGVDRNA
                     IGVVGSSYGGYLATILSAMRPVRWLALRVPALYKDEDWALPKVELKKYGLDAFRRGPV
                     SPDENRALAACAAFEGDVLIVESEHDDIIPHPVISNYVAAFARAHSLTYRVIAGADHQ
                     LSDPAWQEAYTSLLVNWATEMVLGAREEGAASAVHTRTSPAPHRGPATPA"
     gene            complement(1692..>2697)
                     /locus_tag="VE686_06535"
     CDS             complement(1692..>2697)
                     /locus_tag="VE686_06535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015928890.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF3182 family protein"
                     /protein_id="HYY84142.1"
                     /translation="GYAFSGEYDRGKSCAGPLYFAPGDTLVGQEAAALGIASEHDLFG
                     GVVPHAFAATKVISHPLVDRSAAAPLGWTHAFAERVGDAVLSGFSVFSREDARVAGRR
                     LLEHGPARVKPVHETGGRGQTVVATPAELDAVVAALDEDELARDGLVIEENLTEVTTY
                     SVGLVRVADLVASYHGTQALTRANDGMQVYGGSRLEVVRGDFEALLALDLDNDTRLAV
                     TQARTYDAAASELFPGLFASRRNYDIARGRDAQGRWRCGVLEQSWRIGGASGAEIGAL
                     EAFRADPSLTRVRAETVEIYGADAPPPPAGATVYFRGTDERVGPLTKYAVVERHADPG
                     "
BASE COUNT          385 a          900 c          991 g          421 t
ORIGIN      
        1 ggggccgagc ttgaggacct gcggggctcg gccggtggtc gcgagggcga cgagggttag
       61 ggcaacgtgg agtgacaatc ggaggcgctg ggccatggcg gtgctcgctc ttggtgagcg
      121 gcgacaaggc ctccaacccg taaagagaac ctctcgaatt gtagttaatc ggcgggcctc
      181 gcgcgggcgg cttgcgatgc gctcaggccg gggtcgcggg accgcggtgg gcggccgcgg
      241 gctcgtgcgg gtgtggacgg ccgaggcgag cggcaagcac tattttggcg ggtagatcga
      301 ctcgccgcgg ctgagcatgt ccacgaacct ggcgatccgc tgcgcgcgtg tttccgactt
      361 cttcgcctcg tgcacgcggt agagaaccgc ataccggttc cggctgtcga ggtgatcgaa
      421 gtgccgctgc gccgccgggt ttgcgtcgag ggcagcctgg agatcaggtg ggacggtcgc
      481 tttgctctgt ggagcgtaag ccgcgtccca gcggccatcg cgtctagcgc gctcgatctc
      541 gtccagacct gcggccgtca tgcgaccgag ccccatcagt tcgagagctc tgtcccggtt
      601 cacctgagac cacttgctgg cgcggcgacg tggggtgaag cgaacgagcc aatgcgcgtc
      661 gtcgtagggc ttcaactggc cgtcaatcca gccgtggcag agtgctccat cgatggcctc
      721 ttgcctcgag atggaagccc tacgcgaggc cgcctttgcc agcttcagcc acgctccgct
      781 ggaagtccgc ggctgtgcat caagccacgc gttccactcc tctatcgagg agaacccgat
      841 cacggggaga gtgtctttct tctccggcat gctccagacc ggggttcctg agcggctgcg
      901 ctcacgccgg cgtcgcgggg ccgcggtggg gggcggggct ggtgcgcgtg tgcacggctg
      961 aagccgcccc ttcctcgcgg gcgccgagca ccatttcggt cgcccagttg acgaggaggg
     1021 aagtgtaggc ctcctgccac gccggatcgg agagctggtg atcggcgccc gcgatcacgc
     1081 ggtaggtcag ggagtgcgcg cgcgcgaagg cggcgacgta gttcgagatc accgggtgcg
     1141 ggatgatgtc gtcgtgctcg gattcgacga tgagcacgtc gccctcgaac gccgcgcagg
     1201 ccgcgagcgc ccggttctcg tcggggctca ccgggccgcg gcggaaggcg tcgaggccgt
     1261 acttcttcag ctcgaccttc ggcagcgccc agtcctcgtc cttgtagagc gcgggcacgc
     1321 gtaacgcgag ccagcgcaca ggccgcatgg cgctcaggat cgtcgcgaga tagccgccgt
     1381 agctgctgcc gacgaccccg atggcgttgc ggtcgacgcc ggggcggcgg ctcaggccgt
     1441 cgtaggcggc gaccacgtcg cgcaggttct cctcgcgcgt cacggtcggg tgctggtcct
     1501 cggtcgcgcc gtggccgcgc agatcgatgg tgaggcagac gcagccgagc gccgagatct
     1561 cgcgcgcgcg ggcgatgtag tgctcctgcg acccgcccca gccgtggacg aagaggacac
     1621 ccggcatggc cctcgtcggc gcgacgatgg tcccggcgat ggcctggtcg tcgacgcgga
     1681 tctcgatcgc ctcatcccgg gtcggcatgg cgctccacca cggcatattt ggtcagcggc
     1741 ccgacgcgct cgtcggtccc gcgaaagtac accgttgcgc ccgccggggg agggggtgcg
     1801 tcggcgccgt agatctcgac ggtttcggcc cggacacggg tgagcgaggg gtcggcgcga
     1861 aaggcctcga gggcgccgat ctcggcaccg ctcgcgccgc cgatgcgcca cgactgctcg
     1921 agcacgccgc agcgccagcg cccctgcgca tcgcgcccgc gggcgatgtc gtagttgcgg
     1981 cgcgacgcga agagcccggg gaagagctcg ctcgccgccg cgtcgtacgt ccgcgcctga
     2041 gtgacggcga ggcgcgtgtc gttgtcgagg tcgagggcga gcagcgcctc gaagtcgccg
     2101 cgcaccacct cgagccgcga gccgccgtag acctgcatgc cgtcgttggc gcgcgtgagc
     2161 gcttgcgtgc cgtggtagct cgcaacaagg tcggcgacac gcaccagccc gacgctgtag
     2221 gtcgtcacct ccgtcaggtt ttcctcgatg acgaggccgt cgcgcgcgag ctcgtcctcg
     2281 tcgagcgcgg cgacgacggc gtcgagctcc gccggggttg cgaccacggt ttgcccgcga
     2341 ccgccggtct cgtgcaccgg cttcacccgc gcgggcccgt gctcgagcag ccggcgtccg
     2401 gcgacacggg cgtcctcccg cgaaaacacc gagaagccgg agaggaccgc gtcgccgacg
     2461 cgttcggcga aagcatgcgt ccagccgagc ggcgcggcgg cgctcctgtc gacgagcgga
     2521 tgcgagatca ccttggtcgc cgcgaaagcg tggggcacga ccccgccgaa caggtcatgt
     2581 tcggaggcga tcccgagcgc cgccgcctcc tggcccacga gggtatcgcc cggggcaaag
     2641 tagagtgggc cggcgcacga tttgccacgg tcgtattcgc ccgagaaggc atatccc
//
LOCUS       DASQWN010000345         2510 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1350758, whole genome shotgun sequence.
ACCESSION   DASQWN010000345 DASQWN010000000
VERSION     DASQWN010000345.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2510)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2510)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2510
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1350758"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..381)
                     /locus_tag="VE686_06540"
     CDS             complement(<1..381)
                     /locus_tag="VE686_06540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009490719.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Fur family transcriptional regulator"
                     /protein_id="HYY84143.1"
                     /translation="MDGGAAPPYTLHNQVRTSVAADRNGTKARRTADSIERACRAKGL
                     RITGPRRVIARVIGEAEDHPDVVELHRRAAALDRGISLSTVYRTVKLLENEGIIERLD
                     FRGERSRYERAPPEHHDHLIDIDSG"
     gene            complement(388..876)
                     /locus_tag="VE686_06545"
     CDS             complement(388..876)
                     /locus_tag="VE686_06545"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012333181.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0016747 - acyltransferase activity,
                     transferring groups other than amino-acyl groups [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HYY84144.1"
                     /translation="MRLREWLASPARAHVAPLDTRHAEALAEIHAGAFARPWSAVEFE
                     RMLADDHVTADGLFVVPRNLEPGGFVLSRRVGDEAEILSVAIAPDLRGRNCGRPLLAG
                     HLESLAREGVRRIHLEVEEGNVRALALYRRVGFQEVGRRVGYYLKPDGSRATALTMSR
                     PL"
     gene            complement(873..1556)
                     /gene="tsaB"
                     /locus_tag="VE686_06550"
     CDS             complement(873..1556)
                     /gene="tsaB"
                     /locus_tag="VE686_06550"
                     /EC_number="2.3.1.234"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012333182.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003725 - double-stranded RNA binding
                     [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     dimerization subunit type 1 TsaB"
                     /protein_id="HYY84145.1"
                     /translation="MRILAIDTALAACAACVLASGEDVPAAHETIAMERGHAEALLPL
                     VDRVVSSVAGGFAALDRVAVTVGPGTYTGLRVGISAARAIGLAAGIPVVGVTTLSALL
                     APLVGPEHRRLAAAAIDARHGHVYFQAVAPGGRSIVAAGLLPIRDAVRLIGSGPVVLT
                     GSGAPLVAAEALACGVDATVYDAPVAPDIALVAKLGLVADPAHALPKPLYLRGPDARP
                     QDHARIARQ"
     gene            complement(1638..2198)
                     /locus_tag="VE686_06555"
     CDS             complement(1638..2198)
                     /locus_tag="VE686_06555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006160497.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NifU family protein"
                     /protein_id="HYY84146.1"
                     /translation="MFIQTEATPNPATLKFLPGRIVLPEGTFDARDATGASDSPLAQR
                     LFAIPGVAGVFFGYDFITITRGEGEWQHLKPAVLGAIMEHFMSGAPILISATTAEAEA
                     GEEFFDTADAATVETIKELLETRIRPAVAGDGGDITFRGYRDGVVYLAMKGACSGCPS
                     STATLKHGIQNLLRHFLPDVREVEAV"
     gene            complement(2309..>2510)
                     /locus_tag="VE686_06560"
     CDS             complement(2309..>2510)
                     /locus_tag="VE686_06560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015930937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="universal stress protein"
                     /protein_id="HYY84147.1"
                     /translation="EPATEILEVIRDDEDIAFLVLAAGSGGEGPGPLVSAIAGQAAAA
                     FPIPVVIVPGGLSDEEIDALAG"
BASE COUNT          407 a          856 c          871 g          376 t
ORIGIN      
        1 cccgctatcg atgtctatga ggtggtcatg atgctcgggc ggcgcccgct cgtagcgtga
       61 gcgttcgccg cgaaagtcga ggcgctcgat gatgccctcg ttctctagaa gctttacggt
      121 gcgatagacg gtcgaaagcg agatcccgcg gtcgagcgcg gccgccctgc gatgcagttc
      181 gacgacgtcc gggtggtcct cggcctcgcc gatcacgcgc gcgatcactc gccgcggtcc
      241 ggtaatgcgc aaccccttcg cgcggcaggc tcgttcgatg gagtccgccg tccgccgcgc
      301 cttagttccg ttcctgtcgg ccgccacgct cgtcctgacc tggttgtgca gggtatacgg
      361 aggagcggcg ccgccgtcca tggcgggcta gagcgggcgg ctcatggtga gggccgtcgc
      421 tcgcgagccg tccggcttga gataatagcc cacccgccgt ccgacttctt gaaagccgac
      481 gcggcggtag agcgcgagcg cgcggacgtt cccctcctcc acctccagat ggattctgcg
      541 cacgccctcc cgcgcgagac tttcgagatg gcccgcgagc aacggtcgcc cgcagttccg
      601 gccccggaga tcgggagcga tcgccacgct gaggatctcg gcttcgtctc cgacccggcg
      661 cgacagaacg aaacccccag gctccagatt tcgcgggacg acgaacaggc cgtctgccgt
      721 gacatggtcg tccgccagca tccgctcgaa ctcgacggcg ctccatggcc gggcgaatgc
      781 gcctgcgtgg atctccgcca gggcctccgc atgacgcgta tcgagggggg cgacatgagc
      841 gcgcgcaggc gatgccagcc actcccgcag cctcattggc gtgcgatccg ggcgtgatcc
      901 tgagggcgtg cgtccggccc acgcaggtac agcggcttcg gtaacgcatg cgccgggtcg
      961 gcgacgaggc cgagcttggc gacaagcgca atgtcgggcg cgaccggagc atcgtacact
     1021 gtggcgtcga ccccgcacgc cagggcctcg gccgccacga ggggcgcgcc cgatccggtc
     1081 aggacgacgg gcccggaccc gatgagccgc acggcgtctc tgatagggag tagccccgcg
     1141 gcaacgatgg agcgcccgcc gggcgccacc gcctggaagt agacgtggcc gtggcgtgca
     1201 tcgatagccg ctgccgcgag ccggcggtgc tcgggcccga ccagaggggc gagcaaggcc
     1261 gaaagtgtgg tcacgccgac gacggggatg ccggccgcga gaccgatcgc ccgcgccgcc
     1321 gagatcccca cccgcaaccc cgtgtaggtc ccgggcccta ccgtgacggc aacgcggtcg
     1381 agggcggcga agccacccgc gacggaggac acgacgcggt ccacgagggg cagaagcgcc
     1441 tcggcatggc cgcgctccat cgcgatggtt tcatgcgctg ccgggacgtc ttcaccgctc
     1501 gcgagcacgc aggctgcgca agccgcaagc gccgtatcga tggcgagaat ccgcactgag
     1561 ctgggcctct gctcgcgccg tgaagtatgg cgcgaagcta gcttagcggg tcggagtgcc
     1621 gcccggaacc aggcagacta gacagcctcg acctcgcgca catctggcag gaagtgccgc
     1681 agcaggttct ggatgccgtg cttcagggtc gccgtggacg acggacagcc tgagcacgcc
     1741 cccttcattg cgaggtaaac gacgccgtcg cgatagcccc ggaacgtgat gtcgccgccg
     1801 tccccggcga cggccgggcg gatgcgggtc tcaagcaact ccttgatagt ctcgacggtg
     1861 gcggcgtccg cggtgtcgaa gaactcctcg ccggcctccg cttcggccgt cgtcgccgag
     1921 atcaggatcg gcgcgccgga catgaagtgc tccatgatgg cgccgaggac cgctggcttc
     1981 aggtgctgcc actcgccctc gcccctcgtg atggtgatga agtcgtaccc aaagaacacg
     2041 ccggcgacgc ccggaatggc gaaaaggcgc tgcgcaagcg gcgaatcgct agcgcccgta
     2101 gcatcgcggg cgtcgaaggt gccctcaggc agaacgatcc tgccgggcaa aaatttcaag
     2161 gtcgcggggt tcggcgtggc ttcggtctgg atgaacatcg gtctcgtcct cctcgagccg
     2221 gttcaaggcc ggcccaggct aaggctcgcg ctgtaacacg acgttgggga tgtggggatt
     2281 tacgacccgg aaatccaggc gggggccctc agcccgcgag cgcgtcgatc tcttcgtccg
     2341 acaggccacc tgggacgatg accaccggga tcgggaaggc ggccgcggcc tgcccggcga
     2401 tggcgctcac caaaggcccg ggtccctcgc cgcctgatcc ggcggcgagc actaggaaag
     2461 cgatgtcctc gtcgtcgcgg atcacctcga ggatctcggt cgcaggttcg
//
LOCUS       DASQWN010000346         2099 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1351050, whole genome shotgun sequence.
ACCESSION   DASQWN010000346 DASQWN010000000
VERSION     DASQWN010000346.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2099)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2099)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2099
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1351050"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..999)
                     /locus_tag="VE686_06565"
     CDS             complement(<1..999)
                     /locus_tag="VE686_06565"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018318496.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase family protein"
                     /protein_id="HYY84148.1"
                     /translation="MDFSLSPEQAATRDLVEKVCAPFDDGYWLARDQDAQFPHAFYRA
                     VADAGLLGIAMPEAFGGSGLGIAEAAVMMQAIAESGAGMGGASAVHMNIFGLNPVVVF
                     GTEEQKARMLPPLIRGEEKACFAVTEPDAGLNTTQLKTRAERRGNAYVIRGQKVWIST
                     AQVADRALILARTTPLDAVTRKTDGLSLFYTRLDRSRVEVRAIDKMGRHAVDSNLVFF
                     DDLPVPLEDRIGEEGDGFRIILHGLNPERILIAAEAVGLGRAALRRAAAYAKERIVFD
                     RPIGRNQAIQHPLAKAWMELEAANLMVMKAASLYDGGGECGIEANSAKYLAAEAAFA"
     gene            1158..1319
                     /locus_tag="VE686_06570"
     CDS             1158..1319
                     /locus_tag="VE686_06570"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY84149.1"
                     /translation="MDGKFKKAPRRQKEAVKRVVLSDDAKAAYEEMARKRDEQQRRYA
                     AHLPTDKAR"
     gene            complement(1320..>2099)
                     /locus_tag="VE686_06575"
     CDS             complement(1320..>2099)
                     /locus_tag="VE686_06575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011580394.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HYY84150.1"
                     /translation="DIRLDGGSAMVTGGSKGLGLAIATRYAASGADVAILARNADALE
                     RARAAISEKGRGRVVAIACDVSKADEIERAYATAVRDLGKVDIVVNNAGTSQRGNFEE
                     ITDEVWQADLDLKLFAAIRLTRLAWPDMKARGFGRVINVLNTGAKAPQGTTAPTSVTR
                     AAGMALTKVLSQEGAPHNILVNALLVGLIMSDQWVRRYEAGPKDGSLEDFARGMAKDI
                     PLGRIGTAEEFANIACFLASDQASYITGTAINVDGGRSPVV"
BASE COUNT          299 a          697 c          766 g          337 t
ORIGIN      
        1 cgcaaacgcc gcctccgccg cgagatactt ggcgctgttc gcctcgatgc cgcactcgcc
       61 gccgccgtcg tacaggcttg ccgccttcat caccatgagg ttcgcggcct cgagctccat
      121 ccaggctttg gcgagggggt gctggatggc ctggttccgg ccgatgggac ggtcgaagac
      181 gatacgctcc ttggcgtagg ccgcggcccg ccgcagcgcc gcgcgcccga gcccgacggc
      241 ttcggcggcg atgaggatgc gctcgggatt gagcccgtgc aggatgatgc ggaagccgtc
      301 gccttcctcg ccgatgcggt cctccaacgg gacgggcagg tcgtcgaaga acacgaggtt
      361 cgagtcgacg gcgtgccggc ccatcttgtc gatggcgcgc acctcgaccc gggagcggtc
      421 gagccgcgtg tagaacaggc tcaggccgtc ggtcttgcgc gtcacggcat cgagcggcgt
      481 cgtgcgcgcg aggatgagcg cccggtcggc gacctgggcg gtcgaaatcc agaccttctg
      541 gccgcggatg acataggcat tgccgcggcg ctcggccctg gtcttgagct gcgtcgtgtt
      601 gaggccggcg tcgggctcgg tgacggcgaa gcaggccttc tcctcgccgc ggatcagcgg
      661 cggcagcatg cgcgccttct gctcctccgt tccgaatacc acgacggggt tgagcccgaa
      721 gatgttcatg tgcaccgcgg acgcgccgcc catgccggca ccggactcgg caatggcctg
      781 catcatcacc gcggcctcgg cgatgcctag ccctgagccg ccgaaggctt ccggcatggc
      841 gatgccgagg agccccgcgt ccgccacggc gcggtagaac gcgtgcggaa actgcgcgtc
      901 ctgatcccgc gcgagccagt agccgtcgtc gaagggagcg cagaccttct cgacgaggtc
      961 gcgcgtcgcg gcctgctcgg gagagaggga gaagtccatg ccgcatcctt cgatcccgcc
     1021 ttgggcgggg cgatccgatt tgtagccttc gcggcttcgc gttgcccagc gcttatgcac
     1081 ttcggcgtgc ccgatgcggg gagaatcgcg ccgccggccg tgctaaggag gcatcgggcg
     1141 gaggttggtg agacgcgatg gacggcaagt tcaagaaggc tccccggcgg cagaaggagg
     1201 ccgtcaagag agtggtgctc tcggacgacg ccaaggcggc ttacgaggag atggcgcgca
     1261 agcgcgacga gcagcagcgc cgctacgcgg cgcacctgcc gaccgacaag gcgcggtagc
     1321 tacaccaccg gcgaccttcc gccgtcgacg ttgatggccg tgccggtgat gtaggacgcc
     1381 tggtcggagg cgaggaagca ggcgatgttg gcgaattcct ccgccgtgcc gatgcggccg
     1441 agggggatgt ccttcgccat gccgcgggcg aaatcctcga gcgagccgtc cttcggcccg
     1501 gcctcgtagc ggcgcaccca ttggtcgctc atgatgaggc cgacgaggag cgcgttgacg
     1561 aggatgttgt gcggcgcccc ctcctgcgac agcaccttgg tgagcgccat gccggcggcc
     1621 cgcgtgaccg aggtcggcgc ggtggtgccc tgcggcgcct tggcgccggt gttgaggacg
     1681 ttgatgacgc ggccgaagcc gcgcgccttc atgtcgggcc aggcgagccg ggtcaggcgg
     1741 atggcggcga agagcttcag gtcgaggtcg gcctgccaga cctcgtcggt gatctcctcg
     1801 aagttcccgc gctgcgaggt gccggcgttg ttgacgacga tgtcgacctt gccgaggtcg
     1861 cgcaccgcgg tggcgtaggc gcgctcgatc tcatcggctt tcgacacgtc gcacgcgatc
     1921 gcgacgaccc gtccgcgccc tttctcggag atcgccgcac gggcgcgctc gagggcgtcg
     1981 gcgttgcggg cgaggatggc gacgtcggcg ccggaggccg cgtagcgggt cgcgatcgcc
     2041 agcccgaggc ccttgctgcc gcccgtcacc atcgcgcttc ctccgtcgag cctgatgtc
//
LOCUS       DASQWN010000347         5172 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_823237, whole genome shotgun sequence.
ACCESSION   DASQWN010000347 DASQWN010000000
VERSION     DASQWN010000347.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 5172)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5172)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5172
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_823237"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..482
                     /locus_tag="VE686_06580"
     CDS             <1..482
                     /locus_tag="VE686_06580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018263040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015297 - antiporter activity [Evidence
                     IEA];
                     GO_function: GO:0042910 - xenobiotic transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="MATE family efflux transporter"
                     /protein_id="HYY84151.1"
                     /translation="IPLVFGLGAPLVALVGTNIGAGQKERALRIALTGGALAFMMTEA
                     IGLAAATWPQAWLGLFGDDPRMIETGSGYLRIVGPAYGFFGLGLSLYFASQGAGRLMW
                     PILAGLLRLVVAVLGGWIALRLTGSLAWVFAALSLGLVLYGALLAAMVASGAWFRRA"
     gene            759..2423
                     /locus_tag="VE686_06585"
     CDS             759..2423
                     /locus_tag="VE686_06585"
                     /EC_number="1.5.5.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015952402.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004174 -
                     electron-transferring-flavoprotein dehydrogenase activity
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0022900 - electron transport chain
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="electron transfer flavoprotein-ubiquinone
                     oxidoreductase"
                     /protein_id="HYY84152.1"
                     /translation="MELPERESMDFDVVVVGAGPAGLATAIRLKQLQPDLSVVVVEKG
                     SEVGAHILSGAVIDPIGLDRLVPEWRSDAERPLTTEVTTDEFMYLGPSGGVRMPQWPM
                     PKLMSNHGNFVGSLGNVTRYLGRKAEEIGVEIYPGFPAAEVLVDDTGAVVGVATGDLG
                     IGQDGEIKDSFTRGMELRAKYTVFAEGCRGNLTKQLIHRFDLARDSDHQKYGIGIKEL
                     WQVKPEKFRPGLVRHSMGWPLPNKAGGGSWLYHFDDHLVSVGFVVHLNYENPYLSPFD
                     EFQRFKTHPMIRDVFEGGKRIGYGARAIVEGGWQSVPKLTFPGGCLVGDAAGFVNVPR
                     IKGSHNAVLSGMLAAEHLSQALQAGRAHDELPSYNEAWRSTEIGQDLFRVRNVKPLWS
                     RFGTMVGVGLGGLDMWMNQLLGVSFFGTLAHGKPDHETLKPIAEAEPIAYPRPDGVLT
                     FDKLSSVFLSNTNHEEDQPSHLVLKDPSVPIRENLPRYGEPARLYCPAAVYEVVYGDA
                     ERRTDPQFVINAQNCVHCKTCDIKDPAQNIMWVTPEGGGGPNYVNM"
     gene            2638..4374
                     /locus_tag="VE686_06590"
     CDS             2638..4374
                     /locus_tag="VE686_06590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012332591.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HYY84153.1"
                     /translation="MIAGAPALAARDSTPRRPAAPLFQPAESLEGNYLAAYIAGASRD
                     TGAAAVFYREALKEDPRNPDLLERAFISFLADGSMQEAFKAGERLAGKESASGLIQLA
                     VGVRDLKARQYAAARASLMKGAKGRAADLTATLLSAWAYAGAGDGKKALETVDRLKGE
                     RSYTVFRDYHAGLMAELTGNGAEAERRLQAAYEGERNTLRVVDAYGRLLARRGQRDKA
                     LEVYSAFEAVLPRHPVILDAMAQIKAGKPLAPIVASAQDGAAEVLYGLGAAGNTQGDE
                     LPAIVYLRLALYLNPDHALALVTLADIFERLKQLEQAIAVLSRIPQGSPVRASADIQI
                     GLDLEQLNRGEEAVKHFETLMNQRPDDIDVITALGNVLRSRKRFAEAAEVYSKAVERI
                     GTPDRGNWTLFYYRGSAYERSKQWAKAEADLKKALELIPETQPSGRAQVLNYLAYSWV
                     DNGQNIDEAFKMLRRAVELSPRDGMIIDSLGWAYYRLGRYDDAVRELEKAIELKPGDP
                     VVNDHLGDAYWKVGRRLEAKFQWQHAKDSSPEPEDLVKIEHKLAHGIEEEKPAAAENK
                     PVDGPTESKNGG"
     gene            4418..>5172
                     /locus_tag="VE686_06595"
     CDS             4418..>5172
                     /locus_tag="VE686_06595"
                     /EC_number="2.7.1.148"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019401137.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050515 - 4-(cytidine
                     5'-diphospho)-2-C-methyl-D-erythritol kinase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="4-(cytidine
                     5'-diphospho)-2-C-methyl-D-erythritol kinase"
                     /protein_id="HYY84154.1"
                     /translation="MTGGPMLTARAPAKVNLWLHVAGRRADGYHDIDSLVAFAGTGDT
                     VALTPGPELSLAISGPTASASGDAAENLVTRAAREFAHRVPGARLGAFRLAKRLPVAA
                     GLGGGSSDAAAALRLLARLNGIHLEHPAVMAAAQATGADVPVCVAGRARIMTGMGERL
                     GPPLGLPTLFAVLVNPGVPVATAAVFKALDLAALENRVSSPHAAFGGALTADALLSHL
                     AQTRNDLEAPAMALAPAVGTALAAVGSTRACRLA"
BASE COUNT          801 a         1860 c         1759 g          752 t
ORIGIN      
        1 tgatcccgct ggtattcggc ctcggcgcgc ccctcgtcgc gctcgtcggc accaacatcg
       61 gcgcgggaca gaaggagcgt gccctgcgca tcgcgctcac gggcggcgcc cttgcgttca
      121 tgatgacgga ggccattggc ctcgccgccg cgacgtggcc gcaggcgtgg ctcggtctgt
      181 tcggcgacga tccccgcatg atcgagaccg gcagcggcta cctgcgcatc gtcggcccgg
      241 cctacggctt cttcggactt ggcttgtccc tctatttcgc ctcgcagggc gcaggccgcc
      301 tcatgtggcc catcctcgcc ggcctcctgc gcctcgtcgt cgccgtcctc ggcggctgga
      361 tcgcgctgcg cctcacgggc tcgctggcgt gggtcttcgc ggcgctgagc ctcgggctcg
      421 tgctgtacgg tgccctgctc gccgccatgg tcgcgtcagg cgcctggttc cggcgggcct
      481 aggagcaagg ccctccctcc ccgcgagggg ggagggatcg cggggcgccg acgccgcaag
      541 caggcctcgg ccgcgaaacc attaccgcgc attatgatca tcgcaagagg gagccgactt
      601 tacgccgaat gcgcatcatc atcatcgcgg cgagcgccct cccctcgccg gaacgcgcgg
      661 ccctggttgg cgcatgggcg tcagcccggg cttgaggaga gccgcgacct tcgcatacac
      721 accacagcgc atgggcgctg cggcgcgagg agaggcctat ggagctgccc gaacgggaat
      781 cgatggactt cgacgtcgtg gtggtgggcg cagggcccgc cggcctcgcg acggcgatcc
      841 ggctcaagca gctccagccc gacctctccg tcgtggtcgt cgagaagggc tccgaagtcg
      901 gcgcgcacat cctgtccggc gccgtcatcg acccgatcgg cctcgaccgg ctcgtccccg
      961 agtggcgcag cgacgccgag cgccccctca cgacggaggt gacgacggac gagttcatgt
     1021 acctcgggcc gtccggcggc gtacgcatgc cgcagtggcc gatgccgaag ctcatgtcga
     1081 accacggcaa cttcgtcggc tccctcggca acgtaacgcg ctacctcggc cgcaaggcgg
     1141 aggagatcgg ggtcgagatc tacccgggct tcccggccgc ggaggtgctc gtcgacgaca
     1201 cgggcgcggt ggtcggcgtc gcgaccggcg acctcggcat cggccaggac ggcgagatca
     1261 aggactcatt tacccgcggc atggagctgc gcgccaaata taccgtgttt gcagaaggtt
     1321 gtcgcggcaa cctgacgaag cagctgatcc accgcttcga cctcgcacgc gacagcgatc
     1381 accagaaata cggcatcggc atcaaggagc tgtggcaggt caagccggag aagttccggc
     1441 ccggcctggt gcgccattcc atgggctggc ccctgcccaa caaggcgggc ggcgggtcgt
     1501 ggctctacca cttcgacgac cacctcgtgt ccgtcggctt cgtcgtccac ctcaactacg
     1561 agaacccgta cctgtcgccc ttcgacgagt tccagcgctt caagacgcat ccgatgatcc
     1621 gggacgtctt cgaagggggg aagcgcatcg gctacggcgc ccgcgccatc gtcgaggggg
     1681 gctggcaatc ggtgccgaag ctcacgttcc cgggcgggtg cctggtcggg gacgcggccg
     1741 gcttcgtcaa cgtgccgcgc atcaagggct cgcacaacgc ggtcctgtcc gggatgctgg
     1801 ccgccgagca cctgtcgcag gcgctgcagg cgggccgcgc ccacgatgag ctcccgtcct
     1861 acaatgaggc ctggcgctcg accgagatcg gccaggacct gttccgggtc cgcaatgtca
     1921 agccgttgtg gtcgcgcttc gggaccatgg tcggggtcgg cctcggcggc ctcgacatgt
     1981 ggatgaacca gctcctcggc gtgtcgttct tcggcacgct ggcgcacggc aagcccgatc
     2041 acgagacgct gaagcccatc gcagaggccg agccgatcgc ctacccgcgg cccgacggcg
     2101 tgctcacctt cgacaagctc tcgtcggtgt tcctgtcgaa caccaaccac gaggaggatc
     2161 agccgagcca cctcgtcctc aaggatccct ccgtgccgat ccgcgagaac ctgccgcgct
     2221 acggcgagcc tgcccggctc tactgccccg ccgccgtgta cgaggtcgtg tacggcgacg
     2281 cggagcgtcg caccgacccg cagttcgtca tcaacgcgca gaactgcgtc cactgcaaga
     2341 cttgcgacat caaggacccg gcgcagaaca tcatgtgggt tacgcccgaa ggcggaggcg
     2401 gtccgaacta cgtcaacatg taggcggtct tcctctcgcg gaaggcacgc aagagtgacc
     2461 gggagcgcgt caacctttcc cttgccgccc tatggcgaag agtccatggt gccgccgctt
     2521 tcgaacgggc ctcgcggccg ggaatcggcg gcgtcgccgg gagccaacct cgtgtctcac
     2581 cccatcagaa cgaccgtccg gtaccgcgtc gcggcgctga tcctcgcggg cgcgacggtg
     2641 attgccgggg cgccggcgct cgcagcgcgc gattcgacgc cgcggcgccc ggcggcaccc
     2701 ttgttccagc cggcggagag cctcgagggc aactatctcg ccgcctacat cgccggcgcc
     2761 tcgcgggaca cgggcgcggc cgcggtgttc taccgtgagg cgctgaagga agatccccgc
     2821 aatcccgacc tcctcgagcg cgccttcatc tccttcctgg cggacgggtc gatgcaggaa
     2881 gccttcaagg cgggcgagcg tctcgccggc aaggagtcgg ccagcggcct gatccagctc
     2941 gccgtcggcg tccgcgatct caaggcgcgc cagtacgccg ccgcgcgggc gagcctgatg
     3001 aaaggcgcca aggggcgcgc cgcggacctg accgccacgc tgctgagtgc ctgggcctac
     3061 gccggggccg gcgacggcaa gaaggcgctc gagacggtgg accgcctcaa gggcgagcgc
     3121 tcgtacacgg tgttccggga ttaccacgcc gggctgatgg cggagctcac cgggaacggc
     3181 gccgaggcgg agcgccggct gcaagcggcc tacgagggcg agcgcaacac tctgcgcgtc
     3241 gtcgacgcgt acggccgtct gcttgcccgc cgggggcaga gggacaaggc gctcgaggtc
     3301 tactccgcct tcgaggccgt cctgccgcgt catccggtga tcctcgacgc catggcgcag
     3361 atcaaggccg gcaagccgct cgcacccatc gtcgcctcgg cccaggacgg agccgccgag
     3421 gtcctctacg gcctcggggc ggcgggcaac acgcaaggcg acgagctccc ggccatcgtc
     3481 tacctgcgcc tcgccctcta cctgaacccc gaccacgcac tcgcgctcgt cacgctcgcc
     3541 gacatcttcg agcggctgaa gcagctcgaa caggccatcg cggtcctgag ccggatcccg
     3601 caggggtcgc cggtgcgcgc gagcgccgac atccagatcg gcctcgatct cgagcagctc
     3661 aaccgcggcg aggaggccgt gaagcacttc gagacgctca tgaaccagcg tcccgacgac
     3721 atcgacgtga tcacggcgct cggcaacgtg ctgcgctcgc gcaagcgctt cgccgaggcg
     3781 gccgaggtgt actcgaaggc cgtcgagcgc atcggcacgc cggatcgcgg caactggacc
     3841 ctgttctact accgcggcag cgcctacgag cgctcgaagc agtgggccaa ggccgaggcg
     3901 gacctgaaga aggcgctcga gctgatcccc gagacgcagc cgagcggccg tgcgcaggtg
     3961 ctgaactacc tcgcctactc gtgggtcgac aacggacaga acatcgacga ggcgttcaag
     4021 atgctgcgcc gcgccgtcga gctgtcgcca cgcgacggga tgatcatcga cagcctcggc
     4081 tgggcctact accgcctcgg ccgctacgac gacgccgtgc gcgagctcga gaaggcgatc
     4141 gagctgaagc cgggcgaccc ggtcgtcaac gatcacctcg gggacgccta ctggaaggtc
     4201 ggccggcgcc tcgaggccaa gttccagtgg cagcacgcca aggactcgag ccccgagccc
     4261 gaggacctcg tgaaaatcga gcacaagctc gcgcacggca tcgaagagga aaagccggcc
     4321 gcggccgaga acaagcccgt cgacggtccg actgaaagca agaacggcgg ctgacgggcg
     4381 ccgccgcgcc acgctggccg gccggaacgc tgatcgaatg accggcggac cgatgctgac
     4441 ggcccgcgcg cccgccaagg tgaacctctg gctccacgtc gccggccggc gcgccgacgg
     4501 gtaccatgac atcgacagtc tcgtggcttt cgcggggacg ggcgacaccg tcgccctgac
     4561 acccggtccg gagctgagcc tcgcgatctc gggcccgacg gcctccgcct ccggcgatgc
     4621 ggccgaaaat ctcgtgacga gggcggcgcg agaattcgcc catcgcgtcc cgggcgcgcg
     4681 gctcggcgcc tttcgcctgg cgaagcggct ccccgtcgcg gcgggactgg gcggaggttc
     4741 gtccgacgca gcggccgcgc tccggctgct cgcccggctg aatggcattc atctcgagca
     4801 cccggccgtg atggccgccg cgcaggcgac cggcgccgac gtgcccgtat gcgtcgccgg
     4861 tcgcgcgcgg atcatgaccg gcatgggcga gcgcctgggg ccgccgcttg ggctccccac
     4921 cctcttcgcg gtcctggtca acccgggcgt tccggtcgcc accgcggcgg tgttcaaggc
     4981 gctcgatctt gccgccctcg agaaccgtgt cagctctcct cacgccgcct tcggcggtgc
     5041 gctcacggcg gacgcgctgc tgtcgcacct cgcgcagacg cgcaacgatc tcgaggcgcc
     5101 cgccatggcg ctcgctccgg cggtcgggac ggcgctcgcc gccgtcggca gcacgcgcgc
     5161 ttgccggctt gc
//
LOCUS       DASQWN010000348         2180 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1450400, whole genome shotgun sequence.
ACCESSION   DASQWN010000348 DASQWN010000000
VERSION     DASQWN010000348.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2180)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2180)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2180
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1450400"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..181
                     /locus_tag="VE686_06600"
     CDS             <1..181
                     /locus_tag="VE686_06600"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY84155.1"
                     /translation="NRSDRVDPATGPATTGATGQRPATTLVVAPGNAPRRAIVRMTLD
                     EIKNAPEYRSSENSR"
     gene            complement(183..256)
                     /locus_tag="VE686_06605"
     tRNA            complement(183..256)
                     /locus_tag="VE686_06605"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(222..224),aa:Gly,seq:tcc)
     gene            complement(277..362)
                     /locus_tag="VE686_06610"
     tRNA            complement(277..362)
                     /locus_tag="VE686_06610"
                     /product="tRNA-Tyr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(326..328),aa:Tyr,seq:gta)
     gene            533..1357
                     /locus_tag="VE686_06615"
     CDS             533..1357
                     /locus_tag="VE686_06615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009764280.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA methyltransferase"
                     /protein_id="HYY84156.1"
                     /translation="MPPDRPFRGRPPGRRPERAFGRGPRDDRDDVSILYGWHPVVEAL
                     RNPRRRLRRLLVTENAADRLTETVGTLSIAPELVRPDAITRLVEPDAVHQGLYVEADP
                     LPSPTLETLSDTGLVLALDQITDPHNVGAIVRTAAAFGVEAIITTARHSPSATGVLAK
                     AASGGLEHVPFLEVRNLAGALIALGQRGFERIGLDSEGSADMGEIPVRRPVVLVLGAE
                     GKGLRQRTRECCDVVARLDMPGAIKSLNVSNAAAICLYALSRATEEAVSGASARSG"
     gene            complement(1329..1817)
                     /locus_tag="VE686_06620"
     CDS             complement(1329..1817)
                     /locus_tag="VE686_06620"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY84157.1"
                     /translation="MRPASACALAAACCLSIFPTIDPACAAPRGSGHAVHGHRFVPPH
                     PVARHGALHRRVHGHARFHRLNRHHGFAGRWPGFVDGGYAPFASGFVDGAEPFPRDAL
                     ASGPQVPVVLGIREAPAAQPAIIIIGRDGAGVRSSKRKVTRAAHYAASGPLIIQIAPT
                     RR"
     gene            complement(1923..>2180)
                     /locus_tag="VE686_06625"
     CDS             complement(1923..>2180)
                     /locus_tag="VE686_06625"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY84158.1"
                     /translation="AAAASKNKASKETAESAKAASPRAKSAAASPKVADPEAIAAKRD
                     PQYTSATTETGTATDAGCLRLRKRLWVEGDGWLVRKVTVCP"
BASE COUNT          334 a          794 c          741 g          311 t
ORIGIN      
        1 gaaccgctcc gatcgcgttg atcccgccac aggtcccgcg accaccgggg ccaccggtca
       61 gcgccccgcg acgaccctcg tcgtcgcccc tggcaacgca ccccgccgcg ccatcgtgcg
      121 tatgacgctc gacgagatca agaacgcccc ggaataccgc agctccgaga actcgcgcta
      181 gctggagcgg gtgaagggaa tcgaaccctc gtcatcagct tggaaggctg ttgctctacc
      241 attgagctac acccgcgccg gtgcactcta gcgcgttggt gggggaagta ggactcgaac
      301 ctacgaaggc gtaagccagc ggatttacag tccgccccct ttgccgctcg ggacattccc
      361 ccgccgcgcc ccgaaggaag cgatcgcctc cgggccgaac gaaacgcccg ggaaccccgg
      421 aatttccgcg ggcgccctta tcggcagggg gtggagcggt gtcaaccgca aaaccccgcg
      481 cgccgacgcc ccgtcaatgt gctaacgggc agtgccgttt ggaagagtgc cgatgccgcc
      541 cgaccgcccg tttcgaggac gcccgcccgg ccgccgcccc gagcgcgcct tcggccgggg
      601 cccgcgggac gatcgcgatg acgtttcgat tctgtacggc tggcatcccg tggtcgaggc
      661 gctgcgcaac ccccgccggc gcttgcgccg gctgctcgtc accgagaacg cggccgaccg
      721 gcttacggag accgtcggaa cgctttcaat cgcgcccgag ctcgtgcgcc ccgacgccat
      781 cacccgcctc gtcgagcccg acgccgtgca ccaggggctc tacgtcgagg cggaccccct
      841 gccctcgccg accctcgaaa cgttaagtga cacgggcctc gtgctggcgc ttgaccagat
      901 caccgatccg cacaacgtcg gcgccatcgt gcgcacggcg gccgccttcg gcgttgaggc
      961 gatcatcacg acggcgcgcc acagcccctc tgccacgggc gtgctcgcga aggccgcctc
     1021 gggcggcctc gagcacgtgc cgttccttga ggtgcgcaac ctcgccggag cgctgatcgc
     1081 gctcgggcag cgcggcttcg agcgcatcgg cctcgattcc gagggctccg ctgacatggg
     1141 cgagatcccg gtccgtcgcc ccgtcgtgct cgtgctcggg gccgagggca agggcctgcg
     1201 ccagcgcacg cgcgagtgct gcgacgtggt cgcccggctc gatatgcccg gcgcaatcaa
     1261 gagcctcaac gtgtcgaacg cggccgcgat ctgcctgtac gccctgtcgc gcgcgaccga
     1321 ggaggccgtt agcggcgcgt cggcgcgatc tggatgatga gcgggccgga ggccgcatag
     1381 tgcgccgccc gcgtgacctt cctttttgag ctgcgcaccc cggccccgtc tcggccgatg
     1441 atgatgatcg cgggctgcgc agccggggcc tcgcggatcc cgagcaccac cgggacctgc
     1501 ggaccagacg ccaacgcgtc tctggggaac ggctcggctc cgtcgacgaa gccggacgcg
     1561 aacggagcat accctccgtc gacaaagccc ggccaacggc ccgcaaaccc gtgatgccgg
     1621 ttcaaccggt gaaatcgggc atggccgtgc acgcgacggt gcagggctcc gtggcgcgcc
     1681 acgggatggg gcggcacgaa gcgatgaccg tggacggcgt gcccgctacc ccgcggagcg
     1741 gcgcaggccg gatcgatagt cgggaagatg gaaaggcagc aggcggccgc gagggcgcaa
     1801 gcggaggcag gtcgcatggc gacaactccc agaacgcggc ctcctccgcc tgaaagcgta
     1861 gcgctttgag cggacgctgt caccggccat ctgttgcggc gtcagcggag cgtcgccgat
     1921 cctcaggggc agacggtgac cttgcggacc agccagccat cgccctcgac ccagaggcgc
     1981 ttgcgcaggc gcaggcagcc cgcgtccgtc gccgtgcctg tctccgtggt ggccgaggtg
     2041 tactgcggat cgcgcttcgc cgcgatcgcc tcggggtcgg ccaccttggg cgaagcggcg
     2101 gcgctcttcg cccgcggcga cgcggccttc gcagactcgg ccgtctcctt ggaagccttg
     2161 ttcttgctgg cggcagcagc
//
LOCUS       DASQWN010000349         4354 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1053096, whole genome shotgun sequence.
ACCESSION   DASQWN010000349 DASQWN010000000
VERSION     DASQWN010000349.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 4354)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4354)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4354
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1053096"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..732)
                     /locus_tag="VE686_06630"
     CDS             complement(<1..732)
                     /locus_tag="VE686_06630"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY84159.1"
                     /translation="MKILIDVDRALAEGKITADEYQRIRALAVGQTSDLALNILIGFG
                     VVALAAGFLTLVPSIGAVVATGAAVAALGLALILLRPERWRMLGEILLVVGATLFAGG
                     LVALDEGSTRAAVAAALLFAAASVLARNGLLAGLAVLALSAALGARTGYMHAMYMLGV
                     EQPVVTVIAFSALGVALVALAKYLPDHLARLAIVAARVSALLVNLGFWIGSLWGDSRG
                     ATTVPRDVFVVGWALALLCAGVWAWR"
     gene            936..2363
                     /locus_tag="VE686_06635"
     CDS             936..2363
                     /locus_tag="VE686_06635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009763338.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="homospermidine synthase"
                     /protein_id="HYY84160.1"
                     /translation="MTTWPVHGRISGPIVMIGFGSIGRGTLPLIERHFTFDKRRFTVI
                     DPADGNRHLLDERGIRFVQEGLTRENYRDLLTPLLTEGGGQGFCVNLSVDTSSRDIME
                     LCRELGALYVDTVNEPWPGFYFDKSKGPEARTNYALRGITLEARRRNPGGSTAVSCCG
                     ANPGMVSWLVKQALLNVAGDLGVEPGDPKSREDWAQLMQRVGVKGIHIAERDTQRATS
                     EKPMGVFVNTWSVEGFVSEGNQPAELGWGTHERWTPEGAGRLGDDSLGIYLLQPGGNT
                     RVRSWTPTAQAQYGFLVTHNEAISIADFFTVREGDKVAYRPTCHYAYHPCNEAVLSLH
                     EMFGQGGRVQEKQHILEENEIVDGVDELGVLLYGHGRNAYWYGSQLSIEEARRIAPYQ
                     NATGMQVTSAVLAGMVWALENPMAGIVESDEMDFRRCLEVQRPYLGPVVGVYTDWTPL
                     AGRPGLFPEDLDTSDPWQFRNVLVR"
     gene            2382..2720
                     /locus_tag="VE686_06640"
     CDS             2382..2720
                     /locus_tag="VE686_06640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019904917.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY84161.1"
                     /translation="MPFFESYYERKLRGSLGVADAEAVLDLRGASPAQAEASIKDMLE
                     RSRFGAAKTVAVRLDPPPEGGGETLFQPVGRLLLEAKRRGWIERLQTLPAADGLGFYL
                     ALSGNAARNT"
     gene            2786..3688
                     /locus_tag="VE686_06645"
     CDS             2786..3688
                     /locus_tag="VE686_06645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011439338.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional helix-turn-helix domain-containing
                     protein/methylated-DNA--[protein]-cysteine
                     S-methyltransferase"
                     /protein_id="HYY84162.1"
                     /translation="MLDTLEKLGLDRPEPVADTGPAGDYERIRRIVAFISERWREQPS
                     LEDIAAHVGLSTTHVHHLFRRWCGLSPKAFLQAITLDNAKALLADSASVLDTTYELGL
                     SGPARLHDLFVTHEAMTPGDYKAGGAGLTLRVGYHPSPFGEAILVATERGLAGLGFVD
                     GGDRAAALADMQRRWPKAAYVEDEAATAPLARRIFDPLSWRPEQPLRVVLIGTDFEVR
                     VWQTLLRVPLGRATTYSDIASRIGKPSASRAVGAAVGKNPISFVVPCHRVLGRSGALT
                     GYHWGLTRKQAMLGWEQGRLAPAA"
     gene            complement(3804..>4354)
                     /locus_tag="VE686_06650"
     CDS             complement(3804..>4354)
                     /locus_tag="VE686_06650"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY84163.1"
                     /translation="KMAVTRTALALAAALAGLTPARAEPTLVFRGETFVQRYESGNDK
                     ARLAEFVPPGETLQTWTKLIGYRAVFDSVQSPADAAAVVGKLAQQRYAGAKPRVMVKG
                     TEALVEFVAKAPNSSVMEYNVFKYAPGQDGRGIVSFQYAQRFRGLDPDDARARGGEAL
                     EQAAAFDMARVRATTARRGASF"
BASE COUNT          655 a         1564 c         1507 g          628 t
ORIGIN      
        1 acgccacgcc cagaccccgg cgcacagcag ggcaagtgcc catccgacga cgaagacgtc
       61 gcgtgggacc gtggttgcgc cgcggctgtc gccccagagg gagccgatcc agaagcccag
      121 gttgacgagc agcgcgctca cccgcgcggc gacgatcgcg agccgcgcca ggtggtcggg
      181 caggtacttc gccagagcga caagcgcgac gccaagggcc gagaaggcga tgacggtgac
      241 gacgggctgc tcgacgccga gcatgtacat ggcgtgcatg tatcccgtgc gggccccgag
      301 cgctgccgaa agggcgagga cggcaagccc cgcgagcagg ccgttgcgcg ccaggaccga
      361 ggctgcggca aagagcaagg cggcggccac cgccgcgcgg gtcgagccct cgtcaagggc
      421 gacgagcccg ccggcaaaca gcgtggcgcc gacgacgagg aggatttcgc cgagcatgcg
      481 ccaccgctcc ggccgcagga ggatgagcgc gaggccgagc gccgcgacgg cggcgcccgt
      541 cgcgaccacc gctccgatgg acggcaccag ggtgaggaaa ccggcggcga gcgcgaccac
      601 gccgaatccg atgaggatgt tgagcgcaag gtcggacgtc tgtccgacag caagggcacg
      661 aatgcgctgg tactcgtctg ccgtgatctt gccttcggcc agcgcgcggt cgacgtcgat
      721 caggatcttc atgggctacc cccgcagtcg acccgcatgc cgggccgcag cgcttgtacg
      781 cccgtagtgt ttccgaagct ttgcgttgca tccgaatcgt gtgtccgcgg tcgcgcgccc
      841 ggtgccgcat tgacggccgg cgcgcgacct gattggaggc gccaagcttg gcgccgtgcc
      901 gcgcgccggc ccgtaccttg aggagtgttg ccgcgatgac cacctggccc gttcacggcc
      961 gcattagcgg cccgatcgtc atgatcggct tcggctccat cgggcgcggc acgctgcccc
     1021 tcatcgagcg tcacttcacg ttcgacaagc gccgcttcac cgtcatcgac cccgcggacg
     1081 gcaaccggca cctcctcgac gagcgcggca tccgcttcgt gcaggagggc ctcacgcgcg
     1141 agaactaccg cgacctgctg acgccccttc tgaccgaggg cggtggccag ggcttctgcg
     1201 tcaacctctc cgtcgacacg tcctcgcgcg acatcatgga gctctgccgc gagctcggcg
     1261 ccctctacgt cgataccgtc aacgagccct ggcccggttt ctacttcgac aagagcaagg
     1321 gaccggaggc gcgcacgaac tacgccctgc gcgggatcac tctcgaggct cggcgccgca
     1381 accccggcgg gtcgaccgcc gtgtcgtgct gcggcgccaa ccccggcatg gtgtcgtggc
     1441 tggtcaagca ggcgctcctc aatgtggcag gcgacctcgg ggtcgagcct ggcgatccga
     1501 agagccggga agactgggcg cagctcatgc agcgcgtcgg cgtcaagggc atccacatcg
     1561 ccgagcgcga cacccagcgc gccacgtccg agaagcccat gggggtcttc gtcaacacct
     1621 ggtcggtgga gggcttcgtg tccgagggca accagccggc cgagctcggc tggggcacgc
     1681 acgagcgctg gacgcccgag ggggcaggcc gcctcggcga cgacagcctc ggcatctacc
     1741 tgctgcagcc cggcggcaac acgcgcgtgc gctcgtggac gccgaccgcg caggcgcaat
     1801 acggcttcct cgtcacccac aacgaggcga tctcgatcgc cgatttcttc accgtacgcg
     1861 agggggacaa ggtcgcctac cggccgacct gccactacgc ctaccatccc tgcaacgagg
     1921 cggtgctgtc gctgcacgag atgttcggcc agggcggccg cgtgcaggag aagcagcaca
     1981 tcctcgagga gaacgagatc gtcgacggtg tcgacgagct cggggtgctg ctctacggcc
     2041 acggccggaa cgcctattgg tacgggtcgc agctctccat cgaggaggcg cggcgcatcg
     2101 cgccctatca gaacgcgacg ggaatgcagg tgacctcggc ggtcctcgcc ggcatggtct
     2161 gggccctcga gaaccccatg gccggcatcg tcgagtccga cgagatggac tttcgccgct
     2221 gtctcgaggt gcagcgcccg tatctcgggc cggtggtcgg cgtctacacc gactggacgc
     2281 cgctcgcggg ccggcccggg ctgttcccgg aggacctcga caccagcgac ccctggcagt
     2341 tccgcaacgt cctcgtgcgc tgagcggggg cggggatcgc cttgccgttc ttcgagtcgt
     2401 attacgagcg caagctgcga ggctccctcg gggtcgccga cgccgaggcg gtgctcgacc
     2461 tgcgcggcgc ctcccccgcg caggcggaag cctcgatcaa ggacatgctc gagcgcagcc
     2521 gcttcggggc cgcgaagacc gtggcggtcc gcctcgatcc gccgccggag ggcggcggcg
     2581 agacgctgtt ccagcccgtc gggcgcctcc tcctcgaggc caagcggcgc ggctggatag
     2641 agcgcctgca gacgctgccg gcggcggacg gcctggggtt ctacctggcg ctctccggca
     2701 acgcggcgcg aaacacctga ggcgcaggaa acgggtgtcg gcggcatccc ggcagggcta
     2761 gatagcgggg cgaaggatga cccccatgct cgataccctc gaaaagctcg gcctcgaccg
     2821 ccccgagccc gtcgccgaca ccggcccggc gggcgactac gagcgcatcc ggcgcatcgt
     2881 cgccttcatc tccgagcgct ggcgcgaaca gccctccctc gaggacatcg ccgcccacgt
     2941 cggcctgtcg acgacgcacg tgcaccacct gttccggcgc tggtgcgggc tgagcccgaa
     3001 agccttcctc caggccatca ccctcgacaa cgccaaggcc ctgctcgccg actcggcgag
     3061 cgtgctcgac accacgtacg agctcggcct gtccgggccg gcgcggctgc acgacctgtt
     3121 cgtgacgcac gaggccatga cgccgggcga ctacaaggcc ggcggcgccg ggctgaccct
     3181 gcgcgtcggc taccatccct cgccgttcgg cgaggcgatc ctcgtcgcga cggagcgcgg
     3241 ccttgcgggc ttagggttcg tcgacggcgg cgaccgggca gccgcgctcg ccgacatgca
     3301 gcgccgctgg cccaaggcgg cctacgtcga ggacgaggcc gcgacggccc cgctcgcccg
     3361 gcgcatcttc gatcccttga gctggcgccc cgagcagccc ttgcgcgtcg tcctcatcgg
     3421 cacggatttc gaggtccgcg tgtggcagac gctgctccgc gtgccgctcg ggcgggcgac
     3481 gacctactcg gacatcgcct cgcgcatcgg caagccctcc gcctctcgcg ccgtcggggc
     3541 ggcggtgggc aagaacccga tctcgttcgt ggtgccgtgc caccgggtgc tcgggcgctc
     3601 cggggccctg accggctacc actggggcct gacccgcaag caggccatgc tcggctggga
     3661 gcagggccgc ctcgccccgg ccgcctgacg gcaggcccac gcgggctggt ctgcagtcat
     3721 catcgcatcg tgatcgttgg gcgctccctc gcggcgccct tcatcatcgt aggtccgggc
     3781 tgcgggtcgc cgccttgtgc ggatcaaaac gaggcgccgc ggcgggcggt cgtggcgcgc
     3841 acgcgggcca tgtcgaaggc cgcagcctgc tcgagcgcct cacctccgcg cgccctcgca
     3901 tcatcgggat cgaggccacg gaagcgttgt gcgtactgga acgacacgat cccgcgcccg
     3961 tcctgtccgg gcgcgtactt gaagacgttg tactccatga cgctgctgtt tggggccttg
     4021 gcgacgaatt cgaccaacgc ctcggtgccc ttgaccatca cccgcggctt ggcgccggca
     4081 tagcgctgct gggcaagctt cccgacgacc gctgccgcat ccgcggggct ttggacgctg
     4141 tcgaagacgg cacggtagcc aatcagcttg gtccaggtct gcagggtctc gcccggcggc
     4201 acgaactcgg ccaggcgggc cttgtcgttt ccgctctcgt acctctgcac gaacgtctcg
     4261 ccgcggaaga cgagggtcgg ctcggcccgg gcgggggtca gacctgcgag cgctgccgca
     4321 agcgccagcg ctgttctcgt gacggccatc tttg
//
LOCUS       DASQWN010000350         2166 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_756487, whole genome shotgun sequence.
ACCESSION   DASQWN010000350 DASQWN010000000
VERSION     DASQWN010000350.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2166)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2166)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2166
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_756487"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1053
                     /locus_tag="VE686_06655"
     CDS             <1..1053
                     /locus_tag="VE686_06655"
                     /EC_number="2.3.1.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017484942.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016747 - acyltransferase activity,
                     transferring groups other than amino-acyl groups [Evidence
                     IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="homoserine O-acetyltransferase"
                     /protein_id="HYY84164.1"
                     /translation="PWQIAYQTYGTLNAARSNAVLVCHALTMDQHVANVHPVTGKPGG
                     WDTMVGPGLPIDTNRFFVICANVLGGCLGTSGPASTNPATGKPWGLDFPLVTVRDMVR
                     SQAALLDRLGIESLFCVLGGSMGGMQVLQWAASYPERVFAALPIATGARHSAQNIAFH
                     EVGRQAVMADPDWRGGRYLEEGARPRKGLSVARMGAHITYLSETALHRKFGRRFQDRQ
                     NLSFSFDAEFQVESYLRHQGITFVERFDANSYLYLTRAMDYFDLAADYGGVLADAFRG
                     TKTRFCVISFTSDWLFPTPESRAIVHALNAAGASVAFVEVESDKGHDAFLLEEPELFA
                     AVQGFIDAAARARGLG"
     gene            1053..1790
                     /gene="metW"
                     /locus_tag="VE686_06660"
     CDS             1053..1790
                     /gene="metW"
                     /locus_tag="VE686_06660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003604426.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009086 - methionine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methionine biosynthesis protein MetW"
                     /protein_id="HYY84165.1"
                     /translation="MAQAGRAHSRREGALDLPHRPAAVGTATLERSGTPPPTVGGDGQ
                     AQRLDLLLVADMVEPGSRVLDVGCGDGALLALLRDRRNVDGRGIELSRDGVNQCLAKG
                     LPVIQGDADTDLADYPNDAFDYVILSQTIQATRQPKVVLEHLLRIGRRAIVSFPNFGH
                     WRVRVEVGLKGRMPMTENLPYCWYNTPNIHFCTIRDFVGLCREVGSRMERAVALDAAG
                     QPIRFNLPWWAWNLFGEQAVFLLRRGD"
     gene            complement(1787..>2166)
                     /locus_tag="VE686_06665"
     CDS             complement(1787..>2166)
                     /locus_tag="VE686_06665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019906340.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA];
                     GO_process: GO:0015074 - DNA integration [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HYY84166.1"
                     /translation="ERLVPLTEPSQSAAATYLALLEGREQAHGPWLFPADSESGHLTR
                     QAFARELKATAAAAGVRADKVSPHVLRHAFASHLLQNGADLRVVQELLGHADIGTTQI
                     YTHVLDERLKSMVRDLHPLNDPG"
BASE COUNT          297 a          801 c          721 g          347 t
ORIGIN      
        1 ccgtggcaga tcgcctacca gacctacggc accctcaacg ccgcgcgctc gaatgcggtt
       61 ctggtgtgcc atgcgctcac catggaccag cacgtggcca acgttcaccc ggtcacgggc
      121 aagccgggcg gctgggacac catggtcggc cccggcctcc cgatcgacac caatcgcttc
      181 ttcgtcattt gtgccaacgt gctcggcggg tgcctgggga cgagcgggcc ggcctcgacg
      241 aacccggcaa cgggcaagcc ctggggcctc gacttccccc tcgtcacggt gcgcgacatg
      301 gtgcgctccc aggcggcact cctcgaccgg ctcggcatcg agagcctgtt ctgcgttctt
      361 ggcggatcga tgggtggcat gcaggtgctg caatgggccg caagctaccc cgagcgggtc
      421 ttcgccgccc tgccgatcgc cactggtgcg cggcactcgg cccagaacat cgccttccat
      481 gaggtcgggc gccaagccgt catggccgat cccgactggc gcggcggccg ctatctcgag
      541 gagggcgcgc gcccgcggaa gggcctgtcc gtggcccgca tgggcgcgca catcacctac
      601 ctctcggaga cggcgctgca ccgcaagttc gggcgccgct tccaggaccg ccagaacctg
      661 tcgttctcgt tcgacgccga gttccaggtt gaaagctacc tgcgccacca aggcatcacc
      721 ttcgtggagc gcttcgacgc caactcgtac ctctacctca cgcgcgcgat ggactatttc
      781 gacctcgccg ccgactacgg cggcgtcctc gccgacgcct tccggggcac caagacgcgg
      841 ttctgcgtca tctccttcac ctccgactgg ctgttcccga cgccggagtc gcgcgccatc
      901 gtgcatgcgc tcaacgctgc cggcgcgtcg gtcgccttcg tggaggtcga gagcgacaag
      961 ggccacgacg ccttcctgct cgaggagccc gagctgttcg cggccgtgca gggcttcatc
     1021 gacgccgctg ctcgcgcccg ggggctcggc tgatggcaca ggccggccgg gcgcactccc
     1081 gccgcgaggg cgcgctggat ttgccgcacc gccccgcggc cgtcggcacc gcgacgctcg
     1141 aacgttccgg cacgccgccg ccaacggtcg gcggcgacgg ccaggcgcag cgcctcgacc
     1201 tcctcctcgt cgccgacatg gtcgagccgg gctcccgcgt cctcgacgtc ggctgcggcg
     1261 acggcgcgct cctggcgctc ctgcgcgacc gccgcaacgt cgacggccgc ggcatcgagc
     1321 tgtcgcggga cggcgtcaac cagtgcctcg ccaaggggct gccggtcatc cagggggacg
     1381 ccgacacgga cctcgccgac tacccgaacg acgccttcga ctacgtcatc ctctcgcaga
     1441 ccatccaggc gacgcgccag cccaaggtgg tcctcgagca tctgctgcgc atcggccgac
     1501 gggccatcgt gtcgttcccg aacttcggtc actggcgcgt gcgcgtcgag gtcgggctca
     1561 agggccgcat gcccatgacc gagaacctgc cctactgctg gtacaacacg cccaacatcc
     1621 atttctgcac gatccgcgac ttcgtcggcc tatgccgcga ggtcggctcc cgcatggagc
     1681 gtgccgtcgc cctcgacgcc gcgggtcagc cgatccgctt caacctgccc tggtgggcgt
     1741 ggaacctgtt cggcgagcag gccgtgttcc tcctgcgccg cggcgactag cccgggtcgt
     1801 tgagcgggtg caggtcgcgc accatgctct tcaggcgctc gtccaggacg tgggtgtaga
     1861 tctgggtcgt gccgatgtcg gcgtggccga gcaattcctg aacgacgcgc aggtcggccc
     1921 cgttctgcaa caggtggctg gcgaaggcgt ggcgcaggac gtgcgggctc accttgtcgg
     1981 cccgcacccc ggccgcggcg gccgtcgcct tgagttcgcg cgcgaaggcc tggcgcgtga
     2041 ggtgaccgct ctcgctgtcg gccgggaaga gccacggccc gtgcgcctgc tcccgcccct
     2101 caaggagggc gagataggtc gcggccgcgc tttgcgaggg ttcggtgagc ggaacgagcc
     2161 gctcct
//
LOCUS       DASQWN010000351         2038 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1252321, whole genome shotgun sequence.
ACCESSION   DASQWN010000351 DASQWN010000000
VERSION     DASQWN010000351.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2038)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2038)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2038
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1252321"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(381..764)
                     /locus_tag="VE686_06670"
     CDS             complement(381..764)
                     /locus_tag="VE686_06670"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_function: GO:0042314 - bacteriochlorophyll binding
                     [Evidence IEA];
                     GO_process: GO:0019684 - photosynthesis, light reaction
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PRC-barrel domain-containing protein"
                     /protein_id="HYY84167.1"
                     /translation="MSDMFTFRDSLEPEGSTALPKESGGGAGRTEARDVVDYKVEATD
                     GSIGRVMDATYQAGESYLVVDTGGTILSKRVVLPAGVIDRVDRDDSTIYVNRSKDEIK
                     GAPEFDEERYREAAYREELSRYYSR"
     gene            921..1202
                     /locus_tag="VE686_06675"
     CDS             921..1202
                     /locus_tag="VE686_06675"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY84168.1"
                     /translation="MLPEVTSRSALAGRVAAKAAGDGADLVVAVGVVVVGLMTAAVNS
                     MEGTSARAGPARENGLRRLIPFGGPHMSTRAIAIVALVIAVIVLIILLT"
     gene            1465..1758
                     /locus_tag="VE686_06680"
     CDS             1465..1758
                     /locus_tag="VE686_06680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003532955.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GYD domain-containing protein"
                     /protein_id="HYY84169.1"
                     /translation="MPSYIALCNWTEQGVRSFNQSVDRYEAARAPFEQMGISIKDIYW
                     TLGGHDLVFVAEAPDDETLAAALLSLGGQGNLRTTTLRAFGPDEMRAVIGKVT"
BASE COUNT          308 a          696 c          711 g          323 t
ORIGIN      
        1 gaaggtcgcc atgatcacga ccgggccggg gctgatcggg cccatcgcca cggcatcgac
       61 gatgcggcac cccgcgaccg tcccgggatg gtggcgatcc gcgcggaggc gggcggtcaa
      121 ccgccagcgt aaacattcgc cggtgcgtgc cggtggatca ataaccgcaa cggccgacgt
      181 cgaggcgggt ccgccgaatc agcgcaagcg cgcctcggcg gccatgctgg cgccgagatt
      241 ccctccaagt cgaggcaccg ccgcgtggtc gggcgccggt ttccatgcgc cggggacggc
      301 gccagatgag gcggcgccgg agtcgcgtac cgctcgctgt ccccaactcg gggacgccgg
      361 gcagtcgttc cagcggccgt tcatcggctg tagtagcgcg agagctcttc gcggtacgcg
      421 gcttcgcgat agcgctcttc gtcgaactcg ggcgcgccct tgatctcatc cttcgatcgg
      481 ttgacgtaga tcgtcgagtc gtcgcggtcg acgcggtcga tgaccccggc cggcagtacg
      541 acccgcttgc tcagaatggt gccgccggtg tccaccacga ggtagctctc gccagcctgg
      601 tacgtcgcgt ccatcacccg accgatggac ccgtctgtgg cctcgacctt gtagtcgacc
      661 acgtcgcgcg cctccgtcct gccggcgccg cccccggact ccttcggcag ggcggtggag
      721 ccctcgggct ccagcgaatc acggaacgtg aacatgtcgc tcatctgcgc atcctccgac
      781 tcggttacgc cacgattcgt acccgcgcgc cattcgccgc caaaacgcgg atcgggacga
      841 tcgactcggg gagcgcagaa cgaggtcacg ttgcgtggag cggcgggtcg agcttcgcgg
      901 acggccggct ggccgacgca gtgctgccgg aggtcaccag ccggagcgcg ctcgccggtc
      961 gcgtcgctgc gaaggcggcg ggtgatgggg cggacctcgt cgttgccgtc ggggtggtcg
     1021 tcgtcggcct gatgacggcc gccgtcaatt cgatggaggg gactagcgcc cgggcagggc
     1081 cggcgcggga gaatgggctc cgtcgtctga ttcccttcgg aggcccccac atgtccacac
     1141 gcgcgatcgc gatcgtcgcc ttggtcatcg ccgtcatcgt cctgatcatc ctgctcacgt
     1201 aagagatcgg cgaccgggcg atctgcccgg cgcgggcgca acctgtccga agggcgcgtc
     1261 gttatgggag agctgtctca caagcctttg cgccgcggcg ccggctgtac aagcgcgttc
     1321 tgcgctcgca gagctcaggg aggcggaggc cgggatgctt gaagcgggtt cgtcggctcg
     1381 gttagggtcg tacgccgaga gggtcgagcc cgacgaggca ctctctcgct cggctcgatg
     1441 cgcacgccca acccgggagg gccgatgccg tcgtatatcg cgctgtgcaa ctggaccgag
     1501 cagggggtcc gcagcttcaa tcagagcgtc gaccgctacg aggcggcgcg ggcgccgttt
     1561 gagcagatgg gcatcagcat caaggacatc tattggacgc tcggcggcca cgacctcgtg
     1621 ttcgtcgccg aagcgccgga cgacgaaacg ctcgccgctg cgctgctttc gctgggcggc
     1681 caaggcaacc ttcgtacgac gacgcttcgc gctttcggac ctgacgagat gagggccgtg
     1741 attggcaagg tcacctgacg tcacccctag acgacgccga acgacagctc cggcgcgacc
     1801 gccgagagca cgagggtctc gagcgctatg aaggccgcgg ccgccacgag cccgagcgca
     1861 gcggcggggt gtcggacgca agagcagcga cagcgggcgc acgcgcatcg ctgggcaagc
     1921 gtactgacgc atcgcgtctg ctcacgcatc acactccccc ggtcgtgcgc tgccgagtgg
     1981 cctgcctcat cccggttcct gccgctcgcg gcccacgcca cgtccctctg ggagccgg
//
LOCUS       DASQWN010000352         2767 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_756950, whole genome shotgun sequence.
ACCESSION   DASQWN010000352 DASQWN010000000
VERSION     DASQWN010000352.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2767)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2767)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2767
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_756950"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..710)
                     /gene="truA"
                     /locus_tag="VE686_06685"
     CDS             complement(<1..710)
                     /gene="truA"
                     /locus_tag="VE686_06685"
                     /EC_number="5.4.99.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012333978.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009982 - pseudouridine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(38-40) synthase TruA"
                     /protein_id="HYY84170.1"
                     /translation="MPRYKLVIEYDGTPFAGWQMQTNGPSVQQAVEEAITRFCGHAVR
                     IQCAGRTDAGVHATHQVAHVDLDKGWPLDTIRSAANAHLRPAPIAVVAAEAVPDGFNA
                     RTAAVKRHYIYRILNRRSRPALERDRVWHVPWALDAAAMHAAAQALVGRHDFTTFRAA
                     ECQANSPVKTIDRLDVERLGDEIRVAASARSFLHHQVRSMVGSLALVGAGKWSAADLR
                     AALDARERGRCGPLARAAG"
     gene            complement(711..1646)
                     /gene="fmt"
                     /locus_tag="VE686_06690"
     CDS             complement(711..1646)
                     /gene="fmt"
                     /locus_tag="VE686_06690"
                     /EC_number="2.1.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012333979.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004479 - methionyl-tRNA formyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006431 - methionyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methionyl-tRNA formyltransferase"
                     /protein_id="HYY84171.1"
                     /translation="MSALRVVFMGTPDFAVPTLSEIVGHGHEVAAVYTRAPAAAGRGM
                     ELKPSPVHRLADRFGIPVLTPKSLRGEDAAETFRRHDADVAVVVAYGLILPKPILDAP
                     RLGCLNLHASLLPRWRGAAPIQRAVMAGDAETGVAVMRMEEGLDTGPIAMMETVQIGP
                     NTTAGELHDVMMMHGADTMVRALAAHSRGGLTFTPQRAEGVTYAAKITNDEARIEWRR
                     SAGKVHNQVRGLSPFPGAFFTADLGKGPERVKVVRTALADGAGAPGKLLDRDGTVACT
                     DGAVRLVTVQRAGKGPMPAADFLRGARLEPGAQLP"
     gene            complement(1643..2161)
                     /locus_tag="VE686_06695"
     CDS             complement(1643..2161)
                     /locus_tag="VE686_06695"
                     /EC_number="3.5.1.88"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019400803.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042586 - peptide deformylase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptide deformylase"
                     /protein_id="HYY84172.1"
                     /translation="MPIRPLVVLPDPRLRLKSEPVGAVSDDIRTLAQDMLDTMYDAPG
                     VGLAAIQIGVPKRVITMDVSKSETERNPLVLINPEVVWASEDTRVYEEGCLSIPEYYE
                     EVERPERVRFRYRTLDGETVEADADGLMATCVQHEIDHLNGVLFIDHLSKLKRDRVTK
                     KFAKAAKREATG"
     gene            complement(2222..>2767)
                     /locus_tag="VE686_06700"
     CDS             complement(2222..>2767)
                     /locus_tag="VE686_06700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012331541.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfoxide reductase heme-binding subunit YedZ"
                     /protein_id="HYY84173.1"
                     /translation="DLTRIATEIVLRIYLLIGFTALVGLVALGATSTDAAMRRLGANW
                     HRLHRAIYAIAVLALAHYFLQAKLNVTQPVLWSGFFLLLMGYRLIRRFELPEGPLGLV
                     ALAAAAGVATALLEAGWYAAATGANAALVLGANLDFEYEIRPAWYVLAVGLALSFVAR
                     VRRAPAPRQRRRAQALEPARA"
BASE COUNT          409 a          944 c         1017 g          397 t
ORIGIN      
        1 cccgccgctc gagccagggg gccgcagcgg ccgcgctcgc gcgcgtcgag cgcggcgcgc
       61 agatcggcgg cactccactt gccggcgccg acgagggcga ggctgccgac catcgagcgg
      121 acctggtggt gcaggaacga ccgcgccgag gcggcgaccc ggatctcgtc cccgaggcgc
      181 tccacgtcga gcctgtcgat ggtcttcacc gggctgtttg cctggcattc ggcggcccgg
      241 aaggtcgtga agtcgtgccg gccgacgagg gcctgcgcgg cggcgtgcat ggccgcagca
      301 tcaagcgccc aagggacgtg ccacacccgg tcgcgctcga gggcaggccg ggagcggcgg
      361 ttcaggatgc ggtagatgta gtgccgcttc accgccgcgg tccgcgcgtt gaaaccatcc
      421 ggcaccgcct ccgcggcgac cacggcgatg ggcgccggac gcaggtgcgc gttcgcggcg
      481 ctccggatcg tgtcgagcgg ccagcccttg tcgaggtcga cgtgcgcgac ctggtgcgtg
      541 gcgtgaacgc cggcgtccgt gcgccctgcg cactggatgc gcaccgcatg gccgcagaag
      601 cgcgtaatcg cttcctcgac ggcctgctgc accgaggggc cgttcgtctg catctgccag
      661 ccggcgaagg gtgtcccgtc gtactcgatg acgagcttgt accgcggcat ctaaggaagc
      721 tgcgcgccag gctcgagccg cgcgccgcgc aggaagtcgg ccgccggcat gggacctttc
      781 cctgcgcgct gcacggtcac gagccgcacg gcgccgtccg tgcacgcgac ggtgccgtcg
      841 cggtcgagca acttgccggg cgcgccggcg ccgtcggcga gggccgttcg caccaccttc
      901 acgcgctccg gacctttccc gaggtcggcg gtgaagaacg cacccgggaa gggcgagagg
      961 ccgcgcacct ggttgtgcac cttgccggcg gagcgccgcc actcgatgcg ggcctcgtcg
     1021 ttggtgatct tcgccgcata ggtcacgcct tcggcgcgct gcggcgtgaa cgtcagcccg
     1081 ccgcgcgaat gcgccgcgag agcccgcacc atggtgtcgg caccgtgcat catcatgacg
     1141 tcgtggagct cgccggccgt ggtgttgggg ccgatctgca ccgtctccat catggcgatg
     1201 gggcctgtgt cgaggccctc ttccatccgc atgaccgcga ccccggtctc ggcgtccccg
     1261 gccatgacgg ctcgctggat cggggcggcg ccgcgccacc gcggcagcag cgaggcgtgc
     1321 aggttgaggc agccgagccg gggcgcgtcg aggatcggct tcggcaggat gagcccgtag
     1381 gcgacgacca cggcgacgtc cgcgtcgtga cggcggaacg tctcggccgc gtcttcgccg
     1441 cgcagggact tcggcgtcag aaccggaatg ccgaaacggt cggcgagccg gtgcaccggc
     1501 gagggcttca gctccatgcc tcgcccggcc gccgccgggg ctctcgtata gaccgcggcg
     1561 acctcatgcc cgtgcccgac gatctccgag agggtcggca cggcgaaatc cggcgtgccc
     1621 atgaagacga cgcgcaaggc gctcaccccg tcgcctcgcg cttcgccgcc ttggcaaact
     1681 tcttggtgac gcggtcgcgc ttcagcttcg acaggtggtc gatgaagagc acgccgttga
     1741 ggtggtcgat ctcgtgctgg acgcaagtgg ccatgaggcc gtcggcgtcg gcctcaaccg
     1801 tctcgccgtc gagcgtcctg tagcggaagc gcacgcgctc gggccgctcc acctcttcgt
     1861 agtactcggg gatcgagagg cagccttcct catagacgcg cgtgtcctcc gaggcccaca
     1921 ccacctcggg gttgatgagc accagggggt tgcgctcggt ctccgacttc gacacgtcca
     1981 tggtgatgac gcgcttcggc actccgatct ggattgcggc gagacccacg cccggggcgt
     2041 cgtacatggt gtcgagcatg tcctgcgcga gggtccggat gtcgtccgag acggccccga
     2101 ccggctcgga tttcaatcgc agacgggggt cgggaaggac gacgagggga cggatcggca
     2161 tgaccgggcc gagataagcg gtcgcccgaa accggtcaaa tcgcgacgtg gcgtgtggcg
     2221 ctcaggcgcg tgcgggctcg agcgcctggg cccggcggcg ctggcgcggc gccggggcgc
     2281 ggcgaacacg agcgacgaag ctgagcgcga ggcccacggc aaggacgtac cacgcggggc
     2341 ggatctcgta ctcgaaatcc aggttcgcgc cgagcaccaa ggcagcattg gcgcccgtcg
     2401 cggctgcgta ccagcccgcc tcgaggaggg cggtggccac cccggctgcg gccgcaagcg
     2461 ctacaaggcc gagagggccc tccggcagct cgaagcggcg gatgagacgg tatcccatga
     2521 gcagcaggaa gaagccgctc cagagcaccg gctgcgtgac gttcagcttc gcctgcagga
     2581 agtagtgcgc gagcgccagg accgcgatgg cgtagatcgc ccggtgcagg cggtgccagt
     2641 tggcgccgag ccgcctcatg gcggcgtcgg tcgaggtcgc gccaagcgca acgagtccca
     2701 cgagcgccgt gaagccgatg agaaggtaga tgcgcaggac aatctcggtc gcgatgcgcg
     2761 tgaggtc
//
LOCUS       DASQWN010000353         3054 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_656655, whole genome shotgun sequence.
ACCESSION   DASQWN010000353 DASQWN010000000
VERSION     DASQWN010000353.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 3054)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3054)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3054
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_656655"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..404)
                     /locus_tag="VE686_06705"
     CDS             complement(<1..404)
                     /locus_tag="VE686_06705"
                     /inference="COORDINATES: protein motif:HMM:NF012334.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HYY84174.1"
                     /translation="MDIRLDGRSAIVTGGSKGLGLAMATRYAASGADVAILARNPEAL
                     ERARAAISEKGRGRVVAIACDVSRADEIERAYATAVRELGKVDIVVNNAGTSQRGNFE
                     EITDEVWQADLDLKLFAAIRLTRLAWPDMKARG"
     gene            474..>3054
                     /locus_tag="VE686_06710"
     CDS             474..>3054
                     /locus_tag="VE686_06710"
                     /EC_number="1.2.4.2"
                     /inference="COORDINATES: protein motif:HMM:TIGR00239.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004591 - oxoglutarate dehydrogenase
                     (succinyl-transferring) activity [Evidence IEA];
                     GO_function: GO:0030976 - thiamine pyrophosphate binding
                     [Evidence IEA];
                     GO_process: GO:0006099 - tricarboxylic acid cycle
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoglutarate dehydrogenase E1 component"
                     /protein_id="HYY84175.1"
                     /translation="MRQATATRMGLEATSIQFLESLYQQYRADPASVEHSWRCVFDLA
                     RELGNDDAGPAADGGAAALLAEVVRQRGHLAAALDPLGRAPGDAEAFRRCLDAAPAGG
                     SDPGRLAALYRSSFTVETAHIDDPEMRAWVREAFEADRAPFSREELLRTHAKLVEAEE
                     FEAFLGRKHPTKKRFGAEGAESLFPLMDRLFRAAAHSGVEEIVAGPMHRGRTNLMANV
                     FGKPLPQVFAEFKGAHPFPADPPCAADVPYHLGAEAEHEVEGRRLRVTLCPNPSHLEA
                     VDPMVLGRVRARQDFRPEDQADRVLGLIFHSDAAVVGQGIVGETLQLGAVPGFATAGT
                     IHVVVNNQIGFTTEPSEGRTSRHCTGPFKAIDALIIHVNADDPDACLRAADLAVAFRQ
                     RFQRDAVIDLVCYRRNGHNELDEPRFTQPLAYAAIDAHPSARTGFEERLVAQDVLTAE
                     EAAAVAERYRARLQEAYDAAAEWRPNESAFPNGRWEPFRPRAAPVPEPDTGVPQDRLA
                     RLLAALAKPPAGVSVHSKVRRLVEQRAEAEGRGVPWSLGEALAFASLVTEGVPVRLTG
                     QDAVRGTFSSRHFGIVDVETGRRVSTIAQLEPGQAPFTILNSPLSEYGVLGFEYGYSL
                     ERPDALTIWEAQFGDFANGAQIMIDQFITSGEEKWLQPSGLVMLVPHGLEGQGPEHSS
                     ARPERYLQLAARDNIQVANPSTPANYFHLLRRQVLRRVRKPLVVLAPKTLLRLPAAVS
                     PLAEFGPGKRFAPVLASGPSVGARRILLCTGKIAYELERERAERGADDTLIVRLEMIY
                     PLPADALGPVLAASPDAALIFVQEEPENMGAWSWLRPRLEALAAAAGHRSPQPAYVGR
                     PESP"
BASE COUNT          406 a         1124 c         1083 g          441 t
ORIGIN      
        1 ccgcgcgcct tcatgtcggg ccaggcgagc cgggtcaggc ggatggcggc gaagagcttc
       61 aggtcgaggt cggcctgcca gacctcgtcg gtgatctcct cgaagttgcc gcgctgcgac
      121 gtccccgcat tgttgacgac gatgtcgact ttgccgagct cccgcaccgc ggtggcgtag
      181 gcgcgctcga tctcgtcggc cctggagacg tcgcacgcga tggcgacgac ccgcccgcgg
      241 cccttctcgg agatcgccgc gcgggcgcgc tcgagcgcct cggggttgcg ggcgaggatg
      301 gcgacatcgg cgcccgaggc cgcgtagcgg gtggccatcg cgagcccgag gcccttgctg
      361 ccccccgtca cgatcgcgct tcgtccgtcg agcctgatgt ccatgcggtg tcctcgtgcc
      421 agggcgcgtc cgtttgagcg ggcgcgccgc ctttgctacg agacagacgg gcggtgcggc
      481 aagcaacggc gacgcgaatg ggcctcgagg cgacgagcat ccagttcctg gagagcctgt
      541 accagcagta ccgggccgat ccggcctcgg tggagcacag ctggcgctgc gtgttcgacc
      601 ttgcccggga gctcgggaac gacgacgcag gtccggccgc cgacggcggc gctgcggcgc
      661 tgctcgcgga ggtcgtccgc cagcgcggcc atctcgccgc cgccctcgac ccgctcgggc
      721 gggcgcccgg cgacgccgag gccttccggc ggtgcctcga cgccgcgcct gctgggggaa
      781 gcgatccggg gcggctcgcc gcgctctatc gctcgtcgtt cacggtcgag acggcgcata
      841 tcgacgaccc ggagatgcgg gcctgggtgc gcgaagcctt cgaggccgac cgtgcgccct
      901 tctcgcgcga ggaactcctg cgcacgcacg cgaagctcgt cgaggcggaa gagttcgagg
      961 ccttcctggg ccgcaagcat ccgaccaaga agcgcttcgg cgcggagggc gccgagtcgc
     1021 tgttccccct catggaccgg ctcttccgcg ccgcggccca cagcggcgtc gaggagatcg
     1081 tcgccgggcc catgcaccgg ggccgcacga acctcatggc caacgtgttc ggcaagccgc
     1141 tgccgcaggt cttcgccgag ttcaagggcg cgcacccgtt cccggccgat ccgccctgcg
     1201 cggccgatgt gccctaccac ctcggcgccg aggcggagca cgaggtcgag ggccgccgtc
     1261 tgcgcgtgac cctgtgcccg aacccgtcgc acctcgaggc ggtggatccc atggtgctcg
     1321 ggcgggtgcg cgcgcggcag gacttccgcc ccgaggacca ggcggatcgc gtgctcggcc
     1381 tcatcttcca ctccgacgct gcggtcgtcg ggcaggggat cgtcggcgag acgctgcagc
     1441 tcggcgccgt gccgggcttc gccacggcgg gcacgatcca cgtcgtggtg aacaaccaga
     1501 tcggcttcac caccgagccg tcggaagggc gcacgtcgcg gcactgcacc gggccgttca
     1561 aggccatcga cgcgctcatc atccacgtca acgcggacga cccggatgcc tgcctgcgcg
     1621 ccgccgacct cgcggtcgcc ttccgccagc gcttccagcg cgatgccgtc atcgacctcg
     1681 tctgctaccg ccgcaacggc cacaacgagc tcgacgaacc gcgcttcacg cagccgctcg
     1741 cctacgcggc catcgacgcg catccctccg cgcgcaccgg cttcgaggaa cggctcgtgg
     1801 cccaggacgt cctcacggcc gaggaggccg cggcggtcgc cgagagatac cgggcgcggc
     1861 tgcaggaagc ctacgatgcc gccgcggagt ggcgcccgaa cgagagcgca tttccgaacg
     1921 ggcggtggga gccgttccgg ccgcgagccg ctcccgtgcc ggagccagac accggcgttc
     1981 cgcaggaccg cctcgcgcgc ctccttgccg cgctcgcgaa gccgcccgcc ggtgtctccg
     2041 tgcattcgaa ggtgcgccgc ctcgtcgagc agcgcgccga ggccgaaggg cgcggcgtgc
     2101 cgtggtccct tggcgaggcc ctcgccttcg cgtccctcgt gaccgagggt gtcccggtgc
     2161 ggctcaccgg gcaggacgcg gtgcgcggta ccttctcgag ccgccacttc ggcatcgtcg
     2221 acgtcgagac cgggcggcgc gtgtcgacga tcgcgcagct cgagccgggg caggcgccct
     2281 tcacgatcct gaacagcccg ctctccgagt acggcgtgct cgggttcgag tacggctaca
     2341 gcctcgagcg gccggacgcg ctgacgatct gggaggcgca gttcggcgac ttcgccaacg
     2401 gcgcgcagat catgatcgac cagttcatca caagcggcga agagaagtgg ctgcagccct
     2461 cggggctcgt catgctcgtg ccgcacgggc tggagggcca ggggccggag cattcctcgg
     2521 cgcggcccga gcgctatctg cagcttgccg cgcgcgacaa catccaggtc gccaatccct
     2581 cgacgccggc gaactacttc cacctgctgc gccggcaagt gctgcggcgt gtgcgaaagc
     2641 cccttgtggt gctcgcaccg aagacgctgc tgcgtctgcc cgccgccgtg tcgccgctcg
     2701 cggagttcgg cccgggcaag cggttcgcgc cggtgctcgc ctccgggcct tcggtaggcg
     2761 cgcgccgcat cctcctgtgc accggcaaga tcgcctacga gctcgagcgc gagcgggccg
     2821 agcgcggcgc cgacgatacg ctgatcgtcc gcctcgagat gatctatccc ttgccggccg
     2881 acgcgctcgg accggtgctg gccgcgtcac cggatgctgc cctgatcttc gtccaggagg
     2941 agccggagaa catgggcgcg tggtcgtggc tccggccgcg gctcgaggcg ctcgcggcag
     3001 ccgcgggaca ccgcagcccg cagccggctt atgtcggccg acccgagtcg ccgt
//
LOCUS       DASQWN010000354         7282 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_757075, whole genome shotgun sequence.
ACCESSION   DASQWN010000354 DASQWN010000000
VERSION     DASQWN010000354.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 7282)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7282)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7282
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_757075"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1282)
                     /locus_tag="VE686_06715"
     CDS             complement(<1..1282)
                     /locus_tag="VE686_06715"
                     /inference="COORDINATES: protein motif:HMM:NF018513.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0031317 - tripartite ATP-independent
                     periplasmic transporter complex [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0008643 - carbohydrate transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TRAP transporter large permease"
                     /protein_id="HYY84176.1"
                     /translation="MLALALFGSFAVLFALGTPVAVALGLAGTLAIYLADLNVLATPT
                     SAYTGIAKYPLLAVPMFVLVGAIFDRSGVALRLVNFTQALIGRKAGSLAAVTVIVSMF
                     LGGISGSGPANAAAVGGAMMGALSRAGYPRAFSASVIGAAAATDILIPPSIALIIYSV
                     LVPQASVPALFAAGMIPGILAGVALLVPIYWMSKKHGFGVAEKDLPRPPLWASFKEAI
                     WGLLAPVLILGGMRAGWFTPTEAAVMAVVYGLFVGFVIYRSLTLRDLYEMFVEAAEIS
                     GVILIVVALASIFGWAGATLGVFDRAAAAIVATGGSEYVILALLIVMLIVIGMFLDGV
                     STFLILLPLLMPIANRFNWDPVWFGILLTLKIAIGQFTPPMAVNLMVSCRIAGVPMEA
                     TLRWVFPLIAAMFVVLIAVVAFPQLALWLPGVLGY"
     gene            complement(1291..1827)
                     /locus_tag="VE686_06720"
     CDS             complement(1291..1827)
                     /locus_tag="VE686_06720"
                     /inference="COORDINATES: protein motif:HMM:NF016200.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0031317 - tripartite ATP-independent
                     periplasmic transporter complex [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0015740 - C4-dicarboxylate transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TRAP transporter small permease"
                     /protein_id="HYY84177.1"
                     /translation="MAVEPDPLLAPKEPETRVPLSIEKGIAAAAMAALCLITVGNVVA
                     RYLTNYSFAFTEEYSIALMVVVTVLGASYATAADRQIRITWFADLLPPQGRRIAEMLA
                     TLATIVMFGLLIVLGGKVVWDEYRFEVTSPGLGEPQWIYTLALPLLSAAVVGRAIGHG
                     IRVWRSSRPPEHHAIEPL"
     gene            complement(1893..2936)
                     /locus_tag="VE686_06725"
     CDS             complement(1893..2936)
                     /locus_tag="VE686_06725"
                     /inference="COORDINATES: protein motif:HMM:NF015445.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DctP family TRAP transporter solute-binding
                     subunit"
                     /protein_id="HYY84178.1"
                     /translation="MTFNPTRRGVVTGAGALALGLSAPWVARAQSYKPEYKISTVVGA
                     PFPWGLGAERWAAIVKEKSGGKINMKVYPGASLVGGDQTKEFTAMRQGVIDMAVGSTI
                     NWSPQVAELNLFSLPFLMPDHKAIDAITGGEAGKKLFEIIASKDVVPLAWGENGFREL
                     SNSKREVRKPEDLKGLKIRVVGSPLFNDTFTGLGANPTQMSWADAQPALSTGAVDGQE
                     NPLTIFTVAKLHTVGQKFVTLWGYVADPLIYSVNKDVFAAFSPADQKIVRDAAVEASV
                     YNKEIARKGITQADPSTLKEIEGLGVTVSKLSEAEVKAFRDATRPVYDKWKARVGNDL
                     VASAEKAISARSS"
     gene            complement(3050..4777)
                     /locus_tag="VE686_06730"
     CDS             complement(3050..4777)
                     /locus_tag="VE686_06730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018689609.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine pyrophosphate-binding protein"
                     /protein_id="HYY84179.1"
                     /translation="MSTNEMTGGEALARMIEAHKGGPMFGMGGFQLLPFYDAARRLGL
                     EHHLINDERAGAFAADAYGKVSGRVGLVDATLGPGATNLVTGLVEALNAGTAMVAIVG
                     DSHRMHSWKNMTQESRQTDILRPACKELIRIEHVERIPELMRRAFAVATTGRPGPVVV
                     DVPEDVCHATCPFEEGAFAANPAYEAAPALRCGPDRHSTARAAELLATAERPLVLAGG
                     GVHISAAADALSAFATELGIPVAHTMTGKGAIACTDPLNAGLFGRYDRIANGLMEEAD
                     VLLVIGCKLGEIATKRYTVPPRGKTLIHLDILAEEFGRTLQPDVALWGDARAGIEDLH
                     EALRADAQAGLARRKPWTERVARGMAEWRERTRERYTSEEVPVSMGRLIGELNRLMPA
                     DGILIADGGFAAHWGGLLYDTKQPGRGFVPDRGFASIGYGLPGAMGAALAAPERKVVS
                     ITGDGGFNMMLGELETARRMGLSFAIVVVNNAASGYVKALQHLMYGAGSYHASDLAET
                     NYAEVAKALGCTGIRVEDPGAVGPAIEQAFRTEGPVVIDVVVTRDPAKMLPAADNRAV
                     QVKKGDRVA"
     gene            complement(4822..5799)
                     /locus_tag="VE686_06735"
     CDS             complement(4822..5799)
                     /locus_tag="VE686_06735"
                     /EC_number="1.2.4.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008596890.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-ketoacid dehydrogenase subunit beta"
                     /protein_id="HYY84180.1"
                     /translation="MAVLTYGEASRAAIAEEMRRDATVWAVGEDLGRGGVFGQYKGLV
                     EEFGPERISDAPISEACIMGAAVGAAMMGTRPIVEMRFSDFALCAVDELVNQAAKARY
                     MFGGQTRVPLVVREPIGMWRSSAAQHSQSLEAWYAHIPGLVVVCPSTPADNKGLMKAA
                     IRCDDPVVYMEHKNLWGLEGEVPDGDDRLVPFGEARVVREGRDLTIVSWSAQVHACVT
                     AAEALATNGIDAEVLDLRTLWPWDKARVLASVEKTGRLLVVQEAVSVAGFGAEIAATV
                     AEHLHKALKAPVKRLGAPRIPISYAPPLEDTVRVTEAMVAAAAQALVRS"
     gene            complement(5799..6764)
                     /locus_tag="VE686_06740"
     CDS             complement(5799..6764)
                     /locus_tag="VE686_06740"
                     /inference="COORDINATES: protein motif:HMM:NF012880.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine pyrophosphate-dependent dehydrogenase
                     E1 component subunit alpha"
                     /protein_id="HYY84181.1"
                     /translation="MARLSAHHRLMWRIRAFEQQALQALADKLVLGAIHPSIGQEAVA
                     AGVCSNLEREDILLSTHRGHGHTLAKGADPLAMMRELFGREGGNCGGKGGSMHIADFG
                     VGMLGANGVVGANIVIAAGAAHAIKLKREPHVVCCIFGDGAINRGPFLEGLNWAKVFG
                     LPVLFVCEDNGFAATTRTKAMTAGEGPSARARSMGLPAVEIDGNDVLAVDAAAREMIE
                     AVREGGGPRFLHVHTYRLTGHTGADPATYRPQEEVEERWRDDPIGRAETLLQGAGADR
                     LDAARDEALAEMKHVYDVARDTPFPPVGEAYADVQDVGDPRREAF"
     gene            6925..>7282
                     /locus_tag="VE686_06745"
     CDS             6925..>7282
                     /locus_tag="VE686_06745"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY84182.1"
                     /translation="MPAVQPVAPGVIAADTITKLPPEAEGAVVVSGSHGGRYPGYLAA
                     KGGVRAAIFNDAGGGKDGAGFGSLSYLDALGIAAATVAHDSARIGDTDDMMARGRISA
                     LNEAAQGAGLIVGMACL"
BASE COUNT         1153 a         2513 c         2554 g         1062 t
ORIGIN      
        1 agtagccgag cacgcccggt agccagagag cgagctgagg gaacgcgacg accgcgatca
       61 gcaccacgaa catggccgca atgagcggga acacccagcg cagggtcgcc tccataggca
      121 ccccggcgat gcggcaggac accatgaggt tgaccgccat gggcggcgtg aactgtccga
      181 tggcgatctt cagggtgagc aggatgccga accacaccgg gtcccagttg aagcggttcg
      241 cgatcggcat gagcagcgga agcaggatca ggaaggtcga cacgccgtcg aggaacatgc
      301 cgatcacgat gagcatgacg atcaggagcg ccaggatgac gtactcgctg ccgccggtcg
      361 cgacgatcgc cgcggcagcg cggtcgaaca cgccgagcgt cgcgccggcc cagccgaaga
      421 tcgaggcgag cgcgacgacg atgaggatga cgcccgagat ctccgccgcc tcgacgaaca
      481 tctcgtagag gtcgcgcagg gtgagcgagc gataaatgac gaagccgacg aagaggccgt
      541 agacgacggc catcacggcg gcctcggtcg gggtgaacca gccggcgcgc atgccgccga
      601 ggatcagcac cggggcaagc aacccccaga tggcttcctt gaagctcgcc cacaggggcg
      661 gacgcggcag gtccttctcg gccacaccga agccgtgctt cttcgacatc cagtagatcg
      721 gcacgaggag cgcgacgccg gcgaggatgc ccgggatcat gccggccgcg aacagcgccg
      781 gaacggacgc ctggggcacc agcacgctgt agatgatgag cgcgatcgag ggcgggatca
      841 ggatgtcggt tgccgccgcc gcgccgatta cgctcgccga gaaggcgcgc ggatagccgg
      901 cgcgggagag cgcgcccatc atggccccgc caacggccgc ggcgttggcg ggccccgagc
      961 ccgagatgcc gccgaggaac atgctcacga tcaccgtcac ggccgcgagg gagccagcct
     1021 tgcgcccgat gagcgcctgc gtgaagttga ccagcctgag cgccaccccg gagcggtcga
     1081 agatggcgcc gacgagcacg aacatgggca cggcaagcag cgggtacttg gcgatccccg
     1141 tgtatgcact cgtcggtgtc gcgagcacgt tgaggtcggc gagatagatc gcgagggtcc
     1201 ccgcgaggcc gagcgccacg gcgacgggcg tgccgagcgc gaacagaacc gcgaaagaac
     1261 cgaagagagc gagagccagc attgccgagg tcacagaggc tcgatggcgt ggtgctcggg
     1321 aggccggctg ctgcgccaca cgcgaatgcc atggccgatg gcccgcccga ccaccgccgc
     1381 cgagagcagc ggcagggcga gcgtgtagat ccactgcggc tcgcctaagc ccggggaggt
     1441 cacctcgaag cggtactcgt cccacaccac cttgccgccg aggacgatga gcaggccgaa
     1501 catcacgatg gtcgcgagcg tcgcgagcat ctcggcgatg cgccggcctt gcggcggcag
     1561 gaggtcggcg aaccaggtga tgcggatctg gcggtcggcg gcggtcgcgt agctggcgcc
     1621 gagaaccgtc acgaccacca tcagcgcaat cgaatattcc tcggtgaagg cgaaggagta
     1681 gttggtgagg tagcgcgcaa cgacgttgcc gaccgtgatg aggcacagcg ccgccatcgc
     1741 ggcagccgca atgcccttct cgatcgagag gggcacgcgc gtctctggct ccttcggggc
     1801 gagaagcgga tcgggttcta cggccatggc gaaaagcctg agacgaaaac gaaagggcgg
     1861 gccctggccc gccctcccga ccttgccggc cgttagctgc tgcgggccga gatggccttc
     1921 tcggcgctcg cgacgaggtc gttgccgacg cgcgccttcc acttgtcgta caccgggcgc
     1981 gtcgcgtcgc ggaacgcctt cacctcggcc tccgagagct tgctcaccgt gacgccgagc
     2041 ccctcgattt ccttgagcgt cgaagggtcg gcctgggtga tgcccttgcg ggcgatctcc
     2101 ttgttgtaga ccgaggcctc gacagcggca tcgcgcacga tcttctggtc cgccggcgag
     2161 aacgccgcga agacatcctt gttgaccgag tagatcaacg ggtcagcgac gtagccccac
     2221 agggtcacaa acttctggcc gacggtgtgc agcttcgcca ccgtgaagat ggtaagcggg
     2281 ttctcctggc cgtcgacggc acccgtcgaa agggcaggct gcgcgtcggc ccagctcatc
     2341 tgggtcggat tggcgccgag ccccgtaaag gtgtcgttga acaggggcga gccgacgacg
     2401 cggatcttca gacctttgag gtcctcgggc ttgcgcacct cccgcttcga gttcgacagc
     2461 tcgcggaagc cgttctcgcc ccaggcgagc ggcacgacgt ccttggatgc gatgatctcg
     2521 aacagcttct tgccggcctc gccgcccgta atcgcgtcga tggccttgtg gtcgggcatg
     2581 aggaagggca gcgagaacag gttgagctcc gccacctgcg gcgaccagtt gatggtcgag
     2641 cctaccgcca tgtcgatcac gccctggcgc atggcggtga attccttggt ctgatcgccg
     2701 ccgaccagcg aggcgccggg atagaccttc atgttgatct tgccgccgga cttctccttg
     2761 acgatggcgg cccaccgctc ggcgccgagg ccccacggga acggcgcgcc gacgacagtc
     2821 gagatcttgt actcgggctt gtagctctgc gcgcgggcga cccagggggc agacagccct
     2881 agtgcgagcg cgccggcgcc ggtgacgacg ccacgacggg tcggattgaa tgtcatcggt
     2941 ggacctccct cttgtcttcg tgctgctgct cttccacgcc gtgcgcgggc cgagcgcggc
     3001 ttggcgttgg cttagcgcat cgcggggccc aatgcctagt ggcagcggct caagctaccc
     3061 ggtcgccctt cttgacctgg acggcccggt tgtctgcggc ggggagcatc ttcgccgggt
     3121 cgcgggtgac cacgacgtcg atcacgaccg ggccctccgt acggaacgcc tgctcgatcg
     3181 ccggcccgac cgcgccggga tcctcgacgc ggatgccggt gcagccgagg gccttcgcga
     3241 cctcggcgta gttcgtctcg gcaaggtccg aggcgtgata cgacccggcg ccgtacatga
     3301 ggtgctggag cgccttgacg tagcccgatg ccgcgttgtt gacgaccacg atggcgaacg
     3361 agagacccat ccggcgcgcc gtctcgagct cgccgagcat catgttgaag ccgccgtcgc
     3421 ccgtgatgct gacgaccttg cgctcgggcg ccgcgagcgc cgcgcccatg gcgcccggca
     3481 gaccgtagcc gatcgaggca aagccgcggt ccggcacgaa gccgcgcccg ggctgcttgg
     3541 tgtcgtacag gagcccgccc caatgggccg cgaatccgcc gtcggcgatg aggatgccgt
     3601 ccgccggcat gaggcgattg agctcgccta tgagccggcc catggacacc ggaacctcct
     3661 cggaggtgta gcgctcccgc gtgcgctcgc gccattcggc catgccgcgg gccacgcgct
     3721 cggtccaggg cttgcggcgg gcgaggccgg cctgagcgtc ggcacgcagt gcctcgtgga
     3781 gatcctcgat cccggcccgg gcgtcgcccc agagcgccac gtccggctgg agcgtgcggc
     3841 cgaactcctc cgccaggatg tcgaggtgga tcagggtctt gccgcgcggc ggaacggtat
     3901 agcgcttggt cgcgatctcg ccgagcttgc agccgatgac gagcagcacg tcggcctcct
     3961 ccatgaggcc gttggcgatg cggtcgtagc ggccgaacag gccggcgttg agagggtccg
     4021 tgcaggcgat ggcacccttg cccgtcatgg tgtgcgcgac cgggatgccg agttccgtcg
     4081 cgaatgcact cagcgcgtcc gccgcggcgc tgatgtgcac gccgccgccg gccagcacga
     4141 gggggcgctc cgccgtcgcg aggagctccg cggcgcgagc ggtcgagtgg cggtccggcc
     4201 cgcagcgcag ggccggcgcg gcctcgtagg cggggttcgc cgcgaacgcg ccttcctcga
     4261 acgggcaggt ggcgtgacag acgtcctcag gtacgtcgac gacgaccgga cccggccgac
     4321 cggtggtcgc caccgcaaag gcgcggcgca tcagctccgg gatgcgctcc acgtgctcga
     4381 tgcggatgag ctccttgcag gccgggcgca ggatgtcggt ctggcgcgac tcctgggtca
     4441 tgttcttcca ggagtgcatg cggtgggaat cgccgacgat ggcgaccatc gccgtgccgg
     4501 cgttgagcgc ctcgacgagg ccggtgacga ggttcgtcgc cccagggccc agggtcgcgt
     4561 cgaccaagcc gacccggccc gataccttgc cgtaggcgtc ggccgcgaaa gcccctgccc
     4621 gctcatcgtt gataagatgg tgctcgaggc cgagccgccg cgccgcgtcg tagaacggaa
     4681 gcagctggaa gccgcccatc ccgaacatcg gcccaccctt atgggcctcg atcatgcggg
     4741 cgagcgcctc gcccccggtc atctcgttcg tcgacatgtg ctctccctag tctcctctcc
     4801 cggcgaggcg ggacgggagc ttcagctcct caccaacgcc tgcgcggcgg cagcgaccat
     4861 ggcttccgtc acccgcaccg tatcctccag cggcggggcg taagagatcg ggatgcgggg
     4921 cgcgccgaga cgcttcacgg gcgccttcag cgccttgtgc aggtgctcgg cgaccgtcgc
     4981 ggcgatctcg gcgccgaagc cggcgaccga cacggcctcc tgcaccacca gcaggcgccc
     5041 ggtcttctcg acgctcgcaa gcacgcgcgc cttgtcccac ggccacaggg tgcgaaggtc
     5101 cagcacctcg gcgtcgatgc cgttcgttgc gagggcctcc gcggccgtga cgcaggcatg
     5161 cacctgcgcc gaccaggaca cgatggtgag gtcgcgtccc tcgcgcacga cgcgcgcctc
     5221 gccgaacggc accagtctat cgtcgccgtc gggcacctcg ccctccaggc cccaaaggtt
     5281 tttgtgctcc atgtagacga cggggtcgtc gcagcggatc gcggccttca tcagcccttt
     5341 gttgtccgcc ggcgtcgatg gacacacgac gacgaggccc gggatgtgcg cgtaccacgc
     5401 ctcgagggac tgcgagtgct gggccgcgga ggagcgccac atgccgatcg gctcgcggac
     5461 cacgaggggc acgcgcgtct ggccgccgaa catgtagcgc gccttggcgg cctggttgac
     5521 gagctcgtcc acggcgcaga gggcgaaatc cgaaaaccgc atctcgacga tcggccgcgt
     5581 gcccatcatg gcagcgccca ccgcggcgcc catgatgcag gcctcggaaa tgggcgcgtc
     5641 cgagatccgc tccggcccga actcctcgac gaggcccttg tactggccga agacgccgcc
     5701 gcggccgagg tcctcgccga cggcccacac cgtcgcgtcg cgccgcatct cctcggcgat
     5761 cgcagcacgc gacgcctcgc cgtaggtcag caccgccatc agaacgcctc ccggcgagga
     5821 tcgccgacat cctgaacatc agcgtacgcc tcgccgacgg gcgggaacgg cgtatcgcgg
     5881 gcgacatcgt agacgtgctt catttcggcg agcgcctcgt cgcgcgcggc gtcgagccga
     5941 tccgcgccgg cgccctgcag aagcgtctcg gcccggccga tggggtcgtc gcgccagcgc
     6001 tcctcgacct cctcctgcgg ccggtaggtc gcggggtcgg cgccggtgtg gccggtgagc
     6061 cggtaggtgt gaacgtgcag gaaccggggg cccccgccct cccggaccgc ctcgatcatc
     6121 tcccgggctg cggcgtcgac ggcgagcacg tcgttgccgt cgatctcgac ggcgggcagg
     6181 cccatgctgc gcgctcgcgc cgaagggccc tccccggccg tcatggcctt cgtccgcgtc
     6241 gtcgccgcaa agccgttgtc ctcgcacacg aacaggaccg gcagcccgaa gaccttggcc
     6301 cagttgaggc cctcgaggaa cggtccgcgg ttgatggcgc cgtcgccgaa gatgcagcac
     6361 acgacgtgcg gctctcgctt gagcttgatc gcgtgggcgg cgcccgcggc aatgacgatg
     6421 ttggcgccga cgacaccatt cgcgcccagc atccccaccc cgaagtcggc gatgtgcatc
     6481 gagccgccct tgccgccgca gttgccgccc tcgcgaccga acagctcgcg catcatggcg
     6541 aggggatcgg cgcccttggc cagggtgtgg ccgtgaccgc ggtgggtcga gagcaggatg
     6601 tcctcgcgct cgaggttcga gcacacgccc gccgcgacgg cctcctgacc gatcgagggg
     6661 tgaatcgcgc cgagcacgag cttgtccgcg agcgcctgga gcgcctgctg ctcgaacgcg
     6721 cggatgcgcc acataagacg gtggtgggcg gacagtcgcg ccacgtcgag gttgcgcgcg
     6781 ggcgcggagc gcgcgctgtg ggccgaacgc ttccctgaag ccactggtcc cccgggccgc
     6841 ttcgggcggc ttgtctgacg tctgatttcg gcggacatct acggggcctg cactcgccgc
     6901 gtcaacaatc ggagcctttg cgacatgcct gccgtccagc cggtcgcacc gggcgtgatc
     6961 gccgccgaca ccatcaccaa gctccctccc gaggccgagg gcgcagtggt ggtgtcgggc
     7021 tcgcacggcg ggcgctatcc gggctacctc gccgccaagg gcggcgtgcg ggcggcgatc
     7081 ttcaacgacg ccggcggcgg caaggacggg gcgggcttcg gctccctttc ctatctcgac
     7141 gccctcggca tcgcggccgc gaccgtcgcg cacgacagcg cccgcatcgg cgacacggac
     7201 gacatgatgg cgcgcggccg catcagcgcg ctgaacgagg ccgcgcaggg cgccggcttg
     7261 atcgtcggaa tggcgtgcct cg
//
LOCUS       DASQWN010000355         2308 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_757331, whole genome shotgun sequence.
ACCESSION   DASQWN010000355 DASQWN010000000
VERSION     DASQWN010000355.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2308)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2308)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2308
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_757331"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            151..1023
                     /locus_tag="VE686_06750"
     CDS             151..1023
                     /locus_tag="VE686_06750"
                     /EC_number="1.1.1.290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009734551.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HYY84183.1"
                     /translation="MSLFVFGLGYSARAFVDRERRRFDRMVATVTSAEKAERLAAECI
                     DARVFGPEGRDPRIPDDLRDARALLVSIPPGEDGDPALAAYADAIAAAPRLAWIGYLS
                     TVGVYGDHGGAWIDEATPPSPTSARSRSRLAAEEAWLALGRRAGKPVQVFRLAGIYGP
                     RRNPLAQLAAGTATRIVKPGQVFNRIHVDDIAAALAASIDRPRAGAVYNVADDEPAPP
                     QDVVAHAARLAGVEPPPEIPFDQASLSPMARSFYAETKRVSNRLLKQELGLTLRYPTY
                     REGLAALRTAGEGP"
     gene            complement(1029..2015)
                     /locus_tag="VE686_06755"
     CDS             complement(1029..2015)
                     /locus_tag="VE686_06755"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018041675.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acyltransferase"
                     /protein_id="HYY84184.1"
                     /translation="MTTQRRTFPLQPVGGMGSAFAPVPGFGLLRPLCKGGAIRWLPGL
                     TGRGVAAARDRHGLDPVLGRLGSLEVRLATTAKEIRRAQRLRFKVFYDEMAAAANGAS
                     LLARRDVDEYDAICDHLLVLDHDVKPGAFRSARPRVVGTYRLLRQDMADRHFGFYSAG
                     EYDVAPLLDAKPGMRFLELGRSCVLGPYRTKRTVELLWHGIWTYVLHHRMDAMIGCAS
                     LEGTDPSKLALPLSFLHHYARAPEIWRARARPERYVPMDLLSKEAVDPKTAVRALPPL
                     IKGYLRVGATFGDGAVVDRQFNTTDVFVVLPVAAIAPRYIEHFGATADRHAA"
     gene            complement(2128..>2308)
                     /locus_tag="VE686_06760"
     CDS             complement(2128..>2308)
                     /locus_tag="VE686_06760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015914798.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY84185.1"
                     /translation="RDLGVSPPCRIVALTANASDDDEAAARAAGLDGFIAKPFALETL
                     RDLVGEVAPGIAKAS"
BASE COUNT          333 a          837 c          814 g          324 t
ORIGIN      
        1 tgcctgcttc tcgtcctgat caacgtcttc accggccttc acacgatctg gttccactgg
       61 cccgtcacgc cgatgctcct ggtcgccggc gcgggtgcta tccgccggcg ccgcgcgccc
      121 gggccgacgg gctgacccgc gcccgccgtc gtgagcctgt tcgtcttcgg cctcggctac
      181 agcgcgcgcg ccttcgtgga ccgggagcgc aggcgcttcg atcggatggt cgcaaccgtc
      241 acctcggccg agaaggctga gcgccttgcg gccgagtgca tcgatgcgcg cgtgttcggg
      301 ccggaagggc gcgatccccg catccccgac gatcttcgcg acgcgcgcgc cctcctggtc
      361 tcgatcccgc ccggggagga cggcgaccct gcgctcgccg cctacgccga tgccattgcg
      421 gcggcgccgc gccttgcatg gatcggctac ctctcgaccg tcggcgtgta cggcgaccac
      481 ggcggggcgt ggatcgacga ggcgacgcct cccagtccga caagcgcgcg ctcgcgcagc
      541 cgcctcgccg ccgaggaggc ctggctggcg ctcggccgcc gcgcgggcaa gcccgtgcag
      601 gtgttccggc tggcgggaat ctacgggcct cgccgcaacc cgctcgccca gctcgcggcc
      661 ggcacggcga cgcgcatcgt caagccgggc caggtcttca accgcatcca cgtcgacgac
      721 atcgccgcgg cgctcgccgc ctcaatcgac cgcccgcgcg ctggcgcggt ctacaacgtg
      781 gcggacgacg agcccgctcc gccgcaggac gtcgtcgctc acgcggcgcg gctcgcaggc
      841 gtcgagccgc cacccgagat tccgttcgac caggcgtcct tgagtccgat ggcgcgcagc
      901 ttctacgccg agacgaaacg cgtctcgaac cggctgctca agcaggagct cggtctcacg
      961 ctgcggtacc cgacctaccg tgagggcctc gccgccctgc gcaccgcagg cgaaggtccc
     1021 tgacgccctc aggccgcatg acggtccgcc gtggcgccga agtgctcgat gtagcgcggc
     1081 gcaatggcgg cgaccggaag cacgacgaac acgtccgtgg tgttgaactg acggtcgacg
     1141 acggcgccgt ctccgaaggt cgccccgacg cgcagatagc ccttgatgag ggggggcagc
     1201 gcccgcacgg cggtcttcgg atccaccgcc tccttgctta ggaggtccat gggcacgtag
     1261 cgctcgggcc gcgcgcgggc acgccagatc tcgggcgcac gggcgtagtg gtggagaaag
     1321 ctcaagggca gggcgagctt gctcgggtcg gtgccttcca ggctcgcgca cccgatcatg
     1381 gcgtccatgc gatggtgcag gacgtaggtc cagatgccgt gccagaggag ctcgacggtg
     1441 cgcttggtgc ggtacgggcc gagcacgcac gagcgcccga gctcgaggaa acgcatgccc
     1501 ggcttcgcat cgaggagcgg cgcgacgtcg tattcaccgg cggagtagaa gccgaagtgc
     1561 cggtctgcca tgtcctggcg cagcagccgg tacgtgccga cgacgcgcgg cctcgccgag
     1621 cggaatgcgc cgggcttcac gtcgtgatcg aggaccagaa gatggtcgca gatggcgtcg
     1681 tactcgtcga cgtcgcggcg cgcgagcagc gaggcgccgt tcgcggccgc cgccatctcg
     1741 tcgtagaaga ccttgaagcg cagccgctgc gcccgccgga tttccttcgc ggtggtcgcg
     1801 agccgcacct cgagcgaacc gagccgcccg agcaccggat cgagcccatg ccggtctcgc
     1861 gcggcggcga cgccgcggcc cgtgagtccc gggagccagc ggatcgcacc gcccttgcag
     1921 agcgggcgca agaggccgaa gccaggaacg ggcgcaaagg cgctgcccat gccgcctaca
     1981 ggctgcagcg gaaacgtccg ccgttgcgtc gtcatcggag cctcgctcgg cggtctgccc
     2041 cgtcgcgaac acgcgacccg cctaactgca gggcatcata aaggtatgac cgcttcgtga
     2101 caaacctggc cgctgcctcg cgcgggttca gctcgccttg gcgatcccgg gcgcgacctc
     2161 gccgacgagg tcccgcaggg tctcgagcgc gaacggcttg gcgatgaacc catcgaggcc
     2221 cgcggcgcgg gcggcggcct cgtcgtcatc cgaggcattg gcggtgagcg ccacgatgcg
     2281 gcagggcggc gacacgccga ggtcgcgc
//
LOCUS       DASQWN010000356         2349 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1252910, whole genome shotgun sequence.
ACCESSION   DASQWN010000356 DASQWN010000000
VERSION     DASQWN010000356.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2349)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2349)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2349
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1252910"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..500
                     /locus_tag="VE686_06765"
     CDS             <1..500
                     /locus_tag="VE686_06765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011996141.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="tripartite tricarboxylate transporter TctB
                     family protein"
                     /protein_id="HYY84186.1"
                     /translation="HPEQGEHTVSNRAMELVVSGLFIAASILVMYDNWRIGARWMEDG
                     PQAGYFPFYIGLIMLIASAVTFATNLAATAAGSASFVDRSQLKQVLQVLVPTIIFVIL
                     IGFIGIYFAAAIFIAFFMSWLGKYPFYTIAPVAIAVPLFLFFMFEIWFLVPLPKGPVE
                     TALGY"
     gene            571..2304
                     /locus_tag="VE686_06770"
     CDS             571..2304
                     /locus_tag="VE686_06770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011502443.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tripartite tricarboxylate transporter permease"
                     /protein_id="HYY84187.1"
                     /translation="MEALSSLIHGFGVLADPMNIVYMFVGIFLGVLIGVLPGLGGANG
                     VAILLPLTFSMSPVSAIIMLSSIYWGALFGGAITSILFNIPGEPWSVATTFDGYPMAQ
                     KGRAGEALATAFTGSFFGAFVATLLLTFLAPLIARFALQFGPAEFFSVYLLTFCSFVG
                     MGKESPFKVIAAMMLGFALAAVGLDTVTGQLRMTFGSTELLRGFDFLVAVIGLFGVGE
                     ILLTMEEGLAFKGKSAKINMRVVIQTWKELPQYWLTAMRGAIVGCWMGITPGGATPAS
                     FMSYGLAKRFSRNGHKFGTGEVEGVLAPETAAHAAGTSALLPMLTLGIPGSPTAAVLL
                     GGLLIWGLQPGPLLFVEQKDFVWGLIASMYLGNLAGLIVVLTTVPLFASILRIPFSII
                     APVIVVICAIGAFTVHNAMLDVWLMLLFVEQKDFVWGLIASIYLGNIAGLIVVLTTVP
                     LFAAILRVPFSIIAPIILVICAVGAYTVHNALLDISVMLVFGVIGYVFKKLGYPLAPL
                     VLALVLGDMAESSFRQAMLVSQGNVGIFWSNPLVATIVTLALVMLFWPVLSALRDKVG
                     GRRAADVTPGQ"
BASE COUNT          319 a          817 c          721 g          492 t
ORIGIN      
        1 cgcaccccga acaaggcgag cataccgtct ccaaccgcgc catggagctc gtggtctcgg
       61 gactcttcat cgccgcgtcg atcctcgtca tgtacgacaa ctggcgcatc ggcgcgcgct
      121 ggatggagga cggcccgcag gcgggctatt tccccttcta catcgggctg atcatgctca
      181 tcgcgagcgc ggtgaccttc gccacgaacc ttgccgcgac ggcggccgga tcggcttcct
      241 tcgtcgatcg aagccagctg aagcaggtgc ttcaggtgct cgtcccgacg atcatcttcg
      301 tcatcctgat cggcttcatc ggcatctatt tcgccgccgc gatcttcatc gccttcttca
      361 tgtcgtggct cggcaagtac ccgttctaca cgatcgcgcc cgtcgcgatc gccgtccctc
      421 tgttcctgtt cttcatgttc gagatctggt tcctggtgcc gctgccgaag gggccggtcg
      481 agacggcgct tgggtactga ccgccaagga tccgccgacc ggtcgcgggc gcctcgcccg
      541 acacatcgcc aaggctgacg ggagaaacgc gtggaagctc tgtcgtccct gatccacggc
      601 ttcggtgttc tcgccgaccc gatgaacatc gtctacatgt tcgtcgggat cttcctcggc
      661 gtgcttatcg gtgtcctgcc ggggctcggc ggcgccaacg gcgtcgcgat ccttctccca
      721 ctgacgttct cgatgtcgcc ggtctcggcg atcatcatgc tgtcctcgat ctattggggc
      781 gcgctgttcg gcggcgccat cacgtcgatc ctgttcaata tccccggcga accgtggtcc
      841 gtcgccacca ccttcgacgg ctatcccatg gcccagaagg gccgcgccgg agaggccctg
      901 gcgacggcct tcacgggttc gttcttcggc gccttcgtgg cgacgctgct cctcaccttc
      961 ctggctcccc tgatcgcccg tttcgccctg cagttcgggc cggccgagtt cttctcggtc
     1021 tatctcctga cgttctgcag cttcgtcggc atgggcaagg aatcgccctt caaggtcatc
     1081 gcggcgatga tgctcgggtt cgcgctcgcg gcggtcggcc tcgacaccgt cacgggccag
     1141 ctccggatga cgttcggatc caccgagctc ctgcgcggct tcgacttcct cgtcgccgtg
     1201 atcggcctgt tcggcgtggg cgagatcctg ctcaccatgg aggagggcct cgccttcaag
     1261 ggcaagtcgg cgaagatcaa catgcgcgtg gtgatccaga cctggaagga gctgccgcag
     1321 tactggctca cggccatgcg cggtgccatc gtcggatgct ggatgggcat cacgccgggc
     1381 ggcgcgacac cggcgtcctt catgagctac ggcctcgcca agcgcttctc gcgcaacggc
     1441 cacaagttcg gcaccggcga ggtcgaaggc gtgctcgcgc cggagacggc ggcccacgcc
     1501 gccggaacga gcgcgctcct gcccatgctg acgctcggca tccccgggtc cccgaccgcc
     1561 gcggtgctgc tcggcggcct cctcatctgg ggccttcagc ccgggccctt gctgttcgtc
     1621 gaacagaagg acttcgtctg gggcctcatc gcctcgatgt acctgggcaa cctggccggc
     1681 ctgatcgtgg tgctcacgac ggtgccgctg ttcgccagca tcctgcgcat ccccttctcg
     1741 atcatcgccc ccgtcatcgt ggtgatctgc gcgatcggcg cattcacggt gcacaacgcg
     1801 atgctggacg tgtggctcat gctgctgttc gtcgagcaga aggacttcgt ctggggcctg
     1861 atcgcctcga tctacctcgg caacatcgcc gggctcatcg tcgtgctgac gaccgtgccg
     1921 ctgttcgccg cgatcctgag ggtgccgttc agcatcatcg cgccgatcat cctcgtgatc
     1981 tgcgccgtcg gcgcctacac ggtccacaac gcgcttctcg acatctccgt gatgctggtc
     2041 ttcggcgtga tcggctacgt gttcaagaag ctcgggtatc ccctcgcacc cctcgtgctt
     2101 gcgctcgtgc tcggcgacat ggccgagagc tcgttccgcc aggcgatgct ggtctcgcag
     2161 ggcaacgtcg ggatcttctg gtcgaaccct ctcgtcgcca ccatcgtgac cctcgcgctg
     2221 gtcatgctgt tctggcccgt gctttcggcc ctccgcgaca aggtcggtgg gcggcgcgca
     2281 gcggacgtca cgcctgggca ataggtgggg cgggctcgcg gccagattag aacggctcta
     2341 acctgctgt
//
LOCUS       DASQWN010000357         2677 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_757714, whole genome shotgun sequence.
ACCESSION   DASQWN010000357 DASQWN010000000
VERSION     DASQWN010000357.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2677)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2677)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2677
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_757714"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(57..674)
                     /locus_tag="VE686_06775"
     CDS             complement(57..674)
                     /locus_tag="VE686_06775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007559730.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2155 domain-containing protein"
                     /protein_id="HYY84188.1"
                     /translation="MLRRPLRLAGALALAAFGAAGGAQADKLKNPTAVFSGLDKITGR
                     IISFEVAVDETVQFGALQLTPRVCYTRPPTENANTTAFLEVDEVTLESKYRRIFTGWM
                     FASSPGLHAVEHSVYDVWLTDCKGGSQIIAEPKDEDAVPLTPRERERTRRTAEQQRRT
                     SPTVAEGPGGRIDVTPPRGTPVQPQQQPSRRFFPTNAPSGYDPAR"
     gene            806..1621
                     /locus_tag="VE686_06780"
     CDS             806..1621
                     /locus_tag="VE686_06780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020180772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HYY84189.1"
                     /translation="MPSPFRLDLSGQVAVVTGASSGIGAAIARMLGAAGAAVAVNYRG
                     HREGADEVVAAVRAAGGLAEAIAADVSQEDDVERLFARTVEAFGTVHILVANAGLQRD
                     APAHELSLADWRQVIDVNLTGQFLCCRAAIREYLRRGRQPEVSRALGKIICISSVHEV
                     IPWAGHVNYAASKGGVMLMMKTLAQEYAERGIRVNGIAPGAIKTAINRDAWETPEAEA
                     ALLRLIPYGRVGDPDDIAKAALWLASDESDYVNGASLFVDGAMTLYPEFREGG"
     gene            complement(1630..1923)
                     /locus_tag="VE686_06785"
     CDS             complement(1630..1923)
                     /locus_tag="VE686_06785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019170931.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupin domain-containing protein"
                     /protein_id="HYY84190.1"
                     /translation="MARPAATPEVLIDNDRVVVTKWSFVEGAETGWHRHGHDYVVVPL
                     ADGKLILDEPGGTTREAPMTSGVPYFRPEGVEHNVINGSGGPFAFLEVEIKRP"
     gene            complement(1928..2344)
                     /locus_tag="VE686_06790"
     CDS             complement(1928..2344)
                     /locus_tag="VE686_06790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020091666.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0010257 - NADH dehydrogenase complex
                     assembly [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH:ubiquinone oxidoreductase subunit NDUFA12"
                     /protein_id="HYY84191.1"
                     /translation="MSFKDFFTQVFTWWNGQTIGTRFYTWRFGQFVGEDEFGNRYYRA
                     QGHVIDSSVGSERRWVVYNGEAEFSKVPPGWRGWLSHTYALPPTEESYAARPWEMPHV
                     PNMTGTPAAYRPRGSLLSSGTRPAATGDYVPWTPKE"
BASE COUNT          393 a          902 c          970 g          412 t
ORIGIN      
        1 ctctcggacg ccgcatccta catcagcggc accatcttgc gcgtgagcgg cgcgcgctag
       61 cgggcggggt cgtagccgga cggcgcgttc gtcgggaaga agcggcgcga gggctgctgc
      121 tgcggctgca ccggcgtgcc gcgcggcggc gtcacgtcga tgcgcccgcc cggaccttcg
      181 gcgacggtcg gcgaggtgcg gcgctgctgc tcggccgtgc gccgcgtgcg ctcgcgttcg
      241 cgcggcgtga gcgggaccgc gtcctcgtcc ttcggctcgg cgatgatctg cgagccgcct
      301 ttgcagtcgg tcagccacac gtcgtagacc gagtgctcga ccgcgtgcag gcccgggctc
      361 gaggcgaaca tccagcccgt gaagatgcgc cggtacttgc tctcgagggt gacctcgtcg
      421 acctcgagga aagccgtggt gttggcgttc tcggtcggcg gccgcgtgta gcagacccgc
      481 ggcgtgagct gcagcgcccc gaactgcacg gtctcgtcga cggcgacctc gaacgagatg
      541 atccggcccg tgatcttgtc gagcccggag aacacggcgg tcgggttctt cagcttgtcg
      601 gcttgtgccc cgcccgcggc gccgaaagcg gcgagcgcca gcgcgcccgc gagccgcaga
      661 ggtcgtctca gcatcgacac gtccgttccg aatctggggg gaggtcggcg cgccggcctc
      721 gtgctgcccg cgttaacacg tgaaccatgt tggaaaaagg gcgttcctgt gcggcagccg
      781 ccggggctgc aggagaccgt cgccgatgcc gagccccttc cgtctcgacc tctcgggcca
      841 ggtcgccgtg gtgaccggcg cgagctcagg cattggcgcg gcgatcgcca ggatgctcgg
      901 ggcggcgggc gccgcggtcg ccgtcaacta ccgcggccac cgggagggag ccgacgaggt
      961 cgtcgccgcg gttcgagccg ccggcgggct ggccgaggcc atcgccgcag acgtgtcaca
     1021 ggaggacgac gtcgagcggc ttttcgcccg cacggtcgag gccttcggca cggtgcacat
     1081 cctcgtcgcc aacgccggcc tgcagcgcga cgcgccggcg cacgagctgt cgctcgccga
     1141 ctggcgccag gtcatcgacg tgaacctcac cgggcagttc ctgtgctgcc gcgccgccat
     1201 ccgcgagtac ctgcgccggg ggcggcagcc ggaggtctcg cgcgcgctcg gcaagatcat
     1261 ctgcatctct tcggtgcacg aggtcatccc ctgggcgggg cacgtgaact acgccgcctc
     1321 gaagggcggc gtgatgctga tgatgaagac gctggcgcag gagtatgccg aacggggcat
     1381 tcgcgtgaac ggcatcgcgc cgggcgccat caagaccgcc atcaaccgcg acgcctggga
     1441 gacgccggag gccgaggccg cgctcctgag gctcatcccc tacggccgcg tcggcgaccc
     1501 cgacgacatc gccaaggcgg ccctgtggct cgcctcggac gagagcgact acgtcaacgg
     1561 cgcaagcctg ttcgtcgacg gagccatgac cctctacccc gagttccgcg aaggcggctg
     1621 agggcgggct cagggccgct tgatctcgac ctcgaggaag gcgaacgggc cgccggagcc
     1681 gttgatgacg ttgtgctcga cgccctcggg ccggaaatac ggcaccccgg acgtcatggg
     1741 cgcctcgcgc gtggtcccgc ccggctcatc gaggatgagc ttgccgtcgg cgaggggcac
     1801 gacgacgtag tcgtggccgt gccggtgcca gccggtctcg gcgccctcga cgaagctcca
     1861 cttcgtgacg acgacgcggt cgttgtcgat caggacctcg ggggtcgcag ccgggcgcgc
     1921 catcaaacta ctcctttggg gtccagggaa cgtagtcgcc cgtggcggcg gggcgggtgc
     1981 ccgaggacag gagcgagccg cgcgggcggt aggccgccgg cgtgccggtc atgtttggga
     2041 cgtgcggcat ttcccacggc cgggccgcat agctctcctc ggtgggcggg agggcatagg
     2101 tgtgggacag ccagccgcgc cagccgggcg ggactttcga gaactcggcc tcgccgttgt
     2161 acacgaccca gcgccgctcc gagccgacgg aggagtcgat gacgtggccc tgcgcccggt
     2221 agtagcggtt gccgaactcg tcctcgccga cgaactggcc gaagcgccag gtgtagaacc
     2281 gcgtgccgat ggtctggccg ttccaccagg tgaacacctg ggtgaagaag tctttgaagc
     2341 tcatgatctc gcgccttcag gccggggcgt gccgccttat cgccgccccg aacggtcgtg
     2401 tccacccgcg ggccaggcca ccgcgcagga gagcggctgc gcgcggccgc tgccatccag
     2461 cttgtgcagc cgttacgcac atgcgcgcaa ttgcacgcag ttccggaagc agtggttcgg
     2521 tttaaaattc ttcaatccgg ccggtaggtt aggatcgatc aaattgcgcg tatccgtttc
     2581 agcgcgctgg aaagcgcagc agtgatgctc actcccaacg actgggggac ggggcgtcat
     2641 gaacgcgaga attcggaacg gcttgcgcgc ggcgatc
//
LOCUS       DASQWN010000358         4658 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1452335, whole genome shotgun sequence.
ACCESSION   DASQWN010000358 DASQWN010000000
VERSION     DASQWN010000358.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 4658)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4658)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4658
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1452335"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(60..554)
                     /locus_tag="VE686_06795"
     CDS             complement(60..554)
                     /locus_tag="VE686_06795"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY84192.1"
                     /translation="MTTDSPAAESSGDASRWGFLARKRAPAAPPAIEAEEPEAGQDLS
                     QDLDADCVDALELAVEMAEAIRLAEARISALEAQNVEMRAQNAELRNYVTNEIPALRL
                     RAEAAAERAERAEAAMLAFEERERETVQRAQKAEQCLGRVREQLQTVRQTRFAAAQRR
                     PVAA"
     gene            complement(647..985)
                     /locus_tag="VE686_06800"
     CDS             complement(647..985)
                     /locus_tag="VE686_06800"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY84193.1"
                     /translation="MVDRSARTWPDLHESEGEWVETLELAVHAAERVRLTEQRNAQLE
                     ARVRDLEARLGAELAALQARIRTAEETIQRVEASRLAAEERARKSKERADEAEMFLAR
                     ISAAIRPLAR"
     gene            complement(1087..1791)
                     /locus_tag="VE686_06805"
     CDS             complement(1087..1791)
                     /locus_tag="VE686_06805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012386138.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HYY84194.1"
                     /translation="MKSQKVTASVPAPSPRRRYDDACGAAHALDLVGERWALLVMREL
                     MLGPKRFSDLRADLPGISANVLTQRLEGLEAAGVLVRRKLPPPASAQVYELTPWGYES
                     EPIFQTLGRWAARSPQHDPTLPLSAVSLFLSFRTMLDAERARGLVARIGFRIGAETFL
                     ARLARGRIEVERGPLENVDVVLAGAAPAIAAAVYGGQPLAALERAGMLAVDGDRALAE
                     RFVTLFPLPPKVETAG"
     gene            1853..2284
                     /locus_tag="VE686_06810"
     CDS             1853..2284
                     /locus_tag="VE686_06810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016846215.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HYY84195.1"
                     /translation="MTRMIFVNLPITDLRRAIAFYEAVGARKDERFCDDTAAMMVFSE
                     AINVMLLTHDKFRQFTVKQIADTRTTTEVLLCLSAESREAVDALVGNASAAGATIDPC
                     PQQDYGFMYGRSFEDPDGHIWEVVWMDVEAAMRGKEAFAAA"
     gene            2327..2680
                     /locus_tag="VE686_06815"
     CDS             2327..2680
                     /locus_tag="VE686_06815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006470534.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1428 domain-containing protein"
                     /protein_id="HYY84196.1"
                     /translation="MTYVDGFVVPVPAGNREAYREMAATAAAIFKEHGAIRLVECWGD
                     DVPDGKVTDFKRAVNAQAGETVVFSWIEWPSKAARDEGSKKVMSDPRLKMDGMPFDGK
                     RMIYGGFAVMLDTGE"
     gene            complement(2658..3296)
                     /locus_tag="VE686_06820"
     CDS             complement(2658..3296)
                     /locus_tag="VE686_06820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019996831.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-tyrosine-phosphatase"
                     /protein_id="HYY84197.1"
                     /translation="MPPIPVSLLTICGLSELDSHRTRGVTHVLSILDPEWPEPEPFRA
                     YDPHHRTTLNFHDVIEPGPGLILPRREHVERIVAFGEDLKDSAVEGRDPHLLVHCHMG
                     ISRSTAAMATLLIQAHPREDEDAIFARITEIRPQAWPNSRMIGFADELLGRGGRLTAA
                     LARLYARQLARRPETARDMRGLGRAREVDMAEAARRERDAARAIAVIPQCRA"
     gene            3434..4399
                     /locus_tag="VE686_06825"
     CDS             3434..4399
                     /locus_tag="VE686_06825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018647737.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tripartite tricarboxylate transporter
                     substrate-binding protein"
                     /protein_id="HYY84198.1"
                     /translation="MAPWFGGFGRMLLVAAALAGASSASAQMELKIMAPAAPGGGWDQ
                     TARSMQQALMESGAAKSVQVTNIPGAGGTIGIAQFVNGAKGDGNQLMVNGFVMVGAIL
                     LNKAPVTLEQVTPIARLTQETQVIVVPANSPHKTAKDLAEAVKKDIAKVTFAGGSAGG
                     VDHIMAALFAAAAGADASKINYVPFSGGGESLAAIMGGKVTAGISGYGEYEGQIKAGK
                     LRAIGVTSPERMAGVDVPTFKEQGIDLVLANWRSVVAPPGITDAQKKALVDTIEKMVK
                     SESWKTVLKQKGWDDAYLPGDEFAAFLKQEQTRVAAVLKSVGLVK"
     gene            4420..>4658
                     /locus_tag="VE686_06830"
     CDS             4420..>4658
                     /locus_tag="VE686_06830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002715828.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tripartite tricarboxylate transporter TctB
                     family protein"
                     /protein_id="HYY84199.1"
                     /translation="MQGTRARRPLDRAAVGVGVFLLALAGIAAWDASRLTLTSTYGMG
                     PEAMPYLIAGGLAVLAIGHFVVAVRSALPEREPFDL"
BASE COUNT          724 a         1595 c         1647 g          692 t
ORIGIN      
        1 tatctatcct gggacgctcg ccgcaggcgc taaggtccgg ctacggaacg gtcccgtcct
       61 caagctgcga cgggccggcg ctgggccgcc gcgaaccgcg tctgccgcac ggtctggagc
      121 tgctcccgca cccggccgag gcactgctcg gccttctgcg cccgctgcac cgtctcgcgc
      181 tcgcgctcct cgaaggccag catggcggct tcggcccgct cggcccgctc ggcggcggcc
      241 tcggcgcgca ggcgaagagc cgggatctcg ttggtgacgt agttgcgcag ttccgcgttc
      301 tgggcgcgca tctcgacgtt ctgcgcctcg agggccgaga tcctggcctc ggcgagcctg
      361 atcgcctccg ccatctcgac ggcgagctcg agggcgtcga cgcagtcggc gtcgagatcc
      421 tgcgacaagt cctgcccggc ctcgggctcc tccgcctcga tggcgggcgg tgcggccggc
      481 gcccgcttgc gggccaggaa tccccaccgc gacgcgtcgc ccgaactctc ggccgccggc
      541 gaatcggtcg tcatggcaag gttcctttgc gtcaggccat gatcgtcggc gaggtatggt
      601 taacgttgcg ttaaaggcgg tccggcgctt ccttgaggaa gctggttcac cgcgcgaggg
      661 gccggatggc cgcgctgatg cgggccagga acatctccgc ctcgtcggcg cgctccttgc
      721 tcttgcgggc gcgctcttcc gcggcgaggc ggctcgcctc gacccgctgg atggtctcct
      781 ccgccgtccg gatgcgggcc tggagggccg ccagctcggc gccgagccgc gcctcgaggt
      841 cgcgcacccg cgcctccagc tgggcgttgc gctgttccgt cagccgaacc cgctcggccg
      901 cgtggacggc aagctcgagc gtctcgaccc actcgccctc gctctcgtgg aggtcgggcc
      961 acgtccgcgc cgatcgatcg accacagtgc tctccgcgcg ccgcgcaacc gatccggtga
     1021 cgcaaaccta tggtgtgcag catagcggaa agctcaagcg aacgggagcg ccctgtcgac
     1081 cctgcgtcag ccggccgtct cgaccttcgg cggcagcgga aacagggtga cgaaacgctc
     1141 ggccagcgcg cgatcgccgt ccaccgccag catccctgcc cgctcgagcg ccgcgagagg
     1201 ctggccgcca tagaccgccg ccgcgatggc cggcgccgcc ccggcgagga ccacgtcgac
     1261 gttctcgagc ggcccccgct cgacctcgat ccggccgcgc gccagacgcg ccaggaaggt
     1321 ctcggcgccg atgcggaacc cgatgcgggc cacgaggccg cgggcgcgct ccgcatcgag
     1381 catggtgcgg aacgacagga agagcgagac ggcgctgagc ggcagggtcg gatcatgctg
     1441 cggcgagcgc gccgcccagc ggcccagggt ctggaagatg ggctcgctct cgtaccccca
     1501 cggggtgagc tcatacacct gcgccgaggc gggcggaggc agcttgcgcc ggacgaggac
     1561 gccggcggct tccaggcctt ccagtctctg cgtcagcacg ttggcgctga tcccggggag
     1621 gtcggcgcgc agatcgctga atcgtttcgg accgagcatc agctcgcgca tgacgagcag
     1681 cgcccagcgc tcgccgacga ggtcgagggc atgcgccgcg ccgcaagcat cgtcgtagcg
     1741 cctgcggggc gacggcgccg gaacagaggc agttactttt tgtgacttca cagttgcctt
     1801 tcataactct gcaggatatc ggaagcaagc acgcacgcag caggagaggc ccatgaccag
     1861 gatgatcttc gtcaatctgc ccatcaccga cctccggcgc gcgatcgcgt tctacgaggc
     1921 ggtcggagcc aggaaggacg agcgcttctg cgacgacacc gccgccatga tggtgttctc
     1981 ggaggccatc aacgtgatgc tgctgacgca cgacaagttc cggcagttca cagtcaagca
     2041 gatcgccgac acgcgcacga ccacggaggt gctgctctgc ctctccgccg agagccgcga
     2101 ggccgtcgat gccttggtcg gcaacgccag cgcggcgggc gcaaccatcg atccctgccc
     2161 gcagcaggac tacggcttca tgtacggccg cagcttcgag gatcccgacg ggcacatctg
     2221 ggaggtcgtg tggatggacg tcgaggcggc catgcgcggc aaagaggcct tcgcggcggc
     2281 ctgacgggat cgatggaccc cacctgcacc ccatggagag aagaccatga cctacgtcga
     2341 cggatttgtc gttcccgtgc cggccggcaa cagggaagcg tatcgcgaga tggccgccac
     2401 ggcggcggcg atcttcaagg agcacggcgc cattcggctc gtggaatgct ggggcgacga
     2461 cgtccctgac ggcaaggtca cggatttcaa gcgcgccgtg aacgcgcaag ccggcgagac
     2521 ggtcgtgttc tcctggatcg agtggccgtc caaggcggcg cgcgacgagg gctcgaagaa
     2581 ggtcatgagc gacccgcggc tcaagatgga cggcatgccc ttcgacggaa agcgcatgat
     2641 ctatggcggc ttcgccgtca tgctcgacac tggggaatga cggcgatcgc gcgtgcggcg
     2701 tcgcgctcgc gccgcgccgc ctcggccatg tcgacctcgc gggccctgcc gagcccgcgc
     2761 atgtcgcggg ccgtctcggg acggcgggcg agctggcgcg cgtagagcct ggcgagcgcc
     2821 gcggtgagcc tcccgccgcg gccgagcagc tcgtcggcga agccgatcat gcgcgagttc
     2881 ggccaggcct gcggacggat ctcggtgatc cgggcgaaga tggcgtcctc gtcctcgcgc
     2941 ggatgagcct ggatgagcag ggtggccatg gccgccgtgg agcgggaaat ccccatgtgg
     3001 cagtggacca ggaggtgggg gtccctgccc tcgacggcgc tgtccttcag gtcctccccg
     3061 aaagcgacga tgcgctcgac gtgctcgcgg cggggcagga tgagccccgg cccgggctcg
     3121 atgacgtcgt gaaagttcaa ggtcgtccgg tggtgcgggt cgtaggccct gaacggctcc
     3181 ggctcgggcc actcggggtc gaggatcgag aggacgtgcg tcaccccgcg cgtccggtgc
     3241 gagtcgagct cggacaagcc gcagatggtc aggagcgaga cggggatcgg aggcatcccg
     3301 ctcctctagc gggtttggtt ggcggcgcaa gcgcacgact tcgcgacgac agccattgcg
     3361 gcttgtcgcg cccctgacgg acggctaagc ctgagccgag aaggaccacc tcaagtattg
     3421 ggagggactc gcgatggcgc cctggtttgg cggatttggc cgcatgctcc tcgtggcggc
     3481 agccctggcc ggcgcaagtt ccgcctccgc ccagatggaa ctcaagatca tggctccggc
     3541 ggcgccgggc ggcggctggg accagaccgc gcgctccatg cagcaggccc tgatggagtc
     3601 gggcgccgcc aagagcgtcc aggtcacgaa cattccgggg gccggcggca ccatcggcat
     3661 cgcgcagttc gtgaacggcg cgaagggcga cggcaatcag ctgatggtca acggcttcgt
     3721 catggtcggc gccatcctgc tcaacaaggc gcccgtgacc ctcgagcagg ttaccccgat
     3781 cgcgcgcctc acgcaggaga cgcaggtcat cgtcgtgccg gcgaactcgc cccacaaaac
     3841 cgcgaaggac cttgccgagg cggtcaagaa ggacatcgcc aaggtgacgt tcgcgggcgg
     3901 ctccgccgga ggggtggacc acatcatggc ggccctgttc gccgcagccg cgggagccga
     3961 cgcctcgaag atcaactacg tgccgttctc gggcggcggc gagtcgcttg ctgccatcat
     4021 gggcggcaag gtcacggccg gcatctccgg ctacggcgag tacgagggcc agatcaaggc
     4081 cggcaagctg cgcgccatcg gggtgacctc gccggagcgc atggcgggcg tcgacgtccc
     4141 gaccttcaag gagcagggca tcgatctcgt cctggcgaat tggcgctccg tcgtggcgcc
     4201 gcccggtatc accgatgccc agaagaaggc tctcgtggac acgatcgaga agatggtgaa
     4261 gtcggagagc tggaagacgg tcctgaagca gaaaggctgg gacgacgcct acctccccgg
     4321 ggacgagttc gcggccttcc tgaaacagga gcagacgcgc gtcgccgcgg tcctgaagtc
     4381 cgtcggcctc gtgaagtagc ggcagcaggt ccgaccgcca tgcaggggac tcgcgcccgc
     4441 aggccgctcg accgggccgc ggtcggcgtc ggcgtgttcc tcctcgcgct tgccgggatc
     4501 gccgcctggg acgcgagccg gctgaccctc acctcgacct acggcatggg ccccgaagca
     4561 atgccgtacc tcatcgccgg cgggctcgcg gtgctcgcca tcggccactt cgtcgtcgcg
     4621 gtccgcagcg ccctaccgga gcgcgagccg ttcgatct
//
LOCUS       DASQWN010000359         3218 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_129701, whole genome shotgun sequence.
ACCESSION   DASQWN010000359 DASQWN010000000
VERSION     DASQWN010000359.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 3218)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3218)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3218
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_129701"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..803
                     /locus_tag="VE686_06835"
     CDS             <1..803
                     /locus_tag="VE686_06835"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HYY84200.1"
                     /translation="LTAMGLAIAASTLEIFADVPDGHPLFSRFSFFSAHDRGFYEDLV
                     ERQNDRRRGAEPGRDRERLIELALRYSESRHRLGLLDGAMQQRIIAARAAFAQMLPMS
                     LRPAIEFYDPQRLCAAASLQDNLLFGRIAHDQAGAEQAVYAVIRRVLTTRGLDGDVVR
                     IGLATPVDPAADEFSGPDAAAVDLARCLVRRPDVLVVERALLGLPRPSAVALLRRLRH
                     ALIGRGLIVVVPDLGPGIEPQTFEAIIRVERGTAALDRPQAVPEPAVA"
     gene            1078..2478
                     /gene="ahcY"
                     /locus_tag="VE686_06840"
     CDS             1078..2478
                     /gene="ahcY"
                     /locus_tag="VE686_06840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010685907.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004013 - adenosylhomocysteinase activity
                     [Evidence IEA];
                     GO_process: GO:0006730 - one-carbon metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenosylhomocysteinase"
                     /protein_id="HYY84201.1"
                     /translation="MKRDYVVRDIGLADFGRKEISIAETEMPGLMAVREEYGAKQPLK
                     GARIAGSLHMTIQTAVLIETLAALGADIRWVSCNIYSTQGHAAAAIAAAGIPVFAVKG
                     ETLTEYWDYTRKLFEWGDGGTPNMILDDGGDATLFVHLGVRAESGDVAFLEEPSSEEE
                     EILFALLKKTLKEKPKGWFGEIAKAVKGVSEETTTGVHRLYIMEKEGKLLFPAINVND
                     AVTKSKFDNLYGCRESLVDGIRRGTDVMMAGKVAMVAGFGDVGKGSAASLRQAGCRVL
                     VSEVDPICALQAAMEGYEVTTMEDAAPRADIFVTATGNKDVITLDHMRAMKDRAIVCN
                     IGHFDNEIQVAGLKNFKWTNVKPQVDEIEFPTGRRILLLSEGRLVNLGNAMGHPSFVM
                     SASFTNQTLAQIELYTNAGKYERKVYTLPKHLDEKVARLHLEKIGVKLTKLRPDQAAY
                     IGVSEQGPFKPDHYRY"
     gene            2764..>3218
                     /locus_tag="VE686_06845"
     CDS             2764..>3218
                     /locus_tag="VE686_06845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019906926.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component sensor histidine kinase"
                     /protein_id="HYY84202.1"
                     /translation="MAGTRLRRLEPFGRGYLALRHSRLASSAALVGTAVAASPAGAGV
                     GTDFLALAGRLEPQNAMSAAVLTGLVIFSTTTALLHLRERRKWNERERRLAGDVAALR
                     GAQDRAEMLVGSERQLVVTWGGRDGEPHCEGDPTVAGEGATVRRALAFGS"
BASE COUNT          511 a         1180 c         1039 g          488 t
ORIGIN      
        1 cgctcaccgc catgggcctc gccatcgcgg cgagcacgct cgagatcttc gccgacgtgc
       61 ccgacggcca cccgctgttt tcgcggttct cgttcttctc ggcgcacgat cgcggattct
      121 acgaggacct cgtcgagcgc cagaacgatc gccggcgcgg cgccgagccc ggccgcgacc
      181 gcgagcggct catcgagctc gccctgcgct acagcgagag ccgccaccga ctcggcctcc
      241 tcgacggggc catgcagcag cgcatcatcg cggcccgcgc ggccttcgcg cagatgctgc
      301 ccatgagcct gcggccggcg atcgagttct acgatcccca gcgcctgtgc gccgccgcga
      361 gcctgcagga caacctcctc ttcgggcgca tcgcccacga tcaggccgga gccgagcagg
      421 ccgtctacgc cgtgatccgg cgcgttctga ccacgcgggg cctcgacggc gacgtcgtcc
      481 gcatcggcct cgcgaccccg gtcgaccccg ccgccgacga gttctccggg cccgacgccg
      541 cggcggtcga cctcgcccgc tgcctcgtgc gccggccgga cgtgctcgtc gtcgagcggg
      601 cgctcctcgg gctgccgcgc cccagcgccg tcgcactcct gcgccgcctt cggcacgcgc
      661 tcatcggccg cggcctcatc gtcgtggtgc cggatctcgg cccgggcatc gagccgcaaa
      721 ccttcgaggc catcatccgc gtcgagcgcg gcaccgccgc cctcgaccgc ccccaagcgg
      781 tgccggagcc cgctgtcgcc tagagcgcga tccgctctga tcgacttacg agccaacttg
      841 ccgcgaagcg gcgcatgctc ctcacggcga tgaacaagat gcggtgctgc gcagctttgc
      901 ggcgctggat ctcgaagggc ctgccactcc gcttgcgctc cgttccaggc gctcaggaaa
      961 gcgctgcgcg aaccggagca cgacaggctc acataaagac atgtttatat cttgattgct
     1021 ctttgccgtg cggtctggta gaccctcggc cacactccag ccagcaggat ttgacggatg
     1081 aagcgcgact acgtggtgcg ggacatcggc cttgccgatt tcggccgcaa ggagatctcg
     1141 atcgccgaga ccgagatgcc gggcctcatg gcggtgcgcg aggaatacgg cgcgaagcag
     1201 cccctcaagg gcgcccgcat cgccggctcc ctgcacatga cgatccagac cgccgtgctg
     1261 atcgagaccc tggcggccct cggcgcggac atccgctggg tgtcgtgcaa catctactcg
     1321 acgcagggcc acgccgccgc cgccatcgct gcggccggca tccccgtctt cgccgtgaag
     1381 ggcgagacgc tgacggagta ctgggattac acccgcaagc tcttcgaatg gggcgacggc
     1441 ggcacgccca acatgatcct cgacgacggc ggtgacgcga ccctgttcgt gcacctcggc
     1501 gtgcgcgccg agagcggcga cgtcgccttc ctcgaggagc cctcgtcgga ggaagaggag
     1561 atcctcttcg cgctcctgaa gaagaccctg aaggagaagc cgaagggctg gttcggcgag
     1621 atcgcgaagg ccgtgaaggg cgtctccgag gagacgacga cgggcgtgca ccggctttac
     1681 atcatggaga aggaaggcaa gctcctgttc ccggcgatca acgtcaacga cgccgtgacc
     1741 aagtcgaaat tcgacaacct ctacggctgc cgcgagtccc tcgtcgacgg catccgccgc
     1801 ggcacggacg tcatgatggc cggcaaggtc gccatggtgg cgggcttcgg ggacgtcggc
     1861 aaaggctcgg ccgcgtccct gcgccaggcc ggctgccgcg tgctcgtttc cgaagtcgat
     1921 ccgatctgcg ccctgcaggc ggcgatggaa ggctacgagg tcacgaccat ggaagacgcg
     1981 gcgccccgcg ccgacatctt cgtgaccgcc acgggcaaca aggacgtcat cacgctcgac
     2041 cacatgcggg ccatgaagga ccgcgcgatc gtctgcaaca tcggccactt cgacaacgag
     2101 atccaggtcg cgggcctcaa gaacttcaag tggaccaacg tcaagccgca ggtcgacgag
     2161 atcgagttcc cgaccggccg ccgcatcctg ttgctgtcgg aaggccgcct cgtgaacctc
     2221 ggcaacgcca tgggccatcc gtccttcgtg atgtcggcgt cgttcaccaa ccaaacgttg
     2281 gcgcagatcg agctctacac caacgccggc aagtacgagc gcaaggtcta caccctcccg
     2341 aagcacctcg acgaaaaggt cgcgcggctc cacctcgaga agatcggcgt gaagctgacg
     2401 aagctgcgcc cggaccaggc cgcctacatc ggcgtctccg agcagggccc cttcaagccg
     2461 gaccactatc gctactgagc gagcttcatc ctcggcacag caaagcccgg cctcgcgccg
     2521 ggctttttcg tgttcgccgc ggccgctgtg tggcatccgc gccacatgtc cgcttaagcc
     2581 gtctttaacc ctctttgagc ctgactccgg cgcgggctac actgccgatt cagggcccgg
     2641 gggcggtcga gttctcccac ccgggccatc gttcagtgac agtgttccgg cgccgagtac
     2701 ggcgcctcga gtttcgcggc cctccggggc ccgaagcgat tcgtggggag cgacggcggg
     2761 ccaatggcgg ggacgaggct gcgccgactt gagccgttcg ggcggggtta tctcgccctc
     2821 cgccacagcc gtctcgcctc ctccgcagcc ctcgtcggaa cggccgttgc ggcaagcccg
     2881 gccggcgccg gggtcggcac cgacttcctc gcccttgcgg gccgcctcga gccgcagaac
     2941 gccatgagcg ccgccgtcct caccggcctc gtcatcttct cgacgaccac ggcgctcctg
     3001 catctgcgcg agcggcgcaa atggaacgag cgcgagcgcc gcctcgccgg cgacgtcgcc
     3061 gccctgcgcg gcgcccagga ccgggccgag atgctcgtcg gatcggaacg ccagctcgtg
     3121 gtgacctggg gcggccgcga cggcgagccc cactgcgagg gcgatcccac ggtcgccggc
     3181 gaaggcgcca ccgtgcgccg agccctcgcc ttcggctc
//
LOCUS       DASQWN010000360         2677 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_658055, whole genome shotgun sequence.
ACCESSION   DASQWN010000360 DASQWN010000000
VERSION     DASQWN010000360.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2677)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2677)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2677
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_658055"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            1..807
                     /locus_tag="VE686_06850"
                     /pseudo
     CDS             1..807
                     /locus_tag="VE686_06850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007563612.1"
                     /note="internal stop; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="carboxyl transferase domain-containing protein"
     gene            826..1158
                     /locus_tag="VE686_06855"
     CDS             826..1158
                     /locus_tag="VE686_06855"
                     /inference="COORDINATES: protein motif:HMM:NF024704.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YARHG domain-containing protein"
                     /protein_id="HYY84203.1"
                     /translation="MFIRLALTAAVAASLAAPAVAGCYEGQGCTDSARFSERFLVENA
                     ACDILWQIRNQIYHENGYCFRTPRGIRAFGNPGCRHDDISEVRLNQFERTNVATVAKV
                     ERIKGCPR"
     gene            complement(1165..1782)
                     /locus_tag="VE686_06860"
     CDS             complement(1165..1782)
                     /locus_tag="VE686_06860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006610213.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HYY84204.1"
                     /translation="MTPSFIHRFEAASAPGRPPLLLLHGTGGDETDLLPLGRMIAPGA
                     ALLSPRGKVLERGMPRFFRRLAEGVFDEADVRARALELADFVGEGLEAYGLEAPIAVG
                     FSNGANIAAALLWLRPETLAGAVLIRAMVPLSTPPEADLAAKPVLIISGAMDPIVPAD
                     NAARLAQRLTAAGASVTHEVLPAGHALSQADVTLAREWLTRISRS"
     gene            complement(1788..>2677)
                     /locus_tag="VE686_06865"
     CDS             complement(1788..>2677)
                     /locus_tag="VE686_06865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002713015.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ring-cleaving dioxygenase"
                     /protein_id="HYY84205.1"
                     /translation="ARRNLAFYTRTLGLRLVKKTVNFDDPGTYHLYFGDETGRPGTIL
                     TFFPWEHAAPGRAGVGSAQETAFRVPAAAIGFWAHRFVEQGVAHDAPERRFGETVLPF
                     KDPDGMSLALVGVPGAEAEAAFADGGIAPEHAIRGFAGVTLMLDDAVATGAILTDVLG
                     FTEAGREGSLVRYRAADGAMGGVVDVRVAAGFLPGRMGRGSVHHVAFRAADDEAQAAM
                     AAKLAERHGIAATEQKDRNYFRSIYFREPGAVLFEIATDAPGFAIDEPVAALGQALKL
                     PPFYEARRAEIERVLPPLE"
BASE COUNT          422 a          923 c          956 g          376 t
ORIGIN      
        1 gattttctgc ctgccaacaa cctggccggg gtgccggagt ggccgagtat ggacgatccg
       61 aaccgggtcg agccgtccct cgacaccctc gtgccggaaa atccgaacaa gccctacgat
      121 atgaaggagc tgatcctgaa ggtcgtcgac gagggcgacc tgttcgagat ccaggaggcc
      181 taagcccgca acatgatcac tggctttggc cggatcgagg gccgcaccgt cggcttcgtc
      241 gcccagcagc cgatggtcct tgccggcgtg ctcgactcgg acgcctcccg caaggccgcg
      301 cgcttcgtgc gcttctgcga cgcgttctcg atcccgatcg tcaccttcgt ggacgtgccg
      361 ggcttcctgc cgggcaccgc gcaggaatac ggcggcctga tcaagcacgg cgccaagctg
      421 ctcttcgcct actcccaggc caccgtgccg ctggtcacgg tgatcacgcg aaaagccttc
      481 ggcggcgcct acgacgtcat ggcctcgaag cacgtcggcg gcgacgtgaa ctacgcctgg
      541 ccgacggcgc agatcgccgt catgggggcc aaaggcgcgg tcgagatcat cttccgcgcg
      601 gacatcggcg acgccgacaa gatcgcggcc cgcaccaagg aatacgagga ccgcttcatg
      661 tcgcccttcg tggccgccga gcgcggctac atcgacgagg tgatcatgcc acactcgacg
      721 aggcgccgcg tcgcccgggc gctcgccatg ctccgcgaca aggaggtcga ggtgccctgg
      781 aagaagcacg acaacatccc gctttgaggg gcggcggagg agccgatgtt cattcgtctt
      841 gcactgaccg cggccgtcgc cgcgtcactc gccgcgcctg ccgtcgcggg gtgctacgag
      901 ggccagggct gcaccgacag cgcccgcttc tcggagcggt tcctggtcga gaacgccgcc
      961 tgcgacatcc tctggcagat ccgcaaccag atctaccacg agaacggcta ctgcttccgc
     1021 acgccccgcg gcatccgggc cttcggcaac cccggctgcc ggcacgacga cattagtgag
     1081 gtccggctca accagttcga gcggacgaac gtcgccaccg tcgcgaaggt cgagcgcatc
     1141 aagggctgcc cgcgctgacg ccaatcatga gcggctgatg cgggtcagcc actcccgtgc
     1201 gagcgtgacg tccgcctgcg aaagggcgtg gccggccggg agcacctcgt gcgtgacgct
     1261 ggcgcccgcg gccgtgagcc gttgcgcaag ccgggcggcg ttgtcggcgg gaacgatggg
     1321 gtccatcgcc cccgagatga tgagcaccgg cttcgccgcc aggtcggctt caggcggcgt
     1381 gctcaggggc accatggccc ggatgagcac ggcgccggcg agcgtctcgg gccgcagcca
     1441 cagcagcgcg gcggcgatgt tggcgccgtt cgagaacccg acggcaatcg gcgcctcgag
     1501 accgtaggcc tccagcccct cgccgacgaa gtcggcaagc tcgagggcgc gggcgcgcac
     1561 gtcggcctcg tcgaagacgc cctccgcgag ccggcggaag aagcgcggca tgccgcgctc
     1621 cagcactttt ccgcgcggcg acagcagggc ggcgcctggc gcaatcatgc gcccgagcgg
     1681 caggaggtcg gtttcgtcgc cgcccgtgcc gtgcaggagg aggagcggcg gacgcccggg
     1741 agcgctcgcc gcctcgaagc ggtggatgaa ggacggggtc ataggcgtta ctcgaggggc
     1801 gggaggacgc gctcgatctc ggcgcggcgc gcctcgtaga agggcggcag cttgagcgcc
     1861 tgcccgagcg ccgcgacggg ctcgtcgatg gcaaatcccg gcgcgtcggt ggcgatctcg
     1921 aacagcacgg caccgggctc ccggaagtag atcgagcgga agtagttgcg gtccttctgc
     1981 tcggtggctg cgatgccgtg gcgctcggcg agcttcgccg ccatggcggc ctgcgcctcg
     2041 tcgtcggcgg cccggaacgc aacgtgatgc accgagcccc ggcccatgcg cccgggcagg
     2101 aacccggccg cgacacggac gtcgacgacg cctcccatcg ccccgtcggc ggcgcggtag
     2161 cgcacgaggg acccctcgcg gccggcctcc gtgaagccga gcacgtcggt gaggatcgcg
     2221 cccgtggcga cagcgtcgtc gagcatgagc gtgacgccgg caaagcctcg gatggcgtgc
     2281 tcgggtgcga tgccgccgtc cgcgaaggcc gcctcggcct cggcgcccgg aacgccgacg
     2341 agggcgaggc tcatgccgtc aggatccttg aacggcagca cggtctcgcc gaagcgcctc
     2401 tcgggcgcgt cgtgcgcgac gccttgctcg acgaagcgat gggcccagaa cccgatcgca
     2461 gcggccggaa cccggaacgc agtttcttgc gcgctgccga cgccggcgcg gccgggcgcg
     2521 gcatgctccc aggggaagaa cgtcaggatg gtgccgggcc ggccggtctc gtccccgaag
     2581 tacaggtgat aggtgccggg gtcatcgaag ttgacggtct tcttgacgag tctgaggccg
     2641 agggtgcgcg tgtagaacgc gaggttccgg cgcgcgg
//
LOCUS       DASQWN010000361         4131 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1353459, whole genome shotgun sequence.
ACCESSION   DASQWN010000361 DASQWN010000000
VERSION     DASQWN010000361.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 4131)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4131)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4131
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1353459"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..607)
                     /locus_tag="VE686_06870"
     CDS             complement(<1..607)
                     /locus_tag="VE686_06870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003604387.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LptF/LptG family permease"
                     /protein_id="HYY84206.1"
                     /translation="MMIGATLGRYLSARFARTIAAVFLTVFALVYTLDFVELMRRAGD
                     AEGATPAVMARLALFRTPTVAEQVLPFAVLFGSMAALLQLSRKLELVVARAAGISVWQ
                     FLQPGVLVAATIGIVAVTAYNPVSAALKQRASEIEAGMFARGNKSSSGKDVWLRQKSV
                     EGDAIIRAEAAVENTATLAGVTMFTFDETGTFRERVEAAEAV"
     gene            complement(615..1787)
                     /gene="lptF"
                     /locus_tag="VE686_06875"
     CDS             complement(615..1787)
                     /gene="lptF"
                     /locus_tag="VE686_06875"
                     /EC_number="7.5.2.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003604386.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0015221 - lipopolysaccharide transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0015920 - lipopolysaccharide transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LPS export ABC transporter permease LptF"
                     /protein_id="HYY84207.1"
                     /translation="MTLVERYILRIAFGAFAATLVGLTAVIWITQALRELDLLTSKGQ
                     TVIMFFIVTGLSLPTLVTVISPVALFIAVIYTLNRLNGDSELIVMSAAGVAPVRLLRP
                     FLTLAGFVCLLVSVMTLYILPTSFQELRELLQKIRGDFIANVVKEGQFTSLDNGITFH
                     FRERSGSGVLLGIFMQDRRERDRPTVYLAERGQTFDLKGQSYLVLEQGSVHRQQPKSR
                     DSSIIAFERYAIDLAAFNQEGGDTIYKPRERGTTQLLFPKEDDAYYRMQAGRFRAELH
                     ERFSGWLYPLAMMLIAFAALGDARTTRQGRGLAVLTAVVAVVALRIAGFAASSAAVRS
                     PMGVVWIYAVPLAAIVIAGAIALEGPRARTYGTRAARAVAGTIQRLIPAQLRLRGA"
     gene            1982..3472
                     /locus_tag="VE686_06880"
     CDS             1982..3472
                     /locus_tag="VE686_06880"
                     /EC_number="3.4.11.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018261030.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030145 - manganese ion binding [Evidence
                     IEA];
                     GO_function: GO:0070006 - metalloaminopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="leucyl aminopeptidase"
                     /protein_id="HYY84208.1"
                     /translation="MADSVKIDVQGFGPAKGGDLVVFVGDDLKLADTAASRVGSAGDL
                     IGRLAPLERFKGKAQSALSIPMPQGLPVERLIVVGIGGEKDRKDLDWAALGGAVGARV
                     AGRQATVLLDIPGVPPSVDGVADAVLGARLRAYRFERYKTKAKDGENEEGATRLTFMV
                     PDPAAARRAVKARDAVAAGVVIARDLVNEPPNVLSPEEFARRAQALAKVGVEVEVLDE
                     KALSKLGMRALLAVGQGSARDSRVVVMRWNGGKDRAAPAAFVGKGVVFDSGGISIKPG
                     GGMEDMKGDMAGAACVVGLMHALAARKAKVNAIGIIGLVENMPDGAAQRPGDIVTSMS
                     GQTIEIINTDAEGRLVLADLLWHVQERYKPKFMIDLATLTGAIMVALGQEHAGLFSND
                     DELAQRLSAAGEATGEKVWRMPLGPAYDKLIDSKFADMKNTGGRHGGSITAAQFLQRF
                     VNETPWAHLDIAGTAMGSPQNEINKSWASGWGVRLLDRLVQDHYER"
     gene            3510..>4131
                     /locus_tag="VE686_06885"
     CDS             3510..>4131
                     /locus_tag="VE686_06885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009469400.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="crotonase/enoyl-CoA hydratase family protein"
                     /protein_id="HYY84209.1"
                     /translation="MAVTVEKSGPVTTVIHSRPEARNAVNPESADALVEAFLAFDRDP
                     DASVAVFWGAGGAFCAGWDLKYASQLVGADRPLAALDFPDDGSGVPRGPMGPSRLELS
                     KPVIAAVAGPAVAGGFELALWCDLRVLEEDAYFGVYCRRWGIPLIDGGTVRLPRLVGE
                     GRALDIIMTGRKVDAKEAYRIGLANRIAPKHRSREVAEELAHEIARF"
BASE COUNT          670 a         1382 c         1495 g          584 t
ORIGIN      
        1 gaacggcttc cgccgcttcc acgcgctcgc ggaaggtgcc ggtttcgtcg aacgtgaaca
       61 tggtgacgcc ggcgagggtc gcggtattct cgacggcggc ttccgcccgg atgatggcgt
      121 cgccctcgac gctcttctgc cgcagccaga catccttgcc ggacgacgac ttgttgcccc
      181 gggcgaacat cccggcctcg atctcggagg cacgctgctt cagcgcagcc gacacgggat
      241 tgtaggccgt caccgcgacg atgccgatgg tcgccgccac gagcacgccg ggctgcagga
      301 actgccacac cgagatgccg gccgcgcggg cgaccaccag ctcgagcttg cggctgagct
      361 gcaggagcgc ggccatgctg ccgaacagca cggcaaaggg gagcacctgc tcggcgacgg
      421 tcggcgtgcg aaacagcgcc agccgcgcca tgacggcggg cgtcgcgcct tcggcgtcgc
      481 cggcccggcg catgagctcg acgaaatcga gcgtgtagac gagggcgaac acggtcagga
      541 acaccgccgc gatcgtccgg gcgaagcggg ccgagaggta gcgcccgagg gttgcgccga
      601 tcatcatggc cgcctcacgc tccccgcagg cggagctggg cggggatcag gcgctgaatc
      661 gtgcccgcga cggcccgtgc cgcgcgcgtt ccgtacgtcc gcgcgcgcgg accttcgagt
      721 gcgatggcgc cagcgatcac gatggccgca agaggcaccg cgtagatcca cacgaccccc
      781 atcggcgagc gcaccgcggc gctcgaggcc gcaaagcccg cgatgcgtaa cgccacgaca
      841 gccaccacgg cggtgaggac ggcaagcccg cggccctggc gggtggttcg cgcgtcgccg
      901 agcgccgcga aggcgatcag catcatcgca agagggtaga gccagcccga gaagcgttcg
      961 tgcagctcgg cccggaagcg gcctgcctgc atcctgtagt aggcgtcgtc ctcttttggg
     1021 aacagcagtt gtgtcgtccc gcgctcgcgc ggcttgtaga tcgtgtcgcc gccctcctgg
     1081 ttgaacgcgg cgagatcgat tgcgtagcgc tcgaaagcga tgatcgaaga atcgcggctc
     1141 ttcggctgct gccggtgcac ggagccctgc tcgaggacga ggtagctttg gcctttcagg
     1201 tcgaaggtct gcccgcgctc ggccaggtag acggtcgggc ggtcgcgctc gcggcgatcc
     1261 tgcatgaaga tgccgaggag cacgccgctg cccgagcgct cgcgaaaatg gaaggtgatg
     1321 ccattgtcga gcgacgtgaa ctgcccctcc ttcacgacgt tggcgatgaa gtcgccccgg
     1381 atcttctgca agagctcccg gagttcctgg aagctcgtcg gaaggatgta gagggtcatc
     1441 accgacacga ggaggcagac gaagccggcg agcgtcagga acggccggag gagacgcaca
     1501 ggagcgaccc cggccgcgct catgacgatg agctcggaat cgccgttgag acggttgagc
     1561 gtgtagatca ccgcgatgaa cagggcgacg ggcgagatca cggtgacgag cgtcggcagg
     1621 gacagcccgg tcacgatgaa gaacatgatc accgtctgcc ccttgctggt gagcagatcg
     1681 agctcgcgca gggcctgggt gatccagatc accgccgtca ggccgaccag cgtcgccgcg
     1741 aaggcgccga aggcgatcct gagtatgtaa cgctcgacca gtgtcatgcc tgcctgcggc
     1801 cgttgacttg cagtgatatc gggcccggcc ggggcaagcc gacgcgcgcc tccctccttc
     1861 gccgtgagag tgaggcactt tcacggcgaa gccgttgtag cgcggcgaaa catggttgta
     1921 tgtcactcgc cggcatcacc ggccggaacc cggcgccggg cgccagcagc aagggacggg
     1981 catggccgac agcgtgaaga tcgacgttca gggcttcggg ccggcaaaag gcggcgatct
     2041 cgtcgtcttc gtcggcgacg atctcaagct tgcggacact gcggcctccc gggtcgggag
     2101 cgccggcgac ctcatcgggc gcctggcgcc cctcgagcgc ttcaagggca aggcgcagtc
     2161 cgcgctgtcg atcccgatgc cgcagggtct cccggtcgag cggctgatcg tcgtggggat
     2221 cgggggcgag aaggaccgga aagacctcga ctgggcggcc ctcggcggcg ccgtcggggc
     2281 ccgggtcgcg ggacggcagg cgacagtcct tctcgacatc ccgggcgtac cgccctcggt
     2341 cgacggcgtc gccgacgcgg tcctcggcgc gcggctccgg gcctacaggt tcgagcgcta
     2401 caagaccaag gcgaaggacg gggagaacga agagggcgcg acgcgcctca ccttcatggt
     2461 gcccgatccg gcggcggcgc gacgggccgt gaaggcgcgc gacgcggtcg ctgccggggt
     2521 ggtgatcgcg cgagacctcg tcaacgagcc cccgaacgtc ctctcgccgg aggagttcgc
     2581 ccgtcgagcg caggcgctcg ccaaggtcgg cgtagaggtc gaggtgctgg acgagaaggc
     2641 cctctcgaag ctcggcatgc gggcgctgct cgcggtgggc cagggctcgg cccgcgacag
     2701 ccgggtcgtc gtgatgcgct ggaacggcgg caaggaccgc gccgccccgg ccgccttcgt
     2761 cggcaagggc gtggtcttcg attcgggcgg tatctccatc aagccgggcg gcgggatgga
     2821 ggacatgaag ggcgacatgg cgggggcggc ctgcgtcgtc ggcctcatgc acgcgctcgc
     2881 tgcgcgcaag gccaaggtca acgccatcgg gatcatcggg ctcgtcgaga acatgcccga
     2941 cggggccgcg cagcgccctg gcgacatcgt gacgtccatg tcggggcaga ccatcgagat
     3001 catcaacacc gacgcggagg gccggctcgt gctcgccgat ctcctctggc acgtgcagga
     3061 gcgctacaag ccgaagttca tgatcgacct cgcgacgctc accggcgcca tcatggtcgc
     3121 gctcggccag gagcacgccg gcctcttctc gaacgacgac gagctcgcgc agcggctgtc
     3181 ggccgcgggc gaggccacgg gcgagaaggt ctggcgcatg ccgctcggcc cggcctacga
     3241 caagctcatc gactcgaagt tcgccgacat gaagaacaca ggcggacgcc acgggggctc
     3301 gatcacggcg gcgcagttcc tccagcgctt cgtcaacgag acgccctggg cgcacctcga
     3361 catcgccggt acggccatgg gctcgcccca gaacgagatc aacaagagct gggcgtcggg
     3421 ctggggcgtg cgcctcctcg atcggctggt gcaggatcac tacgagaggt gacgctcccc
     3481 cggttgtgag ggaggcgcgg gaggcaggga tggccgtcac agtcgagaag agcggacccg
     3541 tgacgacggt catccactcg cggcccgagg cgcgaaacgc ggtgaacccc gagagcgcgg
     3601 acgcgctcgt cgaggcgttc ctggccttcg accgcgaccc ggacgcctcg gtcgcggtgt
     3661 tctggggcgc tggcggcgcc ttctgcgccg ggtgggacct caagtacgcc tcacagctcg
     3721 tcggcgcgga ccggccgctt gcggcgctcg acttccccga tgacgggagc ggggtcccgc
     3781 gcggccccat gggcccgtcc cgcctcgagc tgtcgaagcc cgtgatcgcg gccgtggccg
     3841 gccctgccgt cgcgggcggc ttcgagctcg cgctgtggtg cgacctgcgc gtcctcgagg
     3901 aggacgccta cttcggcgtc tattgccggc gctggggcat ccccctcatc gacggcggca
     3961 cggtgcgcct gccccggctc gtcggcgagg gcagggcgct cgatatcatc atgaccgggc
     4021 gcaaggtcga cgccaaggag gcctaccgca tcgggctcgc gaaccgcatc gccccgaagc
     4081 accgctcacg cgaggtggcg gaggagcttg cgcacgagat cgcgcggttc c
//
LOCUS       DASQWN010000362         2388 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_824413, whole genome shotgun sequence.
ACCESSION   DASQWN010000362 DASQWN010000000
VERSION     DASQWN010000362.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2388)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2388)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2388
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_824413"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1171)
                     /locus_tag="VE686_06890"
     CDS             complement(<1..1171)
                     /locus_tag="VE686_06890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019195773.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015116 - sulfate transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0008272 - sulfate transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SulP family inorganic anion transporter"
                     /protein_id="HYY84210.1"
                     /translation="MIPSARLTLPRPSFSELFTPKLVTALREGYSPTKLRADAVAGLT
                     VAIVALPLSMAIAIASGAPPERGLYTAVVGGFLISALGGSRFQIGGPAGAFIVLVAAT
                     IGRHGYDGFLLATMIAGFLLMALGFLRLGVYIKYIPHPVTVGFTAGIALIIFASQLKE
                     LFGLSLPGAEPGALVPKLQALWQAHGTANPSAVAVAGLTVALIVGLRRVRPTWPGFLI
                     AVVAAAGATAAFALPVETIGTRFGGVPNTLPSPQLPEITLARIGAVLPDAFSLALLGG
                     IESLLSAVVADAMTGRRHRSNCELVAQGVANVGSALFGGLCATGTIARTATNVRAGAS
                     GPVAGILHALFLLLFMLFAAPLASYIPLAALAGVLALVAWNMAERHEFVALLSRSR"
     gene            1282..2253
                     /locus_tag="VE686_06895"
     CDS             1282..2253
                     /locus_tag="VE686_06895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012333034.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quinone oxidoreductase"
                     /protein_id="HYY84211.1"
                     /translation="MTKAIRIHEFGGPEVLKYEDVDIGAPGPGQVRVRHNVIGVNFID
                     IYYRSGMYPAELPFTPGNEGAGVVAAVGEGVTAFKPGDRVAYAATLGSYAEERLIDAK
                     FLVKLNDRVEDETAAAMMLKGLTAQYLLRRTYKVKPGDTILFHAAAGGVGLIACQWAK
                     HLGCTVIGTVGTADKAELAKQNGCDHVILYREENFAERVKEITRGALCDVVYDGVGKA
                     TFPASLDCLKPFGMFASFGSASGPIDAFNIGILAQKGSLYATRPTLFTHVAERPTLEA
                     MAEDLFGVVRSGGVKIPVHSRAKLAEAAEVHRRLAGRETTGATVMYP"
BASE COUNT          410 a          813 c          865 g          300 t
ORIGIN      
        1 cgcgcgaccg gctcagcaag gcgacgaact catgccgctc cgccatattc caggcgacca
       61 gggcaagcac gcccgccagc gccgcaagcg ggatgtagga cgcgagcggg gcggcgaaga
      121 gcatgaacag caacaggaac agcgcgtgca ggatgccggc gacaggtccc gaggcgccgg
      181 cgcgcacgtt cgtcgccgtg cgggcgatgg tgcccgtcgc gcacaggcca ccgaagagcg
      241 ccgagccgac gttggcgacg ccctgcgcca cgagctcgca gttggagcgg tgccgacgcc
      301 ccgtcatggc gtcggcgacg acggcggaga gaagggactc gatcccgccg aggagcgcca
      361 gcgagaacgc gtccggcagc acggcgccga tgcgcgcgag cgtgatctcg gggagctgcg
      421 gcgacggcag cgtgttcggc acgccgccga agcgcgtgcc gatggtctcg acgggcaggg
      481 cgaaagccgc cgttgctccc gccgccgcca cgacggcgat caggaagccc ggccacgtgg
      541 gccgcacccg acgcaggccg acgatgagcg cgaccgtcag gccggcgacg gcgacggcgg
      601 acgggtttgc cgtcccgtgc gcctgccaca aggcctggag cttcgggacg agggcgccgg
      661 gctccgctcc cggcaggctc agcccgaaca gctccttgag ctggctcgcg aagatgatga
      721 gcgcgatccc ggccgtgaag ccgaccgtca cggggtgcgg gatgtacttg atgtagaccc
      781 cgagccggag gaacccgagc gccatgagca ggaagccggc gatcatggtg gcgagcagga
      841 agccgtcgta gccgtgccgc ccgatggtcg cggcgacgag cacgatgaag gctcccgcag
      901 ggccgccgat ctgaaagcgc gagccgccaa gcgccgagat caggaaaccg ccgaccaccg
      961 ccgtgtacag gccgcgctcg ggcggggcgc cggaggcgat ggcgatcgcc atggacagcg
     1021 gcagcgccac gatcgcgacc gtcaatccgg cgacggcgtc ggcgcggagt ttggtgggcg
     1081 agtagccctc gcgcagggcg gtcacgagct tcggcgtgaa cagctcggag aagctcggcc
     1141 tcggaagcgt gagtcgcgca gaggggatca tgccgagccg attgctaagc cagcgcgcgc
     1201 cccagggaaa gcgcacagga cgcggtttcg gttgcggagc cctcgccgcc tcctatgatc
     1261 cgcccgaaag aggatacagc catgaccaaa gcgatacgca tccatgagtt cggcggaccc
     1321 gaggtcctga agtacgagga cgtcgacatc ggcgcacccg gccccggcca ggtgcgggtg
     1381 cgccacaacg tcatcggcgt gaacttcatc gacatctact accgcagcgg catgtacccg
     1441 gcggagctgc cgttcacgcc cggcaacgag ggcgcgggcg tcgtggccgc ggtcggggag
     1501 ggcgtcaccg cgttcaagcc gggcgaccgc gtcgcctatg cggcgacgct cggatcctat
     1561 gccgaggagc gtctcatcga cgcgaagttc ctggtcaagc tcaacgatcg ggtcgaggac
     1621 gaaaccgcgg cggccatgat gctgaaaggg ctcacggcgc agtacctcct gcgccggacc
     1681 tacaaggtga aaccgggtga cacgatcctc ttccatgccg ccgcgggcgg cgtcgggctg
     1741 atcgcctgcc agtgggcgaa gcacctcggc tgcacggtga tcggcacggt gggcacggcc
     1801 gacaaggccg agctcgccaa gcagaacggc tgcgaccacg tcatcctcta ccgcgaggag
     1861 aatttcgccg agcgggtcaa ggaaatcacc aggggcgcgt tgtgcgacgt cgtctacgat
     1921 ggcgtcggca aggcgacgtt cccggcctcg ctcgactgcc tcaagccctt cggcatgttc
     1981 gcgagcttcg gctcggcctc ggggccgatc gatgccttca acatcggcat cctcgcccag
     2041 aagggctcgc tctacgccac gcgcccgacc ctgttcacgc acgtcgccga gcgcccgacc
     2101 ctggaggcga tggccgagga tctgttcggc gtcgtgcgga gcgggggggt gaagatcccg
     2161 gtccattccc gcgccaagct cgcggaggcc gcggaggtcc accgccgcct cgccggccgc
     2221 gagacgaccg gcgcgacggt gatgtatccg tagcggcccg gcgcgtgaca cgcgctgcgc
     2281 ttcgggcgta gcctcgggtc gcgggcgaca ggcccgcttc acgaggggtc cgccatgcct
     2341 cgtcccgatg gtgcgccgag ccggcgcgag acgcttcagc tcatctcc
//
LOCUS       DASQWN010000363         3860 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_758586, whole genome shotgun sequence.
ACCESSION   DASQWN010000363 DASQWN010000000
VERSION     DASQWN010000363.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 3860)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3860)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3860
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_758586"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2825)
                     /locus_tag="VE686_06900"
     CDS             complement(<1..2825)
                     /locus_tag="VE686_06900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012252186.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin-dependent oxidoreductase"
                     /protein_id="HYY84212.1"
                     /translation="MLTKRKSGDASRSKLQAVAAGLASGVIDRRTFLRQSGLTVGGLA
                     AIGSIQLGSVRKAQAAGSMADKPEIRKNICTHCSVGCTVTAEVVNGVWVGQEPSWDSP
                     INRGTHCAKGAGVRELVGGARRLKYPMKLVGGQWQRISWDQAINEIGDKMTEIRKKSG
                     ADALYWLGSAKFTNEAAYLFRKFGAFWGTNNVDHQARICHSTTVAGVANTWGYGAQTN
                     SYNDIRNAKTMVFIGSNAAEAHPVAVQHLLASKEINRGNMIVMDPRFTRTAAHATEYV
                     RFRSGTDIPLVWGMLWHIFQNGWEDKDFIAKRVYGLDEVRKEVAKWTPEEVERVTGVP
                     GEQLKRVAQKFATEKPATIIWCMGATQHTVGTANVRAFCVACLVTGNVGAPGTGANIF
                     RGHTNVQGATDLGLDISSLPLYYGLTEAAWKHWGRVWETEYEWLQAQFDEVPAISGRK
                     PRSRKENMEAPGITSTRWFDAVNLPEAEVDQRTGIKGLVVFGHGGNTVVRIPEAVKGV
                     EKLELLVVADPHPTSFASMSDRKDNTYLLPICTSFEMDGSRTASNRSLQWGETIVKPI
                     FESKTDYEAMYLLAKKLGMAERMFKNIKVENNVPDAEDLLREINRGGWSTGYCWQSPE
                     RLKAHMKNQAKFDIVSLRAPKDVPEIGGDYYGLPWPCWGKPEIRHPGSAILYNTNLHV
                     KDGGSTFRARFGVERNGETLLAENSFTQGSELTDGYPEFTMGVLKKLGWDKDLRPEEL
                     AVIERIGGNNVNAVSWATDLSGGIQRVCLDHGVMHYGNGKARALAWNLPDPVPVHREP
                     IYSPRPDLVAKYPTRPDERQFRLPNIGMSIQKAAVDKNIAKDFPIVLSSGRLVEYEGG
                     GEETRSNRWLAELQQDMFVEINTGDAADRGIKDGQFVWVLGAENAAKAKVKALVTDRV
                     GRGVAWMPFHFAGWYQGEDRRSKYPQGT"
     gene            complement(2836..3051)
                     /locus_tag="VE686_06905"
     CDS             complement(2836..3051)
                     /locus_tag="VE686_06905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018260493.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="twin-arginine translocation signal
                     domain-containing protein"
                     /protein_id="HYY84213.1"
                     /translation="MTTEKPRTALNRRNFLGAVGGATTIAAAASPLASTEAQAYDPGK
                     DETKARYRETDHVKAFYRTNGYETLKK"
     gene            complement(3101..3691)
                     /locus_tag="VE686_06910"
     CDS             complement(3101..3691)
                     /locus_tag="VE686_06910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009735496.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone TorD family protein"
                     /protein_id="HYY84214.1"
                     /translation="MTSVLAADDVDALRAQEYALLALLLSRAPTAEILGRLADLKGDA
                     SPLGLAHIALADAARTADPDAVSREYFDLFVGVGQGELLPYGSYYLTGFLHGRPLARL
                     RQDLGALGIEADETLREPEDHIAILCEVMAGLAGRRFEAQAGGEKRFFERHLEPWGAR
                     FFADVETAQLARFYRAVGTVGRVFMAVEAEAFAMDE"
BASE COUNT          552 a         1308 c         1309 g          691 t
ORIGIN      
        1 gttccctgcg ggtacttcga ccggcgatcc tcgccctggt accagccggc gaagtggaac
       61 ggcatccagg cgacgccgcg cccgacgcgg tctgtgacga gcgccttgac cttcgccttg
      121 gccgcattct cggcccccag cacccagacg aactggccgt ccttgatgcc gcggtccgcc
      181 gcgtcgccgg tgttgatctc gacgaacatg tcctgctgca attcggcgag ccaccggttc
      241 gagcgggtct cttcgccgcc gccctcgtac tccacgagcc ggcccgagga gaggacgatc
      301 gggaagtcct tggcgatgtt cttgtcgacg gccgctttct ggatcgacat gccgatgttg
      361 ggcagccgga actgccgctc gtctggacgc gtcgggtact tcgccacgag atcgggccgc
      421 ggcgagtaga tcggttcgcg gtgcaccggg acggggtcgg gcaggttcca ggcgagcgcc
      481 ctcgccttgc cgttgccgta gtgcatgacg ccatgatcga ggcagacgcg ctgaatgccg
      541 cccgacaggt cggtcgccca tgagacggcg ttgacgttgt tgcccccgat ccgctcgatg
      601 acggcgagtt cctcgggccg caggtccttg tcccagccga gcttcttcag cacgcccatc
      661 gtgaactcgg ggtagccgtc cgtcagctcc gagccttgcg tgaaggagtt ctcggcgagc
      721 agcgtctcgc cgttgcgctc gacgccgaag cgggcccgga acgtggagcc gccgtccttc
      781 acgtgcaggt tggtgttgta gaggatcgcc gagccggggt gccggatctc cggcttgccc
      841 cagcacggcc acggcaggcc gtagtagtcg ccgccgatct cgggaacgtc cttcggcgcg
      901 cgcagggaga cgatgtcgaa cttcgcctgg ttcttcatgt gcgccttgag gcgctccggc
      961 gactgccagc agtagcccgt cgaccagccg ccgcgattga tctcgcgcag gaggtcttcc
     1021 gcatccggca cgttgttctc gaccttgatg ttcttgaaca tccgctcggc catgccgagc
     1081 ttcttggcga gcaggtacat cgcttcgtag tcggtcttcg attcgaagat cggcttaacg
     1141 atggtctcgc cccactgcag cgagcggttc gaggcggtgc gcgagccgtc catctcgaaa
     1201 gacgtgcaga tcggcaggag gtaggtgttg tccttgcggt ccgacatcga cgcgaacgag
     1261 gtcgggtgcg ggtcggcgac gacgaggagt tcgagcttct cgaccccctt cacggcctcg
     1321 gggatgcgca cgacggtgtt gccgccgtgg ccgaagacca ccaggccctt gatgccggtc
     1381 cgctgatcga cctccgcctc gggcaggttg acggcgtcga accacctcgt cgaggtgatg
     1441 cccggcgctt ccatgttctc cttgcgcgag cgcggcttgc gccccgagat ggcgggcacc
     1501 tcgtcgaact gcgcctggag ccactcgtac tcggtctccc agacgcggcc ccagtgcttc
     1561 caggctgctt cggtcaggcc gtagtagagg ggcagcgacg agatatcgag gccgaggtcc
     1621 gtcgcgccct gcacgttggt gtggccgcgg aagatgttgg cccccgtgcc gggcgcgccg
     1681 acgttgccgg tgacgaggca ggcgacgcag aaggcgcgca cgttggcggt gccgaccgtg
     1741 tgctgggtcg cgcccatgca ccagatgatc gtcgccggct tctcggtcgc gaacttctgg
     1801 gcgacgcgct tgagctgctc gcccggcacg ccggtgacgc gctcgacctc ctcgggggtc
     1861 cacttggcca cttccttgcg cacctcgtcg aggccataga cgcgcttggc aatgaagtcc
     1921 ttgtcctccc agccgttctg gaagatgtgc cagagcatgc cccacacgag cgggatgtcc
     1981 gtgcccgagc ggaagcggac gtactcggtc gcgtgcgccg cggtccgcgt gaagcgcggg
     2041 tccatgacga tcatgttgcc gcggttgatc tccttcgagg caaggagatg ctgcacggcg
     2101 accgggtgcg cctcggcggc gttcgacccg atgaacacca tggtcttggc gttgcggatg
     2161 tcgttgtacg aattggtctg ggcgccgtag ccccaggtgt tggcgacgcc ggcgaccgtc
     2221 gtcgagtggc agatgcgggc ctggtggtcg acgttgttgg tgccccagaa ggcgccgaac
     2281 ttgcggaaca ggtaggcggc ctcgttggtg aacttcgccg atccgagcca gtagagcgcg
     2341 tccgcgcccg acttcttgcg gatctccgtc atcttgtcgc cgatctcgtt gatcgcctga
     2401 tcccacgaga tgcgctgcca ctgcccgccg acgagcttca tcgggtattt gaggcgccgc
     2461 gcgccgccga cgagctcgcg cactccggcg cccttggcgc agtgcgtgcc gcggttgatc
     2521 gggctgtccc aggacggctc ctgcccgacc cacacaccgt tcacgacttc agccgtcacc
     2581 gtgcagccga cggagcagtg cgtgcagatg ttcttcctga tctccggctt gtcggccatg
     2641 cttccggcag cctgggcctt gcgcaccgat ccgagctgga tcgatccgat ggccgcgaga
     2701 ccgccgacgg tcaggccgga ctgccgcagg aacgtgcgtc ggtcgatcac gcccgaggcg
     2761 agacccgccg cgacggcctg cagcttgctg cggctcgcgt cgccgctctt gcgcttggtc
     2821 agcatggcgc agccctcact tcttgagcgt ctcgtagccg ttggtgcggt agaaggcctt
     2881 gacgtgatcg gtctcccgat agcgcgcctt cgtctcatcc ttgccggggt cgtaggcctg
     2941 cgcctccgtc gaggcgagcg gcgaggccgc ggccgcgatc gtggtcgcgc cgcccacggc
     3001 gccgaggaaa ttgcggcggt tcagcgccgt tcggggcttc tcggtggtca tcggctcctc
     3061 cgtccgggca tccggccctg cgggctgtcg tggcacatca tcactcgtcc atcgcgaagg
     3121 cttcggcctc cacggccatg aagacgcggc cgacggtgcc gaccgcacgg tagaagcggg
     3181 cgagctgcgc cgtctcgacg tccgcgaaga agcgcgcgcc ccaaggctcg agatggcgct
     3241 cgaagaagcg cttctcgccg ccggcttgcg cctcgaaccg ccggcccgcg aggcccgcca
     3301 tgacctcgca caggatggcg atgtgatcct ccggctcgcg caaggtctcg tccgcctcga
     3361 tcccgagagc accgaggtcc tggcgcaagc gcgcgagagg gcggccgtgc aggaagcccg
     3421 tcagatagta ggagccgtag ggcagaagct cgccctgccc gacgccgacg aacagatcga
     3481 agtactcgcg gctgacagcg tcggggtccg ccgtgcgcgc tgcatcggca agggcgatat
     3541 gggcaagccc aagcggcgaa gcgtcgccct tcaggtcggc aagccgcccg aggatctccg
     3601 ccgtcggcgc gcggctgagg agaagggcga gcagcgcgta ctcctgggcc cggagcgcat
     3661 cgacgtcatc ggctgcaagg acgctcgtca tggcctcggc gcctgcccgc agcgccaccg
     3721 cgccgacagc ccggatcgcc tgatccactg cgccctgttg catttccatc ccgcgcgatg
     3781 cggtcccggc ggacgccggg ccacatgtct attcatcggt catcatacgg ggccgcggct
     3841 tggccgcaac atcatatttc
//
LOCUS       DASQWN010000364         5417 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1353645, whole genome shotgun sequence.
ACCESSION   DASQWN010000364 DASQWN010000000
VERSION     DASQWN010000364.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 5417)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5417)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5417
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1353645"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..392
                     /locus_tag="VE686_06915"
     CDS             <1..392
                     /locus_tag="VE686_06915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012336544.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY84215.1"
                     /translation="GSMAPAWEAWEPLLTGNGYRFGLFDGLNRFYVAEEEPELAARLP
                     QEKADWGSVPHLWGAGRAPESPAHPDHALARALVDGFLARLPQLDRSLVADLLAAGGM
                     SADVRSDAVAAALGRIASRYDGGFPPD"
     gene            402..785
                     /locus_tag="VE686_06920"
     CDS             402..785
                     /locus_tag="VE686_06920"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY84216.1"
                     /translation="MSATLPGRRGFSVDIRLEATMDDRHDGRSLKDRDADQIRNGQRG
                     GGGSADPGAGAPEANDTLQKVWSEPGGEAYNYRNAMVGAGGKADDHSDLTAAETPETT
                     KHLSDATLSRDDIIRAGSGASERKD"
     gene            789..1004
                     /locus_tag="VE686_06925"
     CDS             789..1004
                     /locus_tag="VE686_06925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020809249.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY84217.1"
                     /translation="MPVGYGDNPPVGTGPPEPKPRPDADKAQKPSGELPAAGPHDDPA
                     LTNADATPGTGALPEPGADRGTDSTSG"
     gene            1039..1236
                     /locus_tag="VE686_06930"
     CDS             1039..1236
                     /locus_tag="VE686_06930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015927886.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY84218.1"
                     /translation="MTKSAGSASGGKTPIEQDQTDGGNASIDAPRLTPQGRASPEASG
                     TDSTRPSGKGAAQGQPDKAEG"
     gene            complement(1243..2001)
                     /locus_tag="VE686_06935"
     CDS             complement(1243..2001)
                     /locus_tag="VE686_06935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018045919.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysophospholipid acyltransferase family protein"
                     /protein_id="HYY84219.1"
                     /translation="MLLVRSFVFNVAFYLNLLVWMLVFLPALVMPRKVLIRAAQAWGT
                     SSVWLLQVLVGMTVEIRGRERIPPGGLLVAAKHQSFLETFALLPLVDDPAFILKRELL
                     WIPLFGWLAWKAGMIPIDRSGGAQALAAMNRRARAEIAAGRQILIFPEGTRRAAGAPP
                     AYKFGVAHLYRAFGVACLPVALNSGLYWPRRQFIRRPGKVVIEILDPIPPGLSRDVFL
                     QELQDRIETASNRLLAEGLADLGPAHALAGAGAR"
     gene            complement(2046..2819)
                     /locus_tag="VE686_06940"
     CDS             complement(2046..2819)
                     /locus_tag="VE686_06940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009491045.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdcF family protein"
                     /protein_id="HYY84220.1"
                     /translation="MISRTRYVTEAGPLHAAEPVGWGWSAQEPRRSAAPVRRGWPWKL
                     AVAAAFSVAAVAIAGFIAFVQLIARAEQPPATRTDAIVALTGGAQRIGDAIDLLARGY
                     GDRLLITGVNERTSRDEIARLNPGQRRLFDCCVDLDYRARNTIGNAIATRRWIADNGF
                     RSLIVVTSNYHMPRTLLELDHALPQVRKVPYAVVASSADMQGWWRSPTTMKLLAYEYA
                     KFVAMWARTRVEADPERSRVARIVGLAKPIKLVVQPLTR"
     gene            complement(2880..3857)
                     /locus_tag="VE686_06945"
     CDS             complement(2880..3857)
                     /locus_tag="VE686_06945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015927857.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HYY84221.1"
                     /translation="MDERTPPPPTVAHDAVEQDREELPVALRRDRPLVPVDSAGGRAL
                     VAVMAILTFLAALCAGAAQLVAANSAEWRATVVREATIQVRPLPNRDIEADVGRATQL
                     ARRTPGVRDAEPFTKTEAERLLEPWLGSGLNLEDLPVPRLVVLRLEDGGRADLGALRR
                     GLQAEVPGATVDDHGLWMARLSTMARTVTVVGVALVVLVLVAAALAVAFATRGAMAGN
                     REIVEVLHYVGADDRYIAREFQRRFFQMGLKGGAIGGAAALAVIAAFGVLAASLRASP
                     AGDQLEALFGAFDVGWGGYAAVVLIALAVSALAGGISGLTVRRFLNRSG"
     gene            complement(3863..4576)
                     /gene="ftsE"
                     /locus_tag="VE686_06950"
     CDS             complement(3863..4576)
                     /gene="ftsE"
                     /locus_tag="VE686_06950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020093599.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0000910 - cytokinesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cell division ATP-binding protein FtsE"
                     /protein_id="HYY84222.1"
                     /translation="MRDDLETETDGEPIPERAVVQLENVGVRYGMGPEVLHDVTFAIQ
                     PRSFQFLTGPSGAGKTTLLRLMLMSVAPTRGLMSLFGQEVGRISKPTLTSLRRRMGVV
                     FQDFRLLDHLTTYENVALPLRVQGRDEASYRSEVIELLRWVGLGERMYALPPVLSGGE
                     KQRAAIARALIMRPELLLADEPTGNVDPSLARRLLRLFIELNRLGTSVVIATHDLTLM
                     DQIDARRLVLGEGRLHIDE"
     gene            4750..5223
                     /locus_tag="VE686_06955"
     CDS             4750..5223
                     /locus_tag="VE686_06955"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY84223.1"
                     /translation="MSATAPARTRGLAGAAAIVCVAIGVAAVVGRAKVVAVAPGMAGL
                     YAAIGLPASAPALDFRGVGAEMVGTGSEAALVIEGEIANMSGDEAALPAIELSVRNAE
                     GRPFYTWTSEPPRRTLPANETTRFRARLSAPPAEGTQVLVRFASGRDGLAAGRPP"
     gene            5242..>5417
                     /locus_tag="VE686_06960"
     CDS             5242..>5417
                     /locus_tag="VE686_06960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009491048.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypoxanthine phosphoribosyltransferase"
                     /protein_id="HYY84224.1"
                     /translation="MTASPRVRILFDEETIAARNEDIARAVAGANPENLLVVAVLKGS
                     FMFAADLIRALHRAG"
BASE COUNT          873 a         1903 c         1953 g          688 t
ORIGIN      
        1 cgggcagcat ggcaccggcg tgggaggcct gggagccgct gctcaccggc aacggctatc
       61 gcttcgggct tttcgacggg ctcaaccggt tctacgtcgc cgaggaggag ccggaactcg
      121 ccgcccgcct gccgcaagag aaagccgact ggggcagcgt cccgcacctg tggggcgccg
      181 gccgcgctcc cgagagcccc gcccatcccg accacgcgct tgcgcgggcg ctggtcgacg
      241 gcttccttgc gcggctgccg caactcgacc gcagcctggt cgccgatctg cttgcggccg
      301 gagggatgtc ggccgacgtg cgtagcgacg ccgtggcggc ggctctcggg cgcatagcct
      361 cgcgttacga cggcggcttt ccgcccgact gacgatcaag cttgtccgca accctccccg
      421 gtcgtcgcgg gttctccgtc gacatccgac tggaggcgac gatggacgac cggcacgacg
      481 gacgctcgct caaggaccgc gacgcggacc agatccgcaa cgggcagcgc gggggcggcg
      541 gcagcgcgga tccgggtgcg ggcgcgcctg aggcgaacga caccctgcag aaggtctgga
      601 gcgagcctgg cggcgaggcc tacaactacc gcaacgcgat ggtcggcgcc ggcggcaagg
      661 ccgacgacca ctccgacctc acagcggccg agacgcccga gacgacgaaa cacctgagcg
      721 acgccactct ctcccgcgac gacatcatcc gtgccgggtc gggtgcgtcc gagcggaagg
      781 attgagccgt gccggtcgga tacggcgaca acccgcctgt cggcacggga cctccggagc
      841 ccaagcctcg ccctgacgcc gacaaggccc agaagccgtc cggggaactc ccggcggcgg
      901 gcccccacga cgatcctgcc cttacgaacg ccgacgcgac gccgggcacc ggggccctgc
      961 cggagccggg cgccgaccgc ggtaccgact cgactagcgg ctgagatgtc ggatttgcga
     1021 acacgaaggg atgacacgat gacgaagtcg gccggcagcg catcgggcgg caagacgccc
     1081 atcgagcagg atcagacgga cgggggcaac gcgtccatcg acgcgccccg cctgacgccg
     1141 caaggccgcg cgagccctga ggcgtcgggc accgactcga cccgtccgag cggcaaggga
     1201 gccgcccagg gtcagcccga caaggccgaa ggctagcgcg gctcagcggg cgcccgcgcc
     1261 cgcgagtgcg tgcgccggtc cgaggtcggc gagtccctcg gcgagaagcc ggttggaggc
     1321 ggtctcgatg cggtcctgca gctcctgcag gaagacgtcg cgcgacaggc cgggtgggat
     1381 cgggtcaagg atctcgatga cgaccttgcc cgggcggcgg atgaactgcc gccgcggcca
     1441 gtacaggccc gagttcaggg cgaccggcag gcacgcgacc ccgaacgccc gataaagatg
     1501 cgccacgccg aacttgtacg ccggcggggc gccagcggcg cgccgcgtgc cctcgggaaa
     1561 gatcagaatc tgccggcccg ccgcgatctc cgcgcgagca cgacggttca tggccgcgag
     1621 cgcctgggcg ccgccgctgc ggtcgattgg gatcatgccg gccttccagg cgagccagcc
     1681 gaacagtggg atccacaaca gctcgcgctt gaggatgaag gccgggtcat cgacgagcgg
     1741 gagcagcgcg aaggtctcga ggaacgactg gtgcttagcg gcgacgagca gcccgccggg
     1801 ggggatgcgc tcgcgcccgc ggatctcgac cgtcatgccg acgagcacct gcaggagcca
     1861 caccgacgag gttccccaag cctgcgcggc gcggatcagc accttccggg gcatgaccag
     1921 cgccggcagg aaaacgagca tccagacgag caggttcagg tagaacgcaa cgttgaagac
     1981 gaaggagcga acgaggagca tcggggcaag catcgggagc gaaccatcgc ccggtaaggc
     2041 cccgtttagc gcgtgagcgg ctgcaccacc agtttgatgg gcttggcgag gcccacgatc
     2101 ctggcgacgc gcgagcgctc cggatcggcc tccacgcgcg tgcgcgccca catggccacg
     2161 aacttcgcgt actcgtaggc caggagcttc atggtcgtcg ggctgcgcca ccagccctgc
     2221 atgtcggcgc tgctcgccac gaccgcataa ggaaccttgc gcacctgcgg caaggcgtgg
     2281 tcgagctcga gcagggtgcg cggcatgtga tagttcgagg tcacgacgat gagcgagcgg
     2341 aagccgttgt cggcaatcca gcgccgcgtc gcgatggcgt tgccgatggt gttccgggcc
     2401 cggtagtcga ggtccacgca gcaatcgaac agccggcgct ggccaggatt gagccgggcg
     2461 atctcgtccc ggctggtgcg ctcgttgacg ccggtaatga gcaggcggtc gccatagccc
     2521 cgggcgagca gatcgatggc gtcgccgatg cgctgggcgc cccccgtaag ggcgacgatg
     2581 gcgtccgtgc gggtcgcggg cggctgctcg gcgcgggcaa tgagctggac gaacgcaatg
     2641 aagccggcaa tggcgaccgc ggcgacgctg aaggcggccg cgacggcgag cttccagggc
     2701 cacccgcgcc gcaccggggc tgcgctgcgg cgcggctcct gcgccgacca cccccaaccg
     2761 acgggctcgg ccgcatgcag cggccccgcc tccgtgacgt atcgcgtccg cgaaatcatc
     2821 gaccccgagg atagccgaaa atacggcgat caggaggcgc cctgccccct cgggcaacct
     2881 cagccgctac ggttaagaaa ccgtctcacc gtgaggcccg agatgccgcc cgcgagggcg
     2941 gagacggcaa gcgcgatgag gaccacggcc gcgtacccgc cccagccgac atcgaaggcc
     3001 ccgaacaggg cttcgagctg atcgcccgca gggctggcgc gcagcgatgc ggccaggaca
     3061 ccgaaagccg cgatcacggc gagcgcggcc gcgcccccga tggccccgcc cttgaggccc
     3121 atctggaaga agcggcgctg gaattcgcgc gcgatgtagc gatcgtcagc gcccacgtag
     3181 tgcaggacct cgacgatctc gcggttgccc gccatggcgc cgcgggtcgc gaacgcgacc
     3241 gcgagcgccg ccgccaccag gacgagcacc acgagcgcca ccccgacgac ggtgacggtg
     3301 cgcgccatgg tggacaggcg ggccatccat agcccgtggt cgtcgacggt cgcgccgggc
     3361 acctcggcct gcaggccgcg ccgcaacgcc ccgaggtccg ctcggccgcc atcctcaagc
     3421 cgcaggacca cgagccgcgg aacgggcagg tcctcaaggt tgagcccgga cccgagccag
     3481 ggttcgagca ggcgctcggc ttccgttttg gtgaacggct cggcgtcacg cacgccgggc
     3541 gtccgccggg cgagctgcgt cgccctgccg acgtccgcct cgatgtcccg gttcggcagc
     3601 ggcctcacct ggatggttgc ttcgcgcacg acggtcgcgc gccactcggc cgagttcgcg
     3661 gcgacgagtt gcgccgcccc ggcacagagc gcggcgagga acgtcaggat cgccatgacg
     3721 gcgacgagcg cccgcccgcc ggcgctgtcg acggggacga gcgggcggtc gcggcgcagc
     3781 gccaccggga gctcttcgcg gtcctgctcc acggcatcgt gggcgaccgt cggcggggga
     3841 ggcgtcctct cgtccaccgg cgtcactcgt cgatgtggag ccgaccttcg cccaggacca
     3901 ggcgacgggc gtcgatctgg tccatgaggg tgaggtcgtg cgtggcgatg acgacggagg
     3961 tcccgagccg attgagctcg atgaaaaggc gcaggagccg gcgtgcgagc gacggatcga
     4021 cgttgccggt cggctcgtcg gcgagcagaa gctcgggtcg catgatgagg gcacgcgcga
     4081 tggcggcgcg ctgcttctcg ccgcccgaca gcaccggcgg caaggcgtac atgcgctcgc
     4141 cgagcccgac ccagcgcaaa agctcgatga cctcgctgcg atagctcgcc tcatccctgc
     4201 cctgcacgcg caacggcagg gccacgttct cgtaggtggt gaggtggtcg aggaggcgga
     4261 aatcctggaa caccacaccc atgcggcggc gaaggctcgt cagcgtcggc ttcgagatcc
     4321 gcccgacctc ctgcccgaac agggacatga ggccccgcgt cggtgcgacc gacatgagca
     4381 tgaggcgaag gagcgtcgtc tttccggcgc ccgagggccc ggtgaggaac tggaacgacc
     4441 gcggctggat cgcgaaggtc acgtcgtgca gcacctcggg tcccatgccg tagcggacgc
     4501 ccacgttctc gagctgcacc accgcccgct cggggatcgg ctcgccgtcg gtctccgtct
     4561 cgaggtcgtc gcgcaaccgc tttacccgcc gttaaccatg acggccgaca cgtcacggtg
     4621 gagcacgccg cggtgcggct gccggtgatt cgccatgctc atggtctgcc cgttctgcgc
     4681 aagccgatac agcgccgatc ctaacaggat cggagcagat ggtcgcatcg cgcgccgcgg
     4741 gagggcgtcg tgagcgcgac ggcgccggcg cgcacgcgcg gcctcgccgg ggcggctgcg
     4801 atcgtgtgcg tcgcgatcgg cgtggccgcc gtcgtcgggc gcgccaaggt cgtcgccgtg
     4861 gcgccgggaa tggccgggct ttacgccgcg atcggcctgc cggcgtcggc gccggccctc
     4921 gatttccgcg gcgtcggggc ggagatggtc gggaccggct cggaagccgc ccttgtgatc
     4981 gagggcgaga tcgccaacat gtcgggcgac gaagccgcgc tgccggccat cgagctcagc
     5041 gtccgcaacg ccgaaggacg gccgttttac acctggacga gcgaaccacc ccgtcggaca
     5101 ctgccggcga acgagacgac gcgcttccgg gcgcgcctct cggccccgcc ggcggaggga
     5161 acgcaggtgc tcgttcgctt cgcttcgggg cgcgacggtc tcgcggccgg ccgcccgccg
     5221 tagctcttga gtggaaagcc tatgaccgcc tctccccggg tccgcatcct cttcgacgaa
     5281 gagaccatcg cggcgcgcaa cgaggacatc gcccgggcgg tcgcgggtgc gaaccccgag
     5341 aacctcctcg tcgtcgcggt tctcaagggc agcttcatgt tcgcggccga cctgatccgg
     5401 gcgctccacc gggcggg
//
LOCUS       DASQWN010000365         4132 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_526780, whole genome shotgun sequence.
ACCESSION   DASQWN010000365 DASQWN010000000
VERSION     DASQWN010000365.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 4132)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4132)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4132
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_526780"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1001
                     /locus_tag="VE686_06965"
     CDS             <1..1001
                     /locus_tag="VE686_06965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018647739.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="CoA-binding protein"
                     /protein_id="HYY84225.1"
                     /translation="PNIYGFYYTWENLCATFCTAYDVRGHAALSSQSGGIGMAIIGFS
                     RSSKMGVSAIVGLGNKSDIDEDDLLTFFEHDDNTQIVAMHLEDLKDGRAFSDAAKRVS
                     KKKPVVVLKAGRTSLGARAASSHTGALAGNDKIYEDVLKQSGVIRARSLQDLLQFARG
                     VPVLPTPKGENVVIITGAGGSGVLLSDACVDNGLNLMTMPSDLDAAFRKFIPPFGAAG
                     NPVDITGGEPPTTYQNTVRLGLEDERIHSLILGYWHTIVTPPMVFARNMVQVVDEMRA
                     KGKVKPVVASLAGDVEVEEAAQYLYEHGIPAYAYSTELPVEVLGAKYKWARGAGLL"
     gene            1120..2877
                     /locus_tag="VE686_06970"
     CDS             1120..2877
                     /locus_tag="VE686_06970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010684467.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-ubiquinone oxidoreductase-F iron-sulfur
                     binding region domain-containing protein"
                     /protein_id="HYY84226.1"
                     /translation="MNVHDPRAPKPHGPTPNGVGNKDRSVHPGSGRRKTRDFPRGRQP
                     DSQSTDEVRELLGDRSRAPDLLIEHLHLLQDHFGCLHARHLVALSNEMRLALVEVYEV
                     ASFYAHFDIVMEDEPAPPPLTVRVCGSLTCAMSGADQLLKALPGTLGEGVRVVRAPCM
                     GGCHNAPVVAIGHALHEHATVDTVAEAVRAGHTHPHIPDHVDFDAYRAGGGYKLLEAC
                     LDGTRGLEDVLKPLEDSGLRGLGGAGFPTGRKWRFVRAESAPRLMAVNADEGEPGTFK
                     DRHYLETDPHRFLEGMLIGAWAVEATAVYIYLRDEYPQCRELLEREIAKVQAAGLSRH
                     TQIHLRRGAGAYICGEESAMLESIEGKRGLPRHKPPFPSQVGLFGRPTLINNVETLFW
                     VRDIVEKGPESFASHGRNGRKGLRSFSVSGRVKNPGVKLAPAGITLRELIDEYCGGMS
                     QGHTLRGYLPGGASGGILPASMDNIPLDFGTLEPHGCFIGSAAVVVLSDKDDMREVAL
                     NLMRFFEDESCGQCTPCRIGTEKAVMIMDRSEWDETLLNELTKVMTDASICGLGQAAM
                     NPVKQVLKHFREDVLKPAP"
     gene            2996..>4132
                     /locus_tag="VE686_06975"
     CDS             2996..>4132
                     /locus_tag="VE686_06975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015931687.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2Fe-2S iron-sulfur cluster-binding protein"
                     /protein_id="HYY84227.1"
                     /translation="MSDGLPIIEGVKFLLDGREVEAAPGETIWQVASRHGTEIPHLCY
                     SPAPGYRPDGNCRACMVEIEGERVLAASCVRKPAPGMKVSTATERAETSRKLVFELLV
                     ADQPERAQAHDPNSIFWNWADRVEVADSRFPALDRINKADDFSHPAMAVQLDACIHCG
                     LCVRACREVQVNDVIGMAMRGHIEKIVFDFDDPMGASTCVACGECVQACPTGALMEKS
                     LVDDAGVYNVANAPERHVDSVCPYCGVGCQLTYEIKDDRIVAVQGREGPSNQNRLCVK
                     GRFGFDYVHHPDRLTVPMIRKDGVSKHDVAIDPANPWTHFRPASWEEALDRAAGGLKG
                     IRDQHGGGALAGFGSAKGSNEEAYLFQKLVRTGFGTNNVDHCTRL"
BASE COUNT          677 a         1454 c         1381 g          620 t
ORIGIN      
        1 gcccgaacat ctacgggttc tactacactt gggaaaacct gtgcgcgacg ttctgcaccg
       61 cgtatgacgt gcggggtcat gcggccttgt cgtcgcagtc cggcggcatc ggcatggcga
      121 tcatcggctt cagccgttcc tccaagatgg gcgtttccgc catcgtcggg cttggaaaca
      181 agtcggacat cgacgaggac gacctgctga ccttcttcga gcatgacgac aacacccaga
      241 tcgtcgccat gcacctggaa gacctgaagg acggccgcgc gttctccgac gccgccaagc
      301 gggtttccaa gaaaaagccc gtcgtggtgt tgaaggcggg ccggacctcg ctgggtgcgc
      361 gggcggcaag ttcccacacg ggggcgctgg ccggcaacga caagatctac gaggacgtgc
      421 tgaagcagag cggcgtgatc cgcgcccggt ccttgcagga tctgttgcag ttcgcccgtg
      481 gcgtgccagt tctgccgacg ccgaagggcg agaacgtggt gatcatcacg ggtgccggcg
      541 gttcgggcgt gctgctgtcg gacgcctgcg tggacaacgg gctgaacctg atgaccatgc
      601 cgtccgatct ggacgcggcg ttccgcaagt tcatcccgcc gttcggtgcg gcgggcaacc
      661 cggtggacat cacgggcggc gagccgccga ccacctacca gaacaccgtc cggctgggtc
      721 ttgaggacga gcgcatccac tcgctgatcc tgggctactg gcacacgatc gtcacgccgc
      781 cgatggtctt cgcccgcaac atggtgcagg tggtcgacga gatgcgcgcc aagggcaagg
      841 tgaagcccgt cgtggcctcg ctcgccggcg acgtcgaggt cgaggaagcg gcgcagtacc
      901 tctacgagca cggcatcccg gcctacgcct attcgaccga gctgcccgtc gaggtgctcg
      961 gcgcgaagta caagtgggcc cgcggcgccg ggcttctgtg accgacgccg tcatcccggg
     1021 cgccgcagcg cggcgacccg ggatcgcgtc gggagtacgg cggcctggga tcccggatcg
     1081 cacctgcggc gcgtccggga tgacgtggaa taggcaacga tgaacgttca cgatccccgc
     1141 gccccgaagc cccacggacc gacgccgaac ggcgtcggca acaaggaccg cagcgtccat
     1201 cccggctccg gccggcgcaa gacccgcgat ttcccgcgcg ggcgccagcc cgactcgcag
     1261 tccaccgacg aggtgaggga gcttctcggc gatcgctcgc gcgcgcccga cctgctgatc
     1321 gagcacctgc acctcctgca ggaccatttc ggctgcctgc acgcgcgcca tctcgtggcg
     1381 ctctcgaacg aaatgcggct cgccctcgtc gaggtctacg aggtcgcgtc gttctacgcc
     1441 catttcgata tcgtcatgga ggacgagccc gcgccgccgc cgctgaccgt ccgcgtctgc
     1501 ggcagcctga cctgcgcgat gagcggtgcc gatcagctcc tgaaggcgct cccgggcacc
     1561 ctcggcgagg gcgtccgcgt cgtgcgggcg ccgtgcatgg gcggctgcca caacgcgccc
     1621 gtggtggcga tcggccacgc gctgcacgag catgcgacgg tcgacaccgt ggctgaggcg
     1681 gtccgcgccg gccacaccca cccgcacatt cccgaccacg tcgacttcga cgcctatcgg
     1741 gccggtggcg gctacaagct gctcgaggct tgtctcgacg gcacgcgcgg gctcgaggac
     1801 gtgctgaagc cgctcgagga ctcaggcctg cgcggcctcg gcggcgccgg cttcccgacc
     1861 gggcgcaagt ggcgcttcgt ccgcgccgag tccgccccgc gtctcatggc cgtcaacgcc
     1921 gacgagggcg agcccggcac cttcaaggac cggcactatc tcgagacgga cccgcaccgc
     1981 ttcctcgaag gcatgctcat cggcgcctgg gcggtcgagg ccactgccgt ctacatctat
     2041 ctgcgcgacg agtacccgca gtgccgcgag ctcctcgagc gcgagatcgc caaggtgcag
     2101 gcggcgggcc tctcccgcca cacgcagatc cacctgcgcc gtggcgccgg cgcctacatc
     2161 tgcggcgaag aatcggcgat gctcgagtcg atcgagggca agcgcgggct gccccgccac
     2221 aagcccccgt tcccgagcca agtcggcctg ttcggccggc cgacgctgat caacaacgtc
     2281 gaaacgctgt tctgggtgcg cgacatcgtc gagaagggcc cggagtcgtt cgcgagccac
     2341 ggccgcaacg gccggaaggg cctgcgcagc ttctcggtct cggggcgcgt gaagaacccc
     2401 ggcgtgaagc tcgcaccggc cggcatcacc ttgcgcgagc tcatcgacga gtactgcggc
     2461 ggcatgtccc agggccatac gctgaggggg tacctgccgg gcggcgcctc gggcggcatc
     2521 ctgccggcgt cgatggacaa cattcccctc gatttcggca cgctcgagcc gcacggctgc
     2581 ttcatcggct ctgccgccgt ggtcgttctc tccgacaagg acgacatgcg cgaggtcgcg
     2641 ctcaacctca tgcgcttctt cgaggacgag agctgcggcc agtgcacgcc ctgccgcatc
     2701 ggcaccgaga aggcggtcat gatcatggac cgctccgagt gggacgaaac cctgctcaac
     2761 gagttgacca aggtcatgac cgacgcgtcg atctgcggcc tcggccaggc ggccatgaac
     2821 ccggtgaagc aggtcctcaa gcatttccgc gaggacgtgc tgaagccggc gccatgacca
     2881 ccgcgcacgt catggtcggg cttgacccgg ccatcccgcc gagcggcgcg ctcatccgat
     2941 ggagatgccc ggctcaaggc cgggcatgac ggcataaaga ccaggatcaa gcccaatgtc
     3001 cgacggactt ccgatcatcg aaggcgtaaa gttccttctc gacggccgcg aggtcgaggc
     3061 cgcgccgggc gagaccatct ggcaggtggc gagccggcac ggcaccgaga tcccgcacct
     3121 gtgctactcg cccgcgccgg gctaccgccc cgacggcaac tgccgcgcct gcatggtcga
     3181 gatcgagggc gagcgcgtgc tcgccgcctc gtgcgtgcgc aagccggcgc ccggcatgaa
     3241 ggtctcgact gcaacggagc gcgccgagac gtcgcgcaag ctcgtcttcg agcttctcgt
     3301 ggcggaccag ccggagcgcg cgcaggcgca cgatccgaac tccatcttct ggaactgggc
     3361 cgaccgtgtc gaggtcgccg acagccgctt cccggcgctc gaccgcatca acaaggccga
     3421 cgacttcagc caccccgcca tggcggtgca gctcgacgcc tgcatccatt gcggcctgtg
     3481 cgtgcgcgcc tgccgcgagg tccaggtcaa tgacgtcatc ggcatggcca tgcgcggcca
     3541 catcgagaag atcgtcttcg acttcgacga tcccatgggc gcctcgacct gtgtcgcctg
     3601 cggcgagtgc gtgcaggcct gcccgaccgg cgcgctcatg gagaagagcc tcgtcgacga
     3661 cgcgggcgtc tacaacgtcg ccaacgcgcc tgagcgccac gtcgacagcg tgtgccccta
     3721 ttgcggcgtc ggctgccagc tcacctacga gatcaaggac gaccgcatcg tcgccgtgca
     3781 gggccgcgag ggtccgtcga accagaaccg gctgtgcgtg aagggccgct tcggcttcga
     3841 ttacgtgcac caccccgatc gcctgaccgt gccgatgatc cgcaaggacg gcgtgtcgaa
     3901 gcacgacgtg gccatcgatc cggcgaaccc gtggacgcac ttccgccccg cgagttggga
     3961 ggaggcgctc gaccgcgccg ccggcggcct gaagggcatc cgcgaccagc acggcggcgg
     4021 cgcgctcgcg ggcttcggct cggccaaggg ttcgaacgag gaagcctacc tgttccagaa
     4081 gctcgtgcgc acgggcttcg ggacgaacaa cgtcgaccac tgcacgcgcc tg
//
LOCUS       DASQWN010000366         2338 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_658519, whole genome shotgun sequence.
ACCESSION   DASQWN010000366 DASQWN010000000
VERSION     DASQWN010000366.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2338)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2338)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2338
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_658519"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..769
                     /gene="pheS"
                     /locus_tag="VE686_06980"
     CDS             <1..769
                     /gene="pheS"
                     /locus_tag="VE686_06980"
                     /EC_number="6.1.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015822209.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009328 - phenylalanine-tRNA ligase
                     complex [Evidence IEA];
                     GO_function: GO:0004826 - phenylalanine-tRNA ligase
                     activity [Evidence IEA];
                     GO_process: GO:0006432 - phenylalanyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="phenylalanine--tRNA ligase subunit alpha"
                     /protein_id="HYY84228.1"
                     /translation="GRIHPITQVMDELSAIFADMGFSIAEGPDIETDYLNFTALNFPE
                     GHPAREMHDTFFLRPDASGDRKVLRTHTSPVQIRTMKSVAPPIRVICPGRTYRHDSDQ
                     THTPMFHQVEGLVIDREAHIGHLKWILEEFCKAFFEVPEVKMRFRPSFFPFTEPSAEV
                     DIQCSRQGGEIRFGEGTDWLEILGCGMVHPNVLRNCGLDPDEFQGFAWGMGIDRIAML
                     KYGMPDLRPFFEADVRWLEHYGFRPLDIPNLVGGLTA"
     gene            766..1176
                     /locus_tag="VE686_06985"
     CDS             766..1176
                     /locus_tag="VE686_06985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006473267.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ASCH domain-containing protein"
                     /protein_id="HYY84229.1"
                     /translation="MSDIPERYRDLPRFAFGDGPALADELLDLVMAGRKTATCMTADD
                     PNRPRVGQHWIVLDGRGEPGCVIEKTELTERRFDEVDDAFARDEGEGDRTLDTWRRNH
                     RIYFGRLGKFGEDMTLVCERFRLVEVLRGPGARA"
     gene            1173..>2338
                     /gene="pheT"
                     /locus_tag="VE686_06990"
     CDS             1173..>2338
                     /gene="pheT"
                     /locus_tag="VE686_06990"
                     /EC_number="6.1.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012453516.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009328 - phenylalanine-tRNA ligase
                     complex [Evidence IEA];
                     GO_function: GO:0004826 - phenylalanine-tRNA ligase
                     activity [Evidence IEA];
                     GO_process: GO:0006432 - phenylalanyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phenylalanine--tRNA ligase subunit beta"
                     /protein_id="HYY84230.1"
                     /translation="MKFTLSWLKDHLETSASLDEIVETLTRIGLEVEAVEDHAKGLAP
                     YTVAYVVSAEQHPNADRLRVCMVDTGSGEPVQVVCGAPNARTGMKSVFAPPGTFIPGK
                     NITLGVGTIRGVESRGMLVSEMELQLSENHEGIIDLPDDAPVGQPYAAYAGLDDPVIE
                     INLTPNRPDCTSVHGIARDLAAAGLGTLIEKPIAEIRGKSPCPVPVALAFAAGDEHLC
                     PAFALRLVRGVRNGPSPEWMQRRLAAIGLRPINALVDITNYVTFDRGRPLHVFDAAKV
                     TGALTVRRARDGEELQALDGRTYKLDPSMVVIADENGPESIAGIMGGEHSGCDESTTD
                     VLIESALWDPLNIAQSGRKLGIVTDARYRFERGVDPAFTVPGLELATRMVMDLCG"
BASE COUNT          391 a          810 c          771 g          366 t
ORIGIN      
        1 cgggcgcatc cacccgatca cgcaggtgat ggacgagctc agcgccatct tcgccgacat
       61 gggcttctcg atcgccgagg gacccgacat cgagactgac tacctcaact tcacggccct
      121 gaacttcccc gaagggcacc cggcccggga gatgcacgac acgttcttcc tgcgaccgga
      181 cgcgagcgga gaccgcaagg tcctgcgcac ccacacatcg ccggtgcaga tccgtaccat
      241 gaagtccgtc gcgccgccga tccgggtgat ctgcccgggg aggacctacc gccacgactc
      301 cgaccagacg cacacaccga tgttccatca ggtcgagggc ctggtgatcg accgcgaggc
      361 ccacattggg cacctcaagt ggatcctcga ggagttctgc aaggcgttct tcgaggtgcc
      421 agaagtgaag atgcgcttca ggccgtcctt cttccccttc acggagccct ccgcggaggt
      481 cgacatccag tgctcgcggc agggcggcga gatccgcttc ggcgagggca ccgattggct
      541 cgagatcctc ggctgcggga tggtgcaccc gaacgtgctg cgcaactgcg gcctcgaccc
      601 ggacgagttc cagggcttcg cctggggcat gggcatcgac cgcatcgcca tgctcaaata
      661 cggcatgccg gacctgcgcc cattcttcga ggccgacgtg cgctggctcg agcactacgg
      721 cttccggccc ctcgacatcc cgaacctcgt cggcgggctc accgcgtgag tgacataccg
      781 gagcgctacc gcgacctgcc gcggttcgcg ttcggcgacg gcccggcgct agcggatgag
      841 ctgctggacc tcgtcatggc ggggcggaag accgcgacgt gcatgacggc ggacgatccg
      901 aaccgaccgc gggtcgggca gcactggatc gtgctcgacg gccgcggcga gcccggctgc
      961 gtcatcgaga agacggagct caccgagcgc cgcttcgacg aagtcgacga cgcgttcgcg
     1021 cgcgacgagg gcgagggcga ccgcacgctc gacacctggc gccgcaacca tcgcatctat
     1081 ttcggacggc tcggcaagtt cggggaggac atgacgctcg tgtgcgagcg cttccgcctc
     1141 gtcgaggtgc tgcgcggtcc aggagcacgc gcatgaaatt cacgctctcc tggctcaagg
     1201 accacctcga gacctccgcg tcccttgacg aaatcgtcga gaccctgacg cgcatagggc
     1261 tcgaggtcga ggccgtcgag gaccacgcga aggggcttgc gccctacacg gtcgcgtatg
     1321 tcgtctcggc cgagcagcat ccgaacgccg accggttgcg cgtgtgcatg gtcgacaccg
     1381 gttccggcga gccggtgcag gtcgtttgcg gggcgccgaa cgcgcgcacg ggcatgaaga
     1441 gcgtgttcgc gccgcccggc acctttatcc cgggtaagaa catcaccctc ggcgtcggca
     1501 cgatccgcgg cgtcgagagc cgcggcatgc tggtttccga gatggagctc cagctctcag
     1561 agaatcacga gggcatcatc gacctgccag acgatgctcc cgtcgggcag ccgtacgcgg
     1621 cgtacgctgg cctcgacgac ccggtgatcg agatcaacct gaccccgaac cggccggact
     1681 gcacgagcgt gcacgggatc gcgcgcgacc tcgccgcggc cggcctcggc acccttattg
     1741 aaaagcccat cgccgaaatc cgcggcaaga gtccgtgccc cgtgccggtg gccctcgcct
     1801 tcgcagcggg cgacgagcac ctttgcccgg cgttcgccct gcgcctcgtt cgcggcgtca
     1861 ggaacggccc gtcgccggag tggatgcagc ggcgcctcgc ggcgatcggg cttcgtccca
     1921 tcaacgcgct cgtcgacatc acgaactacg tcaccttcga ccgaggccgg ccgctgcacg
     1981 tgttcgacgc tgctaaggtc acaggcgccc tgacggtccg ccgggcgcga gacggtgagg
     2041 aactgcaggc tctcgacggg cgcacgtaca agctcgaccc gtcgatggtg gtcatcgccg
     2101 acgagaatgg gcctgagtcg atcgccggca tcatgggcgg cgagcactcc gggtgcgacg
     2161 agtcgactac cgacgtgctg atcgagtccg cgctctggga cccgctaaac atcgcccagt
     2221 cgggccgtaa gctcgggatt gtcaccgacg cgcgctatcg gttcgagcgc ggtgtcgatc
     2281 ccgctttcac cgtgccgggc ctcgagctcg ccacgcgcat ggtcatggac ctgtgtgg
//
LOCUS       DASQWN010000367         2963 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_759012, whole genome shotgun sequence.
ACCESSION   DASQWN010000367 DASQWN010000000
VERSION     DASQWN010000367.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2963)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2963)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2963
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_759012"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1475
                     /gene="ftsH"
                     /locus_tag="VE686_06995"
     CDS             <1..1475
                     /gene="ftsH"
                     /locus_tag="VE686_06995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015821682.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA];
                     GO_process: GO:0051301 - cell division [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="ATP-dependent zinc metalloprotease FtsH"
                     /protein_id="HYY84231.1"
                     /translation="RQLDQYNVRYTGRIESTFLRDILSWVLPVLLFFGVWAYLGRRMA
                     QGLGGRMPKGVLLVGPPGTGKTLIAKAVAGEAKVPFFSISGSEFVEMFVGVGAARVRD
                     LFEQARAKAPAIIFIDELDALGRARGMGGLAGGHDEKEQTLNQLLVELDGFDSRTGLV
                     LLAATNRPEILDPALLRAGRFDRQVLVDRPDKKGRIQILAVHMRKAKLAPDVDAEKVA
                     ALTPGFTGADLENLVNEATLLATRRRGDAVTMADFNNAVERIVAGLEKRNRLLNPRER
                     EIVAYHEMGHALVAMAVPGSDPVHKVSIIPRGVGALGYTIQRPTEDRFLMTREELENK
                     MAVLLGGRAAEAIVFGHLSTGAADDLARVTDIARSMVTRYGMSAKLGHVALEKDGRSF
                     LSPNPMFEPPRERNYSDETATAIDDEVRGIVEGAFRRTLDLLGERRDVLERTARRLLE
                     KETLDEAELVSLVGSAAAPGRVAVEVAASAPSRDRVAGPL"
     gene            complement(1546..>2963)
                     /locus_tag="VE686_07000"
     CDS             complement(1546..>2963)
                     /locus_tag="VE686_07000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019403226.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HYY84232.1"
                     /translation="KYTFLVTMTVMGIATFVVGLLPGYATIGILAPVGFIICRLLQGL
                     ALGGEYGGAATYVAEHAPQGRRGFYTSWIQTTATVGLFLSLIVILLLRLSMSPEAFAA
                     WGWRVPFLVSILLLAVSIWIRLQLAESPAFTKMKEEGTGSKAPLTEAFGKWRNAKVAL
                     IALLGGTAGQAVVWYTGQFYALFFLTQTLKVDGTTANILIAASLAIGTPGFILFGWLS
                     DKIGRKPIILAGCLIAAITYFPLFGMLAKYGNPDLVAAQERAPVTVTADPARCSFQFN
                     PVGTAAFTTSCDVVKSFLARNSVNYSNQAAPAGQLAQVKIGDKVVQGVELTGLPAAEA
                     KAKGDALTKEMTDAIRAAGYPAGAADPAKMNKTMMIVILTILVLYVTMVYGPIAALLV
                     ELFPTRIRYTGMSLPYHIGNGWFGGFLPPTAFAIVAATGDIYSGLWYPIVIALMTFVV
                     GLLLMPETKDRDIFSYEGEAR"
BASE COUNT          488 a         1008 c         1036 g          431 t
ORIGIN      
        1 cccgccagct cgaccagtac aacgtgcgct acacaggccg gatcgagagc accttcctgc
       61 gcgacatcct ctcctgggtg ctgccggtgc tgctgttctt cggcgtctgg gcctatctcg
      121 ggcggcgcat ggcgcagggg ctcggcgggc gcatgccgaa gggcgtgctc ctcgtcggcc
      181 cgcccggcac gggcaagacg ctgatcgcca aggcggtcgc gggcgaagcc aaggtgccgt
      241 tcttctcgat ctcgggctcc gagttcgtag agatgttcgt aggcgtcggc gcggcgcgcg
      301 tgcgcgacct cttcgagcag gcccgcgcca aggcgccggc catcatcttc atcgacgagc
      361 tcgacgcgct cggccgcgcc cgcggcatgg gcgggctcgc gggcgggcac gacgagaagg
      421 agcagacgct caaccagctc ctcgtcgagc tcgacggctt cgattcccgc accgggctgg
      481 tgcttcttgc ggccacgaac cggcccgaga tcctcgatcc cgcactgctc cgcgccgggc
      541 gcttcgaccg ccaggtgctc gtcgaccggc ccgacaagaa gggccgcatc cagatccttg
      601 ccgtgcacat gcgcaaggcg aagctcgcgc cggacgtcga tgccgagaag gtcgcggccc
      661 tgacgccggg cttcacgggc gccgacctcg agaacctcgt caacgaggcg accctgctgg
      721 cgacccgccg gcgcggcgac gccgtcacca tggcggactt caacaacgcc gtggagcgca
      781 tcgtcgccgg gctcgagaag cgcaaccggc tcctcaaccc ccgcgagcgc gagatcgtcg
      841 cctaccacga gatgggccac gcgctcgtcg ccatggcggt gccggggtcc gacccggtgc
      901 acaaggtctc gatcatcccc cgcggcgtcg gcgcgctcgg ctacaccatc cagcggccga
      961 ccgaggaccg cttcctgatg acgcgcgagg agctcgagaa caagatggcg gtgcttctcg
     1021 gcgggcgcgc cgccgaggcc atcgtcttcg gccacctgtc gacgggagcg gccgatgacc
     1081 tcgcccgcgt caccgacatc gcccgctcca tggtgacgcg ctacggcatg tccgcgaagc
     1141 tcgggcacgt ggcgctcgag aaggacgggc gctcgttcct gagcccgaac ccgatgttcg
     1201 agcctccgcg cgagcgcaac tattccgacg agaccgcgac tgccatcgac gacgaggtcc
     1261 gcggcatcgt ggaaggcgcc ttccgccgca ccctcgacct cctcggggag cggcgcgacg
     1321 tgcttgagcg gaccgcccgg cgtctcctcg agaaggagac cctcgacgag gcggagctcg
     1381 tgagcctcgt cggatcggcc gccgccccgg gccgcgtcgc cgtcgaggtg gcggcgagcg
     1441 ccccttcccg ggacagggtc gccggcccgc tctgatcaac cccaacgaaa aaagccccgc
     1501 cttgcggcgg ggctttcgcg tgtcgtcctt gtcgaagggc ggcggctagc gagcctcgcc
     1561 ctcgtagctg aagatgtcgc ggtccttggt ctccggcatc agcaggaggc cgaccacgaa
     1621 ggtcatcagc gcgatgacga tcgggtacca gaggcccgag tagatgtcgc ccgtcgccgc
     1681 cacgatggcg aaggccgtcg gaggcaggaa gccgccgaac cagccgttgc cgatgtgata
     1741 gggcagtgac atgccggtgt agcggatgcg ggtcgggaac agctcgacca gcaacgccgc
     1801 gatcgggccg tagaccatgg tgacgtagag cacgaggatc gtgaggatca cgatcatcat
     1861 ggtcttgttc atcttggccg gatcggccgc gccggcggga tagcccgctg cccggatggc
     1921 gtccgtcatc tccttcgtca gcgcgtcacc cttggccttg gcctcggcgg ccggcagccc
     1981 ggtgagctcg acgccctgga caaccttgtc gccgatcttg acctgggcga gctggccggc
     2041 cggagccgcc tggttcgagt agttcaccga gttgcgggcg aggaacgact tcaccacgtc
     2101 gcaggaggtg gtgaaggcgg ccgtgccgac cgggttgaac tggaacgagc accgggccgg
     2161 atcggccgtc accgtcacgg gcgccctctc ctgcgcggcg acgaggtccg ggttgccgta
     2221 cttggcgagc atcccgaaga gcgggaagta ggtgatcgcc gcgatcaggc agccggcgag
     2281 gatgatcggc ttgcggccga tcttgtccga gagccagccg aacaggatga agcccggcgt
     2341 gccgatggcg agcgaggccg caatcaggat attcgccgtc gtgccgtcga ccttcagcgt
     2401 ctgcgtcagg aagaacaggg cgtagaactg gcccgtgtac cagacgacgg cctgcccggc
     2461 ggtgccgccg agaagcgcga tgagggcgac cttggcgttg cgccacttgc cgaaagcttc
     2521 cgtaagcggg gccttcgagc cggtgccctc ctccttcatc ttggtgaagg ccggcgattc
     2581 ggcgagctgc agccggatcc agatcgacac cgcgaggagc aggatcgaga cgaggaacgg
     2641 gacgcgccag ccccaggctg cgaacgcctc gggcgacatg ctgaggcgga gcagcaggat
     2701 gacgatcagc gacaggaaca ggccgaccgt cgcggtggtc tggatccacg aggtgtagaa
     2761 tccgcgccgg ccttggggcg catgctcggc cacgtaggtc gccgcaccgc cgtactcgcc
     2821 gccgagcgcc aggccctgca ggaggcggca gatgataaag ccgaccgggg cgaggatgcc
     2881 gatcgtcgca tagccgggca aaaggccgac cacgaaggtc gcgataccca tgaccgtcat
     2941 ggtgacgagg aaggtatact tgc
//
LOCUS       DASQWN010000368         3318 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1056041, whole genome shotgun sequence.
ACCESSION   DASQWN010000368 DASQWN010000000
VERSION     DASQWN010000368.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 3318)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3318)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3318
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1056041"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..190
                     /locus_tag="VE686_07005"
     CDS             <1..190
                     /locus_tag="VE686_07005"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY84233.1"
                     /translation="AAAICATVLWAVCIASAIYELPRRPAGEAWVVTASDTMSSRPML
                     VRANVRFQTAARDVSLSR"
     gene            complement(278..694)
                     /locus_tag="VE686_07010"
     CDS             complement(278..694)
                     /locus_tag="VE686_07010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008837934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HIT family protein"
                     /protein_id="HYY84234.1"
                     /translation="MPYDEQNVFAKILRGELPAHKVYEDEATLALMDIMPRGEGHTLV
                     IPKAPARNILDADPEALAAVIKTAQKVARAVTKAFGADGVTVQQFNEAAGGQVVFHLH
                     VHVLPRFECVPMKPPGTMGDPETLARNAEKIRTALA"
     gene            complement(767..1750)
                     /locus_tag="VE686_07015"
     CDS             complement(767..1750)
                     /locus_tag="VE686_07015"
                     /inference="COORDINATES: protein motif:HMM:NF016292.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HYY84235.1"
                     /translation="MRRRDVLALAAGASFSSAAAHAQPSGVRRVGFLMGGRGEADPEG
                     QARLAVVRSGLRGLGWEEGRNLHLELRWAAGDRAQIDAHAADLVRLNPDVIVGNSTPA
                     IAALARATKSIPIVFAQLVDPVGLGFVASLARPGGNVTGFTFVDLDLVAKWPEVLKEA
                     VPGLTRAALLFNPDSTAFYRDFLRELESRGASSGLYAAPVRTLGEIEPAIADIARQPG
                     GGLVIPPNPFIGSNRRLVAELAQKHKVPSISVYRDYAEAGGLMSYGPDSLDIFRRSTE
                     YVDRILKGASPADLPVQAPTRYELVVNLKAARAIGIEVAPAFLVRADEVVE"
     gene            complement(2130..2546)
                     /locus_tag="VE686_07020"
     CDS             complement(2130..2546)
                     /locus_tag="VE686_07020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003597962.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042314 - bacteriochlorophyll binding
                     [Evidence IEA];
                     GO_process: GO:0019684 - photosynthesis, light reaction
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PRC-barrel domain-containing protein"
                     /protein_id="HYY84236.1"
                     /translation="MPTELPNERTLRAPGTMELDPSAEGVAIDETTRLIASNKVEGTA
                     VYNQEGEHLGSVYNFMVDKVSGQVAYAVMSFGGFLGLGDSYHPLPWKALRYDTKLGGY
                     VVDLDKDRLAGAPSYRGGEDPFADPAFGPKLTDYYG"
     gene            2999..>3318
                     /locus_tag="VE686_07025"
     CDS             2999..>3318
                     /locus_tag="VE686_07025"
                     /inference="COORDINATES: protein motif:HMM:NF014601.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-dehydropantoate 2-reductase N-terminal
                     domain-containing protein"
                     /protein_id="HYY84237.1"
                     /translation="MLQNGIDHAQRLAGTVPPSAVLPTVVNCGAERVAPGHVVHHQAS
                     RLIAPQGEAARRLRDLFAGTDVEVVETTDFLSDAWRKLLANVAVNPLTALTMRRIGAL
                     AAPDL"
BASE COUNT          473 a         1143 c         1186 g          516 t
ORIGIN      
        1 cgccgcagca atctgcgcca ccgtgttgtg ggcagtctgc atagcgtccg cgatctacga
       61 gctcccgagg cgtccagccg gggaggcctg ggtcgtgaca gcctcggaca cgatgtcgag
      121 ccgcccgatg ctggtccgcg ccaacgtgcg cttccagacc gccgcaaggg acgtgtccct
      181 ctcgcggtag agcaccgggc cgactctggc gcccgccgga gtgtctcgca agcgccgtcg
      241 tggctacgcc gacgtcgccc ggcgagcacg ccgtggccta ggccagcgcg gtgcggatct
      301 tctcggcgtt ccgggcgagc gtctcggggt cgcccatggt gccgggaggc ttcatgggca
      361 cgcactcgaa gcgcgggagg acgtggacgt ggaggtggaa caccacctgc ccgccggcgg
      421 cctcgttgaa ctgctgcacc gtgacgccgt cggcgccgaa ggccttcgtc acggcccggg
      481 cgaccttctg ggcggtcttg atgaccgccg cgagagcctc cgggtcggca tcgaggatgt
      541 tgcgggccgg cgccttcggg atgacgaggg tgtgaccctc gccccggggc atgatgtcca
      601 tgagggcgag cgtcgcctcg tcttcgtaga ccttgtgggc cggcaactcg ccccgcagga
      661 tcttggcgaa gacgttttgc tcgtcgtaag gcatgcgggc gctccccggt cgatcgcgcc
      721 tcgaatggcg gctcgcccgc agcaggtcaa gccggcgtcg cgggcattac tcgacgacct
      781 cgtcggcgcg gacgaggaag gccggcgcga cctcgatccc gatcgctctt gcggccttga
      841 ggttgaccac gagctcgtac ctggtcggcg cctgcacggg cagatcggcc gggcttgctc
      901 ccttgaggat gcggtcgacg tactcggtcg agcgccggaa gatatcgagg gaatcagggc
      961 cgtacgacat cagcccgccc gcctccgcgt agtcccggta gaccgagatc gagggcacct
     1021 tgtgcttctg cgcgagctcg gcgacgagcc tgcggttcga gccgatgaag gggttcggcg
     1081 ggatgacgag accgcctccc ggctgccggg cgatgtccgc aatggcgggc tcgatctctc
     1141 cgagtgtcct gaccggcgcc gcgtacaggc cggagcttgc gccgcggctt tcgagctcgc
     1201 gcaggaagtc gcggtagaat gcggtgctgt cggggttgaa caggagcgcg gcccgagtca
     1261 ggcccggcac ggcctccttc agcacctcgg gccatttcgc cacgagatcg agatcgacga
     1321 aggtgaagcc cgtgacgttc ccgcccggcc gcgcgaggct cgccacgaac ccgagcccga
     1381 cgggatcgac gagctgcgcg aacacgatcg ggatcgactt cgtcgccctc gccaaggcgg
     1441 caatggccgg cgtgctgttc ccgacgatga cgtcggggtt gagccggacg aggtcggcgg
     1501 catgggcgtc gatctgggcc cggtcgcccg ccgcccagcg cagctcgagg tgaaggttgc
     1561 ggccttcctc ccagccgagg ccgcgcaatc cgctccgcac cacggcgagc cgcgcctggc
     1621 cttcgggatc cgcctcgccg cggcccccca tcaggaagcc gacgcgccgc acgccggagg
     1681 gctgcgcgtg cgccgctgcg gacgaaaacg acgcccccgc ggcaagtgcc agaacgtccc
     1741 gccgtctcac gccgcgcttc cccccactcc ccgcgctgcc cacgtcagtc atggagcgta
     1801 gcagcgtcgc gcgccgaggg cacctgccga gtgggaggcg acgcgaccct cacggctaga
     1861 agcagaatcc gctggggatg gcacgagccg ttcaagcagc cctttcccgg aggcccggaa
     1921 cggagcgaag cggagtggag ggtgatccgg gatccagcgc agcagagttg cgaagcaccg
     1981 aatattctgc agcgctgtaa gagcatgtgc cgctgcgcgg cgagttgttg cgctggatcc
     2041 cgggttccgt tccgcttcgc tccacggccc cgggaaaggg ggcgctggac cattggagcg
     2101 agtcgatcag ggcgggatga tccttctagc tagccgtagt agtccgtgag cttcgggccg
     2161 aaggccgggt cggcgaaggg gtcttcgccg ccgcggtagc tcggggcgcc ggcgagacgg
     2221 tccttgtcga gatcgaccac gtagccgccg agcttggtgt cgtagcgcag ggccttccag
     2281 ggcagggggt ggtagctgtc gccaaggccg aggaagccgc cgaacgacat caccgcatag
     2341 gcgacctggc cgctcacctt gtcgaccatg aagttgtaca ccgagccgag gtgctcgccc
     2401 tcttggttgt agacggccgt gccctcgacc ttgttggagg cgatgagacg cgtcgtctcg
     2461 tcgatggcga cgccctcggc ggatggatcg agctccatgg ttccgggcgc ccgcagggtg
     2521 cgttcgttcg gcagttcggt cggcatgcag tcacctctct cggggaacaa ctggccgagc
     2581 cggggtacgt tcctgcggcc gcccgcgcag cgcttgggcg ggcatgccta aaccgtctcg
     2641 ttgccaagac ggccgtatcc gcgcaatggg ggcgctggcg cccttctcgg gtacggagac
     2701 acgatggatt cgacacctcc ccggcgcgtg gccgtcatcg gcgcaggagc gatcggcggc
     2761 ttctttgctg cccgggcgca tggcgctgga caccgcgtcg tcctgtgcgc gcgcacgccc
     2821 atcgaccggc tcgtgatcga ggagaagggg gagcttcgtg aagcggcggt ggacgtcgcc
     2881 ctcgaccccg ccggggtcgc gcccgtcgag tgggttctcc tcgccaccaa ggcgcaggac
     2941 accgccggcg cgctgccctg gctccgggcg ctctgcggcg ccgggaccac cgtccccggt
     3001 gctccagaac ggcatcgacc atgcgcagcg gctcgccggg acggtgccgc cctcggcggt
     3061 cctgccgacc gtggtcaact gcggcgccga gcgggtggcg ccgggccatg tcgtgcacca
     3121 ccaggcgagc cgcctcatcg ctccccaggg cgaggccgcc cgccgcctgc gcgatctctt
     3181 cgccgggacc gatgtcgagg tcgttgagac caccgatttc ctcagcgacg cctggcgcaa
     3241 gctgttggcg aatgtcgccg tgaacccgct gacggcgctg accatgcgcc gcatcggcgc
     3301 gctcgccgcc cccgacct
//
LOCUS       DASQWN010000369         2731 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_824679, whole genome shotgun sequence.
ACCESSION   DASQWN010000369 DASQWN010000000
VERSION     DASQWN010000369.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2731)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2731)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2731
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_824679"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..303
                     /locus_tag="VE686_07030"
     CDS             <1..303
                     /locus_tag="VE686_07030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018044566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX hydrolase"
                     /protein_id="HYY84238.1"
                     /translation="AVQFVARAITPPKRPKRFDTRFFAVDRRAIAHEVGGVIGPDAEL
                     IELAWVNLEEAKRLDLPTITTVILDELETRLKAGFAPELPVPFYYERNRKFQREVL"
     gene            complement(353..1087)
                     /locus_tag="VE686_07035"
     CDS             complement(353..1087)
                     /locus_tag="VE686_07035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019404100.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF502 domain-containing protein"
                     /protein_id="HYY84239.1"
                     /translation="MTPVEPAPPNLGLGASGLRVRTSARARLRNYFFTGLILAGPIAI
                     TIYIAWWLITLVDGWVKPLVPGRYLPDTYLPFTVPGLGLLIAFTGLTLLGFLAANLVG
                     RSLIEVGEVLLARMPVVSSIYKGVKQIFETVFKQDGQSFRQVGLIEWPGPGLWSLCFI
                     TEPVAGTLAEALPPGDHVCVFVPCTPNPTTGYLVVMERARVKEVDLSTDEAFKLLMSI
                     GIIQPGSRTAPLLPGLVAVPVPQPLN"
     gene            complement(1170..>2731)
                     /gene="glmS"
                     /locus_tag="VE686_07040"
     CDS             complement(1170..>2731)
                     /gene="glmS"
                     /locus_tag="VE686_07040"
                     /EC_number="2.6.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015824273.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004360 - glutamine-fructose-6-phosphate
                     transaminase (isomerizing) activity [Evidence IEA];
                     GO_process: GO:0006040 - amino sugar metabolic process
                     [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="glutamine--fructose-6-phosphate transaminase
                     (isomerizing)"
                     /protein_id="HYY84240.1"
                     /translation="TDRLAVVHNGIIENFRKLKAELEGEGIAFETETDTEVVAQLVSY
                     EMDRGKCPVEAVAATLPRLRGAFALAFLFKGEEDLLICARNGPPLAVGYGDGEMYLGS
                     DALALAPFTDEITYLEEGDWAVLSRTSVVYRDASNRIVERPRQKIAAGSFLADRGNYR
                     HFMAKEIHEQPEVVGRTLAHYIDMAAGRVCALESVPFDWKALPRISIVACGTAYLAGL
                     TAKYWFERLARLPVEVDVASEFRYREAPLDPGGLMIVVSQSGETADTLACLRYAKACG
                     QHVLSVVNVPTSTIARESTVVTPTLAGPEIGVASTKAFTCQLAVLLCLAMAAGRARGA
                     LSDADERALVDALIAIPGNMVEALRHEHGTEQLARELSKATDVLYLGRGTSYPLAMEG
                     ALKLKEISYIHAEGYAAGELKHGPIALIDEALPVIVIAPHDAWFEKTTSNMQEVAARG
                     GRIVLMTDAKGAAEVGIDTLATLVLPTVHPVVAPLVYALPVQLLAYHTAVFMGKDVDQ
                     PRNLAKSVTVE"
BASE COUNT          434 a          907 c          982 g          408 t
ORIGIN      
        1 gcggtgcagt tcgtcgcccg ggccattacg ccgcccaagc gcccgaagcg cttcgacacc
       61 cgcttcttcg ccgtcgaccg ccgcgccatc gcgcacgagg tcggcggcgt catcggcccc
      121 gacgccgagc tcatcgagct cgcctgggtc aacctcgagg aagccaagcg cctcgacctc
      181 cccaccatca cgacggtgat cctggacgaa ctcgagaccc gcctcaaagc cggcttcgcc
      241 ccggagctgc cggtgccgtt ctattacgag cggaacagga agtttcagcg cgaggtgctg
      301 taggggctgt caccgcccgg cgggccaaaa ttcctgggct cgaagcgttt gctcagttca
      361 aaggttgcgg caccggcacg gcgacgagcc ccggcagcaa tggtgcggtg cggcttccgg
      421 gctggatgat gcctatggac atgaggagct tgaaggcctc gtcggtcgag aggtcgacct
      481 ccttcacgcg ggcgcgttcc atgacgacga ggtagccggt cgtcgggttc ggcgtgcagg
      541 ggacgaagac gcagacatgg tcgcccggcg gcagggcctc ggcgagggtg ccggccacag
      601 gctcggtgat gaagcacaag gaccacaggc cggggcccgg ccactcgatg agcccgacct
      661 gacggaagct ctggccgtcc tgcttgaaca ccgtctcgaa gatctgcttg acgcccttgt
      721 agatgctgct gaccaccggc atgcgggcga gcagcacctc gccaacctcg atgaggctgc
      781 gcccgacgag gttcgcggcc aggaacccga gcagcgtcag gcccgtgaag gcgatgagga
      841 ggccgaggcc cggcaccgtg aacggcaggt aggtgtcggg caggtagcgc cccggcacga
      901 ggggcttcac ccagccgtcg acgagggtga tcagccacca cgcgatgtag atcgtgatgg
      961 cgatcggccc ggcgaggatg aggccggtga agaagtagtt gcgcaaccgc gcccgcgcgc
     1021 tcgtgcgcac ccgcagtccg gatgcgccga ggccgaggtt tggaggcgca ggctcgacgg
     1081 gggtcatgct ctcaaggggg cggccggctt cgagcctcca gtcgtagccg aagccccgcc
     1141 cggggctcaa gcgcaacgct tgtgcagcgc tactcgacgg tcacggactt cgcgaggttg
     1201 cgcggctggt cgacgtcttt ccccatgaac acggccgtgt ggtaggcgag aagctgcacc
     1261 ggcagggcat agacgagggg cgcgacgacc ggatgcaccg tcggcagcac cagggtcgcg
     1321 agggtgtcga tgccgacctc ggcggcgccc ttcgcgtccg tcatcagcac gatgcgcccg
     1381 ccgcgcgccg ccacctcctg catgttcgag gtcgtcttct cgaaccacgc gtcgtgcggc
     1441 gcgatgacga tcaccggcag cgcctcgtcg atgagcgcga tcgggccgtg cttgagctcg
     1501 cccgccgcat agccctcggc gtggatgtag gagatctcct tgagcttcag ggcaccctcc
     1561 atggcgaggg ggtacgaggt gccgcgcccg aggtacagca cgtccgtggc cttggagagc
     1621 tcgcgcgcga gctgctcggt gccgtgctcg tggcggagcg cctcgaccat gttgcccggg
     1681 atggcgatca gcgcgtcgac gagggcccgt tcgtcggcgt ccgacagcgc tccgcgcgcc
     1741 cggcccgccg ccatggcgag gcagaggagg accgcgagct ggcaggtgaa cgccttggtc
     1801 gaggcgacgc cgatctcggg gccggcaagc gtcggcgtca cgaccgtgct ctcgcgggcg
     1861 atggtcgagg tcgggacgtt gacgaccgag aggacgtgct ggccgcacgc cttggcgtag
     1921 cgcaggcagg cgagcgtgtc ggcggtctcg cccgattgcg acaccacgat catcagcccg
     1981 ccggggtcga ggggcgcctc gcggtagcgg aactcggagg cgacgtcgac ctcgaccggc
     2041 aggcgcgcca ggcgctcgaa ccagtacttc gcggtgaggc cggcgaggta ggcggtgccg
     2101 caggcgacga tggagatgcg cggcagcgcc ttccagtcga acgggacgct ttcgagcgcg
     2161 cacactcggc ccgccgccat gtcgatgtaa tgcgccagcg tgcggccgac gacctccggc
     2221 tgctcgtgga tctccttcgc catgaagtgg cggtagttgc cgcggtcggc gaggaacgag
     2281 ccggcggcaa tcttctgccg cggccgctcg acgatccggt tgctcgcgtc gcggtagacg
     2341 actgaggtgc gcgacaggac cgcccagtcg ccctcctcga ggtaagtgat ctcgtccgtg
     2401 aagggagcga gcgcgagcgc gtcggagccg agatacatct cgccgtcgcc gtagccgaca
     2461 gccaacggcg ggccgttgcg ggcgcagatg aggaggtcct cctcgccctt gaacaggaag
     2521 gcgagcgcga aggcgccgcg cagccgcggc agggtcgcgg ccaccgcctc gaccgggcac
     2581 ttcccgcgat ccatctcgta gctgacgagc tgggccacca cctcggtgtc ggtttcggtc
     2641 tcgaaggcga tgccctcgcc ttccaactcg gccttcaact tgcggaaatt ctcgataatg
     2701 ccgttgtgga cgacggcgag ccggtcggtc g
//
LOCUS       DASQWN010000370         2283 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_824698, whole genome shotgun sequence.
ACCESSION   DASQWN010000370 DASQWN010000000
VERSION     DASQWN010000370.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2283)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2283)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2283
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_824698"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..199)
                     /locus_tag="VE686_07045"
     CDS             complement(<1..199)
                     /locus_tag="VE686_07045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015931016.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EamA/RhaT family transporter"
                     /protein_id="HYY84241.1"
                     /translation="MPPAPADLLARVAPPLFVVIWATGFVVARLVAPHADPLAFLTLR
                     FSLAALVLAAVAVIAGARWPAT"
     gene            327..1217
                     /locus_tag="VE686_07050"
     CDS             327..1217
                     /locus_tag="VE686_07050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019903357.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YihY/virulence factor BrkB family protein"
                     /protein_id="HYY84242.1"
                     /translation="MSRVRIYFELMAIAFQRFVAHDGWAIASHIALSVLTSMFPFLIL
                     LTAVGGVFGSASLANEAGDLIVEAWPKEVAGPIAGEIHRVLTEQRGGIVTLGAVLALY
                     FSSSGVESLRVGLNRAYGIRETRPWWLTRLESIAYVIFGAFAMLAFALLIVLFPLIWR
                     GVVSNLPRLEPFGLTFGVARLTLATFIIIVALIIAHKFIAAGRRPLWSVLPGIATTLV
                     LWLVGGLGFGYYLDTFSSAYVSMYGGLATAMVALVFLYWLAAMFIFGGELNGTIIQAK
                     RRRLKPGRPPAGFQNVVPGP"
     gene            complement(1227..2189)
                     /locus_tag="VE686_07055"
     CDS             complement(1227..2189)
                     /locus_tag="VE686_07055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009210464.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0042597 - periplasmic space [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tripartite tricarboxylate transporter substrate
                     binding protein"
                     /protein_id="HYY84243.1"
                     /translation="MRLTKRALLALGAVIACTSIASAFPDRPVQIIVPWAAGGGVDTV
                     VRIFGNGFEKELGVPVNVVNRPGGGGVTGHTAIATATPDGYTLGGASPEIAFYKAMGL
                     GDITTESFDLFSRISLIPAGVTVREDAPYKDLKEFLAAVKNSPKGTLMASGTGTGGSW
                     HIAAGGLLKAAGMEADRLRWVPSQGGAPALQDVAAGGITAFTGSPIEAKPLLEARKVR
                     TLALMTEERPASFPDIPTTKENGIDWTYQNWFALAAPKGIPQDRREKLFAAAQRAMAR
                     PEVQDAMKARGITPVWDKPGEFDAYVKVFVARGTEVLKDLGLTK"
BASE COUNT          290 a          817 c          796 g          380 t
ORIGIN      
        1 gggtcgcggg ccagcgcgcg ccggcgatca ccgcgacggc cgcgagcacc agggcggcca
       61 agctgaaccg caaggtcagg aaggcgaggg gatcggcatg gggagcgacg aggcgcgcca
      121 ccacgaaccc cgtcgcccaa atgacgacga agagcggcgg cgcgacgcgc gcgaggaggt
      181 cggcgggggc agggggcatc gggcgccaca aaccatgagc gccgccgggc cgcaaccgct
      241 gcgggccggg gttgcctctt gcgggggcgc acgtcatgtg gacggcggcg ttccctgccg
      301 agcactcccg gacacctcgt cagcccgtga gccgcgtgcg catctacttc gagctcatgg
      361 cgatcgcgtt ccagcgcttc gtcgcccacg acggctgggc catcgcgagc cacatcgccc
      421 tgtcggtgct gacctcgatg ttcccgttcc tgatcctgct cacggcggtc ggcggcgtgt
      481 tcggctcggc ctcgctcgcc aacgaggccg gggacctcat cgtcgaggct tggccgaagg
      541 aggtcgccgg cccgatcgcg ggcgagatcc accgggtcct gacggaacag cgcggcggca
      601 tcgttactct cggcgccgtg cttgccctgt acttctcctc gagcggggtc gagagcctgc
      661 gcgtcggcct caaccgcgcc tacggcatcc gcgagacgcg gccgtggtgg ctgacccggc
      721 tcgaatcgat cgcgtacgtg atcttcggcg cctttgccat gctggccttc gccttgctta
      781 tcgtcctgtt tccgctgatc tggcgcggcg tggtctccaa cctcccccgg ctcgagccgt
      841 tcggcctcac cttcggcgtg gcgcgcctga cgctcgcgac cttcatcatc atcgtcgccc
      901 tgatcatcgc ccacaagttc atcgccgccg gccgccggcc gctgtggtcg gtgctccccg
      961 gcatcgccac gaccctcgtg ctgtggctcg tcgggggctt gggcttcggc tactacctcg
     1021 acaccttctc gagcgcctac gtgtccatgt acggcgggct tgccaccgcg atggtggcgc
     1081 tcgtgttcct gtattggctc gccgccatgt tcatcttcgg cggcgagctt aacggcacca
     1141 tcatccaggc gaagcgccgc cgcctgaagc ccggccgccc gccggcaggg ttccagaacg
     1201 tggtgccggg gccctgagcg ccgggctcac ttcgtcaggc cgaggtcctt gagcacctcg
     1261 gtgccgcggg ccacgaagac cttgacgtag gcgtcgaact cgccgggctt gtcccagacg
     1321 ggcgtgatcc cgcgcgcctt catggcgtcc tggacctccg ggcgcgccat cgcccgctgc
     1381 gccgccgcga acagcttctc ccggcgatcc tgcgggatgc ccttcggcgc ggcgagcgcg
     1441 aaccagttct ggtaggtcca gtcgatccca ttctccttgg tggtcgggat gtccgggaag
     1501 ctcgccgggc gctcctcggt catgagcgcg agggtgcgca ccttgcgcgc ctcgaggagg
     1561 ggcttcgcct cgatgggcga gcccgtgaat gccgtgatgc cgccggccgc gacgtcctgc
     1621 agcgcgggcg cgccgccctg gctgggaacc cagcgcagcc ggtcggcttc catgccggcc
     1681 gccttgagga ggccgccggc ggcgatgtgc caggatccgc cggtcccggt gcccgacgcc
     1741 atgagcgtcc ccttcgggct gttcttcacg gcggccagga actccttgag gtctttgtag
     1801 ggcgcgtcct cgcgcacggt gacgccggcg gggatgagcg agatgcgcga gaacaggtcg
     1861 aagctctcgg tggtgatgtc gccgaggccc atcgccttgt agaaggcgat ctcggggctc
     1921 gcgccgccga gcgtgtagcc gtcgggcgtc gccgtcgcga tggcggtgtg gccggtgacc
     1981 ccgccgccgc cggggcggtt gaccacgttc acggggacgc cgagctcctt ctcgaagccg
     2041 ttgccgaaga tgcgcacgac cgtgtcgacg ccgccgcccg ccgcccacgg gacgatgatc
     2101 tgcaccggcc gatcggggaa cgccgacgcg atgctcgtgc aggcgatcac ggcgccaagg
     2161 gccagcaggg cccgcttcgt cagcctcatc cgtcttcctc cctcgcgcgt cgcgttcgtt
     2221 ttcgggcgga catcgaggtc cgtcttaccc gagcaggctt aaggcaagca cggcggtcgc
     2281 gcc
//
LOCUS       DASQWN010000371         2475 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1453727, whole genome shotgun sequence.
ACCESSION   DASQWN010000371 DASQWN010000000
VERSION     DASQWN010000371.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2475)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2475)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2475
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1453727"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..300)
                     /locus_tag="VE686_07060"
     CDS             complement(<1..300)
                     /locus_tag="VE686_07060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015926961.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transglycosylase domain-containing protein"
                     /protein_id="HYY84244.1"
                     /translation="MKRVVGVGAVLVSMMGAAGAGEAPSFWDLKPEHLRILVAAPQVM
                     VTRTAAGFDAYCRCPVVLRPSEIPESVKKAIISVEDRRYMDHGGVDLIALASVLRG"
     gene            complement(492..2069)
                     /gene="ggt"
                     /locus_tag="VE686_07065"
     CDS             complement(492..2069)
                     /gene="ggt"
                     /locus_tag="VE686_07065"
                     /EC_number="2.3.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019195531.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006750 - glutathione biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="gamma-glutamyltransferase"
                     /protein_id="HYY84245.1"
                     /translation="MRDFFPPGRSLAVGSTGMAATSHPLSTLAAVDVLKAGGNAMDAA
                     IAAVAVQCVVEPAMTGIGGDCFVLYSEKGGVPIALNGSGRAPDGANAEWFADQGLSEI
                     AVTSPHSVTVPGAVDAWCTLNAEHGTKGLDELFAPAIRFAEDGYRVTPRVAFDWARNI
                     AKLSHDPEAKAAFLPGGKAPQVGDVMRLPALASTLRRIASKGRSAFYEGEVAAEIAGK
                     LRQLGGHHSEADFARQRSVSVQPIHTRFREVEVYECPPNGQGLIALMMLNLADHVDLK
                     GGSLADRTHVLAEITKAAYHARDTHVGDPEHGDSPAEHLLSQDWVRRVLPHIDAKRAK
                     PLATWDEVAHKDTVYLTVVDRELNAVSFINSLFGAFGSGIFAPKSGVLLHHRGSAFRT
                     TPGHPNAIGPGSRPLHTIIPGLVMKGGRAILPFGVMGGQYQATGHVDFLSKVFDLGLD
                     IQQASDAPRSFATAGRLQLEPTFAPDVVEDLRGRGHEIEIVDSPIGGCQAILIDHQRG
                     ALFGASDHRKDGFALGI"
BASE COUNT          414 a          818 c          843 g          400 t
ORIGIN      
        1 gccgcgcaag acggacgcga gagcgatcag gtccactccg ccgtggtcca tgtagcggcg
       61 gtcctcgacg gagatgatcg ccttcttgac tgattccggg atctcgctcg gcctcagcac
      121 gaccgggcag cggcagtagg cgtcaaagcc ggctgctgtc cgagtgacca tgacctgcgg
      181 agcggcgacg agaatgcgaa ggtgctctgg cttcaaatcc cagaatgacg gtgcctcgcc
      241 tgcacctgcc gcgcccatca tgctgaccaa tacagcaccg acgccgacga cccgcttcat
      301 gggcccattc ccccacacgg cagcctcagc gatcgagacc ggcgtcgggg agagaagctg
      361 tgattggcgt gctcccacta caaggggtgc gacaacatct gcggccgcat cgcgctccta
      421 gggctcccca caagccccgt gtcgagcgac gtttttttca gtgacgacga cgccgagagc
      481 gcctggtccg ctcagatccc gagggcgaac ccgtccttgc gatgatcgga ggcgccgaac
      541 aacgccccgc gctgatggtc gatcaggatc gcctggcaac cgccgatggg cgagtccacg
      601 atttcaatct catgcccccg gccgcgaagg tcctcaacca cgtccggcgc gaaggtcggc
      661 tcgagctgca gccggcctgc cgttgcgaag ctgcgcggcg cgtcagaagc ctgctgaatg
      721 tccaaaccga ggtcgaaaac cttggagagg aaatcgacgt ggccggtagc ctgatattgg
      781 ccgcccatga cgccgaaggg caggatcgcg cgcccgccct tcatgaccaa gccggggatg
      841 atggtatgca gcggccggct gcccgggccg atggcgtttg ggtgaccggg ggtggtgcgg
      901 aaggcgctac cccgatgatg aaggagcacg cccgatttcg gcgcgaagat gcccgacccg
      961 aacgcgccga agagcgagtt gatgaacgat actgcgttga gctcgcggtc gacgacggtc
     1021 agatacaccg tgtccttgtg cgcgacttcg tcccacgtcg ccagcggctt ggcgcgcttc
     1081 gcatcgatgt ggggcaggac gcgccgcacc cagtcctgag agaggagatg ctctgccggc
     1141 gaatcgccat gttcggggtc gccaacgtgc gtgtcacggg cgtggtaggc ggccttggtg
     1201 atctcggcga gcacatgcgt ccggtcggca agggagccac ccttcaggtc cacgtgatcg
     1261 gcaaggttga gcatcataag tgcgatgagg ccctggccgt tcggcgggca ctcgtagacc
     1321 tccacctcgc ggaacctggt gtggatcggc tggactgaga ccgagcgctg gcgggcgaag
     1381 tcggcctccg agtgatggcc gccgagttgg cgcagcttgc cggcgatctc ggccgcgacc
     1441 tctccctcgt agaacgcgct tcggcccttg ctcgcgatcc gccggagcgt actcgcgagc
     1501 gccgggagcc gcatcacatc cccgacttga ggagccttgc cgccgggcag gaaagccgcc
     1561 ttcgcctccg ggtcatgcga gagcttcgcg atgttgcggg cccaatcgaa ggcgacacga
     1621 ggcgtgaccc gatatccatc ctcggcgaag cggattgccg gagcgaagag ctcgtcgagg
     1681 cccttcgtcc cgtgttccgc gttcagggtg caccaggcat cgaccgcgcc cggcaccgtc
     1741 accgaatgcg gcgaggtcac ggcgatctcg gaaaggccct ggtcggcgaa ccactccgcg
     1801 ttggcgccgt ccggcgcgcg gcccgagccg ttcagggcga tcggcacgcc acccttctcg
     1861 gagtagagca cgaaacagtc gccgccgatg ccggtcatgg ccggctcaac gacgcattgg
     1921 acggcgacgg ccgcgatcgc agcatccatc gcgttgcccc ctgccttgag gacgtcgacg
     1981 gccgccaggg tcgagagtgg gtgagaggtg gccgccatcc cggtgctccc gacagcgagg
     2041 gaacgtcccg gggggaagaa gtcgcgcatg gcaagtctcg ctgatgggcg ctcgagagag
     2101 ctcgcgagcg ccggaccctc gctgctcccg cctgtgagag ccgggccgca aacgtggcac
     2161 tcgagtgtgc atctcgtcat accggagtgg gctttggttg gacaagcgtg ccggatcagg
     2221 gcggcacgtc ggtctcgcct tcgagggcgg gatgccatct cggtcgtgca acgcgagaca
     2281 cgtcggcgtg gcccgccttc tgcgtcgccg ccccggcccg cgtctaggag cctcaacagg
     2341 gttgtggtag tcgccggaag aattctctcg cggcccggtc caggtgcaag cgtttctctt
     2401 cgatctcctg acgcaggccc agagctcgcc gggcctcggc tacgccggcc ttgcggcggc
     2461 cgccttcacg gcggc
//
LOCUS       DASQWN010000372         8336 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_328877, whole genome shotgun sequence.
ACCESSION   DASQWN010000372 DASQWN010000000
VERSION     DASQWN010000372.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 8336)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8336)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8336
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_328877"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(45..356)
                     /locus_tag="VE686_07070"
     CDS             complement(45..356)
                     /locus_tag="VE686_07070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007564597.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY84246.1"
                     /translation="MSLTGRFNFRRTWTGKIVLQVEDERRSMFGKGFRKRWRDANVLD
                     LAAPSLRRLIDLRLKPQYGAEAPAAAAPAAVDGMAAPIEVMPTVPARTEGQPSGRIVT
                     H"
     gene            complement(448..882)
                     /locus_tag="VE686_07075"
     CDS             complement(448..882)
                     /locus_tag="VE686_07075"
                     /EC_number="3.1.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007560438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016790 - thiolester hydrolase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PaaI family thioesterase"
                     /protein_id="HYY84247.1"
                     /translation="MAEPTKMTRDEVEAFLDEVFPQRNQGRGASVVEEVGPLFARVRL
                     VFDERDLRPGGTISGPAMMGLADLALYVAILANIGPVALTVTTNLSFNFLRKPGQRDL
                     IAECRLLKLGKRLAVGEVALRSDGEPDVVCHATGTYSIPSRG"
     gene            940..1758
                     /locus_tag="VE686_07080"
     CDS             940..1758
                     /locus_tag="VE686_07080"
                     /EC_number="4.2.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012111858.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-CoA hydratase"
                     /protein_id="HYY84248.1"
                     /translation="MNVHSPIAADEAILVRDHRDGVAELMLNRPQARNALSEALLDAL
                     NAELDRVAADRTVRAVIVTGAPTIFSAGHDLKEMRGHWGDADRGRAYYEDVLARCSAM
                     MQRIVALPQPVIAAVEGVATAAGAQLVASCDLAVAGANARFATPGVHIGLFCSTPMVA
                     LSRNLAPKHAMEMLLLGEMIGAEDAQRFGLVNRVVAAGEALAEARRLAAVIASKSPLT
                     VKIGKRAFYEQIEMPLADAYAHATRVMVDNMLARDAEEGIGAFVDKRDPTWEGR"
     gene            1903..2643
                     /locus_tag="VE686_07085"
     CDS             1903..2643
                     /locus_tag="VE686_07085"
                     /inference="COORDINATES: protein motif:HMM:NF014035.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite exporter TauE/SafE family protein"
                     /protein_id="HYY84249.1"
                     /translation="MTSLPEWLLPVLLFGSAALYTSVGHAGASAYLASMALVGVAPET
                     MRPTALVLNIFVAGFSAVRFWRAGLVDRRLALWLVLGAAPLAFVGGAVKLPGDVYRPL
                     VGVLLIVAAIRLLLPIAVTANREPRRPHAALAAATGALIGLLSGLTGTGGGIFLSPIL
                     IFGGWAATRNASGIAISFILANSIFGLLGNLASVQRLPGETPLYVAAALLGALVGTAL
                     GVKRLPSGGILKALGVVLVIAGLKLILT"
     gene            2683..3210
                     /locus_tag="VE686_07090"
     CDS             2683..3210
                     /locus_tag="VE686_07090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019400124.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0120225 - coenzyme A binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CoA-binding protein"
                     /protein_id="HYY84250.1"
                     /translation="MDHDAYPDDYVRRILKGVKTIALVGASNNPARPSWIVTKYLSER
                     GYDVIPINPGLAGKEILGLKVYASLAEVPRPIDMVEIFRNSQAAGPITDQALALDPPP
                     KVIWMQLSVRNDEAAARAEAQGVEVVMNRCPKIEYGRLSGEISWQGINSRIISSKKAT
                     LAGKGFQKLTIHRPQ"
     gene            3236..4024
                     /locus_tag="VE686_07095"
     CDS             3236..4024
                     /locus_tag="VE686_07095"
                     /inference="COORDINATES: protein motif:HMM:NF024430.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3891 family protein"
                     /protein_id="HYY84251.1"
                     /translation="MLLREDGEAAIAIPQPSHSWLSGQLARAWGNERFATPSPFEEVC
                     LAAEQHDIGWLTWEAEPVLDPVSGRPKTFMQVGPETHTQLWRDGVRRAGIYGRYAALL
                     VSLHADTIYGRFFRFDKAPAEEARLVRAFLDEQHAFQQATIASLRADPLTASDVEEEA
                     IDRNRLTIAALDWMSLHVCWGVNEDVRIPEVPVAGIERIAMRLRPGAVPEEIVVDPWP
                     FRPERLAVRAEGRRLSGRYEDDASLRTALGRAEPVPIRASLRPA"
     gene            4103..4318
                     /locus_tag="VE686_07100"
     CDS             4103..4318
                     /locus_tag="VE686_07100"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY84252.1"
                     /translation="MRDILRNQFEAMRERPAERLLKPGIKAAVIVAILSVAAHFASER
                     SYDRSTLAKLAAGGPAAKAPATTARRP"
     gene            4315..5046
                     /locus_tag="VE686_07105"
     CDS             4315..5046
                     /locus_tag="VE686_07105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011472062.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY84253.1"
                     /translation="MTSTFRDERNARALARLRKALPPVFPGSVLAHALARPFTPPTPR
                     LAVDSYWRNHPVRADRLARALAAKSGAPAGWTWQLGARSPEGLPGGLRSPPAPYREKP
                     FARGPGHCCVCGQPVYRFGWHVDACGDGKPNRNARWHGCCVVAWKLWTAPRTYLRPLR
                     KLQGRLCPATGKRLLKSGEVDHRLALHRVWRERRDRPWPELLAFWGTPNLQVINRDAH
                     ASKTGLEARVRAESARAPAPAAVAS"
     gene            5058..5396
                     /locus_tag="VE686_07110"
     CDS             5058..5396
                     /locus_tag="VE686_07110"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY84254.1"
                     /translation="MPRSFKAVLDETVGFAQEALVSIEAGDFPERELHYLRQRLLDAL
                     ALFERDAGIEAAVADLYAAATALAIAQARSAGPGNVREERAARDAFVRFRRRITGALP
                     NAAARESGIA"
     gene            5473..6183
                     /locus_tag="VE686_07115"
     CDS             5473..6183
                     /locus_tag="VE686_07115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019400194.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alanyl-tRNA editing protein"
                     /protein_id="HYY84255.1"
                     /translation="MSATQLLFRDDAYARACEAGVLSVTPDGVVLDRTVFYAQGGGQP
                     GDVGALVREDGTEVAVTNTVYGPDRTTIVHLISGADAFQPGERVTARLDWDRRYPRMR
                     VHTALHLLSVVLPYPVTGGAIGDGDGRLDFDIPEAGLDKAEIAEKLNALIARDAPVGE
                     RWITDAELDANPGLVKTMSVKPPRGAGRVRLVEIEGIDLQPCGGTHVRRTAEIGTVVV
                     TDIEKKGKQNRRVRIALA"
     gene            complement(6204..6911)
                     /locus_tag="VE686_07120"
     CDS             complement(6204..6911)
                     /locus_tag="VE686_07120"
                     /EC_number="2.4.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012322211.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004588 - orotate
                     phosphoribosyltransferase activity [Evidence IEA];
                     GO_process: GO:0009116 - nucleoside metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="orotate phosphoribosyltransferase"
                     /protein_id="HYY84256.1"
                     /translation="MSTFALPVDKAAIAQQTARMMLEIKAIHFNAAQPFIFTSGWASP
                     VYVDCRKIISYPRLRSALMDFAAATIVRDVGYESIDIVAGGETAGIPFAAWIADKLGL
                     PMQYIRKKPKGFGRNAQIEGEVVAGARTLLVEDLATDGRSKVNFCQALRQAGAGVDHC
                     FVLFFYDIFPKSQEIFSELNITLHHLATWWDILAAAKASGHFDPGVLSEVESFLHNPA
                     KWSAAHGGISDFAASAA"
     gene            complement(6942..7976)
                     /gene="pyrC"
                     /locus_tag="VE686_07125"
     CDS             complement(6942..7976)
                     /gene="pyrC"
                     /locus_tag="VE686_07125"
                     /EC_number="3.5.2.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019400630.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004151 - dihydroorotase activity
                     [Evidence IEA];
                     GO_process: GO:0009220 - pyrimidine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroorotase"
                     /protein_id="HYY84257.1"
                     /translation="MRTITIRRPDDWHVHFRDGAILREVVPYTARAFGRAIVMPNLTP
                     PVTTAAMAAAYRERIMAAVPAGAGFTPLMTCYLTDHTDPRDLVAGHRDGVFTAAKLYP
                     AHATTNSAHGVSDIARIYPVLEAMEEHGIPLLTHGEITRPEVDIFDREKGFVDEVLVP
                     TLERFPRLKVVMEHVTTAEGVEVVRAHATRMGATLTPQHLLYNRNALFQGGLRPHVYC
                     LPVLKRERHRLALRAAATGGEANFFLGTDTAPHLRHLKEADCGCAGVFSAPVAIQAYL
                     RVFAEENALDRFEAFASLNGPAFYGLPPNEERVTFAQGRAFTAERVAVAGEGEIVCLF
                     EGERVDWAAA"
     gene            complement(7982..>8336)
                     /locus_tag="VE686_07130"
     CDS             complement(7982..>8336)
                     /locus_tag="VE686_07130"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY84258.1"
                     /translation="RTVAEGLAAEMAEFNARAGAPIAGAVMGATLAAPILDPVVAALD
                     GALMLTPGIGAQGATFADLEGTMAAARRRVIPTASRSALASGFTDNALRTSVAKAATE
                     AREFRASHSEARQTR"
BASE COUNT         1189 a         3006 c         2890 g         1251 t
ORIGIN      
        1 cttggctgat gcggtacctt aataccgcat caaaaacggc tgcgctagtg cgtgacgatg
       61 cggccgctcg gctggccctc tgtgcgggcc ggcaccgtgg gcatgacctc gatcggcgcc
      121 gccatcccgt cgaccgcggc cggtgccgcg gccgccggag cctccgcccc gtactgcggc
      181 ttcaggcgca ggtcgatcag gcggcgcagc gagggtgcag cgaggtcgag cacgttggcg
      241 tcgcgccaac gcttgcgaaa gcccttgccg aacatcgagc ggcgctcgtc ctccacctgg
      301 agcacgatct tgccggtcca cgtccggcgg aaattgaagc gaccggtgag ggacatgcgc
      361 gccaccgctg ggttgaggac ttgctaaaca gcgaacgcag gcgaacggac aaggtttcaa
      421 gaaccgccct ccctgactgc aagatgccta gccccggctc ggaatcgagt aggtcccggt
      481 cgcgtggcac acgacgtcgg gctcgccgtc ggaccgcaac gcgacctccc cgactgcgag
      541 gcgcttgccg agcttcagga ggcggcactc ggcgatcagg tcgcgctggc cgggcttgcg
      601 caggaagttg aacgacaggt ttgtggtcac ggtgagcgcg accggtccga tgttggcgag
      661 gatcgcgaca tagagcgcga ggtcggcaag gcccatcatg gcgggccccg agatcgtgcc
      721 ccccggccgc aggtcgcgtt cgtcgaagac gagccggacg cgcgcgaaca gcgggcccac
      781 ctcctcgacg acgctggcgc cacgcccctg attgcgctgc gggaagacct cgtcgaggaa
      841 ggcttcgacc tcgtcgcggg tcatcttggt cggctcggcc atgcctctct cctgcgtgcg
      901 cccttgcagc acggtcggcc acggaggaca atgcgcctca tgaacgtgca ctcacccatt
      961 gcggcggacg aggcgatcct tgtgcgcgac caccgcgacg gcgtggcgga gctgatgctc
     1021 aaccggccgc aggcccgcaa cgccctctcc gaggccctgc tcgacgcgct caacgcggag
     1081 ctcgaccgcg tcgccgcgga tcgcaccgtc cgcgccgtga tcgtcacggg tgcgcccacc
     1141 atcttctcgg ccgggcacga tctcaaggag atgcgtggcc attggggcga tgcggatcgc
     1201 ggccgggcgt actacgagga cgtgttggcg cgctgctcgg ccatgatgca acggatcgtg
     1261 gccctgcccc agcccgtgat cgcggccgtc gagggcgtcg ccacggcggc cggcgcgcag
     1321 ctcgtcgcct cctgcgacct cgccgtggcg ggggcgaatg cccgcttcgc cacccctggg
     1381 gtgcacatcg ggctcttctg ctcgacgccc atggtcgcgc tgtcgcgcaa cctcgccccc
     1441 aagcacgcca tggagatgct gcttcttggc gagatgatcg gcgccgagga cgcccagcgc
     1501 ttcgggctcg tcaaccgcgt cgtcgccgcc ggcgaggcgc tcgccgaggc gcgccgcctc
     1561 gccgccgtca tcgcctcgaa gtcgccgctg acggtcaaga tcggcaagcg cgccttctac
     1621 gagcagatcg agatgccgct cgccgacgcc tatgcccatg cgacacgcgt catggtcgac
     1681 aacatgctcg cccgcgacgc cgaggaaggc atcggcgcct tcgtcgacaa gcgcgacccg
     1741 acctgggaag gccgctagcc gccgcacgac ggcgcttgac cctgccgggc gttgctgaaa
     1801 ggtgaggcgc gctccgagcc gatgggccgg cgcgcctgcc gctccgccgg gagccccttc
     1861 tcgttgctgc gcgcctgaca cggcgcgcga ccgggcttcc gcatgacctc cctccccgaa
     1921 tggctcctgc ccgtcctcct gttcgggtcg gccgcgctct acaccagcgt cggccacgcc
     1981 ggcgcttcag cgtacctcgc ctccatggcg ctcgtgggcg tcgcgcccga gaccatgcgg
     2041 ccgacggccc tcgtgctgaa catcttcgtc gccggcttct cggccgtccg cttctggcgc
     2101 gccggtctcg tcgaccgcag gcttgcgctg tggctggtcc tcggagccgc cccccttgcc
     2161 ttcgtgggcg gggccgtgaa gctgccaggc gacgtctacc gccccctcgt cggggttctc
     2221 ctgatcgtcg cggcgatccg cctcctcctg ccgatcgccg tcacggcgaa ccgggagccc
     2281 aggcggccgc acgccgcgct cgctgccgcg acgggtgccc tcatcgggct cctctcgggc
     2341 ctcaccggca cgggcggcgg catcttcctg tcgccgattc tgatcttcgg cggctgggct
     2401 gcgacgcgga acgcgtcggg aatcgccatc agcttcatcc ttgccaactc gatcttcggg
     2461 cttctcggca acctggcgtc ggtgcagcgg cttccgggcg agaccccgct ctacgtcgcg
     2521 gcggcgctcc tcggcgccct cgtcggcacg gcgctcgggg tcaagcgcct gccgagcggc
     2581 ggcatcctga aggccctcgg cgtcgtcctc gtgatcgccg gcttgaagct cattctgacc
     2641 taggcgcttg cgcacccgcg caggcatgac gagattgcgg gcatggacca cgacgcttat
     2701 cccgacgact acgtccgccg catcctcaag ggcgtgaaga ccatcgcgct cgtcggggcc
     2761 tcaaacaacc cggcgcgccc gagctggatc gtcaccaagt acctgtccga gcgcggctac
     2821 gacgtcatcc cgatcaaccc ggggctcgcc ggcaaggaga tcctgggcct caaggtctat
     2881 gcatcgctcg ccgaggtgcc gcgcccgatc gacatggtcg agatcttccg caactcgcaa
     2941 gccgccggcc ccatcaccga ccaggcgctc gcgctcgatc cgccgcccaa ggtgatctgg
     3001 atgcagctct cggttcgcaa cgacgaggcc gccgcgcggg ccgaggcgca gggcgtcgag
     3061 gtcgtcatga accgctgccc caagatcgag tacggccgcc tctcgggcga gatctcctgg
     3121 cagggcatca actcgcgcat catctcgtcg aagaaggcga cgctcgccgg caagggcttc
     3181 cagaagctca ccatccaccg gccgcaatag cggcttctcg agcggaggcg ggacgatgct
     3241 gttgcgcgag gacggcgagg cggcgatcgc gatcccgcag ccgagccact cctggctctc
     3301 gggccagctc gcccgggcgt ggggcaatga gcgcttcgcc acgccctccc cgttcgagga
     3361 ggtctgcctt gccgccgagc agcacgacat cggctggctc acctgggagg ccgagcccgt
     3421 gctcgacccg gtgtccggcc ggcccaagac cttcatgcag gtcgggcccg agacgcacac
     3481 gcagctgtgg cgcgacggcg tgcggcgggc ggggatctac ggccgctacg ctgcccttct
     3541 cgtctcgctc cacgccgaca cgatctacgg gcgcttcttc cgcttcgaca aggcgccggc
     3601 cgaggaagcg cgtctggtcc gcgccttcct ggatgagcag cacgccttcc agcaggcgac
     3661 gatcgcgtcc ctgcgcgccg acccgctcac tgcctcggac gtcgaagagg aggccatcga
     3721 ccgcaacagg ctcacgatcg cggcgctcga ctggatgtcg ctccacgtgt gctggggcgt
     3781 gaacgaggac gtccgcatcc ccgaggtccc cgtcgccggc attgagcgca tcgcgatgcg
     3841 cctgcgcccc ggcgccgtgc cggaggagat cgtcgtcgat ccgtggccgt tccggccgga
     3901 gcgcctcgcc gtgcgcgccg aaggcaggcg gctgtccggg cgctacgagg acgacgcgtc
     3961 cctgcggacc gccctcggac gggcggagcc ggtcccgatc agggcgagct tacgcccggc
     4021 ttgagaaggc gcgcttcagg aacccggggt taaccgcttc tcgccatgat ccctcaacct
     4081 tgtcgagatc ttgcgttcga gcatgcgtga catcctgcgt aaccagttcg aggcgatgcg
     4141 cgagcggccg gcggagcgcc tgctcaagcc gggcatcaag gcggccgtca tcgtcgctat
     4201 cctgagcgtc gcggcccact ttgcctccga gcggtcgtac gaccgcagca cgctcgcgaa
     4261 gcttgcagcc ggcggccccg ccgccaaggc gcccgccacc acggcccggc gtccgtgacc
     4321 tcgaccttcc gcgacgagcg caacgcgcgc gcccttgcgc gcctgcgcaa ggcgctgccc
     4381 ccggtgttcc ccggctccgt tctcgcccac gcgctcgccc ggccgttcac gccgccgacg
     4441 ccgcggcttg ccgtcgactc gtactggcgc aaccacccgg tccgggccga tcggctcgcc
     4501 cgcgcccttg ccgcgaagag cggcgcccct gcgggctgga cgtggcagct cggcgcacgc
     4561 tcgccggagg gactgcccgg cggcctcagg tcgccgcccg cgccttatcg cgagaagccc
     4621 ttcgcccgcg gccccggcca ttgctgcgtc tgcggccagc ccgtgtaccg cttcggctgg
     4681 cacgtcgatg cctgcggcga cggcaagccg aaccgcaacg cgcgctggca cggctgctgc
     4741 gtcgtcgcct ggaagctctg gacggcgccg cggacctacc tgcgcccgtt gcgcaagctg
     4801 cagggccgac tctgccccgc cacgggcaag cgcctgctga aatcgggcga ggtcgaccat
     4861 cgcctggcgc tgcaccgggt ctggcgcgag cgccgcgaca ggccgtggcc ggagcttctc
     4921 gccttctggg gcacgccgaa cctgcaggtc atcaaccgcg acgcccacgc gagcaagacc
     4981 ggcctcgagg cgcgcgtgcg ggcagagtcc gcgcgagctc ccgctcccgc ggcggtggcg
     5041 agctgagggg tcgagtggtg ccgcgcagct tcaaggccgt cctcgacgag accgtcggat
     5101 tcgcacagga agccctcgtg tcgatcgagg ccggcgactt ccccgagcgc gagctccatt
     5161 acctgcgcca gcgtctcctc gatgccctcg ccctgttcga gcgcgacgcc ggcatcgagg
     5221 ccgcggtggc ggacctctat gccgccgcga ccgcactcgc catcgcgcag gcgcgcagtg
     5281 ccgggcccgg caacgtgcgc gaagagcgcg cggcccgcga cgccttcgtg cgcttccgcc
     5341 gccggatcac gggagcgctg cccaacgcgg cggcgcgtga gtcgggcatc gcgtgaccgg
     5401 cccgccgggc gcttgcctca atccggcccc gtccctaatg cttgccgtcc cctccccttc
     5461 gagtgagcga cgatgagcgc gacgcagctc ctttttcgcg acgatgccta cgcccgcgca
     5521 tgcgaggcgg gcgtgctctc ggtcacgccc gacggcgtcg tgctcgaccg caccgtcttc
     5581 tacgcccagg gcggcgggca gccgggcgac gtcggcgcgc tcgtgcgcga ggacgggacc
     5641 gaggtggcgg tgaccaacac cgtctatggc ccggaccgga cgaccatcgt gcacctcatc
     5701 tccggcgccg acgcattcca gccgggcgag cgggtgaccg cccggctcga ttgggaccgg
     5761 cgctacccgc gcatgcgggt tcacacggcc ctgcatctgc tcagcgtcgt gctgccctac
     5821 cccgtcaccg gcggggcgat cggagacggc gacgggcggc tcgacttcga catccccgag
     5881 gccggcctcg acaaggccga gattgccgag aagctgaatg cgctgatcgc ccgtgacgcc
     5941 cccgtcggcg aacgctggat caccgacgcg gagctcgacg ccaaccccgg cctcgtaaag
     6001 accatgtcgg tgaagccgcc ccgcggcgcc gggcgcgtgc gcctcgtcga gatcgagggc
     6061 atcgacctgc agccctgcgg cggcacccat gtgcgccgga ccgccgagat cggcacggtc
     6121 gtcgtcaccg acatcgagaa gaagggcaag cagaaccgcc gcgtccgcat cgccctcgcg
     6181 tagcgtgagc tggacgttcg gcgtcaagcg gccgaggcgg cgaagtccga gatgccgccg
     6241 tgggcggcgg accatttcgc gggattgtgc aggaagctct cgacctcgga caggacgccg
     6301 gggtcgaagt ggccgctcgc cttggcggcc gcgaggatgt cccaccacgt cgcgaggtga
     6361 tgcagggtga tgttgagctc ggagaagatc tcctggctct tggggaagat gtcgtagaag
     6421 aacagcacga agcagtggtc gaccccggcg ccggcctggc gcagcgcctg gcagaagttc
     6481 accttgctgc gcccgtccgt cgcgagatcc tcgacgagga gcgtgcgagc ccctgccaca
     6541 acctcgccct cgatctgagc attccgtccg aagcccttgg gcttcttccg aatatactgc
     6601 atcggaaggc cgagcttgtc ggcgatccag gccgcgaagg gaatgcccgc cgtctcgccg
     6661 ccggcgacga tgtcgatcga ctcgtagccg acgtcacgca cgatggtggc ggcggcgaaa
     6721 tccatcagcg ccgagcgcag gcgtggatag gagatgatct tgcggcagtc gacgtagacg
     6781 gggctcgccc agcccgaggt gaagatgaag ggctgtgccg cgttgaagtg gatcgccttg
     6841 atctcgagca tcatgcgcgc ggtctgctgc gcgatggcgg ccttgtcgac gggaagcgcg
     6901 aaggtgctca tgagttgctc cggtggccgc cctgcatcgc gtcaggccgc ggcccagtca
     6961 acacgctcgc cctcgaacaa acagacgatt tcgccctcgc cggccaccgc gacccgctcc
     7021 gccgtgaagg cgcgcccctg tgcgaaggtc acgcgctcct cgttcggggg caggccgtag
     7081 aaggcggggc cgttgagaga cgcgaaggct tcgaagcgat cgagggcgtt ctcctcggcg
     7141 aagaccctga ggtaagcctg gatggcgact ggcgcgctga acacgccggc acagccgcag
     7201 tccgcctcct tgaggtgccg cagatgcggc gccgtgtcgg tgccgaggaa gaagttggcc
     7261 tcgccgcctg ttgccgcggc gcgcagcgca aggcgatggc gctcacgctt cagcaccggc
     7321 aggcagtaca cgtgcgggcg caggccgccc tggaacaggg cgtttcggtt gtagaggagg
     7381 tgctgcggcg tcagcgtcgc gcccatgcgg gttgcgtgcg cgcgcaccac ctcgacgcct
     7441 tcagccgtcg tgacgtgctc catgacgacc ttgaggcgcg gaaaccgctc cagcgtcggc
     7501 acgagcacct cgtccacaaa gcctttctcg cggtcgaaga tgtcgacctc gggccgcgtg
     7561 atctcgccgt gggtgagcag cgggatgccg tgctcctcca tcgcctccag caccggatag
     7621 atgcgcgcga tgtcgctgac gccgtgggcg gagttggtgg tggcgtgggc cggatagagc
     7681 ttggcggccg tgaagacgcc gtcccggtgg ccggccacga gatcgcgcgg gtcggtgtgg
     7741 tcggtgaggt agcaggtcat cagcggcgtg aagccggcgc ctgccgggac cgccgccatg
     7801 atccgctcgc ggtaggctgc cgccatggcg gccgtggtca ccggcggcgt gaggttcggc
     7861 atgacgatcg cccggccgaa cgcgcgcgcc gtgtagggca ccacctcgcg cagtatcgcg
     7921 ccgtcgcgga agtgcacgtg ccagtcgtca gggcggcgga tggtgatggt gcgcatggcg
     7981 gctatcgggt ttgacgggct tcggagtgtg aggcccggaa ctcgcgcgcc tcagtggcgg
     8041 ccttcgcaac cgaggtgcgc agggcgttgt cggtgaaacc cgacgcaagg gcgctgcgcg
     8101 acgccgtcgg gatcacccgg cggcgcgccg ccgccatggt gccttcgagg tcggcgaacg
     8161 tcgcgccctg ggcgccgatg ccgggagtga gcatgagcgc cccgtcgagg gcggcgacca
     8221 ctggatcgag gatgggggcg gcgagcgtcg cgcccatgac ggcgccggcg atcggcgcgc
     8281 cggcccgggc gttgaactcg gccatctcgg ccgcgagacc ctcggcgacg gtgcgg
//
LOCUS       DASQWN010000373         3017 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1354682, whole genome shotgun sequence.
ACCESSION   DASQWN010000373 DASQWN010000000
VERSION     DASQWN010000373.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 3017)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3017)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3017
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1354682"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1362
                     /locus_tag="VE686_07135"
     CDS             <1..1362
                     /locus_tag="VE686_07135"
                     /inference="COORDINATES: protein motif:HMM:NF019552.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016829 - lyase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="heparinase II/III family protein"
                     /protein_id="HYY84259.1"
                     /translation="RSLVADFLKRGRREPPVARETHVVARRLVAFLAQSPLLLEGADH
                     EFYRSFQRAIGRAVRDLERDIPRPLRPERRLSAAVALCYAGLCCDGFDPILRRGTRLL
                     VRELERQILPDGGHIGRNPRVVLELLLDLLPLRQTFASRGIEAPEALMQAIDRMLPML
                     RLLRHGDGTLSHFNGMGRTAADHLATLLMYDEARAQPLMHAPHSGYERLAAGDTLMVA
                     DVGAAPATRFSAEAHAGCLAFELSSGGSRIVVNCGASTGARNGLATAGRATAAHSTVT
                     VADVSSCRFVGVQGWWGERALGAWLARRLGSAILTGPVSVPAERGERGGIETLTASHD
                     GYRDRFGLVHERRWRMGPGGEWLDGEDRFQRESDGPDDAVIRFHLHPGVSAAMAEGDT
                     VRLRLPNGEIWHFAASSDDASLTESVFFAATDGMRRTEQIVIPLRMSETPLVRWRFER
                     MPA"
     gene            1420..3012
                     /gene="purH"
                     /locus_tag="VE686_07140"
     CDS             1420..3012
                     /gene="purH"
                     /locus_tag="VE686_07140"
                     /EC_number="2.1.2.3"
                     /EC_number="3.5.4.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012752887.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0003937 - IMP cyclohydrolase activity
                     [Evidence IEA];
                     GO_function: GO:0004643 -
                     phosphoribosylaminoimidazolecarboxamide formyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006164 - purine nucleotide biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0006189 - 'de novo' IMP biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     phosphoribosylaminoimidazolecarboxamide
                     formyltransferase/IMP cyclohydrolase"
                     /protein_id="HYY84260.1"
                     /translation="MPSDPKRITRALLSVSDKTGLVDFARALKERGVALVSTGGTRKA
                     LADAGLPVDDVSDLTGFPEMMDGRVKTLHPAVHGGLLAVRGNPEHQAAMLAHGIPEID
                     LLVVNLYPFEATVAADKPYDDCVENIDIGGPAMIRAAAKNHHDVAVVVDVADYATVLA
                     DLDAHGGAVTLELRRRLAQKAYARTAAYDAAISNWLAGAIGEPMPAFRAVGGRLVEAM
                     RYGENPHQSAGFYRTADVRPGVATARQVQGKQLSYNNINDTDAAYECVAEFDAARTAA
                     VAIIKHANPCGVAEAESLGEAYERALRCDPVSAFGGIVALNRTLDADAARRIVEIFTE
                     VIIAPDATEEAIAIVGAKKNLRLLLAGGLPDPRAPGLSLRTVAGGFLAQGRDNAVVDD
                     MELKVVTRREPTNRELSDLKFAFRVAKHVKSNAIVYAREGATVGIGAGQMSRVDSSRI
                     AAWKAAEAAKAAGSPESLAKGSVVASDAFFPFADGLLAAAEAGATAVIQPGGSMRDDE
                     VVRAADEAGLAMVFTGHRHFRH"
BASE COUNT          424 a         1118 c         1034 g          441 t
ORIGIN      
        1 cgctcgctcg tggccgattt cctcaagcgc gggcgccgcg agcctccggt cgcgcgcgag
       61 acgcacgtcg tcgcccggag gctcgtcgcc ttcctggcgc agtcgcccct cctgcttgag
      121 ggagccgacc acgagttcta ccgcagcttc cagcgcgcta tcgggcgcgc cgtgcgcgac
      181 ctggaacgcg acatcccgcg cccgctgcgg cccgagcggc ggctctccgc cgccgtggcg
      241 ttgtgctacg cgggcctgtg ctgcgacggc ttcgatccga tcctgcggcg cggaacccgg
      301 ctcctcgtcc gcgagctcga gcggcagatc ctgcccgacg gcggccacat cggccgcaat
      361 ccacgggtgg tcctcgagct cctgctcgat ctccttcccc tacgccagac cttcgcgagc
      421 cgcggcatcg aggcgcccga ggccctcatg caggcgatcg accgcatgct ccccatgctg
      481 cggctcctgc gccatggcga cgggacgctg tcgcatttca acggcatggg gaggaccgcg
      541 gccgaccatc tcgccacact cctcatgtac gatgaggccc gggcgcagcc actcatgcat
      601 gcgccgcatt ccggctacga gcgcctcgcc gccggcgaca ccctcatggt cgccgacgtc
      661 ggcgccgcgc ccgcaacccg cttctccgcc gaggcgcacg cgggctgcct cgctttcgag
      721 ctgtcgagcg gcggctcgcg catagtcgtc aactgcggcg cctccaccgg tgcaaggaac
      781 gggctcgcga cggccggacg ggccacggcg gcccactcga cggtgacggt cgcggacgtg
      841 tcgtcgtgcc gcttcgtcgg cgtgcagggc tggtggggcg agcgcgccct cggcgcctgg
      901 ctcgcgcgcc gtctcgggtc ggcgatcctg accggtcctg tcagcgtgcc ggcggagcgc
      961 ggcgagcgcg gggggatcga gacgctcacg gcaagccacg acgggtatcg cgaccgcttc
     1021 ggcctcgtgc acgagcgccg ctggcgtatg ggtcccggag gcgaatggct cgacggcgag
     1081 gacaggttcc agcgcgagag cgacggcccc gacgacgctg tcattcgctt ccacctccat
     1141 cccggcgtct cggccgcgat ggcggaggga gacacggtgc gcctgcggct cccgaacggc
     1201 gagatctggc attttgctgc aagcagcgac gacgcttcgc tcacggagag cgtgttcttc
     1261 gccgcgacgg acggcatgcg ccgcacggag cagatcgtca tacccttgcg catgagcgag
     1321 acgcccctcg tgcgctggcg cttcgagcgc atgccggctt agttccgccg cctcggcaat
     1381 cgtggtatcg cgcgcccgcc gtcctgaccg gagcaccgca tgccgagcga ccccaagcgc
     1441 atcacccgcg cgctcttgtc cgtctccgac aagacggggc tcgtcgactt cgcccgcgcc
     1501 ctgaaagagc gcggcgtcgc gctggtatcg acgggcggca cccgcaaggc cctcgcggat
     1561 gctggattgc cggtcgacga cgtgtccgac ctcaccgggt ttcccgagat gatggacggg
     1621 cgggtcaaga ccctccatcc cgccgtgcac ggtgggctgc tcgcggtgcg cggcaacccg
     1681 gagcaccagg cggcgatgct ggcccacggc attcccgaga tcgatctcct cgtcgtgaac
     1741 ctctacccgt tcgaggcgac ggtcgcggcg gataaaccgt acgacgactg cgtcgagaac
     1801 atcgacatcg gcgggcccgc gatgatccgc gccgcggcca agaaccatca cgatgtcgcc
     1861 gtcgtcgtcg atgtcgccga ttacgccacc gtcctcgccg acctcgacgc gcatgggggc
     1921 gcggtgacgc tggagcttcg ccgacgcctc gctcagaagg cctacgcgcg tacggccgcc
     1981 tacgacgccg ccatctcgaa ctggcttgcc ggcgccatcg gcgagcccat gccggcgttc
     2041 agggccgtcg gcggccggct cgtcgaggcc atgcgctacg gcgagaaccc gcaccagagc
     2101 gccggtttct atcgcacggc cgacgtgcgg ccgggcgtcg cgacggcgcg gcaggtgcag
     2161 gggaagcagc tgtcgtacaa caacatcaac gacacggacg cggcgtacga gtgcgtggcg
     2221 gagttcgatg cggcgcggac cgcggccgtg gcgatcatca agcacgccaa tccgtgcggc
     2281 gtcgcggagg cggagagcct cggcgaggcc tacgagaggg ccctgcgctg cgatccggtc
     2341 tcggccttcg gcggcatcgt ggcgctcaac cgcacgctcg acgccgacgc ggcccgccgg
     2401 atcgtcgaga tcttcaccga ggtcatcatc gcccccgacg cgaccgaaga ggccatcgcc
     2461 atcgtcggcg cgaagaagaa cctgcgcctc ctcctcgccg gcggcctccc cgacccgcgc
     2521 gcgccggggc tctccctgcg caccgtcgcc ggaggcttcc tggcgcaagg gcgcgacaac
     2581 gccgtcgtcg acgatatgga gctgaaggtc gtgacgcgcc gcgagcccac gaaccgcgag
     2641 ctgtcggacc tgaagttcgc cttccgggtt gccaagcacg tcaagtcgaa cgctattgtc
     2701 tacgcccgcg agggtgcgac ggtcggcatt ggcgccggtc agatgagccg ggtcgattcc
     2761 tcccgcatcg ccgcctggaa ggccgccgag gccgcgaagg cggcgggctc gcccgagagc
     2821 ctcgccaagg gctcggtcgt cgcctccgac gccttcttcc ccttcgctga cgggctcctg
     2881 gcggcggcgg aagcgggtgc cacggcggtg atccagccgg gcggctccat gcgcgacgac
     2941 gaggtcgtcc gcgctgccga cgaggccggc ctcgccatgg tcttcaccgg ccaccgccat
     3001 ttccggcact gacgcaa
//
LOCUS       DASQWN010000374         2043 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_759785, whole genome shotgun sequence.
ACCESSION   DASQWN010000374 DASQWN010000000
VERSION     DASQWN010000374.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2043)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2043)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2043
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_759785"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(63..1322)
                     /locus_tag="VE686_07145"
     CDS             complement(63..1322)
                     /locus_tag="VE686_07145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006926030.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HYY84261.1"
                     /translation="MILAHKIALDPTQAQAEYFARACGVARFAWNWALARWRQEYALW
                     REYRCGPKPSEAALRRELNALKAGAFPWMREVTKNAPQQAIKNLGAAFKNFFEGRARY
                     PTFKKKGRANDGFRADPGADKDHPNAVEVDGRRVKLPVVGWVRMREAPRFQGRIKSAT
                     VSRVADRWFVSLSVEVDHAPPARENQAVGGVDLGVKTLATLSDGTALAGPMALRRNLK
                     KLRRTSRALSRKAKGSANRGKAAARLARSHARVANVRRDALHKATTAIVRRFAVIGIE
                     DLNLRGMMANGRLARAIADIGAFEFRRQLDYKAAMHGVRIVVAGRWFPSSRLCSDCGH
                     IHGGLTLADRGWACDGCGVVHDRDLNAAINLRSVAESSLAAASPSGRPGGSVTACGAE
                     GSGLGLAAKVKPAAMKQEPTLGTVVHG"
     gene            complement(1319..1903)
                     /locus_tag="VE686_07150"
     CDS             complement(1319..1903)
                     /locus_tag="VE686_07150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003414146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IS607 family transposase"
                     /protein_id="HYY84262.1"
                     /translation="MTLSAWAKANGLAYKTAWRMWRDGRLPIPAEQLPTGTVIVHPPP
                     APSAEAVALYARVSSADQNADLERQLGRLADYASRERLTVIRSVSEIGSGLDGDRAKV
                     MRRLLADPAVRTIVVEHRDRLARFGAEYIEAALAAGGRKLVVVDRAEMKDDLAQDMVD
                     VVTSFCARLYGRRAAKNRAEKALAAAAAAEGGAA"
BASE COUNT          266 a          759 c          705 g          313 t
ORIGIN      
        1 gagcatctcc gcggtgatga agcccgccac atcggtcatc gatgccatag tgcaccgttc
       61 tcctaaccat ggacaactgt gccaagggta ggttcctgct tcatcgcggc tggtttcacc
      121 ttggccgcga ggccaaggcc agagccttcc gctccacagg ccgtcaccga gccaccgggg
      181 cgtcccgacg ggctggcagc cgccagcgaa ctctcggcca ctgatctcag gttgatcgcc
      241 gcgttgaggt cgcggtcgtg gaccacgccg cagccgtcgc acgcccaccc ccggtccgcc
      301 agcgtcagcc cgccgtggat gtgcccgcaa tcggagcaca gccggctgga cgggaaccag
      361 cgccccgcga ccacgatgcg cacgccgtgc atcgccgcct tgtagtccag ctgccgccga
      421 aactcgaagg cgccgatgtc ggcgatggct cgggcgaggc ggccgttcgc catcatgccg
      481 cgcaggttca ggtcctcgat gccgatgacg gcgaacctgc gcacgatggc ggtggtcgcc
      541 ttgtgcagcg cgtcccgccg gacgttggcg acgcgcgcgt gcgaccgggc cagcctcgcc
      601 gccgccttgc cgcggttggc cgagcccttg gccttgcggc tcagggcgcg gctcgtccgg
      661 cggagcttct tcaggttcct gcgcagcgcc atcggcccgg cgagggcggt gccgtcgctc
      721 agggttgcga gagtcttcac gccgagatcg acgccgccga ccgcttggtt ttcgcgggcg
      781 ggcggggcgt ggtcgacctc gacgctcagg ctgacgaacc agcgatccgc cacgcgcgac
      841 acggtggcgg acttgatccg gccctggaag cgcggggcct cgcgcatccg gacccagccg
      901 acgaccggca gcttcacgcg cctgccgtcc acctcgaccg cgttcggatg gtccttgtcc
      961 gcgccggggt cggcgcggaa gccgtcgttc gccctcccct tcttcttgaa ggttggatac
     1021 cgcgcgcggc cctcgaagaa gttcttgaac gccgcgccga ggttcttgat cgcctgctgc
     1081 ggggcgttct tcgtcacctc ccgcatccac gggaaggcgc ctgccttcag ggcgttcagc
     1141 tcacggcgca gggccgcctc ggagggcttc ggcccgcagc ggtactcgcg ccagagcgcg
     1201 tactcctgcc gccaccgcgc cagcgcccag ttccacgcga accgcgccac gccgcaggcg
     1261 cgggcgaagt actccgcctg cgcctgcgtc gggtcgagcg cgatcttgtg cgcgaggatc
     1321 acgcggcgcc gccctcggcg gcggcggcgg cggccaacgc cttctcggcc cggttcttcg
     1381 cggcgcggcg gccgtacaga cgggcgcaga acgacgtgac gacgtccacc atgtcctgcg
     1441 cgaggtcgtc cttcatctcg gcccgatcca ccacgaccag cttccgtccg cccgccgcca
     1501 gggccgcctc gatgtattcg gcgccgaacc gcgcgaggcg gtcgcggtgc tcgacgacga
     1561 tggtccgcac cgccggatcg gccagcagcc gccgcatgac cttggcgcga tcgccgtcca
     1621 gcccggagcc gatctcggac acggaccgga tgaccgtcag ccgctcgcgc gaggcgtagt
     1681 ccgcgagccg tccgagctgg cgctctaggt cggcgttctg gtccgcgctc gacacgcggg
     1741 cgtagagggc gacggcctcg gcggaggggg ccggcggcgg gtggacgatg accgtgccgg
     1801 tcgggagctg ctcggcgggg atcggtagcc gcccgtcgcg ccacatgcgc cacgcggtct
     1861 tgtaggccaa tccgttcgcc ttcgcccacg ccgagagcgt catgcgcccc gcatatcacg
     1921 gcatacttgg gcacaaaagg gtatgcgtgg tggggcagct accaaccctc tgcgcggacg
     1981 cttcctcggc tcgtgccggc ccttcggggt ggcgcagccg tctccaccgg gcgccgccgc
     2041 gcc
//
LOCUS       DASQWN010000375         2633 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_760889, whole genome shotgun sequence.
ACCESSION   DASQWN010000375 DASQWN010000000
VERSION     DASQWN010000375.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2633)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2633)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2633
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_760889"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..164)
                     /locus_tag="VE686_07155"
     CDS             complement(<1..164)
                     /locus_tag="VE686_07155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019904385.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HYY84263.1"
                     /translation="MSASSFAQGIPVRVGVIPIVGAAPIFVANGQGWTKADGLDLKFT
                     TFESGPNMIQA"
     gene            325..1347
                     /locus_tag="VE686_07160"
     CDS             325..1347
                     /locus_tag="VE686_07160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015931383.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HYY84264.1"
                     /translation="MSTRRTFIKALGGLALFNPAVTHAEGPTTPVRIGYVPVIGASAL
                     FVLEGAGWAKEAGLDIRTTKFDSGPNAIQALASGTLDVLAIGVAPVAVARAKGIDVKV
                     VAAGATGGSAFVASPALADAFTPGATPAQAFAAFRARHGRPAKLATLPPGGVPTVALH
                     HWLSKVAKVDNAEVTITQMGIEAVQQALLAGAVDGGTALEPSVTLVMERNPRLKRVVT
                     APEMFPDIPGVVFAVTAAFERANPKAVEALVRLIVRATEMLKANPAQAAPYVQAILGG
                     GLVETATIAKAIASPAVSYVADPRTIVQATEAMLAFQVELGDFPAAPPTAGLFDPAYY
                     LRVAGQ"
     gene            1474..1692
                     /locus_tag="VE686_07165"
     CDS             1474..1692
                     /locus_tag="VE686_07165"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY84265.1"
                     /translation="MDVDALDYLMLVYGAHDALAGDADAGEATEALRRVAADHPLVAA
                     LDGKARRSAIIADLLHRSAAREIVLPAT"
     gene            complement(1696..2226)
                     /locus_tag="VE686_07170"
     CDS             complement(1696..2226)
                     /locus_tag="VE686_07170"
                     /inference="COORDINATES: protein motif:HMM:NF014471.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015109 - chromate transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0015703 - chromate transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="chromate transporter"
                     /protein_id="HYY84266.1"
                     /translation="MNDQDVLAELGLRFAIISLMAIGGANAILPEMHRMVVDQHGWMS
                     SETFANLYALAQAAPGPNIMVVTLIGWHVAGIPGALVTTAAITVPPSILAYAASQARS
                     RWNRLPWYKSFERAVAPLTVGLVLASAGLLTLSTMSGPVSLGITASVAAFALFTRANP
                     LIPLAAAAVLGLLGVV"
     gene            complement(2223..>2633)
                     /locus_tag="VE686_07175"
     CDS             complement(2223..>2633)
                     /locus_tag="VE686_07175"
                     /inference="COORDINATES: protein motif:HMM:NF014471.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015109 - chromate transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0015703 - chromate transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="chromate transporter"
                     /protein_id="HYY84267.1"
                     /translation="EEFVNLLSLCQFLPGGNVMNLAVCVGARFRGALGAVTALTGLMI
                     MPLIIVMCLATLYAEFSTLPAAQARFRGVASAAAGLVLATGIKMALPLRRNPRALVFV
                     GLTIVAVALLKIPLVWVILLLLPVSFAAAVVLRR"
BASE COUNT          437 a          921 c          919 g          356 t
ORIGIN      
        1 gcctggatca tgttcggccc ggactcgaag gtcgtgaact tgagatcgag gccgtcggcc
       61 ttggtccagc cctggccgtt ggcgacgaag atcggcgccg cgccgacgat cgggatcacg
      121 ccgacccgca ccgggatccc ctgcgcgaag gacgaagcgg acatgaggat cgcggtcgcg
      181 gcagccgcga cggcggtgac gatggggcgg aacatgggga cctcgtggtt gagggaggct
      241 cgtattgtac atttcgcggc gcgtctagta acatatgcac atggccgcca tgtgaatatg
      301 agcgcggctg gttcaggagc gcagatgtcg acccggcgca cgttcatcaa ggcccttggg
      361 ggcctcgccc tgttcaaccc tgccgtgacg cacgccgaag ggccgacgac cccggtccgt
      421 atcggctacg tcccggtgat cggcgcgagc gccctgttcg tgctcgaagg cgcggggtgg
      481 gcgaaggagg ccgggctcga catccggacg acgaagttcg actcggggcc gaacgccatc
      541 caggcgctcg cctcgggaac cctcgacgtg ctcgccatcg gcgtcgcgcc cgtcgccgtc
      601 gcccgcgcga aaggcatcga cgtcaaggtc gtggcagcgg gcgcgaccgg cggctcggcc
      661 ttcgtggcgt cgccggcgct ggcagacgcg ttcacgccag gcgccacccc ggcgcaggcc
      721 ttcgccgcct ttcgggcgcg ccacggccgg ccggccaagc tcgcgaccct gccccccggg
      781 ggcgtaccca ccgtcgcgct gcatcattgg ctgtcgaagg tggcgaaggt cgacaacgcc
      841 gaggtgacca tcacgcaaat gggcatcgag gcggtccagc aggcgctgct cgcgggcgcc
      901 gtcgatggcg gcacggcgct cgagccatcc gtcaccctgg tgatggagcg caacccgcgc
      961 ctcaagcgcg tcgtgaccgc gcccgagatg tttccggaca ttccaggcgt cgtcttcgcg
     1021 gtcacggccg ccttcgagcg cgcgaaccca aaagccgtgg aggcactggt gaggctcatc
     1081 gtgcgcgcga cggagatgct caaggcgaac cccgcgcagg cagcccccta cgtccaggcg
     1141 atcctcggcg gcgggctcgt cgagacggcg accatcgcca aggcgatcgc ctcgccggcc
     1201 gtgtcctacg tcgccgatcc gcgcaccatc gtgcaagcga cggaggccat gctcgccttc
     1261 caggtcgagc tcggcgactt cccggccgcg ccgccgacgg ccggcctgtt cgacccggcc
     1321 tactacctcc gcgtcgctgg tcagtgagcc gcgccggaca ggcttaacgg aagctatcca
     1381 cctcggagca agtttcgaca atcggatcca ccggaccgca agcggtcggc tgctagggat
     1441 tccctcccca gggcggcccg gagtggaccc gatatggacg tggacgcgct cgactacctc
     1501 atgctggtct acggtgctca cgacgcgctc gccggcgacg cagacgcggg ggaggcaacc
     1561 gaggccctgc gccgcgtggc cgccgaccat ccactcgtcg ctgccctcga cggcaaggcg
     1621 cgccgcagcg cgatcatcgc cgatctcctg caccgcagcg ccgcgcgcga gatcgtgctt
     1681 cccgcgacct aaccctcaga ccacgccgag caatcccagc acggccgctg ccgcgagcgg
     1741 gatgagcggg ttcgcccgcg tgaacagtgc gaaggccgcg acggaggccg tgatgccgag
     1801 gctcaccggt cccgacatgg tggacaaggt gagcagcccg gcgcttgcca gaacgagacc
     1861 caccgtcagc ggcgccaccg cccgctcgaa gctcttgtac cagggcagcc ggttccagcg
     1921 cgaccgcgcc tgcgacgccg cgtaagcgag gatcgagggc ggcaccgtga tcgccgccgt
     1981 ggtgacgagg gcgcccggga tgcccgccac gtgccaaccg atgagggtca ccaccatgat
     2041 gttcgggccg ggcgccgcct gcgccagcgc gtagaggttc gcaaaggtct cgctcgacat
     2101 ccagccgtgc tggtcgacga ccatgcggtg catctcgggc aggatcgcgt tcgccccgcc
     2161 gatcgccatg agcgagatga tggcgaagcg caggccgagc tcggcaagga cgtcctggtc
     2221 gttcatcgcc gcagcaccac ggctgccgcg aagctcactg gaagcaggag gaggatgacc
     2281 cacacgagcg ggatcttgag gagtgccacg gccacgatgg tgagccccac gaacacgagc
     2341 gcccgcggat tgcggcgaag ggggagcgcc atcttgatcc cggtcgccag caccaggccc
     2401 gcggccgccg acgccacgcc gcggaaccgc gcctgggcgg cgggcagggt gctaaactcg
     2461 gcgtagagtg tcgcgagaca catgacgatg atgagtggca tgatcatgag gccggtcagc
     2521 gccgtcaccg ccccgagcgc gccgcgaaag cgcgcgccga cgcagacggc gaggttcatg
     2581 acgttgccgc cgggaaggaa ctggcacagg gagaggaggt tcacgaactc ctc
//
LOCUS       DASQWN010000376         3458 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_925817, whole genome shotgun sequence.
ACCESSION   DASQWN010000376 DASQWN010000000
VERSION     DASQWN010000376.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 3458)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3458)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3458
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_925817"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(104..325)
                     /locus_tag="VE686_07180"
     CDS             complement(104..325)
                     /locus_tag="VE686_07180"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY84268.1"
                     /translation="MTLSRRSLLTGFILACCAPAAVAAPLPVGASVEIAHENPLIETV
                     RRRRRRRRPRRRRHGRRGWRRPTMNDGWY"
     gene            422..1378
                     /locus_tag="VE686_07185"
     CDS             422..1378
                     /locus_tag="VE686_07185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009491503.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HYY84269.1"
                     /translation="MTEPKAFASTGDLTEKKVSFSEIGPGLFAYTAQGDPNSGIIVGD
                     DGCIVVDAQATPAMARDVVARVAQVTDKPIKYVVLSHYHAVRVLGASAYDAQGIVASD
                     ETYRLIQERGQQDWDSEYGRFPRLFRDADSIPGLTWPTLTFDTAMTVFLGKRRIDIMA
                     IGAGHTSGDIVAFVPDAQVMFSGDLVEYHSACYCGDAHLREWPQTLDTIREFDPRALV
                     PGRGDALVGQATVREAIAMTRDFVQTLYGAAEMSVAKGRSLQETFQAAREVMDPKFSS
                     FAIYEHCQPFNVSRAYDEASGIDDPVIWTAERDRDMWAALQG"
     gene            1380..2966
                     /locus_tag="VE686_07190"
     CDS             1380..2966
                     /locus_tag="VE686_07190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011662356.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HYY84270.1"
                     /translation="MSASFPYCRSPDQDRQEPMHHPVVVVGAGPVGLCAAIDLAQRGV
                     PVVLLDDGDCIGEGSRGICYAKRTLEILDRLGIAAACLEKGVTWKVGKVFFRDELLYA
                     FDLLPEDGHKMPAFINLQQYYLEHFLVQRAAELPNLEVRWGNRVAGLEPRNDGARLTV
                     DTPDGPYRVDASWVVAADGARSTLRRLLDLPFVGEVFEERFLIADVKMLGPFPPERWF
                     WFEPPFHAGHSALLHKQPDHVWRIDLQLGADADPVAEQAPERVIPRLRQMLGHDDFSL
                     EWVSVYRFQCRRLERFVHGRVVFVGDAAHQVSPFGARGANSGIQDAENLAWKLALVLN
                     GTAPESLIETYEIERSAAADENIGHSTRSTDFIAPRSAQELRFRDAVLSLAREAPFAK
                     RMVNSGRLSLPSTYESRLSTADRDTWGGTARLGAPLPDAPLVDGHGSATWLLDAIAGD
                     EVLLCTEADGLEPEMPGLKRIVIGRDLIDRDGHFARRFDATPGAAYLARPDQHLAARW
                     RAPGTASLTAAARRIHGIGT"
     gene            2977..3195
                     /locus_tag="VE686_07195"
     CDS             2977..3195
                     /locus_tag="VE686_07195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009493012.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2783 domain-containing protein"
                     /protein_id="HYY84271.1"
                     /translation="MAELETEGRLPDPDAAYRSLIEAHRGLPDEDSAALNTRLVLILA
                     NHIGDAQVLAAAIALAKKALSQHAARQT"
     gene            complement(3192..>3458)
                     /locus_tag="VE686_07200"
     CDS             complement(3192..>3458)
                     /locus_tag="VE686_07200"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY84272.1"
                     /translation="LVGHESVARGPGEPVTVHKMNGRRRAYTVGGRGAATTSVLSVAF
                     NDRCDLVVATAAMGSETGVPQERTVLDFLNGDVVLRWAERTLGL"
BASE COUNT          532 a         1241 c         1155 g          530 t
ORIGIN      
        1 gtgctgtcgc ccatcatcgc cgccgccgcg atggcgctgt cgtcagtgag cgtcatcgct
       61 aatgccggac gcctgcgcgg catccgcctg tgaggagggt cgctcagtac cagccgtcgt
      121 tcatggtcgg gcggcgccat ccgcgccgtc catgacgccg ccggcgggga cgccgtcgac
      181 gacggcgtcg gcgcacggtc tcgatcagcg ggttctcgtg cgcgatctcg acggacgcac
      241 cgaccggaag gggagcggca acggccgccg gcgcgcagca ggcgagaatg aagccggtga
      301 ggagcgagcg gcggctgagg gtcatcgttc gcgccaacgc gcggcggagc ttagctgttc
      361 cgcccgccct tgatcccatc cctgtcccgg acgacagtcc ggtgactggg agagccggac
      421 gatgacagag ccgaaagcct tcgcctcaac cggcgacctg acggaaaaga aggtgtcgtt
      481 ctcggagatc gggccggggc tcttcgccta cacggcacag ggcgatccga actccggcat
      541 catcgtcggc gacgacggct gcatcgtcgt cgacgcacag gcgacgcccg ccatggcgcg
      601 cgacgtcgtt gcccgggtgg cgcaagtcac cgacaagccg atcaaatacg tggtgctgtc
      661 gcactaccac gccgtgcggg tgctgggcgc ctcggcgtac gacgcgcagg gcatcgttgc
      721 ttcggacgag acctaccggc tcatccagga gcgggggcag caggactggg attccgagta
      781 cggccgcttc ccgcgcctgt tccgcgacgc cgattccatc ccggggctca cctggccgac
      841 gctgaccttc gacaccgcta tgacggtgtt cctgggaaag cgccgcatcg acatcatggc
      901 aatcggggcc ggccacacgt cgggcgacat cgtcgccttc gtcccggatg cgcaggtcat
      961 gttctcgggt gacctcgtcg agtaccactc ggcatgctac tgcggcgacg cgcacctgcg
     1021 cgagtggccc cagaccctcg acacgatccg cgagttcgac ccgcgtgcgc tggtgccggg
     1081 acgcggcgac gccctcgtcg gccaggcgac cgttcgcgag gcgatcgcca tgacgcgcga
     1141 cttcgtgcag acgctttatg gcgccgccga gatgtcggtc gcgaagggcc gctcgcttca
     1201 ggagacgttc caggccgccc gcgaggtgat ggaccccaaa ttctcgtcgt tcgccatcta
     1261 cgagcactgt cagcccttca acgtctctcg cgcctatgac gaggccagcg gcatcgacga
     1321 cccggttatc tggaccgccg agcgcgaccg ggacatgtgg gccgcactac agggctgaca
     1381 tgagcgcgtc cttcccctac tgccgatccc ccgaccagga ccggcaggag ccgatgcacc
     1441 atccggtggt ggtcgtcggg gccgggcctg tcggcctgtg cgccgcgatc gatctggccc
     1501 agcgcggcgt gccggtagtc ctcctcgacg acggcgactg catcggcgag gggtcgcgcg
     1561 gcatctgcta cgcgaagcgc acgctcgaaa tccttgaccg gctcggcatc gcggcggcgt
     1621 gcctcgagaa gggcgtgacc tggaaggtcg gcaaggtctt cttccgggac gagctcctgt
     1681 acgccttcga ccttctgccc gaggacgggc acaagatgcc ggccttcatc aacctgcagc
     1741 aatactacct cgagcatttc ctcgtgcagc gcgcggccga actgcctaat ctcgaggttc
     1801 gctggggcaa cagggtggct gggctagagc cgcgcaacga cggcgcgcgg ctcaccgtcg
     1861 acacgccgga cggcccgtac cgagtggatg catcctgggt cgtcgcggcg gacggcgcac
     1921 gctcgaccct gcggcggctc cttgatcttc ctttcgtcgg cgaggtgttc gaggagcgct
     1981 tcctcattgc cgacgtgaag atgctcgggc cgttcccgcc agagcgctgg ttctggttcg
     2041 agccgccgtt ccacgccggc cattcggcgc tgctgcacaa gcagcccgac catgtctggc
     2101 gcatcgacct gcagctcgga gcggacgccg acccggtcgc ggagcaagcg ccggagcggg
     2161 tgatccctcg cctgaggcag atgctcggac acgacgattt ctcgctcgaa tgggtttcgg
     2221 tctaccggtt ccagtgccgc cgcctcgagc gcttcgtgca cgggcgcgtg gtcttcgtcg
     2281 gcgacgccgc ccatcaggtt tcgcccttcg gagcgcgagg cgcgaactca ggtatccagg
     2341 acgctgagaa cctcgcctgg aagctcgccc tcgttctcaa cggtaccgca cccgagagcc
     2401 tcatcgagac ctacgagatc gagcgttccg cggcagcgga cgagaacatc ggccattcga
     2461 cacgctcgac cgacttcatc gcgccgcgct cggcgcagga gctgcggttt cgcgacgccg
     2521 tgctgagcct cgctcgcgag gcgccgttcg ccaagcgcat ggtgaactcc ggcaggctct
     2581 ccctgccctc gacatacgag agccggctgt ctacggccga ccgcgacacg tggggcggca
     2641 cggcgcggct cggcgccccc cttcccgatg cgccgctcgt cgacggccac gggagtgcga
     2701 cctggctcct cgacgccatc gccggcgatg aggtgcttct gtgcacggaa gcggacggcc
     2761 tcgagcccga gatgccgggg ctgaagcgca tcgtcatcgg ccgcgacctc atcgaccggg
     2821 acggccactt cgcccgccgc ttcgacgcga cccccggcgc cgcctacctc gcgcgccccg
     2881 accagcacct cgcggcgcgg tggcgggctc ccggcacggc gtcgctcacc gccgcggcgc
     2941 ggcgcataca cggcattggg acctgaggag cggcgcatgg ccgaactcga gaccgaaggg
     3001 cgcctgcccg atccggacgc cgcctaccgc tccctcatcg aggcgcaccg cgggcttccg
     3061 gacgaggaca gcgcggcgct caacacgcgc ctcgtgctca tcctcgccaa ccacatcggc
     3121 gacgcccaag tcctcgccgc cgcgatcgcg ctggccaaga aggcgctctc acaacacgca
     3181 gcgaggcaaa cctagagccc cagcgtccgc tcggcccagc gcaggaccac gtcgccgttg
     3241 aggaagtcga gcactgtgcg ctcctggggg acgcctgtct cgctgcccat cgccgccgtc
     3301 gcgacgacga ggtcgcaacg gtcgttgaaa gcaaccgaaa ggactgaggt cgtagccgcg
     3361 ccgcggcccc ccaccgtgta ggcccggcgg cgcccgttca tcttgtgcac cgtgaccggc
     3421 tcgcccgggc cacgagcgac gctctcgtgg ccgacgag
//
LOCUS       DASQWN010000377         2351 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_761181, whole genome shotgun sequence.
ACCESSION   DASQWN010000377 DASQWN010000000
VERSION     DASQWN010000377.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2351)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2351)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2351
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_761181"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(65..913)
                     /gene="rlmJ"
                     /locus_tag="VE686_07205"
     CDS             complement(65..913)
                     /gene="rlmJ"
                     /locus_tag="VE686_07205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018045904.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008649 - rRNA methyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0070475 - rRNA base methylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (adenine(2030)-N(6))-methyltransferase
                     RlmJ"
                     /protein_id="HYY84273.1"
                     /translation="MNYRHAYHAGNFADVMKHVFLTRILVHLARKEAPFRVVDTHSGV
                     GLYDLEAEAAGKTAEWRAGVARMEAPFSPEVEDLLAPYRGVLEGVRARHGASAYPGSP
                     AIVRELIRRQDRGVFVELHPADAKALSSRFNAVSNLKVMRLDGWTALHALIPPNERRG
                     LVLVDPPYEEPGELDRLASELLKAARKWPTGIYAGWYPIKDVAAIEDIAARLARESAR
                     PGLRLEMLIDHPNDRERLNGSGLFVLNPPWMLREEADVVLPALAERLSRSGYGAFRNE
                     AFGPEA"
     gene            complement(918..1574)
                     /locus_tag="VE686_07210"
     CDS             complement(918..1574)
                     /locus_tag="VE686_07210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018045905.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease T2"
                     /protein_id="HYY84274.1"
                     /translation="MRRAALVGAALALALISGPGQAQGGRGGTPGDFDFYVLALSWSP
                     AFCAGDSGRRAREQCAPGSNLGFVVHGLWPQYERGYPSQCGVERSPSRIAMEEARGVY
                     PEEGLARHEWRVHGTCSGLSPAEYFRTVRQARDRVRVPEQFQRAGASQNLTPLEIARA
                     FAQVNPGLRPDTMAVVCRREALQEMRFCLDRDLRSFRSCPQVARAGCSFGALRLEASR
                     "
     gene            complement(1571..2053)
                     /locus_tag="VE686_07215"
     CDS             complement(1571..2053)
                     /locus_tag="VE686_07215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007562510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY84275.1"
                     /translation="MVRRRPVHETLAMRLAAVLLPLALLASSAALAREITPAERREVP
                     FDDQFPVCHHPTVMEKIGTQFAEKEARFWNSSLTILEVERIRPLAWKPWGLDYIPRRF
                     CTGTALLSDGRRRRIDYSVREDLELGFLGQTKTWGVEFCVSGLDRNWAYEPNCKMARP
                     "
     gene            complement(2122..>2351)
                     /locus_tag="VE686_07220"
     CDS             complement(2122..>2351)
                     /locus_tag="VE686_07220"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY84276.1"
                     /translation="VDSDPFAVSSRAPARQGSSGPPVAALREVEPVYASRLSGRGATA
                     APSGAAAGAPPTPPQRPMVLQPQLWSGRPTH"
BASE COUNT          335 a          811 c          889 g          316 t
ORIGIN      
        1 atcggacggg gactcctgga atacggtcgc gctttgtcgc gcacgggcgc tgccgccgca
       61 agcgtcaagc ctcaggtccg aacgcctcgt tgcggaaggc gccgtaacct gagcgcgaca
      121 gccgctcggc gagcgcgggc aggacgacgt cggcctcctc gcgcagcatc cacggcggat
      181 tgagcacgaa cagccccgag ccgttgagcc gctcgcgatc gttcggatga tcgatgagca
      241 tctcgagcct caagcccggt cgggcgctct cgcgcgcaag gcgcgccgcg atgtcctcga
      301 tggcggcgac gtccttgatc gggtaccagc cggcgtagat gccggtcggc cacttgcgtg
      361 cggctttgag gagctcgctc gcaagtcggt cgagctcgcc cggctcctcg tagggcgggt
      421 cgacgagcac gagcccgcgc cgctcgttcg gcgggatgag ggcgtggagc gcggtccacc
      481 cgtcgaggcg catgaccttg aggttggaca ccgcgttgaa gcggctcgac agcgccttgg
      541 cgtcggccgg gtgcagctcg acgaagacgc cgcggtcctg gcgccggatg agctcgcgca
      601 cgatggcggg cgagcccggg taggcgctcg cgccgtggcg ggcccgcacg ccttcgagga
      661 cgccccggta cggcgccagc aggtcctcga cctcgggcga gaagggtgcc tccatgcggg
      721 cgacgcctgc gcgccactcc gccgtcttgc ccgccgcctc cgcctcgagg tcgtagagcc
      781 cgacccctga gtgggtgtcg acgacccgga acggggcctc cttccgcgcc aggtggacga
      841 gaatgcgcgt gaggaacacg tgcttcatca cgtcggcgaa gttcccggcg tggtaggcgt
      901 ggcggtagtt cacggcgcta gcgggaggcc tcgaggcgca gggcgccgaa gctgcagccg
      961 gcgcgcgcga cctgcgggca gctgcggaac gagcgcaggt ccctgtcgag gcagaagcgc
     1021 atctcctgca gcgcctcgcg acggcagaca accgccatgg tgtcggggcg caggccggga
     1081 ttcacctgcg cgaaggcgcg ggcgatctcg agcggcgtca ggttctgcga cgcgccggcg
     1141 cgctggaact gctcggggac gcgcacgcgg tcgcgggcct gacgcacggt gcggaaatac
     1201 tcggccggag agagccccga gcaggtgccg tggacgcgcc actcgtgccg ggcgagcccc
     1261 tcctcaggat agacgcccct cgcctcctcc atggcgatgc gcgacgggct gcgctcgacg
     1321 ccgcattgcg acggataccc gcgctcgtac tgcggccaga ggccgtgcac gacgaagccg
     1381 aggttgcttc ccggcgcgca ttgctcgcgc gcccggcgcc cgctgtcgcc agcgcagaac
     1441 gccggcgacc acgacagggc caggacatag aagtcgaagt cgcccggggt accgccgcgg
     1501 ccgccttggg cctggccggg gccgctgatc agtgcgagcg cgagggccgc gccgacgagc
     1561 gcggcacgcc tcacgggcgc gccatcttgc agttcggctc gtaggcccag ttgcggtcga
     1621 ggccggaaac gcagaactcg acgccccagg tcttcgtctg gccgaggaac ccaagctcga
     1681 ggtcctcgcg cacggagtag tcgatccggc ggcggcggcc gtccgacagc agcgccgtgc
     1741 cggtgcagaa ccggcgcggg atgtagtcga ggccccacgg cttccaggcc agcgggcgga
     1801 tgcgctcgac ctcgaggatg gtcaggctgg agttccagaa gcgcgcttcc ttctcggcga
     1861 actgggtgcc gatcttctcc atcacggtcg ggtggtggca gaccgggaac tggtcgtcga
     1921 agggaacttc gcgccgctcc gccggcgtga tctcgcgcgc cagcgcggca gaggacgcca
     1981 gaagggcaag cgggaggagg acggccgcaa ggcgcatggc gagtgtctcg tgcacgggtc
     2041 tgcgccggac catgcgagcc gccgttttcc cggtcaagcc gggcccagcc tcccggcggc
     2101 gcttttccgg cgggtgtggc gctagtgggt cgggcgcccg ctccacagct ggggctgcag
     2161 caccatgggc cgctgcggcg gcgtcggtgg cgcgcctgct gcggcgccgg aaggggccgc
     2221 ggttgcgccg cggcctgaca accgcgaggc gtagaccggc tcgacctcgc gcagcgctgc
     2281 gacgggcggc cccgacgagc cttgccgtgc gggcgcgcgc gaggacaccg cgaacggatc
     2341 ggagtccacg t
//
LOCUS       DASQWN010000378         2337 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_428552, whole genome shotgun sequence.
ACCESSION   DASQWN010000378 DASQWN010000000
VERSION     DASQWN010000378.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2337)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2337)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2337
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_428552"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>2337
                     /locus_tag="VE686_07225"
     CDS             <1..>2337
                     /locus_tag="VE686_07225"
                     /inference="COORDINATES: protein motif:HMM:NF016260.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="translocation/assembly module TamB
                     domain-containing protein"
                     /protein_id="HYY84277.1"
                     /translation="QLTGTLSRLDAKAAATITDATALGRPIPRLALDATVTDLTGLID
                     ARTTLSGEVNRKPANGTIHVAKRPEGGWLLDSLDVTIGSVAIRGNVTLDNANLASGRL
                     GVDARDLDDLSALALTRLSGDLTADVVLDAPSGRQDVQVEARGARIRAADIAVERLDA
                     RVSAGDIYARPIVNAAVAIDRATVAGETFSQVRLDATGTPAASDIVLSAQARGFNLDA
                     RGRLVPDTPLRFDLAAFTARRDGRRIALTGPTTLTFGDGGVTVRQLSLGIDRGTISLD
                     GRAGSSLDLRVSAQAVPLSAADIVVPNTGLSGTLDGSAQIGGTAAEPTGDWRIRLSRL
                     VLPQTRDIGAPPIDVSAQGRLGGGATSVDGTLSAGRAGTLRVTGRVPLAANGALDVNA
                     QGRIDLGLANNVLSAAGRQVSGTANIDMRIGGTIAEPSVNGSLALSGGSFRDALQGIR
                     LDNIQGRLVARGTDVTIERLSAATSNGGTLSASGRIRIDPAAGFPGDIRITGQRAELA
                     SNEFVTTSADLALALSGPLSRDPRVTGQVRILSMDVTIPESLPVTVRPIPGTRHVRPT
                     PTAVRRLALEARAKANARGAPAFNATLDLVVSAPNRIYVRGRGIDAELGGDLRLTGSL
                     RDPVAIGAFDLRRGRLTVVGTRLDFTRGRLTFTGDLTPELDFLAETRAADVTARIGVT
                     GTARQPQFAFTSDPDLPQDEVLSRLLFAKASGGLSATQALQLAQVAAQFSGGGGNDVF
                     ESLRRSLGVEGLDISLGAEGGPTVGISRAISDRVSIGV"
BASE COUNT          333 a          877 c          779 g          348 t
ORIGIN      
        1 cgcagctcac cggaaccctg tcccgcctcg atgcgaaagc cgccgcgacg atcaccgacg
       61 cgaccgccct cggacgcccg atcccgcggc tcgccctcga tgccacggtc accgacctaa
      121 cgggactgat cgatgcgcgc acgaccttgt ccggcgaggt gaaccggaaa ccggcgaacg
      181 gcacgatcca tgtggccaag cgcccggagg gcggatggct cctcgactcc ctcgacgtga
      241 ccatcggctc cgtcgccatc cggggcaacg tgaccctcga caacgccaac ctcgcgtccg
      301 gccgcctcgg cgtcgatgcg cgcgatctcg acgacctatc cgccctggcg ctgacccgcc
      361 tgtcgggcga tctcacggcc gatgtggttc tggatgcccc gagcgggcgg caggacgtgc
      421 aggtcgaagc gcgcggcgcg aggatcaggg cggccgacat cgccgtggag cgcctggacg
      481 ctcgggtctc cgcgggcgac atctatgcca gacccatcgt caatgcggcc gtcgccatcg
      541 accgggcgac cgtcgccggc gagacgttct ctcaggtcag gctggacgcc acgggaacgc
      601 cggcggcaag cgatatcgtg ctctcggccc aggcccgagg cttcaatctg gacgcccgcg
      661 gccgcctggt gccggacacg ccgctccgct tcgatctcgc cgccttcacg gcgcggcgcg
      721 acgggcggcg gatcgcgctc accgggccga cgaccctgac cttcggcgac ggcggcgtca
      781 ccgtgcgcca gctttcgctc ggcatcgacc ggggcacgat cagcctcgac gggcgcgcag
      841 gctcttcgct cgaccttcgg gtgtcggccc aggccgtgcc cttatccgct gccgatattg
      901 tcgtgccgaa taccggcctc tccggcaccc ttgacggaag cgcccagatc ggcggcacgg
      961 ccgccgagcc gaccggcgat tggcgcattc gcctgtcccg cctcgtcctc ccgcagaccc
     1021 gcgacatcgg agctccgccc atcgacgtgt ccgcccaggg ccgtcttggg ggcggcgcga
     1081 ccagtgtcga cggcaccctg agcgccggcc gcgcgggcac gctccgcgtg accggccggg
     1141 ttccgctcgc ggccaacggc gcccttgatg tgaatgccca gggccgcatc gatctcggtc
     1201 ttgccaacaa cgtcctgtcc gcagcggggc ggcaggtctc cggcacggcc aatatcgaca
     1261 tgcggatcgg cggtacgatc gcggagccga gcgtgaacgg ctcccttgcc ctgtcgggcg
     1321 gaagcttcag ggacgccctg caggggatcc gtctcgacaa catccaggga cgccttgtgg
     1381 cccgcgggac cgatgtgacc atcgagcgcc tctccgccgc cacgagcaac ggcggcacgc
     1441 tctcggcgag cggacgcatc cgcatcgatc cggcggcagg ctttcccggc gacatccgca
     1501 tcaccggcca gagagccgag cttgcgtcca acgagttcgt gaccacctcg gcggatctcg
     1561 cgcttgccct gtcgggtccg ctctcgcgcg atccccgcgt gacgggacag gtgcgcattc
     1621 tctccatgga cgtgacgatc cccgagagcc tgccggtgac ggtgcgcccc attcccggca
     1681 cccggcatgt ccggccgacg cccaccgcag tcaggcgtct tgccctggag gcaagggcga
     1741 aggccaatgc gcggggtgcc ccggccttca acgcgaccct cgatctggtg gtctcggccc
     1801 ccaatcggat ttacgtgcgc gggcgcggca tcgacgcgga actggggggc gacctgcgcc
     1861 tgaccggctc cttgagggat cctgtggcca tcggcgcgtt cgacctgcgc cgcggacgcc
     1921 tcacggtggt cggcacgcgc ctcgacttca cccgcgggcg gctcaccttc accggcgacc
     1981 tgacgccgga actcgacttc ctggcggaga cgcgcgcggc cgacgtgacc gcccgcatcg
     2041 gcgtgacggg aacggcgcgg cagccgcaat tcgccttcac gtccgatccc gatcttcccc
     2101 aggacgaggt tctgtcccgg cttctcttcg ccaaggcgtc cggcggcctc tccgccaccc
     2161 aggcgctcca gctcgcgcag gtggcggcgc agttctccgg cggaggaggc aatgacgtat
     2221 tcgagagcct gcgccgctcg ctcggcgtcg aagggctcga tatttcgctc ggcgctgagg
     2281 gaggtccgac ggtgggaatc tccagagcca tcagcgaccg ggtcagcatc ggcgtca
//
LOCUS       DASQWN010000379         3174 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_528074, whole genome shotgun sequence.
ACCESSION   DASQWN010000379 DASQWN010000000
VERSION     DASQWN010000379.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 3174)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3174)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3174
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_528074"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..263)
                     /locus_tag="VE686_07230"
     CDS             complement(<1..263)
                     /locus_tag="VE686_07230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017485437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016747 - acyltransferase activity,
                     transferring groups other than amino-acyl groups [Evidence
                     IEA];
                     GO_process: GO:0009245 - lipid A biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LpxD N-terminal domain-containing protein"
                     /protein_id="HYY84278.1"
                     /translation="MVEPVFFPRGPSLPLRDLAELAGAPLPDGADPAAAVVDIAPLEV
                     AGPGELAYMDNPKYVAALETTRAGFCLVSKKFAARVPPGTVALV"
     gene            complement(319..2856)
                     /gene="bamA"
                     /locus_tag="VE686_07235"
     CDS             complement(319..2856)
                     /gene="bamA"
                     /locus_tag="VE686_07235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003598044.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein assembly factor BamA"
                     /protein_id="HYY84279.1"
                     /translation="MMSKSRKRRRFSAIKAAVGLVFAAVTSLSAATAQDIEVRGNAHI
                     DSETVRSYIGSSGGSIEDARRKMLATGLFSDVRMEYTASRRVVASVSAQRMINRVAFE
                     GNSRVKSATILPELQTKAHTPYNPATVERDREGILELYRRSGRGLATVTPRLVDLPNG
                     TVDVVFTIVEGGKTGVKEIVFVGNQVFSSSRLRDLMNTTEMNLLSFIKNSDVYDPEKI
                     AADQEIIRRYYLKHGYADFRFVGTDARFDSAAGGWIVTMTVQEGPQYRVSDVQVDARL
                     GVDPGLVRNRIATSPGDVYNAEAVERSLTEVTTDLARRGHAFAQVRPVGHRDPATQTI
                     ALGYVVEEGPHVYIERINIRGNTRTRDYVIRREFDVGEGDAYNKVLMDRAERRLNNLG
                     YFKKVRISNEPGSSPDRVVVNVEVEDQATGAFSISGGYSTADGIVSELSISESNFLGR
                     GQFVRLAGSLGQRSRGVDFSFTEPYFLGYRMAAGFDVFSKYTDQTRSARYENRVVGGQ
                     LRVGLPITEEIGVTLRYSLYESQLKIPNTVKMPYNDCSFPLPGITPLNSGTGIPGTDG
                     APNRFFCESNGEASSAIKQSTGRTMTSLVGLTLSYNSLDSFRDPRNGFLVEVKPEVAG
                     LGGDSKFVRTTLDGRYYRELFEDVVGIARVQAGTIAGYSENKNNAGGNLRITDHFFMG
                     PSLVRGFATSGIGPRDIATLDNRGNAIGGTSYIGASLEVQFPIWGLPRDLGLKGAIFA
                     DAGTLFGYKGPRAFDLNGNGIVDGAVNGICVGSVLVQPECVRVHDKRVIRSSVGASIL
                     WKSPLGPIRFDYAFALSQDKGTFDPVTQRRVGKDELQAFRFSGGTSF"
     gene            complement(3026..>3174)
                     /locus_tag="VE686_07240"
     CDS             complement(3026..>3174)
                     /locus_tag="VE686_07240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012453949.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="RIP metalloprotease RseP"
                     /protein_id="HYY84280.1"
                     /translation="EGSRGRPLSDRAQEIGFRIGLAIVVMLMLFATWNDIVHLGASFS
                     GRGT"
BASE COUNT          536 a         1023 c         1086 g          529 t
ORIGIN      
        1 accagggcca ccgtccccgg cggcacacgc gcggcgaact tcttcgacac aaggcaaaag
       61 cctgcccgcg tcgtctcgag cgccgcaacg tacttcggat tgtccatgta ggcgagttcg
      121 cccggcccgg cgacctcgag cggggcgatg tcgaccacgg cggcggccgg gtccgctccg
      181 tcgggaagcg gcgcgcctgc aagttccgcc aagtcgcgca gcggcagcga ggggcctcgc
      241 ggaaagaaaa cgggctcgac catcaggcct cgaatgcggc gccgggcaat cccggcgccg
      301 cggcgctcac agaagcgctt agaagctcgt gccgccggag aagcggaacg cctgcagctc
      361 gtccttgccg acgcgacgct gcgtgaccgg gtcgaaggtg cctttgtcct ggctcagggc
      421 gaaggcgtag tcgaaccgga tcgggccgag cggcgacttc cacaggatgc tggcaccaac
      481 cgacgagcgg atgacccgct tgtcgtgcac gcgcacgcac tcgggctgga caagtacgct
      541 gccgacgcag atgccgttga cggcgccgtc cacgatgccg ttgccgttca ggtcaaaggc
      601 acgcgggccc ttgtagccga acaaagtgcc ggcgtcggcg aagatggcgc ccttcaggcc
      661 gaggtcgcgc ggcaggcccc aaatcgggaa ctgcacctcg agcgacgccc cgatgtacga
      721 ggttccgccg atggcgttgc cgcggttgtc cagggtcgcg atgtcgcgcg gaccgatgcc
      781 cgaggtcgca aagccgcgca ccagcgacgg tcccatgaag aaatggtccg tgatgcgcag
      841 gttgccgcca gcattgttct tgttttcgct gtagccggcg atggtgccgg cctggacgcg
      901 ggcgatgccg accacgtcct cgaacagctc cctgtagtag cggccgtcga gggtggtgcg
      961 cacgaacttc gagtcgccgc cgaggcccgc gacctcgggc ttgacctcga cgaggaagcc
     1021 attgcgcggg tcccggaagc tatcgagcga gttgtacgac agcgtcagac cgaccagcga
     1081 ggtcatcgtc cgacccgtgg actgcttgat ggccgacgag gcctcgccgt tcgactcgca
     1141 gaagaagcgg ttcggcgcgc catcggtacc agggatgccc gttccggagt tgagcggggt
     1201 gatgcccggg agggggaacg agcagtcgtt gtacggcatc ttcaccgtgt tcgggatctt
     1261 cagctgcgac tcgtacagcg agtagcgcag cgtcacgccg atctcttcag tgatcgggag
     1321 gccgacgcgg agctggccac cgacgacccg gttctcgtag cgggcgctcc gcgtctggtc
     1381 ggtgtacttc gagaacacgt cgaagccggc cgccatgcgg tagccgagga agtacggctc
     1441 ggtgaacgag aagtcgacgc cacggctgcg ctggccgagg ctgccagcca ggcggacaaa
     1501 ctggcctcgt ccgaggaagt tcgactccga gatcgagagc tcgctgacga tgccgtccgc
     1561 ggtcgagtag ccgcccgaga tcgagaacgc gccggtcgcc tggtcttcga cctcgacgtt
     1621 gacgacaacg cggtcgggcg acgagccggg ctcgttcgag atccggacct tcttgaaata
     1681 gccgaggttg ttgagacggc gctcggcgcg gtccatcagc accttgttgt aggcatcgcc
     1741 ctcaccgaca tcgaactcgc ggcggatcac gtagtcgcgc gtccgggtgt tgccgcggat
     1801 gttgatgcgc tcgatgtaga cgtgcggacc ctcctcgacg acgtagccga gggcgatcgt
     1861 ctgggtggcg gggtcgcgat gaccgaccgg gcgcacctga gcgaaggcgt ggccgcgccg
     1921 ggcgaggtcg gtcgtaactt cggtaagcga gcgctcgacc gcctcggcgt tgtagacgtc
     1981 gccgggcgag gtcgcgatgc ggttgcggac gagacccgga tccacgccca ggcgcgcatc
     2041 cacctgcacg tcgctgacgc ggtactgggg cccttcctgc accgtcatgg tgacgatcca
     2101 gccgccggcg gccgagtcga agcgagcgtc ggtcccgacg aagcggaagt cggcgtagcc
     2161 gtgcttcagg tagtagcgcc ggatgatctc ctggtcggcg gcgatcttct ccgggtcgta
     2221 gacgtcggaa ttcttgatga agctgaggag gttcatctcc gtcgtgttca tgaggtcgcg
     2281 caggcgcgac gacgagaaca cctggttgcc gacgaagacg atctccttga cgcccgtctt
     2341 gccgccttcg acgatggtga acaccacgtc caccgtgccg ttgggcagat ccacgagccg
     2401 aggcgtgacg gttgcgaggc cgcggccgct gcggcggtag agctcgagga tgccttcgcg
     2461 gtcgcgctcg acagtcgcgg ggttgtaggg cgtgtgtgcc ttggtctgca gctcgggcag
     2521 gatcgtcgcg ctcttgacgc gcgagttacc ctcgaacgcc acacgattga tcattctctg
     2581 ggcgctgacc gacgcaacca cgcgccgtga ggccgtgtac tccatgcgca cgtccgagaa
     2641 gaggccggtc gccagcatct tgcgccgggc gtcctcgatc gagccgccgg acgagccgat
     2701 gtacgagcgg acggtctcgg aatcgatgtg cgcattgcca cgcacctcga tgtcctgggc
     2761 cgtcgccgcc gagagggagg tcactgcggc aaacacgagg ccgacagcgg ctttgatcgc
     2821 cgaaaaacgc cggcgcttcc tggacttcga catcatcgac tggcccgtct cttttcttcg
     2881 gtcgccgcgg gttcgagccc gcaagccggc aaacaggtag cctgccgacc ttaactggtc
     2941 cgtaccgctt gtacaaaagt tgctgcccgg cgcaaccggc caccatccct gccccgtgct
     3001 attttcccgg gacgtggcct tcgtgtcacg tccctcggcc ggagaatgac gccccaagat
     3061 gaacgatatc gttccaggtg gcgaacagca tgagcatcac gacgattgcg agcccgatgc
     3121 gaaacccgat ctcctgggcg cggtcgctca agggccgtcc tcggctgcct tcaa
//
LOCUS       DASQWN010000380         2580 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1156773, whole genome shotgun sequence.
ACCESSION   DASQWN010000380 DASQWN010000000
VERSION     DASQWN010000380.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2580)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2580)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2580
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1156773"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     regulatory      complement(<1..92)
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00174"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="cobalamin riboswitch; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /bound_moiety="adenosylcobalamin"
                     /db_xref="RFAM:RF00174"
     regulatory      141..352
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00174"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="cobalamin riboswitch; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /bound_moiety="adenosylcobalamin"
                     /db_xref="RFAM:RF00174"
     gene            384..2384
                     /locus_tag="VE686_07245"
     CDS             384..2384
                     /locus_tag="VE686_07245"
                     /inference="COORDINATES: protein motif:HMM:NF012801.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HYY84281.1"
                     /translation="MSIVIRRTLAASALVASATLAQAQSPDIVVTPTRTAQPIQRAGS
                     AVTVITAQDIEKTSAKDLGEVLRLSPGLTLARNGGPGQFQAVRIRGGDARHTLVLLDG
                     IRVNDPTTTGREFDFATLVPADIERIEVLRGPQSALYGSDAMGGVINIITKRGRGAPR
                     ATVAVEAGSYGTKETRANVSGGDDRVDYSFGFSAVETAGFSSFGYRIPRLRYVAPWGF
                     EPDGNRRLGFTGRVGVNIADGVRLELGGSTSFNRAQFDAAFLPFPDTPSLATSELHNV
                     YGKLIADSFGGKLRNTVTVFANRVDRAYENVSYFGPRTALTTSRSDTSFIGERTGAEY
                     QGDLNLGPFGLTTFGARVERETADSFSQAVFPALRREMRTIAAEQTTRSVFALHQVSL
                     FERLHLSLGGRLDQVVSPDRQITGISGESERTVDRFGTWRATAAYEILETETKLRASA
                     GTGAKAPSLFQLYSPSFGTPGLQTEHSWGVDAGVDQVLANGAVKLSATAFLNRYRNLI
                     DFATGATICPPATRPFGCYFNVARARTSGFELSGDVKLVPELAHLRITYTNLSAVDLT
                     RRLDLARRPRHEGRVGLVLTPIEGLSLEPTVVFVGERFSGTNESDRLAPYARLDAYVS
                     YKVNDTFSVYGRAENLTDTRYEEVRNFGTPGRSFYAGVRATW"
     gene            2395..>2580
                     /locus_tag="VE686_07250"
     CDS             2395..>2580
                     /locus_tag="VE686_07250"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY84282.1"
                     /translation="MRRDAERTSIDAGRLVAPALGTLVVVLALASLAIGPAQIAPWTA
                     AKALVSDIGNVTVIVREI"
BASE COUNT          404 a          934 c          859 g          383 t
ORIGIN      
        1 gcgggggcag ccccggcctt ggacctcgac gaggtccgca ccgggttccc gtttcacctt
       61 ctcgcgaagg caccaacgtc ggggcgactc ctaggcctcc cggctgcggg ccgcaatcgt
      121 gccggcgcgg ccgcaggagt aggagtccga ccgacgttgg tgccttcgcg agaaggtgaa
      181 acgggaaccc ggtgcggacc tcctcgaggt ccaatgccgg ggctgccccc gcaactgtaa
      241 gcggcgagcg cgcgatccac gaagccactg atcctctttg ggattgggaa ggcggatcgc
      301 tcaacgcgac gacccgcgag ccaggagacc ggccagcgtc acgcgtaaac gctcatgtcc
      361 gccggtgggg cggaggaggt ctcatgtcta tcgtcatccg ccgcaccctt gcggcatccg
      421 ccctcgtcgc gtccgcaacc ctggcgcagg cgcagtcccc cgacatcgtc gtcactccga
      481 cacgcacggc gcagccgatc cagcgcgccg gcagcgccgt cacggtgatc accgcgcagg
      541 acatcgagaa gacgagcgcc aaggacctcg gcgaggtcct gaggctctcg ccggggctga
      601 cgctcgcccg caacggcggg ccggggcagt tccaggcggt gcgcatccgc ggcggcgacg
      661 cgcgccacac cctggtgctt ctcgacggca ttcgcgtcaa cgatccgacc acgacggggc
      721 gcgagttcga cttcgcgacc ctcgtcccgg ccgacatcga gcgcatcgag gtcctgcgcg
      781 ggccgcaatc cgccctctac ggctccgacg ccatgggcgg tgtcatcaac atcatcacca
      841 agcgcggccg aggcgccccc cgcgccaccg ttgcggtcga agccggcagc tacggcacca
      901 aggagacgcg ggcaaatgtc tcgggcggcg acgaccgggt cgactattcg ttcggcttct
      961 cggccgtcga gacggcgggg ttctcgagct tcggctaccg cataccgcgc ctgcggtacg
     1021 tcgcgccctg ggggttcgag cccgacggca atcgccgcct cggcttcaca gggcgcgtcg
     1081 gcgtgaacat cgccgacggc gtgcggctcg aactgggcgg ctcgacgagc ttcaaccgag
     1141 cgcagttcga tgccgccttc ctgcccttcc ccgatacgcc gtcgctcgcc acgagcgagc
     1201 tgcacaacgt ctacggcaag ctcatcgcgg actcgttcgg cggcaagctg cgcaacaccg
     1261 tgacggtctt cgccaaccgg gtggaccggg cctacgagaa cgtcagctac ttcgggccga
     1321 ggacggcact cacgacgtca cggagcgata cgagcttcat cggcgagcgc accggggcgg
     1381 agtaccaggg cgatctcaat ctgggaccct tcgggctcac gaccttcggc gcgcgcgtcg
     1441 agcgcgagac ggcggattcg ttctcgcagg ccgtcttccc ggcacttcgc cgcgagatgc
     1501 ggaccatcgc ggccgagcag accacgcggt cggtcttcgc cctgcaccag gtctcgctgt
     1561 tcgagcggct gcacctgtcg ctcggtggcc ggctcgatca ggtggtgagc ccggaccggc
     1621 agatcaccgg catatccggc gaaagcgagc gcaccgtcga ccgcttcggt acctggcgcg
     1681 cgaccgcggc atacgagatt ctcgagacgg agaccaagct gcgcgcaagc gccggcaccg
     1741 gcgcgaaggc gccgtcgctc ttccagctct acagcccgtc cttcggcact cctggcctgc
     1801 agacggagca ctcctggggg gtcgacgccg gggtcgacca ggtgctcgcg aacggcgcgg
     1861 tgaagctttc cgcgacggcg ttcctcaacc gctaccgcaa cctcatcgac ttcgcgaccg
     1921 gcgcaacgat ctgcccgccg gcgacgcggc ccttcgggtg ctacttcaac gtggcccggg
     1981 cccgcaccag cgggttcgag ctttcgggcg acgtgaagct ggtgcccgag cttgcgcacc
     2041 tgcgcataac ctacaccaac ctgtcggccg tcgatctcac gcggcggctc gatcttgccc
     2101 ggcgcccgcg gcacgagggc cgtgtcggcc tggtgctcac gcccatcgaa ggcctgtcgc
     2161 tcgagccgac agtggttttc gtcggcgagc gcttctcggg taccaacgag agcgaccgcc
     2221 tcgcccctta cgcgcgcctc gacgcttacg tgagctacaa ggtgaacgac accttcagcg
     2281 tctacgggag ggcggagaac ctcaccgaca cgcgctatga agaggtgcgc aacttcggca
     2341 ccccgggccg aagcttctac gccggcgttc gcgcgacctg gtgagggagg acatgtgaga
     2401 cgggacgcgg agcggacgag catcgacgcg ggccgcctcg tcgcgcccgc gctcggcacg
     2461 ctcgtcgtcg tcctggcgct cgcgtccctc gccatcggcc cggcccagat cgcgccgtgg
     2521 accgccgcga aggcgctcgt ctccgacatc ggcaacgtga ccgtgatcgt gcgcgagatc
//
LOCUS       DASQWN010000381         2150 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_826136, whole genome shotgun sequence.
ACCESSION   DASQWN010000381 DASQWN010000000
VERSION     DASQWN010000381.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2150)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2150)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2150
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_826136"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..356
                     /locus_tag="VE686_07255"
     CDS             <1..356
                     /locus_tag="VE686_07255"
                     /inference="COORDINATES: protein motif:HMM:NF014659.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="YqgE/AlgH family protein"
                     /protein_id="HYY84283.1"
                     /translation="TDHTMRLGARLIGRAEYERRLRAALIVEDDLGFVPAEIDDRDEF
                     ASGVRRVRVFAGHSGWGPGQLEAELEEDSWIIEPAKRGDVFNADPEALWSQVLRRKGA
                     EYVLLATMPMDPSLN"
     gene            complement(349..1017)
                     /locus_tag="VE686_07260"
     CDS             complement(349..1017)
                     /locus_tag="VE686_07260"
                     /EC_number="2.3.2.6"
                     /inference="COORDINATES: protein motif:HMM:NF015546.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008914 - leucyl-tRNA--protein transferase
                     activity [Evidence IEA];
                     GO_process: GO:0030163 - protein catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="leucyl/phenylalanyl-tRNA--protein transferase"
                     /protein_id="HYY84284.1"
                     /translation="MHRGRDLLGPGAAREATEPPSKVGSLSSDVDQAIALYAAGFFPM
                     DDLDEAFGPLPFYAAEDRAVFELDERTRARVRRRVHRSLRHGAGWTLRMDTAFARVLD
                     ACARPRTEDDGVWITPRLAALYADLHRAGYAHSFEIHAHDRLGAGMIAVLLGRAAMLE
                     SMAHWVSHAGNVLVARTLDHLAERGYHFADVQMPTQHTMRLGARLISREQYERRLRAA
                     LTLS"
     gene            1012..1617
                     /locus_tag="VE686_07265"
     CDS             1012..1617
                     /locus_tag="VE686_07265"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY84285.1"
                     /translation="MQEVLPGVLHWTTHHEGIGTRVHSHFAVEAAALIDPRLPEGGVE
                     EVAQYGRPDRILLSNRHHLRHSEQFAAAFRCPIRCHEAGLHEFRDGPGVQPFRFGDEV
                     APGITALEMGALTPEDTVFRLDAGPGALLFADGLIRDGDGGLTFVPAWLMGDDPEDVR
                     RGLCDSLRRLLDEDFDALLFAHGEPMPEGGHDALRAFVSAG"
     gene            1804..>2150
                     /locus_tag="VE686_07270"
     CDS             1804..>2150
                     /locus_tag="VE686_07270"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY84286.1"
                     /translation="MRFIRKVRSMRMTPLTVIAIVVAVFMVSGGAYATAATLISGKQI
                     LDGSLTGRDIKKGSLDAKVFKKGTIRDGKNGANGAPGANGAAGATGATGAQGVTGATG
                     AQGAQGVAGSEGA"
BASE COUNT          299 a          748 c          816 g          287 t
ORIGIN      
        1 cgaccgacca cacgatgcgc ctcggcgcgc gcctgatcgg ccgcgccgag tacgagcgcc
       61 ggctgcgcgc ggcgctcatc gtcgaagacg acctcggctt cgtccccgcc gagatcgacg
      121 accgcgacga gttcgcctcc ggcgtgcggc gcgtgcgcgt gttcgccggg cactccgggt
      181 ggggccccgg tcagctcgag gccgagctcg aggaggactc ctggatcatc gagccggcga
      241 agcgcggcga cgtgttcaac gccgaccccg aggcgctctg gtcgcaggtc ctgcggcgca
      301 agggcgccga gtacgtgctg ctggcgacga tgccgatgga cccgtcgctc aactgagcgt
      361 cagcgccgcc cgcagccgcc gctcgtactg ctcgcgcgag atcagccgcg cgccgaggcg
      421 catcgtgtgc tgcgtcggca tctgcacgtc ggcgaagtgg tagccgcgct cggcgaggtg
      481 gtcgagcgtg cgcgcgacga gcacgttgcc ggcgtgggag acccagtgcg ccatcgactc
      541 gagcatcgcc gcccggccga ggagcacggc gatcatgccg gcgccgaggc ggtcgtgggc
      601 gtggatctcg aacgagtgcg cgtagccggc gcggtggagg tccgcgtaga gggcggcgag
      661 gcgcggcgtg atccagacgc cgtcgtcttc cgtgcgcggc cgcgcgcacg cgtcgagaac
      721 ccgggcgaac gcggtgtcca tccgcagcgt ccagccggcg ccgtggcgca ggctgcggtg
      781 gacgcggcgc cggacccgcg cgcgcgtgcg ctcgtcgagc tcgaagacgg cgcggtcctc
      841 ggcggcgtag aacggcagcg gcccgaacgc ctcgtcgagg tcgtccatcg ggaagaaacc
      901 cgccgcgtag agagcgatgg cctggtcgac gtcggagctc aggctgccga ctttagacgg
      961 cggctcggta gcctcccggg ccgcccccgg ccccaggagg tcccgccccc gatgcaagag
     1021 gtccttcccg gtgtcctgca ctggacgacg caccacgagg gcatcggcac gcgcgtgcac
     1081 tcgcacttcg ccgtcgaagc cgccgccctg atcgacccgc gccttcccga aggcggcgtc
     1141 gaggaggtgg cgcagtacgg caggcccgac cggatcctcc tttcgaaccg tcatcacctg
     1201 cgccacagcg agcagttcgc cgccgcgttt cgctgcccga tccgctgcca cgaggccggc
     1261 ctgcacgagt tccgcgacgg cccgggggtg cagccgttcc gcttcggcga cgaggtcgcg
     1321 cccggcatca cggcgctcga gatgggagcg ctgacgccgg aggacacggt cttccgcctc
     1381 gacgcggggc ccggcgcgct gctgttcgcc gacgggctga tccgcgacgg cgacggcgga
     1441 ctgacgttcg tccccgcctg gctgatgggc gacgacccgg aggacgtgag gcgcgggctg
     1501 tgcgactcgc tgcgccggct gctcgacgag gacttcgacg cgctgctttt cgcgcacggc
     1561 gagccgatgc cggagggcgg ccacgacgcg ctccgggcgt tcgtctcggc gggctgagcc
     1621 tggacgcaac ccccgcgcac ggtgttcacg tccatgaacg gtcgcggacc ggatgaccca
     1681 ttgccggtcg ggagaccctg acccatagtg ctcgaggccc ggtcaggggt gtccgggtgg
     1741 cgcagcgaga gcggacgggg gtgtccgcgg gtgcgccgca aacagcagat ttgggggttt
     1801 cacatgcggt tcatccgcaa ggtgcgcagc atgcgcatga cgccgctgac ggtcatcgcg
     1861 atcgtcgtgg ccgtcttcat ggtcagcggt ggcgcgtacg ccacggccgc cacgctcatc
     1921 agtggtaagc agatcctcga cgggtcgctg accgggcggg acatcaagaa gggctcgctg
     1981 gacgcgaagg tcttcaagaa gggcacgatc cgcgacggca agaacggcgc gaatggtgcg
     2041 cccggggcga acggcgcggc cggcgccacg ggcgcgactg gcgcccaggg cgtgaccggc
     2101 gcgaccggtg cgcagggcgc tcagggcgtg gccggctcgg agggcgcgga
//
LOCUS       DASQWN010000382         2044 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_662089, whole genome shotgun sequence.
ACCESSION   DASQWN010000382 DASQWN010000000
VERSION     DASQWN010000382.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2044)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2044)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2044
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_662089"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(158..568)
                     /locus_tag="VE686_07275"
     CDS             complement(158..568)
                     /locus_tag="VE686_07275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009763588.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042314 - bacteriochlorophyll binding
                     [Evidence IEA];
                     GO_process: GO:0019684 - photosynthesis, light reaction
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PRC-barrel domain-containing protein"
                     /protein_id="HYY84287.1"
                     /translation="MEVKATNPDTRETRNLIASDKVEGTPVRRSDGEKIGTIERVMIE
                     KRSGKVAYAVMSFGGFMGLGEEYYTLPWSVLTYNTSLDAYELNLSEDQLRGAPRRSAE
                     GHDPSFDRDWEEHVHRYYNATPYWGGSDPMSTGR"
     gene            719..1867
                     /locus_tag="VE686_07280"
     CDS             719..1867
                     /locus_tag="VE686_07280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017483028.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HYY84288.1"
                     /translation="MTVRLKRVEDQVIVLTGASSGIGLATAHAAAARGARLVLVSRND
                     AALQQAARECNDMGGRAIAVVADVARREDLEHVARVAVETFGGFDTWINNAGLSVYGT
                     LERIPLEDHRRLIDVNYWGVVHGSLIAARHLRARGGAIINTGSVVSDRAVPLQGPYSA
                     SKFAVKAFTDTLRMELEHDGAPVSVTLIKPSAIDTPFFEHARTYLETPGVWNPPPAYD
                     PSLVAKAMLHACENPKRSITIGAGGAVIGLMGRIAPRLTDFAMEQVAFAVQKSQEPGR
                     RSRRDNLYAPREDGAERSSLPGSSRKTSLYLESQLHPVATMALLGGLGVAFGLMVRPR
                     RSAPPTKPSRRDGMMARPRGEPYDGGRIRDGQRPPRRVRRETRDQPHA"
BASE COUNT          290 a          727 c          700 g          327 t
ORIGIN      
        1 ctcgccgggg catggccgat gccgctaccc atgtccttgt cctttgcgac caacgcgcca
       61 gcctactgcg aggcgccggt ttcgccgaac atgggtggct caacgaaaag gccgccccga
      121 aaggcggcct cgatctgacg gctttggttg cgcggcttca gcgcccggtg ctcatcgggt
      181 cggagccgcc ccagtagggc gtcgcattgt agtagcggtg cacgtgctct tcccagtcgc
      241 ggtcgaagga tgggtcgtgc ccttcggccg agcgccgcgg cgcgccgcgc aactgatcct
      301 cgctcaggtt gagctcgtag gcgtccagcg acgtgttgta ggtcagcacg ctccagggca
      361 gcgtgtagta ctcctcgccg aggcccatga aaccgccgaa gctcatgacc gcgtaggcga
      421 ccttgccgct gcgcttctcg atcatgaccc gttcgatggt gccgatcttc tcgccgtccg
      481 agcgccgcac cggcgtgccc tcgaccttgt cgctggcgat gaggttgcgg gtttcgcgcg
      541 tgtcgggatt ggtggccttg acctccatga cttctctccg tcgcaagagg acttctgcaa
      601 ggaacgtttc ggtcggagcg ggggttccgg cgcgccgccg cgcgggagag gtagcccgga
      661 accgggggtt ggccccgacg ttggagggca ttcagagacc ttccaggagt cactgcccat
      721 gaccgttcgt ctgaagcggg tcgaggacca ggtcatcgtg ctcaccggag cgtcgagcgg
      781 catcgggctt gcgaccgcac acgcggccgc cgcgcgcggc gcgcgtctcg ttctggtgtc
      841 gcgcaacgac gcggcgctgc agcaggctgc gcgcgagtgc aacgacatgg gcgggcgcgc
      901 catcgcggtg gtcgccgatg tggcgcggcg cgaggatctc gagcacgtgg cgcgcgttgc
      961 ggtcgagacc ttcggcggct tcgacacctg gatcaacaac gccggcctgt cggtctacgg
     1021 cacgctcgag cggatccctc tcgaggatca tcgccgcctc atcgacgtga actactgggg
     1081 cgtggtgcac ggctccctca tcgcggcgcg gcacctgcgc gcgcgcggcg gcgccatcat
     1141 caacaccggc agcgtcgtca gcgatcgcgc ggttccgctg cagggtccgt actcggcttc
     1201 caagttcgcc gtgaaggcct tcacggacac cttgcgcatg gagctcgagc acgacggcgc
     1261 gcctgtctcc gtcacgctca tcaagccgtc ggcgatcgac acgcccttct tcgagcacgc
     1321 ccgcacctac ctcgagacgc ccggcgtgtg gaacccgccg cccgcctacg acccgagcct
     1381 cgtcgccaag gccatgctgc acgcctgcga gaacccgaag cggagcatca ccatcggcgc
     1441 cggcggcgcc gtcatcggcc tcatgggccg gatcgcgccg cgcctcaccg atttcgccat
     1501 ggagcaggtc gccttcgcgg tgcagaaatc gcaggagccc ggccgccgct cgcgtcgcga
     1561 caatctctat gcaccgcgcg aggacggcgc cgagcgctcg tccctccccg gcagctcgcg
     1621 caagacgagc ctgtatctcg agtcgcaact gcatcctgtc gccacgatgg cgctgctcgg
     1681 cggcctcggc gtcgccttcg ggctgatggt gcggccgcgc cgaagcgcgc caccgaccaa
     1741 gccgtcgcgc cgcgacggca tgatggcccg gccgcgcggc gagccgtacg acggcgggcg
     1801 catacgcgac gggcagcgtc cgccccgccg cgtccgtcgc gagacgcgcg accagccgca
     1861 cgcctgagag ggctgcggga cgcgtcgtga ggggagcgtt aaccatgcgc ggctagaacg
     1921 agcgggccgt cctggagccg cccgtgcctg tcgtccctgc cgacctcatc gctgtcggcc
     1981 gcggtccgca aggagcgccg ggccgcaggt cgacaaggga aacccgcgcc tcgctttggt
     2041 ggct
//
LOCUS       DASQWN010000383         5413 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_230688, whole genome shotgun sequence.
ACCESSION   DASQWN010000383 DASQWN010000000
VERSION     DASQWN010000383.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 5413)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5413)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5413
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_230688"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..723
                     /gene="sseA"
                     /locus_tag="VE686_07285"
     CDS             <1..723
                     /gene="sseA"
                     /locus_tag="VE686_07285"
                     /EC_number="2.8.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018043085.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004792 - thiosulfate sulfurtransferase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-mercaptopyruvate sulfurtransferase"
                     /protein_id="HYY84289.1"
                     /translation="AVRFDIDTVKDTSSPLPHMLPRPEAFASAVRALGIGDGMTIVVY
                     DGAGLFSAPRVWWTFRVFGARDVVILDGGFPTWKAEGRPVEEGPPPARKPRHFTARLD
                     HSAVADANDVRKALEAGSAQVVDMRSAERFRGDAPEPRPGLRSGHIPGSLNLPSSELM
                     TRGRLKSPDELRSLVEKAGIDLARPIVTTCGSGVSAAILSVALETIGKPAKALYDGSW
                     SEWGGREDLPVATGPAGRESGA"
     gene            complement(727..1740)
                     /locus_tag="VE686_07290"
     CDS             complement(727..1740)
                     /locus_tag="VE686_07290"
                     /inference="COORDINATES: protein motif:HMM:NF016041.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_process: GO:0008610 - lipid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sterol desaturase family protein"
                     /protein_id="HYY84290.1"
                     /translation="MLEFLDANPLSAFAGMFQDPRSRWFVLYLATSLAIAYALFRAQA
                     RHDPELAEEGFFGFAFPKEIYGHASAKVDYWFYGLNKLLFAAVFASTAMLASWTFGGA
                     KLALGTVVHGPLLGSHPVVAAVATTILYVLAFDFALWLAHYLFHRVPLLWEFHKVHHS
                     AEVLTPFSAGRVHPVDDLVGYAMTGVFGGVMAALCDMMFGPEALVMSPFQLHVVMLVF
                     FLFGFHLRHSHVWLPYTGVLGKLLISPAHHQVHHSSAERHWDRNMGFIFAFWDWMFGT
                     LHVPDKKQEQFPLGIGGEEKEFNSVWRLYALPFVKAWRRVVRRRARRVPPAPQPASKP
                     VEA"
     gene            complement(1810..2580)
                     /gene="tpiA"
                     /locus_tag="VE686_07295"
     CDS             complement(1810..2580)
                     /gene="tpiA"
                     /locus_tag="VE686_07295"
                     /EC_number="5.3.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019403642.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004807 - triose-phosphate isomerase
                     activity [Evidence IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="triose-phosphate isomerase"
                     /protein_id="HYY84291.1"
                     /translation="MSVDRPRPLVAGNWKMNGLKRSASVLGEIAAGYTPALRAKVDLL
                     VCPPVTLIHPFAREAVGTRIAIGGQDTHAEEAGAYTGNVSAEMLADLGATYVIVGHSE
                     RRSYHREKDQDVRDKVEAARRAGLTAIVCVGETREEREAGKAVAVVRRQLRGSLPEGM
                     NARDLVVAYEPVWAIGTGLTPTAADVAEIHAAIRAELKRLVGKSDQPLVRVLYGGSVK
                     PSNAKELLFVENVDGALVGGASLVAADFLGIAAAYADA"
     gene            2723..4618
                     /locus_tag="VE686_07300"
     CDS             2723..4618
                     /locus_tag="VE686_07300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009491164.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SurA N-terminal domain-containing protein"
                     /protein_id="HYY84292.1"
                     /translation="MLKGFRKAGESWVGKAVITVLFGLLIVSFAVWGIGDIFRQTGPS
                     YAIQVGTTRITPEAVRTAYQAEVQRLSRQFRRTITPEQARMIGLERQVVTRLVTDAVL
                     DERARAMGLAVSDDLVARMIREDPSFRGPSGQFDRAVFEDVLRNNGLNEATYVRDQRG
                     AVARLQLAEAITGNLPVPVAAREAVHRYTAERRSVAYVMLPAAAAGDIPAPTDEQLRA
                     FYEERKASFRSPEYRALTVVALDAEALAKPDQITDADARQRYEQTKARYGSPERRAVQ
                     QIIFPNEEEAQAALDKIKAGATFQSVAQERNVDPGALDLGTVTKQELIDKAVAEAAFA
                     LAEGATSAPVKGQFGTVLVHVAKVEPERVKPFEEVADEVRREAAQERARSQIETVHDA
                     IEDARAGARPLADAAREKGLAVLSIPAVDRSGRDKAGQPVAIPDREAVLTAAFASDVG
                     VDNESLRLRNGGYVWFDVTGIEPARDKRLEEVRDEVARRWREEQVAQRLADKARSMVE
                     RLEKGDAIEAVAADAGQPVKTAEGLARGAARDDLATDVVARIFATPVGKSSSAASGET
                     RAVFKVTAATVPPFVTTTQEAQRLEDQLRAAMSDDLLTQYIAQAQGEIGVTVNQEAVR
                     RAVGGET"
     gene            4626..>5413
                     /locus_tag="VE686_07305"
     CDS             4626..>5413
                     /locus_tag="VE686_07305"
                     /EC_number="4.1.3.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007561517.1"
                     /note="with component II, the glutamine amidotransferase,
                     catalyzes the formation of anthranilate from chorismate
                     and glutamine; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anthranilate synthase component I"
                     /protein_id="HYY84293.1"
                     /translation="MQVEPAYEAFAAAYGAGSPCVLRTTLVGDLLTPVAAFIKLRHGR
                     KGPAFLLESVEGGATRGRYSMIGLDPDLVWRCRDGRAELNRDPASAPKAFAADERPAL
                     ESLRAVIAESAIALEDTLPPMAAGLFGYLGYDMVRLMERLPAPNPDVLGVPDAILVRP
                     TVMVVFDSVRDEIVLITPVRPQSGTSPKAAYEGALSRLDGVTWALERPLPLDDRADPR
                     TLPAPAPVSNTAPEEFVGMVERAKEYIRAGDVFHVVLSQRFDAP"
BASE COUNT          866 a         1900 c         1900 g          747 t
ORIGIN      
        1 gcggtccggt tcgacatcga caccgtcaag gacacctcgt ctcccctgcc gcacatgctg
       61 ccgcggcccg aggccttcgc gtcggcggtg cgggcgctcg gcatcgggga tggcatgacc
      121 atcgtggtct acgacggcgc cgggctgttc tcggcgccgc gcgtgtggtg gaccttccgc
      181 gtcttcggcg cccgcgacgt cgtcatcctc gacggcggct ttccgacctg gaaggccgag
      241 gggcggcccg tggaggaagg tccgcctccc gcgcgcaagc cgcggcactt cacggccagg
      301 ctcgatcact ccgccgtcgc ggacgcgaac gacgtccgca aggcgctcga ggccggatcg
      361 gcgcaggtcg tcgacatgcg ctcggccgag cgtttccgcg gcgatgcgcc ggagccgcgg
      421 cccgggctgc gctcaggcca catcccgggg agcctcaacc tgccctcgag cgagctcatg
      481 acgagaggac ggctgaaatc gccggacgag ctccgctcgc tggtcgaaaa agcagggatc
      541 gatctcgccc gccccatcgt cacgacctgc ggctccggcg tctcggccgc gatcctgtcg
      601 gtggcgctcg agaccatcgg caagcccgcg aaagcgctgt acgacggctc ctggtccgaa
      661 tggggcggtc gcgaagactt gcccgtcgcg acgggaccgg cggggcggga gagcggcgcc
      721 tgaggcctat gcttcgacgg gcttggacgc aggctgcggc gcaggcggaa cgcgcctcgc
      781 ccggcggcgc acaacgcggc gccacgcctt gacgaatggc agagcgtaga gccgccacac
      841 ggagttgaac tccttctcct cgccgccgat gccgaggggg aactgctcct gcttcttgtc
      901 tggcacgtgc aacgtgccga acatccagtc ccagaaggcg aagatgaagc ccatgttgcg
      961 gtcccagtgc cgctccgccg aggagtgatg cacctggtgg tgcgcagggc tgatgaggag
     1021 cttgcccagc acgccggtgt agggcagcca cacgtgcgaa tggcgcaggt ggaagccgaa
     1081 caggaagaac accagcatga ccacgtgcag ttggaacggg ctcatgacca gcgcctcggg
     1141 gccgaacatc atgtcgcaaa gcgccgccat gacgccgccg aagacgcccg tcatcgcata
     1201 gccgacgagg tcgtcgacgg ggtgcacgcg gccggccgag aacggcgtca gcacttcggc
     1261 cgagtggtgc accttgtgga attcccacag gagcggaacg cggtggaaca ggtagtgggc
     1321 gagccagagg gcgaagtcga aggcaaggac gtagaggatg gtcgtcgcta cggctgcgac
     1381 cactggatgg ctgccgagca gcggaccgtg aacgaccgtc cccagcgcga gcttggcgcc
     1441 cccgaaggtc catgaggcga gcatcgccgt cgaggcgaag acggcggcga acagaagctt
     1501 gttcaggccg tagaaccagt agtccacctt ggcggacgcg tggccgtaga tctccttcgg
     1561 gaacgcgaag ccgaaaaagc cctcttccgc cagctccgga tcgtgccgcg cctgcgcccg
     1621 gaacagcgcg taggcgatgg cgagcgaggt cgcgagatag aggacgaacc agcggctgcg
     1681 cgggtcctgg aacatgcccg cgaacgcgct cagggggttt gcgtcgagga attccagcat
     1741 ggcccagctc cgaaacggag cgaggttagg cgcgccggcc taaccggccg taaaccttga
     1801 ggcgcaaatt caggcgtccg cgtaagcagc ggcgatgccg aggaagtccg ccgcaacgag
     1861 gcttgccccc ccgacgagcg cgccatcgac gttctcgacg aacaagagct ccttggcgtt
     1921 ggagggcttc accgagccgc catagaggac acgcacgaga ggctggtcgg actttccgac
     1981 cagccgcttc agctcggctc ggatcgccgc gtggatctcg gccacatcgg ctgccgtggg
     2041 cgtgaggccg gtcccgatcg cccacacggg ctcgtacgcg acgacgaggt cgcgggcgtt
     2101 catgccttcg gggagcgagc cgcggagttg ccggcgcacc actgccacgg ccttgccggc
     2161 ctcgcgctcc tcgcgcgtct cgccgacgca tacgatcgcc gtgaggcccg cgcggcgcgc
     2221 cgcctcgacc ttgtcgcgga catcctggtc cttctcgcgg tggtacgagc ggcgctcgga
     2281 gtgaccgacg atgacataag tcgcgccgag atcggcgagc atctcggccg agacgttgcc
     2341 cgtataggcg cccgcctcct cggcgtgcgt atcctggccg ccgatggcga tgcgcgtccc
     2401 gacggcctcg cgcgcgaacg ggtggatgag cgtgacgggt gggcagacca ggaggtcgac
     2461 cttggcgcga agcgccggcg tgtagcccgc cgcgatctcg ccgagcacgc tcgccgagcg
     2521 cttcagcccg ttcatcttcc aattccccgc gacgagggga cgcggacgat cgacgctcat
     2581 gccatgctcc ggtttcgcgc ggcctgctat cagacacggc aacgcttcac aatcagctcc
     2641 gctcgccctc aggtgtcggc agggctttgc gccacggcgg cgcttgcgct atcgccacgg
     2701 cacaacatcg ggacgggtct tcatgctcaa gggtttccgc aaggccggcg agagctgggt
     2761 cggcaaggct gtgatcacgg tcctgttcgg cctcctgatc gtcagcttcg ccgtctgggg
     2821 catcggcgac atcttccgtc agaccggacc gagctacgcc atccaggtcg ggaccacgag
     2881 gatcacgccg gaggcggtgc gcacggcgta ccaggcggaa gtgcagcgcc tgtcgcgcca
     2941 gtttcgccgc accatcacgc cggagcaggc gcgcatgatc ggcctcgagc gtcaggtcgt
     3001 gacgcgcctc gtcacggacg ccgttctcga cgagcgcgcg cgggccatgg ggctcgccgt
     3061 ctcggacgac ctcgtcgcgc gcatgatccg cgaggacccg agcttccgcg gcccgagcgg
     3121 ccagttcgac cgcgccgtgt tcgaggacgt gttgcgcaac aacggcctca acgaagcgac
     3181 gtacgtgcgc gaccagcgcg gcgccgtcgc ccgcctccag ctcgccgaag cgatcaccgg
     3241 caacctgccc gttccggtcg cggcgcggga ggccgtgcat cgctacaccg ccgagaggcg
     3301 ctcggtcgcc tacgtgatgc ttcccgccgc cgcggccggc gacatcccgg ctccgacgga
     3361 cgagcagctc cgggccttct acgaggagcg caaggcgagc ttccgctcgc ccgaataccg
     3421 ggcgctcacc gtcgtggctc tcgacgccga ggccctggcc aagcccgatc agatcacgga
     3481 cgccgacgcg cgccagcgct acgaacagac gaaggctcgc tacggctcgc ccgagcgccg
     3541 cgccgtgcag cagatcatct tcccgaacga ggaggaggcg caggcggccc tcgacaagat
     3601 caaggcgggt gcgacgttcc agtcggtcgc gcaggagcgc aacgtcgacc cgggcgcgct
     3661 cgatcttggc acggtgacga agcaggagct catcgacaag gcggtggccg aggccgcgtt
     3721 cgcgctcgcg gagggtgcga cgagcgcacc cgtcaagggg cagttcggca ccgtgctggt
     3781 ccacgtcgcc aaggtcgagc ccgagcgcgt gaagccgttc gaggaagtcg ccgacgaggt
     3841 gcgccgtgag gccgcacagg agcgcgcacg cagccagatc gagaccgtgc acgatgccat
     3901 cgaggacgcc cgcgcgggcg cccggccgct cgccgacgct gcgcgcgaga agggcctcgc
     3961 ggtgctgtcg atccccgcgg tcgaccgctc gggccgcgac aaggccgggc agccggtcgc
     4021 catcccagac cgcgaagcgg tgctcaccgc cgccttcgct tccgacgtcg gcgtcgacaa
     4081 cgagtcactg cgcctgcgca acggcggcta cgtctggttc gacgtcaccg ggatcgagcc
     4141 ggcccgcgac aagaggctcg aggaggttcg cgacgaggtc gcccgccgct ggcgcgagga
     4201 gcaggtcgcg cagcgcctgg ccgacaaggc gcgcagcatg gtcgagcgcc tcgagaaggg
     4261 cgacgccatc gaggccgtcg ccgcggatgc gggccagccg gtgaagacgg ccgaggggct
     4321 tgcccggggc gctgcccgcg acgacctcgc aaccgacgtc gtcgcgcgca tcttcgcgac
     4381 gcccgtcggc aaaagcagca gcgccgcatc gggcgagacc cgggccgtgt tcaaggtcac
     4441 cgccgcgacg gtgccgccat tcgtcacgac cacgcaggag gcgcagcgcc tcgaggacca
     4501 gctgcgcgcg gccatgagcg acgacctcct cacccagtac atcgcccagg cgcagggcga
     4561 gatcggcgtg accgtgaacc aggaagccgt gcgccgcgcc gttggcggcg agacgtaaaa
     4621 acgggatgca ggtcgagccg gcctacgagg cgtttgccgc ggcctacggc gcggggagcc
     4681 cgtgcgtcct gcgcacgacc ctcgtcggcg atctgctgac gcccgtcgcg gccttcatca
     4741 agctgcggca cgggcgcaag ggaccggcct tcctgctcga gtcggtggaa ggcggcgcca
     4801 cgcgcggccg ctactccatg atcggcctcg atcccgatct cgtctggcgg tgccgcgacg
     4861 gccgggcgga gctcaaccga gaccccgcgt ccgcaccgaa ggcattcgct gctgacgagc
     4921 ggcccgcgct cgagagcttg cgcgccgtga tagccgagag cgcgatcgcg ctcgaggata
     4981 ccctcccgcc catggcggcg ggcctgttcg gctacctcgg ctacgacatg gtccggctga
     5041 tggagcgcct gccggcgccg aacccggacg tcctcggcgt ccccgacgcc atcctggtac
     5101 gtccgaccgt gatggtggtt ttcgactccg tccgcgacga gatcgtcctc atcacgccgg
     5161 tgcgcccgca gtcggggacg tcgcccaagg ccgcgtacga gggtgcgctc agccgcctcg
     5221 atggcgtcac ctgggcgctg gagcgcccgc tgcctctcga cgaccgcgcc gacccgcgga
     5281 cgctgcctgc cccggcgccc gtgtcgaaca ccgcgcccga ggagttcgtc ggcatggtcg
     5341 agcgcgcgaa agagtacatc cgcgccggcg acgtctttca cgtggtcctg tcgcagcggt
     5401 tcgacgcccc ctt
//
LOCUS       DASQWN010000384         5351 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_330404, whole genome shotgun sequence.
ACCESSION   DASQWN010000384 DASQWN010000000
VERSION     DASQWN010000384.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 5351)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5351)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5351
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_330404"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..939
                     /locus_tag="VE686_07310"
     CDS             <1..939
                     /locus_tag="VE686_07310"
                     /EC_number="5.4.2.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015822519.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0008973 - phosphopentomutase activity
                     [Evidence IEA];
                     GO_process: GO:0009117 - nucleotide metabolic process
                     [Evidence IEA];
                     GO_process: GO:0043094 - cellular metabolic compound
                     salvage [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphopentomutase"
                     /protein_id="HYY84294.1"
                     /translation="SRGKDTPSGHWEIAGVPVDFDWGYFPATEPAFPGDLTAAIIREA
                     GLPGILGDRHASGAAVIDELGPEHLRTGKPICYTSVDSVFQIAAHEEAFGLERLYEIC
                     HIARRLCDPYRIGRVIARPFVGSPQAGFTRTGNRKDFATPPPTDTLLDCLERAGRAVV
                     TVGKIGDIFAHRSTGRELKPHGNDACLAAALDAFRTLPDGGFVFANLVDFDTEYGHRR
                     DVPGYAAALEAFDARIPEVRAALRDGDLGVITADHGNDPTFRGSDHTREHIPILPLGP
                     GVATGPIGRRETFADIGATIARHLAVTVPEAGTAWF"
     gene            1105..2805
                     /locus_tag="VE686_07315"
     CDS             1105..2805
                     /locus_tag="VE686_07315"
                     /inference="COORDINATES: protein motif:HMM:NF014763.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sensor histidine kinase"
                     /protein_id="HYY84295.1"
                     /translation="MEEVRGLQGVEVPPAARFARGDRLRTLYFIAAAVLAALVPLILF
                     AGLWVRSELDKGQRELETYLSEGADALLQRLDADIRQQISVLQAIASAPSLDEPDLVY
                     FHTTAARMLSSMPQWAAISLIDPADGRQVVNTLRPVGAPLPTTAAIPAMREVVETRLP
                     RVFTRAPGPDAIYPGRIVLLLVPVVREGVVRHVLAAAMKAEAVQDLLKQQIQDDRLLA
                     TVADEHGRILARSRGLGELIGRDLPEAFRRDTAARNSGVVVAQSLDGQWLTTAFRRSS
                     VTGWIAAAGIDRAQFSMLSYRSTWAMIATGALSLTLAGVLAMFLFYTVMERRITNERL
                     SASRILGELDARLLATTQEALAEQRKAAAEREVLLREIYHRVKNNLQIVQSLLRLGSR
                     DLTPEQREPFEGAVRRIGAMARVHTLLYNSPDLASVDFGEYLTGIVSETGEAFGADER
                     SIRTAVDVKPMRVPLDVAVPLAFIAVELLTNAFKHAFPAGRAGTVTVKAWQEGTEGRL
                     MIADDGVGVASPAGGRRPLGLTIVSRLVQQIGGTFEEPPPGRSAFRVSFPLTAPPGAS
                     "
     gene            2919..3350
                     /locus_tag="VE686_07320"
     CDS             2919..3350
                     /locus_tag="VE686_07320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009763496.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Hsp20 family protein"
                     /protein_id="HYY84296.1"
                     /translation="MSRQSPFGLPFLLGFDEIEQALDRVSKVGTDGYPPYNIERLART
                     EQDPERLRITLAVAGFTRDQLEITLEENQLVVRGRQAEDKSRHFLHRGIAARQFQRAF
                     LLAEGMEVLGADLSNGLLSIDLARPEPERIVRKITIAGDKA"
     gene            3365..3628
                     /locus_tag="VE686_07325"
     CDS             3365..3628
                     /locus_tag="VE686_07325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009763497.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1150 domain-containing protein"
                     /protein_id="HYY84297.1"
                     /translation="MTTIAEKTNQPIQIADLAVLGEGHVAYVKPIRSDEVRQLFPQAP
                     ELAPGLELFALLSASGAPIMLTDSRDAAVANAWAHDLQTVSLH"
     gene            complement(3640..4404)
                     /locus_tag="VE686_07330"
     CDS             complement(3640..4404)
                     /locus_tag="VE686_07330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009494550.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HYY84298.1"
                     /translation="MLQFVDVGEGADARRLATLVRDGRGPTVVWLGGFRSDMRATKAE
                     ALDAWATRTGRRFVRFDYSGHGESGGTFETSGISTWLEDALAVITGFTRERPILVGSS
                     MGGWLALLATRALLAGPSDRAPAGLVLIAPAADFTERLMWERFPEDIRRAIDTEGVYL
                     QPSIYSDEPYPITRALIEDGRRHLLMGAKPIATGCPVHILQGMQDPDVPWRHALALVE
                     HLPGDCVSMTLVKDGDHRLSRDEDLERLVAAVEAIA"
     gene            4479..>5351
                     /locus_tag="VE686_07335"
     CDS             4479..>5351
                     /locus_tag="VE686_07335"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018042012.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HYY84299.1"
                     /translation="MSVATRPAGASFPTSAHPLSGRTILQIIPDLEAGGAERTAVDVA
                     AGLAHVGARPVVATGGGRLVGELQAKGGIWAPFPAGAKNPLAMALNVRRLAKLCLDEG
                     ATIIHARSRAPAWVALGTARALNLPFVTTYHGSYAGRSSVKLLYNSVMARGDVVIANS
                     HFTAEVIRSVYPPAAERIRVIHRGTDLSAFSPAAVAPERVEAMRRAWGVAPDERVVLL
                     AARLTGWKGQRVLVEAAAELKKAGLDGVAFVLAGDPQGRDAYVKELDLAIKGRGLEGI
                     VRRVGHCTDMPAAFL"
BASE COUNT          779 a         1949 c         1828 g          795 t
ORIGIN      
        1 tcccggggca aggacacgcc ctccggacat tgggagatcg cgggcgtgcc cgtcgatttc
       61 gactggggct atttcccggc gaccgaaccc gccttcccgg gcgacctcac ggcggcgatc
      121 atccgcgagg ccggcctgcc cggcatcctc ggcgaccgcc acgcctcggg ggccgccgtc
      181 atcgacgagc tcgggcccga gcacctgcgg accggcaagc ccatctgcta cacctccgtc
      241 gacagcgtgt ttcagatcgc cgcgcacgag gaggccttcg ggctcgagcg gctgtacgag
      301 atctgccaca tcgcgcggcg cctctgcgac ccctacagga tcggccgcgt catcgcgcgg
      361 cccttcgtcg gctcgcccca agcagggttc acccggaccg ggaaccgcaa ggatttcgcg
      421 acgcccccgc caaccgacac gctcctcgat tgtctcgaac gcgcgggccg cgccgtcgtc
      481 acggtcggca agatcggcga catcttcgcc caccgcagca cggggcgcga gctcaagccg
      541 cacggcaacg acgcctgcct cgcggccgcg ctcgacgcct tccgcacgct gccggacggc
      601 ggcttcgtgt tcgccaacct ggtcgatttc gacacggagt acggccaccg gcgcgacgtg
      661 cccggctatg ccgccgccct cgaggccttc gacgcccgca ttcccgaggt ccgcgccgcg
      721 ctgcgcgacg gggatctcgg ggtgatcacg gccgaccacg gcaacgaccc gacgtttcgc
      781 ggcagcgacc acacccgcga gcacatcccg atcctcccgc ttgggcccgg cgtcgcaacg
      841 ggcccgatcg gtcggcgcga gaccttcgcc gacatcggcg ccaccatcgc caggcacctc
      901 gccgttacgg tccccgaggc cggcaccgcc tggttctgaa gcgcgccacg gccccaggac
      961 gacgggcgga gagccggaac cgcgccaacc ccggagagtt tgccccccga agacgatgct
     1021 ttcgccgcgt cggggccact ctcactccgg cgcctcatat caggggcgtt ttggcccgcc
     1081 ggccgcgggc ctttggtgcg tatcatggag gaagtcaggg gacttcaggg ggtcgaagtg
     1141 cctccggcgg cccgattcgc acgaggcgac cggcttcgca cgctgtactt catcgccgcc
     1201 gcggtgctcg cggcactcgt gccgctcatc ctgttcgccg gcctgtgggt gcgctccgag
     1261 ctcgacaagg gccagcgtga gctcgagacc tacctgagcg aaggcgccga tgccctcctg
     1321 cagcggctcg acgccgacat ccgccagcag atctcggtcc tccaggcgat cgcctcggcc
     1381 ccgagcctcg acgagcccga cctcgtctac ttccacacga cggcggcccg gatgctctcg
     1441 tcgatgccgc aatgggccgc gatctcgctc atcgatcccg ccgacggacg ccaggtcgtc
     1501 aacacgctgc gtccggtcgg cgcgcccctg ccgacgacag ccgcgatccc ggccatgcgc
     1561 gaagtggtcg agacgcgact gccgagggtt ttcacacgag cgcccggacc ggatgcgatc
     1621 tacccggggc gcatcgtgct cctgcttgtc ccggttgtgc gcgagggggt cgtccgccac
     1681 gtgctcgcgg ctgcgatgaa ggccgaggcg gtgcaggatc tcctgaagca gcagatccag
     1741 gatgaccgcc tgctcgcgac cgtcgcggac gagcacggcc gcatcctggc ccgctcgcgc
     1801 ggccttggcg agctcatcgg gcgggacctc ccggaggcat tcagacgcga caccgccgcc
     1861 cgtaactccg gggtggtcgt cgcgcagtcg ctcgacggcc agtggctgac gacggcgttc
     1921 cggcgctcga gcgtcaccgg ttggatcgcc gcggcaggca tcgaccgcgc gcagttcagc
     1981 atgctgtcgt accgctcgac gtgggcgatg atcgcgacgg gcgcgctgag cctgacgctt
     2041 gcgggcgtgc tggcgatgtt cctgttctac accgtcatgg agcgccggat caccaacgag
     2101 cgcctctcgg cctcgcgcat cctcggcgag ctcgacgcgc ggctgcttgc gacgacgcag
     2161 gaggcgcttg ccgagcagcg caaggcggcg gccgagcgcg aggtgctgct tcgggagatc
     2221 tatcatcggg tcaagaacaa cctgcagatc gtccagagcc tgttgcggct cggctcgcgc
     2281 gacctgacgc ccgagcagcg cgagccgttc gagggcgcgg tccggcgcat cggcgccatg
     2341 gcccgggtcc acacgctgct ctacaactcg ccggacctcg cctcggtgga cttcggggaa
     2401 tacctcaccg gcatcgtgag cgagacgggc gaggcgttcg gggccgacga gcgctccatc
     2461 cgcaccgccg tcgacgtgaa gcccatgcgc gtgccgctcg acgtcgccgt ccccctcgcg
     2521 ttcatcgccg tcgagctgct caccaatgcc ttcaagcacg ccttcccggc gggccgagcc
     2581 ggcaccgtca ccgtcaaggc ctggcaggag ggcactgaag gccgcctgat gatcgccgac
     2641 gacggcgtgg gcgtggcgtc gcctgccggc gggcggcgcc cgctcggcct caccatcgtg
     2701 tcgcgcctgg tccagcagat cggcgggacc ttcgaggagc cgccgcccgg gcggtcagcg
     2761 ttccgggtga gctttcccct gacggcgccg cccggcgcct cttgaacggc aaagcctcaa
     2821 ggccaatatc agcctcaacg ggtccgagag ggctcgcatg agtgccgcag cgcgggctca
     2881 gagttcacga agtgccttat cagagtgggg cttcggtcat gtcgcgtcag tcgccgttcg
     2941 ggctgccgtt cctcttgggc ttcgacgaga tcgagcaggc gctcgatcgg gtctcgaagg
     3001 tcggcacgga cggctatcct ccctacaaca tcgagcggct tgcccgtacc gagcaggacc
     3061 cggagcggct ccggatcacg ctcgcagtgg ccggattcac ccgcgaccag ctcgagatca
     3121 cgctcgagga aaaccagctc gtcgtccgcg gccgccaggc cgaggacaag agccggcact
     3181 tcctgcaccg gggcatcgct gcgcgccagt tccagcgcgc cttcctgctc gccgagggca
     3241 tggaggtgct gggagcggac ctctcgaacg gccttctctc gatcgacctc gcccggcccg
     3301 agccggagcg gatcgttcgg aagatcacca tcgcgggcga caaggcctga aggagtacga
     3361 cggcatgacc accatcgcag agaagaccaa ccagccgatc cagattgccg accttgcggt
     3421 gctcggcgag gggcacgtcg cctacgtgaa gccgatccgg tccgacgagg tccggcagct
     3481 gtttccgcag gcgcctgagc tcgcgccggg gctggagctg ttcgcgctcc tgtcggccag
     3541 cggcgcgccc atcatgctca ccgactcgcg ggatgccgcg gtcgccaatg cctgggcgca
     3601 cgatctccag accgtcagcc tgcactgacg cgcgacctct caggcgatcg cctcgacggc
     3661 ggcgacgagc cgctccagat cctcgtcgcg ggacaggcgg tgatcgccgt ccttgacgag
     3721 ggtcatcgac acgcagtcgc ccggcaggtg ctcgacgagg gcgagggcat ggcgccaggg
     3781 cacgtccgga tcctgcatgc cctggaggat gtgcaccgga cagcccgtcg cgatgggctt
     3841 cgctcccatg agcaggtgcc ggcgcccgtc ctcgatcagg gcgcgggtga tcgggtacgg
     3901 ctcgtccgaa tagatggacg gctgcaggta cacgccttcg gtgtcgatcg cgcggcggat
     3961 atcttccggg aagcgctccc acatcagccg ttccgtgaag tccgccgccg gcgcgatcag
     4021 cacgagcccc gccggggccc gatccgatgg cccggcgaga agggcgcggg tggcgaggag
     4081 ggcgagccag ccccccatgg aggagccgac gaggatgggc cgttcccggg tgaagccggt
     4141 gatgaccgcg agcgcatcct cgagccaggt cgagatcccg gacgtctcga acgtcccgcc
     4201 cgattcgccg tggccggagt agtcgaagcg cacgaagcgc cgcccggtcc gcgtcgccca
     4261 ggcatccagc gcctcggcct tggtggcgcg catgtcggag cggaagccgc cgagccagac
     4321 gacggtcggc ccgcggccgt cgcgtaccag cgtggcgagc cggcgcgcgt cggcgccctc
     4381 gccgacgtcc acgaattgaa gcattgctta accgttccta aatcctcgcg aggcgacctt
     4441 tcaggctcgc gattcgtggg cgagggctgt ttacacccgt gagcgtagcc acgcgaccgg
     4501 cgggcgcgtc ctttccgacg agcgctcatc cgctctcagg acggacgatc ctgcagatca
     4561 ttcccgacct cgaggccggc ggcgcggagc gtacggccgt cgacgtcgcc gcgggcctgg
     4621 cgcacgtcgg cgcgcgtcct gtggtggcga caggcggggg ccgactcgtc ggcgagctgc
     4681 aggccaaggg cggcatctgg gcgcccttcc cggccggcgc caagaacccg ctcgccatgg
     4741 cgctcaatgt gcgcaggctc gccaagctgt gcctcgacga gggcgcgacc atcatccacg
     4801 cacgctcgcg cgcgcctgcc tgggtggcgc tcggcaccgc gcgggcgctg aacctgccgt
     4861 tcgtgacgac ctaccacggc agctacgccg gccgctcctc ggtgaagctt ctgtacaact
     4921 ccgtcatggc ccgcggcgac gtcgtgatcg cgaactcgca cttcacggcc gaggtgatcc
     4981 ggtccgtgta cccgccggcg gcggagcgca tccgggtcat ccatcggggc accgaccttt
     5041 ccgccttctc gcccgcggcg gtcgcgcccg agcgcgtcga agccatgcgc cgcgcttggg
     5101 gcgtcgcgcc cgacgagcgc gtggtgctgc ttgccgcccg tctgacgggg tggaaggggc
     5161 agcgcgtcct tgtcgaggcg gcggccgagc tgaagaaggc gggcctcgac ggcgtcgcct
     5221 tcgtgctggc cggcgacccg caggggcgcg atgcttacgt caaggaactc gatctcgcca
     5281 tcaagggccg cggactcgag gggattgtgc gccgcgtcgg ccattgcacc gacatgccgg
     5341 ccgctttcct c
//
LOCUS       DASQWN010000385         2190 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1157895, whole genome shotgun sequence.
ACCESSION   DASQWN010000385 DASQWN010000000
VERSION     DASQWN010000385.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2190)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2190)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2190
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1157895"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(83..997)
                     /locus_tag="VE686_07340"
     CDS             complement(83..997)
                     /locus_tag="VE686_07340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011470999.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HYY84300.1"
                     /translation="MSLTLLWIPATLAAAAAQTARNATQRKLTETLGTVGATQVRFLY
                     GFPFALIFLAVVFAASGEAIPGPTREFLGFVLLGAVAQIVATALMLAAMRERSFAVVT
                     ALIKTEPVQVALFGLLLLGDRLTATTALAIVIATAGVVLMSFKPGAVDLSRGGSRPLL
                     LGLVAGAFFALAAIGFRGAILALPTGGFVLRATTTVVWGLGVQTALLVAWLSIFNRPA
                     LIGSLREWRPSLSAGFLGALASQFWFIGFALTNAANVRTLALIEVVFAQVVSHRFLAQ
                     GTSAREIAGMALIVAGVALLLFGTSWSV"
     gene            1174..>2190
                     /locus_tag="VE686_07345"
     CDS             1174..>2190
                     /locus_tag="VE686_07345"
                     /EC_number="3.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019906070.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanyl-D-alanine carboxypeptidase family
                     protein"
                     /protein_id="HYY84301.1"
                     /translation="MIASRALRCVSFLAGLLGAGAAFAAGPGLVVDVDSGKVLYAERA
                     TDPWFPASVTKLMTAYVALDMVRSGRASMDKLLTMSEEAAAQPPSKMGFKPGTQITLD
                     NALKIIMVKSANDIAHTIAENLGGSVDGFAAMMNEASLRLGMRESRWTNPHGLPDDRQ
                     QTSARDMAILGRALIRDFPEHADLFRIGAIRFGRSIMRNHNGLLGRYAGVDGMKTGFI
                     CAGGFNVVASANQNGRRLITVVFGGRRANERNLRAADLFDRGFAMSSFWASQTLDQLP
                     ASALPAPPNMRPVVCGGGGPVPGEEDTAATTASATGDSGSALLASAAGAASVRRTDLG
                     PRAYF"
BASE COUNT          378 a          758 c          750 g          304 t
ORIGIN      
        1 ctcgcgcgtt cctagttctc cgactctggc gtccgcgcct gacggtcgca agccgcaaag
       61 ccggcatggc agctatgtgt atctacactg accagctcgt tccgaacagc agaagcgcca
      121 cgccggcaac aatcaaggcc atgccggcga tctcgcgcgc gctcgtgccc tgggccagga
      181 agcgatgcga cacgacttgc gcgaacacca cctcgataag ggcgagggtg cggacgttgg
      241 cggcgttggt gagcgcgaag ccgatgaacc agaactgtga ggcgagggcg ccaaggaagc
      301 ccgccgacag cgaggggcgc cactcgcgca ggctgcctat gagagccggc cggttgaaga
      361 tcgacagcca cgcgacgaga agcgccgtct gaacgccgag gccccagacc acggtcgtgg
      421 tggcgcgcag gacaaagccg cccgtcggca gggccaggat ggcgccgcgg aacccgatcg
      481 ccgcgagggc gaagaatgcg ccggcaacga gccccaggag gagggggcga ctgccgccgc
      541 ggctgaggtc gacggcgccg ggcttgaacg acatcagcac gacgccggcg gtcgcgatca
      601 cgatagcaag cgccgtcgtc gccgtcagcc ggtccccgag cagcaggagg ccgaacagcg
      661 ccacctggac gggctccgtc ttgatgaggg cggtcacgac cgcgaacgag cgctcgcgca
      721 tggccgcgag catgagcgcc gtcgcgacga tctgcgccac cgcgcccagg agcacgaagc
      781 ccaggaattc gcgcgtcggg cccgggatgg cctcccccga cgcggcaaag acgacggcga
      841 ggaagataag cgcgaacgga aagccgtaca ggaagcgcac ctgcgtcgcg ccgacggtgc
      901 cgagcgtctc cgtcagcttg cgctgggtcg cgttgcgggc cgtctgcgcc gcggcggccg
      961 cgagcgttgc cggaatccat aaaagggtaa gactcatcgg ttctactggg agccgctgtc
     1021 gccatgctat cgccacgtat ggcggcttaa ccgggccgga gacaagggct ccttgcctag
     1081 gcaaagccgc cgcccgggat taatcatgat gcccggttgg gcgggacgat cgagagaccc
     1141 cagcatcttg catccgtatt ggagccgagc ggcatgatcg cgagccgagc ccttcgttgc
     1201 gtatcctttc tggccgggct tctcggtgcc ggggccgcgt tcgcggcggg gccgggcctt
     1261 gtggtcgacg ttgactcagg gaaggtgctg tacgccgagc gcgccaccga cccctggttc
     1321 ccggcctcgg ttacgaagct gatgaccgcc tatgtggcgc tcgacatggt ccgcagcgga
     1381 cgagcgtcga tggacaagct cctgaccatg tcggaggagg ccgctgcgca gcccccttcc
     1441 aagatgggct tcaagccggg cacgcagatc acgctcgata atgcgctcaa gatcatcatg
     1501 gtgaagtcgg caaacgacat cgcccacact atcgccgaga acctcggcgg ctcggtcgac
     1561 ggctttgcgg cgatgatgaa cgaggcgtcc ctgcggcttg gcatgcgcga gagccgctgg
     1621 accaacccgc acggcctgcc ggacgaccgc cagcagacat cggcccgcga catggcgatc
     1681 ctcggccgcg ccctcatccg cgacttcccc gagcacgccg acctgttccg tatcggcgcg
     1741 atccgcttcg gtcgctcgat catgcgcaac cacaacggac ttctcggccg ctacgcaggc
     1801 gtcgacggca tgaagaccgg cttcatctgc gccggcggct tcaacgtggt cgcgagcgcc
     1861 aaccagaacg ggcgtcggct gatcacggtg gtgttcgggg gccgccgcgc caacgagcgg
     1921 aacctgcgcg ccgccgacct gttcgaccgc ggcttcgcca tgagctcctt ctgggcaagc
     1981 cagaccctcg accaactgcc cgcgtcagcg cttcccgcgc cgccgaacat gcgcccggtg
     2041 gtctgcggcg ggggcggtcc cgtcccgggt gaggaagaca ccgcggcgac gaccgcgtcc
     2101 gcgacgggcg acagcggctc ggccctcctc gcctcggcgg ccggcgccgc ttcggtccgc
     2161 cgcaccgacc tcggcccgcg ggcctacttc
//
LOCUS       DASQWN010000386         2331 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1158072, whole genome shotgun sequence.
ACCESSION   DASQWN010000386 DASQWN010000000
VERSION     DASQWN010000386.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2331)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2331)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2331
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1158072"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..375)
                     /locus_tag="VE686_07350"
     CDS             complement(<1..375)
                     /locus_tag="VE686_07350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012330412.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin/lipoyl-binding protein"
                     /protein_id="HYY84302.1"
                     /translation="MTRAILILAALAAATLAQAAPAPEPKPSVGPTVTVVRAAERELV
                     ERAVVTGTLIPREEILVVPEIEGQRVAEVLVEEGDVVKTGQVLARLSRDIIEVQLTQN
                     SATLAKADAAIAQARSQIVQAEA"
     gene            complement(372..1016)
                     /locus_tag="VE686_07355"
     CDS             complement(372..1016)
                     /locus_tag="VE686_07355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019402875.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HYY84303.1"
                     /translation="MLAPRPLDDDDRRARILDAAERCFVRSGFHRTTMQDVAAEASMS
                     PGNLYRYFPSKDAIMAGLAERDRAEVAEDFSRLAPSENFLEVFASIGRKHFQHEPRDK
                     AIMCLEIWAEATRNPAFAEMTKAFDCDVIGRMTVLFRDAQEQGFIPATSDPETLALLV
                     STLANGLFVRRAVAADFDPEREVATAMNVIGAAVSGRIDLASNAWRGVSVETAA"
     gene            complement(1186..2025)
                     /locus_tag="VE686_07360"
     CDS             complement(1186..2025)
                     /locus_tag="VE686_07360"
                     /EC_number="3.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009763457.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type 1 glutamine amidotransferase"
                     /protein_id="HYY84304.1"
                     /translation="MALRFLIIEGNTRTARDRYAAAYGRMPSEAYATALQEIVADAVL
                     DLTFPADEGANLPGSQGLAAYDAVFVTGSALNVYDAEPAVTRQIDLMGAIFSSGVPAF
                     GSCWGLQLATVAAGGEVRPNPRGREIGFARNIAPTAAGREHPLMAGRPAAFAAPASHI
                     DTVTALPEGAVVLASNAISEVQAAEIRHDKGVFWGVQYHPEYTLAELASLIERRAKPL
                     AAEGFFASLDDAASYVADLRALDADPSRTDLAWRHGLDAETLDPILRRRELRNFIDHQ
                     VGR"
     gene            2178..>2331
                     /locus_tag="VE686_07365"
     CDS             2178..>2331
                     /locus_tag="VE686_07365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010970157.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EamA family transporter"
                     /protein_id="HYY84305.1"
                     /translation="MWAGNAVAGRLAVGEVSPMALTCLRWLIALAALAALAGPQIRAE
                     APTLLPH"
BASE COUNT          335 a          785 c          864 g          347 t
ORIGIN      
        1 ggcctcggcc tggacgatct ggctcctcgc ctgcgcgatg gcggcgtcgg ccttggcaag
       61 cgtcgcggag ttctgcgtga gctggacctc gatgatgtcc cgcgacaggc gcgcgagcac
      121 ctgcccggtc ttgacgacgt cgccctcctc gacaagcacc tcggcgacgc gctggccctc
      181 gatctcgggc accacgagga tctcctcgcg cgggatcagg gtcccggtga cgacggcccg
      241 ctcgacgagc tcgcgctcag cggcgcggac gaccgtgacg gtcggtccga cggacggctt
      301 gggctcgggg gccggagcgg cctgcgcgag ggtggctgcg gcgagcgccg caaggatgag
      361 gatggcccgg gtcacgctgc agtctccaca gacacgccgc gccaggcatt cgaggcgagg
      421 tcgatgcggc ccgacacggc ggcgccgatg acgttcatgg cggtcgcgac ctcgcgctcg
      481 ggatcgaagt ccgccgcgac cgcgcgccgg acgaaaagcc cgttggccag tgtcgagacg
      541 aggagcgcaa gggtctcggg gtcgcttgtc gccgggatga agccctgctc ctgcgcgtcg
      601 cggaacagaa cggtcatgcg gccgatcacg tcgcaatcga aggctttggt catctccgca
      661 aaggcaggat tgcgggtcgc ctcggcccag atctcaaggc acatgatcgc cttgtcacgg
      721 ggctcgtgct ggaagtgctt gcggccgatg ctggcgaaga cctcgaggaa gttctcgctc
      781 ggcgcgagcc tggagaaatc ctccgccacc tcggcgcggt cgcgctccgc gaggccggcc
      841 atgatggcgt ccttggacgg gaagtagcgg tacaggttgc cggggctcat ggacgcctcg
      901 gcggcgacat cctgcatggt cgtgcggtgg aagccggagc gcacgaagca gcgctccgcc
      961 gcatcgagga tgcgggcgcg gcgatcgtcg tcgtcgaggg gccggggagc gagcatgggc
     1021 ctggggagag cctgagaatg aacgttcatt ctcataaggt cccgggcttc acagggtcaa
     1081 gcgtccaggg gtgatgtgcc ctggcctgaa cgtccgccac gtgcgctagc gcacgaggca
     1141 ctctgggctc agtagacgtg ggtggcgggc tcgcgccgtc agtgctcagc ggccgacctg
     1201 atggtcgata aaattgcgga gttcgcggcg tcggaggatc gggtcgaggg tctcggcgtc
     1261 gagcccgtgg cgccacgcaa gatccgtgcg ggaggggtcg gcgtcgagcg cgcgcaggtc
     1321 ggcgacgtag gatgcggcgt catcgaggct ggcgaagaag ccctccgcag cgaggggctt
     1381 cgcccggcgc tcgatgagcg aggcaagctc ggccagtgtg tactccggat ggtactgcac
     1441 gccccagaac acgcccttgt cgtgccggat ctccgccgcc tgcacctccg agatcgcgtt
     1501 cgacgccagg acgacggctc cctccggcaa ggccgtgacg gtgtcgatgt ggctcgccgg
     1561 ggccgcgaag gcggccggcc tgccggccat cagcgggtgc tcgcggccgg cggcggtcgg
     1621 ggcgatgttg cgcgcgaagc cgatctcccg gccgcgcggg ttcggtcgca cctcgccgcc
     1681 cgccgccacc gtcgcaagct gcaggcccca gcacgagccg aaggccggca cgccgctgga
     1741 gaagatcgcg cccatgagat cgatctgacg cgtgaccgca ggttcggcgt cgtagacgtt
     1801 gagcgccgat ccggtgacga agacggcgtc gtacgccgcg agcccctgag aacccggcag
     1861 gttcgccccc tcgtcggccg ggaacgtgag gtcgagcacc gcgtccgcga cgatctcttg
     1921 cagcgccgtc gcataggctt ccgacggcat gcgcccgtac gcggcggcgt acctgtcccg
     1981 cgccgtgcgc gtgttgccct cgatgatcag aaaccgtaag gccaacggcg ttccctcccg
     2041 gcgtgcggac cgggtgtagc ggaaccgcgc gccggccgcc aaggccagcg aggagcatcc
     2101 tgggaatggc gggtttgcgg gcggcgtggg cgtggttctt ccgacgcccg tacctcgtcc
     2161 tcgcgaccac cgcgaccatg tgggccggca acgccgtcgc gggccggctc gccgtcggcg
     2221 aggtctcccc catggcgctc acgtgcctgc gctggctcat cgcgctcgcg gcgctcgccg
     2281 cgctggcggg cccgcagatc cgcgcagagg cgccgacgct tctgccgcac t
//
LOCUS       DASQWN010000387         2084 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_826457, whole genome shotgun sequence.
ACCESSION   DASQWN010000387 DASQWN010000000
VERSION     DASQWN010000387.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2084)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2084)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2084
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_826457"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..691
                     /locus_tag="VE686_07370"
     CDS             <1..691
                     /locus_tag="VE686_07370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015927008.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="RibD family protein"
                     /protein_id="HYY84306.1"
                     /translation="EFSAVFAPFACGTPERPFVVAQIGQSLDGRVATTSGDSKYINGA
                     AALDHLHRMRAHVDAVVVGVGTVVADDPQLTVRRVAGRSPARVVIDPRGRMPSRAQWL
                     ADDGARRCVVRSEAGEDSACDGIETIAVAASGSRLCPHAIVAELGRRGFARILLEGGP
                     GTISGFLEAGAIDRLHVLVAPVLIGSGRSALDLHPIPALADALRPSCSVYPLAGGEAL
                     FDCDLRRTAEE"
     gene            694..1242
                     /locus_tag="VE686_07375"
     CDS             694..1242
                     /locus_tag="VE686_07375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012332225.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0022904 - respiratory electron transport
                     chain [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome b"
                     /protein_id="HYY84307.1"
                     /translation="MSDSYSGAQKTLHWTMAVLIVLTIPLGISLTRFEGSWMDALYEL
                     HKSVGLVILTLAAIRIAVRTRRGAPPLVEGLPAWQRAAAYLSHYALYVLIVLVPVTGW
                     TATSIGYPPVRLFWTIPVTLPFAHDEKLAERIYAVHDVLAYTLAGIVAVHVGAALYHH
                     FVRRDRTLLRMWPGTGDRPHAG"
     gene            1299..>2084
                     /gene="dapD"
                     /locus_tag="VE686_07380"
     CDS             1299..>2084
                     /gene="dapD"
                     /locus_tag="VE686_07380"
                     /EC_number="2.3.1.117"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015927721.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008666 -
                     2,3,4,5-tetrahydropyridine-2,6-dicarboxylate
                     N-succinyltransferase activity [Evidence IEA];
                     GO_process: GO:0009089 - lysine biosynthetic process via
                     diaminopimelate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2,3,4,5-tetrahydropyridine-2,6-dicarboxylate
                     N-succinyltransferase"
                     /protein_id="HYY84308.1"
                     /translation="MSDADLARTIDAAWEDRAKVDASTKGPVREAVEEALQLLYDGRA
                     RVAEKDASAWRVNQWLKKAVLLSFRLNDMGVIEGGPGGAAWWDKVASKFQGWGENRFR
                     AAGFRAVPGAIVRRGAYVGPNVVLMPSFVNLGAYVGEGTMVDTWATVGSCAQIGKHVH
                     LSGGVGIGGVLEPLQANPTIIEDNCFVGARSEVVEGVVVGEGSVLSMGVFISASTKIV
                     DRETGETFSGRVPPYSVVVPGTLPGKALPDGSPGPSLYCAVIVK"
BASE COUNT          282 a          728 c          730 g          344 t
ORIGIN      
        1 cgaattcagc gccgtcttcg cacctttcgc gtgcggaacg ccggagcgcc ccttcgtggt
       61 cgcgcagata gggcaatccc tcgacggccg ggtggccacg acgagcggag attcgaagta
      121 catcaacggc gcggcggcgc tagatcatct ccatcgcatg cgggcccacg tggacgccgt
      181 ggtcgtcggc gtcgggaccg tcgtcgccga cgacccgcag ctgacggtca gaagggtggc
      241 cgggcgcagc ccggcgcgcg tggtgatcga cccgcgcggg cggatgccgt cccgggcgca
      301 atggcttgcg gacgacgggg cgcggcgttg cgtggtgcgc agcgaggccg gcgaagacag
      361 cgcctgcgac ggcatcgaga ccattgcggt ggcggcgagc ggctcacgtc tttgccctca
      421 cgccatcgtg gccgaactcg gccggcgggg atttgcgcgc atcctgctcg agggcgggcc
      481 cggcaccatc tcggggtttc tcgaggccgg cgccatcgac aggctgcacg tcctcgtcgc
      541 cccggtcctg atcggttcgg gacgatccgc gctcgacctt cacccgatcc cggctctcgc
      601 cgacgcgctc cggccatcgt gctccgtcta cccgcttgcc ggcggcgaag cccttttcga
      661 ctgcgacctg cgcaggactg cggaggaatg aggatgtcgg acagctactc gggggcgcag
      721 aagacgctgc attggaccat ggcggtgctg atcgtgctca cgatcccgct cgggatatcg
      781 ctcacccggt tcgagggctc gtggatggac gccttgtacg agctgcacaa gtccgtcggg
      841 ctcgtgatcc tcacgctcgc ggcgatccgc atcgccgtgc gcacgcgccg gggcgcgccg
      901 ccgctcgtcg aagggctgcc ggcttggcag cgcgccgcgg cctacctgtc gcactatgcg
      961 ctctacgtgc tgatcgtcct ggtgccggtc accggctgga cggcgacctc catcggctac
     1021 ccgcccgtgc gactgttctg gaccatcccg gtgacgctgc cgtttgccca cgacgagaag
     1081 ctcgccgagc ggatttacgc cgtgcacgac gtgctcgcct acacgctcgc cggcatcgtc
     1141 gccgtccacg tcggcgctgc gctctaccat cacttcgtgc gtcgcgaccg cacgctcctg
     1201 cgcatgtggc ccgggacggg tgaccggccg cacgcgggat gacagggccg ggcgccgttg
     1261 ctaagcacgc gcggccttcc ccaaacccga gatctcgcat gtccgacgcc gacctcgccc
     1321 gcaccatcga cgccgcctgg gaggaccgtg ccaaggtcga cgcctcgacc aagggccctg
     1381 tgcgcgaggc cgtcgaggaa gccctgcagc tcctctacga tggccgcgcc cgcgtcgcgg
     1441 aaaaggacgc ctcggcctgg cgcgtcaacc aatggctcaa gaaggcggtg ctgctctcct
     1501 tccgcctgaa cgacatgggc gtcatcgaag gcggccccgg tggtgcggcc tggtgggaca
     1561 aggtcgcgtc caagttccag ggctggggcg agaaccgctt tcgagccgcc ggcttccggg
     1621 ccgtgcctgg cgccatcgtg cggcggggcg cgtacgtggg gccgaacgtc gtgctcatgc
     1681 cctcgttcgt gaacctcggc gcctacgtgg gcgagggcac catggtggac acctgggcga
     1741 cggtcggctc gtgcgcgcag attggcaagc acgtgcacct ctccggtggc gtcggcatcg
     1801 gcggcgtgct cgagcccctg caggccaatc cgaccatcat cgaggataac tgctttgtcg
     1861 gcgcgcgttc cgaggtggtc gagggcgtgg tcgtgggcga gggctcggtc ttgtccatgg
     1921 gcgtgttcat ctcggcctcg accaagatcg tcgaccgcga gaccggcgaa acgttcagcg
     1981 ggcgggtgcc gccctactcg gtcgtcgtgc cgggcacgct ccccgggaag gcgctgccgg
     2041 acggctcccc tggcccgtcg ctctactgcg ctgttatcgt gaag
//
LOCUS       DASQWN010000388         2601 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1357930, whole genome shotgun sequence.
ACCESSION   DASQWN010000388 DASQWN010000000
VERSION     DASQWN010000388.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2601)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2601)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2601
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1357930"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..870)
                     /gene="rho"
                     /locus_tag="VE686_07385"
     CDS             complement(<1..870)
                     /gene="rho"
                     /locus_tag="VE686_07385"
                     /EC_number="3.6.4.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020173979.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008186 - ATP-dependent activity, acting
                     on RNA [Evidence IEA];
                     GO_process: GO:0006353 - DNA-templated transcription
                     termination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcription termination factor Rho"
                     /protein_id="HYY84309.1"
                     /translation="MREVKLQDLKTKTPAELLSFAEEVEVENASTMRKQELMFAILKQ
                     LAAREVEIIGAGVVEVLQDGFGFLRSPDSNYLPGPDDIYISPSQIRRFGLRTGDTVDG
                     PIRGPKDGERYFALLKVNTINFEDPEKIKHKVHFDNLTPLYPDERLKLEIEDPTKKDY
                     SARIIDIVAPIGKGQRGLIVAPPRTGKTVLLQNLAQSIASNHPECYLIVLLIDERPEE
                     VTDMSRSVKGEVVSSTFDEPATRHVQVAEMVIEKAKRLVEHGRDVVILLDSITRLGRA
                     YNTVVPSSGKVLTG"
     gene            complement(1071..1493)
                     /gene="hemJ"
                     /locus_tag="VE686_07390"
     CDS             complement(1071..1493)
                     /gene="hemJ"
                     /locus_tag="VE686_07390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015663368.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protoporphyrinogen oxidase HemJ"
                     /protein_id="HYY84310.1"
                     /translation="MYLWIKAFHVIAVIAWMAGMLYLPRLFVYHCDAQKGSVESETFK
                     VMERRLLKAIINPAMIVAWVLGLYLAWDGGWFRSGWLHGKLALVLGLSAVHGLYARWV
                     RDFAADRNTRPARFYRVWNEVPTLLLVGIVILVIVKPF"
     gene            complement(1497..2522)
                     /gene="hemE"
                     /locus_tag="VE686_07395"
     CDS             complement(1497..2522)
                     /gene="hemE"
                     /locus_tag="VE686_07395"
                     /EC_number="4.1.1.37"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003597707.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004853 - uroporphyrinogen decarboxylase
                     activity [Evidence IEA];
                     GO_process: GO:0006779 - porphyrin-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen decarboxylase"
                     /protein_id="HYY84311.1"
                     /translation="MIKPVLRVLAGEPVWPLPIWVMRQAGRYLPEYRELRAKAGSFLD
                     LCYNPALACEVTLQPIRRFGFDAAILFSDILVIPHALGQDVRFVENEGPRLEPVTSAA
                     DLARLAEVVPLERLAPVFEALGRIKGALPPETTLLGFCGAPWTVASYMIAGKGTPDQA
                     PARLVAYRDPEFMRALIDRLVAASTAYLVAQVDAGAEAVQIFESFGAALPPALFGPLS
                     LEPVGRIVRGLKEARPHAKVIVFVRGGGPNLRRLVDAGIGDALALDWTLDLAAVLPGI
                     PARVATQGNVDPLALIAGGAPLDRGVDAVLAAARGRPHIFNLGHGILPETPVEHVAHM
                     VRRVRGA"
BASE COUNT          427 a          801 c          948 g          425 t
ORIGIN      
        1 gccggtcagc accttgccgg aggacggcac cacggtgttg taggcgcggc ccaggcgggt
       61 gatcgagtcg aggaggatga ccacgtctcg cccatgctcg acgaggcgct tggccttctc
      121 gatcaccatc tcggcgacct ggacgtggcg tgtcgccggt tcgtcgaagg tggaggacac
      181 gacctctccc ttgaccgacc gcgacatgtc ggtgacctcc tcgggccgct cgtctatgag
      241 gagcacgatg aggtagcact cggggtggtt cgaggcgatc gactgggcga ggttctgcag
      301 aaggaccgtc ttacccgtgc gcggcggcgc gacgatcagg ccgcgctggc ctttgccgat
      361 cggcgccacg atgtcgatga tgcgggccga gtagtccttc ttggtcgggt cttcgatctc
      421 gagcttgagc cgctcgtccg ggtagagcgg cgtcaggttg tcgaagtgga ccttgtgctt
      481 gatcttctcc ggatcctcga agttgatcgt gttgaccttg agcagcgcga agtagcgctc
      541 gccgtccttg gggccgcgga tcgggccgtc gacggtgtcg ccggtgcgca ggccgaagcg
      601 gcggatctgc gagggcgaga tgtagatgtc gtccgggccc ggcaggtagt tcgaatcggg
      661 cgagcgcagg aacccgaagc cgtcctgcag gacctcgacg acgccggcgc cgatgatctc
      721 gacctcgcga gcggcgagct gcttgaggat ggcgaacatg agctcctgct tgcgcatggt
      781 gctcgcgttc tcgacctcga cctcctcggc gaagctgagg agctccgcgg gcgtcttggt
      841 cttcagatcc tgaagcttga cctcccgcat gggggagtcg gtgtcggcga cggcaggaag
      901 cacggtgctg ctcacgggga gaatcttttt cagaaacgct cgacaggagg gtcgtttgcg
      961 cgggagacgc ggcggccttg ggcggccaga cgacgcagcg agactgtctt gggaggtggg
     1021 atcttctcca tagcgggttt tgcgccgccg ctcaagccct caggagcccg ttagaacggc
     1081 ttgacgatga cgaggatgac gatgccgacg aggagcaacg tggggacctc gttccacacg
     1141 cgatagaagc gcgcgggtct cgtgttgcgg tcggcggcga agtcgcggac ccagcgggcg
     1201 tagaggccgt gcaccgccga caggcccagg acgagcgcca gcttgccgtg cagccagccg
     1261 gagcggaacc agcctccgtc ccacgcgaga tagaggccga gcacccaggc gacgatcatc
     1321 gcggggttga tgatggcttt cagcagccgc cgttccatga ccttgaaggt ctccgactcc
     1381 acggagccct tctgggcatc gcagtggtac acgaacagcc gcggcaggta gagcatcccc
     1441 gccatccagg cgatcacggc gatgacgtgg aacgccttga tccagaggta catggctcag
     1501 gcgccccgca cgcgtctgac catgtgcgcg acgtgctcga cgggggtctc gggcagaatg
     1561 ccgtggccga ggttgaagat gtgcggccgt ccgcgcgcgg cggcgagcac cgcgtcgacg
     1621 ccgcggtcga gcggggcgcc gccagcgatg agcgcgaggg gatcgacgtt gccctgcgtg
     1681 gcgacccggg cggggatgcc cggcagcacg gccgcgagat cgagggtcca gtcgagtgcg
     1741 agggcatcgc cgataccggc gtcgaccagc cttcgcaggt tcgggccgcc gccacgcacg
     1801 aagacgatca ccttggcgtg tggccgggcc tccttcagcc cgcgcacaat gcgcccgacg
     1861 ggctcgagcg agagcggccc gaagagggca ggcggaaggg ctgcgccgaa gctctcgaag
     1921 atctgtacgg cttcggcacc ggcatcgacc tgcgcaacca ggtaggcggt cgaggccgcg
     1981 acaagccggt cgatgagggc gcgcatgaac tctgggtcgc ggtaggcgac gagccgggcc
     2041 ggagcctggt cgggcgtgcc cttgccggcg atcatgtaac tggcgaccgt ccagggcgct
     2101 ccgcaaaagc cgagcagagt cgtctcaggc ggcagcgcgc ccttgatgcg gccgagggct
     2161 tcgaacaccg gcgccaggcg ctcgagcggc acgacctcgg caaggcgggc gaggtctgcc
     2221 gcggaggtca ccggctcaag gcgcggcccc tcgttctcga cgaagcgaac gtcttggccg
     2281 agcgcgtgcg ggatgacgag gatgtccgaa aacaggatcg ccgcgtcgaa gccgaagcgc
     2341 cggatcggct gcagcgtcac ctcgcaggcg agcgccggat tgtagcagag gtcgaggaag
     2401 gaccctgcct tggcgcgcag ctcgcggtac tcggggaggt agcgccccgc ctgcctcatg
     2461 acccagatcg ggagcggcca gacgggctcg ccggcgagga cgcggaggac gggtttgatc
     2521 atctcggcgc tggttaccgc gttgtccctt ccttcaaaag gaatctttga atctttcttc
     2581 tgttgtttct cttggaggct g
//
LOCUS       DASQWN010000389         3993 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_68902, whole genome shotgun sequence.
ACCESSION   DASQWN010000389 DASQWN010000000
VERSION     DASQWN010000389.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 3993)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3993)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3993
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_68902"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..584)
                     /locus_tag="VE686_07400"
     CDS             complement(<1..584)
                     /locus_tag="VE686_07400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012334132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="proton-conducting transporter membrane subunit"
                     /protein_id="HYY84312.1"
                     /translation="MYHAIVFLPLVGFLIAGLAGRVIGARASELITTGLLFVSCALSW
                     VAFVSVGFGHGGTRVQVAQWFASGDFAVEWAFRVDTLTAMMLIVVTTVSALVHLYSIG
                     YMHEDPHRPRFFAYLSLFTFAMLMLVTADNLVQMFFGWEGVGLASYLLIGFWYEKPSA
                     NAAAMKAFIVNRVGDFGFALGIFLVFVLFNSVAL"
     gene            complement(596..904)
                     /gene="nuoK"
                     /locus_tag="VE686_07405"
     CDS             complement(596..904)
                     /gene="nuoK"
                     /locus_tag="VE686_07405"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010066755.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016651 - oxidoreductase activity, acting
                     on NAD(P)H [Evidence IEA];
                     GO_process: GO:0042773 - ATP synthesis coupled electron
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoK"
                     /protein_id="HYY84313.1"
                     /translation="MVIGLSHYLAVAAILFTLGVFGIFLNRKNVIVILMSVELILLAV
                     NINLVAFSTHLNDITGQVFALLILTVAAAEAAIGLAILVVFYRNRGSIAVEDVNMMKG
                     "
     gene            complement(910..1524)
                     /locus_tag="VE686_07410"
     CDS             complement(910..1524)
                     /locus_tag="VE686_07410"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009491125.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008137 - NADH dehydrogenase (ubiquinone)
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit J"
                     /protein_id="HYY84314.1"
                     /translation="MTALLFYLFSGVLIASAVMVISSRNPVHSVLFLILAFVNAAALF
                     LMMGAEFLAMILVIVYVGAVAVLFLFVVMMLDVDFAALREGFLSYLPIGGLIGVVFLI
                     ELLLVVGGWVMDPNLVQSPTAAAASGEGITNTQAIGRVLYTQYFYFFQAAGLILLVAM
                     IGAIVLTLRERVGVKRQNISMQVRRTQAEAVEVRNVPSRQGIGG"
     gene            complement(1673..2161)
                     /gene="nuoI"
                     /locus_tag="VE686_07415"
     CDS             complement(1673..2161)
                     /gene="nuoI"
                     /locus_tag="VE686_07415"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017486714.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016651 - oxidoreductase activity, acting
                     on NAD(P)H [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoI"
                     /protein_id="HYY84315.1"
                     /translation="MKLDQVARTIFLREFVSATVLALRYFFAPKATINYPFESNYRSP
                     RLRGEHALRRYPNGEERCIACKLCEAICPAQAITIEAGPRRNDGTRRTTRYDIDMVKC
                     IYCGYCQEACPVDAIVQGPNYEFSVETREELLYDKQKLLDNGNRWEREIARNIVADAP
                     YR"
     gene            complement(2193..3221)
                     /gene="nuoH"
                     /locus_tag="VE686_07420"
                     /pseudo
     CDS             complement(2193..3221)
                     /gene="nuoH"
                     /locus_tag="VE686_07420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015930660.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0016651 - oxidoreductase activity, acting
                     on NAD(P)H [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoH"
     gene            complement(3232..>3993)
                     /locus_tag="VE686_07425"
     CDS             complement(3232..>3993)
                     /locus_tag="VE686_07425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012563077.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin-dependent oxidoreductase"
                     /protein_id="HYY84316.1"
                     /translation="LRGAQRPIVIVGQGALSRPDGLAVLALAARAAQAVGAVKEGWNG
                     FGVLHTAASRVGALDLGFVPGEGGLDALAMTEAGALDVLFNLAADEIEVQPGAFVVYQ
                     GTHGDAGAHRADVILPGAAYTEKSGIYVNTEGRVQLANRAAFAPGESREDWAILRALS
                     EYLGQRLPFDSLAQLRKRLFADHPHLARLDAVAPSDVAGAVQALAGLSGTPGREPFES
                     PIVDFYLTNPIARASGVMAECSSIARGRAALQAAE"
BASE COUNT          797 a         1268 c         1378 g          550 t
ORIGIN      
        1 tcgagagcga ccgagttgaa cagcacgaag acgaggaaga tgccgagcgc gaagccgaaa
       61 tcgccgacgc ggttgacgat gaaggctttc atcgccgccg cattggccga cggcttctcg
      121 taccagaagc cgatcaggag gtagctcgcg aggccaactc cctcccagcc gaagaacatc
      181 tggacgaggt tgtcggccgt caccagcatc agcatggcga aggtgaagag cgacaggtag
      241 gcgaagaacc gcggccggtg cggatcctcg tgcatgtagc ctatcgagta gagatgcacg
      301 agcgccgaga cggtggtcac gacgatcagc atcatcgccg tgagcgtgtc gacgcggaaa
      361 gcccactcga cggcgaagtc gcccgacgcg aaccactgcg ccacctgcac gcgcgtgccg
      421 ccgtggccga agccgaccga tacgaaggcg acccacgaca aggcgcacga gacgaacaga
      481 aggcccgtgg tgatgagctc gctcgcgcgc gcgccgatca cgcggcccgc aaggccggcg
      541 atcaaaaacc cgacgagggg aaggaagacg atggcgtggt acatgcccgg gccctttagc
      601 ccttcatcat gttgacgtcc tcgaccgcga tcgagcctcg gttgcggtag aagacgacga
      661 ggatggcgag cccgatcgcc gcctccgcgg ccgccaccgt gaggatcagg agtgcgaaga
      721 cctggccggt gatgtcgttg aggtgggtcg agaacgcgac gaggttgatg ttgacggcga
      781 ggaggatgag ctccaccgac atgagaatga cgatgacgtt cttgcggttg aggaagatgc
      841 cgaagacgcc gagcgtgaac aggatcgccg ccaccgcgag gtagtgggag aggccgatga
      901 ccatagcggc tagcctccga tgccctggcg cgagggcacg ttgcgcacct cgacggcctc
      961 ggcctgggtg cgccgcacct gcatggagat gttctggcgc ttgacgccga cgcgctcgcg
     1021 cagggtgagc acgatggccc cgatcatggc gaccaggagg atcaggccgg ccgcctggaa
     1081 gaagtagaaa tactgggtgt agagcacccg gccgatggcc tgggtgttgg tgatcccctc
     1141 gccgctcgcc gccgcggccg taggactctg caccaggttc ggatccatta cccagccgcc
     1201 gacgacgagc agcagctcga tcaggaacac gaccccgatc aggccgccga tcggcaggta
     1261 gctgaggaag ccctcccgca gggccgcgaa gtcgacgtcg agcatcatca cgacgaacag
     1321 gaacagcacc gcgaccgcgc cgacgtagac gatgaccagg atcatcgcca ggaactcggc
     1381 gcccatcatc aggaacaggg ccgccgcgtt cacgaaggcg aggatcagga acagcacgga
     1441 gtgcaccgga ttgcgcgacg agatcaccat cacggccgag gcgatgagga cgcccgagaa
     1501 gagatagaac aggagggccg tcacggtgtc attcgccttc gggtcagtct tgtatcgctg
     1561 tcgggctcgc ggagcgcggg ccgtctatag ttctcaaggg cgcgaatggc gagtggcgaa
     1621 tggaacaagc cgtccgcacc cattcgcgct tgcgccaaac tcgcccttat cctcaccggt
     1681 acggcgcatc cgcgacgatg ttgcgggcga tctcgcgctc ccagcggttg ccgttgtcga
     1741 ggagcttctg cttgtcgtag agcagctcct cccgggtctc gaccgagaac tcgtagttcg
     1801 gcccctgaac aatcgcgtcc accgggcagg cctcctggca atacccgcag tagatgcatt
     1861 tcaccatgtc gatgtcgtac cgggtggtcc ggcgcgtgcc gtcgttgcgg cgcggcccgg
     1921 cctcgatggt gatggcctgc gccgggcaga tcgcctcgca cagcttgcag gcgatgcaac
     1981 gctcctcgcc gttgggatag cggcggagcg cgtgctcgcc acgcagccgg ggcgagcggt
     2041 agttcgactc gaaggggtag ttgatcgtgg ccttcggcgc gaagaagtag cgcagcgcga
     2101 gcaccgtcgc ggagacgaac tcccgcagga agatggtccg cgcgacctga tcgagcttca
     2161 tagcccggct ccgttcttgg acatggcccc gctcacaccg gcgtcgcggg agcgaggttg
     2221 gtcagcttca acacgaatgc gacgatgacg acggcggcga gagagatggg caggaacacc
     2281 ttccagccga gccgcatgag ctggtcgtag cggtaccgcg gcacaatagc cttggccatg
     2341 gcgatgatga agaacaggaa gctcgccttc agaacgaacc agaagatgcc ggggatccag
     2401 gtaaacggcg cgaaagggat cggcgacagc cagccgccga ggaaaaggat cgatcccacg
     2461 gcgcacatca ccatgatcga cacgtactcg ccgagcatga aaagcaggta cggcgtcgag
     2521 gagtactcga ccgcaaagcc ggccacgagc tccgactcgg cctcgggcag gtcgaagggc
     2581 ggccggttgg tctccgccat ggccgagatc atgaagatca cgaacatggg aaagagccag
     2641 agccagtacc agccgagcat gccgaagcgc gtgtcttgcg cggcgacgat ctgcgacagg
     2701 ttgagcgagc cggcgcagag cagcaccgtg atgatgacga agccgatgga gacctcgtag
     2761 gacaccatct gggcggccga gcgcagggcc ccgaggaatg ggtacttcga gttcgaggcc
     2821 catcagccca tgatgatccc gtacaccccg agcgacgaga tcgcgaagat gtagaggatg
     2881 ccgacgttga tgtcggcgat aacccagccg gggttgaagg ggatcaccgc ccaggaggcg
     2941 agcgccagcg tcgcggtgac gagcggcgcc agcaggaaga tgcccttgtt ggccggcgcc
     3001 gggatcaccg gctccttcaa gacgaacttc aggaggtcgg cgaaggattg cagcaggccg
     3061 aacggaccaa ccacgttcgg gccccggcgc aactgcaccg ccgcccagac cttacggtcg
     3121 gcgtagaggg cgaaggcaat gaagatgagg agggcgacga tcacgaacag gctctggcct
     3181 gcgatgatcg cgacggtcag gagcgcctcg ccgaaggtca tgccgcgctc cctactctgc
     3241 cgcctgcagg gccgcacggc cgcgcgcgat cgacgagcac tcggccatga cgccggacgc
     3301 gcgcgcgatc ggattggtca gatagaaatc cacgatcggg ctctcgaacg gctcccggcc
     3361 cggtgtcccg ctcaagccgg cgagcgcctg cacggcaccg gcgacgtcgc tcggcgcgac
     3421 cgcgtcgagc ctggcaaggt gcggatggtc ggcgaagagg cgcttgcgga gctgcgccag
     3481 cgagtcgaac ggaagccgct ggccgagata ctccgagagg gcgcgcagga tggcccagtc
     3541 ctcgcgcgac tcgcccggcg cgaaggccgc gcggttggcg agctgcacgc gcccttccgt
     3601 gttgacgtag atgccggact tctccgtgta ggcggcgccc ggcaggatca cgtcggcccg
     3661 gtgcgcgccc gcgtcgccgt gggtgccctg gtagaccacg aaggcgccgg gctgaacctc
     3721 gatctcatca gcggcaaggt tgaacagcac gtcgagcgct ccggcctccg tcatcgcgag
     3781 ggcatcgagc ccgccctccc ccggcacgaa gccgaggtcg agcgcgccga cccgcgacgc
     3841 cgccgtgtgc agcacgccga agccgttcca gccttccttg accgcgccga cggcctgcgc
     3901 tgcccgcgcc gcgagcgcca ggacggcaag cccgtcgggg cgcgacagag cgccctgccc
     3961 gacgatcacg atgggacgct gggcgccgcg gag
//
LOCUS       DASQWN010000390         4274 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_926820, whole genome shotgun sequence.
ACCESSION   DASQWN010000390 DASQWN010000000
VERSION     DASQWN010000390.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 4274)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4274)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4274
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_926820"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..634
                     /locus_tag="VE686_07430"
     CDS             <1..634
                     /locus_tag="VE686_07430"
                     /inference="COORDINATES: protein motif:HMM:NF018597.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="extensin family protein"
                     /protein_id="HYY84317.1"
                     /translation="LPASAPLPPPRPDRAPPPPKSAPAVPPQATAGDEQCLAALDRLA
                     VAYEHLPALSDGACGSPAPLRVSRLPDGVALSPPSTMTCGTAQALAQWVLDVVLLEAD
                     RAFGKPASAVLIGTSYECRGQNRVAGAKLSEHAFANAVDVMGFALGADKTVSVGLLPP
                     ESPEALFQAAVRTGACRYFTTVLGPGSDPEHATHLHLDLRARKAGFRICQ"
     gene            706..1728
                     /locus_tag="VE686_07435"
     CDS             706..1728
                     /locus_tag="VE686_07435"
                     /EC_number="2.3.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009490987.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016746 - acyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0071972 - peptidoglycan L,D-transpeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0018104 - peptidoglycan-protein
                     cross-linking [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="L,D-transpeptidase"
                     /protein_id="HYY84318.1"
                     /translation="MRKLSYAAGLVLAVLWAGGAEAARKAASKPAPAPLTAEAINAAD
                     LPAAPSDGKRIAPALIKVQVLLDRARFSPGSIDGRGGSNMEKALAAFAAAQGVQGDGK
                     LSREVWDKLVATSPDPAVVEYKIGPEDVKGPFVEKIPRDFEDMAKLDRLGYTSARELL
                     AEKFHMTEDLLAAMNPGRDLDEAGTTILVPNVARPRDQGEKGRVAKIEVDKSGKLARA
                     LDKEGKLVAFYPASIGSDEKPAPSGESKVRAVALNPTYTYNPNYAFKGVKTKEKVTVK
                     AGPNNPVGSAWIDLDIESYGIHGTPEPDRVGKSYSHGCIRLTNWDVQDLARMVQKGTV
                     VQFLDP"
     gene            1902..4049
                     /locus_tag="VE686_07440"
     CDS             1902..4049
                     /locus_tag="VE686_07440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020174162.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EAL domain-containing protein"
                     /protein_id="HYY84319.1"
                     /translation="MPLVVILDDRVTNRNIFARLAASIEEGVEVETYGDPVEALEALA
                     RRTPDLVITDFKMPHMDGAEFIRRFRMRPECADVPVVVLTVYEERSFRLSALEAGATD
                     FLLSPVDHHEFLTRARNLLRLRRQQEIIKSRAFVLERELQESEQTREEVLRDSRERLA
                     QVIDTMPAMISAADREGRCVFVNAYQASIYGLDPHAAMGQDLATLLDDERSRRSRMLD
                     ELVFRSGKALPSFEEEVVDRAGAKRTFLTTKSPLRDSSGQIVHVLTTALDITERKAAE
                     RHLVHIAHHDGLTGLPNRTLLQDRLRREIARARRGDRFLALHLIDLDRFKAINDALGH
                     HAGDELLNAIAGRLKATVREVDTVARLGGDEFAILQTDVARPEDAFELAQRVIETMAQ
                     PFMLGGSEIITGASLGIAMHPTDGHDAEELLKNADLAMYRAKAEGRDTYRHFASHMDS
                     TARQEIALEADLRHAIARREFVLHYQPQIDLRTGRIVGAEALVRWERPGQGLVRPGDF
                     LPLAEETGLIIPINEWVLQEACREAQSWTALGLPSLRIAVNLSPIQFRRQNVRELVVA
                     ALQQTGLPPRLLELELTENIVLDNTAAVTREIRDLQELGVSFSLDDFGTGYSSLAYIK
                     NFPVNRLKIDQCFIRNLKTDPNDAAIVRAVISLGHSLNLEVLAEGVETAEQVAALRAE
                     GCDEVQGFFFSRAVPADEFIALVRRDADAALSA"
BASE COUNT          716 a         1557 c         1385 g          616 t
ORIGIN      
        1 ccttcccgcg agcgccccac tgccgccccc ccgccccgac cgggcgcccc cgccacccaa
       61 gtccgcgccc gccgtgccgc cacaagccac cgccggcgac gagcagtgtc tcgccgccct
      121 ggaccgactt gcggtcgcct atgagcacct gcccgccctg tcggacggcg cctgcgggag
      181 ccccgcgccc ctacgggtca gccgcctccc ggacggggtt gcgctgtcgc cgccctcgac
      241 catgacctgc ggcaccgcgc aggcgctggc ccagtgggtc ctcgatgtcg tgctgctcga
      301 ggccgaccgc gcgttcggca agcccgcctc cgcggtgctc atcggcacct cgtacgagtg
      361 ccgcggccag aaccgcgtcg ccggcgccaa gctgtccgag cacgccttcg cgaacgccgt
      421 cgacgtgatg ggcttcgcgc tcggcgcgga caagacggtc tctgtcggcc tgctgccgcc
      481 cgagagcccg gaggcccttt tccaggccgc cgtgcgcacg ggtgcctgcc gctacttcac
      541 caccgtgctc gggccggggt ccgacccgga gcacgccacg catctccacc tcgatctgcg
      601 cgcccgcaag gccggcttcc gcatctgtca gtgacgggtg cccggaacac gagacgccgc
      661 cggctcttgt agaagcgcgg gctcggccgc tctggagcat ccttcatgcg aaagttgtcg
      721 tacgctgccg ggctggtgct cgcggtcctg tgggccggag gcgccgaggc ggcccgcaag
      781 gcggcctcga agcccgcgcc ggcccccctg accgccgagg ccatcaacgc cgccgacctg
      841 cccgcggctc cgagcgacgg caagcgcatc gctcccgcgc tcatcaaggt gcaggtcctc
      901 ctcgaccgcg ctcgcttctc gccgggcagc atcgacggcc gcgggggcag caacatggag
      961 aaagcgctcg cggccttcgc ggcggcgcaa ggcgtgcagg gcgacggcaa gctctcacgc
     1021 gaggtctggg acaagctcgt ggccacctcg cccgatcccg cggtggtgga gtacaagatc
     1081 ggccccgagg acgtgaaggg gcccttcgtc gagaaaatcc cgcgcgattt cgaggacatg
     1141 gcgaagctcg accggctcgg atacacgagc gcccgcgagc tcctggcgga aaaattccac
     1201 atgacggagg acctgctcgc ggccatgaac cccgggcggg acctcgacga ggcaggcacg
     1261 accatcctcg tgcccaacgt cgcccggccg cgcgaccagg gcgagaaggg ccgcgtcgcc
     1321 aagatcgagg tcgacaaaag cggcaagctc gcccgcgcct tggacaagga gggcaagctc
     1381 gtcgcgttct atcccgcctc catcggcagc gacgagaagc cggcgccctc gggcgagagc
     1441 aaggtccggg ccgtagccct caatccgacc tatacctaca acccgaacta cgcattcaag
     1501 ggtgtcaaga cgaaggagaa ggtgaccgtg aaggccgggc ccaacaaccc ggtcggcagc
     1561 gcctggatcg acctcgacat cgaatcctac ggtattcacg gcacccccga gcccgatcgg
     1621 gtcggcaagt cgtactccca cggctgcatc cggctgacca actgggacgt gcaggacctc
     1681 gcgcgcatgg tccagaaggg gaccgtcgtc cagttcctcg atccctgatc ggtcgcaaaa
     1741 cgccgaaagg cagcaacgcc gccttcagca ttccgcaagg aaataggcgc atcgtcctgc
     1801 acgacgtctt gtcgatcgcg ggcctgcgcc ccggtggacg agcttgagga tcgagtgcgc
     1861 cgcgccgtca ggcggccctc gccagagcag tgccagtgcg aatgccgcta gttgtcatcc
     1921 tcgatgatcg ggtcaccaac cggaacatct tcgcgcggct cgcggcctcg atcgaagagg
     1981 gcgtcgaggt cgagacctat ggcgatcccg tcgaggcgct ggaggctctc gcccggcgca
     2041 cgcccgatct cgtcatcacc gacttcaaga tgccgcacat ggacggcgcc gagttcatcc
     2101 ggcgcttccg catgcgtccc gaatgcgccg acgtgccggt cgtggtgctc acggtgtacg
     2161 aggagcgcag cttccgcctg agcgccctcg aggccggcgc gaccgacttc ctcctgagcc
     2221 cggtcgacca tcacgagttc ctgacccgcg cccgcaatct gctgcgcctg cggcgccagc
     2281 aggagatcat caagagccgc gccttcgtgc tcgagcgcga gctgcaggaa agcgagcaga
     2341 cgcgcgagga ggtcctgcgc gacagccggg agcggctggc ccaggtgatc gacaccatgc
     2401 cggcgatgat cagcgcagcc gaccgcgagg ggcgttgcgt cttcgtcaac gcctaccagg
     2461 cctcgattta cggcctcgat ccccacgccg ccatggggca ggacctcgcg acgctgctgg
     2521 atgacgagcg cagccggcgc agccgcatgc tcgacgagct cgtgttccgc agcggcaagg
     2581 cgctgccgag cttcgaggag gaggttgtcg accgggcggg agccaagcgc accttcctca
     2641 ccacgaaatc ccccctgcgc gacagctcgg gtcagatcgt gcacgtgctg acgacggcgc
     2701 tcgacatcac cgaacgcaag gcggccgagc gccacctcgt ccacatcgcc caccacgacg
     2761 gcctcaccgg cctgccgaac cgcacattgc tgcaggaccg cctgcggcgc gagatcgccc
     2821 gggcgcggcg cggcgaccgc ttcctcgccc ttcatctcat cgacctcgac cgcttcaagg
     2881 ccatcaacga tgccctcgga caccatgccg gcgacgagct tctgaacgcc atcgccgggc
     2941 gcctgaaggc gacggtgcgg gaagtcgaca cggtcgcgcg cctcgggggc gacgagttcg
     3001 ccatcctgca gaccgacgtg gcgcggcccg aggacgcctt cgagctcgcg cagcgcgtga
     3061 tcgagaccat ggcgcagccg ttcatgctcg gcggcagcga gatcatcacg ggggcaagcc
     3121 tcggcatcgc catgcatccg acggacgggc atgacgccga ggagctgctc aagaacgccg
     3181 acctcgccat gtaccgcgcc aaggcggaag ggcgggacac gtaccggcat ttcgcgtcgc
     3241 acatggacag cacggcgcgc caggagatcg cgctcgaggc ggacctgcgc catgccatcg
     3301 cccggcgcga attcgtgctg cactatcagc cccagatcga tctccgcacc gggcgcatcg
     3361 tcggcgccga ggcgctcgtg cgctgggagc ggcccggcca gggcctcgtg cggccgggcg
     3421 acttcctccc cctcgccgag gaaaccggcc tcatcatccc catcaacgaa tgggttctgc
     3481 aggaagcctg ccgcgaggcg cagagctgga cggcgctcgg cctgccctcg ctgcgcattg
     3541 ccgtgaacct ctcgccgatc cagttcaggc gccagaacgt ccgcgagctc gtcgtcgcgg
     3601 cgctgcagca gacagggctg ccgccgcggc tgctcgagct cgagctcacc gagaacatcg
     3661 tgctcgacaa caccgccgcg gtcacgcggg agatccgcga cctgcaggag ctcggcgtct
     3721 cgttctcgct cgacgacttc ggcaccggct attcgtcgct cgcctacatc aagaatttcc
     3781 ccgtcaaccg cctcaagatc gaccagtgct tcatccgtaa cctcaagacg gacccgaacg
     3841 atgcggccat tgtgcgggcc gtgatcagcc tcgggcacag cctcaacctc gaggtcctgg
     3901 ccgaaggcgt cgagacggcc gagcaggtgg cggcgctgcg cgccgagggc tgcgacgagg
     3961 tccagggatt tttcttcagc agggccgttc cggccgacga gttcattgcg ctcgtcaggc
     4021 gcgacgccga tgccgcgctc agcgcgtagg caggtttttc agaagacgcc ggggtcctcg
     4081 atgggggcgc cggatttatt gcgagcacgt agaatgattt tcgacaaaaa ggaccgcacc
     4141 acgcgcttgt ccgtggggca gcggatcgcc gcgttctgga agcatccaaa ccgcgagcac
     4201 gagatgacgg tcaaccgtct cgtaatcagc gcgcttattc tcgcttacct catcgcttcc
     4261 gcgctccagg acgt
//
LOCUS       DASQWN010000391         3456 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_330752, whole genome shotgun sequence.
ACCESSION   DASQWN010000391 DASQWN010000000
VERSION     DASQWN010000391.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 3456)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3456)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3456
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_330752"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..713
                     /locus_tag="VE686_07445"
     CDS             <1..713
                     /locus_tag="VE686_07445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014527144.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="aldehyde dehydrogenase family protein"
                     /protein_id="HYY84320.1"
                     /translation="AGYRRIVLELGGNDPLIVMEDADLDKAADLAVQGATKNSGQRCT
                     AVKRILVVESVADAFVAKVLPRAKALKAGDPMDPATDVGTVINERSAALFQKRVEDAV
                     GLGAELLHGNDRRGALFPPTVVDRVPHDCELVREETFGPVIPIMRVPDDIDAVIRLSN
                     STAYGLSSGVCTNRLDYITRFVSELEVGTVNVWEVPGYRIEMSPFGGIKDSGLGYKEG
                     VVEAMKSFTNVRTYSMPW"
     gene            832..1857
                     /locus_tag="VE686_07450"
     CDS             832..1857
                     /locus_tag="VE686_07450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010975825.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009897 - external side of plasma
                     membrane [Evidence IEA];
                     GO_component: GO:0030288 - outer membrane-bounded
                     periplasmic space [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0033225 - ATPase-coupled
                     2-aminoethylphosphonate transporter activity [Evidence
                     IEA];
                     GO_function: GO:0033226 - 2-aminoethylphosphonate binding
                     [Evidence IEA];
                     GO_process: GO:0033223 - 2-aminoethylphosphonate transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="putative 2-aminoethylphosphonate ABC transporter
                     substrate-binding protein"
                     /protein_id="HYY84321.1"
                     /translation="MKTWLLAGLAVALTLGASAPAQAQKTKLTIYTALENDQLPPFKQ
                     AIEAAVPEADVTWVRDSTGVITARFLAEKDNPRADIVMGLAASSLLVFDKAGLLETYK
                     PKGADALKPQFRPAKEPYTWTGMDAYLGVVCFNTAEAAKDKVATPASWNDLLNPALKG
                     KVVMPHPASSGTGYLMVAGWLQSMGEEAGWKFMDGLHENIAAYLHSGSAPCVQAARGE
                     RVAGLALDMRGASEKTKGAPIEVVVPKEGVGWEVEATAIVKGTKNLEVAKKVADWGTT
                     KGANELYSKTYAIVALPGVQNTPPNYPPNAEPGMIKNDLAWMADNRERVLAEWSKRYD
                     SKAAPKN"
     gene            1862..2959
                     /locus_tag="VE686_07455"
     CDS             1862..2959
                     /locus_tag="VE686_07455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020186329.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009898 - cytoplasmic side of plasma
                     membrane [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0033225 - ATPase-coupled
                     2-aminoethylphosphonate transporter activity [Evidence
                     IEA];
                     GO_process: GO:0033223 - 2-aminoethylphosphonate transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="putative 2-aminoethylphosphonate ABC transporter
                     ATP-binding protein"
                     /protein_id="HYY84322.1"
                     /translation="MSDPLAPVFLRVEQLSKRFGSFTALRSIDLEVRRGEFVCFLGPS
                     GCGKTTLLRVIAGLDRQDEGRIEIAGRDVSHSPPAARDFGIVFQSYALFPNLTVAQNV
                     GYGLVNGRRPAAEVKRRVEELLALVGMPEQTAKYPVQLSGGQQQRVALARALATSPGL
                     LLLDEPLSALDAKVRVRLRDEIRAVQKRLGVTTVMVTHDQEEALAMADRIVVMNHGAI
                     EQVGTPEEIYRAPASPFVADFVGHMTFLDAVVSGPATIRVGALELRVGNDSPLPPGSP
                     VRVAMRPEDVRTRSIDEQTVNRFEARVERLAFLGAFCRAELSPLVSPHTPISADFSTN
                     AMRDLGIKEGETRAVAFPPEALRVFAAAPPS"
     gene            3005..>3456
                     /locus_tag="VE686_07460"
     CDS             3005..>3456
                     /locus_tag="VE686_07460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020186328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative 2-aminoethylphosphonate ABC transporter
                     permease subunit"
                     /protein_id="HYY84323.1"
                     /translation="MRLVSSRTVREEHVATALIGALVLILLLIVALPLWALLSKSFQD
                     PAGQFVGLANYRIYFTTPALAASLFNSVWVAALTTAIVIPLAFGYAYALTRTCMRLKG
                     VFYAAALVPIFAPSLLSGLALLYVFGNQGFLKGALMGASIYGPIGIVIA"
BASE COUNT          586 a         1151 c         1144 g          575 t
ORIGIN      
        1 aggcggggta ccgccgcatc gtgctagagc ttggcggcaa cgacccgctg atcgtcatgg
       61 aggacgcgga cctcgacaag gcggccgacc ttgccgtcca gggtgcgacc aagaactcgg
      121 gccagcgctg caccgccgtg aagcgcatcc tcgtggtcga gagcgttgcc gacgcgttcg
      181 tcgctaaggt gctcccaagg gcaaaggctc tgaaggcggg cgacccaatg gaccccgcga
      241 cagacgtcgg gaccgtcatc aacgagcgct cggccgcgct cttccagaag cgggtcgagg
      301 atgcggtcgg attgggagcc gagctcctgc atggcaacga ccggcgcggc gcgctcttcc
      361 cgccgacggt tgtcgatcgc gtgccgcacg actgcgagct cgtccgggag gagacattcg
      421 gacccgtcat cccgatcatg cgggtgccgg acgacatcga cgccgtcatc cgcctgtcaa
      481 attccacggc ctatggactg tcgtcgggcg tgtgcacgaa ccggctggac tacattaccc
      541 gcttcgtctc ggagctcgag gtgggcaccg tcaacgtgtg ggaggtgccc ggctaccgca
      601 tcgaaatgtc cccgttcggg ggcatcaagg actccggcct cggctacaag gagggcgtgg
      661 tcgaggccat gaagagcttc accaacgtgc gcacgtattc gatgccgtgg tgagggatgg
      721 ccggagcggc acggaattcg cttgcggcac gacggcgagc gggctgtact cgccgcggcg
      781 gcgaacgctc cttccgggtt ctcggagagg caataacaga ggggatggac gatgaagacc
      841 tggctgctgg ccggactggc cgtcgcgttg acgctcgggg caagtgctcc agcgcaagct
      901 cagaagacca agctcacgat ttacacggcg ctcgagaacg accagctgcc accgttcaaa
      961 caggccatcg aggccgccgt gcccgaagcc gacgtgacct gggtgcgcga ttcgacgggc
     1021 gtcatcacgg cgcggttcct cgccgagaag gacaacccgc gcgccgacat cgtcatgggc
     1081 ctcgcggcgt cgagcctgct tgtgttcgac aaggccggct tgctcgagac gtacaagccg
     1141 aaaggcgccg atgcgctgaa gccgcagttc cggcccgcca aggagcccta cacctggacc
     1201 ggcatggacg cgtacctcgg cgtcgtctgc ttcaacacgg ccgaagcggc aaaggacaag
     1261 gtcgcgacgc ccgcatcctg gaacgacctg ctcaaccccg ccctgaaggg caaggtggtc
     1321 atgccgcatc ccgcttcttc cgggaccggc tacctcatgg tcgcgggttg gctccaaagc
     1381 atgggcgagg aggccggctg gaagttcatg gacgggctgc atgagaacat cgcggcgtac
     1441 ctccactccg gctccgcacc gtgcgtgcag gcggctcggg gcgagcgcgt cgctggcctc
     1501 gccctcgaca tgcgtggcgc gtccgaaaag accaaaggcg cgccgatcga ggtcgtggtg
     1561 ccgaaagagg gtgtcggctg ggaagtcgag gccactgcga tcgtgaaggg cacgaagaac
     1621 ctcgaagtcg cgaagaaggt cgcggactgg gggacgacga agggcgcgaa cgagctctat
     1681 tcgaagacct acgccatcgt ggcgctgccg ggcgtccaga acacgccgcc gaactatccg
     1741 ccgaatgcag agcccggaat gatcaagaac gacctcgcct ggatggcgga caatcgcgag
     1801 cgcgtgctcg cggaatggtc gaagcgctac gactccaagg cagcaccgaa gaactagccc
     1861 catgtcggac ccgctcgccc cggttttcct gcgagtcgag cagctgtcga agcgattcgg
     1921 cagcttcacg gccttgcggt ccatcgacct cgaggtgcgc cggggcgagt tcgtctgctt
     1981 cctgggaccg tccgggtgcg gtaagactac gctcctgcgc gtcatcgcgg gtctcgaccg
     2041 acaggatgag ggaaggatcg agatcgcagg gcgagacgtg tcgcattcgc ctccggcggc
     2101 tcgcgacttc ggcatcgtct tccaatccta cgcgctgttc ccgaacctca cggtcgcgca
     2161 aaacgtcggg tacggcctcg tcaatgggcg acgcccggcc gcggaggtga agcgccgcgt
     2221 cgaggaactc ctcgccctcg tcgggatgcc cgaacagacc gctaagtacc cggttcagct
     2281 ctcgggtggg cagcagcagc gcgtagccct tgcgcgcgcg ctcgcgacct cgccggggct
     2341 cctcctcctc gacgagccgt tgtccgcgct cgacgccaaa gtccgtgtgc gcctgcgcga
     2401 cgagatccga gcggtgcaga agcggctcgg ggtgaccacc gtcatggtga cgcacgacca
     2461 ggaggaagcc ctggccatgg ccgatcggat cgtggtcatg aatcacgggg cgatcgagca
     2521 ggtcggcacg ccggaggaga tttaccgagc ccccgcgagt ccgttcgttg ccgacttcgt
     2581 tggccacatg actttcctgg acgccgtggt gtccggaccg gcaacgatcc gcgtcggcgc
     2641 gctcgagctt cgcgttggca acgatagccc gctccccccg ggcagccccg tccgcgtcgc
     2701 tatgcgtccg gaggacgtgc gcacgcgcag catcgacgag cagacagtta atcggttcga
     2761 ggctcgcgtc gagcgcctcg cattcctggg cgcgttctgc cgggccgagc tctcgccatt
     2821 ggtctcgccg cacacaccca tatctgctga cttctcgacc aatgccatgc gcgacctcgg
     2881 catcaaggag ggggagacgc gggcggttgc ctttccgccc gaggcgctgc gcgtcttcgc
     2941 cgccgccccg cccagctgag gcacagccat ggcggaggtg gtagtggacg ctcctgcgcg
     3001 cccgatgagg ctcgtatcct cccgcacggt gcgcgaggaa cacgtcgcta cggcgctgat
     3061 cggcgccctc gttctcatcc tcctgctcat cgttgcgctg ccgctttggg cccttctgtc
     3121 gaagagcttc caggacccag ccggccagtt cgtcggcctt gcgaactacc gcatctattt
     3181 caccacgccg gcactcgcgg cctcgctatt caacagcgtg tgggtcgccg ccttgacgac
     3241 ggcaatcgtc atcccgctcg ccttcggata tgcctacgcg ctgacccgca cgtgcatgcg
     3301 gctgaagggg gttttctacg cggccgcgct tgtgccgatc ttcgcccctt ccctgctatc
     3361 cggcctcgcg cttctctatg tgtttggaaa ccagggcttc ctcaaaggcg cgctgatggg
     3421 cgcctcgatc tacggcccga tcgggatcgt catcgc
//
LOCUS       DASQWN010000392         2458 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1457781, whole genome shotgun sequence.
ACCESSION   DASQWN010000392 DASQWN010000000
VERSION     DASQWN010000392.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2458)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2458)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2458
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1457781"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1223
                     /locus_tag="VE686_07465"
     CDS             <1..1223
                     /locus_tag="VE686_07465"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY84324.1"
                     /translation="SGAEPYNPAVFPAESEQFYSRLVYGAAMDRRGFSFLWSKGANNE
                     DTGMGKTTMLRQAAKAVNADFGATVLAEAGMRESLIESHRAVAAYASFNTTSVTGVYP
                     ILFAGVEYLADPRNGSGGLSILESLRAKIREDLSLDEDDDAGLRTAILQARRKLGAVL
                     APLRDDVLDAFCTSEDGDFADFLGEVSPASRVRNGLAYFDFAFTVVAAAGIRHLFMFV
                     DQLEDLATTQTVTKAKRTREVGRLRDIIAETEPFISRVHFLFTFHVRAATALDEMWRL
                     NRLPSYDPEDEANQNAVVVLRGIRDVAQVRKLLVTYMDNVRIDPKEEGSLAAFDESAL
                     PVLLEKSGGRPGILLADAHRLIDRAADSELPSIDGEFAADVLGLSGVARASTFGRAGH
                     AEARDSRAIDDLLR"
     gene            1229..2026
                     /locus_tag="VE686_07470"
     CDS             1229..2026
                     /locus_tag="VE686_07470"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY84325.1"
                     /translation="MTTPEWLTLYAEAMYLLARFRPSVPAGWRAGRWWEQTALAAMKV
                     TGAHACQGPGNLTLFGRGSASGVSHETDGAGAGRGWTLMHEAKAYSGRGPSKEELLCF
                     DRKSFDLFVERRRAGEEGYHWRAFVSAGPIGDDLRRYCYLYGVVAIDPELLPLPVLLR
                     MAARPNADLYFEDRILGELVRLGEAACGPFEARYVPEGRRRLCLDLGGMMTAADLNDL
                     LWLQREVTADLLEFVDREWPGYFEERAAEIAGRCGLIAGMYTGRSAA"
     gene            2141..>2458
                     /locus_tag="VE686_07475"
     CDS             2141..>2458
                     /locus_tag="VE686_07475"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY84326.1"
                     /translation="MKLTKQQETRLSEIGSRLLGVIEEVANYAYAKRTGKSSGHSPRA
                     LAGGTNPLVDGSAAQMNLAAINARDRENLVRLEGEPVVARVVVQWKGEEPAREETLYI
                     SRAS"
BASE COUNT          402 a          818 c          840 g          398 t
ORIGIN      
        1 acagcggcgc cgagccctac aacccggcgg tcttccccgc cgagagcgag cagttctatt
       61 cgcgcctcgt ctacggcgcg gcgatggacc ggcgcggctt cagcttcctc tggtcgaagg
      121 gggcgaacaa cgaggatacc ggcatgggca agacgaccat gctccggcag gccgctaagg
      181 cggtcaacgc cgacttcggc gctacggtcc tcgccgaggc cgggatgcgg gagtcgctca
      241 tcgagagcca ccgggcggtc gccgcttacg catccttcaa caccacctcg gtcacgggcg
      301 tctatccgat cctcttcgcg ggcgtcgagt acctggccga cccgcgcaac gggtcgggcg
      361 gcctctccat cctggagagc ctgcgggcga agatcaggga agacctcagc ctcgacgagg
      421 acgacgacgc ggggctgcgc accgcgatcc ttcaggcacg ccgcaagctc ggtgccgtgc
      481 tggcaccgct gcgagacgac gtgctcgacg ccttctgtac gtcggaggac ggcgacttcg
      541 cggattttct gggggaggtc agcccggcga gccgcgtccg caacggcctc gcctacttcg
      601 acttcgcctt cacggtggtg gccgcggccg ggatcaggca cctcttcatg ttcgtcgacc
      661 agcttgaaga cctggcgacg acgcagacgg tgacaaaggc taagcggacg cgcgaggtcg
      721 gccgactgcg cgacatcatc gccgagacgg agccgtttat ctcgcgcgtc cacttcctgt
      781 tcaccttcca cgtccgcgcg gcgacggcgc tcgacgagat gtggcgactc aaccggctgc
      841 cgagctacga ccccgaagac gaagccaacc agaacgcggt cgtcgtcctc cgcgggatcc
      901 gggatgtcgc ccaggtgcgg aagcttctcg tcacctatat ggacaacgtc cgcatcgacc
      961 cgaaggagga ggggtctctc gccgccttcg atgagagcgc gctgccggtg ctgctcgaaa
     1021 agtcgggcgg tcgccccggc attctgctgg ccgacgcgca caggctgatc gaccgcgcgg
     1081 ccgacagtga gctgccgtcg atcgacggcg agttcgcggc tgacgtgctc gggctgagcg
     1141 gagtcgctcg cgcctccacg ttcgggcgcg ccgggcatgc cgaggcgcgc gactctcggg
     1201 ccatcgatga cttgctgagg tgaaggccgt gactactccc gaatggctca cactttacgc
     1261 cgaagccatg tacctgctgg cgcgcttccg cccgtcagtc cccgccggct ggcgcgccgg
     1321 gcgctggtgg gagcagaccg ccttggccgc catgaaggtc accggcgcgc acgcctgcca
     1381 aggccccggc aacctgaccc tgttcggccg cggctccgcc tcgggcgtct cccacgagac
     1441 tgacggcgcg ggcgccgggc gcggctggac attgatgcac gaggccaagg cgtactcggg
     1501 tcgcggcccc tccaaagagg agttactctg tttcgaccgt aagtcgttcg accttttcgt
     1561 cgagcgccgc cgcgcaggcg aggagggata ccactggcgc gcgttcgttt cggcggggcc
     1621 gatcggcgac gacctgcgac gctattgcta cctgtacggc gtggtcgcaa tcgacccgga
     1681 actcctgccg ctgcccgtgc tgctccggat ggcggcgcgg ccgaacgccg acctttactt
     1741 cgaagaccga attctgggcg aactggtcag gctgggcgag gcggcctgcg gacccttcga
     1801 ggcacgctac gtacccgagg gccgacgacg gctctgcctg gacttgggcg ggatgatgac
     1861 ggccgcggat ctcaacgacc tgctgtggct ccagcgagag gttacggccg acctgctcga
     1921 gttcgtcgac cgcgagtggc ccggttactt cgaggagcgc gccgcggaga tagccggccg
     1981 gtgcggtctg atcgccggca tgtatacagg gcggtcggcg gcgtaaccgg tgggcgcagc
     2041 cccggtagga ggcatgtgaa gggacagcgt aatgcccgcc ccttgttctt atgaccggcc
     2101 gtgattccac cggcgcatca agagatggag gctcaggctc atgaagctca caaagcaaca
     2161 ggagacccgg ttgtcggaga taggctcgcg gctcctcggc gtgattgagg aggtcgctaa
     2221 ctacgcctac gccaagcgca ccggcaagtc ttccgggcat tctcctcgcg cccttgccgg
     2281 cgggactaac ccgctggtcg acggctcggc cgcacagatg aacctagctg ctataaacgc
     2341 gcgcgacagg gagaacttgg tgcgacttga aggcgagccg gttgtggcgc gtgtggtcgt
     2401 ccaatggaag ggagaggaac cggcccgcga ggagacgctg tacatctcac gcgcctcg
//
LOCUS       DASQWN010000393         4891 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_132223, whole genome shotgun sequence.
ACCESSION   DASQWN010000393 DASQWN010000000
VERSION     DASQWN010000393.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 4891)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4891)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4891
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_132223"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..164)
                     /locus_tag="VE686_07480"
     CDS             complement(<1..164)
                     /locus_tag="VE686_07480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018270493.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HYY84327.1"
                     /translation="MRNLRRVFDVSKPWLNRMLEGGERQFLTAVADVSFDIASGETFA
                     LVGESGSGKST"
     gene            complement(239..1270)
                     /locus_tag="VE686_07485"
     CDS             complement(239..1270)
                     /locus_tag="VE686_07485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007593847.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HYY84328.1"
                     /translation="MTEPVLSVRDLRVEFVTRRGVLKAIDGISFDIARGEVLGVVGES
                     GAGKSVTGAAVIGLIDPPGRIAAGEIRLSGERIDNLKPEAMRRVRGKRIGMIFQDPLT
                     SLNPLYRVGHQLVETIQTHTNLSGAAARQRAIDLLAEVGIPAPERRIDGYPHEFSGGM
                     RQRVVIALALCAEPELIIADEPTTALDVSVQAQIIALLERLGREHGTAIMLITHDMGV
                     IAEAADRVAVMYSGRIAEIGPVRDVVRNPLHPYARGLMGAIPSLASEADRLVQIPGSM
                     PRLSAIPPGCPFNPRCPHAWERCRVDRPEPIQHDVHRVACHLYDANDPSAEARRAQTH
                     PPAEEGVPA"
     gene            complement(1267..2226)
                     /locus_tag="VE686_07490"
     CDS             complement(1267..2226)
                     /locus_tag="VE686_07490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009490978.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HYY84329.1"
                     /translation="MADTAIVTSPPPKAPAAALRTRFFDSDLWASFKRSKVTMAAAFV
                     TALFFAAAVLAGVLSPQNPFDPAQLELLNSRVPPLWESGGQAPFLLGTDQQGRDMLSA
                     ILYGLRISLVVGVLGVAFSATLGIALGLIAGYFGGAVDTVIMRIADVQLTFPAILIAL
                     LIDGVVKSVLGNQLDAGTVLGVLVFSIGLSFWVQYARTVRGSVMVEKNKDYVAAARLI
                     GLPAPVIMVRHVLPNVLGPVLVIATINLALAVITEATLSFLGSGMPQTMPSLGTLIRI
                     GNNFLFSGEWWIVAFPGIALAGLVLAINLVGDWLRDALNPRLR"
     gene            complement(2233..3213)
                     /locus_tag="VE686_07495"
     CDS             complement(2233..3213)
                     /locus_tag="VE686_07495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007607877.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HYY84330.1"
                     /translation="MIAFVIRRALQALGVLFAVALISFSMFRFAGDPVNQMVGAETPP
                     AERLQIRRSLGLDDPIVVQFGRYVANAAKFEFGISYQFRQPVAQLLKERMPATLELAA
                     VATLLALVFGILMGVYSALRPHSSTAKLFQALSLVGVSLPTFLIGILLIYLFSVTLGW
                     LPSFGRGETRQLGWWSTGLLTTSGLKALIMPSITLGLFQMTLIMRLVRAEMLEVLRTD
                     YIRFARARGLRTRAIHFGHALKNTLVPVITIAGLQLGSVIAFAIITETVFQWPGMGLL
                     FIQAVQNVDIPIMAAYLVLVGLIFVTINLVVDILYTVVDPRLRSSLGQAT"
     gene            complement(3341..4879)
                     /locus_tag="VE686_07500"
     CDS             complement(3341..4879)
                     /locus_tag="VE686_07500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008599281.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HYY84331.1"
                     /translation="MTAAPASAKTFRFAFQGNYQAADPYTLNETFSLGLHAAAYEGLT
                     KRDKDLKIIPGLAERWETVDPLRWRFYLRKGVKFHDGSDFTADDVIFSADRVRAAGSD
                     LKTRIPADSQWVKVDDHTVDVVLKTPNPILHYEWDTWYIMSKKWAEKNNAVAPTSASA
                     TTPSYAALNANGTGPFVLESHQPGVKTVWKPNPSWWGKKEHNIDEAVFTPIGSDATRV
                     AALLSGEVDMMDPVPLQDIQRINSNPTTQVLTGPELRTIHLGFDQRRDELKYSNVKGK
                     NPFKDARVRQAFSKAIDLNLIKDRVMRGASVPAALLISPLLFEGAKDFKIATVDIEGA
                     KKLLAEAGYPQGFEVGMDCPTDRYVNDEAICQAAVGMLARIGVKVNLNAQPKSKYFAK
                     VLATGGYDTSFFLLGWTPGSFDSWNVFANITGCRDDTGKGGPFNFGGYCNPKLDELAT
                     KVLVETDQTKRNALIKEAWTLERADVSHIPLHQQTLAWGVSKKVKIVQRPDNQILFYW
                     ATME"
BASE COUNT          845 a         1518 c         1773 g          755 t
ORIGIN      
        1 gttgacttgc ccgagccgga ctcgccgacg agcgcgaagg tctcgcccga ggcgatgtcg
       61 aacgacacgt cggcgaccgc ggtgaggaac tgccgctcgc cgccttcgag catccggttg
      121 agccagggct tcgacacgtc gaacacgcgg cgcaggttgc gcacctcgac gaaggggcgc
      181 cccgggtcgc gcgatgaagg cgcaactgcg ggacgggcag gcgcggaggc ggccgagctc
      241 acgcgggcac tccttcctcg gccggcggat gggtctgcgc ccgccgcgcc tcggcgctcg
      301 ggtcgttggc gtcgtagagg tggcatgcga cccggtgcac gtcgtgctgg atcggctcgg
      361 gccggtcgac gcggcagcgc tcccaggcgt gggggcagcg cggattgaag ggacagcccg
      421 gcgggatggc ggagaggcgc ggcatcgatc cggggatctg caccagccgg tcggcctcgc
      481 tcgcaagcga cgggatcgcg cccatgaggc cccgcgcata ggggtggagc gggttgcgca
      541 ccacgtcgcg gaccgggccg atctcggcga tgcggccgga gtacatgacg gcgacccggt
      601 cggcggcctc ggcgatgacg cccatatcgt gggtgatcag catgatggcc gttccgtgct
      661 cgcgcccgag gcgctcgagc agggcgatga tctgggcctg gaccgacacg tcgagcgccg
      721 tcgtcggctc gtcggcgatg atgagttccg gctcggcgca gagcgcgagg gcgatgacga
      781 cgcgctggcg catgccgccc gagaactcgt gcggatagcc gtcgatgcgc ctctcggggg
      841 ccgggatgcc gacttcggcg agcaggtcga tcgcccgttg gcgggccgcc gcgcccgaca
      901 ggttggtatg ggtctggatc gtctcgacga gctgatggcc gacgcggtag agcggattga
      961 ggctggtgag cggatcctgg aagatcatgc cgatgcgctt gccgcgaacg cggcgcatgg
     1021 cctcgggctt cagattgtcg atgcgctcgc ccgacaggcg gatctcgccg gcggcgatgc
     1081 gcccgggcgg atcgatgaga ccgatgaccg ccgcgcccgt caccgacttg ccggcaccgg
     1141 attcgccgac gacgcccagg acctcgccgc gggcgatatc gaaggagatg ccgtcgatgg
     1201 ccttcagcac gccgcggcgg gtgacgaact cgacccgcag atcgcggacg gagaggacgg
     1261 gttccgtcat cggagcctcg gattcagcgc gtcgcgcagc caatcgccca cgagattgat
     1321 cgccagcacg agtcccgcga gcgcgatgcc cgggaaggcg acgatccacc actcgcccga
     1381 gaacaggaag ttgttgccga tgcggatcag cgtgccgagg gacggcatgg tctggggcat
     1441 gccggagccg aggaacgaca gggtcgcctc cgtgatgacg gccagcgcaa gattgatggt
     1501 ggcgatgacg agcaccgggc cgagcacgtt ggggaggacg tgccgcacca tgatcacggg
     1561 agccggcagg ccgatgaggc gcgccgccgc gacatagtcc ttgttcttct cgaccatcac
     1621 ggagccacgg acggtgcggg cgtattggac ccagaagctc aagccgatcg agaacaccag
     1681 gactccaagc accgtcccgg catcgagctg gttgccgagg accgatttca ccacgccgtc
     1741 gatgaggagc gcgatcagga tcgccggaaa cgtcagctgg acgtcggcga tgcgcatgat
     1801 cacggtgtcg accgcgccgc cgaaatagcc ggcaatcagc ccaagcgcga tgccgagcgt
     1861 cgccgagaag gcaacgccca gcactccgac gacgagggag atgcgcaggc cgtacaggat
     1921 ggccgacagc atgtcgcgcc cctgctggtc cgtgccgagc aggaacggcg cctggccgcc
     1981 gctctcccat aacgggggga cgcgactgtt caggagttcg agctgcgccg ggtcgaaggg
     2041 gttctgcggc gagagcacgc cggcaagcac cgcggcggca aaaaacaggg cggttacgaa
     2101 ggccgccgcc atcgtcacct tggaacgctt gaagctcgcc cacaggtcgc tgtcgaagaa
     2161 gcgcgtgcgc agggccgccg ctggcgcctt cgggggaggg gaggtgacga tcgcggtgtc
     2221 ggccatgagc gttcaggtcg cctgcccgag ggacgaccgc aggcgcgggt cgacgacggt
     2281 gtagaggatg tccacgacga ggttgatggt cacgaagatg aggccgacca gcaccaggta
     2341 ggcggccatg atcgggatgt cgacgttctg cacggcctgg atgaacagga gccccatgcc
     2401 gggccactgg aacaccgtct cggtgatgat cgcgaaggcg atgacggagc cgagctgaag
     2461 ccctgcgatg gtgatgaccg ggaccagggt attcttcagg gcgtgcccga aatggatggc
     2521 gcgcgtgcga aggccgcggg cgcgggcaaa gcgaatgtag tcggtgcgca gaacctcgag
     2581 catctcggct cgcacaagcc gcatgatcag cgtcatctgg aagagcccga gggtgatcga
     2641 gggcatgatg agcgccttca gcccggacgt ggtgagcagc ccggtggacc accagccgag
     2701 ctgcctcgtc tcgccccgcc cgaacgaggg cagccagccg agcgtcaccg agaaaaggta
     2761 gatgagcagg atgccgatca ggaaggtcgg caggctcacg ccgacgagcg agagggcctg
     2821 gaacagcttg gccgtcgacg aatgcgggcg cagggccgag tacaccccca tgaggatgcc
     2881 gaatacgagg gcgagcagcg tcgccacggc ggcgagctcg agggtggcgg gcatgcgctc
     2941 cttgagcagc tgcgcgacgg gctggcggaa ctggtacgag atgccgaact cgaacttcgc
     3001 cgcattcgcg acgtagcgcc cgaactgcac cacgatggga tcgtcgaggc cgagcgagcg
     3061 gcggatctgc aggcgctccg ccggaggtgt ctcggcgccg accatctggt tcacggggtc
     3121 acccgcgaac cggaacatcg agaacgagat caaggcgacc gcgaaaagga cgccgagagc
     3181 ctgcagcgcg cgcctgatga cgaaggctat cattcaaacg aactcgtcat cctgaccgga
     3241 agggcgccgg cccgcggtcc cgcgcgtcgt ggcccatgat gtcgtggccg ccgctccgaa
     3301 gcgctgccga ggggcagccg agagcggcgg ccgacggccg ttactccatc gtcgcccagt
     3361 agaacaggat ctggttgtcc gggcgctgga cgatcttgac cttcttgctc acgccccagg
     3421 ccagcgtctg ttgatgcagg ggaatgtgcg atacgtcggc ccgctcgagc gtccaggctt
     3481 ccttgatgag ggcgttgcgc ttcgtttgat cggtctcgac gagaaccttg gtggcaagct
     3541 cgtcgagctt cgggttgcaa tagccgccga agttgaacgg accgcccttg ccggtgtcgt
     3601 cacggcagcc ggtgatgttg gcgaacacgt tccaggagtc gaacgagccc ggcgtccagc
     3661 caaggaggaa gaacgaggta tcgtagccgc cggtggccag aaccttcgcg aagtacttac
     3721 tcttcggttg cgcgttgagg ttcaccttga cgccgatgcg cgccagcatg ccgacggcgg
     3781 cctggcagat cgcctcgtcg ttgacgtagc ggtccgtcgg gcagtccatg ccgacctcga
     3841 agccctgcgg gtagccggcc tcggccagga gcttcttcgc gccctcgatg tcgacggtgg
     3901 cgatcttgaa gtcctttgcg ccctcgaaca gcagcggcga gatcaggagc gcagccggca
     3961 ccgaggcgcc gcgcatgaca cggtccttga tcaggttgag gtcgatcgcc ttcgagaagg
     4021 cctggcgcac gcgagcgtcc ttgaaggggt tcttgccctt gacgttcgag tacttcagct
     4081 cgtcacggcg ctggtcgaac ccgaggtgga tggtgcgcaa ctccggcccg gtgagaacct
     4141 gggtcgtggg gttcgagttg atgcgctgaa tgtcctgcag cggcaccggg tccatcatgt
     4201 ccacttcgcc ggagaggagg gcagccacgc gggtcgcgtc ggagccgatc ggcgtgaaca
     4261 ccgcctcgtc gatgttgtgc tccttcttgc cccaccagct cgggttcggc ttccagaccg
     4321 tcttgacgcc gggctggtgg ctttcgagga cgaaggggcc ggtgccgttg gcgttgagcg
     4381 ccgcgtagct cggcgtcgtg gccgaagcgg aggtcggagc gacggcgttg ttcttctccg
     4441 cccacttctt cgacatgatg taccacgtat cccactcgta atgcaggatc gggttcgggg
     4501 tcttgaggac cacgtccacg gtgtgatcgt cgaccttcac ccactgcgag tcggcgggga
     4561 ttcgggtctt caggtcggac ccggcagcgc gcacgcggtc ggccgagaag atgacatcgt
     4621 cggcggtgaa gtcggagccg tcgtggaact taacgccctt gcgcagatag aaacgccagc
     4681 gcagcgggtc gactgtctcc cagcgctccg cgaggccggg gatgatcttg aggtctttgt
     4741 ccctcttcgt caggccttca tacgccgccg cgtgaaggcc gagagagaac gtctcgttca
     4801 gcgtgtaggg gtccgccgcc tggtaattgc cctggaaggc aaagcggaag gtcttggccg
     4861 acgccggcgc tgcggtcacg gcgagtgccg c
//
LOCUS       DASQWN010000394         3306 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_132359, whole genome shotgun sequence.
ACCESSION   DASQWN010000394 DASQWN010000000
VERSION     DASQWN010000394.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 3306)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3306)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3306
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_132359"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..801)
                     /locus_tag="VE686_07505"
     CDS             complement(<1..801)
                     /locus_tag="VE686_07505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009491203.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="family 1 glycosylhydrolase"
                     /protein_id="HYY84332.1"
                     /translation="MATPSFMFATGIENSAPTIDNGRTRIDQMEKCGHYKHWRTDFEL
                     VQDLGISFLRFGPPIHRTYLGPGRYDWEFADLTFGYLKEHEILPIVDLCHFGVPDWIG
                     NFQNPDFPELFAGYAAAFARRFPWVQLYTPVNEMFICATFSAAYGWWNEQMTGDRSFV
                     TALKHIVKANVLAMSRILDIRPDAIFIQSESSEYFHAENPAAIHPAELLNAKRFLSLD
                     LNYGRRVDSEMYEYLMDNGMTRDEYHFFLDNHLKHHCIMGNDYYITNEH"
     gene            complement(856..2400)
                     /gene="metG"
                     /locus_tag="VE686_07510"
     CDS             complement(856..2400)
                     /gene="metG"
                     /locus_tag="VE686_07510"
                     /EC_number="6.1.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018263310.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000049 - tRNA binding [Evidence IEA];
                     GO_function: GO:0004825 - methionine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006431 - methionyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methionine--tRNA ligase"
                     /protein_id="HYY84333.1"
                     /translation="MADEKFYITTAISYPNGAPHIGHAYEVIAADAIARFKRLDGYDV
                     FFMTGTDEHGLKIKQTAARAGQEPKAFVDELAAKFRDMGERMNCSFDRFIRTTDPDHL
                     VSTQELWRRMEVNGDIYLSKYSGWYSVRDEAYFDEGELTKQPDGSFRAPTGTPVEWIE
                     EESYFFRLSAYQERLLAHYETNPDFIGPDARRNEVLSFVRGGLQDLSISRTTFDWGLA
                     VPGAPKHVMYVWVDALNNYLTGTGFPDEASPRRRYWPADVHIIGKDIVRFHAVYWPAF
                     LISAGLPVPRRVFCHGFLFNRGEKMSKSVGNVIDPFSLADTYGVDPLRYFFLREVPFG
                     QDGNYSHEAIVNRINADLANDLGNLAQRSLTMIARNCGAAVPEPGALTAADEALLAQA
                     DALPAKGRAAMSDFALHTMLAEVWAVVAEANRYFASQEPWALRKTDPKRMETVLYVTA
                     ETLRAVGIVAQPVIPTAAGKLLDLLARDPGERMLAHVGQAHRLAAGVALPKPEAIFPR
                     YVEAET"
     gene            complement(2424..>3306)
                     /locus_tag="VE686_07515"
     CDS             complement(2424..>3306)
                     /locus_tag="VE686_07515"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: protein motif:HMM:NF005677.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DNA polymerase III subunit delta'"
                     /protein_id="HYY84334.1"
                     /translation="LAYRMARFLLAQPRTGGPARTLDVAQDHPVQRLIAAQSHPNLAV
                     LRRAAATDKKAASTTIPVDAVRKATGLFASTAADGGYRVCIVDSADDLIAASANALLK
                     MVEEPPPRSIFLIVAHAPQRLVPTIRSRCRRLALRPLAAEDVRRAVSSLGPPWTQAPS
                     EALKDAIAMGEGSVRRTLEMLDEDKIRVVRNVSAALRALPQVDAKAVLSLSETLARKD
                     GEEAYALALDTVLRWAGDELRHKAALGAARLAPLAEACEKVARAAQEADEYNLDRRPL
                     VISMFDDLARAVLRTQA"
BASE COUNT          537 a         1041 c         1173 g          555 t
ORIGIN      
        1 gtgctcattg gtgatgtagt aatcattgcc catgatgcag tgatgcttca ggtgattgtc
       61 caggaagaag tgatattcgt cacgggtcat gccgttgtcc atcaggtact cgtacatctc
      121 cgagtcgacg cggcggccgt aattcaaatc gagcgacaga aagcgcttgg cgttgagcag
      181 ctccgcggga tgaatcgccg cagggttctc ggcatggaaa tactcggatg attcgctctg
      241 gatgaagatc gcatcgggcc ggatgtcgag gatgcggctc atggcaagca cgttcgcctt
      301 gacgatgtgc ttgagcgccg tgacgaacga tcgatcgccg gtcatctgct cgttccacca
      361 gccgtaggcg gccgagaacg tggcgcaaat gaacatctcg ttgaccggcg tatagagctg
      421 cacccacggg aagcggcgcg cgaaggcggc cgcatagccg gcgaaaagct ccgggaaatc
      481 gggattctgg aaatttccga tccagtccgg cacgccgaag tggcacaggt ccacgatggg
      541 caggatctcg tgttccttga ggtatccgaa ggtgagatcg gcgaactccc aatcgtaccg
      601 tcccggcccg aggtacgtgc ggtggatcgg gggtccgaag cgcaggaacg agatgccgag
      661 gtcctggacg agctcgaagt cggtgcgcca gtgcttgtag tggccgcact tctccatctg
      721 atcgatgcgg gtgcgaccgt tgtcgattgt gggtgcgctg ttctcgatcc cggtcgcgaa
      781 catgaacgaa ggggtggcca tcgagcgcct tccgggtgag ccgtcgcgcc ggcgcgcaac
      841 agaacgaggc ggctgtcagg tctccgcttc gacgtaacgc gggaagatcg cctcgggttt
      901 cggcagtgcg acaccggccg caagccggtg cgcctggccg acatgcgcaa gcatgcgctc
      961 gccgggatcg cgagcgagca gatcgaggag cttgccggct gccgtcggga tgaccggctg
     1021 agcgacgatc cccaccgcgc gcagcgtctc ggccgttacg tagagcacgg tctccatgcg
     1081 cttcggatcc gtcttgcgta aggcccaggg ctcctgcgag gcgaaatacc ggttcgcctc
     1141 ggcgacgacg gcccagacct cggccagcat cgtgtgcagg gcgaaatcgc tcatcgccgc
     1201 cctgcctttc gcgggcaacg cgtcggcttg cgcgaggagc gcctcgtcgg cggccgtcag
     1261 cgcgccgggc tcgggaaccg ccgcgccgca gttgcgggca atcatggtca gcgagcgctg
     1321 cgcgaggttg ccgaggtcgt tggcaaggtc ggcgttgatg cggttgacga ttgcttcatg
     1381 cgagtagttg ccgtcctgcc cgaacggcac ctcgcgcagg aagaaatagc gcagcggatc
     1441 gacgccgtag gtgtccgcca gggagaacgg gtcgatgacg ttgccgaccg acttcgacat
     1501 cttctccccg cggttgaaca ggaagccgtg gcagaacacg cgacgcggca ccgggagccc
     1561 cgccgaaatc aggaaggccg gccagtacac cgcgtgaaag cgcacgatgt ccttgccgat
     1621 gatgtggacg tcggccggcc agtagcgccg gcgcgggctc gcctcgtccg ggaagccggt
     1681 gcccgtgaga tagttgttca gcgcgtccac ccagacgtac atcacgtgct tgggcgcgcc
     1741 cggcaccgcg aggccccagt cgaaggtggt gcggctgatg gagaggtcct ggagccctcc
     1801 tctcacgaag ctcaggacct cgttgcggcg cgcgtctgga ccgatgaagt cggggttcgt
     1861 ttcgtaatgg gcgaggagcc gctcctggta cgcggacagg cggaagaagt agctctcctc
     1921 ctcgatccac tcgacagggg tgccggtcgg cgcacggaag ctaccgtcgg gctgcttcgt
     1981 cagctcgccc tcgtcgaaat aggcctcgtc ccggaccgag taccagcccg agtacttcga
     2041 caggtagata tcgccgttga cctccatgcg gcgccacagc tcctgggtcg agaccaggtg
     2101 gtcggggtcg gtggtgcgga tgaagcggtc gaacgagcag ttcatgcgct cgcccatgtc
     2161 gcggaacttc gccgcgagct cgtcgacgaa ggccttcggc tcctggcccg cgcgcgccgc
     2221 cgtctgcttg atcttgaggc cgtgctcgtc cgtgcccgtc atgaagaaca cgtcgtagcc
     2281 gtcgaggcgc ttgaagcgcg cgatggcgtc ggccgcgatg acctcgtagg cgtggccgat
     2341 gtgcggcgcg ccgttcgggt aggagatggc cgtggtgatg tagaacttct cgtcggccat
     2401 gcggtcctga aggcccttcc gcctcacgcc tgcgtccgga ggaccgcgcg cgcgaggtcg
     2461 tcgaacatcg agatcacgag cggccgccgg tcgaggttgt actcgtccgc ctcctgcgcc
     2521 gcgcgggcga ccttctcaca cgcctccgcg aggggcgcaa ggcgagcggc gccgagcgcc
     2581 gccttgtgcc tcagctcgtc tccggcccag cgcaggaccg tgtcgagggc gagggcgtag
     2641 gcctcctccc cgtccttgcg ggcgagggtc tcggataggg acaggacggc cttcgcgtcg
     2701 acctgcggca aggcgcggag cgcggccgag acattgcgca cgacgcgaat cttgtcctcg
     2761 tcgagcatct cgagagtgcg ccggacggac ccctccccca tcgcaatcgc gtctttgaga
     2821 gcctcggacg gagcctgcgt ccacggcggc ccgagcgacg ataccgcgcg tcgcacgtcc
     2881 tcggccgcga ggggccggag ggcgaggcgc cggcagcgcg agcggatggt cggcaccagc
     2941 cgctgcggcg cgtgcgcgac gatgaggaag atcgaccttg gcggcggctc ctcgaccatc
     3001 ttgaggagcg cgttggcgct cgcggcgatc aggtcgtcgg cgctgtcgac gatgcagacg
     3061 cgatagccgc cgtccgccgc cgtcgaggcg aacaggcccg tggccttgcg caccgcgtcg
     3121 accgggatcg tggtcgaggc ggccttcttg tccgtcgcgg ccgcgcgacg caggacggcg
     3181 aggttcgggt gcgactgcgc cgcgatcagc cgctggacgg gatggtcctg ggcgacatcg
     3241 agggtgcgcg ccggcccgcc tgtccgcggc tgcgccagga ggaagcgcgc catgcggtag
     3301 gcgagc
//
LOCUS       DASQWN010000395         2337 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_764384, whole genome shotgun sequence.
ACCESSION   DASQWN010000395 DASQWN010000000
VERSION     DASQWN010000395.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2337)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2337)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2337
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_764384"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..267
                     /locus_tag="VE686_07520"
     CDS             <1..267
                     /locus_tag="VE686_07520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009493458.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit epsilon"
                     /protein_id="HYY84335.1"
                     /translation="KTGFVVATNHRNDGERVLVRGGFADISGTSVTVLAERALPMEEL
                     NPEVLDREILQAEMARDSTHDFAAQQAADAAIAQLREARAALNF"
     gene            complement(320..>2337)
                     /gene="putA"
                     /locus_tag="VE686_07525"
     CDS             complement(320..>2337)
                     /gene="putA"
                     /locus_tag="VE686_07525"
                     /EC_number="1.2.1.88"
                     /EC_number="1.5.5.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011089996.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0003842 - 1-pyrroline-5-carboxylate
                     dehydrogenase activity [Evidence IEA];
                     GO_function: GO:0004657 - proline dehydrogenase activity
                     [Evidence IEA];
                     GO_function: GO:0016620 - oxidoreductase activity, acting
                     on the aldehyde or oxo group of donors, NAD or NADP as
                     acceptor [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA];
                     GO_process: GO:0010133 - proline catabolic process to
                     glutamate [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="bifunctional proline dehydrogenase/L-glutamate
                     gamma-semialdehyde dehydrogenase PutA"
                     /protein_id="HYY84336.1"
                     /translation="RGLDGYPVFTRKAMTDLSYMARADRLLALRPRIFPQFATHNALT
                     VASILERAGGADDYEFQRLHGMGEALYGTLIESVPEVACRTYAPVGGHRDLLAYLVRR
                     LLENGANSSFVSQAADPSVPVAELLVRPADAIGRPEAARHPKLPLPRDLYAPERPNSR
                     GIEFGHRASLESLLAEVKETSDQRLRSQEGRAVLSPIDGHVVGAAVDATVEVADRAIA
                     AAAAGFRAWDAMPAERRAAALARAADAIEERRGLLIHLLQAEGAKTLDDALSEVREAA
                     DFCRYYAVQGRTLFGDGTRLPGPTGESNVLRLRGRGVFVAISPWNFPLAIFVGQVAAA
                     LMAGNAVVAKPAEQTPLVAAEAVRILHEAGVSPEALHLVQGDGRVGARVVEHPDVAGV
                     VFTGSTEVARLINRTLAAKDGAIVPLIAETGGINAMIVDATALPEQVADDVVTSAFRS
                     AGQRCSALRLLCVQEDVAEKVIAIIVGAARELKLGDPRDPSVHLGPVIDGEAKERLDA
                     HVARMKREAVRCWYAGSPSLPQAEEGTRSLFVAPHVFEIARVEALGEEVFGPILHVVR
                     YRADALDELLRGLAASGYGLTLGIQSRIDSSVERIVEALPVGNVYVNRNMIGAVVGVQ
                     PFGGHGLSGTGPKAGGPHYLLRFATEQTLTINTAAAGGNAALIAMEE"
BASE COUNT          356 a          832 c          825 g          324 t
ORIGIN      
        1 aagaccggat tcgtcgtcgc gaccaaccac cgcaacgacg gcgagcgcgt gctggtccgc
       61 ggcggcttcg ccgacatcag cggcacgagc gtcacggtgc tcgccgagcg cgcgctgccc
      121 atggaggagc tcaaccccga ggtcctcgat cgcgagatcc tgcaggccga gatggcccgc
      181 gactcgaccc acgattttgc cgcccagcag gccgccgacg ccgccatcgc gcagctgcgc
      241 gaagccaggg ccgcgctgaa cttttgacgc acatcgcagc cctcatcctg gatgagagcc
      301 taggcgcact ggaccagcct cactcctcca tggcgatcag cgcggcgttg cccccggccg
      361 ccgcggtgtt gatggtcagc gtctgctcgg tggcgaagcg caggaggtag tgcgggccgc
      421 cggccttggg gcccgtgccc gagaggccat ggccgccgaa gggctgcacg ccgacgaccg
      481 cgccgatcat gttgcggttc acgtaaacgt tcccaaccgg cagcgcctcg acgatgcgct
      541 ctacgctgct gtcgatccgc gactggatgc ccagcgtgag gccgtagccg ctcgctgcga
      601 gcccgcgcag gagttcgtcg agcgcgtcgg cgcggtagcg cacgacgtgc aggatcggtc
      661 cgaatacctc ctcgccgagc gcttcgacgc gggcgatctc gaacacgtgc ggcgcgacga
      721 agagggagcg cgtcccctct tccgcctgcg ggagagacgg ggagcccgca taccagcacc
      781 tcaccgcctc gcgcttcatg cgtgcgacat gcgcatcgag gcgctccttc gcctctccgt
      841 cgatcaccgg tccgaggtgg acgctcgggt cgcgcggatc gccaagcttc agctcgcggg
      901 cggcaccgac gatgatggcg atcacttttt cagccacgtc ctcctgcacg catagcaggc
      961 gcagggccga gcagcgctgt cctgccgagc ggaaggcgga agtgacgaca tcgtcggcga
     1021 cctgctcggg gagcgccgtc gcgtcgacga tcatggcgtt gatgccgccg gtctcggcaa
     1081 tcagcggcac gatggcgccg tcctttgcgg ccagcgtccg gttgatgagc cgggccacct
     1141 cggtcgagcc ggtgaacacg acgccggcca catccggatg ctcgacaacg cgcgcgccga
     1201 cgcggccgtc gccctgcacg aggtggagcg cctcggggga cacgccggcc tcgtgcagga
     1261 tgcgcaccgc ttcagccgcg acgaggggcg tctgctcggc gggtttcgcc accacggcgt
     1321 tgccggccat cagcgccgcc gcgacctggc cgacgaagat ggcgaggggg aaattccacg
     1381 gcgagatcgc cacgaagacg ccgcggccgc gcaggcgcag gacgttcgac tcgccggtcg
     1441 gccccggcag gcgcgtgccg tcgccgaaca gggtccggcc ctgcactgcg tagtagcggc
     1501 agaaatccgc cgcctcgcgc acctccgaaa gcgcgtcgtc gagggtcttg gccccctccg
     1561 cctggagcag gtggatcaag agcccgcggc gctcctcgat tgcatccgcc gcccgcgcga
     1621 gcgccgcggc ccggcgctca gccggcatgg catcccaggc tcggaagcct gccgcggctg
     1681 cagcaatggc gcggtcggcg acttcgaccg tcgcgtcgac ggcggcgccg accacgtgcc
     1741 cgtctatcgg gctcagaaca gccctgccct cctgtgagcg aagacgctga tctgaggtct
     1801 ccttcacctc ggccaggagg ctctcgagcg aggcgcggtg gccgaactcg atcccgcggg
     1861 agttgggccg ctcgggcgcg tagagatcgc gggggagggg cagcttcggg tgacgcgccg
     1921 cctcggggcg cccgatcgca tccgccggac gcacgagaag ctccgccacc ggtaccgagg
     1981 gatcggcagc ctgggagacg aacgacgagt tggcgccgtt ctcgaggagc cgccggacca
     2041 ggtacgccag caggtcgcgg tggccgccga ccggggcata ggtgcggcag gcgacctccg
     2101 gcacgctctc gatcagcgtg ccgtaaagcg cctcgcccat gccgtgcagg cgctggaact
     2161 cgtagtcgtc cgctccgccg gcgcgctcca ggatcgacgc cacggtcagc gcattgtggg
     2221 tcgcgaactg gggaaagatc cgcgggcgca gggccagcag ccggtcggcg cgtgccatgt
     2281 acgacaggtc cgtcatggcc ttgcgggtga acaccggata gccgtcgagg ccgcgct
//
LOCUS       DASQWN010000396         5058 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1061192, whole genome shotgun sequence.
ACCESSION   DASQWN010000396 DASQWN010000000
VERSION     DASQWN010000396.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 5058)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5058)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5058
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1061192"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(64..408)
                     /locus_tag="VE686_07530"
     CDS             complement(64..408)
                     /locus_tag="VE686_07530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015928867.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide assembly protein LapA
                     domain-containing protein"
                     /protein_id="HYY84337.1"
                     /translation="MRQFLKALILLPVAIAVVLLAVANRGPVTISFDPFSGGPPEFAA
                     TVPLYAALLVALAIGVVIGGTATWLAQAKHRRVRRQTHREAQRLRAETERLRARTGSQ
                     VPALSTSGARFP"
     gene            complement(422..748)
                     /gene="ihfB"
                     /locus_tag="VE686_07535"
     CDS             complement(422..748)
                     /gene="ihfB"
                     /locus_tag="VE686_07535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020186701.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA];
                     GO_process: GO:0006417 - regulation of translation
                     [Evidence IEA];
                     GO_process: GO:0075713 - establishment of integrated
                     proviral latency [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="integration host factor subunit beta"
                     /protein_id="HYY84338.1"
                     /translation="MIKSELVLKIAEQNPHLYQRDVENIVNAILGTITDALARGDRVE
                     LRGFGAFSIKRRDARNGRNPRTGETVSVSEKVIPVFKTGKEMRIRLNEVDEAAPPARR
                     VAGGGT"
     gene            complement(775..1749)
                     /gene="sppA"
                     /locus_tag="VE686_07540"
     CDS             complement(775..1749)
                     /gene="sppA"
                     /locus_tag="VE686_07540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016847378.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004252 - serine-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0006465 - signal peptide processing
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptide peptidase SppA"
                     /protein_id="HYY84339.1"
                     /translation="MSIAAEMLADRRRLRRKLSFWRVVAFLALIAIVLAGGLAAAGRS
                     PLRGVEQQIARISVDGFIRSDQHRMADLFKRVGESNLVSGVVVSIDSPGGTTTGAEEL
                     FRGIRELAGKKPLVAFVEGTAASGGYITALGADHIVARETSLVGSIGVLFQFPELSKL
                     LATLGIQVEEIKSAPLKAEPSPFHPASPEARQALRDVVMDTYDWFKGLVADRRKIGEA
                     ELATVSSGRVFSGRQGVSLKLVDQIGAERDAVAWLEREKGVAKDLPIRDWRPRTSSQL
                     NLWTGSADAADLLGFEMIASRLRRLASAAEAANLDGLLVLWQPSASEK"
     gene            complement(1937..3652)
                     /gene="rpsA"
                     /locus_tag="VE686_07545"
     CDS             complement(1937..3652)
                     /gene="rpsA"
                     /locus_tag="VE686_07545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003600675.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S1"
                     /protein_id="HYY84340.1"
                     /translation="MSAGLQTRAPSREDFAALLEESFREHEITEGAVVKGRVVAIEKD
                     VAVIDIGAKTEGRVALKEFVGPGRGDTPIVVGDEVEVYVERIENALGEAVISRDKARR
                     EESWVKLEKAFEGNERVTGVIFNQVKGGYTVDLDGAVAFLPRSQVDIRPVRDVTPLMG
                     VPQPFQILKMDRRRGNIVVSRRTVLEESRAEQRSELVANLEEGQVIDGVVKNITEYGA
                     FVDLGGIDGLLHVTDMAWRRVNHPSEVVNIGQTVKVKIIKINHETHRISLGIKQLLAD
                     PWEGIAARYPVDAKLKGRITNITDYGAFVELEPGIEGLIHVSEMSWTKKNVHPGKIVS
                     TSQEVEVQILEVDPVKRRISLGLKQTLQNPWEAFAEKHPVGATVEGEVKNKTEFGLFV
                     GLEGDVDGMVHLSDLDWNRPGEQVIDEFKKGDVVRAQVLDVDVEKERISLGIKQLAGD
                     PFADAGEIRKGQVVTCEILEVKDSGLEVKIVDTDLTTFIRRAELARDRGDQRPERFAP
                     GERIDARVTQFDRKARRVTLSIKALEVAEEKEAMAQYGSTDSGASLGDILGAALKKAK
                     TTDEK"
     gene            complement(3945..4571)
                     /locus_tag="VE686_07550"
     CDS             complement(3945..4571)
                     /locus_tag="VE686_07550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019400516.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-hydroxychromene-2-carboxylate isomerase"
                     /protein_id="HYY84341.1"
                     /translation="MPRRPVLEFWYEFASTYSYLSAMRIEEVADRAGVDVRWRPFLLG
                     PIFAAQGWTSSPFNLFPTKGRHMWRDMEREAARLGLPFRRPDPFPQNSLAAARIALLG
                     ADEPWGAAFSKAVFAAEFGEGRPIADASVLQAVLKSLDLDAGAVIKASQGDANKTRLK
                     STGEEARSRGLFGAPSFLTEDGELFWGNDRLDHAVAWAAGERPAGGGA"
     gene            4708..>5058
                     /locus_tag="VE686_07555"
     CDS             4708..>5058
                     /locus_tag="VE686_07555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019400517.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004055 - argininosuccinate synthase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006526 - arginine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="argininosuccinate synthase domain-containing
                     protein"
                     /protein_id="HYY84342.1"
                     /translation="MSPKRVNKVVLAYSGGLDTSIILKWLQTTYGCEVVTFTADLGQG
                     EELEPARQKALLLGIKPENIFIEDLREEFVRDYVFPMFRANAQYEGLYLLGTSIARPL
                     IAKKQIEIAERVGAD"
BASE COUNT          783 a         1718 c         1729 g          828 t
ORIGIN      
        1 gggaagctca gcgcgtcgtc gatctcggcc gcggtgacga cgcgcatggg cccgcagggg
       61 cgcttaaggg aagcgcgcgc cggaggtcga cagcgcgggc acctgcgatc cggtgcgcgc
      121 ccgcagccgc tcggtctcgg cgcgcaggcg ttgcgcctcg cggtgcgtct gccggcggac
      181 gcggcggtgc ttcgcctgcg cgagccaggt ggcggtgccg ccgatcacca ccccaatcgc
      241 gagcgcgacg agcagcgcgg cgtagagcgg caccgtggcg gcgaactccg gcggccctcc
      301 cgagaacggg tcgaacgaga tcgtcaccgg gccgcggttc gcgaccgcca acagcacgac
      361 ggcgatcgcc accggcaaca ggatcagggc tttcaggaac tgtcgcatcg tcaccgctcg
      421 ttcacgtgcc gccgccggcc accctgcgcg ccggcggggc ggcctcatcc acctcgttga
      481 ggcggatgcg catctccttg ccggtcttga acacggggat gaccttctcg gacacggaaa
      541 cggtctcccc ggtccgcggg ttgcgtccgt tgcgcgcgtc ccgccgcttg atcgagaagg
      601 cgccgaaccc gcgcaactcg acgcggtcgc cgcgcgcgag cgcgtccgtg atggtgccga
      661 ggatggcgtt gacgatgttc tcgacgtcgc gctggtacag atgcggattc tgctcggcga
      721 tcttcaggac gagttcggac ttgatcatgt gcccgcctac cctattgatg ttctttattt
      781 ttctgaagcg gaaggctgcc aaagcacgag cagcccgtca aggttagcgg cctccgccgc
      841 gctcgcgagc cgccgcaggc gtgaggcgat catctcgaag ccgaggagat cggctgcgtc
      901 ggcgctgccc gtccaaaggt tgagctggct cgacgtgcgc ggccgccagt cgcggatggg
      961 gaggtccttg gccacgccct tctcgcgctc tagccaggcg acggcgtcgc gctcggcccc
     1021 gatctggtcg acgagcttca acgacacacc ctggcggccg ctgaacacgc gtccgctcga
     1081 caccgtcgcg agctcggctt cgccgatctt gcgacggtcg gcgacgaggc ccttgaacca
     1141 gtcgtaggta tccatgacga catcgcgcag cgcctggcgc gcttccgggc tggcgggatg
     1201 gaacgggctc ggctcggcct tgagcggggc cgacttgatc tcctcgacct ggatgccgag
     1261 cgtggcgaga agcttcgaca gctcggggaa ctggaacagc acgccgatcg agccgaccag
     1321 cgaggtctcg cgcgcgacaa tgtgatcggc cccgagcgcc gtgatgtagc cgcccgacgc
     1381 ggcagtgcct tcgacgaagg ccaccagggg cttcttgccc gcaagctcgc ggatgccgcg
     1441 gaacagctcc tcggctcctg tcgtggtgcc cccggggctg tcgatggaga ccacgacccc
     1501 cgagacgagg ttcgactcgc ccacgcgctt gaacaggtcc gccatgcggt gctggtcgct
     1561 gcggatgaag ccgtcgacgg aaatgcgggc gatctgctgc tcgacgcctc ggagcgggct
     1621 gcgcccggcg gcggcgaggc cgcctgcgag cacgatggcg atcagggcca ggaatgccac
     1681 cacgcgccag aacgacaact tgcgccgcag ccgacgacgg tcggcaagca tctcggcagc
     1741 aatggacatg actgaaatct tcctcagccc ttggggccca agcgcggcac actagcccca
     1801 gccggaagcg acgggcaagc ggccgggacc ggcgaaaagg cccgcgcggg ggattcccgc
     1861 gcgggccttc agactgggtg acgagatccc ggacgcggct gtcgccgcgt gcgggatgac
     1921 gcgctggaga agcgcgtcac ttctcgtcgg tggtcttcgc cttcttgagc gcggcgccga
     1981 ggatgtcgcc cagcgaggcg cccgagtccg tcgagccgta ctgcgccatc gcctccttct
     2041 cctcggcgac ctcgagcgcc ttgatcgaca gcgtcacgcg gcgcgccttg cggtcgaact
     2101 gcgtcacacg ggcatcgatg cgctcgccgg gcgcgaagcg ctccggccgc tggtcgccgc
     2161 gatcacgggc gagctcggcg cggcggatga aggtcgtcag gtccgtgtcg acgatcttca
     2221 cctcgaggcc tgagtccttc acctcgagga tctcgcaggt gacgacctgg cccttgcgga
     2281 tctcgccggc gtccgcgaac ggatcgcccg cgagctgctt gatgccgagc gagatgcgct
     2341 ccttctcgac gtcgacgtcg agaacctggg cgcgcaccac gtctcccttc ttgaactcgt
     2401 cgatgacctg ctcgccggga cggttccagt cgaggtccga caggtggacc atgccgtcga
     2461 cgtcgccctc gaggccgacg aacagaccga actcggtctt gttcttgacc tcgccctcga
     2521 cggtcgcgcc gaccgggtgc ttctcggcga aggcttccca cgggttctgc agggtctgct
     2581 tcagaccgag agagatgcgc cgcttcacgg gatcgacctc gaggatctgc acctcgacct
     2641 cctgggaggt ggagacgatc ttgccggggt ggacgttctt cttggtccac gacatctcgg
     2701 acacgtggat cagaccctcg atcccgggct ccagctccac gaaggcgcca tagtcggtga
     2761 tgttggtgat ccggcccttg agcttcgcgt cgaccgggta gcgggcggcg atgccctccc
     2821 acggatcggc gaggagctgc ttgatgccga gcgagatgcg gtgcgtctcg tggttgatct
     2881 tgatgatctt gaccttgacg gtctggccga tgttgacgac ctcgctcggg tggttgacgc
     2941 gcctccacgc catatcggtg acgtgcagga ggccgtcgat cccgccgagg tcgacgaagg
     3001 cgccgtactc ggtgatgttc ttgaccacgc cgtcgatgac ctgaccctct tcgaggttgg
     3061 ccacgagctc cgagcgctgc tcggcccggc tctcctcgag gacggtgcgg cgcgacacga
     3121 cgatgttgcc gcggcggcga tccatcttga ggatctggaa cggctgcggc acgcccatca
     3181 gcggggtcac gtcgcgcacc ggccggatgt ccacttggct gcgcggcagg aacgccacgg
     3241 cgccgtcgag gtcgaccgtg tagccgccct tgacctggtt gaagatgacg ccggtgacgc
     3301 gctcgttgcc ctcgaaggcc ttctcgagct tgacccagct ttcctcgcgg cgcgccttgt
     3361 cgcgcgagat gaccgcttcg ccgagcgcgt tctcgatgcg ctcgacgtag acctcgacct
     3421 cgtcgccgac gacgatcggg gtgtcgccgc ggccggggcc gacgaattcc ttgagcgcca
     3481 cgcgcccttc agtcttggcg ccgatgtcga tgacggcgac gtccttctcg atcgcgacga
     3541 cgcgaccctt gacgacggcg ccttcggtga tctcgtgctc gcggaaggac tcttccaaaa
     3601 gcgcagcgaa atcctcgcgg ctcggcgcgc gcgtttgcaa accagctgac atgtatgctc
     3661 ctcgtgccca ttcgggcggc gccggcgggg ttcgtgttgc accccgtccc cctttcgtcg
     3721 ccgcccaagg tgcctcgcgg catctcaagg gctgccgctc ctcatgggag cgggccggcg
     3781 catagcgacg ctagggacgt ctctccggag aggcctgtag cgcataaagg gcgcggcgga
     3841 accgcacctt cgaacgctgt cgtcagcgcc ttgccggatg aagcctcata tatggaagaa
     3901 gccgtccggc ggcaagcaag cattgtcctg cgcggccgat ccgctcaagc tccgccgccc
     3961 gcaggccgct cgcccgccgc ccaggcgacg gcgtgatcga ggcggtcgtt gccccagaag
     4021 agctctccgt cctcggtgag gaagctcggc gctccgaaga ggccgcggga gcgggcctcc
     4081 tcgccggtgg acttcaggcg cgtcttgttg gcgtcgccct gggaggcctt gatgacagcg
     4141 ccggcatcga ggtcgaggga cttgaggact gcctgcagca cgctcgcatc ggcgatcggg
     4201 cggccctcgc cgaactcggc cgcgaagacc gccttgctga aggccgctcc ccacggctcg
     4261 tcggcgccga gaagcgcgat gcgggcggcg gcgaggctgt tctgcggaaa cggatcgggg
     4321 cggcggaacg gcagccccaa gcgcgcggcc tcgcgctcca tgtcgcgcca catgtggcgg
     4381 cccttggtcg ggaagagatt gaaaggcgac gaggtccagc cttgggccgc gaagatgggt
     4441 ccgaggagga acggccgcca ccgcacgtcg acgcccgccc gatcggcaac ctcctcgatg
     4501 cgcatggccg agagatagga ataggtcgac gcgaactcgt accagaactc gagaactggg
     4561 cgacgcggca tcaagatctc cgggacggac tcgcgggcga ggagtgacgc aggattcggg
     4621 cccggccaag gcggttgcgc gcatgggggc acggcctata agcagcgcaa ccttttcccg
     4681 gccccggctg ttccgcagag ttttccgatg tcgcccaagc gcgtgaacaa ggtcgtgctc
     4741 gcctactcgg gcggcctcga cacctcgatc atcctcaagt ggctgcagac cacctacggc
     4801 tgcgaggtcg tgaccttcac ggccgatctc ggccagggcg aggagctcga gccggctcgc
     4861 cagaaggcgc tgctgctcgg catcaagccc gagaacatct tcatcgagga cctgcgcgag
     4921 gagttcgtgc gcgactacgt cttcccgatg ttccgcgcca acgcgcaata cgagggcctc
     4981 tatctcctcg gcacctcgat cgcgcggccg ctcatcgcca agaagcagat cgagatcgcc
     5041 gagagggtcg gcgccgac
//
LOCUS       DASQWN010000397         2248 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1359078, whole genome shotgun sequence.
ACCESSION   DASQWN010000397 DASQWN010000000
VERSION     DASQWN010000397.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2248)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2248)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2248
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1359078"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            182..1255
                     /locus_tag="VE686_07560"
     CDS             182..1255
                     /locus_tag="VE686_07560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014889970.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008171 - O-methyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase"
                     /protein_id="HYY84343.1"
                     /translation="MTTISPDGILQLGTAFWGSKALLSAIELGLFTILAETGPARLDE
                     VRGRLGLHERSARDFLDALVALRMLQRLPDGRYANTAEAEHYLDRAKPSYVGGILEMM
                     NGRLYGFWGNLTEALITGAPQNEARGGGPNPFEAIYADPRRLEMFLGAMTGVSLPTAR
                     AIAAAFPWREHKTFADLGCAEGALPVELARAHPHLTGYGFDLKPVQPVFERYVAGHGL
                     EQRLTFEAGSFFEDALPTVDVLVMGHILHDWGLAQKKLLLRKAFEALPMGGALIIYDA
                     MIDDERRENAWGLLMSLNMLIETPDGFDYTGADCISWMREAGFREVRVERLQGPYSMA
                     VGRKEPSALAGDGTARARPRWPP"
     gene            complement(1411..1887)
                     /locus_tag="VE686_07565"
     CDS             complement(1411..1887)
                     /locus_tag="VE686_07565"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY84344.1"
                     /translation="MFALYVDVLTALEQSALGHASRHSAWLFTIANVLHVLGAAFLVG
                     GIAVFDLKVLRDGGRGAATVGRIAVPLAALGLAVQVPTGLVLLSVEATKLGVNPAFYA
                     KLAFIAVGLANLAVLHGRSGSAMRGDDLPAGARAFAAVSLLAWIVTLVAGRMMAYV"
     gene            complement(1892..>2248)
                     /locus_tag="VE686_07570"
     CDS             complement(1892..>2248)
                     /locus_tag="VE686_07570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018184030.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6152 family protein"
                     /protein_id="HYY84345.1"
                     /translation="HMRSRSRPIIAVTLLLVSGAALAHHGWGSYDASKPLTVRSPVEK
                     LKWENPHVHIDVKHDGAVWEAVLAPPFRMEARGLKPEMLKAGAVVAVEGYPSIKGERE
                     LRAERITVGGKTFELR"
BASE COUNT          364 a          773 c          781 g          330 t
ORIGIN      
        1 gacgtcggcg gaacgacgac caccaccgag gtggcccgct ccgtcatcgc gcaggtcacg
       61 cagcgccgtt gaccgctttt cgtcgcgcgg accggacgaa acagacggcg caatcacgcg
      121 gaaacaggcc tgcgtcatag gagcgtcctc gcctaagagg accgctctcc cgatgacgaa
      181 gatgacgacg atttctcccg acggaatcct gcagctcgga accgccttct ggggctccaa
      241 ggccctcctg agcgcgatcg agctcgggct gttcacgatc ctggccgaga ccgggccggc
      301 acgcctcgac gaggtccgcg ggcgcctcgg cctgcatgag cgctcagcgc gcgacttcct
      361 cgacgccctc gtggcgctcc gcatgctgca gcggctgccg gacggccgct atgccaacac
      421 ggccgaggcg gagcactatc tcgatcgcgc caagccgtca tacgtcggcg gcatcctcga
      481 gatgatgaac gggcgtctgt acggcttctg gggcaatctc acggaagcgc tgatcaccgg
      541 cgcgccgcag aacgaggccc gcggcggtgg ccccaatccg ttcgaggcca tctacgccga
      601 cccgaggcgg ctcgagatgt tcctcggcgc gatgacgggc gtcagcctgc cgacggcgcg
      661 ggccatcgcg gcggcgttcc cttggcggga gcacaagacc ttcgcggacc tcggctgcgc
      721 cgaaggagcg ctgcccgtcg agctcgcccg cgcgcatccg catctgaccg gctacggctt
      781 cgacctgaag ccggtgcagc ccgtgttcga gcgttacgtc gccgggcatg ggctcgagca
      841 gcgcctgacg ttcgaagcgg gcagcttctt cgaggatgcg ctgccgacgg tcgacgtgct
      901 cgtcatgggg cacatcctgc acgactgggg gctcgcccag aagaaactcc ttctgcgcaa
      961 ggccttcgag gcccttccca tgggcggcgc gctcatcatc tacgacgcca tgatcgacga
     1021 cgagcggcgc gagaacgcct gggggctcct catgagcctg aacatgctca tcgagacgcc
     1081 ggacggcttc gactacacgg gcgcggattg catctcgtgg atgcgggagg ccgggttccg
     1141 cgaggtccgg gtcgagcgcc tgcaggggcc gtactcgatg gcggtcggcc ggaaggagcc
     1201 gtcagcgctc gcgggtgacg gaaccgcgcg agcgcgccca cgttggccgc cgtgaggccg
     1261 tgtcgagccc ggcccggcgg gctcgtcgga gcggcgcgtc aagctgaggc gagggttatg
     1321 ttcaggttca ttcggaactt ggtggtgctg cgctgggtct ggcgcctcct gcgacgccgc
     1381 gcgtagcggg gcgccatacg gctgcggccg tcagacgtag gccatcatgc ggccggcgac
     1441 gagggtgacg atccacgcga ggagcgacac cgccgcgaag gctctggcgc ccgcgggcag
     1501 gtcgtcgccg cgcatcgcgc tgccggagcg gccgtgcagg accgccaggt tggcgagccc
     1561 gacggcgatg aaggcgagct tggcgtagaa cgccggattg accccgagct tcgtcgcttc
     1621 gaccgagaga aggaccagcc ccgtcggaac ctggacggcg agtccgagag cggcgagcgg
     1681 cacggcgatg cgcccgaccg tcgccgcacc ccgtccgccg tcgcgcagca ccttgaggtc
     1741 gaagacggcg atgcctccga ccaagaacgc ggcgccgagc acgtgcagca cgttggcgat
     1801 ggtgaagagc cacgccgaat gccggctcgc atgcccgagg gccgactgct cgagcgcagt
     1861 cagcacatcg acgtaaagcg cgaacaagga tctagcgcag ctcgaaggtc ttgccgccga
     1921 cggtgatgcg ctcggcccgc agctcgcgct ccccctttat cgacgggtat ccctcgacgg
     1981 cgaccaccgc gccggccttc agcatctcgg gcttcaaccc gcgcgcttcc atccggaacg
     2041 gaggcgccag cacggcctcc cagaccgcgc cgtcatgctt cacgtcgata tggacgtgcg
     2101 ggttttccca cttcagcttt tcaaccgggc tgcgcaccgt cagcggcttg ctcgcgtcgt
     2161 agctgcccca cccgtgatgc gccaaggcgg cgcccgagac gaggagcagc gttacggcga
     2221 tgatgggacg agagcgggaa cgcatgtg
//
LOCUS       DASQWN010000398         4912 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1061328, whole genome shotgun sequence.
ACCESSION   DASQWN010000398 DASQWN010000000
VERSION     DASQWN010000398.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 4912)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4912)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4912
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1061328"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..879
                     /locus_tag="VE686_07575"
     CDS             <1..879
                     /locus_tag="VE686_07575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007558380.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta fold hydrolase"
                     /protein_id="HYY84346.1"
                     /translation="LYPTSFSAQHPDIEWLIGPDGVLDPGRWFVIIPDMFGNGLSSSP
                     SNTEDWPDLVTAADNVRAQRRLLADEWGIERLHAVYGWSMGAQQAYHWAALFPEQVDR
                     AIINCGSARTATHNRVFLKGLMAVLEAAPEHTGNGRFAAEPIAALRAFGRIYAGWGLS
                     QDFYRAGLHQTALGAPDLDTFLRTDWEERFARRRAADLYAQLRTWEAADISRDERYGG
                     DLSKALAAIEAHVLLMPGETDLYFRVADNEAELAHLRRAELRPIPSIWGHRAGNPATN
                     ADDASFLRKAVRNWIE"
     gene            1229..2536
                     /locus_tag="VE686_07580"
     CDS             1229..2536
                     /locus_tag="VE686_07580"
                     /inference="COORDINATES: protein motif:HMM:NF024808.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HYY84347.1"
                     /translation="MGIDRRSVLRGGAAVGAASLATAVSGWAGAWAQEQPFKPEPGAK
                     LSFLRWGKFLDAEDKATRDNIAAFTKATGVEVTITSEWQDDIQPKVAVAANTGAGPDV
                     VWALHTTPHLVADKLVDVSDVADYIGGKYGGWYPLVEQYGTKQGRWICLPNVVIGVLP
                     VFRISHVKAAGFETFPKDTDAFLTLCQRLKANGHPAGFAFGKAPSDGNAFCNWLLWGH
                     GAKVADESGKVAINSPETIRALEYARALFAAFIEGTAGWNDATNNQSFLGGNISVTNN
                     SVSIYGKARADKLEIANDIDHAPWPVGPTGVPAEFHLVYPMMVFSHTKFPNAAKAFLA
                     FMMEKPQYDLLLAGSAGYISQSVKGFASHPVWDKDARIRVFRDVAERGKAVSWPAPVT
                     QSAASVFADFVVIDMFADVVTGSLSPREAAIKADRRAQRHYRA"
     gene            2553..3485
                     /locus_tag="VE686_07585"
     CDS             2553..3485
                     /locus_tag="VE686_07585"
                     /EC_number="1.1.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013166553.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050661 - NADP binding [Evidence IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent oxidoreductase"
                     /protein_id="HYY84348.1"
                     /translation="MPPPRLPDEQQGRVMTSVGFIGLGIMGREMAAHLVRAGHDVRAY
                     DTRPEAIEELAREGALAARSVGAAAEGADLVITMLPDTPQVEQVVLGTEGLLHNPPAG
                     RLVVDMSTISPSATRRMAGELAKAGIAMLDAPVSGGPAGAKAAKLSIMVGGDAAAVAR
                     ARPILEGMGTTIIHVGESGAGQTVKACNQLVCAMNLQAICEALALGRAAGLDLAKLRD
                     VLLGGAASSWMLQNLGPLMLAKDASAGFRIDLKLKDLRLAGELAFELGVPLPGTALAT
                     SLYLEARAHGEGANGNQALFRVYDRLSNQATDGA"
     gene            complement(3565..3641)
                     /locus_tag="VE686_07590"
     tRNA            complement(3565..3641)
                     /locus_tag="VE686_07590"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(3605..3607),aa:Arg,seq:tct)
     gene            complement(3669..3974)
                     /locus_tag="VE686_07595"
     CDS             complement(3669..3974)
                     /locus_tag="VE686_07595"
                     /inference="COORDINATES: protein motif:HMM:NF016674.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ETC complex I subunit"
                     /protein_id="HYY84349.1"
                     /translation="MPVRIFKQPKNAMQSGMARAKLWTLVFEEDSPREIEPLMGWTSS
                     GDTRQQIRLFFDSKEEAIAYAEREGLPYRVEEPQEPKRRVMSYSDNFKFNRVGQWTH"
     gene            complement(4013..4089)
                     /locus_tag="VE686_07600"
     tRNA            complement(4013..4089)
                     /locus_tag="VE686_07600"
                     /product="tRNA-Pro"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(4053..4055),aa:Pro,seq:tgg)
     gene            complement(4648..>4912)
                     /locus_tag="VE686_07605"
     CDS             complement(4648..>4912)
                     /locus_tag="VE686_07605"
                     /EC_number="2.7.1.107"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017486455.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004143 - ATP-dependent diacylglycerol
                     kinase activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006654 - phosphatidic acid biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0008654 - phospholipid biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0016310 - phosphorylation [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="diacylglycerol kinase"
                     /protein_id="HYY84350.1"
                     /translation="PGALPPAACAPADTVWVAVALIDVVLLVLCVELLNTAIEKLCDH
                     VTPTRHPEIGAIKDVASAAALCSQALGVLVWLLAVATRLVSSP"
BASE COUNT          876 a         1559 c         1651 g          826 t
ORIGIN      
        1 ctgtatccca caagcttttc tgcccagcac ccggatatcg agtggctaat cggtccggac
       61 ggggtcctgg atccgggccg atggttcgta atcattccgg acatgtttgg gaatgggctc
      121 tcgtcgagcc cttcaaacac cgaggactgg ccggacctcg tgaccgcggc ggacaacgtg
      181 cgcgcacagc ggcggctcct cgctgatgaa tgggggatcg agcggctgca tgcggtctac
      241 gggtggtcca tgggtgccca gcaggcctac cactgggctg cgctgtttcc tgagcaagtg
      301 gaccgggcca tcatcaactg cggtagcgct cggacggcca ctcacaatcg cgtattcctg
      361 aaagggctga tggccgtgct cgaggcggca ccggagcaca ccgggaatgg gcgcttcgca
      421 gcagagccaa tcgcggcgct gcgcgctttc gggcgcatct acgcgggctg gggactgagc
      481 caggacttct accgcgcagg gctgcatcag accgcgctcg gcgcgcccga cctggacacg
      541 ttcctgcgca cggactggga ggagcgcttc gcccgccgcc gggccgccga cctctatgca
      601 caactccgca cgtgggaagc cgctgatatc agccgcgatg aacggtatgg cggcgatcta
      661 tcgaaagcgc tcgctgcaat agaggcgcac gtccttctca tgccaggcga gaccgacctc
      721 tacttccggg ttgccgataa cgaggcggaa ctggctcatc ttcggcgcgc agaactccgc
      781 ccgatcccta gcatatgggg gcatcgggcc ggcaacccgg cgacgaatgc agacgacgcg
      841 tcgttcctgc ggaaggcggt gcgcaactgg atcgaatgat gcgccgcccc gaaggcggta
      901 cgcacaagtc aagctgcgta agccggcgac gcacggcttc gctttcagca agtctgctct
      961 gcaccagcac tccaggcatc ggcggattgc cgctatcacc agattccgag ctgacgccgc
     1021 agggacgcga tggcgccact ggtcagggcc tccggagccg cggtgacaag ggcttgtgcg
     1081 tcatctctgt tggcgggcca gcgccaagta gcgacacgtt cggcttgcac acagttctga
     1141 cgtgaaggag tctgttgcca cttgcccgag atcatccgaa aacagcatca gccggcacaa
     1201 agcgcggcgt cttttctggg aggacttcat gggcatcgat cggcgaagtg tgctccgagg
     1261 aggcgcggct gtaggtgccg cgagcctcgc gacggcagtg tccggctggg ccggagcctg
     1321 ggctcaggag cagccgttca agccggagcc tggagcaaag ctgagcttcc ttcgctgggg
     1381 caagttcctc gatgctgagg acaaggccac gcgggacaac atcgccgcat tcaccaaagc
     1441 aaccggcgtg gaggtcacga tcacgagcga atggcaggat gatatccagc cgaaggtcgc
     1501 ggtcgcggcg aacactgggg cggggccgga cgtggtctgg gcactgcata cgacgccgca
     1561 tctcgtcgcc gacaagctcg tggatgtcag cgacgtggcg gactacatcg gcggcaagta
     1621 cggcggctgg tatccgctcg tcgagcagta cgggacgaag caggggcgct ggatctgctt
     1681 gccgaacgtg gtgatcggag tgctcccggt gtttcggatc tcgcacgtca aggcggccgg
     1741 attcgagacg tttccgaagg acaccgacgc ctttctcacg ctgtgtcagc ggcttaaggc
     1801 taacggccac ccggccggct tcgccttcgg gaaggcgccg agcgacggaa acgcgttctg
     1861 caattggctg ctctggggcc acggcgccaa ggtggccgac gagagcggca aggtggcgat
     1921 taacagcccg gagacgatca gagccctgga gtatgctcgg gcgctttttg cggccttcat
     1981 cgaggggacg gctggatgga acgacgcgac gaacaaccag tccttcctcg gcggcaacat
     2041 ttcggtgacg aacaactccg tgtcgatcta cggcaaagcg cgagccgata agctcgagat
     2101 tgccaatgac atcgaccacg caccttggcc cgtcggcccc accggagtgc cggccgagtt
     2161 ccacctcgtc tatccgatga tggtcttctc gcacacgaag ttccctaacg ccgccaaggc
     2221 attcctggcc ttcatgatgg aaaagcccca gtacgatctg ctactagccg gctcggcagg
     2281 gtacatcagc cagtcggtga agggctttgc gagtcacccc gtgtgggaca aggacgcccg
     2341 cattcgcgtg ttccgtgatg tggcggagcg cggaaaggcg gtgtcttggc cggcccccgt
     2401 gacccagtcc gccgcgagcg tcttcgctga cttcgtggtg atcgacatgt ttgccgacgt
     2461 ggtcaccgga tcgctgtcac ctcgcgaagc agccataaag gcggaccgac gggcacaacg
     2521 gcactaccgg gcctgagccc cagccggcgg ggatgccccc gccgcgcctc cctgacgagc
     2581 agcaaggacg cgtcatgaca tcggtcggat tcatcgggct tggcatcatg gggcgcgaga
     2641 tggcggccca tctcgtccgc gcgggtcatg acgttcgcgc gtacgacacc cgtcctgagg
     2701 ccattgagga gcttgcccga gagggagcgc ttgcggctcg cagcgtcgga gctgctgcgg
     2761 aaggcgccga cctcgtcatc accatgttgc ccgacacgcc acaggtggaa caggtggtcc
     2821 tcgggaccga gggccttctg cacaatccgc ccgcggggcg gctcgtggtc gacatgagca
     2881 cgatctcgcc aagcgcaacg cggcgcatgg ccggggagct cgccaaagcc ggcatcgcga
     2941 tgctcgatgc gcccgtcagc ggcggtccgg ccggcgccaa ggccgcgaag ctttccatca
     3001 tggtgggcgg tgacgcggca gcagtggcgc gtgcgcgacc cattctcgaa ggcatgggca
     3061 ctacgatcat ccatgtgggc gagagcggag ccgggcagac cgtcaaggcc tgcaaccagc
     3121 tcgtctgcgc catgaacctg caggctatct gcgaggcgct cgccctcgga cgcgcggcag
     3181 gactcgacct tgccaagctc cgcgacgtgc tgctcggggg cgccgcgtct tcgtggatgc
     3241 tgcagaatct tgggccgctg atgctggcaa aggatgcctc ggcagggttt cgcatcgacc
     3301 tcaagctgaa ggacctgcgg ctggcgggcg agctcgcttt cgaacttggc gtccctttgc
     3361 ccgggacggc gctggcgaca agcctctacc tggaggcacg ggcgcacgga gaaggcgcaa
     3421 acggcaatca ggcgctgttt cgcgtctatg atcggctgag caaccaagcg acggacgggg
     3481 cttagaaccg cggccgtctt caggcgatga gatggctggc cattgatcgc acacgcgatt
     3541 ttggacgcgc cagctctgaa aacctggcga ccccggcagg gctcgaacct gcgacctgcc
     3601 gcttagaagg cggctgctct atccagctga gctacggggc cggacgggcg cgcggcccga
     3661 gcggcgcgtc agtgcgtcca ctgcccgacg cggttgaact tgaaattgtc cgagtacgac
     3721 atgacccggc gcttcggctc ctggggctcc tcgacgcggt acgggaggcc ctcgcgctcg
     3781 gcgtaggcga tcgcctcctc cttcgaatcg aagaacaggc ggatctgctg ccgcgtgtcg
     3841 cccgagctcg tccagcccat aagcggctcg atctcgcgcg ggctgtcctc ctcgaacacg
     3901 agggtccata gcttggcccg cgccatgccg gactgcatgg cgttcttggg ctgcttgaaa
     3961 atccgtacgg gcatcctgtc cgtcccggtt gagctgcacg gcggcgcgcc gatggtcggg
     4021 gcggccggat tcgaaccagc gaccctctgc tcccaaagca gatgcgctac cagactgcgc
     4081 tacgccccga gccatcgaag gccattgatc tgctagtgtt tttggccccg gcccgcaaga
     4141 ggccccaggc acgataaggg aacatagggg acagaagagc ccgcctgtgc tgccgaaagt
     4201 ggccgcgggt cacgagctgc gacgcagttg cacgcgggca ggatgcttca acggtagaac
     4261 aaccagcccg tcgtagctcc ccaggccgat tacctcggat gcgcagcagc ggcggctcga
     4321 ggctgcagag atttccgtcg cgcttgtctc gctggttgag tatgagtccc gatccgcggc
     4381 ctacgccctc gattagcgag gcgccctctc ttgcgacagg ctggcggcag tcttttctct
     4441 catctaacac cgtcggtgcg tgagcgacgc tgctgctccg ctcccctaag agcttggagg
     4501 cacaatgcgc gtggagcgcg ccggttgtgg acaagacgac gcttaagggg cagtccgacc
     4561 gctttcgtag gctagccgag gtccaccgcg catgaaggcc ggccggagct ttctgaccgc
     4621 aacgtggggc taggtgtgcc gcgcagttca aggtgacgag acaagtcgcg ttgccactgc
     4681 taggagccag accagcacgc cgagagcttg cgagcacagg gccgccgcgg atgcgacgtc
     4741 cttgatggcg ccgatctcgg ggtggcgggt cggggtcacg tggtcgcaaa gcttctcgat
     4801 cgcggtgttc aacagctcca cgcagagcac caggaggacg acgtcgatca gcgcgacggc
     4861 aacccacacc gtatcggcgg gcgcgcaggc ggcaggcggg agcgctcccg ga
//
LOCUS       DASQWN010000399         3302 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_764700, whole genome shotgun sequence.
ACCESSION   DASQWN010000399 DASQWN010000000
VERSION     DASQWN010000399.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 3302)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3302)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3302
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_764700"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..723)
                     /locus_tag="VE686_07610"
     CDS             complement(<1..723)
                     /locus_tag="VE686_07610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002714413.1"
                     /note="with YejAEF is involved in resistance to microcin
                     C; Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="microcin ABC transporter permease"
                     /protein_id="HYY84351.1"
                     /translation="MLAYIARRVLLMIPTILGILFISFVIVQFAPGGPVERILAQLQG
                     QDSGASSRVGGGGGDIGSARNLQPGASGDTTGSRYRGAQGLDPQFIKQLEVQFGFDKP
                     AHERFLKMIWDYARFDFGKSYFRDVPVLRLIKEKLPVSITLGLWMTLLSYAVSIPLGI
                     RKAVRDGTHFDVWTSGVVIVGYAIPGFLFAILLIVLFAGGSFWQIFPLRGLTSESWSQ
                     LSLGGKILDYAWHIALPITAMAL"
     gene            complement(731..2596)
                     /locus_tag="VE686_07615"
     CDS             complement(731..2596)
                     /locus_tag="VE686_07615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010687134.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="extracellular solute-binding protein"
                     /protein_id="HYY84352.1"
                     /translation="MTRLTRRDVVLGAAALTASAATGWPSAAAEGEVEAHGLSAFGDL
                     AQPADFKHFPYVNPQAPKGGLLSQQIKNTTGNQNFDTFDTLNIFVLKGDGAAGMDATF
                     DSLMSGTGDEPDAMYGLLARAVRISPDKLTYRFLMRPEARFHDGSRVTARDVAFSMMI
                     LKTKGHPTFRTVLSELVSAEAEGDDVVAVRLSEKRSRDLHLVVAGLPIMSEAYWRGRD
                     FEASTLEAPLGCGAYKVSRFEQGRYIEFERVKDYWGRDLPVNVGSNNFDRIRYEYFRD
                     RQVAFEAFKSGVFNYHAEYTSRIWSTGYDFPAFRDGRVKRDVIERGGAVPSQGWYFNT
                     RREAFKDPRVREALGLAFDFEWTNKNIMFGLYKRLHSYFQNSNMQAEGKPGAEELALL
                     EPFRGKLPEEVFGEPYVPPVSDGSGSDRNLLRRADQLLREAGCKRDGSTLKLPNGKPF
                     EIEFIDFQQSLQPHTQPYQANLKRLGIEARSRIVDAAQYRRRMDEFDFDVATMALGGS
                     LTPGDSLRVVFGSEAAKTPGSRNIGGIADPAIDALIEKIGNAKTRPELELAARCLDRV
                     LRAGRYWVPMWYRSDDWIAYWDAFARPETRPKYGTGAPGTWWWDAEKAKRVGMAG"
     gene            complement(2878..>3302)
                     /locus_tag="VE686_07620"
     CDS             complement(2878..>3302)
                     /locus_tag="VE686_07620"
                     /inference="COORDINATES: protein motif:HMM:NF024934.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0030552 - cAMP binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="Crp/Fnr family transcriptional regulator"
                     /protein_id="HYY84353.1"
                     /translation="KVAFIEHDALIDLCDRFPRLTNALWRETLTDAAIFKEWVLNVGR
                     RDAYAGVAHLICEVVTRMRGVGLVHDGRCAFPMTQNELADAVGISAVHVNRTLQELRA
                     AGLIALSRGKLDLLDWEGLKKAGDFAPDYLYLEEERAA"
BASE COUNT          532 a         1080 c         1172 g          518 t
ORIGIN      
        1 gagcgccatg gcggtgatcg gcagcgcgat gtgccaagcg tagtcgagta ttttgccccc
       61 aagcgaaagc tggctccagc tctcggaagt cagtccgcgc aaggggaaga tttgccagaa
      121 cgatccgccc gcgaagagca cgatgagcag gatggcgaag aggaaccccg ggatggcgta
      181 gccgacgatg acgacccccg aggtccacac gtcgaagtgc gtgccgtcgc gcaccgcctt
      241 cctgatcccg agcgggatcg agaccgcgta ggacaagagc gtcatccaaa gcccgagcgt
      301 gatcgagacg ggcagcttct ccttgatcag ccgcagcacc ggcacgtcgc gaaaatagct
      361 cttgccgaag tcgaagcggg cgtagtccca gatcatcttg aggaagcgct cgtgcgccgg
      421 cttgtcgaag ccgaactgca cctcgagctg cttgatgaac tgcgggtcga gcccctgggc
      481 gccgcggtag cgagacccgg tggtgtcgcc ggaggcgccc ggctgcaggt tgcgggcgct
      541 gccgatatcg ccgccgccgc cgccgacccg cgagctcgcg cccgagtcct gcccctgcag
      601 ctgcgccagg atgcgctcga ccggcccgcc cggcgcgaac tgcacgatga cgaaggagat
      661 gaacagaatc ccgaggatgg tcgggatcat gaggagtacg cgccgggcga tgtaggcgag
      721 catcagcccg tcatcccgcc atcccgacgc gcttcgcctt ctcggcgtcc caccaccagg
      781 tgcccggggc gcccgtgccg tacttgggcc gggtctcggg ccgcgcgaag gcgtcccaat
      841 acgcaatcca gtcgtccgag cggtaccaca tgggtaccca gtagcgcccg gcacggagca
      901 cgcggtcgag gcagcgcgcg gcgagctcga gctccgggcg ggtcttggcg ttgccgatct
      961 tctcgatgag cgcgtcgatg gccgggtcgg cgatgccgcc gatgttgcgc gagcccggcg
     1021 tcttcgccgc ctcggagccg aacaccacgc gaagcgagtc gccgggcgtc agcgagccgc
     1081 cgagcgccat ggtggcgacg tcgaagtcga actcgtccat gcggcggcga tactgcgccg
     1141 catcgacgat gcgcgaccgc gcctcgatgc cgaggcgctt gaggttggcc tggtagggct
     1201 gggtatgcgg ctgcagcgac tgctggaagt cgatgaactc gatctcgaac ggcttgccgt
     1261 tcggcagctt cagcgtgctg ccgtcgcgct tgcagccggc ctcgcgcagg agctggtcgg
     1321 cgcggcgcag gaggttccgg tccgagcccg agccgtccga cacgggcggg acgtagggct
     1381 cgccgaacac ctcctccggc agcttgccgc ggaacggctc cagcagcgcc agctcctcgg
     1441 ccccgggctt gccttcggcc tgcatgttcg agttctggaa gtaggagtgc agccgcttgt
     1501 agaggccgaa catgatgttc ttgttcgtcc actcgaagtc gaaggcgagc ccgagcgcct
     1561 cgcgcacgcg cgggtccttg aaggcctcgc ggcgcgtgtt gaagtaccag ccctgcgacg
     1621 gcacggcgcc gccgcgctcg atcacgtcgc gcttgacgcg tccgtcgcgg aaggccggga
     1681 agtcgtagcc cgtcgaccag atgcgcgagg tgtactcggc gtggtagttg aacacgcccg
     1741 acttgaaggc ctcgaaagcc acctgccggt cccggaaata ctcgtagcgg atgcggtcga
     1801 agttgttgct gccgacgttc acgggcaggt cacggcccca gtagtccttg acgcgctcga
     1861 actcgatgta gcggccctgc tcgaagcggc tgaccttgta ggcgccgcac ccgagcgggg
     1921 cctcgagagt cgaagcctcg aaatcccggc cgcgccaata ggcctccgac ataatgggca
     1981 ggccggcgac gacgaggtgg aggtcgcgcg agcgcttctc ggagagtcgc accgcgacga
     2041 cgtcgtctcc ctccgcctcg gcggagacga gctcggacag cacggtgcgg aaggtcggat
     2101 gacccttggt cttgaggatc atcatcgaga aggcgacgtc gcgggccgtc acccgcgagc
     2161 catcgtggaa gcgcgcctcc ggccgcatga ggaagcggta ggtgagcttg tcgggcgaga
     2221 tgcgcacggc ccgggcgagg agcccgtaca tggcgtccgg ctcgtcgccg gtgccggaca
     2281 tcaaagaatc gaaggtcgcg tccatgccgg ccgcgccgtc gcccttgagc acgaagatgt
     2341 tgagcgtgtc gaaggtgtcg aagttctggt tgccggtggt gttcttgatc tgctgcgaga
     2401 gcaggccgcc tttcggcgcc tgcgggttga cgtatgggaa atgcttgaag tccgcgggtt
     2461 gcgcgaggtc gccgaaggcc gacagcccat gcgcctcgac ttcgccctcc gcggcggcgg
     2521 aaggccaccc ggtcgcggcc gaggcggtca gcgccgcggc gccgaggacg acgtcacgtc
     2581 gggtcagtcg ggtcattggg tctccaggca aaggctcgcg ccccttcgat ccggcgatta
     2641 tgtcggcttt gcggagcaaa cgaaactcac ggcaatctcc ctcccccgct ggcggcggcc
     2701 agcgcgggga gggggcgcac tcgcgcgaag cgcgagccgg ggtgggggcg cgtcatcttg
     2761 gttccgccaa cgcggccggg agcacatcgg tgctcccccc accctcgctc gggctttgcc
     2821 ggagtcgatc cctccccgca cccgctgacg cgggcgggag gaaccgcggc ggctcgatca
     2881 ggcggcgcgt tcttcctcga ggtagagata gtcgggggcg aagtcgccgg cctttttgag
     2941 gccttcccag tcgaggaggt cgagctttcc gcggctgagc gcgatgagcc ccgcggccct
     3001 gagctcctgg agcgtgcgat tgacgtgcac ggcggagatt ccgacggcgt cggcaagctc
     3061 gttctgggtc attgggaagg cgcagcggcc gtcatgcacg aggccgaccc cgcgcatccg
     3121 cgtcaccacc tcgcagatga ggtgggcgac gcccgcgtag gcgtcgcgcc gtccgacgtt
     3181 gaggacccac tccttgaaga tggcggcgtc cgtcagcgtc tcgcgccaga gggcattggt
     3241 caggcgaggg aagcggtcgc acagatcgat cagcgcgtcg tgctcgatga atgccacctt
     3301 gc
//
LOCUS       DASQWN010000400         2827 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1260211, whole genome shotgun sequence.
ACCESSION   DASQWN010000400 DASQWN010000000
VERSION     DASQWN010000400.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2827)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2827)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2827
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1260211"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(95..170)
                     /locus_tag="VE686_07625"
     tRNA            complement(95..170)
                     /locus_tag="VE686_07625"
                     /product="tRNA-Ala"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(135..137),aa:Ala,seq:cgc)
     gene            323..613
                     /locus_tag="VE686_07630"
     CDS             323..613
                     /locus_tag="VE686_07630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011313809.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YggT family protein"
                     /protein_id="HYY84354.1"
                     /translation="MRAILDVLMLALNLYTWIIIAAAVISWLIAFNVVNTRNDFVRSV
                     EAFLYRVTEPVLGPIRRILPNLGGIDVSPIILLLIIFFIQRVIVLYLYPYVP"
     gene            672..1562
                     /gene="folD"
                     /locus_tag="VE686_07635"
     CDS             672..1562
                     /gene="folD"
                     /locus_tag="VE686_07635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012561489.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004488 - methylenetetrahydrofolate
                     dehydrogenase (NADP+) activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional methylenetetrahydrofolate
                     dehydrogenase/methenyltetrahydrofolate cyclohydrolase
                     FolD"
                     /protein_id="HYY84355.1"
                     /translation="MSATLIDGKAQAAALRARVASEVRRLAARDVVPGLAVVLVGADP
                     ASEVYVRNKGRQTVEAGMRSFDHTLAADVSEAEVLALVGRLNADPQVDGILVQLPLPA
                     QIDAQKVIEAIDPGKDVDGFHPVNAGRLMTGVDGLVPCTPLGCLMLVHSVRPEIAGLE
                     AVVVGRSNIVGKPVAQLLLAQSCTVTVAHSRTRDLPAVCRRADILVAAVGRPEMIRGE
                     WVKPGATVIDVGINRVPNPGAGEGKTRLVGDVAFNEAKEIAGAITPVPGGVGPMTIAC
                     LLRNTVVAACRRRGLPDPRL"
     gene            1590..2636
                     /locus_tag="VE686_07640"
     CDS             1590..2636
                     /locus_tag="VE686_07640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012455856.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016829 - lyase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MaoC family dehydratase"
                     /protein_id="HYY84356.1"
                     /translation="MKTNGGRFFEDFVLGETIRHATPRTVTSADAALYTALYGARFAV
                     QSSDAFARAAGYPQSPLDDWLVFHVVFGKTVPDISLNAVANLGYADGRLLKSVFPGET
                     LSAVSEVIGLKESSNRQTGVVYVRSTGFDSGGEAVLTYCRWVLVRKRDPAAVARAEHV
                     PDLPKAVGAADLGGAVPPIDGAAYDLALAGSPHRFGDYAPGEKIDHVGGMTVEEAEHQ
                     LATRLYQNTAKVHFDQHAAKDSRFGRRLIYGGHVISLARALSFNGLANAFHVAAINGG
                     RHVAPLFAGDTVYAWSEVLDTAEVPGRSDVGGLRLRTVATKNQPCGAYPHKTGEGYDA
                     AVILDLDYWALMPR"
     gene            complement(2688..>2827)
                     /locus_tag="VE686_07645"
     CDS             complement(2688..>2827)
                     /locus_tag="VE686_07645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018426989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HYY84357.1"
                     /translation="GVLSFFSTTTVFGTPIDVTLSELALEAFFPADDATAQALRGGTP
                     L"
BASE COUNT          424 a         1006 c          947 g          450 t
ORIGIN      
        1 accaccgaga gctgtggtgc cgcggcgaag tccccgcctg cttacccgaa actcgggagc
       61 atgacgcgcg tctcgcttaa gttcttgatc cggctggtgg agctgagggg aatcgaaccc
      121 ctgacctctg cagtgcgatt gcagcgctct cccatctgag ctacagcccc gcgccgggtc
      181 cgggctttta gggcgcgccg tcgagacctg tcaacgacaa aggggctggg ccgccacgcc
      241 tcgcgcccca cgggttgttc ggcctcacgt cgaacgctaa aggacgtgcg gccttccacg
      301 tctttcctgc cgagacagtt cgatgcgcgc gatccttgac gtcctgatgc tggcgctgaa
      361 cctctacacg tggatcatca tcgccgcggc ggtgatcagc tggctgatcg cattcaacgt
      421 cgtcaacacg cgcaacgact tcgtgcgctc cgtggaggcg ttcctgtacc gggtgacgga
      481 gccggtgctc gggcccatcc gccgcatcct gccgaacctc ggcgggatcg acgtttcgcc
      541 gatcatcctg ctcttgatca tcttcttcat ccagcgcgtg atcgtgctct acctctaccc
      601 gtacgtgccc tgatgccggc gtgggaggcg caggcggacg ggctcacccg gttcacccag
      661 gcgcaagccg cgtgagcgcg accctgatcg acggcaaggc gcaagcggcg gccctgcggg
      721 cccgcgtcgc cagcgaggtg cgccgcctcg ccgctcggga cgtcgtgccg gggctcgcgg
      781 tggtgctcgt cggcgcagac ccggcgagcg aggtctacgt ccgcaacaag gggcgccaga
      841 ccgtcgaggc cggcatgcgg tcgttcgacc acacgcttgc ggcggatgtg agcgaagcgg
      901 aggtcctcgc cctggtcggc cgcctcaatg ccgacccgca ggtcgacggt atcctggtcc
      961 agctgcctct gccggcgcag atcgacgccc agaaggtgat cgaggcgatc gatccgggca
     1021 aggacgtcga cggcttccat ccggtgaatg ccggccgcct catgaccgga gtcgacggcc
     1081 tcgtgccttg cacccccctc gggtgcctga tgcttgtcca ctcggtccgc cccgagatcg
     1141 ccggcctcga ggcggtggtg gtcgggcgat cgaacatcgt gggtaagccc gtggcccagc
     1201 tgctcctcgc ccagagctgt accgtgacgg tcgcccactc gcgaacgcgc gaccttccgg
     1261 cggtctgccg ccgggccgat atcctggtcg cggccgtcgg gcggcccgag atgatccgcg
     1321 gcgagtgggt gaagcccggc gcgacggtga tcgacgtcgg catcaaccgc gtcccgaacc
     1381 ctggcgccgg cgagggcaag acccgtctcg tcggcgacgt tgccttcaac gaggcgaagg
     1441 aaatcgcggg cgccatcacg cctgtgccgg gtggcgtcgg gcccatgacg atcgcctgcc
     1501 tgctgcgcaa caccgtcgtt gctgcctgcc gccgccgcgg gctgccggac cctcggctgt
     1561 gacccgcccc gaatgacccg gaggcgagca tgaaaaccaa cggcggccgc ttcttcgagg
     1621 acttcgtgct cggcgaaacc atccggcacg cgacgcctcg aaccgtgacc tcggccgatg
     1681 ccgcgctcta cacggcgctc tacggcgcgc gcttcgcggt ccagtcctcc gatgccttcg
     1741 cccgcgcggc cggatatccg cagagcccgc tcgacgactg gctcgtcttc cacgtcgtct
     1801 tcggcaagac ggtgccggac atctcgctga atgccgtggc caacctcggc tacgccgacg
     1861 gccgcttgct caaatccgtg ttcccgggcg agacgctttc ggccgtgtca gaagtgatcg
     1921 gcctcaagga gagctccaac cggcagacgg gcgtcgtcta cgtgcgctcc accggcttcg
     1981 acagcggcgg cgaggcggtc ctgacctatt gccgctgggt gctggtgcgc aaacgcgatc
     2041 ccgccgctgt cgcccgcgcc gagcacgtgc ccgacctgcc gaaggccgtc ggtgccgccg
     2101 acctcggcgg cgccgtgccg ccgatcgatg gcgcagccta cgacctcgca ctggccggga
     2161 gtccgcaccg cttcggcgac tacgccccgg gcgagaagat cgaccacgtc ggcggcatga
     2221 cggtcgagga ggcggagcac cagctcgcga cgcggctgta ccagaacacc gccaaggtcc
     2281 atttcgacca gcacgcggcg aaggactcgc gcttcggccg gcgcctgatc tacggcggcc
     2341 acgtcatttc gcttgctcgc gcgctgtcgt tcaacggcct cgccaatgcg ttccacgtcg
     2401 cggcgatcaa cggcggccgc cacgtggcgc cgctgttcgc cggcgatacc gtctatgcct
     2461 ggagcgaggt gctcgacacg gccgaggtcc caggccgcag cgacgtcggc ggcttacgcc
     2521 tacgcaccgt cgcgacgaag aaccagccct gcggcgccta tccccacaag accggcgagg
     2581 gctacgacgc ggcggtgatc ctcgatctgg attactgggc gctgatgccg cgctgaggtg
     2641 tccgagccgt gtgacggcac ggcagggcgg ctgcgccctt gcgacgatca gagcggagtg
     2701 ccaccgcgaa gcgcctgcgc ggtggcgtcg tcggccggga agaaggcctc gagcgcgagc
     2761 tccgacagcg tcacgtcaat cggcgtcccg aagaccgtgg tggtcgagaa gaatgacagc
     2821 acgccgc
//
LOCUS       DASQWN010000401         2891 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_231750, whole genome shotgun sequence.
ACCESSION   DASQWN010000401 DASQWN010000000
VERSION     DASQWN010000401.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2891)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2891)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2891
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_231750"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            257..1105
                     /locus_tag="VE686_07650"
     CDS             257..1105
                     /locus_tag="VE686_07650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019903672.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HYY84358.1"
                     /translation="MPRRSLAARSADAVRRNPTIFIGALLLAALVLVALLAPVIAADP
                     FRQAPINRMRPPSERWWFGTDQFGRDIFSRTIYGTRVSLTVGISVALFSSIIGLIIGL
                     ACGYVRALDAVLMRVMDGLMAIPSILLAIALITLTRPGLGIVIVAIVIPEVPRVARVV
                     RSVVLSIRSQPYVESAVAGGTRSLKLLVRHILPNTLAPLIVQATYVCASAMLIEAGLS
                     FLGAGVPPEIPSWGNIIAQGRTFFQIAPWSILIPGAFLALTVLAVNMLGDGLRDRLDP
                     RLARRM"
     gene            1102..2175
                     /locus_tag="VE686_07655"
     CDS             1102..2175
                     /locus_tag="VE686_07655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008136961.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HYY84359.1"
                     /translation="MTILQVRDLKTQFFTRDGVVRAVDGVSFDLNPGETLGIVGESGC
                     GKSVTALSILRLIPAQAGRIVGGSVTFEGTDLTGLSESEMRKVRGHSISMIFQEPMTS
                     LNPVLTVGTQIAENVVRHWGVGWREARDRAREVLELVRLSDPKRRLDEYPHQLSGGMR
                     QRVMIAMALSCDPKVLIADEPTTALDVTIQAQILDLMLELKEKIGAAIIMITHDLGVI
                     AETAQRVIVMYAGRKVEEASVEDLFARPAHPYTRGLMRAIPRLDLDAEEAGRRARLDE
                     IPGIVPVLTQAIPGCAFASRCAFATDRCRVEPPPLFEQGAGGFAAAQSHHGRAGIAHP
                     HDGPTGPHLAACWHTDRVLEAAA"
     gene            2172..>2891
                     /locus_tag="VE686_07660"
     CDS             2172..>2891
                     /locus_tag="VE686_07660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015689249.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HYY84360.1"
                     /translation="MSEGPSLEVRDLVKHFPLSGGLLSRKKKVVRAVDGVSFDVRRGE
                     TLGVVGESGCGKSTLGKVVMKLLEPTSGTILLGGTDVTHLEPGAMWPHRRQIQLVFQD
                     PYSSLNPRLSAGTIVGEPLENFGLARGSDKDGRVAELFKRVGLRPEAMRKYPHEFSGG
                     QRQRLGIAKALAVNPDVIVADEPVSALDVSVQAQVLNLLIDLQDEYRLTYLFISHDLG
                     VMRHVSHRIAVMYLGRIVELTD"
BASE COUNT          407 a         1067 c          933 g          484 t
ORIGIN      
        1 aggctacctt ttcagccggc ccctgcctgc ctcggaggtg ccgaggctcc tcgcgcagat
       61 ccagctgcag atgcggtcgg ccgcgtaagc ccgcacgccc ccggccgccg ttcgaaaatg
      121 tgtctggcga gctagcttgc ccaggcgttt tgcgcttacg ctcccgggta gtctccggcg
      181 acgaggaacg ccgccgttct tcgggtaagc tcaaacgtcc gtgaccgcca cgattgccct
      241 tgccgacgac gtcgtcatcc cgcgcaggtc gcttgccgcc cggtccgctg acgccgtccg
      301 gcgcaaccct acgatcttca tcggcgcgct ccttctcgcc gcgctcgtcc tcgtggcgct
      361 gctggcgccg gtcattgccg ccgatccgtt ccgccaggcg ccgatcaatc gcatgcggcc
      421 cccctcggag cgttggtggt ttggaaccga tcagttcggg cgcgacatct tctcgcgcac
      481 gatctatggc acccgcgtct cgctgacggt cggcatctcg gtcgcgctgt tctcgagcat
      541 catcggcctg atcatcgggc ttgcctgcgg ctacgtccgc gccctcgacg ccgtgctgat
      601 gcgcgtgatg gacgggctca tggcgatccc gtccatcctt ctcgcgattg cgttgattac
      661 attgacgcgg ccggggttgg gcatcgtcat cgtggcgatc gtcatcccgg aggtgccgcg
      721 cgtggcgcgg gtggtgcgca gcgtcgtcct gtcgatccgc agccagccct acgtcgagag
      781 cgccgttgcg ggcggcacgc gcagcctcaa gctcctcgtg cggcacatcc tgccgaacac
      841 gctggcgcct ctcatcgtcc aggcgaccta cgtctgcgcc tcagccatgc tgatcgaggc
      901 cggcctgagc ttcctcgggg cgggggtgcc gccggagatc ccgagctggg gcaacatcat
      961 cgcgcagggg aggaccttct tccagatcgc gccgtggagc atcctgatcc ccggcgcctt
     1021 cctggcgctc acggtgcttg ccgtgaacat gctcggcgac ggcctgcgcg accggctcga
     1081 cccgcgcctg gcgaggcgca tgtgacgatc ctccaggtcc gcgatctcaa gacccagttc
     1141 ttcacccgcg acggagtggt gcgtgccgtc gacggcgtgt cgttcgatct caaccccgga
     1201 gaaacgctcg ggatcgtggg cgaatccggc tgcggcaagt cggtgacggc gctctcgatc
     1261 ctgcgcctca ttccggcgca ggcgggccgg atcgtcggcg gctccgtcac cttcgagggc
     1321 accgacctca cgggcctctc cgagagcgag atgcgcaagg tccgcggcca cagcatctcg
     1381 atgattttcc aggagcccat gacgagcctc aatccggtgc tcaccgtcgg cacgcagatc
     1441 gccgagaacg tggtgcggca ctggggcgtc ggctggcgcg aggcgcgcga ccgcgcccgc
     1501 gaggtcctcg agctcgtccg cctctccgac cccaagcgtc ggctcgacga atacccgcac
     1561 cagctctcgg gcgggatgcg ccagcgcgtg atgatcgcca tggcgctgtc gtgcgacccg
     1621 aaggtcctca tcgccgacga gccgacgacc gctcttgacg tcaccatcca ggcccagatc
     1681 ctggatctca tgctcgagct gaaggagaag atcggcgccg cgatcatcat gatcacgcac
     1741 gacctcggcg tcatcgccga gacggcgcag cgggtcatcg tcatgtacgc cggccgcaag
     1801 gtcgaggagg cgagcgtcga ggaccttttc gcgcgccccg cgcaccccta cacgcggggc
     1861 ctcatgcggg cgatcccgcg cctcgacctc gatgccgagg aggccggccg ccgcgcccgc
     1921 ctcgacgaga tccccggcat cgtcccggtg ctgacgcaag ccatcccggg ctgcgccttc
     1981 gcgagccgct gcgccttcgc aacggaccgc tgccgcgttg agccgccgcc cctgttcgag
     2041 cagggcgcag ggggtttcgc agcggcgcag tctcatcatg gccgcgcggg cattgcccac
     2101 cctcatgacg gcccgaccgg cccccacctc gccgcgtgct ggcacaccga ccgggtgctc
     2161 gaggcggccg catgagcgag ggtccgagcc tcgaggtccg cgacctcgtc aagcacttcc
     2221 ccctgagcgg cggcctgctc tcgcgcaaga agaaggtggt gcgcgcggtc gacggcgtca
     2281 gcttcgacgt gcgccgcggc gagacgctcg gcgtcgtcgg cgagtccggc tgcggcaagt
     2341 cgaccctcgg caaggtcgtc atgaagctgc tcgagccgac ctcgggcacg atcctcctcg
     2401 gcggcacgga cgtcacgcat ctcgagcccg gcgccatgtg gccgcaccgg cggcagatcc
     2461 agctcgtgtt ccaggacccg tactcgtccc tcaacccgcg cctgtcggcc ggcaccatcg
     2521 tcggcgagcc actcgagaac ttcggcctcg cccgcggctc cgacaaggac ggccgggtcg
     2581 ccgagctgtt caagcgcgtc ggccttcggc ccgaggcgat gcggaaatac ccgcacgagt
     2641 tctcgggtgg ccagcgccag cgcctcggca tcgccaaggc gctcgccgtg aacccggacg
     2701 tcatcgttgc ggacgagccc gtctcggccc tcgacgtctc cgtccaggcg caggtgctga
     2761 acctcctcat cgatctgcag gacgagtacc ggctgaccta cctctttatc agccacgatc
     2821 tcggcgtcat gcggcacgtg agccaccgca tcgccgtcat gtacctcggc cgcatcgtcg
     2881 agctcaccga c
//
LOCUS       DASQWN010000402         2365 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_70611, whole genome shotgun sequence.
ACCESSION   DASQWN010000402 DASQWN010000000
VERSION     DASQWN010000402.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2365)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2365)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2365
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_70611"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..933)
                     /locus_tag="VE686_07665"
     CDS             complement(<1..933)
                     /locus_tag="VE686_07665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009764048.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004497 - monooxygenase activity [Evidence
                     IEA];
                     GO_function: GO:0005506 - iron ion binding [Evidence IEA];
                     GO_function: GO:0016705 - oxidoreductase activity, acting
                     on paired donors, with incorporation or reduction of
                     molecular oxygen [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome P450"
                     /protein_id="HYY84361.1"
                     /translation="MQAEPLFRPPAPPPLDRSLDLIDFLKLLRANPLETWANEHFEQL
                     IVSGEGALGRITVVSDPAAIRHVLVDNAANYRKDDLQLRVLAPGLGRGLLTADGDEWR
                     LQRRTLAPLFSPRTVASFVPDMNAAAERLVRRWRRNRPGRVVDLSLEMTRVTLDVLER
                     TIFTKGPARDPDALGRAITRYFEAIGPVDPLDLFGMPDWLPRIGRLKARPAMRFFEEV
                     VGELIESRRALMESGEPAPRDLLTLLLEAADPETGRGLSDVEVRANIVTFIGAGHETT
                     ANALSWSLYLLSQDERARARVEQEVDEVPIEPGHL"
     gene            1012..>2365
                     /gene="fumC"
                     /locus_tag="VE686_07670"
     CDS             1012..>2365
                     /gene="fumC"
                     /locus_tag="VE686_07670"
                     /EC_number="4.2.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020091298.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004333 - fumarate hydratase activity
                     [Evidence IEA];
                     GO_process: GO:0006099 - tricarboxylic acid cycle
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class II fumarate hydratase"
                     /protein_id="HYY84362.1"
                     /translation="MSPSATRTESDTFGPIEVPAERYWGAQTQRSLQNFRIGGERLPV
                     PLIRALGLVKQAAALVNKDLGELDGRVADAVAAAAAEVVEGKYDDEFPLVVWQTGSGT
                     QSNMNANEVIAALANERLGGQRGGKSPVHPNDHVNRGQSSNDSFPSAMHIAAARDIND
                     RLLPALRHLLRALNDKAEAFADLVKIGRTHLQDATPVTLGQEFSGYAAQVAFGIARIE
                     ATLPGLYALAQGGTAVGTGLNAHPEFAERFAAKVAQLTALPFTSAPNKFEALAAHDAL
                     VFTQGALASLAAGLFKIANDVRLMGSGPRSGLGEISLPENEPGSSIMPGKVNPTQAEA
                     MTMVCAQVIGNNTTVAFAGSQGHFELNVFKPVMANAVLQSVRLLADAAVSFADNCVIG
                     IEPNRDRLTDLLNRSLMLVTALAPKIGYDKAAEIAKKAHREGTSLKAAALALGFLTDA
                     E"
BASE COUNT          399 a          815 c          827 g          324 t
ORIGIN      
        1 caggtgtccg ggctcgatgg gcacctcgtc cacctcctgc tcgacacggg cgcgagcccg
       61 ctcgtcctga gagaggagat aaagcgacca ggacagggca ttggccgtgg tctcgtggcc
      121 ggcgccgatg aaggtgacga tgttcgcccg cacctcgacg tccgacaggc ccctgcccgt
      181 ctcgggatcg gcggcctcga ggagaagggt caggagatcg cgcggagcag gctcgcctga
      241 ctccatgagg gcgcgacggg actcgatgag ctcgccgacg acctcctcga agaagcgcat
      301 ggcgggccgg gccttgagcc gtccgatgcg cggcagccag tcgggcatgc cgaacagatc
      361 gagcggatcg acggggccga tggcctcgaa gtagcgcgtg atggcgcgcc cgagcgcgtc
      421 gggatcgcgc gccggaccct tggtgaagat ggtgcgctcg agcacgtcga gggtgacacg
      481 ggtcatctcg agggagaggt cgacgacgcg gccagggcgg ttgcggcgcc agcggcgaac
      541 gaggcgctcc gcggcagcgt tcatgtcagg cacgaagctc gcgacggtgc gtggcgagaa
      601 cagcggcgcg agcgtgcgcc gctgcaggcg ccactcgtcg ccgtcggcgg tgaggaggcc
      661 gcggccgagc ccgggcgcga gcacacgcag ctgcaggtcg tccttgcggt agttcgcggc
      721 gttgtcgacg agcacgtgcc ggatagcggc cgggtcgctg accaccgtga tgcgcccgag
      781 ggccccttcg cccgagacga tcagctgctc gaaatgctca tttgcccaag tctcgagggg
      841 gtttgcccgc aaaagcttca ggaagtcgat aaggtcgagg gagcggtcga gcgggggcgg
      901 cgccggcggg cgaaacagcg gttcggcttg catcgtgagg agcaccgggg tcgaagcgcg
      961 gaagccgcgc gtttaaggta ggcaggacgc caccgatccg aagaggccat gatgtcgccc
     1021 tccgccacgc gcaccgaatc cgacaccttc gggccgatcg aagtcccggc cgagcgctat
     1081 tggggcgcgc agacccagcg ctcgctgcag aacttccgca tcggcggcga gcgcctgccc
     1141 gtgccgctca tccgggcgct cggcctcgtg aagcaggcgg ccgccctcgt gaacaaggat
     1201 ctcggcgagc tcgacggacg ggtcgccgac gccgtagcgg cggccgccgc cgaggtcgtg
     1261 gagggcaagt acgacgacga gttcccgctc gtggtgtggc agaccggatc gggcacgcag
     1321 tcgaacatga acgccaacga ggtcatcgcc gcgctcgcga acgagcggct cgggggtcaa
     1381 cggggcggca agtcgccggt ccatccgaac gaccacgtca accggggcca atcctcgaac
     1441 gacagcttcc cgtcagccat gcacatcgcc gccgcgcggg acatcaatga ccggctgctg
     1501 ccggcgctgc gccacctgct gcgcgccctc aacgacaagg ccgaagcctt cgccgacctt
     1561 gtgaaaatcg ggcgcacgca ccttcaggac gcaaccccgg tcaccctcgg gcaggagttc
     1621 tcgggctacg ccgcgcaggt ggccttcggc atcgcgcgga tcgaggcgac gctccccggc
     1681 ctctatgcgc tcgcgcaggg tggcacagca gtcgggaccg gcctcaatgc ccaccccgag
     1741 ttcgcagagc gcttcgccgc caaggtggcg cagctgacgg ccctgccctt tacctcggcg
     1801 ccgaacaagt tcgaggcgct cgcggcgcac gacgccctgg tgttcacgca aggggcgctc
     1861 gccagcctcg ccgccggcct cttcaagatc gccaacgacg tccggctcat gggctccggt
     1921 ccgcgctcag gcctcggcga gatatccctg cccgagaacg agcccgggtc atcgatcatg
     1981 cccggcaagg tcaacccgac ccaggccgag gccatgacca tggtgtgcgc gcaagtgatc
     2041 ggcaacaaca cgacggtggc gtttgccggc agccagggtc atttcgagct caacgtgttc
     2101 aagcccgtga tggcgaacgc cgtgctgcag tccgtgcgcc tcctcgccga cgccgccgtg
     2161 agcttcgccg acaactgcgt catcggcatc gagcccaacc gcgaccgcct caccgacctg
     2221 ctcaaccgct cgctcatgct cgtgaccgcg ctcgcgccga agatcggcta cgacaaggcg
     2281 gccgagatcg cgaagaaggc gcaccgcgag gggacgtccc tcaaggcggc cgcgctcgcg
     2341 ctcggcttcc tcaccgatgc cgagt
//
LOCUS       DASQWN010000403         4933 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1160114, whole genome shotgun sequence.
ACCESSION   DASQWN010000403 DASQWN010000000
VERSION     DASQWN010000403.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 4933)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4933)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4933
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1160114"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1160)
                     /locus_tag="VE686_07675"
     CDS             complement(<1..1160)
                     /locus_tag="VE686_07675"
                     /EC_number="1.8.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012319266.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite reductase subunit alpha"
                     /protein_id="HYY84363.1"
                     /translation="MTMHAAPPIFVVPETAPFSQEQRAWLSGYLAALLAPDGQPVTPL
                     PGFDPAAAAGEPGPRLADSDDAPWHDPSLPLDERLGLASERPLAPRLMAAMAQQDCGQ
                     CGYNCADYANALFLKREERLNLCAPGGKDTFRALKKLAEELEHAKTESRPAAALIESR
                     APAATSAPGSSREAPAGAALLSRRRLNAPHAEKETWHVEIDLTGTGVDYAVGDSLGVF
                     PVNAPGLVDAVVAQLGARPERIIGERTLRDTLMHDRCLGPAPDALFQLIAYVTGGEQR
                     RKAQALAAGDDPDGDAAHLDVLGALHKFPSARPDAEAFIEVLEPLQPRLYSISSSPKA
                     DGGKVSLTVDAVRYAINKRRRLGVASTFLCERIETGAPLKIYVQKAHNFALP"
     gene            complement(1157..2929)
                     /locus_tag="VE686_07680"
     CDS             complement(1157..2929)
                     /locus_tag="VE686_07680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012456702.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NirA family protein"
                     /protein_id="HYY84364.1"
                     /translation="MTDSDFTAEQKRWLEGFASGSAAVRALGTVRAQPAAESTGPDAE
                     HLKAQDRTTAAGSKLADPERWKRAENPLDAYARLTTQAGEGTYPKPEDNFRWRFHGLF
                     YVAPAQNSFMCRLRLPNGILNHWQLAGLADLADRVAGPYAHVTTRANLQIREIVAENA
                     QAALEGIQMLGLCSKGSGADNIRNVTGSPTAGIDPQEIIDSRPLARAWHFHILNERSL
                     YGLPRKFNVGFDGGGIIPVLEETNDIGFQAVRAREGSPVEPGVWMKVVIGGITGHKDL
                     ARDAGLLCRPNECVAVADAIVRVFIEHGDRTDRNKARMKYLIDRWGFDTFVAAVEEKL
                     GRPFVRVGPDDVEPRPATDRFAHLGVHPQKQDGLNWVGIVLPVGKLTTDQMRALAKIS
                     GDCGDGDVRLTVWQNLILSGVPDAKVAEAEARIAALGLSTRASSIRAGLVACTGNTGC
                     KFAASDTKGHALMIADHVEARVALDVPVNVHLTGCHHSCAQHYIGDIGLIGAKVSVGD
                     DGDTVEGYDVVVGGGFAENARIGRELWKGVKAQDCPVQVEVLLRVYLAHRHGPHESFQ
                     AFTARHSIAELRALCQTPALEPAA"
     gene            complement(3212..>4933)
                     /locus_tag="VE686_07685"
     CDS             complement(3212..>4933)
                     /locus_tag="VE686_07685"
                     /EC_number="2.7.11.-"
                     /EC_number="3.1.3.-"
                     /EC_number="3.1.3.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007561436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004674 - protein serine/threonine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0004722 - protein serine/threonine
                     phosphatase activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006468 - protein phosphorylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional protein-serine/threonine
                     kinase/phosphatase"
                     /protein_id="HYY84365.1"
                     /translation="LARGLAISIGQCSEKGRKDTNQDFHGALIPDGSALALKGIAVAI
                     ADGIGSSPVSQVAAESAVKTLMTDYFSTPDAWSVKTAAQRVVAAANSWLHAETRRSQS
                     AYDLDRGYICTLSALILKGRRAHVFHIGDGRICRLVEGTLEQLTEDHRTVLSSQETYL
                     GRALGMAPHVEIDHLALDLAVSDVFVLTTDGVHEHVPPEVIARAVRVSDDLDHTARLI
                     VDEALARGSIDDRTVQIVRIDRLPVWDAGAFLGQVETLPAPPLLDERSVLDGYTILRP
                     LKESSRSHIYLASDPASGRTVSLKIPSIDLRDDPAYRQRFILEEWIARRLNNPHVVRA
                     HPQDRRRTHLYTVTEYVEGQTLAQWMIDHPKPDIETVRRIVEQIAAGLRAFHRLEMVH
                     QDLRPENVMIDLNGTVKIIDFGSTRVAGVEEAQPCHAEGVLGTHQYAAPEYFVGETGT
                     SCSDLFSLGVIAYQMLTGNLPYGAAIARTRTRAHQRKLRYVPAASPDDPVPEWVDGAL
                     RKAVHPDPSQRYQELSEFLQDLRHPNPALTGQRVPLYDRNPLLFWKALSGLLALALVW
                     LMAVRLA"
BASE COUNT          797 a         1579 c         1740 g          817 t
ORIGIN      
        1 tcagggaggg cgaaattgtg cgccttctga acatagatct tgagcggagc gccggtttcg
       61 atgcgctcgc agaggaacgt cgaggcgacg ccaagccgcc ggcgcttgtt gatggcgtag
      121 cgcaccgcgt cgacagtcag cgagaccttg ccgccgtccg ctttgggcga ggacgaaatg
      181 gagtagagcc gcggctgcag cggctcgagc acctcaatga aagcctcggc gtcaggccgg
      241 gcgctcggga atttgtgcag cgccccgagc acgtcgagat gggccgcatc gccgtcagga
      301 tcgtccccag ctgcgagtgc ttgtgccttg cggcgctgct cgcccccggt gacgtaagcg
      361 attagctgga acagcgcgtc tggcgcaggt ccgaggcagc gatcgtgcat gagagtgtcg
      421 cgcagggtgc gctcgccgat gatccgctcc ggacgggccc cgagctgggc gacgactgcg
      481 tccaccaacc ctggggcgtt cacgggaaac acgccgaggc tgtcgccgac ggcgtagtca
      541 acgccggttc cggtcaggtc gatctcgacg tgccaggtct ccttctccgc gtgcggcgca
      601 ttgaggcgac ggcgcgacag caaggccgct ccagccgggg cctcgcgcga ggagccgggg
      661 gcagaggtgg cggctggcgc acgtgattcg atcagcgcgg cggccggcct gctctcggtc
      721 ttggcgtgct cgagctcctc ggcgagcttc ttcagggccc ggaaagtgtc cttccctccc
      781 ggcgcgcaga ggttcaggcg ctcctctctc ttgaggaaca gggcgttggc gtagtcggcg
      841 cagttgtagc cgcattggcc gcagtcctgc tgcgccatgg cggccatcaa gcgcggcgcc
      901 aggggccgct cggacgccag acccaatcgc tcgtcgaggg gcagcgacgg atcgtgccac
      961 ggcgcatcgt cggaatcggc gagcctcggt ccgggttcgc ccgccgcggc cgcagggtcg
     1021 aagcccggca gcggcgtgac gggctgtccg tccggcgcca gcagcgcggc gaggtagccc
     1081 gacagccagg cgcgctgctc ttgcgagaac ggcgccgtct cgggaacgac gaagatcgga
     1141 ggcgctgcat gcatcgtcat gcggcgggct ccagagcggg cgtctggcac aacgccctga
     1201 gctccgcgat cgaatggcgg gcggtgaacg cctggaagct ctcgtgcggc ccgtgccgat
     1261 gcgcgaggta cacgcgcaag agcacctcga cctgaacggg gcaatcctgc gccttgacgc
     1321 ctttccacag ctcgcggccg atcctggcat tctcggcaaa gccgccgccg acgacgacgt
     1381 cgtagccctc gacagtgtcg ccgtcgtcgc cgacgctcac cttcgcgccg ataaggccga
     1441 tgtcgccgat gtagtgctgg gcacaagagt ggtggcagcc ggtcaggtgc acgttgacgg
     1501 gcacgtcgag ggcgacgcgc gcctcgacgt gatcggcgat catgagcgcg tggcccttgg
     1561 tgtcgctggc ggcgaacttg cagccggtgt tgcccgtgca ggcgacaagg ccggcccgga
     1621 tgctcgaggc acgggtcgac agcccgagcg cggcgatgcg ggcctcggct tcggcgacct
     1681 ttgcgtccgg caccccggag aggattaggt tctgccagac cgtcaggcgc acatccccat
     1741 cgccgcaatc gcccgagatc ttggccaggg cgcgcatctg gtccgtggtg agcttgccga
     1801 caggcagcac gatgccgacc cagttcaggc cgtcctgctt ctgcgggtgg acgccgaggt
     1861 gggcgaagcg gtcggtggcg gggcgaggct cgacgtcgtc ggggccgacg cggacgaacg
     1921 gccgcccgag cttctcctcg acggcggcga cgaacgtatc gaagccccag cggtcgatga
     1981 ggtacttcat gcgcgccttg ttgcggtccg tgcggtcgcc gtgctcgatg aacacgcgca
     2041 cgatcgcgtc cgcgacggca acgcactcgt tgggccggca cagcagcccc gcatcgcggg
     2101 cgagatcctt gtggccggtg atgccgccga tgactacctt catccacacg ccgggctcga
     2161 ccgggctgcc ctcacgcgcc cgcacggctt ggaagccgat gtcgttcgtc tcctcgagca
     2221 cggggatgat gccgccgccg tcgaagccga cgttgaactt gcgcggcaag ccgtagagcg
     2281 accgctcgtt caagatgtgg aagtgccatg cgcgcgcgag cgggcgcgaa tcgatgatct
     2341 cctgcggatc gatgcccgcc gtgggcgacc ccgtcacgtt gcggatgttg tccgcgcccg
     2401 agcccttcga gcacagcccg agcatctgga tgccctcgag ggcggcttgc gcgttctcgg
     2461 ccacgatctc gcggatctgc aggttcgcgc gtgtagtgac gtgcgcgtag ggcccggcga
     2521 cgcggtcggc gagatccgca aggccggcga gctgccaatg gttgaggatg ccgttcggca
     2581 ggcggagccg gcacatgaac gagttctgcg ccggagccac gtagaagagc ccgtggaagc
     2641 gccagcggaa attgtcttcg ggcttagggt acgtgccctc gcccgcttga gtcgtgagac
     2701 gcgcgtaggc gtcgagcggg ttctcggccc tcttccagcg ctccgggtcg gcaagcttac
     2761 ttccggccgc cgtggtccta tcctgcgcct tgagatgctc ggcgtcaggc ccggtcgatt
     2821 ccgccgcagg ttgggcgcgc actgtcccaa gcgcccggac cgcagcgctc ccggaggcga
     2881 atccttctag ccagcgcttc tgctcagcgg tgaagtcgga gtcagtcatc ggccgcctcg
     2941 gaaaatgcgc cgaacgtttg tgaggaggcc accagggcct ggagaaccgg cgaacgtgtc
     3001 gcctctggct ccagcgagtt ggaagcaggt ccgtgccaag agatgctggt cccgtcgacg
     3061 agtgcttgca tcccagcacg caacggacgt gccacaacga atggccctat gttcgatgct
     3121 cagcagaccg gcgcccgtgc ggcttacgtc gcgctgctca tctattgtgc gatgcacact
     3181 cggaatggcg acatgaaagg catggtccgg atcatgccag ccgcaccgcc atcagccaga
     3241 cgagcgctag agccaggaga cccgacagcg ccttccaaaa caggagaggg ttgcggtcgt
     3301 agagagggac ccgctggccc gtcagggccg ggttgggatg acgcaggtcc tggaggaact
     3361 ctgagagttc ctggtagcgc tgcgacgggt cggggtggac cgccttgcgc agggcgccgt
     3421 cgacccactc cggcaccggg tcgtcagggc tcgcggcagg gacatagcgc agcttgcgct
     3481 gatgcgcccg cgttcgcgtg cgcgcgatcg cggccccgta gggcaggttc ccggtcaaca
     3541 tctggtaggc aattacaccg agcgagaaga ggtctgagca agatgtgccg gtctccccaa
     3601 cgaagtactc gggtgcagcg tattggtgcg tgccgaggac gccctccgca tgacagggct
     3661 gggcctcctc aaccccggcc acccgagtgg agccgaaatc gataatcttc acggtgccat
     3721 tgaggtcgat catgacgttc tcgggccgca ggtcctggtg caccatttcc aagcggtgga
     3781 acgcgcgcag gcccgcggcg atctgctcaa cgatgcggcg cactgtttct atgtcaggct
     3841 ttggatgatc gatcatccac tgcgcgagag tctgaccctc gacgtactca gtgaccgtgt
     3901 agaggtgcgt gcgccggcgg tcctgggggt gagcccggac tacgtgcggg ttgttcaggc
     3961 ggcgcgcgat ccactcctcc aagataaagc gctgccggta cgcagggtcg tcgcgcaggt
     4021 cgatcgatgg gatcttcagg gacacagtcc gtccggacgc cgggtcggag gcgaggtaaa
     4081 tgtggctgcg gctgctctct ttgagcggac ggaggatcgt gtagccgtcg agaacactgc
     4141 gctcgtccag gagtggcggg gctggcaacg tctcgacctg gcccaggaag gcgccggcgt
     4201 cccagacagg caggcggtcg atccgcacga tctggaccgt gcggtcgtcg atgctgcccc
     4261 gcgccagcgc ctcgtccaca atcaggcgcg cggtgtggtc gagatcatcg gagacccgga
     4321 ccgcacgggc gatgacctcc ggcggaacgt gctcgtggac gccgtccgtg gtcagcacga
     4381 acacgtcgct cactgcgaga tcaagagcca gatggtcgat ctcgacatga ggggccatgc
     4441 caagcgcgcg gccgagatag gtctcttgcg aggacaggac cgtgcggtgg tcttcagtga
     4501 gctgctcgag cgtgccctcc acaaggcggc agatgcggcc gtcgccgatg tggaaaacgt
     4561 gggcgcgacg ccctttcaga atcagagcgc tcagggtgca gatgtagcca cggtcaaggt
     4621 cgtaggcgct ctggctgcgc ctggtctcag catggagcca ggagtttgcg gccgcaacga
     4681 cacgctgcgc cgccgtcttc acggaccagg catccggggt ggagaagtag tcggtcatca
     4741 aggttttcac cgccgactcg gccgcgacct gactcaccgg actcgatccg ataccgtcgg
     4801 cgattgcgac cgcgatgccc ttgagggcga gcgctgagcc atctgggatc agagcgccgt
     4861 ggaagtcctg gtttgtatcc ttgcggccct tctccgagca ttggccgatc gagatcgcga
     4921 gcccgcgcgc gag
//
LOCUS       DASQWN010000404         2114 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_529970, whole genome shotgun sequence.
ACCESSION   DASQWN010000404 DASQWN010000000
VERSION     DASQWN010000404.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2114)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2114)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2114
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_529970"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            214..1491
                     /locus_tag="VE686_07690"
     CDS             214..1491
                     /locus_tag="VE686_07690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008133202.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flavin-dependent oxidoreductase"
                     /protein_id="HYY84366.1"
                     /translation="MRVMIAGGGIGGLVAALSLHDAGIDATVFEAVGEIRPLGVGINL
                     LPHAVRELSELGLAERLDAVAIRTRELVYVNKFGQTIWREDRGLDAGYRWPQFSIHRG
                     TLQMLLLEAVRARLGADAVRTDRRLVAFEDDGRRVRATFEDRTGTRHQDEADVLIGAD
                     GIHSAVRRAFYAEEGPPIWNGAVLWRATTEAEPFLGGCSMVMAGHQAQKFVCYPISRE
                     VAQRGRSLVNWIAELRFDPSRGWRREDWNRPGRVEDFLPRFEAWNFGWLDAPSLIRGA
                     GAVYEYPMVDRDPVERWSFGRVTLLGDAAHPMYPIGSNGPSQAILDARVLAHRLATSG
                     DPVEALAAYDAERRPGTARIVLANRANGPERVMQAVEERAPEGFARLEDVISREELET
                     AAGDYKMIAGFDKDLLNERPSLSVARAAPLSAS"
BASE COUNT          324 a          764 c          747 g          279 t
ORIGIN      
        1 tcgcggtggc gctcgacctc aacggccgtg aggggtggga cgccgccccg gcaaggggtg
       61 caggacttgg cggctagcgg cgcggtcgcg gacggcatcg gccttgctcc atggctggag
      121 gacaaggcta ccacggcgcg acgcggcttg aacggcgcgg taaaactcgg aatggtcgcc
      181 cgctgcgccg cgggccggca ggggggagcc gcgatgcggg tgatgatcgc cgggggagga
      241 atcgggggcc tcgtcgccgc gctcagcctg cacgacgccg gcatcgatgc gacggtcttc
      301 gaggccgtcg gcgagatcag gccgctcggc gtcggcatca acctcctgcc gcacgcggtg
      361 cgagagctct ccgagctcgg gctggcggag cgcctcgacg cggtcgcgat ccgcacccgc
      421 gagctcgtct acgtgaacaa gttcggccag acgatctggc gcgaggaccg cggcctcgac
      481 gcgggctacc gctggccgca gttctcgatc caccgcggca cgctgcagat gctgctgctc
      541 gaggcagtgc gcgcacgcct cggcgccgat gccgtcagga ccgatcgccg cctggtcgcc
      601 ttcgaggacg atggccggcg cgtgcgcgcc accttcgagg accgcaccgg aacgcggcac
      661 caggacgaag ccgacgtgct catcggcgcc gacggcatcc actctgcagt gcgccgggca
      721 ttctacgcgg aggaggggcc gccgatctgg aacggcgccg tgctgtggcg ggccaccacg
      781 gaagccgagc cgttcctcgg cggctgctcc atggtcatgg ccgggcacca ggcccagaag
      841 ttcgtctgct accctatcag ccgagaggtg gcgcagcgcg gccgctccct cgtgaactgg
      901 attgcggaac tgcgcttcga tccgagccga ggctggcggc gcgaggactg gaaccggccg
      961 ggccgcgtcg aggacttcct gccgcggttc gaggcctgga acttcggctg gctcgacgcc
     1021 ccgagcctga tccggggtgc cggcgccgtc tacgagtacc ccatggtcga ccgcgacccg
     1081 gtcgagcgct ggagcttcgg gcgggtcacg ctcctgggcg acgccgcgca tcccatgtat
     1141 ccgatcggat cgaacggccc ctcgcaggcg atcctcgacg cccgcgtgct ggcgcaccgg
     1201 ctcgccacct cgggcgaccc cgtcgaggcg ctcgctgcct acgacgccga gcggcggccc
     1261 ggcacggcgc ggatcgtgct cgccaaccgg gcgaacggcc cggagcgcgt catgcaggcc
     1321 gtcgaggagc gtgcgccgga gggattcgcg cggctggagg acgtgatctc gcgcgaggaa
     1381 ctcgagacgg cggcgggcga ctacaagatg atcgccggct tcgacaagga cctcctgaac
     1441 gagcgcccct cgctgtcggt cgccagggcc gccccactgt ccgcaagcta gaacacctgg
     1501 atccccgcag ccctgaggct cgggggtttg ctttcaggct ctgcgcttcc tcttgaaaaa
     1561 gaggggggcg cgaggcgcgg tcggccccgg ccgcgaggcc gggcggaaac aggcaggcag
     1621 gccgtccccg cgtgaggtcg gccgcgcctc gcaccgcagt gcctttgatc cctggtcccg
     1681 cgcttcggtg ctccaggagg gctgcctccc gagcacctca agcgcttgcg cgcggacctc
     1741 tctcgtagtc gacctcggat cgaaaccgca ccgaggggac gaacccgcaa ggcgcagaac
     1801 cggcccgagg tccgccccag agaggacgga cgggaccccg cctcccgggg acgcgcccgg
     1861 cagccgcgcc gatcccggtc gacggtaagg accctggatg cgcgggacgt gacccccgcg
     1921 acccggacac cgcatcagcc cttcggacct ccaccttccg gcttcgctcc tcggaccacc
     1981 acctcctccg gtcccaccgt caccggcaag accctcgtca gcgatgccgc cctgcaacca
     2041 gacacctccg gaagcaccct ctgccgggcg ggacgagaga cgtaaaagca caaaccaaga
     2101 acattgtcaa ggac
//
LOCUS       DASQWN010000405         3956 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_927743, whole genome shotgun sequence.
ACCESSION   DASQWN010000405 DASQWN010000000
VERSION     DASQWN010000405.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 3956)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3956)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3956
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_927743"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..765)
                     /locus_tag="VE686_07695"
     CDS             complement(<1..765)
                     /locus_tag="VE686_07695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009494586.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="extensin family protein"
                     /protein_id="HYY84367.1"
                     /translation="MRRRVLVALSALTLVGLGLTGCGMFRYDQREAWRTQAEESCIAQ
                     KLVTPTAYMSRSSPIDGPGACGISHPFKIAAFGGGEISLRQPVTLGCPIIPRIDGWFE
                     EVVQPAAELYFGTRVAEVRSGSYACRGRNNQRGAKLSEHSYGNAMDVMGFRLVDGREV
                     SVERGWRGGQDEQEFLREVFVGACRYFTTVLGPGSDAFHYNHFHIDLARHDPRGERRV
                     CKPLIKFEPRLDASGQASQTRLPPPVARPQAAPESDD"
     gene            906..2153
                     /locus_tag="VE686_07700"
     CDS             906..2153
                     /locus_tag="VE686_07700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017487171.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016810 - hydrolase activity, acting on
                     carbon-nitrogen (but not peptide) bonds [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidase"
                     /protein_id="HYY84368.1"
                     /translation="MLSVIDIARRIDQGALSPHDAIRQSFDAIASRDGDVNAFVHVDR
                     GVAVRESGPLRGIAVGIKDIIDTADMPTEMGAAIYAGWRPKADASVVAMLRRAGATSV
                     GKTATTSFAYLDPAATRNPHNLNHTPGGSSSGSAAAVAAGMVPLSVGTQTGGSVIRPA
                     SYCGVAAIKPSFRLIPTVGVKCFSWTLDTLGLFAASVSDVAFALAALTDRSDLRPGGD
                     AGTAPRIGVVMQDFAGEPEPDSAAALETAVREVEKAGASVRAARLPAILGEAFAAHAT
                     VQDYEAVRALAWEYDRHGDALPPLIARLLEAAQPLGAEAYDGARSTAHRARGALHDGF
                     GEFDAYLTFSSPGAAPETLASTGDSRFNRLWTLMGVPCVNIPGFTNASGLPVGVQVVT
                     RFGQDARALSVARFVEAALARAR"
     gene            complement(2163..2489)
                     /locus_tag="VE686_07705"
     CDS             complement(2163..2489)
                     /locus_tag="VE686_07705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011087569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NIPSNAP family protein"
                     /protein_id="HYY84369.1"
                     /translation="MIHELRIYHCAPGRLPALLKRFESVTLDLWKRHGIRQAGFWTVA
                     IGSSNHDLYYLLEWESLAEREQKWGAFMSDPEWVAARTASERDGPILASTENLILQPT
                     AFSSVR"
     gene            2582..2989
                     /locus_tag="VE686_07710"
     CDS             2582..2989
                     /locus_tag="VE686_07710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006021405.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupin domain-containing protein"
                     /protein_id="HYY84370.1"
                     /translation="MEITKAGSPPTRRANADWFTGTVWQDAIVEAPDPARIKAVRVTF
                     EPGSRTAWHTHPLGQTLHVISGIGRVQTLGGPVQEIRPGDTVWIPPDEKHWHGAAPDR
                     GMVHIALHEHLNGKHVTWMEQVSDDDYRREPTG"
     gene            complement(3005..3283)
                     /locus_tag="VE686_07715"
     CDS             complement(3005..3283)
                     /locus_tag="VE686_07715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015317523.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY84371.1"
                     /translation="MLPLAGQEVPVHMGTLAFLASLLLGSTALAETPPGAAQPEHGPD
                     CTCRVEGRSVAVGATACLGTADGPRLAECGMVLNNTSWQITGRPCPES"
     gene            complement(3323..3778)
                     /locus_tag="VE686_07720"
     CDS             complement(3323..3778)
                     /locus_tag="VE686_07720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010915215.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum cofactor biosynthesis protein MoaE"
                     /protein_id="HYY84372.1"
                     /translation="MSASVRIQAEDFDVAAEIAALSKGGRDVGAVVTFTGLCRDEGGR
                     LAALELEHYPGMAEAEAARVVEDARARWPLSGVTVIHRYGKILPGQNIVLVVTASAHR
                     DAAFQAASFLMDYLKTRAPFWKREHLKDGTTGAWVDAKAADDVAAERWA"
BASE COUNT          588 a         1440 c         1376 g          552 t
ORIGIN      
        1 gtcgtcgctc tccggcgcgg cctggggccg cgccaccggc ggcggcaggc gcgtctggct
       61 cgcctgccct gaagcgtcga ggcgcggctc gaacttgatc aggggcttgc agacgcgtcg
      121 ctcgccgcgc ggatcgtggc gcgcgaggtc gatatggaaa tggttataat ggaacgcgtc
      181 cgaccccggg cccagcaccg tcgtgaaata gcggcaggcg ccgacgaaga cttcgcgcag
      241 gaactcctgc tcgtcctgcc cgccgcgcca tccgcgctcg acgctgacct cgcggccgtc
      301 gacaaggcgg aagcccatga cgtccatcgc attgccatag gagtgctcgg acaacttggc
      361 gccgcgctgg ttgttgcgtc cgcggcacgc gtaggagccc gaccgcacct cggcgacccg
      421 ggtgccgaaa tagagctcgg ccgccggctg cacgacctcc tcgaaccagc cgtcgatgcg
      481 cgggatgatc gggcagccga gcgtcacggg ctggcgcagg gaaatctccc cgccgccgaa
      541 ggcggcgatc ttgaagggat ggctgatgcc gcaggcgccc gggccgtcga tgggcgacga
      601 gcgcgacatg taggcggtcg gggtgacgag cttctgcgcg atgcagcttt cctcggcctg
      661 cgtgcgccac gcctcgcgct ggtcgtagcg gaacatgccg cacccggtca ggccgaggcc
      721 gacgagcgtc agggccgaca acgcaactag aacacgacgc cgcatgcccg gcaaattgcg
      781 acgaagtcgt aaacgccccg tcaacctcac gggcctgcga ctgcaccgaa tcgaagcaac
      841 cggcggtgcc ttcgtctgac gccgaggccc gtgctacata acggcccgca ttctcgggat
      901 ccgccatgct ttccgtaatc gacatcgcgc gccgcatcga ccagggcgcc ctctccccgc
      961 acgatgcgat ccggcagtcc tttgatgcca tcgcgtcgcg cgacggcgac gtgaacgcgt
     1021 tcgtccacgt cgaccgcggc gtcgccgtgc gggagagcgg gccgctgcgc ggcatcgcgg
     1081 tcggcatcaa ggatatcatc gacacggccg acatgccgac cgagatgggc gcggcgatct
     1141 atgccggctg gcggcccaag gccgacgcat cggtggtcgc catgctgcgc cgggccggag
     1201 cgacgtcggt cggcaagacc gcgacgacga gcttcgccta tctcgacccg gcggcgacgc
     1261 gcaatccgca caacctgaac cacacgcccg gcggctcgtc gtcgggctcg gctgcggccg
     1321 tcgcggccgg catggtgccc ctctccgtcg ggacccagac gggaggatcg gtgatccggc
     1381 ccgcgtccta ttgcggcgtc gcggcgatca agccgtcgtt ccggctcatc ccgacggtcg
     1441 gagtaaagtg cttctcgtgg accctcgaca ccctcgggct gttcgccgcc agcgtgtccg
     1501 acgtcgcctt cgcgcttgcc gcgctgaccg accgctccga ccttcgcccg ggcggcgacg
     1561 caggcacggc gccgcgtatc ggcgtcgtca tgcaggactt cgccggggag ccggagcccg
     1621 acagcgccgc cgcgctcgag accgcagtgc gggaggtcga gaaggccggc gcgagcgtgc
     1681 gggccgcccg ccttccggcg attctcggcg aggccttcgc ggcgcacgcg accgtgcagg
     1741 actacgaggc cgtgcgcgcg ctcgcgtggg agtacgaccg gcacggcgac gcgctgccgc
     1801 ccctcatcgc gcgcctgctc gaggcggcgc agcctctcgg cgcggaagcc tacgacgggg
     1861 cccgctccac cgcccaccgc gcacgcggcg cgctgcacga tggcttcggc gagttcgacg
     1921 cctatctcac cttctcgtca ccgggcgccg cgcccgagac cctcgcgagc accggcgact
     1981 cgcgcttcaa ccggctctgg accctgatgg gggtgccctg cgtcaacatc ccgggcttca
     2041 cgaacgccag cgggctgcct gtcggcgtcc aggtcgtcac gcgcttcggg caagacgcgc
     2101 gggcgctctc ggtcgcccgc ttcgtcgagg cagcgctcgc cagggcgcgc tgaagccgct
     2161 gcctaccgca ccgacgagaa tgccgtcggc tgcaggatga ggttctcggt cgaggcgagg
     2221 atcgggccgt cgcgctcgct cgccgtccgg gcggcgaccc actcggggtc gctcatgaag
     2281 gcgccccact tctgctcgcg ctcggcgagc gactcccatt cgagcagata atagagatcg
     2341 tggttcgagc tgccgatggc gacggtccag aagccggcct gacggatgcc gtgccgcttc
     2401 caaaggtcga gggtgacgct ctcgaagcgc ttcaggagcg ccggcaggcg gcccggggca
     2461 caatggtaga tgcgcagctc gtggatcacg gcggttcctc tcggggacta ggtcggacgg
     2521 ccgaacgcta tatgatcgcg gttcaagcgg ccaagcgggc acgcatcgag gagcgaaagc
     2581 aatggagatc acgaaggccg ggagcccgcc gacgcggcgc gccaacgcag actggttcac
     2641 cggcaccgtg tggcaggacg ccatcgtcga ggcgcccgat ccggcccgca tcaaggcggt
     2701 ccgcgtcacc ttcgagccgg gatcgcgcac ggcctggcac acgcaccccc tcgggcagac
     2761 gctgcacgtc atctcgggca tcggtcgcgt gcagaccctg ggcggccccg tccaggagat
     2821 ccggccgggc gacacggtgt ggatcccgcc ggacgagaag cactggcacg gcgccgcccc
     2881 cgaccgcggc atggtccaca tcgccctgca cgagcatctc aacggcaagc acgtcacctg
     2941 gatggagcag gtctcggacg acgactaccg ccgggagccg acgggttaag acagctccat
     3001 cgcctcagga ctccgggcag gggcggcccg tgatctgcca ggacgtgttg ttgagcacca
     3061 tgccgcactc ggcgaggcgg ggcccgtcgg cggtccccag gcacgccgtg gcgccgacgg
     3121 cgacggatcg gccttcgacc cggcaggtgc agtccggccc gtgctcgggc tgcgcagcgc
     3181 ccggcggcgt ctcggcgaga gccgtgctgc cgagcagcag gctggcgagg aaggcgagcg
     3241 tgcccatgtg caccggcacc tcctgtcccg cgagcgggag catccacgct cctcccgccc
     3301 gggtaaggcg tcaagcggcg cttcaggccc acctctccgc cgcgacgtcg tccgcggcct
     3361 tggcgtcgac ccaggcgccg gtcgtcccgt ccttgaggtg ctcgcgcttc cagaacgggg
     3421 cgcgggtctt gaggtagtcc atgaggaacg aggccgcctg gaaggccgca tcccgatggg
     3481 ccgacgcggt gaccacgagc acgatgttct gcccgggcag gatcttcccg tagcggtgga
     3541 tcacggtgac gcccgacaag ggccaccgtg cgcgcgcgtc ctcgacgacc cgcgccgcct
     3601 cggcctcggc catgccgggg taatgctcga gctcgagcgc ggcgagcctg ccgccctcgt
     3661 cgcggcacag gcccgtgaag gtgacaaccg cgcccacgtc ccggccgccc ttcgacagcg
     3721 cggcgatctc ggcggcgacg tcgaagtcct ccgcctggat gcggacgctc gcgctcatgg
     3781 gcgcctcacg ggcgcatcac accgcggcct ggacgatgat ctccacgaga tcctcgccct
     3841 cgagagccgc gccgatgcag gcgcgcatgg gcgccgcgtc gcgcgccacc cactcgtccc
     3901 aggcccggtt catttcggcc ttccggctca tgtcggccag gaacaccgtc gccgtc
//
LOCUS       DASQWN010000406         2212 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_765620, whole genome shotgun sequence.
ACCESSION   DASQWN010000406 DASQWN010000000
VERSION     DASQWN010000406.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2212)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2212)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2212
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_765620"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1267
                     /locus_tag="VE686_07725"
     CDS             <1..1267
                     /locus_tag="VE686_07725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018273459.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="oxidoreductase"
                     /protein_id="HYY84373.1"
                     /translation="ADSEAVARDALAAAVAELDKPRASAAGAQAWNPRSLRGALKAMP
                     DANLALISVPGDFAAAEARKALRRGLNVMIFSDNVPVEQEVALKQEGRALGRLVMGPD
                     CGTAIIGGVPLAFANRVRRGDIGVVGASGTGMQEVTSLISEAGGGISEAIGVGGRDLS
                     APVGGISTLMAIEALDADPATRRIVLVSKPPHPEVARAILARVGESAKRFTICFLGGS
                     ATELPPNATFAPTLRDAAEDALGGMAIAAGFEQPAKPARPGRVVGLFSGGTLCAEAQL
                     ILLAAGRRVVSNAPVPGARRSNEEGATDRIVDLGADEFTRGRPHPMIDPTVRDEELRK
                     ALGDPGVAVVLVDCIIGFGANADPAGHLAALVAAAGDGAPPVLASVTGTEGDPQVRSQ
                     RIAILERAGVIVAPSNAHAAELALSLCRA"
     gene            1281..>2212
                     /gene="arcC"
                     /locus_tag="VE686_07730"
     CDS             1281..>2212
                     /gene="arcC"
                     /locus_tag="VE686_07730"
                     /EC_number="2.7.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006019424.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008804 - carbamate kinase activity
                     [Evidence IEA];
                     GO_process: GO:0016310 - phosphorylation [Evidence IEA];
                     GO_process: GO:0019546 - arginine deiminase pathway
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="carbamate kinase"
                     /protein_id="HYY84374.1"
                     /translation="MTDALPSRLLVAIGGNATHPENIRGTSDEQKELAARTAQALLPL
                     AQLDNELILTHGNGPVVGKILMRQALTSQRIPPMSLDICVAHSQGGIAYLLVQALENA
                     LREVDNARHVACLLTQVEVDAEDPAFQNPTKPVGPFFTKDEADALTKELGWLMREDSG
                     RGWRHVVPSPRPRHIVDLSLIQVLARRGTVVVAGGGGGIPVIRGPKGVRHGVAAVIDK
                     DLTSAHMANVLDIRHLMILTAVSKVAVNYGKPDQRFLDRVSLRELKALQAEGHFPPGS
                     MGPKVAAAIRFLEGGGERVIIGHLEEAMAALRGET"
BASE COUNT          326 a          801 c          787 g          298 t
ORIGIN      
        1 ggcagacagc gaggcagttg cccgggatgc cctcgcggcc gccgtggcgg aactcgacaa
       61 accgcgggcc tccgcggcgg gggcacaggc gtggaatccc cgctcgctcc gcggcgccct
      121 caaggccatg cccgacgcga acctcgcact catctcggtt cccggcgact tcgcggccgc
      181 cgaagcgcgc aaggccctgc gccgcggcct caacgtcatg atcttcagcg acaacgtgcc
      241 ggtcgagcag gaggtcgcgc tgaagcagga agggcgcgcc ctcgggcgcc tcgtcatggg
      301 acccgattgc ggcacggcga tcatcggcgg cgtgccgctc gcgttcgcca atcgcgtccg
      361 gcgcggcgac atcggcgtcg tcggcgcgtc cggcacgggc atgcaggagg tcacgagcct
      421 gatcagcgag gcaggcggcg gcatctcgga ggcgatcggc gtcggcgggc gcgacctcag
      481 tgcgccagtc ggcggcatca gcacgctcat ggccatcgag gcactcgacg ccgatccggc
      541 gacacggcgc atcgtcctcg tctcgaagcc gccgcacccc gaggtcgccc gggccatcct
      601 ggcgcgcgtc ggggaaagcg ccaagcgctt cacgatctgc ttcctgggcg gcagcgcgac
      661 tgagctgccg ccgaatgcga cgttcgcccc gacgctgcgg gacgccgccg aggacgcgtt
      721 gggcggcatg gcgatcgccg ccgggttcga gcagccggcg aagcctgccc ggcccgggcg
      781 cgtggtcggc cttttctccg gagggacgct gtgcgccgag gcgcagctga tcctgctcgc
      841 ggcaggtcgc cgcgtcgtct cgaacgcgcc cgttcccggc gcgaggcgga gcaatgagga
      901 gggggcgacg gatcgcatcg tcgatctcgg cgccgacgag ttcaccaggg gccgcccgca
      961 tccgatgatc gacccgacgg tgcgggacga ggaactgcgc aaggccctcg gcgatccggg
     1021 cgtggcggtg gtgctggtgg actgcatcat cggcttcggc gccaacgccg atccggccgg
     1081 ccaccttgcg gctctcgtgg cagcagctgg cgacggcgcg ccacccgtcc tcgcctcggt
     1141 cactggaacg gaaggcgacc cgcaggtgcg ctcgcagcgg atcgcgatcc tcgagcgcgc
     1201 cggcgtgatc gtcgcgccct cgaacgcgca cgccgccgag ctcgccctct ccctgtgccg
     1261 cgcgtgagaa gcgcacaacc gtgaccgacg cgctcccatc ccgtctcctc gtcgccatcg
     1321 gcggcaatgc cacgcacccg gagaacatcc gcggcacctc ggacgagcag aaggaacttg
     1381 cggcgcgcac cgcgcaggcc ctgcttcccc tggcgcagct cgacaacgag ctgatcctca
     1441 cgcacggcaa cggccccgtg gtgggcaaga tcctgatgcg gcaggcgctc acctcgcagc
     1501 gcatcccgcc gatgtcgctc gacatttgcg tggcccacag ccaggggggc atcgcctacc
     1561 tcctcgtgca ggcactcgag aacgccctgc gcgaggtcga caacgcgcgc cacgtcgcct
     1621 gcctgttgac ccaggtcgag gtcgacgccg aggacccggc attccagaac ccgacgaagc
     1681 ctgtcgggcc gttcttcacc aaggacgagg cggacgcgct gacgaaggag ctcggctggc
     1741 tcatgcgcga ggactcgggc cgcggatggc gccacgtggt gccgtcgccg cggccgcggc
     1801 acatcgtcga tctgtccctc atccaggttc tcgccaggcg gggcaccgtc gtcgtcgccg
     1861 gcgggggagg gggcatcccg gtgatccgcg ggccgaaggg cgtacgccac ggcgttgccg
     1921 ccgtgatcga caaggacctc acgtccgcgc acatggcgaa cgtcctcgac atccgccacc
     1981 tcatgatcct gacggcggtg tcgaaggttg cggtgaacta cggcaagccc gatcagcgct
     2041 tcctcgaccg ggtctcgctg cgcgagctca aggcgctgca ggcggagggg cacttcccgc
     2101 ccgggagcat gggcccgaag gtcgccgcgg cgatccggtt cctggagggc ggcggcgagc
     2161 gggtcatcat tggccatctc gaggaggcca tggcagcgct gcgcggcgag ac
//
LOCUS       DASQWN010000407         2048 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1261268, whole genome shotgun sequence.
ACCESSION   DASQWN010000407 DASQWN010000000
VERSION     DASQWN010000407.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2048)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2048)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2048
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1261268"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(631..1104)
                     /locus_tag="VE686_07735"
     CDS             complement(631..1104)
                     /locus_tag="VE686_07735"
                     /inference="COORDINATES: protein motif:HMM:NF012415.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CAP domain-containing protein"
                     /protein_id="HYY84375.1"
                     /translation="MRLALALACVLVAPLLASCSTDVAKRVPSNQVATSTGEAGEAAA
                     LISRYRVAQGLSPVTADPRLSKAAEVQARAVAEAGELSHGAFATRMASLGIGGASAEN
                     LTAGPRSVGAAVASWKASPRHNDNLLMPEARHVGLARADTPGAGYGRYWALVLAQ"
     gene            1461..1670
                     /locus_tag="VE686_07740"
     CDS             1461..1670
                     /locus_tag="VE686_07740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012335192.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005829 - cytosol [Evidence IEA];
                     GO_function: GO:0001072 - transcription antitermination
                     factor activity, RNA binding [Evidence IEA];
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0003723 - RNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cold-shock protein"
                     /protein_id="HYY84376.1"
                     /translation="MTTGTVKFYNDQKGFGFIQPDDGGKDVFVHATALERAGIRGLRE
                     GEKVTFETETDQRSGKIAVSNIQAS"
     gene            1772..1960
                     /locus_tag="VE686_07745"
     CDS             1772..1960
                     /locus_tag="VE686_07745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009762613.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY84377.1"
                     /translation="MHKFRKGESVRLSRGRFPDRTGSGVYEVVRLLPEAEGEFQYRIK
                     AAGTQTERMVREGEIQPA"
BASE COUNT          330 a          715 c          699 g          304 t
ORIGIN      
        1 gagcgcgggg tgcgccggga cgggtccgcg gcgcaggatc cgcctcgcgg gcttggagcc
       61 cgcgggcggc agggatccat ctgcggtgtg tgacgccgcg gatggcaggg ccagggccca
      121 ggggccaggt gcctggcgga cccggtcccg gaacaccccg cgctcggcgg cgccttgatc
      181 cctggcctcg cgcttcggct cctcgcgtgg ggagccttaa gcgcgtctcc gcgcggaccc
      241 acccttcagg aggatgggac ggacgaggcc tccgccaagg ccgggggcac cccctggaag
      301 gtgccggatc cggggaggcg gggaaccctg agttctcccg ggctgtgtcg tcccgggctc
      361 agcgccgcat caactacgag agagctttca gcctcgcagc cgtcacctct cccaagccac
      421 cgcccgtctc ggctccgggc cttttgagcc cgaaccctcc tcgcgcgatg ccgccccacg
      481 accagacacc tccggaggtg cccctctgcc gggcgggacg acgcaactaa agtcataaat
      541 taagaagatt gtcaagccgc gtggcacgct cacgcgtgcg ccgcaccgac cgtcattcct
      601 tccgggttgc gccgttccgg tcgcctgcgg ctattgggcg agcaccaggg cccagtagcg
      661 cccgtagccg gctcccggcg tgtcggcgcg ggcgaggccg acgtggcggg cttcgggcat
      721 gagcaggttg tcgttgtggc gtggcgaggc tttccagctc gccaccgcgg ccccgacgga
      781 gcgcggcccg gccgtgaggt tctcggccga ggcgccgccg atgcccaacg acgccatgcg
      841 ggtcgcaaag gcgccatgcg agagctcgcc ggcctcggcg acggcccgtg cctgcacctc
      901 ggcggccttg ctgagccgcg ggtccgccgt cacgggcgag agcccctgcg cgacgcggta
      961 gcgcgagatg agggccgcgg cctcgcccgc ctccccggtg ctcgttgcga cctggttcga
     1021 gggaacgcgc ttcgccacgt cggtcgagca tgacgcaagc agcggggcga caagaacgca
     1081 cgcaagagcg agggcaagac gcatcgcgaa gaatctccgg caggcgcggc tctatagcgg
     1141 caccggacgc gcgagagtag tgggtcgcag cgcctccggc gtgcgcggca ggcccaaaga
     1201 cccgatcgac cggagatctt cgccggtccg gcctgagcca tccggtcttt tcgatgatga
     1261 ttcagcccgt tgaggcacag caccttgcca aacgagcctc ggctaactat gtcgtatcta
     1321 tcgacttttg gccggacaac tgggccgctt cgcctcgcac tgccgggcgc acgttcagac
     1381 ttctctcaaa aatcgacgaa ccgaaacgct cgcgtccaaa cgcggcgttc atgtgcgcac
     1441 gccagtgaaa gggcatcgta atgaccaccg gaaccgtgaa gttctacaac gatcaaaaag
     1501 gcttcggctt tatccagccg gacgacggcg gcaaggacgt gttcgtccac gcgacggcgc
     1561 tcgagcgcgc cggcatccgc ggcctgcgcg agggcgagaa ggtcaccttc gaaacggaga
     1621 ccgatcagcg ttcgggcaag atcgcggtct cgaacatcca ggccagctaa ggcgctgttt
     1681 tcacgacaag gtgccgccct ccggggcggc acctttcttg tttgcgggcc gctcgagcgg
     1741 gtctgctcga ctgaccgaaa gaggatcagc aatgcacaag ttccgaaagg gcgagagcgt
     1801 gcggctgtcg cgcggccgtt ttcctgaccg caccggctcc ggcgtctacg aagtggtgcg
     1861 cctgctcccc gaggcagagg gagagttcca gtaccgcatc aaggcagccg ggacgcagac
     1921 cgagcgcatg gtgcgcgaag gcgagatcca gccagcctga cccgtctcag ctcgcctccc
     1981 ctgcgccgcc gctctcgagg gccgcacgca gctgcccgtc tgcgccggcg agcgccgcct
     2041 ccgcctcc
//
LOCUS       DASQWN010000408         2187 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1460272, whole genome shotgun sequence.
ACCESSION   DASQWN010000408 DASQWN010000000
VERSION     DASQWN010000408.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2187)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2187)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2187
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1460272"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(66..596)
                     /locus_tag="VE686_07750"
     CDS             complement(66..596)
                     /locus_tag="VE686_07750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009764533.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0016780 - phosphotransferase activity, for
                     other substituted phosphate groups [Evidence IEA];
                     GO_process: GO:0008654 - phospholipid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CDP-alcohol phosphatidyltransferase family
                     protein"
                     /protein_id="HYY84378.1"
                     /translation="MTIPNIITIGRLIIVPFVVMMIGQGRWGIAFVLFVVAGISDAVD
                     GFIAKRFDMRSEFGAYIDPLADKALLVSIYVTLSVVGVLPAWVAVLVVSRDIMIVAAI
                     LVSWLMDRPVAIKPLIVSKLNTGAQIAFAALVLSANAFGLDFDGIGTAGMWIVAALTV
                     ASAAAYLTRWLRHMAP"
     gene            724..1791
                     /gene="purM"
                     /locus_tag="VE686_07755"
     CDS             724..1791
                     /gene="purM"
                     /locus_tag="VE686_07755"
                     /EC_number="6.3.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012334875.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004641 -
                     phosphoribosylformylglycinamidine cyclo-ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006189 - 'de novo' IMP biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0009152 - purine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine cyclo-ligase"
                     /protein_id="HYY84379.1"
                     /translation="MAQDPRNGLTYADAGVDIDAGNAMVEAIKPLVRATRRPGADAEI
                     GGFGGLFDLKAAGFSDPILVAANDGVGTKVKIAIDTGIHDTIGIDLVAMCVNDIVVQG
                     AEPLLFLDYFATGKLAPEVGVAIVKGIAEGCRRSGCALIGGETAEMPGLYARGDYDLA
                     GFAVGAAERGTLLPRGDVAPGDVLLGLPSSGVHSNGFSLVRRIVEASGLPWDAPAPFA
                     PGRTLGEALLEPTRIYVKPLLQALRATGGIKALAHITGGGFPDNIPRVLPDGTSVRLD
                     LPAIPVPPVFGWLARTGGVSETEMLRTFNCGIGMVVVVARADVDTVRQALEAAGEPAV
                     VIGEVTAQAEPRVATAGALKL"
     gene            1793..>2187
                     /gene="purN"
                     /locus_tag="VE686_07760"
     CDS             1793..>2187
                     /gene="purN"
                     /locus_tag="VE686_07760"
                     /EC_number="2.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012334876.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004644 - phosphoribosylglycinamide
                     formyltransferase activity [Evidence IEA];
                     GO_process: GO:0009152 - purine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylglycinamide formyltransferase"
                     /protein_id="HYY84380.1"
                     /translation="MAGRRRVAVLISGRGSNMASLIEAAQDPAYPAEIVLVVSNRPDA
                     GGLERARAAGIATAVVDHKGHPDRASFDAALDATLREHGIEIVCLAGFMRILTPGFVE
                     SWAGRMLNIHPSLLPAFKGTDTHARALAAG"
BASE COUNT          329 a          801 c          764 g          293 t
ORIGIN      
        1 gaaccagaag gtggcgtggc gcgcgaacgc gcttcggcgc ggctcggagc ctggcgtcag
       61 cggcgtcatg gcgccatgtg ccgcagccag cgcgtgaggt aggccgccgc cgaggcaacc
      121 gtgagggcgg cgacgatcca catgccggcg gtgccgatgc cgtcgaagtc gaggccgaac
      181 gcattggcgc tcaagaccag ggccgcgaag gcgatctgcg caccggtgtt cagcttcgac
      241 acgatgagcg gcttgatggc gacgggccgg tccatgagcc acgacacgag gatcgccgcg
      301 acgatcatga tgtcccgcga cacgacgagg acggcgaccc acgccggcag gacgccgacg
      361 accgacagcg tgacgtagat ggagacaagg agggccttgt cggcgagcgg atcgatgtac
      421 gcgccgaatt cgctgcgcat gtcgaagcgc ttggcgatga agccgtcgac cgcatccgag
      481 atgcctgcga ccacgaacag cacgaacgcg atcccccacc gcccctgccc gatcatcatg
      541 acgacgaacg gcacgatgat caggcgtccg atggtgatga tgttggggat ggtcatgggg
      601 cgccgctcag gccgggcact ctaaggagcc gggccgcgcg acggaagggt gcggcgaggg
      661 tttaatccag tcccttgcgc cccgcgcgcc gcggccttac tgcgcaggcg attgggaggc
      721 ggcatggcgc aagatccgag gaacggcctc acctacgccg acgccggggt cgacatcgac
      781 gccggcaacg ccatggtcga ggcgatcaag ccgctcgtgc gcgcgacgcg gcggccgggc
      841 gccgacgccg agatcggcgg cttcggcggg ctgttcgacc tcaaggccgc gggcttctcc
      901 gacccgatcc tcgtcgccgc caacgacggc gtcggcacca aggtcaagat cgccatagac
      961 accggcatcc acgacaccat cggcatcgac ctcgtcgcca tgtgcgtcaa cgacatcgtc
     1021 gtgcagggcg ccgagcccct cctgttcctc gactatttcg ccaccggcaa gctcgcgccc
     1081 gaggtcgggg tcgccatcgt gaagggcatc gccgagggct gccgccgctc cggctgcgcg
     1141 ctcatcggcg gcgagacggc ggagatgccg ggcctctatg cgcgcggcga ctacgacctc
     1201 gccggcttcg ccgtcggcgc ggccgagcgc ggcacgctcc tgcccagggg cgacgtggcg
     1261 cccggcgacg tgctcctggg actgccctcc tcgggcgtgc actcgaacgg cttctcgctg
     1321 gtgcgccgca tcgtcgaggc ctcgggcctc ccgtgggacg cgccggcgcc cttcgcgccc
     1381 ggccgaacgc tcggcgaggc cctgctcgag ccgacgcgca tctacgtgaa acccctgctc
     1441 caggcgctgc gggccaccgg cggcatcaag gcgctcgccc acatcaccgg cggcggcttc
     1501 cccgacaaca tcccgcgcgt gctgcccgac ggcacaagcg tgcgcctcga tcttcccgcc
     1561 attccggtgc cgccggtgtt cggctggctg gcgcggacag gcggcgtctc ggagaccgag
     1621 atgttgcgca ccttcaactg cggcatcggc atggtcgtgg tcgtcgcgcg ggccgacgtg
     1681 gacaccgtca ggcaggccct cgaggcggca ggcgagcccg cggtcgtcat cggcgaggtc
     1741 acggcgcagg cggagccccg cgtcgccacc gccggcgccc tgaagctctg acatggcggg
     1801 acgccgccgc gtcgccgtcc tgatctcggg ccggggctcc aacatggcct ccctgattga
     1861 ggccgcgcag gatcccgcct acccggccga gatcgtgctc gtggtctcca accgcccgga
     1921 cgccggcggc ctcgagcgcg cccgcgccgc cggcatcgcg acggccgtcg tcgaccacaa
     1981 gggccacccc gaccgggcga gcttcgacgc ggccctcgac gcaaccctgc gcgagcacgg
     2041 catcgagatc gtctgcctcg ccggcttcat gcgcatcctg acgcccggct tcgtcgagtc
     2101 ctgggccggg cgcatgctca acatccaccc gtccctgctg ccggccttca agggcaccga
     2161 cacgcacgcg cgggcgctcg cggcggg
//
LOCUS       DASQWN010000409         2092 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_827992, whole genome shotgun sequence.
ACCESSION   DASQWN010000409 DASQWN010000000
VERSION     DASQWN010000409.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2092)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2092)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2092
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_827992"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..363)
                     /locus_tag="VE686_07765"
     CDS             complement(<1..363)
                     /locus_tag="VE686_07765"
                     /inference="COORDINATES: protein motif:HMM:NF012655.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HYY84381.1"
                     /translation="MGATSDQRDGRTVRAERTRQALVDSLLGLLDEGHMTPTAAAIAA
                     RAGVSERSVFQHFPDREALFEAVAREQYARVVPTLVPVDASLPLPERIDQFARQRAYL
                     YERVGGVRRAALLIEHESG"
     gene            complement(645..1610)
                     /locus_tag="VE686_07770"
     CDS             complement(645..1610)
                     /locus_tag="VE686_07770"
                     /EC_number="1.-.-.-"
                     /EC_number="1.4.3.5"
                     /inference="COORDINATES: protein motif:HMM:NF013412.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004733 - pyridoxamine phosphate oxidase
                     activity [Evidence IEA];
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_process: GO:0008615 - pyridoxine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxamine 5'-phosphate oxidase family
                     protein"
                     /protein_id="HYY84382.1"
                     /translation="MTATLPLEVQQVFDRFITTEFTTVDGRGQPITWPLTPYYQPGDT
                     CIDVTTGLGYPKKAHDARANPKVGLLFSDPTGSGLQNPPQVLVQGTADVDDRDLDANR
                     ERYKREIAVKLPAAQADMPPKVFDRFLHWYLTRVYIHVRPERIYVWHDGDPAREPQLF
                     DTHMEEVRSGHDEEPDAELADAAGGAVVWDERMDELGARYRQAVVSLVSPDGFPFSVR
                     LPVEVDREARRVRLGGAPVGVPWQPGLACIAAHDHGEDFRWQRNFQVRGDLIEEDGAW
                     ALVPRKLVGGFELPPGGVVARVRLNMKKLRRFRKIAKRELAARGR"
     gene            complement(1776..>2092)
                     /locus_tag="VE686_07775"
     CDS             complement(1776..>2092)
                     /locus_tag="VE686_07775"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY84383.1"
                     /translation="YTDAEIDAMQGTPAWEARLAAAPTVPRELRAEQAYGMADLRLGD
                     LGAPVLLLVGSESPGWARRSTEAYAAAIRGAGVHTLEGQGHGASVSAPGLLASELTGF
                     FS"
BASE COUNT          307 a          744 c          736 g          305 t
ORIGIN      
        1 gccggactcg tgctcgatca gaagcgcggc gcgacgtacg ccgccgacgc gctcgtagag
       61 gtaggcccgc tggcgcgcga actggtcgat gcgctccggc agcggcaggc tcgcgtcgac
      121 cgggacgagc gtcggcacca ctcgcgcgta ctgctcgcgc gcgaccgcct cgaacagcgc
      181 ctcgcgatcg gggaagtgct ggaacaccga ccgttccgag acgcccgccc gcgcggctat
      241 ggccgcggcg gtgggagtca tgtgcccctc gtcgagcaag cccagcagcg agtcgacgag
      301 cgcctggcgc gtgcgctcgg cccggacggt gcggccgtcg cgctggtcgg aggtggcgcc
      361 caccgcgaca gcataggagc gggtgtcagg gcacgcaatc tcacaaaacg tcgcaacgtg
      421 cgggatggtt tgagcgggcc cccttgacgt gcggttgcac ccctggtcta ctgattctcg
      481 agacgcggac ggagcgcaaa gagcgaagcc agaggttgtg aggctcgcca cgccagcacg
      541 tcggcttcgg ccgacgagcg cgtacctcaa agcgcgaagt ctgcgtctct cttatcgccc
      601 cggcctcggt cggggcgatt tgcgttccag ggccggtttt cgcctcagcg gccgcgcgcc
      661 gccagctcgc gcttggcgat cttgcggaag cggcgcagct tcttcatgtt cagccgcacg
      721 cgggcgacga cgccgcccgg cgggagctcg aacccgccca cgagcttgcg cgggaccagg
      781 gcccaggcgc cgtcctcctc gatgaggtcg ccgcgcacct ggaagttgcg ctgccacctg
      841 aagtcctcgc cgtggtcgtg cgccgcgatg caggcgagac cgggctgcca ggggacgccg
      901 accggggccc cgccgagccg cacgcgcctc gcctcgcgat ccacctcgac cggcagccgc
      961 acggagaacg ggaagccgtc gggggagacg aggctgacaa ccgcctggcg gtagcgggca
     1021 ccgagctcat ccatccgctc gtcccacacc acggctccgc cggcggcgtc cgcgagctcg
     1081 gcgtcgggct cctcgtcgtg ccccgagcgg acctcctcca tgtgcgtgtc gaacagctgc
     1141 ggctcgcgcg ccgggtcgcc gtcgtgccac acgtagatgc gctccgggcg cacatggatg
     1201 tacacgcgcg tgagatacca gtgcaggaag cggtcgaaga ccttcggcgg catatcggcc
     1261 tgcgcggcgg gcagcttcac ggcaatctcg cgcttgtagc gctcgcggtt ggcatccagg
     1321 tcgcgatcgt cgacgtccgc ggtcccctgg acgaggacct ggggcgggtt ctgcaggccg
     1381 ctgccggtcg ggtcggagaa cagcagcccc accttggggt tcgcgcgggc gtcatgggcc
     1441 ttcttgggat agccgaggcc ggtcgtcacg tcgatgcagg tatcgcccgg ctggtagtag
     1501 ggcgtgaggg gccacgtgat cggctggccc cgcccgtcga ccgtcgtgaa ctcggtcgtg
     1561 atgaaccggt cgaagacctg ctgcacctcg agcggaagcg tggctgtcat gaggcgattc
     1621 aatcacgccg acgcgtgccc caatgtccgg cccagagctc gattcctcaa gccaggcgcc
     1681 agattggccg atcagcttca aggaccgccg tacttcatcg cgcccaccga atcggcctgg
     1741 cgcatcgtgc ggcagaacga gcaggttccg gcgcgctagg aaaagaagcc ggtcagctcc
     1801 gacgccagca gcccgggcgc gctgacggac gccccgtgtc cctgtccctc gagcgtgtgc
     1861 accccggcgc cccggatcgc cgccgcgtag gcctccgtcg agcgccttgc ccagccgggg
     1921 ctctccgaac cgaccaacag gagcaccggg gcgcccaggt cgccgagccg taggtcagcc
     1981 atgccatagg cctgctcggc tcgcaactca cgcggcacgg tcggcgccgc cgcgaggcgc
     2041 gcctcccagg cgggggttcc ctgcattgcg tcgatctcgg cgtcggtgta cc
//
LOCUS       DASQWN010000410         4739 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_72206, whole genome shotgun sequence.
ACCESSION   DASQWN010000410 DASQWN010000000
VERSION     DASQWN010000410.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 4739)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4739)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4739
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_72206"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..783)
                     /locus_tag="VE686_07780"
     CDS             complement(<1..783)
                     /locus_tag="VE686_07780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015669690.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016627 - oxidoreductase activity, acting
                     on the CH-CH group of donors [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase family protein"
                     /protein_id="HYY84384.1"
                     /translation="MDLRFTDEELAFRQEVRAFMKSALPERLRRKMIDRHHPSKQDLV
                     DWQQTLNAKGWAVPHWPVEWGGTGWDPVRQYIFQDELQQAPAPSPLPFNTSMVGPVII
                     AFGSEEQKRRFLPRIANLDDWWCQGFSEPGAGSDLASLKTTAKRDGDHYVVNGQKTWT
                     TLAQHADWIFCLVRTDMAAKKQEGISFLLIDMKTPGITVRPIETIDGGHEINEVFLDD
                     VRVPIENLVGQENKGWDYAKFLLGNERTGIARVGISKARVRRL"
     gene            complement(797..2863)
                     /locus_tag="VE686_07785"
     CDS             complement(797..2863)
                     /locus_tag="VE686_07785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012330224.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0070403 - NAD+ binding [Evidence IEA];
                     GO_process: GO:0006631 - fatty acid metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-hydroxyacyl-CoA dehydrogenase NAD-binding
                     domain-containing protein"
                     /protein_id="HYY84385.1"
                     /translation="MTAINPVVDLTPEGEVAVITVNSPPVNALSAAVRDGIRQALERA
                     TEDTAVKAIVIACAGRTFIAGADIREFGKPPQGIPLPELCEIIENSAKPVVAAIHGTA
                     LGGGLEVALACHYRVAVPSAKCGLPEVKLGLIPGAGGTQRLPRIVGVERALEMITSGE
                     HVGAKAAKDIGLVDTLAPEDRLRETAIMVASEGKPPRRVRDMNDKMEAARGKADIFAE
                     FRKANARKFRGFEAPEACIKAIEAAVTLPFDEGMRRERELFRGLVTGTQSAAQRYVFF
                     AERQVAKIPDVPDDTATIPIKRVGVIGAGTMGGGISMNFLNAGIPVTIVETKQDALDR
                     GLGVIRRNYENTAKKGRLTSQDVETRMGLIGGTLELEQLADCDLVIEAVFENMDIKKE
                     VFGKLDRIVKQGAILASNTSYLDIDEIAATTKRPEFVIGMHFFSPANVMRLLEVVRGA
                     KTSKEVVATAMQLARKIGKVGVLVGVCHGFVGNRMLAQRQREANKLILEGATPWDVDR
                     VVYDFGMPMGPFAMSDLAGLDIGWSRETSKGETVRDILCEMDRRGQKTSAGFYDYDEN
                     RRARPSKVTEEIIARIAERQGIKRRSISDDEILERCTYPMINEGAKILEEGKAIRASD
                     IDIVWINGYGWPVYRGGPMFYGDTVGLKTVLSRMEGFEREMGPELKPSELLRRLANEG
                     KRFQDL"
     gene            2983..3750
                     /locus_tag="VE686_07790"
     CDS             2983..3750
                     /locus_tag="VE686_07790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018322225.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HYY84386.1"
                     /translation="MSLFDLTGKVAVVTGSSRGIGRAIAERLAEHGAKVVISSRKQPA
                     CEEVAGAINAARGAGTALAIAANISSKEELKRLVDETTRAFGRIDILVCNAASNPYYG
                     PQAGIADEQFRKILDNNIVANHWLISFAAPQMIERKDGAIIIVSSVGGLKGSPVIGAY
                     CISKAADLQLARNLAVEYGAHNVRVNCIAPGLIKTDFARALWENPETLKAYNARTPLR
                     RIGDPDEIAGAAVFLASKAGSFMTGQAIVIDGGQTIT"
     gene            3750..>4739
                     /locus_tag="VE686_07795"
     CDS             3750..>4739
                     /locus_tag="VE686_07795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018262912.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I adenylate-forming enzyme family protein"
                     /protein_id="HYY84387.1"
                     /translation="MSDGSAKPWPAVSFAEATARLTSPGAPFEMEEREIRGVSTRVWK
                     HALPTLRELFLQGRAFGDRTFLVYENDRATFEGFARASVAIAHALETEGVRKGDRVAI
                     AMRNLPEWPAAFYGAILAGAIATPLNAWWTGPELEYALADCGAKVAIVDAERLQRMSE
                     HLHGCPELKRVFVSRLAEEVAHPLVRPLEDVTGPVNAWGALPDRPLPQIALEPDDDAT
                     LFYTSGTTGKPKGALGTHRNSMSTLLAYPYSAARTFVRRGEPVPAPDPNAPQKATLLS
                     IPFFHTTGCQASLASAMSRGVKIVMARRFDPEQAFQLIERERINSGGGVPAIAW"
BASE COUNT          714 a         1670 c         1563 g          792 t
ORIGIN      
        1 cagccggcgc acccgcgcct tggaaatgcc gacgcgggcg atgccggtac gctcattgcc
       61 gagcaggaac ttggcatagt cccagccctt gttctcctgg ccgaccaggt tctcgatcgg
      121 cacgcgcacg tcgtcgagga agacctcgtt gatctcgtgg ccgccgtcga tggtctcgat
      181 cggccgcaca gtgatgcctg gcgtcttcat gtcgatgagg aggaaggaga tgccctcctg
      241 cttcttcgcc gccatgtcgg tgcgcacgag gcagaagatc cagtcggcgt gctgggcgag
      301 cgtcgtccag gtcttctggc cgttgacgac gtaatggtcg ccgtcgcgct tcgcggtcgt
      361 cttgagcgag gcgaggtccg agccggcgcc cggttccgag aatccctggc accaccaatc
      421 gtcaaggttg gcgatgcgcg gcaggaagcg gcgcttctgc tcctccgagc cgaaggcgat
      481 gatcaccggc ccgaccatgc tggtgttgaa gggcagcggc gagggcgcgg gcgcctgctg
      541 cagctcgtcc tggaagatgt attgccggac cgggtcccag cccgtaccgc cccactccac
      601 cggccaatgc ggcaccgccc agcccttggc gttcagcgtc tgttgccagt ccacgaggtc
      661 ctgcttcgaa gggtggtggc ggtcgatcat cttccggcgc aggcgctcgg gcagcgcgct
      721 cttcatgaag gcgcgcacct cctgccggaa agccagctcc tcgtcggtga accgcaggtc
      781 catggctttc ctccgcttac agatcctgga agcgcttgcc ctcgttggcc agccggcgga
      841 gcagctcgga gggcttgagc tccgggccca tctcacgctc gaagccttcc atccgcgaca
      901 gcaccgtctt gagcccgacc gtgtcgccgt agaacatcgg cccgccccgg taaacgggcc
      961 agccgtagcc gttgatccac acgatatcga tatcggaggc gcggattgcc ttgccctcct
     1021 cgaggatctt cgcgccctcg ttgatcatcg gataggtgca gcgctcgagg atctcgtcgt
     1081 ccgagatgga gcggcgcttg atgccctgcc gctccgcgat gcgggcgatg atctcctcgg
     1141 tcaccttaga cggtcgcgcg cggcggttct cgtcgtagtc atagaagccg gcgctggtct
     1201 tctggccccg gcggtccatc tcgcacaaga tgtcgcgtac ggtctcgccc ttggaggtct
     1261 cgcgcgacca tccgatatca aggcccgcga ggtcgctcat ggcgaagggg cccatgggca
     1321 tgccgaagtc gtagacgacg cggtcgacgt cccagggcgt cgcgccctcg aggatgagct
     1381 tgttcgcctc gcgctgccgc tgcgccagca tgcggttgcc gacgaagccg tggcacacgc
     1441 cgacgagcac gccgaccttg ccgatcttgc gcgcgagctg catggcggtc gcgacgacct
     1501 ccttcgaggt cttggcgccc cgcaccacct cgagcaggcg catgacgttc gccggcgaga
     1561 agaagtgcat cccgatcacg aactcggggc gcttcgtcgt ggcggcgatc tcgtcgatat
     1621 cgagatagga cgtgttgctg gcgaggatcg cgccctgctt gacgatgcgg tcgagcttgc
     1681 cgaacacctc cttcttgatg tccatgttct cgaacaccgc ctcgatcacg aggtcacagt
     1741 ccgcgagctg ttcgagctcg agcgtgcccc cgatcaggcc catgcgggtc tccacgtcct
     1801 gtgacgtgag gcggcccttc ttggccgtgt tctcgtagtt gcggcggatg actccgaggc
     1861 cgcggtccag ggcgtcctgc ttcgtctcga caatggtgac cgggatgccg gcgttgagga
     1921 agttcatcga gatgccgccg cccatggtcc cggccccgat gacaccgacc cgcttgatcg
     1981 ggatcgtggc tgtgtcgtcc ggcacgtcgg ggatcttggc gacttggcgc tcggcgaaga
     2041 aaacatagcg ctgcgctgcc gactgcgtcc ccgtgaccag gccgcggaag agctcgcgct
     2101 cgcgcctcat accttcgtcg aagggcaggg tcaccgccgc ctcgatcgcc ttgatgcagg
     2161 cctccggggc ctcgaagcca cggaattttc gtgcgttcgc cttgcggaat tcggcgaaga
     2221 tgtcggcctt gccgcgcgcc gcctccatct tgtcgttcat gtcgcgcacc cggcgcggcg
     2281 gcttgccctc gctcgcgacc atgatcgccg tttcgcgcag tcgatcttcg ggcgccagcg
     2341 tgtcgacgag gccgatgtcc ttggcggcct tggcgccgac gtgctcgccc gaggtgatca
     2401 tctcgagcgc gcgctcgacg ccgacgatgc gcggcagacg ctgcgtcccg ccggcgcccg
     2461 ggatgagccc gagcttgacc tccggcaggc cgcatttcgc cgacggcacg gccacgcggt
     2521 aatggcacgc gagcgcgact tcgagaccgc cgccgagggc tgtgccgtgg atcgccgcga
     2581 cgaccggctt ggcgctgttc tcgatgatct cgcacagctc gggcagcgga atcccttgag
     2641 gcggcttgcc gaactcgcgg atgtcggcgc cggcgatgaa ggtccggccc gcgcaggcga
     2701 tgacgatggc cttcacggcc gtatcctccg tcgcgcgctc gagcgcctgc cggatgccat
     2761 cacgaacggc ggccgagagg gcgttcacgg ggggcgagtt caccgtgatg accgcgacct
     2821 cgccctcggg cgtcaggtcc acaacgggat tgatggcggt catggggctt cctcgctctt
     2881 ggctcagccc cgccgcgggg cttgcgcgga cgtgcttgcc gcggagcgat ttgagcttaa
     2941 ggtcgccggc aaaagcaagc agaacccacc cggagaaagc ccgtgtcgct cttcgacctg
     3001 accggaaagg tggcggtcgt caccggctcc tcgcgcggca tcggccgcgc catcgcggag
     3061 cgcctcgccg agcacggcgc caaggtggtg atctcgtcgc gcaagcagcc cgcctgcgag
     3121 gaggtcgcgg gcgccatcaa cgccgcccgg ggcgccggca ccgctctggc catcgccgcc
     3181 aacatctcgt cgaaggagga gctgaagcgc ctcgtcgacg agaccacccg cgcgttcggc
     3241 cggatcgaca tcctcgtctg caacgccgcc tcgaacccct attacgggcc acaggccggc
     3301 atcgccgacg agcagttccg caagatcctc gataacaaca tcgtcgccaa ccactggctc
     3361 atcagcttcg ccgcgccgca gatgatcgag cgcaaggacg gcgccatcat catcgtgtcg
     3421 tcggtgggcg gcctgaaagg gtcgccggtg atcggcgcct actgcatctc caaggcggcg
     3481 gacctgcagc tcgcccgcaa cctcgcggtc gagtacgggg cgcacaacgt gcgggtcaac
     3541 tgcatcgcgc cgggcctcat caagaccgac ttcgcccgcg ccttgtggga gaaccccgaa
     3601 acgctgaagg cctacaacgc gcgcacgccc ctgcgccgga tcggcgaccc cgacgagatc
     3661 gccggcgccg cggtgttcct cgcctcgaag gccggatcgt tcatgaccgg gcaggccatc
     3721 gtcatcgacg gcggccagac gatcacctga tgagcgacgg ctccgccaag ccctggcccg
     3781 ccgtcagctt cgccgaggcc acggcgcggc tgacgtcgcc aggcgctccc ttcgagatgg
     3841 aggagcgcga gatcagaggc gtgagcaccc gcgtgtggaa gcacgccctg ccgaccctgc
     3901 gcgagctttt cctccagggg cgcgcgttcg gggatcgcac ctttctcgtc tacgagaacg
     3961 accgcgccac cttcgagggc ttcgcccgcg cctccgtcgc catcgcgcat gcgctcgaga
     4021 cggagggcgt gcgcaagggc gaccgcgtgg cgattgccat gcgcaacctg ccggaatggc
     4081 cggcggcctt ctacggcgcg atcctcgccg gcgcgatcgc gacgccgctg aatgcctggt
     4141 ggaccgggcc ggaactcgaa tatgcgctcg ccgactgcgg cgccaaggtc gccatcgtcg
     4201 acgccgagcg cctgcagcgc atgagcgagc acctgcacgg ctgcccggag ctcaagcggg
     4261 tcttcgtctc gcgtctcgcc gaagaagtcg cgcatcccct cgtgcggccc ctcgaggatg
     4321 tcaccggccc ggtgaacgcc tggggcgccc tgcccgatcg gccgctgccg cagatcgcgc
     4381 tcgagcccga cgacgacgcg accctgttct acacctctgg cacgaccggc aagcccaaag
     4441 gggcgctcgg cacgcaccga aactccatgt cgacgctcct cgcctacccg tactcggcgg
     4501 cgcgcacctt cgtgcgccgg ggcgagccgg tgccggcgcc cgatccgaac gcgccgcaga
     4561 aggcgaccct cctgtcgatc ccgttcttcc acacgaccgg atgccaggcg agcctggcct
     4621 ccgccatgtc gcgcggcgtc aagatcgtca tggcgcgccg cttcgacccc gagcaggcct
     4681 tccagctcat cgagcgcgag cgcatcaact cggggggcgg cgtgccggcc atcgcgtgg
//
LOCUS       DASQWN010000411         2971 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1063397, whole genome shotgun sequence.
ACCESSION   DASQWN010000411 DASQWN010000000
VERSION     DASQWN010000411.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2971)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2971)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2971
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1063397"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            172..513
                     /locus_tag="VE686_07800"
     CDS             172..513
                     /locus_tag="VE686_07800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019401040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metalloregulator ArsR/SmtB family transcription
                     factor"
                     /protein_id="HYY84388.1"
                     /translation="MVHAAAVDDVFHALSNPTRRKVLERLSVGPASVSELAAPFDMQL
                     PSFVQHLSVLERSRLIKSKKRGRVRTYEIAPERFRVVEDWLTARRRLWEARLDRFDQY
                     VKRLKEKEVES"
     gene            510..998
                     /locus_tag="VE686_07805"
     CDS             510..998
                     /locus_tag="VE686_07805"
                     /inference="COORDINATES: protein motif:HMM:NF019928.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SRPBCC family protein"
                     /protein_id="HYY84389.1"
                     /translation="MSTQVTVDPKLDFAIERFIDAPTRLVWEALTKPEHLKEWYMPKA
                     WGRVARAEMDVRPGGIFSIDIAVGDGREVPNLGCVLEVVPMERLVWTSMLFPGYRPAV
                     FDDIPITAIVTMESVGTGTRYVFTALHRDEADLEKNKASGFYQGTEIAIDQLVAHVKS
                     LN"
     gene            1012..1554
                     /locus_tag="VE686_07810"
     CDS             1012..1554
                     /locus_tag="VE686_07810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003587961.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008703 -
                     5-amino-6-(5-phosphoribosylamino)uracil reductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrofolate reductase family protein"
                     /protein_id="HYY84390.1"
                     /translation="MGKLVFGMMQSLDGFVAGAPGGRQLPPPGERLHRHFNDHVRGLA
                     GIIYGRRMYEVMRYWDDDQPDWGDVERDFAAAWRAKPKWAVSRSLEAVGPNATLVRDD
                     AGALVRALKAKLVGEIDVAGPELAGSLTALGLIDEYRLYFRPFILGGGKPYFAGPRPP
                     LHLVGAEAVGEDAVRLTYAT"
     gene            complement(1735..2229)
                     /locus_tag="VE686_07815"
     CDS             complement(1735..2229)
                     /locus_tag="VE686_07815"
                     /EC_number="3.5.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF013228.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RidA family protein"
                     /protein_id="HYY84391.1"
                     /translation="MAGASSRGIALVTPIVVAAGAVLALGCQRDTSGTTPRDGRRVIQ
                     AGPATGGLPYSPGILVGNTLYLAGTIGEDSSNHIVPGGIEAEARQALANVEVVLHAAG
                     MTLQDVTTVTVYITSFDDFAKFNEVYRQAFPTSPPARATVQVAALIGGAKVELQMTAV
                     KADP"
     gene            complement(2257..2412)
                     /locus_tag="VE686_07820"
     CDS             complement(2257..2412)
                     /locus_tag="VE686_07820"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY84392.1"
                     /translation="MSPRQWAGDHRRAPVDALEYLRVMFTVAIVLHPGAELLIGLAQE
                     LRQPKRV"
     gene            complement(2482..>2971)
                     /locus_tag="VE686_07825"
     CDS             complement(2482..>2971)
                     /locus_tag="VE686_07825"
                     /inference="COORDINATES: protein motif:HMM:NF015423.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="TRIC cation channel family protein"
                     /protein_id="HYY84393.1"
                     /translation="LRDLLLDRHPIFWIANPAYLWVILAATVVTLGYVRLWIASRRAL
                     LIADALGLAFFTIGGVEIAQQAGHSDLIAVLMGTITGVAGGVIRDVLLGEIPLIFRPG
                     RLYATAAIVGAALYVLLAGHGVAREAAALAGMGVIVALRLGAIYWRLELPAVSLPKDG
                     AG"
BASE COUNT          534 a          958 c          968 g          511 t
ORIGIN      
        1 ccgccaatgg atgagaacct ataacccgtg gccgaacgga gagagcggaa atcgacatcc
       61 cgacggccgg ctgcttcaag gtagccaata cttaggtatt gtcaaaagta ttcactggct
      121 gtagactccg tgagtccgga cggtcaaccc gagcatacgg atgggtcgga agtggttcac
      181 gctgcagccg ttgacgacgt ttttcacgcc ctgtccaacc cgactcggcg gaaagtcctg
      241 gagcgactgt cggttggacc cgccagtgtc agcgagctgg cggcaccctt cgacatgcag
      301 ctcccgtcgt tcgtgcagca cctctcggtg ctcgagcgca gccgcctgat caagtcgaag
      361 aagcgcgggc gcgtacgcac ctacgagatc gcgcccgaac ggttcagggt tgtggaggac
      421 tggctgaccg cgcgtcgtcg gttgtgggaa gctcgcctgg accggttcga ccaatacgtc
      481 aaaagactca aggagaagga agtcgaatca tgagcacgca ggtcaccgtc gatcccaagc
      541 ttgattttgc tatcgaacgg ttcatcgacg ctcccacgcg actggtctgg gaagcgttga
      601 cgaagccgga gcatctcaag gagtggtaca tgcccaaagc ctgggggcgc gtggcacgcg
      661 ccgaaatgga cgtgcgtccg ggcggcatct tcagcatcga catcgccgtg ggcgacggtc
      721 gggaagtgcc caatctcggc tgcgtcctgg aagtcgttcc gatggagcgc ctggtctgga
      781 cctccatgtt gttccccggc tatcgcccgg ccgtcttcga cgacattccg atcaccgcca
      841 tcgtcacgat ggagagcgtg ggaaccggca cgcgctacgt cttcacggcg ctgcaccggg
      901 acgaagcgga cctcgagaag aacaaggcga gcggctttta ccagggcacc gagatcgcca
      961 tcgaccagct cgttgcccac gtgaagtcgc tgaactagcc tgggcgatca catggggaag
     1021 ctcgtgttcg gcatgatgca atcgctcgat ggcttcgttg ccggtgctcc cggcggccgg
     1081 cagttgccgc cgccgggcga gcggctccat cgccatttca acgaccatgt ccgcggattg
     1141 gccgggatca tctacggccg gcgcatgtac gaggtgatgc gctactggga tgacgaccag
     1201 ccggactggg gcgacgtcga acgcgacttt gcggcagcct ggcgcgcgaa gccaaagtgg
     1261 gccgtgtccc gctcgctcga ggccgtgggg ccgaacgcca cgctcgtccg cgacgacgcc
     1321 ggagcgttgg tgcgagcgct caaggcaaag ctcgtcggtg agatcgatgt cgccggcccc
     1381 gagctggccg gcagtctcac ggccctcggc ctgatcgacg agtatcgcct ctacttccgg
     1441 ccgttcatcc ttggcggcgg caagccgtac ttcgccggtc ctcggccgcc acttcacctc
     1501 gtcggcgcgg aagccgtcgg tgaagatgcg gtgagattga catacgccac atgaggcagc
     1561 cgctcaacat cctgctgtgg gccgtcacgc attgccttgg agccgcgctg ctcgcgacca
     1621 tcatgctcgc ggccatcagc gcgcatatct tcatcctgca cgtaccaccc acggcaccgg
     1681 ccgttctggt gcttctgtcc ggcttcgcgg tctggggaga gtacggtggc ggcctcaggg
     1741 atcggccttc accgccgtca tctgaagttc gactttcgcc ccgccaatga gcgcggcgac
     1801 ctgcacagtg gctctcgcag gggggctggt cggaaaggcc tgccggtaga cctcgttgaa
     1861 tttcgcgaaa tcatcgaagc tcgtgatgta cacggtcaca gtggtcacgt cctgcaaggt
     1921 catgcccgcc gcatgcagaa cgacctccac gttcgcgagg gcctggcgcg cttccgcttc
     1981 gattccaccc ggaacgatat ggttcgatga atcctcgccg atcgtccccg ccagatagag
     2041 agtgttcccg acgaggatcc cggggctgta tggaagacct ccagtggctg ggcctgcctg
     2101 aatgacacgg cgtccgtctc gcggcgtggt accggatgta tcacgttggc agccgagagc
     2161 gagcacggcg ccagcagcga cgactatcgg tgtcacgagc gcgatgccgc gagaactggc
     2221 gcctgccacg gtagcctccg ggctcattga agggtcttag acgcgcttgg gctgcctcag
     2281 ctcctgggcg agcccgatga gaagttctgc ccccggatgt aggacgatcg ccacggtgaa
     2341 catgacgcgc aggtactcga gggcgtcgac cggggctctg cggtgatcgc cggcccactg
     2401 gcggggcgac aaatcgggca gctcgagccg gtgcgctgga cggtcatgac ttgctcccct
     2461 ggcatgtcgt cctgagcgga atcagccggc cccgtcctta ggtaagctga ccgccggcaa
     2521 ttcgagcctc cagtagatcg cgcccagtcg cagtgccacg atgacgccca tgcctgccag
     2581 ggccgccgcc tcccgggcga cgccgtggcc cgccagcagc acgtacagcg cggcgcccac
     2641 gatcgcggcc gtggcgtaca ggcggcccgg gcggaagatc agcgggatct cgccgagcag
     2701 cacgtcccgg atcactcctc ccgcgacgcc ggtgatcgtg cccatgagca ccgcaatgag
     2761 atccgagtgc ccggcttgtt gcgcgatctc gaccccgccg atggtgaaga acgccaaccc
     2821 gagggcatcg gcgatgagga gcgcgcgccg ggacgcgatc cagagccgca cgtagcccag
     2881 ggtcaccacc gtcgccgcca ggattaccca caggtacgca gggttggcga tccagaagat
     2941 gggatgccga tcgagcagca ggtcccgaag c
//
LOCUS       DASQWN010000412         3354 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_72316, whole genome shotgun sequence.
ACCESSION   DASQWN010000412 DASQWN010000000
VERSION     DASQWN010000412.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 3354)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3354)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3354
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_72316"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..496
                     /locus_tag="VE686_07830"
     CDS             <1..496
                     /locus_tag="VE686_07830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009763149.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0015803 - branched-chain amino acid
                     transport [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="branched-chain amino acid ABC transporter
                     permease"
                     /protein_id="HYY84394.1"
                     /translation="PSAWASSRWAFYLLTLAVVAAAVWALDRVIEAPFGYALRAARDS
                     ELRAEAIGLDVRRHRWLAFTLAGAAAGLAGGVYAFSRGSVDPTLLGIPTSVDALTMLL
                     LGGVQTVAGPLAGAAVLHALRDQIMPLTELWRMMLGLVIIALVLLFPRGLLGAVPARR
                     EDGP"
     gene            493..1239
                     /locus_tag="VE686_07835"
     CDS             493..1239
                     /locus_tag="VE686_07835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006610719.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HYY84395.1"
                     /translation="MTLLTAEGLCKAFGGVTAARDVGFAVGRGEKVALIGPNGAGKST
                     VFNMVGGQLRPDRGSVRLNGEDITGLAPYEIYRRKLARSFQITNIFPRLSVYENVRCA
                     VMWSRGQGYAFWRFIDGVRDVRERTEAVLERIGLERRRDVQAGLLTYAEQRALEIGLA
                     MAGEADMIMLDEPTAGMSHSETEHAVDLIRRITQGRTLLIVEHDMAVVFGLADRISVL
                     VYGKVIASDTPERIKANKAVQEAYLGTVPE"
     gene            1296..1991
                     /locus_tag="VE686_07840"
     CDS             1296..1991
                     /locus_tag="VE686_07840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011474577.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HYY84396.1"
                     /translation="MLAVSDLHAYYGKSHILQGVDLTVREGEIVSLLGRNGVGRSTTI
                     KTIMGQVPPQGSVRFKGREIAGLKPHEIAHLGLGYVPEERAIFPALTVRQNLILGEKS
                     GRTGGRWSMQDMFTLFPRLEERVDTPGGVLSGGEQQMLTICRTLMGDPDLIMIDEPTE
                     GLSPQMVERVGEMLGQIAARGVSILLVEQKLTIALRVATRLYVMGHGRIVFEGTPDEL
                     KGRADVRKEWLEV"
     gene            2086..>3354
                     /locus_tag="VE686_07845"
     CDS             2086..>3354
                     /locus_tag="VE686_07845"
                     /EC_number="2.3.2.2"
                     /inference="COORDINATES: protein motif:HMM:NF013206.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gamma-glutamyltransferase"
                     /protein_id="HYY84397.1"
                     /translation="MKNFQSNRGFRLTPTDDTPFHPRLFGRRGAVAAEHYLAAGAGID
                     IMKQGGNAIDAAVAAVLVEGVVNPQMHTIGGELPILIAVPGSTDIVCINGNMVAPERA
                     TPEAFLSRGFSKIPGDGIFAAGVPGAMGALLTALMRFGRLRFADVVAPALDLAREGFP
                     VHAGLLRQHGFGIAANAARFRTEWPGTAAVYLPGGRIPEEGEIIVNPKLADMFDYLAG
                     EEKRAGGSRETGIQAAFDGFYKGDVARAIVAYSDDKGGLLQRSDFERFEVPVERPVSL
                     SFEGVELYKCGPWTQGPAVLQTLSILKNFDLRALGHNSTAYVHTVVEAMKLAFADREQ
                     FYADPRHVDVPVEGLLSEAYGRARAALVGERADGALRPGNAWTGEALLPASERLGGSS
                     WGPGTVHVDAMDREGFTAAFTPSGAWIKSAE"
BASE COUNT          473 a         1231 c         1151 g          499 t
ORIGIN      
        1 gccctccgcc tgggcgtcgt cccggtgggc gttctacctc ctcaccctcg cggtcgtggc
       61 ggcagccgtc tgggcgctcg accgcgtgat cgaggcgccg ttcggctacg cgctccgggc
      121 ggcgcgggat tcggagctcc gggcggaggc gatcggcctc gacgtgcggc gccaccgctg
      181 gctcgccttc acgctcgcgg gcgcggccgc gggcctcgcg ggcggcgttt acgccttctc
      241 gcgcggctcc gtcgatccga cgctgctcgg gatcccgacc tcggtcgacg ccctgaccat
      301 gctcctcctc ggcggcgtcc agaccgtggc cgggccgctt gccggggcgg cggtcctgca
      361 tgccctgcgc gaccagatca tgccgctgac cgagctctgg cggatgatgc tggggctcgt
      421 catcatcgcc ctcgtgctcc tcttcccgcg cggccttctc ggggccgtgc cggcccggcg
      481 ggaggacggg ccatgacgct cctgaccgcc gaggggctct gcaaggcgtt cggcggcgtc
      541 accgccgcgc gggatgtcgg cttcgcggtc gggcggggcg agaaggtcgc gctgatcggc
      601 cccaacgggg ccggcaagtc gaccgtgttc aacatggtcg gcggccagct ccggcccgac
      661 cggggatcgg tccgcctcaa cggcgaggac atcaccggcc tcgcgcccta cgagatctac
      721 cgccgcaagc tcgcccgcag cttccagatc accaacatct tcccgcgcct ctccgtgtac
      781 gagaacgtcc gctgcgccgt gatgtggtcg cgcggccagg gctatgcctt ctggcgcttc
      841 atcgacggcg tccgcgacgt ccgcgagcgc accgaggcgg tgctggagcg catcggcctc
      901 gagcgccggc gcgacgtgca ggctggcctc ctcacctacg ccgagcagcg cgccctggag
      961 atcggcctcg cgatggcggg agaggccgac atgatcatgc tcgacgagcc gaccgccggc
     1021 atgagccaca gcgagaccga gcacgccgtc gacctcatcc ggcggatcac gcaggggcgt
     1081 acgctgctca tcgtcgagca cgacatggcc gtagtgttcg ggctcgccga ccgcatctcg
     1141 gtgctcgtct acggcaaggt catcgcgagc gacacgcccg agcgcatcaa ggccaacaag
     1201 gccgtccagg aagcctatct cggcacggtg cccgaatgac cgcgaccgcc gctcccgccc
     1261 gcgccgggca tccgcaagcc cccgcggcgg agcccatgct cgccgtcagc gacctgcacg
     1321 cctactacgg caagagccac atcctgcagg gcgtcgatct cacggtgcgc gagggcgaga
     1381 tcgtgagcct ccttggccgc aacggcgtcg ggcgctcgac caccatcaag accatcatgg
     1441 gccaggtgcc gccgcagggc tcggtgcgct tcaaggggcg cgagatcgcc ggcctcaagc
     1501 cgcacgagat cgcccacctc ggcctcggct acgtgcccga ggagcgcgcc atcttcccgg
     1561 cgctgacggt gcgccagaat ctgatcctcg gcgagaagag cgggcgcacg ggcgggcgct
     1621 ggtccatgca ggacatgttc acgctgtttc cgcgcctcga ggagcgggtc gacacgccgg
     1681 gcggcgtcct ctcgggcggc gagcagcaga tgctcaccat ctgccgcacc ctcatgggcg
     1741 atcccgatct catcatgatc gacgaaccca ccgaaggcct ctcgccccag atggtcgagc
     1801 gcgtcggcga gatgctcggc cagatcgccg cgcgcggcgt ctcgatcctc ctggtcgagc
     1861 agaagctcac catcgcgctg agggtcgcca cccgcctcta cgtcatgggg cacggccgca
     1921 tcgtcttcga gggcaccccg gacgagctga aaggccgcgc cgacgtgcgc aaggagtggc
     1981 tggaggttta gacgcctgca ggagggccac aaccttgcag ctcttaaccg tgcgacggag
     2041 gcggtgtaga gggcttctcc tcgtgcacgg atcggcccaa agcggatgaa gaactttcag
     2101 agcaatcgcg ggtttcggct caccccgacg gacgacacgc cgttccatcc gcggctgttc
     2161 ggccggcgcg gcgcggtcgc cgccgagcac tatctcgccg cgggcgccgg catcgacatc
     2221 atgaagcagg gcggcaacgc catcgatgcg gcggtcgcgg ccgtgctggt cgagggcgtc
     2281 gtcaatccgc agatgcacac gatcggcggc gagctgccca tcctcatcgc ggtgccgggc
     2341 tcgaccgaca tcgtgtgcat caacggcaac atggtggcgc cggagcgcgc cacgcccgag
     2401 gcgttcctgt ctcgcggttt ttccaagatc ccgggagacg gcatcttcgc cgccggcgtg
     2461 ccgggcgcca tgggcgcgct gctcacggcg ctgatgcgct tcggccgcct gcgcttcgcc
     2521 gacgtggtcg cgccggccct cgacctcgcc cgcgagggct ttccggtcca cgccgggctc
     2581 ctgcgccagc acggcttcgg catcgccgcc aacgcggcgc gcttccgcac cgaatggccc
     2641 ggcaccgcgg ccgtctacct ccccggcggg cgcatccccg aggaaggcga gatcatcgtc
     2701 aatccgaagc tcgcggacat gttcgactac ctcgccggcg aggagaagcg cgccggcggc
     2761 agccgcgaga ccggcatcca ggcggccttc gacggcttct acaagggcga cgtggcgcgc
     2821 gcgatcgtcg cctactcgga cgacaagggc gggctcctgc agcgctcgga cttcgagcgc
     2881 ttcgaggtgc cggtcgagcg cccggtgtcg ctcagcttcg agggcgtcga gctctacaag
     2941 tgtgggccct ggacccaagg gcccgccgtg ctgcagaccc tctcgatcct gaagaacttc
     3001 gacctgcgcg cgctcgggca caactccacc gcctacgttc acacggtggt cgaggccatg
     3061 aagctcgcct tcgccgaccg cgagcagttc tatgccgacc cgcgccacgt ggacgtgccg
     3121 gtcgagggcc tgctgagcga ggcctatggg cgcgctcgtg ccgcccttgt cggcgagcgc
     3181 gccgacggcg ccctgcgtcc gggcaacgcc tggaccggcg aggcgctgct tcccgcctcc
     3241 gagcggcttg gcggctcgtc ctggggtcca ggcaccgtgc acgtcgacgc catggatcgc
     3301 gagggcttca cggccgcctt caccccgagc ggagcctgga tcaagagcgc ggag
//
LOCUS       DASQWN010000413         2659 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_666450, whole genome shotgun sequence.
ACCESSION   DASQWN010000413 DASQWN010000000
VERSION     DASQWN010000413.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2659)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2659)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2659
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_666450"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..318
                     /locus_tag="VE686_07850"
     CDS             <1..318
                     /locus_tag="VE686_07850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019904922.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein meaA"
                     /protein_id="HYY84398.1"
                     /translation="ARETGAHVIGLSILSGSHVPLVREVMARLRLEGLDHVPVVVGGI
                     ISAEDDNVLRNMGVSGVYTPKDFSLDAIMGDLVTVVRRSLERRAQGSEVAPSRRARAS
                     AVV"
     gene            complement(365..1528)
                     /locus_tag="VE686_07855"
     CDS             complement(365..1528)
                     /locus_tag="VE686_07855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009491050.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class V-fold PLP-dependent
                     enzyme"
                     /protein_id="HYY84399.1"
                     /translation="MPATPPRWSKQSLAAQAMGHVDPTTKAVVAPIHVATTYLRDEDN
                     AYSSGFVYGRPDNATVREAEAVVAMLEEAAAGALLFGSGMAAATAVFQALDPGDHVVA
                     PAVMYWALRNWLMTEARRWGIDVELVETDDLDKLRSAVKPGRTKLVWIETPSNPLWTI
                     TDIAAAAEVAHAAGARLAVDSTAASPVHTRPLSLGADIVMHAATKILNGHSDVVAGVL
                     AGARADEFWQRLVGIRARQGGILGPFEAYLLMRGMRTLHLRAAAQAHSAFDLARRLSA
                     HPDVSRVLYPGLPQHPGHEVAARQMQDGFGFMLSVQVAGGERAAVATAAKVGLWKRAT
                     SLGGVESLIEHRASIEGPGTPCPPDLLRLSTGIESVEDLYADLDEALRRAHRS"
     gene            complement(1673..2239)
                     /locus_tag="VE686_07860"
     CDS             complement(1673..2239)
                     /locus_tag="VE686_07860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012255072.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CarD family transcriptional regulator"
                     /protein_id="HYY84400.1"
                     /translation="MTAKKTAQRQGFKTGEAIVYPAHGVGRITAIEEQEIAGFKLELF
                     VVSFEKDKMVLRVPTAKAASVGMRKLAEPTLVQKGLDVLTGRARIKRTMWSRRAQEYE
                     AKINSGDLIAVAEVVRDLYRSEAQPEQSYSERQLYEAALDRVVREISAVNKITDTEAL
                     KLIEQSLAKSPRRTKGTEEVEEVQEEAA"
BASE COUNT          399 a          887 c          941 g          432 t
ORIGIN      
        1 gcgcgcgaga ccggcgccca cgtgatcggc ctgtcgatcc tgtcgggttc ccacgtgccc
       61 ctcgtgcgcg aggtcatggc ccgcctgcgc ctcgagggcc tcgaccacgt ccccgtggtg
      121 gtcggcggca tcatctcggc cgaggacgac aatgtcttac gcaacatggg cgtctcgggc
      181 gtctacacgc cgaaggactt ttccctcgac gccatcatgg gcgacctcgt gacggtggtg
      241 aggcggtcgc tggagcggcg cgctcaaggt tcggaggttg cgccatcccg ccgggcgcgt
      301 gcgagcgccg tcgtgtagcg cacgtcatcc tcgggtcgac gctgcgcgtc gcccgaggat
      361 gacgctatga gcggtgtgcg cggcggagcg cctcgtcgag atcggcgtac aggtcctcaa
      421 cgctttcaat gcccgtcgac agccgcagca ggtccggcgg gcagggggtg ccggggcctt
      481 cgatggaggc gcggtgctcg atgaggctct cgacgccgcc aagcgaggtg gcgcgcttcc
      541 ataagccgac cttggcggcg gtcgcgacgg cggcgcgctc acccccggcg acctggaccg
      601 acagcatgaa gccgaacccg tcctgcatct gccgcgccgc gacctcgtgg ccggggtgct
      661 gcggcaggcc cgggtagagg acgcgggaga cgtccgggtg cgccgagagg cggcgcgcaa
      721 gatcgaaggc cgagtgcgcc tgggcggccg cgcggagatg cagggtccgc atgccgcgca
      781 tgagcaggta ggcctcgaac gggccgagga tgccgccctg ccgggcgcgg atgccgacga
      841 gacgctgcca aaactcgtcc gcccgcgctc ctgcgagcac gcccgcgacg acgtccgagt
      901 ggccgttgag gatcttggta gcggcgtgca tgacgatgtc ggccccgagc gacaggggac
      961 gcgtgtgcac cggcgaggcg gcggtcgagt cgacggcgag ccgtgcgccc gccgcatggg
     1021 cgacctcggc ggcggctgcg atgtcggtga tcgtccagag cgggttcgaa ggcgtctcga
     1081 tccacacgag cttggtccgg cccggcttca cggccgatcg cagcttgtcg aggtcgtccg
     1141 tctcgacgag ctcgacgtcg atgccccagc ggcgtgcctc ggtcatgagc cagttgcgca
     1201 aggcccagta catgacggcc ggcgcgacca cgtggtcgcc gggatcgagg gcctggaaca
     1261 cggccgtcgc cgccgccatc ccggaaccga acaggagcgc gcccgctgcc gcctcctcga
     1321 gcatggccac gaccgcctcg gcctcgcgga cggtggcatt gtcgggccgg ccatacacga
     1381 agccggacga ataggcgttg tcctcatccc gcagatacgt ggtggcgacg tggatcggcg
     1441 ccaccacggc cttcgtggtc gggtcgacgt ggcccatggc ctgtgccgca aggctctgtt
     1501 tcgaccagcg gggaggggtg gcgggcatgg gcaggctccg gcgaaggttc gcgcaacgaa
     1561 agcagagccg caggccgccg ggaagagcgc cggccgggca ggagccctgc gcaaagaaaa
     1621 agcccggccg gagccgggct tttcgtggaa cgacgggacg tgcggctcgc gcttacgcgg
     1681 cctcctcctg gacttcctcg acctcttcgg tgcccttcgt ccggcgcggg gacttggcca
     1741 ggctctgctc gatgagcttc agcgcctcgg tgtcggtgat cttgttcacc gccgagatct
     1801 cccgcaccac ccggtcgaga gccgcctcgt agagctggcg ctcgctgtag gactgctcgg
     1861 gctgggcctc ggagcggtac aggtcgcgga ccacctcggc cacggcgatg agatcgccgg
     1921 agttgatctt cgcctcgtac tcctgcgcgc ggcgcgacca catggtgcgc ttgatgcggg
     1981 cacggccggt cagcacgtcg agacccttct ggacgagggt cggctcggcg agcttgcgca
     2041 tgccgacgct ggcggccttg gcggtcggga cgcgcaggac catcttgtcc ttctcgaacg
     2101 acacgacaaa cagctcgagt ttgaagccgg cgatctcctg ttcctcgatg gcggtgatgc
     2161 ggccgacccc gtgggccggg tacacgatcg cctcgccggt cttgaaaccc tgacgctgag
     2221 ctgtcttttt ggcggtcata cgcgaagagc ctcctgtcac gatcctggcc ggatcacgcg
     2281 tctcctcagg gcagggttcc tggagagaca aaattttacg cgccggcgga cctaccaatc
     2341 cgccttcgtt ccctgtagag ccggttgcaa cgcacgcccg ctcccctcca aagacttggt
     2401 atcccgagtc gttggcgtgg aattcagttc atctgttgga ccgcttgcgg cggggttgga
     2461 tgcgtcgggc gcaggcgacg gcagacccgg aacctagcac gattccggcc caaaatcaaa
     2521 ggtttttcag gcaataagcc taaccgcgac ggcaaaggcc cgaaactggg gtcagtcgcc
     2581 ttcgccggga ttgggcgaga actgctcggc aaacttgttc ggcacgccgt cccagctctt
     2641 ggcgtccgcc ggcgcttcc
//
LOCUS       DASQWN010000414         2449 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1162090, whole genome shotgun sequence.
ACCESSION   DASQWN010000414 DASQWN010000000
VERSION     DASQWN010000414.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2449)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2449)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2449
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1162090"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1667
                     /locus_tag="VE686_07865"
     CDS             <1..1667
                     /locus_tag="VE686_07865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006615267.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF3369 domain-containing protein"
                     /protein_id="HYY84401.1"
                     /translation="IIDDDPAVHDGTRFALSDYALNGQGIEILSAYSAADGRELLRAH
                     PDTAVVLLDVVMEAESSGLELVDIIRNDLKNETVRIILRTGQPGQAPERRVIVDYDIN
                     DYKAKTELTADKLFTTLTAALRAHQQLKRMVETRRGLEIIIDAAAALFDFRSMQRLAE
                     GVLTQIASLLNVDCAGILVLRDEAWSEERFAVLAGSGCYSECVGDDAPETLDSGLRAL
                     VREAFRRQRHEFDAKRSVLYIHTASGREIVVLLETGRPLSDTDRALVEVFCSRLSVAF
                     DNVILYEQLQAANAHLEERVAQRTRELTRANARLGAQREQLRQSNKLKGEILGTVAHD
                     LKNPLGVILGRAEILSDLLEADPVQRDAAQAQVGHIRDSAKRLTGMVDLLISDAMNDA
                     LDITVRREPLDLAALAAEVVEANRPLAERKQQGIALQAPDALPAVGDQDRLRDAIDNL
                     VSNAIKYSPPGGAIEVGLRQEDARIRVSVRDYGPGLSPEDLSRLFGRFQRLSAKPTGG
                     ESSTGLGLSIAKRIVELHGGEIEAASGGPGTGTTFAIVLPSGETTR"
     gene            1664..2389
                     /locus_tag="VE686_07870"
     CDS             1664..2389
                     /locus_tag="VE686_07870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011083849.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HYY84402.1"
                     /translation="MTTQLPHVFVVDDEAAAREMVGDYLKMHGYRVTLCDGGASLRKC
                     LRQGDPDLIVLDLNMPEEDGLSIVRDLKSRSSVPVIMLTATASPIDRVVGLELGADDY
                     IAKPCELRELVARVRSVLRRSAAAASGAGGPPRTEPVRFGTKLLDFEARVLRDEDGIE
                     HPLTTSEFNLLKAFAEHPRRVMTRERLLDLANARDPDAFDRAIDVRITRIRKKVEPDP
                     NHPRIIKTVRGAGYVFSPEGQET"
BASE COUNT          403 a          900 c          804 g          342 t
ORIGIN      
        1 ccatcatcga cgacgacccc gccgtccacg acggcacgcg cttcgcgctc tcggactacg
       61 cgctcaacgg ccagggcatc gagatcctgt cggcctactc ggccgccgac ggacgggagc
      121 ttctgcgggc gcaccccgac acggccgtgg tgctgctcga cgtcgtgatg gaggcggaat
      181 cctcgggcct cgagctcgtc gatatcatcc gcaacgacct caagaacgag accgtgcgca
      241 tcatcctgcg cacgggacag cccgggcagg cgcccgagcg ccgcgtcatc gtcgactacg
      301 acatcaacga ctacaaggcg aagaccgagc tcacggccga caagctcttc accacgctga
      361 cggcggcgct gcgtgcgcac cagcagctca agcgcatggt cgagacgcgg cgcgggctcg
      421 agatcatcat cgacgccgcc gccgcgctgt tcgacttccg ctccatgcag cgcctcgccg
      481 aaggggtgct gacgcagatc gcgtccctgc tcaacgtcga ttgcgccggc atcctggtcc
      541 tgcgcgacga ggcgtggagc gaggagcgct tcgccgtcct cgccgggtcg ggctgctaca
      601 gcgagtgcgt gggagacgat gcacccgaga ccctcgacag cggcctgcgg gcgctcgtgc
      661 gcgaggcgtt ccggcggcag cggcacgagt tcgacgccaa gcgctcggtc ctctacatcc
      721 acaccgcgag cgggcgcgag atcgtggtcc tgctcgagac cgggcggcct ttgtcggata
      781 cggaccgcgc cctcgtcgag gtcttctgca gccgcctgtc cgtcgccttc gacaacgtca
      841 tcctctacga gcagctccag gccgccaacg cccacctcga ggagcgcgtg gcccaacgca
      901 cgcgcgagct cacccgcgcc aacgcccgac ttggcgcgca gcgcgagcag ctgcggcagt
      961 cgaacaagct caagggcgag atcctcggca ccgtcgcgca cgacctcaag aatccgctcg
     1021 gcgtcatcct cgggcgggcc gagatcctct ccgacctgct ggaggcggat ccggtgcaga
     1081 gggatgccgc ccaggcgcag gtcgggcata tccgcgattc ggcgaagcgc ctgaccggca
     1141 tggtcgatct gctcatctcc gacgccatga acgacgccct cgacatcacg gtccggcgcg
     1201 agcccctcga cctcgcggcg ctcgcggccg aggtggtgga ggcgaaccgc ccgcttgcgg
     1261 aacgcaagca gcagggcatc gcgctgcaag cacccgatgc gctcccggcc gtgggcgacc
     1321 aggaccgcct gcgcgatgcc atcgacaacc tcgtcagcaa cgccatcaag tacagcccgc
     1381 ccggcggcgc catcgaagtc ggccttcgcc aggaggacgc gcgcatccgc gtgtcggttc
     1441 gggactacgg cccggggctg tcgccggagg acctgtcgcg cctgttcggg cgcttccagc
     1501 gcctctccgc caagccgacc ggcggcgaga gctcgacggg cctcggcctg tccatcgcca
     1561 agcgcatcgt cgagctgcac ggcggcgaga tcgaggccgc gagcggcggc cccggaaccg
     1621 gaaccacctt cgcaatcgtg ctgccaagcg gggagacgac ccgatgacga cccaacttcc
     1681 ccacgtcttc gtcgtcgacg acgaagcggc tgcccgcgag atggtcggcg actatctcaa
     1741 gatgcacggc taccgggtga ccctgtgcga cggcggcgcg agcctgcgca aatgcctgcg
     1801 ccagggcgac ccggacctga tcgtgctcga cctcaacatg cccgaggagg acgggctgtc
     1861 gatcgtgcgc gacctcaaga gccgcagctc ggtgccggtg atcatgctga ccgcgacggc
     1921 gagcccgatc gaccgcgtcg tcgggctcga gctcggcgcc gacgactata tcgctaagcc
     1981 ctgcgagctc cgggagctcg tggcccgggt ccgctcggtc ctgcggcgca gcgccgccgc
     2041 ggcctccggg gccggcggcc ctccgcgcac ggagccggtg cgcttcggga cgaaattgct
     2101 cgacttcgaa gcccgcgtgc tgcgggacga ggacggcatc gagcaccccc tcaccacctc
     2161 ggagttcaat ctcctcaagg ccttcgcgga gcatccccgg cgtgtgatga cgcgcgagcg
     2221 gctgctcgac ctcgccaacg cccgcgaccc cgacgccttc gaccgcgcca tcgatgtgcg
     2281 catcacgcgc atccgcaaga aggtggagcc cgatccgaac cacccgcgca tcatcaagac
     2341 ggttcggggc gccggctacg tcttctcgcc cgagggccag gagacctgat aaccgccttt
     2401 gtttcgtgtg gcgggccgct cacgaaacaa agcggggtat tcggaaacc
//
LOCUS       DASQWN010000415         2747 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1162489, whole genome shotgun sequence.
ACCESSION   DASQWN010000415 DASQWN010000000
VERSION     DASQWN010000415.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2747)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2747)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2747
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1162489"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(174..749)
                     /locus_tag="VE686_07875"
     CDS             complement(174..749)
                     /locus_tag="VE686_07875"
                     /EC_number="3.2.2.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010914427.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008725 - DNA-3-methyladenine glycosylase
                     activity [Evidence IEA];
                     GO_process: GO:0006284 - base-excision repair [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-3-methyladenine glycosylase I"
                     /protein_id="HYY84403.1"
                     /translation="MSDGLAEGPDGRLRCWWGASTPDYLAYHDEEWGKPVRDDRGLYE
                     RLCLEAFQSGLSWLTILRKREGFRAAFAGFEPQRVAAFGDEDVARLMADAAIVRNRAK
                     IDAAIANAKVVAAMERDGESLAELLWSFSPGERPAPRSLAEVPAVTPESKAMAKELKR
                     RGFRFVGPTTAYALMQACGIVNDHIDGCLAR"
     gene            816..1805
                     /locus_tag="VE686_07880"
     CDS             816..1805
                     /locus_tag="VE686_07880"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY84404.1"
                     /translation="MRRPLLAVLAASACLLAIAPAASASDPLLPPRGKVFSGLSGGLS
                     IDLFQRQTGNHPAVFGFFTKFYGSNEFIFRNAEQAGSRLMLHISTQDGYGTREVVTPR
                     GIARGEGDRYLVNLNRRIAEYGQPTYIRLLAEMNQANNGYAAFDASGRSRGPAHTTAQ
                     FKQAWRRSTLILRGGPVEAIDAKLRALGLPPVQTNADELPQPAIAMLWVPQTRGTPDI
                     PANMPRAYWPGGAYVDWVGTDFYSRFPNFHWLEDFYRDFGGKPFVFGEWALWGGDDAG
                     FVQRLFAWIGSHPRVRMVLYNQGKLTDGPFRLNRYPRAKAALRKALSHRRFSL"
     gene            1829..2287
                     /locus_tag="VE686_07885"
     CDS             1829..2287
                     /locus_tag="VE686_07885"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY84405.1"
                     /translation="MHPDKLSRSEWIAVLGGLLLLVGIFLPWYVPNTENRNAIVAGSR
                     EAVSAWEAHTLLRFLFLAAAVAPLILAYIIMRDHELSWPRGEMTAVVAIAAFGIIGYL
                     GVVDRPGDPPGEIGLGIGWFLSMAGVILMAVGGAMRAGSSERPRKPPGVL"
     gene            2288..>2747
                     /locus_tag="VE686_07890"
     CDS             2288..>2747
                     /locus_tag="VE686_07890"
                     /EC_number="3.1.3.11"
                     /inference="COORDINATES: protein motif:HMM:NF015290.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042132 - fructose 1,6-bisphosphate
                     1-phosphatase activity [Evidence IEA];
                     GO_process: GO:0006071 - glycerol metabolic process
                     [Evidence IEA];
                     GO_process: GO:0006094 - gluconeogenesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="fructose-bisphosphatase class II"
                     /protein_id="HYY84406.1"
                     /translation="MSHSQPPPDRNLALELVRVTEAAALQAARWVGRGDKEAADQAAV
                     DGMHAVLHTVHMDGVVVIGEGEKDEAPMLHNGEQVGDGSPPEVDIAVDPLEGTRLAAE
                     GRPSALAVIALSPRGTMFDPGPCVYMEKMAGGEHLADLLDLDRPLRETVEL"
BASE COUNT          367 a         1049 c          953 g          378 t
ORIGIN      
        1 ggcctcgccg agcgcgcggg tgctcccgga gagctgcgcg cgcccgtcga ccgtggagac
       61 catgttcacc aacacgaacg ggcggccctc gggcgcgcgc tcgcgcgggc gcacctcggc
      121 cagcagctcg gccgcggtcg cctcctcgcc cgcggacagc aggcgcgagt aggtcacctc
      181 gccaagcacc cgtcgatgtg gtcgttgacg atcccgcagg cctgcatcag cgcgtaggcg
      241 gtggtcgggc cgacgaagcg gaagccgcgg cgcttgagct ccttggccat cgccttggac
      301 tcgggcgtga cggccggcac ctcggcgagc gagcgcggtg cggggcgctc cccgggggag
      361 aacgaccaca gcagttcggc cagcgactcg ccgtcgcgct ccatcgccgc gacgaccttc
      421 gcgttggcga tcgccgcgtc gatcttcgcc cggttgcgca cgatcgccgc gtcggccatc
      481 agccgcgcga cgtcctcgtc cccgaacgcg gccacccgct gcggctcgaa gcccgcgaac
      541 gcggcccgga acccctcgcg cttgcgcagg atcgtcagcc acgacagccc ggactggaac
      601 gcctccaggc acagccgctc gtagagcccg cggtcgtcgc gcaccggctt gccccactcc
      661 tcgtcgtggt aggcgaggta gtcgggcgtg ctcgcgcccc accagcagcg cagccgcccg
      721 tcggggccct cggcgagtcc gtcgctcatg gcggccgagg ctacctggcc ggaagaccgt
      781 tgtcgggcgc gggccgagct gccgatgatc ggaccatgcg ccgtcccctg ctcgccgtgc
      841 tcgccgcgtc cgcgtgcctg ctcgcgatcg ccccggccgc ctccgcgtcc gacccgctgc
      901 tgccgccgcg cggcaaggtc ttcagcgggc tcagcggcgg gctctcgatc gacctcttcc
      961 agcgccagac cggcaaccac cccgccgtgt tcggcttctt cacgaagttc tacggctcca
     1021 acgagttcat cttccgcaac gccgaacaag cgggctcgcg cctgatgctg cacatctcca
     1081 cgcaggacgg ctacgggacg cgcgaggtgg tgaccccgcg cgggatcgcg cgcggcgagg
     1141 gcgaccgcta cctggtcaac ctcaaccgcc ggatcgccga gtacgggcag ccgacctaca
     1201 tccgcctgct ggccgagatg aaccaggcca acaacggcta cgccgccttc gacgcgagcg
     1261 ggcgctcgcg cgggccggcg cacacgacgg cgcagttcaa gcaggcctgg cgccgctcca
     1321 cgctgatcct gcgcggcggg ccggtcgagg cgatcgacgc gaagctgcgc gcgctcgggc
     1381 tgccgcccgt gcagacgaac gcggacgagc tcccgcagcc ggcgatcgcg atgttgtggg
     1441 tgccgcagac gcgcgggacg cccgacatcc cggccaacat gccgcgcgcc tactggcccg
     1501 gcggcgccta cgtcgactgg gtcgggaccg acttctacag ccgcttcccg aacttccact
     1561 ggctcgagga cttctaccgc gacttcggcg gcaagccgtt cgtgttcggc gagtgggcgc
     1621 tgtggggcgg cgacgacgcc ggcttcgtgc agcggctgtt cgcctggatc ggcagccatc
     1681 cgcgcgtgcg gatggtgctc tacaaccagg gcaagctcac cgacgggccg ttccggctca
     1741 accgctatcc gcgcgccaag gccgccctgc gcaaggcgct ctcgcaccgc cgcttctcgc
     1801 tctagccccc tgtagggtgc ggctccgcat gcacccggac aagctctccc gcagcgagtg
     1861 gatcgccgtc ctcggcggcc tcctgctcct cgtggggatc ttcctgccgt ggtacgtgcc
     1921 caacacggaa aaccgcaacg cgatcgtcgc cggcagccgt gaggcggtca gcgcgtggga
     1981 ggcccacacg ctgctgcgct tcctgttcct cgccgccgcc gtcgcgcccc tgatcctcgc
     2041 ctacatcatc atgcgcgacc acgagctctc gtggccgcgc ggggagatga ccgccgtggt
     2101 ggcgatcgcc gccttcggca tcatcggcta cctcggcgtg gtggaccgcc cgggcgaccc
     2161 gcccggcgag atcggcctcg gcatcggctg gttcctctcg atggccggcg tgatcctgat
     2221 ggcggtgggc ggcgcgatgc gcgcgggcag ctccgagcgg ccgcgcaaac ccccgggggt
     2281 gctctagatg tctcacagcc agccgccgcc cgaccgcaac ctcgcgctcg agctcgtccg
     2341 cgtcaccgag gccgccgcgc tgcaggccgc gcggtgggtc ggccgcggcg acaaggaggc
     2401 cgccgaccag gccgccgtcg acggcatgca cgccgtgctg cacaccgtgc acatggacgg
     2461 ggtcgtggtg atcggcgagg gcgagaagga cgaggccccg atgctgcaca acggcgagca
     2521 ggtcggcgac gggtcgccgc cggaggtcga catcgcggtc gacccgctcg agggcacccg
     2581 cttggccgcc gaggggcgcc cgagcgcgct ggcggtcatc gcgctgagcc cgcgcgggac
     2641 catgttcgac cccggcccct gcgtctacat ggagaagatg gccggcggcg agcacctcgc
     2701 cgacctcctc gacctcgatc ggccgctgcg cgagacggtc gagctcg
//
LOCUS       DASQWN010000416         2146 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_767503, whole genome shotgun sequence.
ACCESSION   DASQWN010000416 DASQWN010000000
VERSION     DASQWN010000416.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2146)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2146)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2146
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_767503"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(1..756)
                     /locus_tag="VE686_07895"
                     /pseudo
     CDS             complement(1..756)
                     /locus_tag="VE686_07895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003599313.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology.
                     GO_process: GO:0006415 - translational termination
                     [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="PCRF domain-containing protein"
     gene            complement(862..>2146)
                     /locus_tag="VE686_07900"
     CDS             complement(862..>2146)
                     /locus_tag="VE686_07900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009490936.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008658 - penicillin binding [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="penicillin-binding transpeptidase
                     domain-containing protein"
                     /protein_id="HYY84407.1"
                     /translation="ERELGIVTAEGARITRKGVNGLSSGDVIYVEPTDKQGQYRVRQI
                     PEISGAIVAMDPYTGRVHAMVGGFSYDQSEFNRATQAQRQPGSSFKPFVYATALDNGY
                     TPSSIVVDAPITIDMGPGQESWTPSNYDGKPTGPHTLRYGIEQSKNLMTVRLAKDVGM
                     PLVAEYARRFGIYDDMLPVLSMALGAGETTVMRMVTAYSMIANGGRRIKPTLIDRIQD
                     RTGQTIYKHDERECPACAAEKWAGQDEPKLIDKREQVLDPLTAYQITSILEGAVQRGT
                     GTALKAVGKPIAGKTGTTNDAKDVWFVGFSPDLAVGVYLGYDKPQSLGDRATGGGFAA
                     PIVRDFLQVALKDKPATPFRVPPGIKLIRVSHGSGMRAGGGEGGNVILEAFKPGTAPP
                     ESYSVMGYEGGEQVQIPTFGGGGGRPVAVGGGGLY"
BASE COUNT          292 a          730 c          740 g          384 t
ORIGIN      
        1 acgtgctggc cgcccgcgcc cgaggagcgg aacgtgtcga tccggcagtc ggattccttg
       61 atctcgatgt tgatgcggtc gtccaccacc ggatagaccc acacggatgc gaagctcgtg
      121 tggcggcggg cgttggagtc gtagggcgag atccgcacga gacggtgcac gccggactcg
      181 gtcttgagcc agccataggc gttgtggccc ttgatctgga gcgtcgcgct cttgatgccg
      241 gcctcctcgc cgtcggtgac ctcgagaagc tcgaccttgt acttccggcg ctcggcccag
      301 cgggcgtaca tgcgctgcag catgttggcc cagtcctggc tttcggtgcc gccggcgccc
      361 gaatggactt cgaggtaggt gtcgttgccg tccgcctcgc cggagaggag cgtctcgacc
      421 tgccgccggg cggcttcggc ctgcagggcg cggatcgccg cctcgccctc ggaaacagac
      481 gcctcatcgc cctcggcgtc gccgagctcg atcagcgtca cggcatcgtc gagatcgccc
      541 tccatcttct tgatggcggc aacctgctcc tcgagcgcat tgcgctcgcg catgaccttc
      601 tgtgcggcct cggcgtcgtt ccagaggtcc gggtcctcgg cctgggcgtt cagctcggcg
      661 aggcgcttct gggcgcgatc ccagtcaaag atgcctcctc agcagtccga tcgactgctt
      721 ggcggcgtca acgagcgatt cgatctcggc gcgcatctgg agtgggttct gaacggaggg
      781 ggcgggagcg gcgtcttacg ggccggcgcc cgcggtgtcc acacccgcgc ggcgctcctg
      841 aacggctgag cggcccgacg cctagtagag cccgccgccg cccaccgcca cggggcggcc
      901 gccaccacca ccgaacgtcg gaatctggac ctgctcgccg ccctcgtagc ccatgaccga
      961 gtagctttcg ggcggcgcag tgccgggctt gaaggcctcg aggatgacgt tgccgccctc
     1021 cccgcctccg gcgcgcatcc cgctgccgtg gctgacccgg atcagcttga tgccgggcgg
     1081 cacccgaaac ggcgtcgccg gcttgtcctt gagggccacc tgcaggaagt cgcgcacgat
     1141 cggcgccgcg aaaccgccgc ccgtggcgcg gtcgcccagc gactgcggct tgtcgtagcc
     1201 gaggtagacc ccgaccgcga ggtcgggcga gaaaccgaca aaccacacgt ccttggcgtc
     1261 gttcgtggtc ccggtcttgc ccgcgatggg cttgccgacg gccttgagcg cggttccggt
     1321 gccccgctgc accgcaccct cgaggatcga ggtgatctgg tacgcggtca gaggatcgag
     1381 cacctgctcg cgcttgtcga tgagcttggg ctcgtcctgg ccggcccact tttcggccgc
     1441 gcacgcgggg cactcgcgct cgtcgtgctt gtagatcgtc tgcccggtgc ggtcctggat
     1501 gcggtcgatc agcgtcggct tgatgcgccg gccgccgttg gcgatcatcg agtaggccgt
     1561 gaccatgcgc atgaccgtcg tctcgccggc gccgagcgcc atggagagca ccggcaacat
     1621 gtcgtcatag atgccgaacc ggcgggcgta ctcggcgacg agcggcatgc cgacgtcctt
     1681 ggcaagccgc acggtcatga ggttcttgga ctgctcgatg ccgtaacgga gcgtgtgcgg
     1741 gccggtcggc ttgccgtcgt agttcgacgg cgtccatgac tcctggcccg gtcccatgtc
     1801 gatggtgatc ggcgcgtcga cgacgatcga cgacggcgtg tagccgttgt cgagggcggt
     1861 cgcgtagacg aacggcttga acgacgaccc gggctgccgc tgcgcctgcg tagcgcggtt
     1921 gaactcgctc tggtcgtagg agaagccccc gaccatggcg tgcacgcggc ccgtataggg
     1981 gtccatggcc acgatggcgc ccgagatctc cgggatctga cggactctgt actggccctg
     2041 cttgtcggtc ggctcgacgt agatcacgtc gccactcgag aggccgttca cgcctttgcg
     2101 ggtgatgcgc gcaccttcgg ccgtgacgat gccgagctcg cgctcg
//
LOCUS       DASQWN010000417         3020 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_73257, whole genome shotgun sequence.
ACCESSION   DASQWN010000417 DASQWN010000000
VERSION     DASQWN010000417.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 3020)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3020)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3020
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_73257"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(353..1564)
                     /locus_tag="VE686_07905"
     CDS             complement(353..1564)
                     /locus_tag="VE686_07905"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF024871.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HYY84408.1"
                     /translation="METFTALAGPAGVLAAPRAGPAFRLDVVSDVRALEDIWRELETA
                     GVASPYQRFDWVTTYVASHREMAGFEAWFVVVRDRAAEPLVLLPLEIRRSAAGRIADV
                     VGGKHANFHAPLLRAGAAREIGPAEMRAVLMDAGRQIGLDAYAFTNLPVAWRGEPNPL
                     AIGGRPSPSNGYKLTLAGDAETTLGRAFSKDTRKKLRRKEKALAEIGPVAHRVARSPS
                     EADAMLDTFLDLKRARFRELGIANPFEEPETERFLRAASRAGLARGAPALELHALVVG
                     ERLVAIFGAATDATRCSGMMIAFDPEPAVARTSPGDLLLTHVVRAQCLAGRETFDLGV
                     GEARYKNSLCDETEELVDVALPVTWRGRLHAAAAGAYGSAKHRVKQTPWMWGAVAAAR
                     RLKARAGAGSG"
     gene            complement(1729..2898)
                     /locus_tag="VE686_07910"
     CDS             complement(1729..2898)
                     /locus_tag="VE686_07910"
                     /inference="COORDINATES: protein motif:HMM:NF025082.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HYY84409.1"
                     /translation="MSLSRVDSRRIFKRAGACSAFMVVRDEALRLPYVLEYHRTLGVG
                     RFYVVDNGSTDGTLELVLDQPDCHVFRTDDAFGAADFGMDWVNALVEEYGTGSWCLFI
                     DADELLVYPHSETVRLPEFCAFLDRVGAEGVWAMMLDMYNHGPLREARYEAGWPFLAT
                     CPHFDPDYVSRLSLGHRRDEIVGGPRLRVFYPEVADAGPLSIAVRRGLRWLRMRRAGE
                     FLGLAHTRIGAGLPPDLRKVPLIKARSGLRWTSNHSTTPLAVAPVSAVLLHFKFFADF
                     HERVVREAARGEHWDSAAEYARYADLIASHPDASLFTSRSETFRSSAQLVDLGLMRSV
                     PEWDELACRRNQPLGERQAISDVAPVTEHRCADFEPGLVPVPTGYPRTGRAQHVD"
BASE COUNT          476 a         1019 c         1069 g          456 t
ORIGIN      
        1 accctgagcg cggcgctttc cgccgggatc gtgactgcgt acggcggggc gtggccggag
       61 gcgcggcgcg gcgcgaaggc attctacgac aggctgcctc aggccagcgg agcgggggag
      121 gccggcatcg tgcgcctcct cgcgccttcg aacccgcggg cgtgagcggc tccatgcgca
      181 aggtctatga gaccgccgtc ctcggcgcgg ccgcctgctt cggcctcggc gcggccttcg
      241 tcatcaatcc gctgctgccg ttctgaggac ctgcgatgat cctcttgtta tctttcgcga
      301 cgcttgccgc tctcgtgacc gcgacggcgc tcgccgacta ggcaggccga gcttagccgc
      361 tgccggcgcc ggcgcgggcc ttgagacggc gggccgccgc gacggcgccc cacatccagg
      421 gtgtctgctt gacgcgatgc ttcgcgcttc cgtaggcccc tgctgccgca gcgtggaggc
      481 gcccgcgcca ggtcaccggc agggccacgt cgacgagctc ttctgtctcg tcgcagagcg
      541 agttcttgta gcgtgcctcg ccgacgccga ggtcgaaggt ctcgcgaccg gcaaggcact
      601 gggcgcgcac cacgtgcgtg agcagcaggt cgccggggct ggtgcgggcg accgcaggct
      661 cgggatcgaa ggcgatcatc atgcccgagc agcgagtcgc gtccgtcgcc gccccgaaaa
      721 tagcgaccaa tcgctcgccg acgacaagcg cgtgcagctc gagggccggc gcgccgcggg
      781 cgaggccggc gcgactcgcg gcgcggagga accgttccgt ctcgggctcc tcgaaggggt
      841 ttgcgatccc gagttcccgg aaacgagcgc gcttcagatc caggaaggtg tcgagcatgg
      901 cgtcggcctc gctgggcgag cgcgcaaccc ggtgcgccac cggcccgatc tccgctaggg
      961 ccttctcctt gcggcgcagc ttcttgcgcg tgtccttgct gaaggcccgc ccgagcgtgg
     1021 tttccgcgtc gccggcgagg gtaagcttat agccgttcga ggggcttgga cgcccgccga
     1081 tggcgagcgg gttcggctct ccacgccagg cgaccggcag gttggtgaag gcgtaagcgt
     1141 cgaggccgat ctgccggccc gcgtccatca gcacggcccg catctcggcc gggccgatct
     1201 cgcgggcggc gcctgcccgc aggagcggcg cgtggaagtt ggcgtgcttg ccgcccacca
     1261 cgtcggcgat gcggccggcc gcgctgcgcc ggatctcgag cggaagcagg acaagcggct
     1321 ccgctgcccg gtcgcggacg acgacgaacc aggcctcgaa gcccgccatc tcgcgatgcg
     1381 aggcgacgta ggtcgtcacc caatcgaagc gctgataggg cgaagcgacc ccggccgtct
     1441 cgagttcgcg ccagatgtcc tccaatgcgc ggacgtcgga gacaacatcg aggcggaagg
     1501 cggggccggc gcggggggcg gcgagaacgc cggcggggcc ggccagggcg gtgaaggtct
     1561 ccatgccctc ccgtaacaaa ggttccttaa gtcccggcta aagcgaaaga atgcggctca
     1621 agaaccggcc tcctcggctg acgaagggcc aatcgcagca ccttgccctc caccatcaag
     1681 cgcgctgcaa gcgcccgccc gcctacagat gcgggctagt tcgcgcggct aatcgacatg
     1741 ctgtgccctc ccggtgcgag gataaccggt gggcacggga acgaggccgg gttcgaagtc
     1801 agcgcaccga tgctccgtga ccggcgcaac gtcgctgatt gcctgacgct cgccgagggg
     1861 ctggttccgt cggcaggcaa gctcgtccca ctcagggacg ctacgcatta gcccgaggtc
     1921 gacgagctgc gcggacgacc ggaacgtctc acttcgggag gtgaacaagc ttgcgtccgg
     1981 gtggctggca atcaggtcgg cgtagcgggc gtattcggcg gcgctgtccc agtgctcgcc
     2041 tcgggccgct tccctgacga cacgttcgtg gaaatcggcg aagaacttga agtggaggag
     2101 cacggcactg accggtgcga cggccagcgg ggtcgtcgag tggttcgagg tccagcgcag
     2161 gccagagcgc gccttgatca gtgggacctt gcgaaggtcc ggggggaggc cggcgccgat
     2221 ccgggtgtgc gcaaggccga ggaactcgcc ggccctgcgc atccgaagcc acctgagccc
     2281 gcggcggacc gcaatgctga gcggccccgc atcggcgact tcgggataga acacccgcag
     2341 cctcgggccc ccgacgatct cgtctcgcct atgcccgagg ctcaggcgac tgacgtagtc
     2401 cggatcgaag tggggacagg tggctaggaa aggccagccg gcttcgtagc gggcctcgcg
     2461 cagcggccca tggttgtaca tgtcgagcat catcgcccag acgccctcgg cgcctacccg
     2521 gtcgaggaat gcacagaact ccggcagacg gacggtctcg ctgtgcgggt agacgaggag
     2581 ctcgtcggcg tcgatgaaga ggcaccaaga gccggtcccg tattcctcga cgagggcatt
     2641 cacccaatcc atgccaaagt ctgcggcgcc gaaggcgtcg tcggttcgga acacgtggca
     2701 gtccggctgg tctagaacca gctccaaggt gccgtccgtc gagccgttat cgacgacgta
     2761 gaagcgcccg accccaaggg ttctgtggta ttccagaacg tagggcaatc tcagcgcctc
     2821 gtcccgcacg accatgaagg cgctgcaagc gcccgctcgc ttgaagatgc gacgcgagtc
     2881 tacgcggcta agcgacatgc cgcgccgtcc tcatagggcg acgccgcggc ggcgcgggag
     2941 ccgggtcggg ttccctgcgc aagaactctg cggccgcctc gccgcctcgt gctgcaaccg
     3001 cttgagcttc atctcggctg
//
LOCUS       DASQWN010000418         2204 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_73379, whole genome shotgun sequence.
ACCESSION   DASQWN010000418 DASQWN010000000
VERSION     DASQWN010000418.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2204)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2204)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2204
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_73379"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..300)
                     /locus_tag="VE686_07915"
     CDS             complement(<1..300)
                     /locus_tag="VE686_07915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018648452.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tripartite tricarboxylate transporter
                     substrate-binding protein"
                     /protein_id="HYY84410.1"
                     /translation="MNRRHVIKGLASSAALAPFIARAAWAQAPWPSRNITMIVPFPPG
                     GQADLAARPIAAALEKTVGQAVVVENRGGAGGAIGNAAVARAAPDGHTLLMTLSSL"
     gene            complement(342..1205)
                     /locus_tag="VE686_07920"
     CDS             complement(342..1205)
                     /locus_tag="VE686_07920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013896892.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="fumarylacetoacetate hydrolase family protein"
                     /protein_id="HYY84411.1"
                     /translation="MKLACFESGGTVRVGIVDEAAQTVRPLGPEIRDIVDIVERYDEL
                     KGRLRGGDPLPLAGVKLRAPIPAPRRNIICVGKNYREHAREFAQSGFEAGAVKGAEID
                     EFPAVFTKPASSVIGPGDTVDLHPQATSMVDYEAELAVVIGRKGKNIPKERSYDHVFG
                     YTIINDVTARDRQRNHKQWFLGKALDTFCPMGPWVATADEVEPENLEVKCWVNGELRQ
                     DANTRDLIFDIPTLIATISQGMTLVPGDIISTGTPAGVGIGMKPPTFLKSGDVVEITI
                     TGLGKLSNPFV"
     gene            complement(1268..>2204)
                     /locus_tag="VE686_07925"
     CDS             complement(1268..>2204)
                     /locus_tag="VE686_07925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012330314.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="D-2-hydroxyacid dehydrogenase family protein"
                     /protein_id="HYY84412.1"
                     /translation="DYQRVAATLGDWDRLGPDVAIEVFDRNLASVDEAAAALAPYEVV
                     CLMRERMPMPRALIERLPNLKLIVVTGARTRSIDFEAAAERGIPVCHTRGGESHHATP
                     ELAWGLILSCARAIPQEHARVRAGAWQETIGTVLHGKTIGLLGLGKLGQRMVPVARAF
                     GMEVIAWSQNLTPERAREGGAEYVDKEALFSRADVVSIHLVLGERTRGIVGGPELSRM
                     KAGAILINTSRGPLVDQTALLEALEAGRIRAGLDVFDVEPLPENDPLRGAPNLVTTPH
                     LGYVTEGTYQAFFEDMVEDIVAWRAGAPVRLLGPA"
BASE COUNT          321 a          743 c          789 g          351 t
ORIGIN      
        1 gagcgacgac agggtcatca ggagcgtgtg accgtctggc gccgcgcgcg ccacggccgc
       61 gttgccgatg gccccgccgg cgccacctct gttctcgacg acgacggctt ggccgacggt
      121 cttttccaaa gcggcggcga tcggtcgagc cgcgagatcc gcctgtccgc cgggcggaaa
      181 cggcacgatc atggtgatgt tccgcgacgg ccagggcgcc tgggcccatg cggcccgggc
      241 aatgaacgga gcgagtgccg ccgaagaggc aaggcccttg atcacgtggc gacggttcaa
      301 ggcggtcctc cctgtctgtg tggcacggtc gtcatccaag gtcagacgaa cgggttcgag
      361 agcttgccga ggccggtgat cgttatctcc acgacgtcgc cggacttcag gaacgtcggc
      421 ggcttcatgc cgatgccgac gcccgccggc gtgccggtcg agatgatgtc gccgggcacc
      481 agcgtcatgc cctgcgagat ggtggcgatc agggtcggga tgtcgaagat gagatcgcgg
      541 gtgttggcgt cctggcgcag ctcgccgttg acccagcact tcacctcgag gttctcgggc
      601 tcgacctcgt cggcggtcgc gacccacggg cccatggggc agaaggtgtc gagcgccttg
      661 ccgaggaacc attgcttgtg gttgcgctgc cggtcgcgcg ccgtcacgtc gttgatgatc
      721 gtgtagccga agacgtgatc gtaggagcgc tccttgggga tgttcttccc cttgcgtccg
      781 atgacgacgg cgagctcggc ctcgtagtcg accatgctgg tcgcctgcgg gtgcaggtcg
      841 accgtgtcgc ccggcccgat gacggagctt gcgggcttgg tgaacactgc cgggaactcg
      901 tcgatctcgg cgcccttcac ggcgccggcc tcgaagccgc tctgcgcgaa ctcgcgcgca
      961 tgctcgcggt agttcttgcc gacgcagatg atgttgcgcc gcggagcagg gatcggcgcg
     1021 cgcagcttca cgccggcgag gggcaagggg tcgccgccgc gcaggcgtcc cttgagctcg
     1081 tcatagcgct cgacgatatc gacgatgtcc cggatttcgg gcccgagcgg cctcactgtc
     1141 tgcgccgctt cgtcgacgat gccgacccgg accgtcccgc cggactcgaa acacgcaagc
     1201 ttcatcgtgc tacctcttag ctgtcgatca tcggaacggg ccgagggggt gtcaacctga
     1261 acgggcgtca cgccgggccg aggaggcgga ccggggcgcc ggcgcgccag gcgacgatgt
     1321 cctcgaccat gtcctcgaag aaggcctggt aggtgccctc ggtgacgtag cccaggtgcg
     1381 gcgtcgtcac gaggttcggc gccccccgaa gcgggtcatt ctcgggcaac ggttcgacgt
     1441 cgaagacgtc aagcccggcg cggatgcggc ccgcctccag cgcctcgagg agcgccgtct
     1501 ggtcgacgag cggcccgcgc gaggtgttga tgaggatcgc gccggccttc atgcgcgaca
     1561 gctcaggccc gccgacgatg ccgcgcgtgc gctcgccgag gacgaggtgg atcgacacaa
     1621 cgtcggcgcg ggagaagaga gcctccttgt cgacgtactc ggcacctccc tcacgggcgc
     1681 gctcgggcgt gaggttctgg ctccaggcga tcacctccat gccgaaggcc ctcgccaccg
     1741 ggaccatgcg ctgcccgagc ttgccgaggc cgaggagccc gatcgtcttg ccgtggagca
     1801 cggtgccaat ggtctcctgc cacgccccgg cgcgcacgcg cgcgtgctcc tgcgggatgg
     1861 cgcgcgcgca ggacaggatc agcccccacg cgagctccgg ggtggcatga tgcgactccc
     1921 cgccccgcgt gtggcacacc gggatgccgc gctccgccgc cgcctcgaag tcgatcgagc
     1981 gggtgcgcgc gccggtgacg acgatgagct tcaggttcgg caagcgctcg atgagggcgc
     2041 gcggcatcgg catgcgctcg cgcatcaggc agacgacctc gtacggcgcg agcgccgcgg
     2101 ccgcctcgtc gacgctggcg aggttgcggt cgaacacctc gatggcgacg tccggcccga
     2161 ggcggtccca atcgccgagc gtcgccgcaa cgcgctggta gtcg
//
LOCUS       DASQWN010000419         2893 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1064847, whole genome shotgun sequence.
ACCESSION   DASQWN010000419 DASQWN010000000
VERSION     DASQWN010000419.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2893)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2893)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2893
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1064847"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..503)
                     /locus_tag="VE686_07930"
     CDS             complement(<1..503)
                     /locus_tag="VE686_07930"
                     /inference="COORDINATES: protein motif:HMM:NF013358.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetate uptake transporter"
                     /protein_id="HYY84413.1"
                     /translation="MEASSVPTRGPAGDGQADPTAGTAERHDVSFVPTPIADPGPLGL
                     AAFALTTFVLSMFNAGLVSDKGEPVVFALALTYGGIAQFVAGLWEFRTGNTFGAVAFC
                     SYGAFWLSFWAIEQFYAAKIPEADAGHAVGLYLIAWGIFTAYMFIASLRTTMAVAAVF
                     ALLTITY"
     gene            730..1185
                     /locus_tag="VE686_07935"
     CDS             730..1185
                     /locus_tag="VE686_07935"
                     /inference="COORDINATES: protein motif:HMM:NF016244.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF485 domain-containing protein"
                     /protein_id="HYY84414.1"
                     /translation="MAESTAPRGNEADAARADTSADSSIDWQSIEREPEFQELVHARR
                     SFVIPGTIFFLSWYMGFIILTAVAPDFMGERVYQGLTVGYVLALSQFVMVLVLGLMYL
                     RKADRVFDPLAERVIARYGEDGLRPQDAATHEERASRTAGTTSPRETVR"
     gene            1182..2822
                     /locus_tag="VE686_07940"
     CDS             1182..2822
                     /locus_tag="VE686_07940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003599394.1"
                     /note="Members of the Solute:Sodium Symporter (SSS), TC
                     2.A.21 as described in tcdb.org, catalyze solute:Na+
                     symport. Known solutes for members of the family include
                     sugars, amino acids, nucleosides, inositols, vitamins,
                     urea or anions, depending on the system; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0015370 - solute:sodium symporter activity
                     [Evidence IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sodium/solute symporter"
                     /protein_id="HYY84415.1"
                     /translation="MTVIAAVNTTAVVIFAIVLSITLGITYWASQRVSGAETFYAAGR
                     QITGSQNGLAISGDYLSAASFLGIAGLIYLYGFDGFLYSIGFLVAFLTVMFLLAERMR
                     NAGKYTIADVLAFRLNEKPARVAAATGTLSVAAFYLIAQMVGAGVLIEKLVGINFSLS
                     VLITGTFMLCYVVFGGMLATTWVQIIKAVLLMTGIVVMSLFVLERVGFNPIELFNRAE
                     ANVGKETTFSLAPGTFLKNDIDKISLGLALVLGTAGLPHILMRFFTVPNAKAARSSVV
                     WAMFLIGFFYLLTTCIGFGARALLGEGGVEAAGKGGNLAAPNLAQELGGGDGTFGGDL
                     FLAVIAGVAFATILAVVAGLVLSASSAVAHDIWSSVIRKHHDSEREEVVVAKIAAVGI
                     GIIAMVIAIVGGEALNVSFMVGLAFAIAASANFPALLLALSWPRFNTTGAVTGVLAGV
                     GSALVLIIISPIVWGGPPGEPDTGAFTWYDLNNPGIISIPLGFLGCIVGTLLSRERKA
                     ERTFHELYVRSETGLGAEKALGYEPRTAAGAEKELVHH"
BASE COUNT          427 a          969 c         1023 g          474 t
ORIGIN      
        1 atgtaggtga tcgtcagcag cgcgaagacc gcggcgacgg ccatcgtcgt gcgcagcgag
       61 gcgatgaaca tgtaggccgt gaagatcccc caggcgatga ggtacagacc gaccgcgtgg
      121 ccggcgtccg cttccgggat cttggcggcg tagaactgct cgatggccca gaacgacagc
      181 cagaacgcgc cgtacgagca gaacgcgacg gcgccgaacg tgttgccggt gcggaactcc
      241 caaaggccgg cgacgaactg ggctatgccg ccgtatgtca gcgcgagagc gaacacgacg
      301 ggctcgcctt tgtcggagac gaggccggcg ttgaacatgc tgagcacgaa cgtcgtcagc
      361 gcgaaggccg cgaggccgag gggaccgggg tcggcaatcg gcgtcggaac gaagctgacg
      421 tcgtggcgct cggcagtgcc cgcggtcgga tcggcctggc cgtcgccagc ggggccgcgg
      481 gtcgggacgg acgaggcttc catgtggact cctccttggg aggcgggcac gggcgaacgt
      541 gcccgaagta cgggttgccc cttgtgatgc cgcgcacgag cccgcctgcc accaggggcg
      601 gtccggccgc ggacgccccc ggcgttcggc accgaacgcc ccgcccggcg catccgactt
      661 ggttgagcgc aattgcggcc gggtatgtca ggcgacggac agcgcttccc agcgaaggag
      721 gagagggaga tggctgaatc gaccgcgccg cgtgggaacg aggccgatgc cgcgagggcg
      781 gacacgtccg ccgactcgtc gatcgactgg cagtcgatcg aacgcgagcc cgagttccag
      841 gagctggtgc acgctcgccg ctcgttcgtg atccccggga cgatcttctt cctgtcctgg
      901 tacatgggct tcatcatcct gacggcggtc gctccggact tcatgggcga gcgcgtctac
      961 caaggcctga cggtcgggta cgtgctggcg ctctcgcaat tcgtgatggt cctcgtgctc
     1021 ggcctcatgt acctgcgcaa ggccgaccgg gtgttcgacc ccctcgccga gcgcgtgatc
     1081 gcgcgctacg gggaggacgg gctgcgcccg caggacgccg ccacgcatga ggagcgggcg
     1141 tcgcgaaccg ccgggaccac ctcgccgcgg gagacggtgc gatgacggtt atcgcggcag
     1201 tcaacacgac ggcggtcgtc atcttcgcga tcgtcctgtc gatcacgctc ggcatcacct
     1261 actgggcgtc gcagcgagtg tcgggcgccg agaccttcta cgcggcgggg cggcagatca
     1321 ccggctcgca gaacggtctc gcgatctccg gcgactacct ctcggcggcg tcgttcctgg
     1381 gcatcgccgg gctgatctac ctctacggct tcgatggctt cctgtactcg atcgggttcc
     1441 tcgtcgcctt cctcaccgtg atgttcctgc tcgccgagcg catgcgaaac gccggcaagt
     1501 acacgatcgc cgacgtgctc gcgttccggc tcaacgagaa gccggcccgt gtggcggcgg
     1561 cgaccgggac gctgtcggtc gcggccttct acctcatcgc gcagatggtc ggcgcgggag
     1621 tcctcatcga gaagctcgtg ggcatcaact tctcgctgtc ggtcctcatc accggcacct
     1681 tcatgctctg ctacgtcgtc ttcggcggga tgctggcgac cacgtgggtg cagatcatca
     1741 aggccgtcct gctgatgacc ggcatcgtcg tgatgtcgct cttcgtcctc gagcgggtcg
     1801 gcttcaaccc gatcgagctg ttcaaccggg ccgaggcgaa cgtgggcaag gagacgacct
     1861 tctcgctcgc gccgggcacg ttcctgaaga acgacatcga caagatctcg ctcgggctgg
     1921 cgctcgtgct cgggaccgcc ggcctgccgc acatcctcat gcgcttcttc acggtgccca
     1981 acgcgaaggc ggcgcggagc tcggtcgtct gggcgatgtt cctgatcggc ttcttctacc
     2041 tgctgaccac gtgcatcggc ttcggcgccc gcgcgctgct cggcgagggc ggcgtggagg
     2101 cggccggcaa gggcggcaac ctggcggcgc cgaacctggc gcaggagctc ggcggcggcg
     2161 acggcacgtt cggcggcgac ctcttcctgg cggtgatcgc cggcgtggcg ttcgcgacga
     2221 tcctcgcggt ggtcgcaggc ctcgtgctct cggcctcgag tgcggtcgcg cacgacatct
     2281 ggtcgagcgt gatccgcaag caccacgact ccgagcgcga agaggtggtg gtggcgaaga
     2341 tcgccgccgt cggcatcggg atcatcgcaa tggtcatcgc catcgtcggc ggggaggccc
     2401 tgaacgtgtc gttcatggtg ggcctcgcct tcgcgatcgc ggcgagcgcg aacttcccgg
     2461 cgctgctgct cgccctgtcg tggccgcggt tcaacacgac cggagcggtg acgggcgtgc
     2521 tcgcgggcgt cggctccgcc ctggtgctca tcatcatcag cccgatcgtg tggggcggtc
     2581 cgcccggcga gccggacacc ggcgcgttca cgtggtacga cctcaacaac ccggggatca
     2641 tctcgattcc gctcggcttc ctcggctgca tcgtcggcac gctgctcagc cgcgagcgca
     2701 aggccgagcg gaccttccac gagctgtacg tccggtccga gaccggcctg ggcgcggaga
     2761 aggcgctcgg atacgagccc cgcaccgccg ccggcgccga gaaggagctg gtgcaccact
     2821 agcacgcagt cggccggggc cgggcgtcca cgtcgcgggc gcccggcctc gcggtttacg
     2881 agcggcgctt gcg
//
LOCUS       DASQWN010000420         4515 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_531152, whole genome shotgun sequence.
ACCESSION   DASQWN010000420 DASQWN010000000
VERSION     DASQWN010000420.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 4515)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4515)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4515
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_531152"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..689)
                     /locus_tag="VE686_07945"
     CDS             complement(<1..689)
                     /locus_tag="VE686_07945"
                     /inference="COORDINATES: protein motif:HMM:NF014684.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0015803 - branched-chain amino acid
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid ABC transporter
                     permease"
                     /protein_id="HYY84416.1"
                     /translation="MDCHLDIFFLEAVLNGVLLAGLLALLALGLNLVFGVIDVVWISY
                     AELVMVGMYGIYYAHKGGAPFLVAAVLGIVLVAVAGALMHYLVIRPVLEQPPINQLLV
                     TGGVLFFLQAAATMAFGVEFRSIGIRLGSVNAFDMSFAWARIITFGVALAGILALWLF
                     LTRTYMGTAIRAISQDRQIMPLMGVDARRVYLVTSAIGGGLHHQPVHRRRGIVHGDRV
                     GLRHRLPVLHGG"
     gene            complement(689..1393)
                     /locus_tag="VE686_07950"
     CDS             complement(689..1393)
                     /locus_tag="VE686_07950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012043036.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HYY84417.1"
                     /translation="MLSLTNVDAAYGSFQALFGVSMRVEAGEAVAVIGANGAGKTTLL
                     RVISGLLPASGGDMTMDGVSLRTIAPHRIVATGIAHVPESRRLFPQLSVEANLKMGAY
                     MPAARARFAERLDYVYGLFPRLKERRGQLAGTMSGGEQQMCAIGRALMSGPKLVLLDE
                     PSMGLAPVVVAQVFELVRRIRAEGYTVLIVEQNVQQVLKVADRAYLLEVGRIKTAGTS
                     AELLASDDVRRAYMGL"
     gene            complement(1398..2132)
                     /locus_tag="VE686_07955"
     CDS             complement(1398..2132)
                     /locus_tag="VE686_07955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018272977.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HYY84418.1"
                     /translation="MAMLSVSGLTKRFGGFTAVKDVSFEVEQGEILGLIGPNGSGKST
                     TFNCIAGMHPPTAGSIVFEGAEIAGLVPNRVCHRGIGRTFQIPRPFHGLSLVENVALS
                     AFFGQDRAVSRSECWRLAEQALATVGLPADGRAGTDGLGAAALKKLELARALATQPRL
                     LLADESLNGLDHGEMEQAADMLRRIRDVQGITIVWVEHIMGVLMRVVDRVVVLDHGEV
                     IFRGKPKDAQADPRVVEVYLGSEAVA"
     gene            complement(2166..3446)
                     /locus_tag="VE686_07960"
     CDS             complement(2166..3446)
                     /locus_tag="VE686_07960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007613299.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HYY84419.1"
                     /translation="MTKLFGASIALALALTAGSAEAQVKIGVIYDYTGAFAGGGSKAA
                     AIGTKIAIDMVNEKGGVEGKKIEAIYADAQSKTDVAINEAERLLNDAKVDLVMGFFSS
                     AQCVPIAAKVDAAKKFMWIDVCVATAVMKDRNLQYVFRPQVHSDQYGEASCMFVSENA
                     KAKLGKEPKDVKIAVIHEDGPYGAGIAALNESKCKSLGMQVVHKEGYAATSSDLSALV
                     SKLRRAQPDVILHTGYNPDITLFLRQAKEAGLKWSALIGHGAGYSQIDKLYETFKEEV
                     DYLYNVDPVAAQLLDAKTLAPGLGDLTAEMVKRYKAETGANEVPTHVSSGFNQTWVFL
                     TDVLPRAIKKHGGHDPEALRKAALETDIPVGGTIQGYGVKFYPPGHALSGQSERSLPV
                     VMQYIKGETKVVSPAAIKTADPVLPLPKGHAFAR"
     gene            3569..4315
                     /locus_tag="VE686_07965"
     CDS             3569..4315
                     /locus_tag="VE686_07965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016842921.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY84420.1"
                     /translation="MATEDFVAGGYRYIPAVFQYSGGVASLPGHAIRRVRFRNPVPLA
                     VGFGRIERIITDAGRPLTSFCACELRSPAPFTDEGFRAFNEIYVVTLERWGIFQAGRN
                     PVARSNVCPEIDPPGEPSFYAFSFTTRDPAPAPSFVVAGSGEAQEGAARYSERTVRFG
                     ETTPDAMRDKAAYVLGEMERRMALLGFSWADATAAQVYTVHDIHPFLGDEIVRRGAAR
                     GGVTWHFCRPPVHGLEYEMDCRGIADEHIA"
BASE COUNT          711 a         1535 c         1572 g          697 t
ORIGIN      
        1 ccaccatgaa gaacaggaag gcgatggcgt agccccactc ggtcgccatg cacgatcccc
       61 cgacggcgat gaactggctg atgatgaagg ccgccaccga tcgccgaggt gacgaggtac
      121 acgcggcggg cgtcgacgcc catgagcggc atgatctgcc ggtcctgcga gatcgcccgg
      181 atcgccgtcc ccatgtaggt ccgcgtcagg aacagccaca gcgccaaaat tcccgcgagg
      241 gccacgccga aggtgatgat gcgcgcccag gcgaacgaca tgtcgaaggc gttgaccgac
      301 ccgagccgga tgccgatcga gcggaactcg acgccgaacg ccatggtggc ggcggcctgc
      361 aggaagaaca gcacgccgcc ggtgacgagg agctggttga tgggcggctg ctcgagcacc
      421 ggccggatca cgaggtagtg catcagcgcc cccgcgacgg cgacaaggac gatgccgagc
      481 acggcggcga cgaggaacgg cgcgccgccc ttgtgggcgt aatagatgcc gtacatcccg
      541 accatgacga gctcggcgta ggagatccac accacgtcga tgaccccgaa gaccaggttg
      601 agcccgagcg ccagcagcgc cagcaggccg gcgagcagca cgccgttcag cacggcctcg
      661 aggaagaaga tgtcgaggtg gcagtccatc acagccccat gtacgcgcgc cgcacgtcgt
      721 cgctcgcgag gagctcggcg gaggtgccgg cggtcttgat gcggccgacc tcgagcaggt
      781 aggcgcggtc ggcgaccttg agcacctgct gcacgttctg ctcgacgatg agcaccgtgt
      841 agccctcggc acggatgcgg cggacgagct cgaagacttg cgccacgacc acgggcgcga
      901 ggcccatgga gggctcgtcg aggagcacga gcttcggccc gctcatgagc gcgcggccga
      961 tggcgcacat ctgctgctca ccgcccgaca tggtgccggc gagctggccg cggcgctcct
     1021 tgaggcgcgg gaacaggccg tagacgtagt cgaggcgctc ggcgaagcgc gcccgggcgg
     1081 cgggcatgta ggcgcccatc ttgaggttcg cctcgacgga gagctgcggg aacagccgcc
     1141 ggctctcggg cacatgcgcg atgccggtcg cgacgatgcg atgcggcgcg atcgtgcgca
     1201 gggacacgcc gtccatggtc atgtcgccgc cgctcgccgg cagcaggccc gagatgacgc
     1261 gcagcagcgt ggtcttgccc gcgccgttcg cgccgatcac cgccacggcc tcgccggcct
     1321 cgacgcgcat cgacacgccg aacagggcct ggaaggagcc gtaggcagcg tcgacgttcg
     1381 tcagcgagag catgggatca ggccaccgcc tcggagccga ggtagacctc gacgacgcgc
     1441 ggatcggctt gcgcgtcctt cggcttgccg cggaagatga cctcgccgtg atcgagcacg
     1501 accacgcgat cgaccacgcg catgagcacg cccatgatgt gctcgaccca cacgatggtg
     1561 atgccctgca cgtcgcggat gcggcgcagc atgtcggcgg cctgctccat ctcgccgtga
     1621 tcgaggccgt tcaggctttc gtcggcgagc aggagccgcg gctgggtggc gagcgcgcgg
     1681 gcgagctcga gcttcttcag cgccgccgcc ccgagtccgt cggtgccggc ccggccgtct
     1741 gccgggagcc cgacggtcgc gagcgcttgc tcggcgaggc gccagcactc gctgcgcgac
     1801 acggcgcggt cctggccgaa gaacgccgac agggcgacgt tctcgacgag gctgaggccg
     1861 tggaagggcc gcgggatctg gaacgtccgg ccgatgccgc gatgacagac gcggttgggc
     1921 acgaggccgg cgatctccgc gccctcgaag acgatgctgc ccgccgtcgg cggatgcatg
     1981 ccggcgatgc agttgaaggt cgtgctcttg cccgagccgt tcgggccgat gaggccgagg
     2041 atctcgccct gctcgacctc gaacgacacg tccttgacgg ccgtgaagcc gccgaagcgc
     2101 ttggtcagcc cggagacgct gagcatcgcc atggagcgct ccgggcggac gagacgccgc
     2161 gccggtcagc gcgcgaaggc gtggcccttg ggcagcggca gcacggggtc ggcggtcttg
     2221 atcgccgccg gcgagaccac cttcgtctcg cccttgatgt actgcatcac caccggcagg
     2281 gagcgctcgc tctggcccga gagcgcgtgc ccgggcgggt agaacttcac gccgtagccc
     2341 tggatggtgc cgccgaccgg gatgtcggtt tcgagcgccg ccttgcgcag ggcctcggga
     2401 tcgtgcccgc cgtgcttctt gatggcgcgc ggcagcacgt cggtgaggaa gacccaggtc
     2461 tggttgaagc cgctcgagac gtgcgtcggc acctcgttgg cgccggtctc ggccttgtag
     2521 cgcttgacca tctcggccgt gaggtcgccg aggccgggcg cgagcgtctt ggcgtcgagg
     2581 agctgcgccg ccacggggtc gacgttgtag aggtagtcga cctcctcctt gaaggtctcg
     2641 tagagcttgt cgatctggct gtagccggcg ccgtggccaa tgagcgcgct ccacttgaga
     2701 cccgcctcct tggcctggcg caggaagagc gtgatgtcgg ggttgtagcc cgtgtgtagg
     2761 atcacgtccg gctgcgcgcg gcgcagcttc gagacgagcg ccgagaggtc gctcgacgtc
     2821 gccgcatagc cctccttgtg caccacctgc atgccgagcg atttgcactt cgattcgttg
     2881 agcgccgcga tgccggcgcc gtagggaccg tcctcgtgga tgacggcgat cttcacgtcc
     2941 ttcggctcct tgccgagctt cgccttggcg ttctcggaca cgaacatgca ggacgcctcg
     3001 ccgtactggt cggagtgcac ctgcgggcgg aagacgtact gcaggttccg gtccttcatg
     3061 acggccgtcg cgacgcagac gtcgatccac atgaacttct tggccgcgtc gaccttggcg
     3121 gcgatgggca cgcattgcgc gctcgagaag aagcccatga cgaggtcgac cttggcgtcg
     3181 ttgaggagcc gctcggcctc gttgatggcg acgtcggtct tcgactgcgc gtcggcgtag
     3241 atggcctcga tcttcttgcc ctcgaccccg cccttctcgt tgaccatgtc gatggcgatc
     3301 ttggtgccga tggcggcggc cttcgacccg ccgcccgcga aggcgccggt gtagtcgtag
     3361 atgacgccga tcttcacctg cgcctcggcg ctgccggccg taagcgcaag ggcgagcgcg
     3421 atcgaagctc cgaacagctt tgtcatgaag ttcctccccg aggacgctcg agcgcctgta
     3481 ttctcgtctt gaatgcgagt gtgcgaaggg tcacaaagcc ttgtcaatgg gccaaggctt
     3541 cggcccgtgc gcggggagag gaaagacaat ggcgaccgag gacttcgtgg cgggcgggta
     3601 ccgctacatc ccggcggtgt tccaatactc gggcggcgtc gcgtcgctcc cgggacacgc
     3661 catccggcgc gtgcgcttcc gcaatccggt gccgctcgcc gtgggcttcg gcaggatcga
     3721 gcgcatcatc accgacgcgg gacggccgct gacctcgttc tgcgcctgcg agctgcgctc
     3781 gcccgccccg ttcacggacg agggttttcg cgccttcaac gagatctacg tcgtgaccct
     3841 cgagcgctgg ggcattttcc aggcgggccg caacccggtc gcgcgcagca acgtgtgtcc
     3901 cgagatcgac cctccgggcg agccctcgtt ctacgcgttc tcgttcacga cgcgggatcc
     3961 cgcccccgcc ccgagcttcg tcgtggccgg cagcggcgag gcgcaggaag gcgccgcgcg
     4021 ctacagcgag cgcacggtac gcttcggcga gaccacgccc gacgccatgc gcgacaaggc
     4081 ggcttacgtg ctcggcgaga tggagcgccg catggcgctc ctcggcttct catgggccga
     4141 cgccaccgcc gcccaggtct acacggtgca cgacatccat ccgttcctcg gcgacgagat
     4201 cgtgcgccgg ggcgcggcac gcggcggcgt cacgtggcac ttctgccgtc cgcccgtgca
     4261 cgggctcgag tatgagatgg actgccgcgg catcgccgac gagcacatcg cctgaacggc
     4321 cgccggtgcg gcacattacc ttacgtcatg ctccagcccc attgtcgccg cagtccgccg
     4381 ccacctcctg ccctcgcaca gccaagcacc gcgaggggcc tcaatgctgc accaggacgc
     4441 caccgaaacc gccgacagcg gcgaagacct gaagggaatc gagcgcacgc tcgtcgcctc
     4501 gatcgcgctg atgcg
//
LOCUS       DASQWN010000421         3578 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1163152, whole genome shotgun sequence.
ACCESSION   DASQWN010000421 DASQWN010000000
VERSION     DASQWN010000421.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 3578)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3578)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3578
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1163152"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1418)
                     /locus_tag="VE686_07970"
     CDS             complement(<1..1418)
                     /locus_tag="VE686_07970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018238387.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mandelate racemase"
                     /protein_id="HYY84421.1"
                     /translation="MSSAPRVRLEEVERYERDVPLRLPFRFGVTTVTHATQAVVRARI
                     ALADGRTATGVAAESLASKWFEKSPAFTDVQNHDQLRQALQLAIELYRARGLDTPFGL
                     CAATYHDQIARGADLGLNPLVASYGPALLDRAIVDALGRALGLSFPAMIRDNVVGMAV
                     GEITPDLAGFDLSRFLSALSPGASIAVRHTVGMVDPLEAADQKAGERVNDGLPETLAE
                     VARHYRGRFYKLKVGGDVAADLDRLTRIAAVLDREVGDYRATLDGNEQYEDVEGIGEL
                     WRRMREAPALERLVASILFIEQPIKRAVALSRPVGALARERPLIVDESDGEVSSFPQA
                     LGLGYSGVSSKTCKGFYKSILNAARVARLNAEGREPRAFMSAEDLTTWPGVSVQQDLA
                     LVSLLGLEHVERNAHHFIDGMSFAPAAEQDAFASAHPDLYYKTEGAPARLRVVEGRVA
                     LRSLDRPGFAVDAEMDFSAMRP"
     gene            complement(1419..2246)
                     /locus_tag="VE686_07975"
     CDS             complement(1419..2246)
                     /locus_tag="VE686_07975"
                     /inference="COORDINATES: protein motif:HMM:NF013429.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sugar phosphate isomerase/epimerase family
                     protein"
                     /protein_id="HYY84422.1"
                     /translation="MNRLSLCNEVVRELPFARQCALAAALGYDGLEIAPFTLGEEAYR
                     MPAAERAQVRRTCADAGIAVSGLHWLLVAPKGLSITSSDPAVRVKTLEVMRGLIALCA
                     DLGGSYLVHGSPAQRGLDPDDRAGSVQRGEEAWAAVARDAEAAGVTYCIEPLAPRETD
                     FVNTVAEAVTIVERIGSPALRTMIDTSAAAAAEAEPVADVVERWMPTGLIAHVQLNDR
                     NRRGPGQGDDRFRAILAALKRTGYSGWLAMEPFDYVPDGATCAARAIGYVQGVMEDL"
     gene            complement(2302..>3578)
                     /locus_tag="VE686_07980"
     CDS             complement(2302..>3578)
                     /locus_tag="VE686_07980"
                     /inference="COORDINATES: protein motif:HMM:NF013584.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016810 - hydrolase activity, acting on
                     carbon-nitrogen (but not peptide) bonds [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="amidase"
                     /protein_id="HYY84423.1"
                     /translation="LGAVSREMEAGSAASGPFHGVPFVVKDLLADCAGVTTTAGSAFF
                     TGDPGAAADSAAVRRMRACGLAIVARTKTSEFGLAPTTEPRCGGPVRNPWGRALSPGG
                     SSGGSAALVAARAVPMAHATDGGGSIRIPASLCGLFGLKPSRGRISLAPLGEALAGAS
                     AQHCVSVSVRDSAALLDALSGPEPGDPYGVPSSDVPFLASAGRDPGSLRIAVQKRSNG
                     GPETNPEVVRAVEDAARLLESLGHTVEEAAPDYAFPAVEEALMTVMAANLWTNISARA
                     GARPLDEAGFEPVTWAYAMAGRDMPASHYIRAVQAFHRIGRQVGAFFERYDVLLSPTI
                     ARASLPLGTVRMDGTVEDFRAATAPMIAFTAVCNVSGTPAASVPLGWSDEGLPIGIQI
                     AAAWGAEATLLSLAGQLERAQPWRSRHPSVCA"
BASE COUNT          516 a         1251 c         1339 g          472 t
ORIGIN      
        1 atggggcgca tggcggagaa gtccatctcg gcgtccaccg caaacccggg cctgtcgagg
       61 gagcggagcg cgacgcggcc ctcgacgacg cgcaggcgcg ccggcgcgcc ctcggtcttg
      121 tagtagaggt cggggtgcgc gctcgcgaag gcgtcctgct cggcggcagg ggcgaacgac
      181 ataccgtcga taaagtggtg cgcgttgcgc tccacgtgct cgagcccgag gagcgagacc
      241 agggcgagat cctgctgcac gctcacgccc ggccacgtcg tgaggtcctc ggccgacatg
      301 aaggcgcgcg gctctcgccc ttccgcattc agacgcgcca cccgggcggc gttgaggatc
      361 gacttgtaga agcccttgca ggtcttgctc gacacgccgg aatacccgag gccgagcgcc
      421 tgcgggaacg acgacacttc gccgtccgac tcgtcgacga tgagagggcg ctcccgcgcg
      481 agcgccccga cggggcgcga caacgcgacg gcgcgcttaa tcggctgctc gatgaacagg
      541 atcgatgcga ccagccgctc gagggcgggg gcctcgcgca tgcgccgcca cagctcgccg
      601 atgccttcca cgtcctcgta ctgctcgttg ccgtcgagcg tggcgcggta gtccccgacc
      661 tcccggtcga gcacggccgc gatgcgggtc aggcgatcga gatcggccgc gacgtcgcct
      721 ccgaccttga gcttgtagaa gcgcccccgg taatgccgcg cgacttcggc gagggtctcg
      781 ggcaggccgt cgttgacgcg ttccccggcc ttctggtcgg cggcctcgag cgggtcgacc
      841 atgccgacgg tatgccgcac agcgatcgag gcgccggggc tcaacgccga caggaagcgc
      901 gagaggtcga agcccgccag gtccggcgtg atctcgccga cggccatgcc cacgacgttg
      961 tctcggatca tggccggaaa cgacaggccg agcgcccgcc cgagggcgtc cacgatggcg
     1021 cggtcgagga gagccggacc gtatgaggcc acgagcgggt tgagcccgag gtcggcgccg
     1081 cgcgcgatct gatcgtggta ggtcgcggca cagagtccga agggcgtgtc caaaccgcgc
     1141 gcgcggtaga gctcgatcgc gagctgcaat gcctggcgca gctgatcgtg gttctgaacg
     1201 tccgtgaagg ccgggctctt ctcgaaccat ttggaggcga gcgactcggc ggcgacgccc
     1261 gttgccgtgc gcccgtccgc gagggcgatg cgggcgcgca ccacggcctg cgtcgcgtgg
     1321 gtgaccgtcg tgacgccgaa gcggaacggc aggcgcagcg gcacgtcccg ctcgtagcgc
     1381 tcgacctcct cgagcctgac cctgggcgcg ctgctcacct aaagatcctc catcacgcct
     1441 tggacgtagc cgatggcgcg agccgcgcag gtcgcgccgt cgggcacgta gtcgaagggc
     1501 tccatggcga gccagccgga atagcccgtg cgcttgaggg cggcgaggat cgccctgaag
     1561 cggtcgtcgc cctggcccgg gccgcggcgg ttgcggtcgt tgagctgcac gtgggcgata
     1621 aggcccgtcg gcatccagcg ctcgacgaca tcggccacgg gctcggcttc ggccgccgca
     1681 gcggccgagg tgtcgatcat ggtccgcagg gccgggctgc cgatgcgctc gacgatcgtc
     1741 accgcctccg cgaccgtgtt gacgaagtcc gtctcgcgcg gcgcgagcgg ttcgatgcag
     1801 tacgtcacgc ccgcggcctc ggcatcgcgg gcgaccgccg cccaggcctc ctcgccgcgc
     1861 tggacggaac cggcgcggtc gtccggatcg aggccgcgct gcgccggtga gccgtgcacg
     1921 aggtaggagc cgccgagatc ggcgcagagc gcgatcagcc cccgcatgac ctcgagcgtc
     1981 ttgacccgga cggcggggtc ggaggaggtg atcgagagcc ccttcggcgc cacgaggagc
     2041 cagtgcaggc cgctcaccgc gatccctgcg tcggcgcagg tgcggcgcac ctgggcgcgc
     2101 tcggccgcgg gcatgcggta ggcctcctcg ccgagggtga agggggcgat ctcgaggccg
     2161 tcgtagccga gggccgccgc gagcgcgcat tgccgcgcga aggggagctc gcgcacgacc
     2221 tcgttgcaga gcgaaagcct gttcatcggc gcgcagtgtt ggccttgtgc gccagtgcgg
     2281 tcaatcgacc accgcgggcg ctcaggcgca taccgaagga tggcgcgagc gccacggctg
     2341 cgcgcgctcg agctgccccg cgagcgacag gagggtcgcc tcggcgcccc aggcggcggc
     2401 gatctggata ccgatcggca agccctcgtc gctccagccg agcggcaccg aggcggccgg
     2461 agtgcccgac acgttgcaca ccgccgtgaa ggcgatcatc ggcgcggtcg cggcccggaa
     2521 atcctcgacc gtgccgtcca tgcgcaccgt cccgagcggc aggctcgcgc gggcgatggt
     2581 cggcgagagg agcacgtcgt agcgctcgaa gaacgcgccg acctgccggc cgatgcgatg
     2641 gaaggcctgg acggcgcgga tgtagtgcga ggcgggcatg tcgcgtcccg ccatggcgta
     2701 ggcccaggtg acaggctcga agcccgcctc gtccaacggc ctcgcaccgg cacgggcgct
     2761 gatgttggtc cagaggttcg cggccatgac ggtcatgagc gcctcctcga cggccgggaa
     2821 ggcgtagtcg ggcgcggcct cctcgacggt gtggccgagg ctctctagga gccgcgccgc
     2881 gtcctcgacc gcgcgcacca cctccgggtt ggtctcgggc cctccgttcg agcgcttctg
     2941 cacggcgatg cgcaggctgc ccggatcgcg tccggcgctc gccaagaacg gcacgtcgga
     3001 ggagggcacg ccgtaggggt cgcccggctc ggggccgctc aaggcatcga ggagcgctgc
     3061 gctgtcgcgc accgagacgg agacgcagtg ctgcgcgctg gcgcccgcca gcgcctcgcc
     3121 gaggggtgcc aggctgatgc gcccccgcga gggcttcagg ccgaagaggc cgcacagcga
     3181 cgccgggatg cggatcgagc cgccgccgtc cgttgcgtgc gccatcggca cagcgcgggc
     3241 ggcgacgagg gccgccgagc cgccgctcga gccgccgggc gagagggcgc gaccccaggg
     3301 gttgcggacc gggccgccgc agcgcggctc cgtcgtcggg gcgagaccga actcgctcgt
     3361 cttggtccgg gcgacgatcg cgagcccgca cgcccgcatg cggcgcacgg cggcgctgtc
     3421 ggccgcagcg ccgggatcgc cggtgaagaa tgcagagcct gccgtggtgg ttacgcccgc
     3481 gcagtctgcc agcaggtcct tgaccacgaa cggaacgccg tggaacggac cgcttgcggc
     3541 cgagcccgct tccatctcgc gcgacacggc gccgagct
//
LOCUS       DASQWN010000422         2341 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1363062, whole genome shotgun sequence.
ACCESSION   DASQWN010000422 DASQWN010000000
VERSION     DASQWN010000422.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2341)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2341)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2341
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1363062"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(94..1563)
                     /gene="sufB"
                     /locus_tag="VE686_07985"
     CDS             complement(94..1563)
                     /gene="sufB"
                     /locus_tag="VE686_07985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019903787.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0016226 - iron-sulfur cluster assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S cluster assembly protein SufB"
                     /protein_id="HYY84424.1"
                     /translation="MPAVQETIDQVRLIDVDQYKYGFTTDVEMDKAPKGLSEDIVRFI
                     SAKKGEPEWMLEWRLDAYRRWLTMTEPTWARVDYEPIKYNEIYYYAAPKKNAAPKTLD
                     EVDPAILETYKKLGIPLREQEILAGVQTSRVAVDAVFDSVSVATTFKEELKKAGVIFM
                     PISEAIREHPDLVRKYLATVVPVTDNYFATLNSAVFTDGSFVYVPPGVRCPMELSTYF
                     RINEQNTGQFERTLIIADKGSYVSYLEGCTAPKRDENQLHAAVVELVALDDAEIKYST
                     VQNWFPGDAEGKGGIYNFVTKRGDCRGRNSVITWTQVETGSAITWKYPSCILRGEGSR
                     GEFYSIAVSNGMQQVDSGTKMIHLGRNTTSRIISKGISAGKSQNTYRGLVSAHRRASN
                     ARNFTNCDSLLIGQECGAHTVPYIESKNASAVFEHEATTSKISEDQLFYCLQRGLSAE
                     EATALIVNGFVKDVLQKLPMEFAVEAQKLIAISLEGSVG"
     gene            complement(1631..>2341)
                     /locus_tag="VE686_07990"
     CDS             complement(1631..>2341)
                     /locus_tag="VE686_07990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009490944.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class V-fold PLP-dependent
                     enzyme"
                     /protein_id="HYY84425.1"
                     /translation="ETGVVQPVAEAAALVRAAGGLMHSDAVQAAGRLPVDIGALGADV
                     LTVSAHKLGGPKGVGAIVFASDRIETAERLIRGGGQERGRRAGTENVAGIVGFGLAAE
                     IAGRDLDDEVARLRALRDTLERDLRRVAPEAMIFGEGVQRLPNTTAFAVAGLRAETAL
                     IALDLDGVAVSSGSACSSGKVRRSHVLEAMGVAPGLAEGAIRVSLGWNSTQADVAAFV
                     SGFEKLTERLYKRNANAA"
BASE COUNT          359 a          773 c          796 g          413 t
ORIGIN      
        1 ggccgaaatc ggacgcgcaa gaagcgcgga gagctcggcg cgtgcagcct gcctgtcatc
       61 catcatcgta ccccgttgtg cggcggccaa gcgtcagccg accgagcctt ccagcgagat
      121 ggcgatcagc ttctgggcct cgacggcgaa ctccatgggg agcttctgga gcacgtcctt
      181 gacgaagccg ttgacgatga gcgccgtcgc ctcctcggcc gagagcccgc gctgcaggca
      241 atagaacagc tggtcctcgg agatcttcga cgtcgtggcc tcgtgctcga acaccgcgct
      301 cgcgttcttg ctctcgatgt acggcaccgt gtgcgcgccg cactcctggc cgatgaggag
      361 ggagtcgcag ttggtgaagt tgcgcgcgtt cgaggcccgg cggtgggccg aaacgaggcc
      421 gcggtaggtg ttctgcgatt tgccggccga gatccccttc gagatgatcc ggctcgtcgt
      481 gttccggccg aggtggatca tcttggtgcc tgaatcgacc tgctgcatgc cgttcgacac
      541 cgcgatcgag tagaactcgc cacgcgagcc ctccccgcgc aggatgcagg acgggtactt
      601 ccaggtgatg gccgagccgg tctcgacctg ggtccaggtg atgaccgagt tccggccgcg
      661 gcagtcgccg cgcttggtga cgaagttgta gatgccgcct ttgccctcgg cgtcgccggg
      721 gaaccagttc tggaccgtcg agtacttgat ctcggcgtcg tcgagagcga cgagctcgac
      781 tacggccgcg tggagctggt tctcgtcccg cttcggggcc gtgcagccct cgagatacga
      841 cacgtaggag cccttgtcgg cgatgatcag cgtgcgctcg aactggccgg tgttctgctc
      901 gttgatgcgg aaataggtcg acagctccat cgggcagcgc acgcccggcg gcacgtagac
      961 gaaggatccg tccgtgaaca cggcggagtt caacgtggcg aagtagttgt cggtgaccgg
     1021 gacgaccgtg gcgaggtact tgcgtaccag gtccgggtgc tcgcggatcg cctccgagat
     1081 cggcatgaag atcacgccgg ccttcttgag ctcctccttg aaggtcgtcg cgaccgacac
     1141 cgagtcgaac acggcatcca cggcgacccg ggaggtttgc acgcccgcga ggatctcctg
     1201 ctcccgcagg gggatgccga gcttcttgta ggtctcgaga atggccggat cgacctcgtc
     1261 gagggtcttc ggcgcggcgt tcttcttggg cgcggcgtaa taatagattt cgttgtactt
     1321 gatgggctcg tagtccaccc gcgcccaggt cggctcggtc atggtgagcc agcgccggta
     1381 ggcgtcgagg cgccactcca gcatccactc gggctcgccc ttcttggccg agatgaagcg
     1441 gacgatgtcc tcggacaggc ccttgggggc cttgtccatc tcgacgtccg tcgtgaaccc
     1501 gtacttgtat tggtcgacgt cgatcaggcg tacctgatca atcgtttcct gcaccgcagg
     1561 catttgggtc tcccaccgct cacggcttca agggccgcgg gttgacgagg tcaggaacaa
     1621 cgccgctgcg tcatgcagcg ttcgcgttcc gcttatatag gcgctctgtc agcttttcga
     1681 accccgaaac gaacgccgcc acgtcggcct gcgtcgaatt ccagccgagg ctgacccgga
     1741 tagcgccctc cgcgagcccc ggggcgaccc ccatggcctc gagaacgtgc gagcgccgca
     1801 ccttgcccga cgagcaggcc gagcccgacg agaccgcgac gccgtcgagg tcgagggcga
     1861 tgagggcggt ctcggccctg agccctgcga ccgcaaacgc cgtggtgttg ggcaggcgtt
     1921 ggacgccttc gccgaagatc atggcttcgg gcgccacgcg acggaggtcg cgctcgaggg
     1981 tgtcccgcaa agcccggagc cgcgccacct cgtcgtcgag gtcgcgcccg gcgatctcgg
     2041 ccgcgagccc gaacccgacg atcccggcga cgttctcggt gccggcacgc cggccgcgct
     2101 cctggcctcc gccacggatg aggcgctcgg cggtttcgat gcgatccgag gcgaaaacga
     2161 tggcgccgac gcccttcggc ccgcccagct tgtgcgccga gacggtcagg acgtccgccc
     2221 cgagggcgcc gatgtcgacc gggaggcgcc cggccgcctg gacggcgtcg ctgtgcatca
     2281 ggccgccggc ggcgcgtacg agggccgccg cttctgcgac cggctggacc acgccggtct
     2341 c
//
LOCUS       DASQWN010000423         3000 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1363120, whole genome shotgun sequence.
ACCESSION   DASQWN010000423 DASQWN010000000
VERSION     DASQWN010000423.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 3000)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3000)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3000
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1363120"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            172..1023
                     /locus_tag="VE686_07995"
     CDS             172..1023
                     /locus_tag="VE686_07995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018494355.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0015803 - branched-chain amino acid
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid ABC transporter
                     permease"
                     /protein_id="HYY84426.1"
                     /translation="MSLFQLLNGLTFAALLFVVASGFTLIFGLLRIVNLAHGALYLFG
                     GYVGYTVGTHTGSFALAAVAAMASVALIGLVLDQGLLRFVRGFELRQVLLTLGVAFML
                     NDLALVIWGGDTFTVPIPSFLQGAIVQFGVFYPKYRLFVLLVGVLVFIGLWLLLNRTR
                     LGALIRAGVDDAEMVEASGINIRRVFLLTFMLGSALSGLGGLLGGAFLTLYPSADSEI
                     LVFSLAVVIIGGRGSLEGAAIGSLFIGLFNTFGQVWFPELAYFVIFGPMALLLAFRPL
                     GLFGRAA"
     gene            1020..1991
                     /locus_tag="VE686_08000"
     CDS             1020..1991
                     /locus_tag="VE686_08000"
                     /inference="COORDINATES: protein motif:HMM:NF014684.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0015803 - branched-chain amino acid
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid ABC transporter
                     permease"
                     /protein_id="HYY84427.1"
                     /translation="MNAATKAAPGRADLRVVILVPAALLVLAVLPFILPTYQVSVATQ
                     ILIFAVLAMSIDVLAGYAGRTSLCHGAIFGVSTYVVLYGSTVAGLPVLASMAVGVLAA
                     TVLAAVFGVLAVRTSGVYFLLLTLALGLIVWGVCLRWTAVTGGENGLRGQLQVGAFAQ
                     PRALYLAVLAGAAVMSFGMWRFVHSPFGLTLRGIKDSESRMRSLGYNVPLHLVIAFTV
                     SGFFAGMAGAMYAVFNNFVSPSTVQLSQSVAGLLMAIVGGIGTLFGSVVGAFLIIALE
                     QAVSLYTERWLMVLGAMFVLIMIFAPEGVVGKARALLARSAQRRGRQ"
     gene            1988..>3000
                     /locus_tag="VE686_08005"
     CDS             1988..>3000
                     /locus_tag="VE686_08005"
                     /inference="COORDINATES: protein motif:HMM:NF024850.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HYY84428.1"
                     /translation="MMDRRQFLKTTAGATAATAIGAPAIVQAQGTGPIRIGLLAPLTG
                     VVASGGREMVDGFTMFWEQQGGTLAGRKVEIVTEDDASNPDTALQKARRLVEQANVHF
                     LCGDLLANTGLAVANYVKGNGVPYFIPIIAADDLTQRARIPNVIRIAGYSASQTTHPL
                     GDWAWKQGFKKLATIGQDYTFGHEQCAGLARVFSENGGKVVQQLWHPLNTADFSPYLG
                     QLASAGVDAVFTMQTGADGTRFIQQWANFGLKGRIPLMGSMNCTDQSVIRTMGAEPEG
                     IITPAHFAEGSDNPATQKFVKDYEAKFSKTPSLYGFSMYSGAMWIARALEEVRGEAEN
                     RAA"
BASE COUNT          428 a         1001 c          970 g          601 t
ORIGIN      
        1 catggcgctc gtcgtgcacc cctacatcat gggtgcgccg caccgtctca aatacttccg
       61 caacgcgatc gcgcgcatcc ggcgccagcg cgacgtggtg ttctggaccg gcgagcagat
      121 cctcgactgg tatcggtcgc agcagccgct ccgggcctag tcgtccaagc gatgtccctc
      181 ttccagcttc tcaacgggct gaccttcgcc gcactcctct tcgtggtggc gtcgggcttc
      241 acgctgatct tcgggctcct gcgcatcgtg aacctcgcgc atggcgcgct gtatctgttc
      301 ggcggctacg tcggttacac ggtgggaacg cacaccggga gcttcgcgct cgccgccgtt
      361 gccgcgatgg cctccgttgc cttgatcgga ctcgttctcg accagggact gctgcggttc
      421 gtgcgagggt tcgagcttcg ccaggtgctg ctgacgctcg gcgtcgcctt catgctgaac
      481 gaccttgccc tcgtgatctg gggcggcgac accttcacgg tgccgatccc gtcgttcctc
      541 cagggcgcta tcgtccagtt cggcgtattc tatccgaagt accggctgtt cgtgctcctc
      601 gtcggcgtgc tcgtcttcat cggtctgtgg cttctgctca accgcacgcg gctcggcgcg
      661 ctcattcgtg ccggcgtcga cgacgcggag atggtcgagg cctcggggat caacatccgc
      721 cgcgtgttcc tcctcacctt catgctcggg tcggccttgt cgggacttgg cggactgctt
      781 gggggggcgt tcctgacgct ctatccgagt gccgactcgg agattctggt gttcagcttg
      841 gcggtcgtca tcatcggcgg acgcggcagc ctcgaaggtg cggcaatcgg cagcctcttt
      901 atcggcctgt tcaacacctt cgggcaggtc tggtttccgg agctcgccta cttcgtcatc
      961 ttcggcccga tggcgctcct gctcgcgttt cgtcccctcg gactgttcgg gagggccgca
     1021 tgaacgcggc aacgaaggcg gcgccgggcc gcgccgacct cagggtggtg atcctggtcc
     1081 cggccgcgct gctcgtgctc gcggtcctgc cgttcattct gccgacgtac caggtcagcg
     1141 tcgcaacgca gatcctgatc ttcgccgtgc ttgccatgtc gatcgacgta ctggcgggat
     1201 acgccgggcg cacctcgctt tgccacggcg cgatcttcgg ggtctcgact tacgtcgtcc
     1261 tgtacgggtc gacggtcgcc ggactgcccg tgcttgcctc gatggccgtc ggcgttcttg
     1321 cggcgacggt cctggcggcc gtcttcggcg tcctcgcggt gcggacgtcc ggggtctact
     1381 ttctgctgct gaccctcgcc ctcgggctga tcgtgtgggg cgtctgcttg cgttggacgg
     1441 cagtcacggg cggagagaac ggacttcgcg gccagcttca ggtcggcgcc ttcgcgcagc
     1501 cgcgagccct ttacctcgcg gtgctcgcgg gagccgcggt gatgagcttc gggatgtggc
     1561 gcttcgtgca ctcgcccttc ggtctcacgc tgcgcggcat caaggattcc gagtcgcgca
     1621 tgcgcagcct aggctacaat gttccgctcc acctcgtgat cgccttcacg gtctcggggt
     1681 tcttcgccgg gatggcgggc gccatgtacg cggtcttcaa caacttcgtc agcccctcga
     1741 cggtgcagct gtcccagtcc gtcgctgggc ttcttatggc catcgtgggc ggcatcggga
     1801 cgctgttcgg ctccgtggtc ggcgcgttcc tcatcatcgc cctcgagcag gcggtgagcc
     1861 tctacacgga gcgctggctc atggtgctcg gcgccatgtt cgtcctgatc atgatcttcg
     1921 cccctgaggg ggtcgtcgga aaagcaaggg cgctccttgc ccggagtgca caacggaggg
     1981 gtcgacaatg atggatcgta ggcagtttct gaaaacgacg gccggagcca cggccgccac
     2041 cgcaatcggc gcgccggcca tcgtccaagc tcagggaacc gggccgatcc ggatcggcct
     2101 gctcgcgccc ctcaccggtg tcgtcgcgtc tggcgggcgc gagatggtgg acggcttcac
     2161 catgttctgg gagcagcaag gagggacgct ggctggccgc aaggtcgaga tcgtcaccga
     2221 ggacgacgcc tcgaaccccg acaccgccct ccagaaggcg cgacggctcg tcgagcaggc
     2281 caacgtgcat tttctctgtg gcgacctcct cgccaacacc ggccttgccg tcgcgaacta
     2341 cgtcaagggg aacggcgtcc cctacttcat cccgatcatc gccgccgacg acctgacgca
     2401 acgcgcccgc atccccaacg tgatccgcat cgcgggctac tcggcgagcc agaccaccca
     2461 ccctctcggg gattgggcct ggaagcaggg gttcaagaag ctcgccacca tcggccagga
     2521 ctacaccttc gggcacgagc agtgcgcggg gcttgcgcgg gtgttctccg agaacggcgg
     2581 caaggtcgtc cagcagctct ggcatcccct caatacggcc gacttcagcc cctacctcgg
     2641 ccagctcgcc agcgccggcg tggatgccgt gttcacgatg cagaccggcg cggacggcac
     2701 gcgcttcatc cagcaatggg cgaacttcgg gctcaagggc cgcattccgc tgatgggcag
     2761 catgaactgc accgatcagt cggtgatccg caccatgggt gcggagcctg aagggatcat
     2821 cacgccggct catttcgccg aagggtccga caatccggcc acgcagaagt tcgtcaagga
     2881 ttacgaggcg aagttcagca agacgccatc gctatacggg ttttcgatgt actcgggtgc
     2941 catgtggata gcgagggcgc tcgaggaggt ccggggcgaa gcggaaaatc gggcagcatt
//
LOCUS       DASQWN010000424         2416 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1263924, whole genome shotgun sequence.
ACCESSION   DASQWN010000424 DASQWN010000000
VERSION     DASQWN010000424.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2416)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2416)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2416
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1263924"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            151..426
                     /locus_tag="VE686_08010"
     CDS             151..426
                     /locus_tag="VE686_08010"
                     /inference="COORDINATES: protein motif:HMM:NF025385.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4235 domain-containing protein"
                     /protein_id="HYY84429.1"
                     /translation="MKFLFLPISILSGLLAGFVGKKVFDQVWGLIDEEEPPDSKHRDI
                     TWGRLLLAGAVQGAIFRAVKEATDHASRRGFYRTTGTWPGEKRPDPE"
     gene            571..1950
                     /locus_tag="VE686_08015"
     CDS             571..1950
                     /locus_tag="VE686_08015"
                     /inference="COORDINATES: protein motif:HMM:NF014523.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MlaD family protein"
                     /protein_id="HYY84430.1"
                     /translation="MRSLSAIGRVAAVGALIAAIVLVGLIFFGGAGVGGYKVKARFLN
                     AGQLVKGNPVQVGGVAVGSVEGIKITPDGHAEIELSIDGDHSPLRRGTRAEIRQFSQS
                     GLANRYVDLKLPPDTDDEIPDGGVIETDKTVTQVDLDELYNTLDPETRTALQDFFKGS
                     AAQWRDMADEANVGFEYLNPALSTSRRLFNELTKDTPLLQRFLVDSSEMVTALAERRD
                     DLAALIGNLNATTRALGSQKEALAESIGRLPPFMRRANTTFVNLRSTLDQVDPLVEAS
                     KPVAKRLGPFLSQARAFAADAEPTVRDLSLTIRKRGGGNDLVNLMATFPPLADIATAT
                     KERTVAPGGRRFAVGETRGAFQESVEALKGGAGELGFARPYSSDFLGWLDDFSTTGGG
                     FDALGATARGMVSFAPFLHKDNGTLAYKQYRRCPGSAEAPLPDGSNVLSAEERERLDC
                     EETHRAVPK"
     gene            1947..>2416
                     /locus_tag="VE686_08020"
     CDS             1947..>2416
                     /locus_tag="VE686_08020"
                     /inference="COORDINATES: protein motif:HMM:NF014523.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MlaD family protein"
                     /protein_id="HYY84431.1"
                     /translation="MRRALVVLAVIGVCAAAFVLAGASDQKSDAQTYRIMFDNAFGLT
                     QGGDFRVGGVTAGQTTKFEVDKKPGEAPKAVVTVEVQRPGFGDFRKDASCEILPQSLI
                     GEYYVDCQPGQDREKLPNGVVPVEQTTSTIPTDLVNDIMRRPYRERFRLIITELG"
BASE COUNT          389 a          861 c          817 g          349 t
ORIGIN      
        1 gcgaggccca ggatcgcgac gaacacgatc aggccgggga acagggccag caccgagtaa
       61 tacgtcagcg cggcagccca gtcggtcagg ttgtcgtcct ggaactccct gatggttcgt
      121 ttgagcgttg cccaggtata catctcaggc gtgaagttcc tcttcctgcc catttccatt
      181 ctcagcgggc tcctggcggg gttcgtgggc aagaaggtct tcgaccaggt gtggggcctg
      241 atcgacgagg aggagccgcc ggactcgaag caccgggaca tcacctgggg ccggctgctg
      301 ctcgcggggg cggtccaagg cgccatcttc cgggccgtca aggaggccac ggaccacgcc
      361 tcgcggcgcg ggttctaccg caccaccggc acctggccgg gcgagaagcg ccccgatcct
      421 gagtaaccgc cccatcggga accgcaagaa ccggcgcatt cgtgcgttct cgtaggtaag
      481 agttcacggt tgagctcgga ttccggcttt gggagacccg ccaaatggga gggcggggga
      541 gtcgggacgg tgcgagagga gtaggggtag gtgcgatcgc ttagcgctat cggacgcgtc
      601 gccgcagtcg gcgcgctgat cgctgcgatc gttctcgtgg gcctcatctt cttcggcggc
      661 gccggtgtgg ggggctacaa ggtcaaggcc cgcttcctca acgccggcca gctcgtgaag
      721 ggcaaccccg tccaggtcgg cggggtcgcg gtcggctccg tcgagggcat caagatcacc
      781 cccgacggcc acgccgagat cgagctgtcg atcgacggcg accactcccc gctccgccgc
      841 ggcacccgcg cggagatccg ccagttctcc cagtccggcc tcgcgaaccg ctacgtcgac
      901 ctgaagctcc cgccggacac ggacgacgag atccccgacg gcggcgtcat cgagaccgac
      961 aagaccgtca cccaggtcga cctcgacgag ctctacaaca cgctcgatcc cgagacccgc
     1021 accgcccttc aggacttctt caagggctcg gccgcgcagt ggcgcgacat ggccgacgag
     1081 gcgaacgtcg gcttcgagta cctgaacccc gcgctgtcca cctcgcgccg gctcttcaac
     1141 gagctcacga aggacactcc cctcctccag cgcttcctgg tggacagctc ggagatggtg
     1201 accgccctcg ccgagcgccg cgacgacctc gcggccctca tcgggaacct caacgcgaca
     1261 acgcgcgcgc tcggcagcca gaaggaggcg ctcgccgagt cgatcggccg tctcccgccg
     1321 ttcatgcgcc gtgcgaacac gacgttcgtg aacctgcgct cgaccctcga tcaggtggat
     1381 ccgcttgtcg aggcctcgaa gccggtggcg aagcgcctcg ggcccttcct ctcgcaggcc
     1441 cgggccttcg ccgccgacgc cgagccgacg gtccgcgacc tcagcctcac catccgcaag
     1501 cgcggcggcg gcaacgacct ggtgaacctg atggccacct tcccgccgct ggccgacatc
     1561 gcgacggcga cgaaggagcg caccgtcgcg cccggcggac gccgcttcgc ggtgggcgag
     1621 acccgcgggg cgttccagga gagcgtcgag gcgctgaagg gcggcgccgg cgagctcggc
     1681 ttcgcgcgcc cgtactcgag cgacttcctc ggctggctcg acgacttctc gacgacgggc
     1741 ggcggcttcg acgccctcgg cgcgaccgcg cgcggcatgg tctcgttcgc gccgttcctg
     1801 cacaaggaca acgggaccct cgcctacaag cagtaccggc gctgccccgg ctcggccgag
     1861 gcgccgctgc cggacgggtc gaacgtcctc tcggccgagg agcgcgagcg cctcgactgc
     1921 gaggagaccc acagggcggt gcccaagtga ggcgcgcgct cgtcgtcctc gcggtgatcg
     1981 gcgtctgcgc cgcggcgttc gtcctcgcgg gcgcgtccga ccagaagtcc gacgcgcaga
     2041 cctaccggat catgttcgac aacgccttcg gcctcacgca gggcggcgac ttccgtgtcg
     2101 gcggcgtcac cgccggccag acgacgaagt tcgaggtcga caagaagccc ggcgaggcgc
     2161 cgaaggcggt cgtcacggtc gaggtgcagc gccccggctt cggcgacttc cgcaaggacg
     2221 cgagctgcga gatcctgccg cagtcgctga tcggcgagta ctacgtcgac tgccagcccg
     2281 ggcaggacag ggagaagctg ccgaacgggg tcgtcccggt cgagcagacc acgtcgacga
     2341 tccccacgga cctcgtcaac gacatcatgc ggcgcccgta ccgcgagcgg ttccggctga
     2401 tcatcaccga gctcgg
//
LOCUS       DASQWN010000425         3717 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_333290, whole genome shotgun sequence.
ACCESSION   DASQWN010000425 DASQWN010000000
VERSION     DASQWN010000425.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 3717)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3717)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3717
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_333290"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..426)
                     /locus_tag="VE686_08025"
     CDS             complement(<1..426)
                     /locus_tag="VE686_08025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018043036.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0070206 - protein trimerization [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YbgF trimerization domain-containing protein"
                     /protein_id="HYY84432.1"
                     /translation="MIRQFVLAVFPVVALAGPASAQDAAELVVRLNRLENQSRQMAGQ
                     IEQLQFENRQLKEQARKFQEDVEFRFQDGRPGARPPVAPSASPSQTPSSPPSSPPRPQ
                     RRGDAFDPSHAPGAPGAPQPLGTAQPSAPLGGGMAGGRAQ"
     gene            complement(508..1047)
                     /gene="pal"
                     /locus_tag="VE686_08030"
     CDS             complement(508..1047)
                     /gene="pal"
                     /locus_tag="VE686_08030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012330269.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan-associated lipoprotein Pal"
                     /protein_id="HYY84433.1"
                     /translation="MTVSLPNALLPRALRLAAVLALTLAAAACSGKTDELAGGAGGSG
                     GAGGYGRGGPATPGSAQEFAQSVGDRVFFESDQTDLTPTAVATLDKQAQWLSRYPRYT
                     FLIEGHADERGTREYNFSLGARRAQAVRDYLSSRGISAARIRTVSYGKERPVAVCNDI
                     SCWSQNRRAVTVLDAGANS"
     gene            1341..2381
                     /locus_tag="VE686_08035"
     CDS             1341..2381
                     /locus_tag="VE686_08035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018209917.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BON domain-containing protein"
                     /protein_id="HYY84434.1"
                     /translation="MADPTRYRGERGRGFGEDRYGPRGRDQGSDGGYIAQRGFGNARS
                     GYGPEERGRGDHDRGGRAERSGGDWGYPREDRGRYGAHGGGGRERDEDRRDYGDAAGY
                     GGGGSWRDFRDVTGRDWDDDRFRNPDEFFRGRPDRGERDRGYRGGNESLGGFYGADQG
                     HGRGGRGEDRDERGFLERAGDEIASWFGDDEAARRRAQDAREEGGGYGHRGRGPRNYR
                     RSDERIREDVSDRLMDDPHIDASDIEVGVANGEVVLTGTVENRFAKRHAEDLAESVSG
                     VTHVQNNLRVRQAGGTGEGLTGNAGATASEAAVSNSGGTIEETGRSPGGPVTGRLGQT
                     STPRRRRGPVIE"
     gene            complement(2430..3716)
                     /gene="tolB"
                     /locus_tag="VE686_08040"
     CDS             complement(2430..3716)
                     /gene="tolB"
                     /locus_tag="VE686_08040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009763441.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0030288 - outer membrane-bounded
                     periplasmic space [Evidence IEA];
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Tol-Pal system beta propeller repeat protein
                     TolB"
                     /protein_id="HYY84435.1"
                     /translation="MAALLAVTTAARAELVIDVRRGAFQPIPIAVADFGGEPSLGPQV
                     GGIIANNLKRSGYFIPLDKGRFPGAAPNFDAAPDFGAWKATGVQGLVTGRIARDPSGR
                     LKAEFRLWDVTTGQQVAGQQYFTDPNNWRRIGHIISDAVYTKITGVGGFFDTRVVFVD
                     ESGPKENRRKRLAIMDQDGANVRYLTQGDNLVVTPRYSPATQDIAYMSQASGQQPRVQ
                     VINLETGARQVVGNFPDMTSSPRFSPDGGRIVMSLQQGGNANIYGMDLGSRTTTRITT
                     TNAIDTSPSFSPDGREIVFESDRGGQQQIYVMGADGSNPRRISFGQGSYSQPAWSPRG
                     DYIAFTKRTNGGFAIGIMKPDGSGERLLTEGFHNEGPTWAPNGQYLIFFRDPGGQAGG
                     KLHMVDITGRVDQPVPTPSYASDPTWGPLLSESRSN"
BASE COUNT          571 a         1222 c         1402 g          522 t
ORIGIN      
        1 ctgagcccgg ccgccggcca tgccgccgcc cagcggcgcg gacggctggg ccgtgccgag
       61 cggctgcggc gcgcccggcg cacccggcgc gtggctcggg tcgaaggcgt cgccgcgccg
      121 ttgcggacgc ggcggggacg acggcggcga cgacggcgtc tgcgacggac tcgccgacgg
      181 cgcgacgggc gggcgggcac cggggcggcc gtcctggaag cggaactcca cgtcctcctg
      241 gaacttgcga gcctgctcct tgagctggcg gttctcgaac tgcagctgct cgatctggcc
      301 ggccatctgt cggctctggt tctcgagccg gttcagccgg accaccaact ccgccgcatc
      361 ctgcgccgac gccggccccg caagggcgac aacggggaaa accgcgagaa cgaactggcg
      421 aatcatggcg aggccggtac tgaggaggcg cgaggccgct gtatcatcgg ctttgccatg
      481 gcgaaatggt ggcgcttcga gcacgcgcta cgagttcgcc ccggcgtcga gcaccgtgac
      541 ggcgcggcgg ttctgggacc agcacgagat gtcgttgcaa accgcgactg ggcgctcttt
      601 gccgtacgac accgtgcgga tccgggcggc cgagatgccg cgcgagctca gatagtcgcg
      661 caccgcctgg gcgcgacgcg cgcccagtga gaagttgtac tcgcgagttc cgcgctcgtc
      721 ggcgtgaccc tcgatgagga atgtgtagcg cggataacgc gaaagccact gcgcctgctt
      781 gtccagggtg gcgaccgccg tcggggtcag atcagtctgg tccgactcga agaacacgcg
      841 gtcgccgaca ctctgcgcga actcctgtgc gctgccgggc gtcgcgggac cgccccgccc
      901 gtagccgcca gcgccccccg agccgcccgc accgccggcg agctcatcgg tcttgcccga
      961 gcacgccgcc gccgcgagcg tcagcgccag cacggcggcg agccgcaggg cgcgcggcag
     1021 gagggcgttg gggagagaga cggtcatgga tcggtgctcc ttcgcgcacg cggggtgcgg
     1081 gtcatggaca tgggtaggcc gcggagggtt aagcgaaggt tccgtcaacc ttgacgaggc
     1141 gtttccgctg ccgtcccgaa agtcacgcgc gagcgaaagc tgcgcttatg gctaatgagt
     1201 cgtgaatgcg gcgcgccggt gacgcgcgcc cgcagcgggt gcacgaggcg gaaccgcgtg
     1261 ccgaacggtc gggttgacgc cacagagagg ccggcatcaa gcgcgccctc gtccaatcag
     1321 tgcatgggag gagccaaaca atggcagatc cgacgaggta ccgcggcgag cgcgggcgag
     1381 gatttggcga ggaccgctac ggaccgcgcg gccgcgacca gggcagcgat ggcggctaca
     1441 tcgcgcagcg tggattcggc aacgcccgct cgggttacgg cccggaggaa cgcgggcgcg
     1501 gcgaccacga ccgcggcggc agggccgagc gcagcggcgg tgattggggc tacccgcgcg
     1561 aggaccgcgg ccggtacggg gcccacggcg gaggcggtcg cgagcgcgac gaggaccggc
     1621 gggactacgg cgatgccgcg ggctacggcg gcggcggctc gtggcgcgac ttccgcgacg
     1681 tgaccggtcg cgactgggac gacgaccgct tccgcaaccc cgacgagttc ttccggggcc
     1741 ggccggaccg gggcgagcgg gatcgcggct accgcggcgg gaacgaatct ctcggcggct
     1801 tctacggcgc cgaccagggt cacggccgtg gaggccgcgg cgaagaccgc gacgagcgcg
     1861 gcttcctcga gcgggctggc gacgagatcg cgtcctggtt cggcgacgac gaggcggcgc
     1921 gccgccgtgc gcaggacgcc cgagaggagg gcggcgggta cggccaccgc ggccggggtc
     1981 cgcgcaacta ccgccgctcg gacgagcgta tccgcgagga cgtcagtgac cggctgatgg
     2041 acgacccgca tatagacgcc tccgacatcg aggttggcgt cgctaatggc gaggtggtgc
     2101 tcaccggaac ggtcgagaac cgtttcgcca aacgccacgc ggaggacttg gccgagagcg
     2161 tgtccggcgt cacgcacgtg cagaacaact tgcgcgtccg gcaagccggc ggcaccggcg
     2221 agggcctcac cggcaatgcc ggcgcaaccg cgagtgaggc ggcggtgagc aactcgggcg
     2281 gaaccattga ggagaccggc cgctctccgg gcgggcccgt caccggccgc cttggccaga
     2341 cctcgacgcc gcggcgtcgc cgcggcccgg tgatcgagta ggcgaggcct gatcgagtcc
     2401 tcgccgcttg cggcgaggag aggccgccgt cagttgctgc ggctctcgct cagcagcggg
     2461 ccccaggtcg gatcggacgc gtatgacggc gtcggcacgg gctggtcgac acggccggtg
     2521 atgtcgacca tgtgcaactt gccgcccgcc tgcccgccgg gatcgcgaaa gaagatcagg
     2581 tactgcccgt tcggcgccca cgtcgggccc tcgttgtgga acccctccgt gagcaggcgc
     2641 tcgcccgagc cgtcgggctt catgatgccg atggcgaagc ctccgttcgt ccgcttggtg
     2701 aaagcgatat agtcgccccg cggcgaccac gccggctgcg agtaggagcc ctgcccgaac
     2761 gagattcggc gcgggttgga gccgtccgcc cccatgacat agatctgctg ctgcccgccg
     2821 cggtccgact cgaatacgat ctcgcgcccg tccggcgaga acgacggtga agtatcgatg
     2881 gcattggtgg tggtgatgcg ggtggtggtg cgcgagccga gatccatgcc gtagatgttg
     2941 gcgttgccgc cctgctggag gctcatgacg atccgcccgc catcgggcga gaagcgcggg
     3001 ctcgaggtca tgtccgggaa gttgccgacc acctgacgcg ccccggtctc gaggttgatg
     3061 acctgcacgc gcggttgctg gcccgaggct tgggacatgt aggcgatgtc ctgcgtcgcg
     3121 ggggagtagc gcggcgtgac gacgaggttg tcgccttggg tgagatagcg gacgttcgcg
     3181 ccgtcctggt ccatgatggc gaggcgcttg cggcggttct cctttggtcc ggactcgtcg
     3241 acgaacacga cacgggtgtc gaagaagccc ccgaccccgg tgatcttggt gtagaccgcg
     3301 tccgagatga tgtggccgat gcggcgccag ttgttggggt ccgtaaagta ctgttgcccg
     3361 gcgacctgct gtcctgtggt gacgtcccat aggcggaact cggccttgag ccggcccgac
     3421 ggatcgcggg cgatgcggcc ggtgacgaga ccctgcacac ctgtcgcctt ccaggcgccg
     3481 aagtcgggtg cagcatcgaa gttcggggca gcgcccggaa agcgcccctt gtcgagcggg
     3541 atgaagtagc ccgaacgctt gaggttgttg gcgatgatgc cgccgacctg cggcccgagg
     3601 ctcggctcgc cgccgaagtc cgcgacggcg atcgggatgg gctggaacgc cccgcggcgc
     3661 acgtcgatga caagctcagc ccgcgctgcc gtggtgactg caaggagagc cgccaag
//
LOCUS       DASQWN010000426         3017 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_929333, whole genome shotgun sequence.
ACCESSION   DASQWN010000426 DASQWN010000000
VERSION     DASQWN010000426.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 3017)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3017)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3017
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_929333"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..142
                     /locus_tag="VE686_08045"
     CDS             <1..142
                     /locus_tag="VE686_08045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012319723.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="iron-sulfur cluster assembly accessory protein"
                     /protein_id="HYY84436.1"
                     /translation="VLVDQVSLQYMDGSVIDFVDDLIGQSFKIENPHAVASCGCGTSF
                     SL"
     gene            252..2120
                     /locus_tag="VE686_08050"
     CDS             252..2120
                     /locus_tag="VE686_08050"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY84437.1"
                     /translation="MSRRVRYSCLAAVSGAAVLAAGVSTPTLHAVSVSLGDGTRLEIG
                     TVRGGASFIGMALAQSAETVTLENVTLDLGHLSYKAPRIEFSGVSLSRAELAAFFDLT
                     VTEPLATRLARLSAREIVAPEVITEQKGGPNRSVARYRNVVARDVVQGRMASLTSDGA
                     SIEAEVPDGKTTGSLGRITARDLDLAEAARLYSSKAGATPPEMKRIYGAFSMENLLVT
                     GPKGFEGRIARIAGRDFMARPTKDSWAETVKAMGTTDTSDKASPEEKSRAMNVMVDLL
                     SAFQIGSMEATGFDFRDPSGKDKANGRIARMAYTGATGGQPAEARMEGLDFDGDDGKV
                     RIANLSFTGFSLESTLEGLRSLAGKPIEKLDPAEARKLMPTIGTMRFSGVDADVPDTE
                     SKEKGPNLRFTVREIEVTADKPLNGVPTNLRFGLDGVAFSVPPGAKQDGLRELSELGY
                     TKVDISSTVAASWNEAGKEIVLREVSMRGSDMGAVTLRGTLGNITKDVFNPDSTVAMV
                     SLIGATAKTVELTVENKGLFEKVMAQQAQQKKKSPDDLRREYGMAAAVGIPALLGNGA
                     SAKTLGQAVARFITKPGRLAISAKTKDGGGLGLGDFASIGEPATILEKLEITASSE"
     gene            complement(2127..>3017)
                     /locus_tag="VE686_08055"
     CDS             complement(2127..>3017)
                     /locus_tag="VE686_08055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012317505.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016746 - acyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate acyltransferase"
                     /protein_id="HYY84438.1"
                     /translation="EEGIAKPILIGRPNVVEARMKRFGLSMAIGREFELVNPEDDPRY
                     RDYVATYVEAAGRKGITPDAAKTLVRTNTTVIGAIAVHRGDADALICGLEGRFQSRLK
                     HIKDIIGLAPGASELAAMSLVITGKGAYFLADTHVRPDPTAEEIADMTVSCASHVRRF
                     GIAPRVALLSHSDFGASDTPSACKMRDALAIIRARAPELEVDGEMAADTALSELIRER
                     VYPGSALKGEANILIMPNLDAANIAFQLTKVLADALPVGPILIGPAKPVHILTPSVTA
                     RGIVNLTAVAVVEAQAAEAR"
BASE COUNT          496 a         1022 c         1041 g          458 t
ORIGIN      
        1 cgtgctcgtc gaccaggtgt ccctgcagta catggacggc tcggtgatcg acttcgtcga
       61 cgacctcatc ggtcagtcgt tcaagatcga gaacccccac gcggtcgctt cctgcggctg
      121 cgggacgagc ttctccctgt agcgacgcgg ccctccgccg gtcacgggga ggtgaagccg
      181 agcctgtgca actcgcctct ggatggcgta agctggcgca agcttccggg gggacttcca
      241 tgaaccgagc cttgtcgcgg cgcgtccgct attcctgcct tgcggccgtg tcgggcgccg
      301 ccgtccttgc agccggcgtt tccaccccga cactgcatgc cgtgtccgtc tcgcttggcg
      361 acggcacgcg gctcgagatc ggcacggtcc gcggcggcgc aagcttcatc gggatggcac
      421 tcgcccagag cgccgagacc gtgaccctcg agaacgtcac gctcgacctc ggccacctca
      481 gctacaaggc tcccaggatc gagttctcgg gcgtcagcct cagccgggcc gagcttgccg
      541 ccttcttcga tctcaccgtg acggagccgc ttgccaccag gctcgcccgg ctctcggcga
      601 gggagatcgt cgcgccggag gtcatcaccg agcagaaggg cggccccaac cgcagcgtcg
      661 cgcgctaccg caacgtggtt gcgcgcgatg tcgtacaggg ccgcatggcc tcgctcacct
      721 cggacggagc ctcgatcgag gcggaggtcc cggacggcaa gacgacgggg agccttggac
      781 ggatcacggc ccgcgatctc gatcttgccg aggcggcgcg tctctacagc agcaaggccg
      841 gggcaacgcc ccctgagatg aagcgcatct acggcgcgtt ctcgatggag aacctgctgg
      901 tcacgggtcc caagggcttc gaggggcgga tcgcccgcat cgccggacga gatttcatgg
      961 cccggccgac gaaggactcc tgggccgaga ccgtgaaggc catgggcacc accgacacct
     1021 ccgacaaggc ctcgccggag gagaagtcgc gggccatgaa cgtcatggtg gacctgcttt
     1081 ccgcgttcca gatcgggtcg atggaggcca ccgggttcga cttccgcgac ccgagcggca
     1141 aggacaaggc gaacggacgc atcgcacgca tggcctacac gggcgcgacg ggcgggcaac
     1201 cggccgaggc gcgcatggag ggtctcgatt tcgacggcga cgacggcaag gtgcgcatcg
     1261 ccaacctgtc gttcacgggc ttctcgctcg aatcgacgct cgagggcctg aggagcctcg
     1321 ccgggaagcc gatcgagaag ctcgatccgg ccgaggcccg caagctgatg ccgaccatcg
     1381 gtacgatgcg cttctcagga gtcgacgcgg acgtgcccga caccgaaagc aaggagaagg
     1441 gaccgaacct gcgcttcacg gtccgcgaga tcgaggtcac ggccgacaag ccgctcaacg
     1501 gcgtgccgac gaacttgcgc ttcggcctcg atggcgtcgc cttctcggtg ccgcccggtg
     1561 ccaagcagga cggcctgcgc gagctctccg aactcggata caccaaggtc gacatctcga
     1621 gcaccgtcgc ggcgagctgg aacgaggccg gcaaggagat cgtgctgcgc gaggtctcca
     1681 tgcgcggcag cgacatgggc gcggtcacgc tccgcggcac ccttggcaac atcaccaagg
     1741 acgtgttcaa ccccgacagc accgtcgcca tggtctccct catcggtgcc acggcgaaga
     1801 cggtcgaact caccgtggag aacaagggcc tgttcgagaa ggtgatggcc cagcaggcgc
     1861 agcagaagaa gaagtccccc gacgacttgc ggcgtgagta cggcatggcc gccgctgtcg
     1921 gcatcccggc gcttctcggc aacggcgcct cggcgaagac cctcggtcag gcggtcgcgc
     1981 gcttcatcac caagccgggc cggctcgcca tctcggcgaa gaccaaggac ggcggcgggc
     2041 tcgggctcgg ggacttcgcc tcgatcggtg agcccgccac gatcctcgag aagctcgaga
     2101 tcacggcgag ctccgaatag ggcccgtcag cgcgcctcgg ccgcctgggc ctcgaccacc
     2161 gcgacagccg tcaggttcac gatgcctcgc gccgtcaccg acggcgtgag gatgtggacg
     2221 ggctttgccg ggccgatcag gatcggcccc acgggtagcg catccgcaag caccttggtg
     2281 agctggaagg cgatgttggc cgcatcgagg ttcggcatga tgaggatgtt cgcctcgccc
     2341 ttgagggccg agcccgggta gacccgctcg cggatcagct ccgagagcgc cgtgtcggcc
     2401 gccatctcgc cgtcgacctc gagctcgggc gcgcgggccc ggatgatcgc cagggcgtcg
     2461 cgcatcttgc acgcggacgg ggtgtcggac gcgccgaagt ccgagtggga aaggagcgcg
     2521 acgcgcggcg cgatgccgaa gcgacgcacg tggctcgcgc acgagaccgt catgtcggcg
     2581 atctcctccg cggtcgggtc cggccgcacg tgggtgtcgg cgaggaagta ggcgcctttg
     2641 ccggtgatga cgagggacat ggcggcgagt tcgctcgcgc cgggggccaa gccgatgatg
     2701 tccttgatgt gcttgaggcg cgactggaag cgcccttcga ggccgcagat cagggcgtcc
     2761 gcgtcccccc ggtgcaccgc gatggcgccg atcaccgtcg tgttggtgcg gaccagggtc
     2821 ttggcggcat ccggcgtgat gcccttgcgg cccgcggcct ccacataggt ggctacgtag
     2881 tcgcggtagc gcggatcgtc ctccgggttc accagctcga actcgcggcc gatcgccatg
     2941 gacaggccga agcgcttcat gcgcgcctcc accacgttgg gacgcccgat caggatcggc
     3001 ttggcgatgc cttcctc
//
LOCUS       DASQWN010000427         3298 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_769257, whole genome shotgun sequence.
ACCESSION   DASQWN010000427 DASQWN010000000
VERSION     DASQWN010000427.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 3298)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3298)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3298
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_769257"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(32..1222)
                     /locus_tag="VE686_08060"
     CDS             complement(32..1222)
                     /locus_tag="VE686_08060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012331703.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lytic murein transglycosylase"
                     /protein_id="HYY84439.1"
                     /translation="MLRLKLACLALVAFAAVMGAPTGAAASPAFQAFVEGLWPEAQAR
                     GVSRATFDSAFRGVAPDPKIAGTTAKQSEFVRPVWHYIAGATAPGTVAKGQAAARQWA
                     PVLAGVERTYGVPAPIVLALWGLESGYGASTGGVYTIRALATLAFAGNRRELFRNELL
                     AALQILEQDHIEREAMLGSWAGAMGQTQFMPSSYLKFAVDGDGDGRRDIWTSVPDALA
                     STANFMRENGWDPSLPWGFEVVLPEGFDWRTVSAGFPQWASLGVRRADGRAIPPRGDA
                     ALFLPAGAKGPALLITANFEVIRAYNTSDAYALGVGFLSDRIAGSGPLRASWPVNDPI
                     LTLAERAEAQKRLAALGLYDGATDGKVGPRSRDSVRRFQLARGLAADGYMGPAVLQAL
                     REAP"
     gene            complement(1298..2287)
                     /gene="galE"
                     /locus_tag="VE686_08065"
     CDS             complement(1298..2287)
                     /gene="galE"
                     /locus_tag="VE686_08065"
                     /EC_number="5.1.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020091419.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003978 - UDP-glucose 4-epimerase activity
                     [Evidence IEA];
                     GO_process: GO:0006012 - galactose metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-glucose 4-epimerase GalE"
                     /protein_id="HYY84440.1"
                     /translation="MAVLVTGGAGYIGSHMVLALLDAGEEVVVLDNLSTGFDWALPPE
                     AKLVVGDMGDQELVGRVIGEHGVKAIAHFAAKIVVPESVADPLGYYLNNTVKSRALIE
                     AAIRGGVEHFIFSSTAAVYGDVDTKPVGEDRPLNPMSPYGRSKLMTEWMLADAAAAHG
                     LRYVILRYFNVAGADPHGRSGQSTANATHLIKVAAQTALGQRKHIEIYGNDYPTPDGS
                     CLRDYIQVSDLAAAHLDALTHLRRGGESLTLNCGYGTGYSVFEVIEVVRRVSGVNFDV
                     RLSPRRAGDPAAIVAKADRIRERLGWQPRYDDLTTIVDQALRWEKALLTRNQI"
     gene            2462..>3298
                     /locus_tag="VE686_08070"
     CDS             2462..>3298
                     /locus_tag="VE686_08070"
                     /EC_number="2.7.7.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012753286.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003983 - UTP:glucose-1-phosphate
                     uridylyltransferase activity [Evidence IEA];
                     GO_process: GO:0009225 - nucleotide-sugar metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UTP--glucose-1-phosphate uridylyltransferase"
                     /protein_id="HYY84441.1"
                     /translation="MKRIRKAVLPVAGLGTRFLPATKAVPKEMLTVVDRPVVQHVVDD
                     ARAAGIEHFVFVTGRGKAIIEDHFDIAYELDRTLQERGKVKEFEALASDLPKAGQTSF
                     TRQQAPLGLGHAVWCAREIVGDEPFAVLLPDMLSPGAVAQMLAAYEKHGGNIIAVEEV
                     PEDQTHQYGIVAVGETFGDTFEITGMVEKPPRGTAPSNLIISGRYILQPEIFEVLSDQ
                     EKGAGGEIQLTDAMAALIGTQPFHGVTFDGARHDCGDAKGFVVANLALGLARDDLAPA
                     IRA"
BASE COUNT          493 a         1173 c         1166 g          466 t
ORIGIN      
        1 ttgtccaata tagggcattg cgggcccggc gtcagggcgc ctcccgaagt gcctgcagga
       61 cggcagggcc catgtagccg tcggcggcga gcccgcgggc gagctggaac cgccgcacgg
      121 agtcgcgcga cctcggaccg accttgccgt ccgtggcgcc gtcgtagagc ccgagcgcgg
      181 cgagccgctt ctgcgcctcg gcccgctcgg cgagggtcag gatcgggtcg ttcaccggcc
      241 acgaggcgcg caacgggcct gagccggcga tgcggtcgga caggaacccg accccgagcg
      301 cgtacgcgtc cgacgtgttg taggcccgga tcacctcgaa gttcgcggtg atgaggagcg
      361 ccggcccctt cgcgccggca ggcaggaaca gcgctgcatc gccgcggggc gggatggcgc
      421 ggccgtccgc ccggcgcacg ccgaggctcg cccattgcgg aaagcccgcc gacacggtgc
      481 gccagtcgaa gccctccggc aggacgactt cgaagcccca gggcaggctc ggatcccagc
      541 cgttctcgcg catgaagttc gccgtcgagg cgagcgcgtc cggcaccgag gtccagatgt
      601 cgcgccggcc gtcgccgtcg ccgtcgacgg cgaatttcag gtagctcgac ggcatgaact
      661 gcgtctgccc catggcgccc gcccaggagc cgagcatcgc ctcgcgctcg atgtggtcct
      721 gctcgaggat ctgcagggcg gcgaggagct cgtttcggaa cagctcgcgg cggttgcccg
      781 caaaggccag cgtcgcaagc gcccggatcg tgtagacgcc gcccgtggag gcgccgtagc
      841 cgctctcgag gccccaaagc gcaaggacga tgggggccgg cacgccgtag gtgcgctcga
      901 cgccggcgag cacgggcgcc cactggcgcg cggccgcctg gcccttcgcc acggttccgg
      961 gcgccgtcgc tccggcgatg tagtgccaca cggggcggac gaactcggac tgcttggccg
     1021 tcgtcccggc gatcttcgga tcgggcgcga cgccgcggaa ggcgctgtcg aacgtcgccc
     1081 gcgagacccc gcgcgcctgc gcctccggcc acagcccctc gacgaaggcc tggaacgccg
     1141 gcgaggcggc ggcgccggtt ggcgccccca tgacagcagc gaaggcgaca agcgcaaggc
     1201 aggcaagctt caggcggagc atccgggccc ttgttcggcg aaggcggccc tggtggcccg
     1261 gcaaagcggc gcgagtgtgg tgccgcgcgg tctcgcgtca gatctggttg cgggtgagga
     1321 gggccttttc ccagcgcagg gcctggtcga cgatggtggt gaggtcgtcg tagcgcggct
     1381 gccagccgag gcgctcgcgg atgcgatccg ccttggcgac gatggcggcg ggatcgccgg
     1441 cccggcgcgg cgacaggcgc acgtcgaagt tgacgcccga gacgcgcctc accacctcga
     1501 tgacctcgaa caccgagtac ccggtgccgt agccgcagtt gagcgtcagg ctctcgccgc
     1561 cccggcgcag gtgcgtcagc gcgtcgaggt gggcggccgc gaggtccgag acctggatgt
     1621 agtcgcgcag gcacgagccg tcgggcgtcg ggtagtcgtt gccgtagatc tcgatgtgct
     1681 tgcgctggcc gagcgccgtc tgggccgcga ccttgatgag atgggtcgcg ttcgcggtcg
     1741 actggccgga gcgcccatgc gggtcggcgc cggcgacgtt gaagtagcgc aggatcacgt
     1801 agcgcaggcc gtgcgccgcg gcggcgtcgg cgagcatcca ctccgtcatc agcttggagc
     1861 gcccgtacgg cgacatcggg ttgagcggcc ggtcctcgcc cacgggcttg gtatcgacgt
     1921 cgccgtagac ggccgcggtc gacgagaaga tgaagtgctc gaccccgccc ctgatggccg
     1981 cctcgatgag ggcgcgcgat ttgacggtgt tgttgaggta gtagccgagc gggtcggcga
     2041 cggactccgg gaccacgatc ttggcggcaa aatgcgcgat cgccttgacg ccatgctcgc
     2101 cgatgacgcg gccgacgagt tcctggtcgc ccatgtcgcc gacgacgagc ttcgcctcgg
     2161 gcggcagggc ccagtcgaag ccggtcgaca ggttgtcgag gacgacgacc tcctcgccgg
     2221 cgtcgaggag agccaaaacc atgtggctgc cgatgtaccc ggcgccgccc gtcaccaaga
     2281 ccgccatgtc cagaccaccc tccgcgtgca cgcctgtggt accgggaaac gcttcagctt
     2341 cgtttaacgg cgtcgcggcc aagcgtcgct tgacgccgcc gcaacgccgt tgtcactgcg
     2401 ccgttgtcgc aaagccggcc cgccggcgcc cgaacgctcg ttccccgcac atggctcctc
     2461 gatgaagcgc atccgcaaag ccgtccttcc cgtcgccggc ctcggcaccc ggttccttcc
     2521 ggccaccaag gccgtgccga aggagatgct gaccgtcgtc gaccggcccg tcgtgcagca
     2581 cgtggtcgac gacgcgcgcg ccgccggcat cgagcacttc gtgttcgtca ccggccgcgg
     2641 caaggccatc atcgaggacc atttcgacat cgcctacgag ctcgaccgca ccctgcagga
     2701 gcgcggcaag gtcaaggagt tcgaggccct cgcgagcgac ctgcccaagg ccggccagac
     2761 gagctttacg cgccagcagg cgccgctcgg gctcggccac gccgtgtggt gcgcgcgcga
     2821 gatcgtcggc gacgagcctt tcgcggtgct gctgccggac atgctgagcc ccggcgccgt
     2881 ggcccagatg ctcgccgcct atgagaagca cggcggcaac atcatcgccg tcgaggaggt
     2941 cccggaggac cagacgcacc agtacggcat cgtcgcggtc ggcgagacct tcggcgacac
     3001 cttcgagatc accggcatgg tcgagaagcc gccgcgcggc accgcgccct ccaacctcat
     3061 catctcgggg cgctacatcc tgcagcccga gatcttcgag gtcctctccg accaggaaaa
     3121 gggcgccggc ggcgagatcc agctcaccga cgcgatggcc gctctgatcg gcacccagcc
     3181 cttccacggc gtcaccttcg acggcgcgcg ccacgattgc ggcgacgcca aaggcttcgt
     3241 cgtcgccaat ctcgctctgg gcctcgcccg tgacgacctc gcccccgcaa tccgcgcc
//
LOCUS       DASQWN010000428         2003 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1164479, whole genome shotgun sequence.
ACCESSION   DASQWN010000428 DASQWN010000000
VERSION     DASQWN010000428.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2003)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2003)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2003
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1164479"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..360)
                     /locus_tag="VE686_08075"
     CDS             complement(<1..360)
                     /locus_tag="VE686_08075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019403393.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016616 - oxidoreductase activity, acting
                     on the CH-OH group of donors, NAD or NADP as acceptor
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="isocitrate/isopropylmalate family dehydrogenase"
                     /protein_id="HYY84442.1"
                     /translation="MRTDNRLRIAVMPGDGIGVEVMDVALAVLDAVEDRHGIGVDKVQ
                     VPGGALHYRDTGTPLDEAGFVEAERADAVLFGAMGWPEVRYPDGTEIAPQLDLRVRLD
                     LYAGVRPIRAIPGVRPTL"
     gene            451..1449
                     /locus_tag="VE686_08080"
     CDS             451..1449
                     /locus_tag="VE686_08080"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HYY84443.1"
                     /translation="MISRFGRLAVLLALMLAAPRAYAEANTVRIAKQYGLGYIQFMIM
                     EDQKLVEKHAKAAGLGEVQATWGTFRSSDVMNDALISANLDFACLGPPGLATIWSRTR
                     GNIDVRAAAGLNALPLILTTREPSIKSIRDFKESHKIAVPAAKVSIQAILIQMAAARE
                     WGDAQFQKLDSLTMSLAHPDATAMMLGGGTEVIANFSSAPFQYRQLKQPGIHKVLSSD
                     EITGGAYSFNVIASTGKFRNENPKLYNAFLSALQEATDFVNKDKDAAADIYLRVSGDK
                     TPKAELLEIMAQPEIKFTTEVVNLGIFTDFMAKVGTLKNPPKDWKTEMVFPEAKVR"
     gene            complement(1483..1737)
                     /locus_tag="VE686_08085"
     CDS             complement(1483..1737)
                     /locus_tag="VE686_08085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016919839.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SemiSWEET transporter"
                     /protein_id="HYY84444.1"
                     /translation="MALLDYTGYAAAACTTSAYIPQVLRVWRTRSTTDISLKMFLVLV
                     TGLSLWLTYGIWRGEWPLIIANSITLMLASTILYFKIRHG"
     gene            complement(1806..>2003)
                     /locus_tag="VE686_08090"
     CDS             complement(1806..>2003)
                     /locus_tag="VE686_08090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014890461.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MgtC/SapB family protein"
                     /protein_id="HYY84445.1"
                     /translation="ILRHKDSVKGTATAASLWVTGAIGTAVGLGSYDVAIAVALFTIV
                     TLQFLPPLKSLAGDDATARKD"
BASE COUNT          367 a          679 c          650 g          307 t
ORIGIN      
        1 gagcgtcggg cgcacgcccg ggatggcccg gatcgggcgc acgccggcgt agaggtcgag
       61 ccggacccgg aggtcgagct gcggcgcgat ctcggtgccg tcagggtagc gcacctccgg
      121 ccagcccatc gcgccgaaca gcaccgcatc ggcgcgctcg gcctcgacga agccggcctc
      181 gtctagcggc gtgccggtat cgcggtagtg cagggccccg cccggcacct gcaccttgtc
      241 gacgccgatc ccgtgccggt cctcgaccgc gtccaggacg gccagcgcca cgtccatgac
      301 ctcgaccccg atgccgtcac cgggcatgac ggcaatgcgg agacggttgt cggttctcat
      361 gggcgttgtc cgaaagcgag ttgagcgata ggtcaacgcc gcctacagtc ccgcccgtcg
      421 acaagcaatg acaaaccgag gaaacgcgtg atgatctcca ggttcggccg ccttgcggtc
      481 cttctcgcgc tcatgctggc ggcgccccgc gcctacgcgg aagccaacac cgtccgcatc
      541 gcgaagcagt atgggcttgg ctacatccag ttcatgatca tggaggacca gaagctcgtc
      601 gagaagcacg ccaaggcggc ggggctcggc gaggtccagg ctacctgggg cacgttccgc
      661 tcgagcgacg tgatgaacga cgcgctcatc tcggcgaacc tcgacttcgc ctgcctcggc
      721 cctcccggcc tcgcgacgat ctggtcgcgc acccggggca acatcgacgt gcgcgccgca
      781 gctggcttga acgcgctgcc gctgatcctc acgacgcgcg agcccagcat caagtccatc
      841 cgcgacttca aggagagcca caagatcgcc gtccctgccg ccaaggtctc gatccaggcg
      901 atcctcatcc agatggcggc agcgcgcgaa tggggcgatg cgcagttcca gaagctcgat
      961 tcgctcacca tgtcgctcgc gcatccggac gcgacggcga tgatgctcgg cggcggcacg
     1021 gaggtgatcg cgaacttctc gtcggcgccg ttccagtatc ggcagctgaa gcagcccggg
     1081 atccacaagg tcctctcgtc ggacgagatc accggcggcg cctactcgtt caacgtgatc
     1141 gcctcgacgg gcaagttccg caacgagaac ccgaagctct acaacgcctt cctgtccgcg
     1201 ctgcaggagg cgaccgactt cgtgaacaag gacaaggacg ccgccgccga catctacctg
     1261 cgggtcagcg gcgacaagac gcccaaagcc gagctcctcg agatcatggc gcagcccgag
     1321 atcaagttca ccaccgaggt cgtgaacctc ggcatcttca ccgacttcat ggccaaggtc
     1381 ggcaccctga agaacccgcc caaggactgg aagaccgaga tggtcttccc cgaggcaaag
     1441 gtgcgctgag cgctttgcga cgcggcggct tcggtcgccg cgtcagccgt gccggatctt
     1501 gaaatagagg atggtgctcg cgagcatgag agtgatgctg ttggcgatga tgagcggcca
     1561 ctcgcccctc cagatgccgt acgtgagcca cagcgacagc cccgtgacga gcaccaggaa
     1621 catcttgagc gagatgtcgg tcgtcgagcg cgtccgccac accctgagca cctgcggaat
     1681 ataggcgctg gtggtgcacg cggcggcggc gtagccggtg tagtcgagaa gagccattcg
     1741 cggtcctcgc caagagcgcc atgaacgctg gcgcgaactg cgagttcccg catggcgaag
     1801 cggcgctaat ccttgcgcgc ggtcgcatcg tcgccggcga gcgatttcag cggcggcaag
     1861 aactgcagcg tgacgatcgt gaacagggcg actgcgatcg cgacgtcgta gctgcccagg
     1921 ccgactgccg tgccgatcgc accggtgacc cagaggctcg cggccgtcgc ggtacccttg
     1981 accgagtcct tgtgccgaag gat
//
LOCUS       DASQWN010000429         3623 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_75418, whole genome shotgun sequence.
ACCESSION   DASQWN010000429 DASQWN010000000
VERSION     DASQWN010000429.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 3623)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3623)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3623
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_75418"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(160..585)
                     /locus_tag="VE686_08095"
     CDS             complement(160..585)
                     /locus_tag="VE686_08095"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY84446.1"
                     /translation="MERPRIYSRTEERIPGEDLESRLEALRVVAGGLSTSEMKATSRD
                     DELRRETLDLLTRANQRVLAADERAVQLEADHRQREADLAAQIQELETRLQMSEDANA
                     RLEAAKAAAEDRAARAEERSEATNQFLARVNDSLRDLAR"
     gene            769..1464
                     /locus_tag="VE686_08100"
     CDS             769..1464
                     /locus_tag="VE686_08100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008836515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HYY84447.1"
                     /translation="MEDIGQAFALAARLVASGDGELMGIVLLSLRVSLTATALAFVLG
                     APLGAALATASFPGRQAVVVAVNALLGLPPVVVGLLVYVTLSRAGALGSLGLLFTPAA
                     MIVAQTLLALPIVVALTHRTAAATWADYGDALTVDGASRIRTLRELLAMGRSGLVTVF
                     LAAFGRAIAEVGAILMVGGNIRGETRTMTTAIALETTKGELALALALGLILLGLSLAV
                     SAAAFALERWSAR"
     gene            1545..2321
                     /locus_tag="VE686_08105"
     CDS             1545..2321
                     /locus_tag="VE686_08105"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY84448.1"
                     /translation="MQTMLRLVAAAAFAFVTGAAVAAMDPAKVAAAKKAGDEFIALAA
                     GSDKSGQVPRQADPKVKALLDTVFDRTALGPTVLPINESGKVGELLNNGNRIGFVYML
                     AGTGLSDLGKLGEDQKAMDQAERNIGAFAPEIGRWFDYQMAIQGAVADSTIGFLATAK
                     KNVMDNPQVKAGLADVRGGLTGAMRGVLQMMASDTLDDGWRRDRLVGLGELAPRAAKL
                     LSAEQAASLKESATQLAAAINDPGLKASLATFAETVARGA"
     gene            2367..3320
                     /locus_tag="VE686_08110"
     CDS             2367..3320
                     /locus_tag="VE686_08110"
                     /inference="COORDINATES: protein motif:HMM:NF015995.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0043190 - ATP-binding cassette (ABC)
                     transporter complex [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycine betaine ABC transporter
                     substrate-binding protein"
                     /protein_id="HYY84449.1"
                     /translation="MTAVERPDRAGPARRRCLAAALAVATAFLLAATTVAPRAAAQSL
                     VLGAKDFTEQLLVAEMTTQLLRAKGFTVHVGAGFTTGGVRRAHEAGVVDVYWEYTGTS
                     LTAFHGIRDKLAPEEAFARVKQLDAQKGLVWLRPSRVNNTYGLAMRRADAAKRGIASI
                     SDLAAKARGGERFTLATNGEFLVRPDGLGPLQRAYGFAFEPDAVTTMATGTVYDVLRR
                     SSSFDVGVVFATDGRVPAFDLVLLQDDRDFFPSYLLAPVVRRTTLDRHPELAPLLEAL
                     SARLDDATMANLNALVDVHKRGIDDVAAEFMRSTGLLTPQP"
     gene            3373..3540
                     /locus_tag="VE686_08115"
     CDS             3373..3540
                     /locus_tag="VE686_08115"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY84450.1"
                     /translation="MRTEYFVLPILVVVLGAVAVWALVLPTEPQLAAAESAFAGMLAT
                     GVALVTGRLPR"
BASE COUNT          499 a         1273 c         1251 g          600 t
ORIGIN      
        1 gggctcgcgc ccgacacgag ggccgcggcc ggggaggtca tgtatccggg cgattgggat
       61 acgctagcgg ccgacgagcg cgccgaatac taccgccgcc gctgatcggg ggggagccgg
      121 cgtggccgcc ggcctcttcg aagggttcag cttgcccgct tagcgggcga ggtcgcgcag
      181 gctgtcgttg acccgggcca ggaactggtt cgtcgcttcc gacctctcct cggcgcgggc
      241 ggcgcgatcc tcggcggcgg ccttggcggc ctcgaggcgg gcgttcgcgt cctcggacat
      301 ctgcagccgg gtctcgagct cctggatctg tgcggcgaga tccgcctcgc gctgccggtg
      361 gtcggcctcg agctggacgg cgcgctcgtc ggcggcgagg accctttggt tggcccgcgt
      421 cagcaggtcc agggtttcgc gacgcagctc atcgtccctg ctcgtcgcct tcatctcgga
      481 tgtggacagt ccaccggcga cgacccgaag cgcttccagc ctcgattcca agtcttcacc
      541 tgggatacgt tcttccgtgc ggctgtagat gcgcggccgt tccatgctcg ccgtcccctg
      601 ttgcctctct acactgtcgt tgccatccta agtgtcgtca atcgaggcgt taccaagtgg
      661 ttaagcgaca tggtaaacgt ccgcttaacc gagctgcctt gcgggcaggc tgcgaaatcg
      721 agctgcagcc ggttggcgcc gggccgccgc cgccgctaag cagggagcat ggaggatatc
      781 ggtcaggcgt tcgccctcgc ggcccggctc gtcgcgagcg gcgacggcga gctcatgggg
      841 atcgtgcttc tgtccctgcg ggtgagcctc accgcgactg cgctcgcctt cgtgcttggt
      901 gcgccgctgg gcgccgcgct cgccaccgcg agctttccgg gccgccaggc cgtcgtggtc
      961 gccgtcaacg cgctcctcgg ccttccgccc gtcgtcgtcg ggcttctggt ctatgtcacg
     1021 ctctcgcgcg ccggggcgct gggcagcctc ggccttctgt tcaccccggc ggcgatgatc
     1081 gtcgcccaga cgctgctggc gctaccgata gtcgtcgccc tgacgcaccg gaccgccgcc
     1141 gccacctggg ccgactacgg cgatgcgctg acggtcgacg gcgcctcgcg catccggacc
     1201 ttgcgcgagc tcctggccat ggggcgcagc gggctggtga ccgtgttcct cgccgccttc
     1261 gggcgagcga ttgcggaagt cggcgccatc ctgatggtcg gcggcaacat ccgcggcgag
     1321 acgcgcacca tgacgacggc catcgcgctc gagaccacca agggcgagct cgccctcgcg
     1381 cttgcgctcg gcctcatcct cctcggcttg agcctcgccg tcagcgccgc cgccttcgcg
     1441 ctcgagcgct ggagcgcgcg ctagggttcc tcagggtccg catgcctcgt atcactcgcg
     1501 atggtcatgt agagtcgggt cctcacgttc gaggatgctt tgccatgcag acaatgttgc
     1561 ggctcgttgc ggcggctgcc tttgcgttcg tcaccggggc cgccgtcgcg gccatggacc
     1621 cggccaaggt cgccgccgcc aagaaggccg gggacgagtt catcgcgctc gcggcagggt
     1681 cggacaagtc gggccaggtg ccgcgccagg cagatccgaa ggtcaaggcg cttctcgaca
     1741 ccgtgttcga ccgcacggcg ctcggcccca cggtcctgcc gatcaacgaa agcggcaagg
     1801 tcggcgagct cctcaacaac ggcaaccgca tcggcttcgt ctacatgctg gccggcaccg
     1861 gcctgtccga cctcggcaag ctcggcgagg accagaaggc gatggaccag gccgagcgca
     1921 acatcggcgc cttcgcgccc gagatcggcc gctggttcga ctaccagatg gcgatccagg
     1981 gcgcggtcgc ggactcgact atcgggttcc tggccaccgc caagaagaac gtcatggaca
     2041 atccgcaggt caaggccggc ctggcggacg tgcgcggcgg cctcacgggg gccatgcgcg
     2101 gcgtgctgca gatgatggcc agcgacaccc tcgacgacgg ctggcgccgg gaccggctcg
     2161 tgggcctcgg cgagcttgcg ccgcgagccg cgaagctcct gtcggcagag caggcggcct
     2221 cgctcaagga aagcgccacg cagcttgccg ccgcgatcaa cgatccgggt ctcaaggcga
     2281 gcctcgcgac attcgccgag accgtcgcac ggggggcatg agggccggca ccgccggcgg
     2341 atgacctggg atctgggacg cgagcattga cggccgttga acgacccgac cgcgccggcc
     2401 ccgcgcggcg ccgctgcctc gccgccgctc tcgccgtcgc gacggcattc ctcctcgcgg
     2461 cgacgacggt tgcgccgcgt gccgcggccc aaagcctcgt gctcggggcc aaggacttca
     2521 ccgagcagct gctcgtcgcc gagatgacga cgcagctgtt gcgcgccaag ggcttcacgg
     2581 ttcacgtcgg cgcgggcttc acgaccgggg gcgtccggcg ggcgcacgag gccggcgtcg
     2641 tcgacgtgta ttgggagtac acgggaacct cgctcaccgc cttccatggc atccgcgaca
     2701 agctcgctcc tgaggaggct tttgcgcgcg tgaagcagct cgacgcgcag aaggggctgg
     2761 tgtggctgcg gccgtcgagg gtgaacaata cctacgggct cgcgatgcgc cgggccgacg
     2821 ccgcgaagag ggggattgcg agcatttcgg atctcgccgc caaggcccgc ggcggcgagc
     2881 gcttcacgct ggcgaccaac ggcgaattcc tggtccggcc cgacggcctc ggcccgctgc
     2941 agcgggccta tggcttcgcg ttcgagcccg atgccgtcac caccatggcg accggtacgg
     3001 tgtacgacgt gctgcggcga tcgagcagct tcgacgtcgg cgtcgtgttc gcgacggatg
     3061 gtcgtgtccc ggccttcgac ctggtcctgt tgcaggacga ccgggacttt ttcccgagct
     3121 acctcctggc gcccgtggtc cggcgcacca cgctcgatcg ccaccccgag ctcgcgccct
     3181 tgctggaggc tctatcggca cgcctcgacg atgcaacgat ggcgaatctc aacgccttgg
     3241 tcgatgtgca caagcgcggg atcgacgacg tcgcggcgga gttcatgcgc agcaccggcc
     3301 tgctcacgcc ccagccttga cccaggcgcg attcgtccgt tttgatcgca cgagtgctgg
     3361 agagaatctg ggatgcgcac ggagtacttc gtcctgccta ttctcgtggt cgtgctcggc
     3421 gcggtcgccg tctgggccct cgtgctgccc accgaacctc agctcgccgc cgccgaaagc
     3481 gcctttgcgg gaatgctggc gacgggcgtc gccctcgtga ccggccgcct gccgcgctaa
     3541 gcgcccacac cgcaggcgcc gtgggaaagc tggaggcgcc gaacgagcgg cggcttgact
     3601 ccagtcgccc gttgcgaaca aac
//
LOCUS       DASQWN010000430         4051 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_432555, whole genome shotgun sequence.
ACCESSION   DASQWN010000430 DASQWN010000000
VERSION     DASQWN010000430.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 4051)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4051)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4051
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_432555"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..431)
                     /locus_tag="VE686_08120"
     CDS             complement(<1..431)
                     /locus_tag="VE686_08120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009756455.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HYY84451.1"
                     /translation="MSAALQKDPVPAAAVADTILSVNNIEVVYDHVILVLKGVSLSVP
                     RGGIVALLGANGAGKTTTLKAISSLLRAERGEVTKGAIEFEGQSIARTSPNELVRRGC
                     IQVLEGRHCFGHLTIEENLLTGAFTRKDGNAAIRRDLEGIY"
     gene            complement(555..1877)
                     /locus_tag="VE686_08125"
     CDS             complement(555..1877)
                     /locus_tag="VE686_08125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009764465.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HYY84452.1"
                     /translation="MSFRNIAMGVAVAALVGTTALPAVAQDSVYVPLFTYRTGPFAGS
                     GIHIADGMHDYLRMLNERDGGIGGVKLVIEECETGYDTKKGVECYESVKGKNPVMVNP
                     WSTGITLPLIPRAAVDKIPILSMAYGLSASARGDIFPWVFNPPDTYWDGASIILKYIA
                     QKEGGIEKLKGKKIGYIHLDASFGKEPIPLLEQLSKDLGFELKMYPVGAQDMQNQSSQ
                     WLSVRRDRPDYMVLYGWGALNSTAIKEAVRVGYPMDKFISIWWPGEDDARGAGEGAKG
                     FKTLNWHATGTNFPALQDVIKHVVDKGLSKASKEKVGEVLYNRGIYNSMLIAEGIRNA
                     QKLTGKKVVTGEDVRRGLETINLDPARLKELGLEGFTSPIALSCTDHNGHRAAFVQEW
                     DGAKWVKVTDPIEPMTDRVKGQLDAAATDYAEKNTGWPKRTEPCDKQS"
     gene            complement(1967..3052)
                     /locus_tag="VE686_08130"
     CDS             complement(1967..3052)
                     /locus_tag="VE686_08130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009467584.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0015803 - branched-chain amino acid
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid ABC transporter
                     permease"
                     /protein_id="HYY84453.1"
                     /translation="MLYREAGQYKTTYAADMAIFPLREDRIGLALVIAFAYLLAFIGN
                     GFLLQAVLIPFLVFSLAAMGLNILTGYAGLLSLGTGAFMGVGAYACYKLTSAFPNVNV
                     IIWILASGFFSAAAGVLFGLPSLRIKGFYLAVATLAAQFFLQWCFIRVPWLVNYNASG
                     ALESPLRTLFGVPIMGATATPQTRYLVVLTLVIALTWLASNLVHGRIGRMWMAVRDMD
                     IAAELIGIRLLRTKLLAFAVSSYYCGVAGALLVFLWYGGAEYDVFDINQSFIILFMVI
                     IGGLGSLIGSFFGAALIFIMPIVLGIVVPAVLSPFGLRIGADVIEHLRFMVVGVLIIA
                     FLIAEPHGLARLWQIAKQKLRVWPFPY"
     gene            complement(3054..3968)
                     /locus_tag="VE686_08135"
     CDS             complement(3054..3968)
                     /locus_tag="VE686_08135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009758033.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0015803 - branched-chain amino acid
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid ABC transporter
                     permease"
                     /protein_id="HYY84454.1"
                     /translation="MVDAPDLLVQTLWEGLVSGVLYALIALGFVLIFKASGVFNFAQG
                     IMVVFAALTLVGLYEKGVPALLALVLAVGVMFLLALAVERVVLRPLVNQPDIILFMAT
                     FGLTYFLIGLGELIFGGSPKQMIASELYLPRGSTDVAMFGGRVSFQHIDIAAAVIASV
                     MIATLAVFFSKTRIGRALRAVADSHKAALSVGISLEQIWVVVWFTAGIVALVTGILWG
                     ARSDVSFALQIIALKALPVLILGGFTSIPGAIVGGLIIGVGEKIGEFYWGPLIGGGIE
                     TWLAYVIALLFLLYRPQGLFGEKIIERV"
BASE COUNT          732 a         1303 c         1376 g          640 t
ORIGIN      
        1 tcgtaaatcc cttcgagatc gcgtcggata gcggcgttgc cgtctttgcg cgtgaaggcg
       61 cccgtgagga ggttttcctc gatggtgaga tggccgaagc agtgacggcc ctccagaacc
      121 tggatgcagc cgcgccggac cagctcgttc ggcgaggtgc gggcaatgct ctggccctcg
      181 aactcgatgg cccccttggt cacctccccg cgctcggcgc gcaggaggct cgaaatggcc
      241 ttgagggtag tcgtcttgcc tgcgccgttg gccccgagca gcgccacgat gccgccgcgc
      301 ggcaccgaga gcgacacccc cttcaagacc aggatgacgt ggtcgtagac gacctcgatg
      361 ttgttgaccg acaggatcgt gtcggcgacg gccgcggcgg ggacaggatc cttctgcagg
      421 gcggcggaca tggaacctcc ggcggcaggg ggtccccctc ccgcttgcgg gagagggttg
      481 gggtgagggc catgccggcc ctcccccggt ctgcttgcag actcgacctc tcccgcaggg
      541 gggagaggga ggggttacga ctgcttgtcg cagggctccg tccgcttcgg ccagccggtg
      601 ttcttctcgg cgtagtcggt cgcggcggcg tcgagctgcc ccttgacgcg gtcggtcatc
      661 ggctcgatcg ggtccgtcac cttgacccac ttggcgccgt cccactcctg cacgaacgcg
      721 gcacggtggc cgttatgatc ggtgcaggag agcgcgatcg ggctcgtgaa cccttccagg
      781 ccgagctcct tcaggcgcgc cggatcgagg ttgatggtct cgagaccccg gcgcacgtcc
      841 tcgcccgtca ccaccttctt gccggtgagc ttctgcgcat tgcggatgcc ctccgcgatc
      901 agcatcgagt tgtagatgcc gcggttgtag agcacctcgc cgaccttctc cttcgaggcc
      961 ttcgacaggc ccttgtcgac gacgtgcttg atgacgtcct ggagcgccgg gaagttcgtg
     1021 ccggtggcgt gccagttgag ggtcttgaag cccttcgcgc cctcgccggc gccgcgggcg
     1081 tcgtcctcac ccggccacca gatggagatg aacttgtcca tcggatagcc gacccggacg
     1141 gcctccttga tggccgtgct gttgagcgcg ccccagccgt acaggaccat gtagtcgggc
     1201 cggtcgcggc gaacgctcag ccattgcgag gactggttct gcatgtcctg cgcgccgacc
     1261 gggtacatct tcagctcgaa gccgaggtcc ttcgagagct gctcgagcaa cgggatcggc
     1321 tccttgccga agctcgcgtc gaggtggatg tagccgatct tcttgccctt gagcttctcg
     1381 atcccgcctt ccttctgggc gatgtacttc aggatgatcg aggcgccgtc ccagtaggtg
     1441 tccggcggat tgaacaccca cgggaagatg tcgccgcgcg ccgaggcgga gaggccgtag
     1501 gccatcgaca ggatcgggat cttgtcgacc gccgcgcgcg ggatgagcgg cagggtgatg
     1561 ccggtcgacc acgggttcac catgaccgga ttcttgccct tcacggactc gtagcactcg
     1621 acacccttct tggtgtcgta gccggtttcg cattcctcga tgacgagctt gacgccgccg
     1681 atgccgccgt cgcgctcgtt cagcatgcgc agatagtcgt gcatgccgtc ggcgatgtgg
     1741 atgcccgacc ctgcgaaagg cccggtgcgg taggtgaaga ggggaacgta gaccgagtcc
     1801 tgcgccacgg cgggcagcgc cgtggttccg acaagggccg cgactgcgac gcccatggca
     1861 atgttacgaa acgacattct cgtttcctcc ggttggtgtc cggcgtttcc cggacgttct
     1921 gaacccgtcg tctcctgtcg cgccgttccc tcggcgcggg ctgccgtcag taggggaacg
     1981 gccacacccg gagcttctgc tttgcgatct gccagagccg cgcaaggccg tgcggctcgg
     2041 cgatcaggaa cgcgatgatc agcacaccga ccaccatgaa gcgcagatgc tcgatgacgt
     2101 cggctccgat cctgagcccg aaggggctga ggacggcggg gacgacgatg ccgagcacga
     2161 tcggcatgat gaagatcagg gccgctccga agaacgagcc gatgaggctg cccaaccccc
     2221 cgatgatcac catgaagagg atgatgaagg actggttgat gtcgaacacg tcgtattcgg
     2281 cgccaccata ccacaggaag acgagaagcg cgccagcgac gccgcagtag taggacgaca
     2341 ccgcgaaggc gaggagcttg gtgcgcaaca gcctgatgcc gatgagctcg gcggcgatgt
     2401 ccatgtcgcg caccgccatc cacatgcggc cgatgcggcc gtgcaccagg ttcgatgcga
     2461 gccacgtgag tgcgatcacc agcgtcagga cgacaaggta ccgtgtctgc ggcgtggccg
     2521 tcgcgcccat gatcggcacc ccgaacaggg tccgcaacgg ggactcgaga gcgcccgagg
     2581 cgttgtagtt gacgagccac ggcacgcgga tgaagcacca ctgcaggaag aactgcgccg
     2641 cgagcgtcgc gaccgcgagg tagaagccct tgatgcgcaa ggacggcagg ccgaagagca
     2701 cgcccgccgc ggccgagaag aacccggacg cgaggatcca gatgatcacg ttgacgttcg
     2761 ggaacgcgct cgtgagcttg tagcaggcgt atgcgccgac gcccatgaac gctcccgtgc
     2821 cgagcgacag gaggcccgcg tagccggtga ggatgttgag ccccatcgcc gcaagcgaga
     2881 acaccaggaa cgggatcagc accgcctgca gcaggaagcc gttgccgatg aaggccagca
     2941 ggtaggcgaa ggcgatgacg agcgcgagac cgatgcggtc ctcccgcagc gggaagatcg
     3001 ccatgtcggc ggcgtaggtg gtcttgtact ggccggcctc gcggtagagc acgtcacacc
     3061 ctctcgatga tcttctcgcc gaacagaccc tgcggccggt acaggaggaa caggagggcg
     3121 atgacgtagg cgagccaggt ctcgatgccg ccgccgatga gcgggcccca atagaactcg
     3181 ccgatcttct cgccgacgcc gatgatgagc ccgccgacga tcgccccggg gatcgacgtg
     3241 aagccgccga ggatcagcac cgggagggcc ttcagcgcga tgatctggag cgcgaaggac
     3301 acgtccgagc gggcgcccca caggatgccc gttacgagcg ccacgatgcc ggccgtgaac
     3361 cacacgacga cccagatctg ctcgagcgag atgccgaccg atagggcggc cttgtggctg
     3421 tcggccacgg ccctgagggc ccgcccgatc cgcgtcttgg agaagaacac cgccagcgtc
     3481 gcgatcatga cggaggcaat gacggcggca gcgatgtcta tgtgctggaa gctcacgcgc
     3541 ccgccgaaca tggcgacgtc cgtggagccg cgcggcaggt agagctcgct cgcgatcatc
     3601 tgcttcgggc tgccgccgaa gatcagctcg ccgaggccga tgaggaaata ggtgagcccg
     3661 aaggtcgcca tgaacaggat gatgtcgggc tggttcacca gcggccgcaa gacgacccgc
     3721 tccaccgcaa gcgcgagcag gaacatgacc ccgacggcga gcacgagcgc gagcagcgcc
     3781 ggcacaccct tctcgtagag gccgacgagg gtcagcgccg cgaacaccac catgatgccc
     3841 tgcgcgaagt tgaagacgcc cgacgccttg aagatgagca cgaagccgag cgcgatgagc
     3901 gcgtagagga cgcccgacac gaggccctcc cagagcgtct ggaccaggag atccggcgcg
     3961 tcgaccatca gcacgaacgg gtcgacgaag acgtcgtaga tcggattgcc ggtggtcagg
     4021 acgccggccc gcaccgcgac gacgagcgcc a
//
LOCUS       DASQWN010000431         4945 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1364487, whole genome shotgun sequence.
ACCESSION   DASQWN010000431 DASQWN010000000
VERSION     DASQWN010000431.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 4945)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4945)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4945
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1364487"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(62..544)
                     /locus_tag="VE686_08140"
     CDS             complement(62..544)
                     /locus_tag="VE686_08140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013167876.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HYY84455.1"
                     /translation="MSLSLRPARPGDAALVLALIRELAEYERLTREVDATEAAIEAAL
                     FGATPRVFCDLAEWEDAPAGLAIWFYSFSTFRGRHGIYLEDLFVRPQFRGRGVGRALL
                     ASLARRCVAEDLPRLEWSVLDWNEPALSFYRALGATAMDGWTVERLDGEALGRLGAGR
                     "
     gene            complement(632..925)
                     /locus_tag="VE686_08145"
     CDS             complement(632..925)
                     /locus_tag="VE686_08145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019906505.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2293 domain-containing protein"
                     /protein_id="HYY84456.1"
                     /translation="MSRRAALEAAVRALAPRIPKHELESVVDHALVSAGLRTAAPEAA
                     AWLSLVAYVRHALTDYDALLADGYDHDSARFFVAAEMDDVLAGWGATRRVGDE"
     gene            complement(929..1723)
                     /locus_tag="VE686_08150"
     CDS             complement(929..1723)
                     /locus_tag="VE686_08150"
                     /EC_number="2.1.1.45"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015951158.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004799 - thymidylate synthase activity
                     [Evidence IEA];
                     GO_process: GO:0006231 - dTMP biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thymidylate synthase"
                     /protein_id="HYY84457.1"
                     /translation="MRQYHDLLRRILDEGVRKHDRTGTGTLSVFGHQMRFDLSEGFPL
                     VTTKKLHLKSIVHELLWFLKGDTNVAYLQQHGVSIWDEWADEKGDLGPVYGKQWRSWE
                     KPGGGTVDQIAWVLDEIRRNPDSRRLIVSAWNPADLDRMALAPCHCLFQFYVAEGRLS
                     CQLYQRSADAFLGVPFNIGSYALLTQMMAHVTGLQPGDFVHAFGDAHLYLNHLEQARL
                     QLSRDPRPLPHLRLNPSVRSLFDFSFDDILIEGYEPHPAIRAPVAV"
     gene            1928..2602
                     /locus_tag="VE686_08155"
     CDS             1928..2602
                     /locus_tag="VE686_08155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003597772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ClpXP protease specificity-enhancing factor
                     SspB"
                     /protein_id="HYY84458.1"
                     /translation="MAKDLIRYDLLVQDALKGVVRKVLGDAIRDGLPGDHHFYISFRT
                     DFPGVRVSQRLRDKYPQEMTIVLQHQFWDLGVTEHAFEVGLSFSGIPERLLVPFDALT
                     GFFDPSVQFGLRFEVQDGAGQAPAVQAPSAPAPVVGPVVRQARGAGSEPTEAAPKKPV
                     LPVAAKTAAPKLALKPATPPSDKPAPKQDRPEKPGKPAAGPTVADKSDEGGADVVSLD
                     AFRKKN"
     gene            complement(2615..2767)
                     /locus_tag="VE686_08160"
     CDS             complement(2615..2767)
                     /locus_tag="VE686_08160"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY84459.1"
                     /translation="MPRSKMKGDNSADSKGADSEARGSGGTTKKSQNPGKQSNQKAAN
                     TKSNTQ"
     gene            3017..3172
                     /locus_tag="VE686_08165"
     CDS             3017..3172
                     /locus_tag="VE686_08165"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY84460.1"
                     /translation="MPLHLHFADPPKPKPRIAPTPQPQASDLRVALATIGTSFAVLAA
                     AYWLVGR"
     gene            3423..4265
                     /locus_tag="VE686_08170"
     CDS             3423..4265
                     /locus_tag="VE686_08170"
                     /EC_number="7.6.2.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009764107.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HYY84461.1"
                     /translation="MAVRAQAPQSAASQAAVALQDLSIAFSVGGGGRYTAVEAIDLVA
                     RPGEFVSIVGPTGCGKSTLLNVSAGLLRPSAGAVHIFGAPLSGLNGRAGYLFQQDALM
                     PWKTAIDNVAVALEPAGVPRAEALSRARDWLRRVGLSAFVDRYPHMLSGGQRKRVALA
                     QMLIRDPEILLMDEPFGPLDAQTRQMMGNLLLDLWAANRKAVLFVTHDLEEAISLSDR
                     VVVMSAGPNSRIVGEFPVSLARPRDISEIRLEPAFHHIHKEIWSSLRVEVQKAYAAGE
                     GAAA"
     gene            4262..>4945
                     /locus_tag="VE686_08175"
     CDS             4262..>4945
                     /locus_tag="VE686_08175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008131546.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HYY84462.1"
                     /translation="MSRAKLLALQVLVGIGMLVIWHVLTVYPIIGAPKQVQFFFSTPL
                     DVIARVIKEFSGTDIWRHLGITLTETVLAFATGSLGGILLGFAFARRALLAAVFDPYV
                     KMLNALPRVVLAPIFALWLGLGIWSKVALGFTLVFFIVFFNVYQGVREVSPTVLANAR
                     MLGMNERQLLRHVYWPAALTWVFSSLHTSVGFALVGAVVGEYLGSSAGLGYKIHEAES
                     VFDVTGVFSG"
BASE COUNT          713 a         1689 c         1729 g          814 t
ORIGIN      
        1 cgattgtcgc ggccgatcac gccgttgtcg gcgatcgcgg cgacgagggc gagcggacgc
       61 gtcatcggcc ggctcccaga cgcccgagcg cctcgccgtc gagccgctcg acggtccacc
      121 cgtccatcgc ggtcgcgccg agcgcgcggt agaacgagag ggccggctcg ttccaatcga
      181 gcaccgacca ctccagtcgc ggcaggtcct cggcgacgca gcgcctggcg agactggcaa
      241 ggagcgcccg gccaacgccg cggccgcgga actgcggccg cacgaacaga tcttccaggt
      301 agatgccgtg ccgaccgcgg aaggtggaga agctgtagaa ccagatggcg agaccggccg
      361 gcgcgtcctc ccattcggcg aggtcgcaga agacccttgg cgtcgcgccg aacagggccg
      421 cctcgatggc cgcctcggtg gcgtcgacct cgcgcgtcag gcgctcgtac tcggcgagct
      481 cgcggatgag tgcaaggacg agcgcggcgt cgccgggccg ggcagggcga agggacaagg
      541 acatgccgct gtctagcgcg ctcgatgggc aaggggccag agggagaggg ggcaagaggg
      601 agcaagaggg agcggggcag gacgccgcgg actactcgtc gcccacgcgc cgcgtcgcgc
      661 cccatcccgc cagcacgtcg tccatctcgg ccgcgacgaa gaagcgcgcg ctgtcgtgat
      721 cgtagccgtc ggcgaggagc gcgtcgtagt cggtgagcgc gtggcggacg taggcgacga
      781 gggagagcca cgccgccgcc tccggggcgg cggtgcgaag ccccgcgctg acgagggcgt
      841 ggtcgacgac cgactcgagc tcgtgcttcg ggatgcgcgg ggcgagggcc cgcacggccg
      901 cttcgagggc ggcccgtcgg ctcacgttct acaccgcgac cggcgcccgg atggccggat
      961 gaggctcgta gccttcgatc aggatgtcgt cgaagctgaa gtcgaagagc gagcgcacgg
     1021 acgggttcag gcgcaggtgg ggcagggggc gcgggtcgcg cgagagctgc aggcgtgcct
     1081 gctcgagatg attgaggtac aggtgcgcat ctccgaacgc gtgcacgaag tcgcccggct
     1141 gcagccccgt cacatgcgcc atcatctgcg tgaggagggc gtaggatccg atgttgaagg
     1201 gcacgccgag gaaagcgtcg gccgagcgct ggtagagctg gcacgagagc cgcccttcgg
     1261 cgacgtagaa ctggaacagg caatggcacg gcgcgagcgc catgcggtcg aggtcggccg
     1321 ggttccaggc cgacacgatg aggcggcgcg aatctgggtt gcggcggatc tcgtcgagga
     1381 cccaggcgat ctggtcgacg gtgccgccgc cgggcttctc ccaagagcgc cactgcttgc
     1441 cgtagaccgg gccgaggtcg cccttctcgt cggcccattc atcccagatc gagaccccgt
     1501 gctgctgcag gtaggcgacg ttggtgtcgc ccttcaggaa ccacagaagc tcgtgcacga
     1561 tggacttgag gtgcagcttc ttcgtggtga cgagcgggaa cccctccgac agatcgaagc
     1621 gcatctggtg gccgaagacc gagagcgtgc cggtcccggt gcggtcgtgc ttgcgcacgc
     1681 cctcgtcaag gatcctgcga agaagatcgt gatactggcg catgaacggc tcctgccggc
     1741 ttatagcgcg ccggcgcggc gacaagaatg tgcccgaacc cgttttcccc gatcttccct
     1801 ttggccgggg cccaccttat agttccagtg acgcctaagc cccgccgcac tccgaagcag
     1861 gccgccgctg ggcggggttg agggcctctg gcaagagaac ccgcttcaag ccctttctgg
     1921 aacgttgatg gccaaagacc tgatccggta cgacctcctg gtgcaggacg cgctcaaggg
     1981 ggtcgtgcgc aaggtcctcg gcgacgccat ccgcgacggc ctgccgggcg accatcattt
     2041 ctacatttcg ttccggaccg attttccagg cgtgcgagtg tcgcagcgcc tgcgggacaa
     2101 gtacccgcag gagatgacga tcgtcctcca gcaccagttc tgggatctcg gcgtgacgga
     2161 gcatgcgttc gaggtcgggc tgtcgttctc ggggatcccc gagcggcttc tcgtgccctt
     2221 cgacgcgctg accggattct tcgatccgtc cgttcagttc ggcctgcgct tcgaggtgca
     2281 ggacggcgcc ggccaagcgc cagccgtgca ggccccgagc gcgccagccc cggtggtcgg
     2341 gccggtcgtg cggcaggccc gcggcgccgg ctcggagccc accgaggccg cgccgaagaa
     2401 gccggtgctc ccggtcgcgg ccaagacggc cgctccgaag ctcgccctca agccggccac
     2461 tcctccgagc gacaagcccg cgccgaagca ggaccggccc gagaagcccg ggaagcctgc
     2521 cgccggcccg acagtggccg acaagagcga cgaaggcggc gcggacgtcg tcagcctgga
     2581 cgcgttccgc aagaagaact gagcgcgtcg cgcgctactg cgtgttgctc ttggtattcg
     2641 cggccttctg gttgctctgc ttgccggggt tctgggactt cttggtcgtg ccgccggagc
     2701 cccgcgcctc cgagtccgcg cccttgctgt ccgccgagtt gtcgcccttc atcttcgatc
     2761 gaggcatggc ccgctcctga aacctggttg cgggtgagaa ccggcgatcg cgcgcgacgg
     2821 ttccgcgccg ggctatgccg cgttcaaagg cgtgcacgac accgcctttt ggcggagccc
     2881 ccggcgtgag cttgccgctc gccgggcgtc tccgattctc gccgatgatg ccgtttttcg
     2941 acggtcggct taaccgggcg tgagcagcgg ggctgcactt tgcatgcggg ggcgcgggac
     3001 ttcgagggag caccacatgc ccttgcacct gcatttcgcc gatccgccga agccgaagcc
     3061 gcggatcgcg ccgacgccgc agccgcaagc gagcgacctc agggtcgcgc tcgcgaccat
     3121 cggcacctct tttgccgtcc tcgcggcggc ctactggctc gtcgggcgct aggcccgggc
     3181 gacgcctgga gccccttgca cggcgacggc ggcaccgcgg cccggtcgcg gcgctcgtcg
     3241 ccggcgctcg ccgtcatcgt cgtcgacatc ggcatcttcc cggatttgtc ggagcgcccg
     3301 tagggggctt ttccggcatt gtcgtggatt cttccatgat cgacgccggc cttgcttcgc
     3361 cggcagtgat tgacttacct gcgccacagg ccggcaaggc cgggccgcag ggaggatcga
     3421 gagtggcggt gcgcgcgcag gcgcctcaat cggcggcgag ccaggccgcg gtcgcccttc
     3481 aggatctctc gatcgccttc tcggtgggcg ggggcgggcg ctacacggcc gtcgaggcca
     3541 tcgatctcgt cgcccggccc ggcgagttcg tctccatcgt cggcccgacg ggctgcggga
     3601 aatcgaccct gctcaacgtc tcggcgggcc tgctgcggcc gtcggccggc gcggtgcaca
     3661 tcttcggcgc gccgctgtcg ggtctgaacg ggcgcgccgg ctacctcttc cagcaggatg
     3721 cgctgatgcc ctggaagacc gccatcgaca atgtcgcggt ggcgctcgag ccggcggggg
     3781 tgccccgcgc cgaggcgctc tcccgcgccc gggactggct gcgccgggtc ggcctttccg
     3841 ccttcgtcga tcgctacccg cacatgctct cgggcggcca gcgcaagcgc gtggcgctcg
     3901 cccagatgct catccgcgat cccgagatcc tgctcatgga cgagccgttc gggcctctcg
     3961 atgcgcagac gcggcagatg atgggcaacc tcctgctcga cctgtgggcg gcgaaccgca
     4021 aggcggtgct gttcgtcacg cacgacctcg aggaggcgat ctcgctgtct gatcgcgtgg
     4081 tggtcatgtc ggccggaccg aactcgcgca tcgtcggcga gttcccggtc tcactggccc
     4141 ggccgcggga tatttcggag atcaggctcg agccggcttt ccaccatatc cacaaggaga
     4201 tatggtcgag ccttcgcgtc gaagttcaaa aggcctacgc ggccggcgag ggagccgccg
     4261 catgagccgg gcgaagcttc tcgcgctgca ggtcctcgtc ggcatcggca tgctcgtgat
     4321 ctggcacgtg ctgaccgtgt acccgatcat cggcgcgccg aagcaggtgc agttcttctt
     4381 ctcgactccg ctcgacgtga tcgcgcgcgt catcaaggag ttttcgggga ccgacatctg
     4441 gcgccacctc ggcattaccc tgaccgagac ggtgctggcc ttcgcgaccg gctccctggg
     4501 cggcatcctc ctgggcttcg ccttcgcgcg ccgcgccctc ctggcagcgg tgttcgaccc
     4561 ctacgtcaag atgctgaacg cgctcccgcg cgtcgtgctt gccccgatct tcgcgctctg
     4621 gctcggcctc ggcatctggt cgaaggtggc gctcggcttc acgctcgtgt tcttcatcgt
     4681 gttcttcaac gtctaccagg gcgtgcgcga ggtgagcccg acggtgctcg ccaacgcccg
     4741 catgctcggc atgaacgagc gccagctcct gcgccacgtc tactggccgg cggccctcac
     4801 ctgggtcttc tcctccctgc acacctcggt cgggttcgcc ctcgtcggcg cggtggttgg
     4861 cgaatatctc ggttcctcgg ccgggctcgg ctacaagatc cacgaggcgg agagcgtctt
     4921 cgacgtcacc ggggtcttct ccggc
//
LOCUS       DASQWN010000432         2660 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1265444, whole genome shotgun sequence.
ACCESSION   DASQWN010000432 DASQWN010000000
VERSION     DASQWN010000432.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2660)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2660)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2660
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1265444"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..733)
                     /locus_tag="VE686_08180"
     CDS             complement(<1..733)
                     /locus_tag="VE686_08180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020186331.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase family protein"
                     /protein_id="HYY84463.1"
                     /translation="MNVAVKPPVRREAMRIAGRLVETGDTVDVFNPYTNEVVGTVPAA
                     RPEHVRDAFARARAFKPKLTRYERQQILQRTAEILRDRKEDFARLITAESGLCWKDSL
                     YEASRAYDVWSFAAQLTIKDDGEIYSCDISPNGKSRKIYTMRTPLLGVISAITPFNHP
                     LNMVSHKLAPAIATNNRLVLKPTELTPLTALALADVLYEAGLPPEMLSVVTGNPSTMG
                     DAMITDPDADLVTFTGSVRVGKQIAS"
     gene            complement(730..1983)
                     /gene="phnA"
                     /locus_tag="VE686_08185"
     CDS             complement(730..1983)
                     /gene="phnA"
                     /locus_tag="VE686_08185"
                     /EC_number="3.11.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020186332.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0047400 - phosphonoacetate hydrolase
                     activity [Evidence IEA];
                     GO_process: GO:0019636 - phosphonoacetate metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphonoacetate hydrolase"
                     /protein_id="HYY84464.1"
                     /translation="MQGKIGAAVTANGRSYRVPTTPTVVVCIDGSEPGYIEAAIDKGL
                     APNLERLMRTGANLLAQSVIPSFTNPNNISIITGRPPAVHGIAGNYFYDRAAGEEVMM
                     NDARFMRAGTIMKAFQDAGAKVAVVTAKDKLRTLLGYGLDMSKGTAMAFSSEKADKAS
                     LAENGIENVLEFVGMPLPDVYSAELSEFVFAAGVKILRTHRPDLMYLSTTDYVQHKAG
                     PGSEFANAFYAMLDRYVGHLDASGCVLALTADHGMNDKHRSDGEPDVVYLQEILDEWL
                     GAGVARVILPITDPYVVHHGALGSFATVYLPDETDRASLLPRLKALEGIDEAMDAKEA
                     CHRFELPADRIGDLVIVSGKHKVLGTARARHDLSGLTEPLRSHGGITEQTVPMIVNRK
                     VEVPAGRTLRNFDVFDVALNLVRAP"
     gene            complement(2003..>2660)
                     /locus_tag="VE686_08190"
     CDS             complement(2003..>2660)
                     /locus_tag="VE686_08190"
                     /EC_number="2.6.1.37"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020186333.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0047304 - 2-aminoethylphosphonate-pyruvate
                     transaminase activity [Evidence IEA];
                     GO_process: GO:0019700 - organic phosphonate catabolic
                     process [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="2-aminoethylphosphonate--pyruvate transaminase"
                     /protein_id="HYY84465.1"
                     /translation="CERTGKRLLVDAMSAFGALPLDSRESRFDAVAASSNKCIEGVPG
                     LGFVICRREALAETAGHATTLVLDLHDQHQAFERTGQYRFTPPIHVIVAFHKALEEFF
                     AEGGVAGRGGRYSENARVLIDGMRALGFEPLLTPALQAPIIVTFHMPRNPHFVFQRFY
                     DALKERGYVIYPGKLTVADSFRIGCIGRLYPKDMQGALAAVRDVLDEMGVRLEPAQAA
                     "
BASE COUNT          431 a          830 c          928 g          471 t
ORIGIN      
        1 tcgaggcaat ttgcttgccg acccgcaccg agcccgtgaa ggtcacgaga tctgcgtccg
       61 ggtcggtgat catcgcatcc cccatcgtgg agggattgcc cgtcaccacc gacagcatct
      121 cgggcggcag cccggcctcg tagagcacgt cggcaagggc gagcgctgtg agcggcgtca
      181 gctccgtcgg cttgagcacc aggcggttgt tggtggcgat cgccggcgca agcttgtggc
      241 tcaccatgtt gagggggtgg ttgaacggcg tgatggccga gatcacgccg agcagcggcg
      301 tgcgcatcgt gtagatctta cggctcttgc cgttggggct gatgtcgcag gagtagatct
      361 cgccgtcgtc cttgatggtg agctgcgccg cgaaggacca cacgtcgtag gcacggctcg
      421 cctcgtacag cgagtccttc cagcacaggc ccgactcggc cgtgatcagg cgagcgaaat
      481 cctccttgcg gtcgcggagg atttcggcgg tgcgctgcag gatctgctgg cgctcatacc
      541 gcgtgagctt cggcttgaac gcgcgcgccc gggcgaaggc gtcgcgcacg tgctccgggc
      601 gggcggccgg gacggtgccg acgacctcgt tcgtatacgg gttgaagacg tcgacggtgt
      661 caccggtctc gaccagccgg ccggcgatgc gcatcgcctc gcgacggacg gggggcttca
      721 cggcgacgtt catggggccc tcacgaggtt cagggcgacg tcgaagacgt cgaagttgcg
      781 aagggtacgt ccggccggga cctcgacctt gcgattcacg atcatcggga cggtctgctc
      841 ggtgatgccg ccgtgcgagc gcaggggttc ggtgaggccc gaaagatcat gcctggcgcg
      901 ggcggtgccg agcaccttgt gcttgccgga gacgatcaca aggtcgccga tgcgatcggc
      961 ggggagctca aagcgatggc acgcctcttt cgcatccatg gcctcgtcga tgccttcgag
     1021 tgccttgagc ctcgggagca acgaggcgcg gtctgtttca tccgggaggt agacggtcgc
     1081 aaacgagccg agcgcgccgt ggtgcacgac gtaagggtcg gtgatgggca ggatcacgcg
     1141 ggcaacgccg gcaccgagcc actcgtcgag gatttcctgg agatagacca cgtccggctc
     1201 gccgtcggac cggtgcttgt cgttcatgcc gtggtcggcc gtgagtgcga gcacgcagcc
     1261 cgacgcatcg aggtgcccga cgtatcgatc gagcatggcg tagaaggcgt tggcgaactc
     1321 cgagccgggg ccggccttgt gctgcacgta gtcggtcgtc gacaggtaca tgaggtctgg
     1381 ccggtgggtg cgcaggatct tcacgcccgc ggcgaacacg aattcggaca gctcggccga
     1441 atagacgtcg ggcagcggca tgccgacgaa ctcgagcacg ttctcgatcc cgttctccgc
     1501 aaggctcgcc ttgtcggcct tctcggacga gaacgccatc gccgtgcctt tgctcatgtc
     1561 gagcccgtag ccgagaaggg tgcgcagctt gtccttcgcg gtgacgacgg cgaccttggc
     1621 gccggcgtcc tggaacgcct tcatgatggt gccggcgcgc atgaagcgcg catcattcat
     1681 catcacctcc tcgccggccg cgcggtcgta gaagtaattg cccgcgatgc cgtgcaccgc
     1741 cgggggccgg ccggtgatga tcgagatgtt gttggggttg gtgaagctcg ggatcaccga
     1801 ctgcgcaagg aggttcgcgc cggtgcgcat gaggcgctcg aggttgggcg cgagcccctt
     1861 gtcgatcgcg gcctcgatgt agcccggctc cgagccgtcg atgcacacca cgaccgtcgg
     1921 ggtcgttgga acgcgatagc tgcgcccgtt ggccgttaca gccgcgccga tcttgccctg
     1981 catggtcatt gtccgtgctt cctcaggccg cctgcgccgg ctcgagccgc acacccatct
     2041 cgtcgagcac gtcccgcaca gccgcgaggg caccctgcat gtccttggga tagagacgcc
     2101 cgatgcagcc gatccggaac gagtcggcga ctgtgagctt gcccgggtag atgacgtagc
     2161 cgcgttcctt cagggcgtcg tagaagcgct ggaacacgaa atgcggattt cgcggcatgt
     2221 ggaacgtcac gatgatcggc gcctgcaaag ccggcgtcag cagcggctcg aaccctagcg
     2281 cgcgcatgcc gtcgatgagc acgcgggcgt tctcggaata acggccgcct ctgcctgcca
     2341 cgccgccttc ggcaaagaac tcctctagag ccttgtggaa ggccacgatg acgtggatgg
     2401 gcggcgtgaa gcggtattgg ccggtccgct cgaaggcctg atgctggtca tgaagatcga
     2461 ggacgagcgt ggtggcatgt cctgccgtct cggccagggc ttcgcgccgg cagatgacga
     2521 acccgaggcc tggcacaccc tcgatgcatt tgtttgacga cgcggccacg gcatcgaatc
     2581 gagactctcg cgaatccagg ggcagggcgc cgaacgcgct catcgcatcc accagcaggc
     2641 gcttgcccgt ccgctcgcag
//
LOCUS       DASQWN010000433         2771 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1265662, whole genome shotgun sequence.
ACCESSION   DASQWN010000433 DASQWN010000000
VERSION     DASQWN010000433.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2771)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2771)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2771
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1265662"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..922)
                     /locus_tag="VE686_08195"
     CDS             complement(<1..922)
                     /locus_tag="VE686_08195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018642425.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004356 - glutamine synthetase activity
                     [Evidence IEA];
                     GO_process: GO:0006542 - glutamine biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0006807 - nitrogen compound metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine synthetase beta-grasp
                     domain-containing protein"
                     /protein_id="HYY84466.1"
                     /translation="MQTAKDVLRAIKDNDVKYVDFRFTDPRGKWQHVTFDVSMIDEDI
                     FAEGTMFDGSSIAGWKAINESDMVLMPDPATACMDPFFSAATMSIVCDILEPASGEPY
                     GRDPRGMAKKAEAFLKSTGVGDTIFVGPEAEFFVFDDVKFMADPYNTGFQLDAAELPT
                     NGDTDYEGGNLGHRVQIKAGYFPVPPQDSAQDMRGEMLAAMASMGVKVEKHHHEVASA
                     QHELGMKFDTLTLMADHLQIYKYCIHNVAHSYGKSATFMPKPVYGDNGSGMHVHQSIW
                     RDGKPVFAGNKYSDLSQECLWYIGGIIKHAK"
     gene            complement(1000..1338)
                     /locus_tag="VE686_08200"
     CDS             complement(1000..1338)
                     /locus_tag="VE686_08200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018698238.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="P-II family nitrogen regulator"
                     /protein_id="HYY84467.1"
                     /translation="MKKIEAIIKPFKLDEVKEALQDVGLQGITVIEAKGFGRQKGHTE
                     LYRGAEYVVDFLPKVKLEIVLSDGLVDAAVEAIRKAAQTGRIGDGKIFVSTVEEAIRI
                     RTGETGTDAI"
     gene            1602..1678
                     /locus_tag="VE686_08205"
     tRNA            1602..1678
                     /locus_tag="VE686_08205"
                     /product="tRNA-Asp"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1636..1638,aa:Asp,seq:gtc)
     gene            1703..1939
                     /locus_tag="VE686_08210"
     CDS             1703..1939
                     /locus_tag="VE686_08210"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY84468.1"
                     /translation="MAGPPAPRTFKSDILRRATVYEAELIELALTASSPKYRDLFRDV
                     QYLDHDDPRFPVLRSGFIDAFGEARADELLAPSE"
     gene            2442..>2771
                     /locus_tag="VE686_08215"
     CDS             2442..>2771
                     /locus_tag="VE686_08215"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY84469.1"
                     /translation="MLDARRRIAVLIAAAVALASPCGALGQEQPPVITVRPSGVLDEG
                     AEARRRQEQLLRRLQASEYQFRSICRVCGSPERFEVAAPFEPQQALSAPPARPAPSAA
                     PPPAAAAL"
BASE COUNT          419 a          914 c          919 g          519 t
ORIGIN      
        1 ccttggcgtg cttgatgatg ccgccgatgt accacaggca ctcctgggac aggtcggagt
       61 acttgttgcc ggcgaagacc ggcttgccgt cgcgccagat cgactggtgg acgtgcatgc
      121 ccgagccgtt gtcgccgtag accggcttcg gcatgaaagt cgcagatttt ccatatgaat
      181 gggcgacatt gtgaatgcag tacttgtaga tctgcaggtg gtcggccatg agcgtcagcg
      241 tatcgaactt catgccgagc tcgtgctggg ccgaggcgac ctcgtggtgg tgcttctcga
      301 ccttcacgcc catcgaggcc atggcggcga gcatctcgcc gcgcatatcc tgcgccgagt
      361 cctgcggcgg aacggggaag tagccggcct tgatctgcac gcggtggccg aggttgccgc
      421 cctcgtagtc ggtgtctccg ttggtgggga gctcggccgc gtccagctgg aaccccgtgt
      481 tgtacgggtc cgccatgaac ttcacgtcgt cgaagacgaa gaactcggcc tccgggccca
      541 cgaagatggt gtcgccgacg ccggtcgact tgaggaaagc ctcggccttc ttggccatgc
      601 cgcgggggtc gcggccgtag ggctcgccgc tcgccggctc gaggatgtcg cacacgatcg
      661 acatggtcgc cgccgagaag aacgggtcca tgcaggccgt cgccgggtcc ggcatcagca
      721 ccatgtccga ctcgttgatg gccttccagc cggcgatcga ggagccgtcg aacatcgtgc
      781 cttcggcgaa gatgtcctcg tcgatcatgg acacgtcgaa ggtgacgtgc tgccacttgc
      841 cgcggggatc ggtgaagcgg aaatcgacgt acttgacgtc gttgtccttg atcgccctga
      901 gcacgtcctt ggcggtctgc attcgtgtgg tcctcttctg cccttgtgaa ttgttcgcgc
      961 ggccggccgg ccggcgtctt gagccttagg gaatgcgcgt cagatcgcgt ccgtcccggt
     1021 ctcgccggtg cggatgcgga tcgcttcctc gaccgtcgat acaaaaatct tgccatctcc
     1081 gatgcggccg gtctgggcgg ccttgcggat cgcttcgacg gcggcgtcga cgagcccgtc
     1141 ggacagcacg atctcgagct tcaccttggg gaggaagtcg accacgtact cggcgccgcg
     1201 gtacagctcg gtgtggccct tctggcgccc gaagcccttg gcctcgatga ccgtgatgcc
     1261 ctgcagcccc acgtcctgca gggcctcctt cacctcgtcg agcttgaacg gcttgatgat
     1321 ggcttcgatc ttcttcatgg gcggtcccgc gccccctccg aagaggacgg ctgtgctgcg
     1381 atggaagtgc cgcttctagc atcacggccg gggccgttcc acgtaccatt tcggcgtcgg
     1441 tggcgaactc tgcacaccgc ttgggcggaa gcagcctaaa ttgcaggcac tccgcttgct
     1501 gcagggccct ccaccgatgt cgcgcgacgc cctcgctcgc ttgacaccaa gggggctgga
     1561 aactacatcg cgctcctcgc tgccggtcag cggccgcccg cgcgggcgta gctcagttgg
     1621 ttagagtgcc ggcctgtcac gccggaggtc gcgggttcga gccccgtcgc ccgcgccact
     1681 ataagctctt gcggtgagat ggatggccgg cccacctgct ccccggacct tcaaatcgga
     1741 tatcctgcgg cgcgcgacgg tgtacgaggc tgagctgatc gagctcgcgc tcaccgcctc
     1801 gtcgccgaag taccgggatc tgttccgcga cgtgcagtac ctcgatcatg atgatccccg
     1861 atttcccgtg ctgcggagcg gcttcatcga cgcgttcggc gaagcacggg cggacgagct
     1921 gctcgcgccg tcagagtgat cgacgaggcc cggcggctcg tcgtcagcgg caagagtctc
     1981 ggacatgcaa ttaaccattg cgtaaccata aacttgcctg ctcgacggca aaggtgcagt
     2041 tgtttgctgg tccaatcctg agggggagca gctgcagtgg agcagttcca gcgtcgtgac
     2101 gtcgtcgagc ctcggcactc tcccgcatac gtcgcccaga ttggacgaga gtggcgcatc
     2161 gtggtgccca tccgcgggaa gctatgcccc aagctcgcga cgccgatgtt cctggcgcga
     2221 gacgccgccg agctgtggct gcgtagttcc gacggacagc aatgcgtcgt gagcctgcgc
     2281 gagcgacctc aacgcgccca cttggtcggg aacgcagacc cgtccttggc cgcggcaccg
     2341 ctggccctcg ccgcaagctt gtaagaccgc ccgtctcgct caggggaggc accggacgac
     2401 accggggtgc tttcgacagc acgtttgcgg taagacgggg cgtgctcgac gccagacgcc
     2461 gaatcgctgt cctcattgcg gccgccgtgg cccttgcctc tccgtgcggc gcgttggggc
     2521 aggagcagcc cccggtcatc accgtacgac cctcgggcgt gctcgacgag ggcgcagagg
     2581 ctcggaggcg gcaggagcaa ctcctgcggc ggctccaggc gagcgaatac cagttccggt
     2641 ccatctgccg cgtgtgcggc tcgcccgagc ggttcgaagt cgcggcgccg ttcgagcccc
     2701 agcaggcgct ctcggcgccg cccgcacggc cggcgccgtc tgccgcgccg cccccggcag
     2761 cggccgcgct g
//
LOCUS       DASQWN010000434         2337 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_770380, whole genome shotgun sequence.
ACCESSION   DASQWN010000434 DASQWN010000000
VERSION     DASQWN010000434.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2337)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2337)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2337
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_770380"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..210
                     /locus_tag="VE686_08220"
     CDS             <1..210
                     /locus_tag="VE686_08220"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY84470.1"
                     /translation="APPALPPPAGALVAAGPEAGEADEAPCVVRTVGASAACAPPRLK
                     IFDMIELKMLMMRLRRASSARVQGK"
     gene            complement(239..742)
                     /locus_tag="VE686_08225"
     CDS             complement(239..742)
                     /locus_tag="VE686_08225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012452133.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YidB family protein"
                     /protein_id="HYY84471.1"
                     /translation="MSRGFPSMTALLGLLAVAGYQNRDKLAELLGGAGQAMSGGAGGG
                     RGMPGGAGAQQGGGAQQGGLGGLLGQLGGGLGGAGAGGFLGSGLSELLERFTQAGQGE
                     TAQSWVRQGPNEPIDPPRLEQAIGPDVLDTLSKQTGLPREELLARLSRELPEAVDKYT
                     PQGQLPL"
     gene            complement(817..1494)
                     /locus_tag="VE686_08230"
     CDS             complement(817..1494)
                     /locus_tag="VE686_08230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020174735.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lactate utilization protein"
                     /protein_id="HYY84472.1"
                     /translation="MSDTSARDDIFANIRRSLGVKGREAPRRHVVEDRLGRAPRGIIP
                     ERGQLSGDALISMFKAQAEAAFTTVAEVDSTADVPDAVATFLRNHNLPASVRMGDDLR
                     LRAMAWDATSLEVKRGRSDGHDLNGVSHAFGAVAESGTLVLVSGPENPSTVNFLPDNH
                     IVIIAAKDVAGDYETVLARVREAYSGAMPRTVNFITGPSRSADIEQTLLLGAHGPRRL
                     HVVLVRS"
     gene            complement(1491..>2337)
                     /locus_tag="VE686_08235"
     CDS             complement(1491..>2337)
                     /locus_tag="VE686_08235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019400304.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="LUD domain-containing protein"
                     /protein_id="HYY84473.1"
                     /translation="DRFLAADVGVTGANFLVAETGTSVIVTNEGNGDLTQILPRVHIV
                     VASIEKIVPTLEDVSQILRVLARSATGQDMSVYTTLSTGPRRPEDVDGPEAYHVVILD
                     NGRSAMLGTSFQEMLRCIRCGACMNHCPIYHAVGGHAYGWVYPGPMGAVLTPSLIGVD
                     KAGHLPNASTFCGRCESVCPVRIPLPKLMRHWREREFERHLTAPTVRAGLKLWGFFAR
                     RPGLYRLATRAAMGGLALLGRSKGRFGALPLAGNWTKNRDFPAPQGDTFQARWRKERA
                     RRRVA"
BASE COUNT          328 a          805 c          868 g          336 t
ORIGIN      
        1 gcgccgcccg cgttgccacc tcccgccggc gcgctcgtgg cggccggccc cgaggcgggc
       61 gaggccgacg aggccccctg cgtggtccga acagtggggg cctcggcagc ctgcgcaccg
      121 ccgcggttga agatcttcga catgatcgaa ctgaaaatgc tcatgatgcg tctccggcgg
      181 gcctcctcgg cccgcgtcca ggggaagtga aatcggcaaa gccggcgaga agccgcagct
      241 aaagcgggag ctggccttgc ggggtgtact tgtcgacggc ctccggaagc tcgcgggaga
      301 gacgggcgag aagctcttcg cgaggcaggc cggtctgctt cgatagcgtg tccagcacgt
      361 cgggaccgat cgcctgctcc agtcgcggag ggtcgatcgg ctcgttcggg ccctgcctga
      421 cccacgactg cgccgtctca ccctgtccgg cctgcgtgaa gcgctcgaga agctcgctga
      481 ggccgctgcc gaggaaaccg ccggcgcccg cgccgccaag gccgccgccg agctgtccga
      541 gcaagccacc caggccgccc tgctgggctc cgccgccctg ctgcgctccg gcgcctcccg
      601 gcatgccccg tccgccaccg gcaccgccgg acatcgcttg gcccgctccg ccgagcaact
      661 cggcgagctt gtcccggttc tggtagcccg cgacggcgag cagcccgagg agggcggtca
      721 ttgatggaaa tccgcggctc atggcgtcgc tcctcatcct gtaagcggga gcaacagcgc
      781 gaggccgctt cggttccggg cgggcctgcc gcctcgtcag ctcctcacga gcacgacatg
      841 caggcggcgc ggaccgtgcg cgcccaggag cagggtctgc tcgatgtcgg ccgagcgcga
      901 cggaccggtg atgaagttga cggtgcgcgg catggccccg ctgtaggcct cgcgcacgcg
      961 cgcgagcacg gtctcgtagt cgccggcgac gtccttggcg gcgatgatga cgatgtggtt
     1021 gtccggcagg aagttcaccg tcgacgggtt ctcgggcccc gagaccagca caagcgtgcc
     1081 gctttcggcg acggcgccga aggcgtggct gacgccgttg aggtcgtgcc cgtcgctgcg
     1141 gccgcgcttg acctcgaggg aggtggcgtc ccacgccatg gcgcgcaggc gcaggtcgtc
     1201 gcccatgcgc acggacgccg gcaggttgtg gttgcgcagg aaggtcgcga cggcgtcggg
     1261 cacgtcggcc gtgctgtcga cctcggcgac cgtcgtgaag gccgcttccg cctgggcctt
     1321 gaacatggag atgagcgcgt cgcccgacag ctgcccgcgc tcggggatga tgccccgcgg
     1381 cgcccgcccg aggcggtcct cgaccacatg ccgccgcggg gcctcccggc ccttcacgcc
     1441 gagggagcgg cggatgttcg cgaagatgtc gtcgcgggcg gaggtgtcgc tcatgctacc
     1501 ctccggcgcg cccgctcctt gcgccagcgg gcctggaagg tgtctccctg cggcgccggg
     1561 aagtcgcggt tcttcgtcca gttgccggcc agcggcagcg cgccgaagcg gcctttcgag
     1621 cgcccgagga gcgcgaggcc gcccatcgcg gcccgcgtcg cgagccggta gagccccggc
     1681 cggcgggcga agaagcccca cagcttcagg ccggcgcgca ccgtcggagc ggtgaggtgg
     1741 cgctcgaact cgcgctcgcg ccagtggcgc atgagcttcg gcagcgggat gcgcaccggg
     1801 cacacggatt cgcagcggcc gcagaaggtc gaggcgttcg gcaggtgccc ggccttgtcg
     1861 acgccgatga gcgagggcgt cagcacggcg cccatggggc cgggatagac ccagccgtac
     1921 gcgtgcccgc cgacggcgtg gtagatcggg cagtggttca tgcacgcacc gcagcggatg
     1981 cagcgcagca tctcctggaa ggaggtgccg agcatggcgg agcggccgtt gtcgaggatc
     2041 acgacgtggt aggcctcggg gccgtcgacg tcttccggcc ggcgcgggcc cgtggacagg
     2101 gtggtataga ccgacatgtc ctggccggtg gccgagcggg cgagcacgcg caggatctgc
     2161 gacacgtcct cgagcgtcgg cacgatcttc tcgatcgatg cgaccacgat atgcacccgg
     2221 ggcaggattt gggtgaggtc gccgttgccc tcgttagtga cgatgacgga ggtgccggtc
     2281 tccgcgacca ggaaattggc gcccgtgacc ccgacatctg cggcaaggaa gcggtcg
//
LOCUS       DASQWN010000435         2296 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_670404, whole genome shotgun sequence.
ACCESSION   DASQWN010000435 DASQWN010000000
VERSION     DASQWN010000435.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2296)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2296)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2296
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_670404"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1256)
                     /locus_tag="VE686_08240"
     CDS             complement(<1..1256)
                     /locus_tag="VE686_08240"
                     /inference="COORDINATES: protein motif:HMM:NF014896.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S9 family peptidase"
                     /protein_id="HYY84474.1"
                     /translation="MEHDDNTIAPRPPRPRQEPLRRSFHGRELVDEYAWMRAPNWQAA
                     LDDPSLLPPDILEHLRAENAYAEWHLASGRELRERLVAEMRSYMDPRAAKPPVPHGPY
                     LYEARYGDGEHPVLVRRPLAGGPETLLLDCNAIARGQAFFKLGRWVVSPDHRLLAYAV
                     DTVGSEAYRIQFRDLLADSDLADALPETSGSMVWSRDARALTYVRRGPDLRPNRVMHH
                     RLGTVPGDDALIYVEADPAWGVWLGKTGSQRFGLVTLHNSDEGEVHLFDLAADLPVLR
                     LVEPRRSGLSYDVDDDGERLVIRTNAEGAEDRKLVTASPEAPGAEHWRDLVPHRPGVS
                     IVGYRCLARHIVRTERSDALVRIVVRDRAGAEHRVSVPDEVYSLRLEPGEDFDSDAVR
                     YTVSTPLRPSETYEYDMGARAGAVVWR"
     gene            1394..>2296
                     /locus_tag="VE686_08245"
     CDS             1394..>2296
                     /locus_tag="VE686_08245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014493786.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0042597 - periplasmic space [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tripartite tricarboxylate transporter substrate
                     binding protein"
                     /protein_id="HYY84475.1"
                     /translation="MLRFLTLGLVAAAAALAAPAAAQEYPTQTVKIIVPFGAGGPADV
                     YARVVGAHLAEALKRPVVIENRPGAGAVIGTNEAAKAPPDGHTLLMMSNTHTTNESLM
                     KQKGYELMRDFVPVAPVNSSDLLMVIHPSVPAKDLKEFIALLKEKPGALNYASSGPGT
                     PYHMAGELFKAMTGTNIVHVPHRGSGEARNSVIGGHVQMMIDAITTMAPQVQSGQLRA
                     LGATGLKRSEVLPDVPTVDEAGVPGYEAIIWLGIMAPAGTPKAIVDKLNAEINKVLNR
                     PDVKEAWAKQGVEPLVMSPAEFDKY"
BASE COUNT          356 a          810 c          811 g          319 t
ORIGIN      
        1 cgccacacca ccgcgccggc tcgcgcgccc atgtcgtact cgtaggtctc gctcggccgc
       61 agcggtgtcg agacggtgta gcgcaccgca tcgctgtcga aatcctcgcc cggctcgagg
      121 cgcaggctgt agacctcgtc cggcaccgag accctgtgct cggcgccggc gcggtcccgc
      181 accacaatac gcacgagggc gtccgaccgc tctgtccgca cgatgtgccg cgcaaggcat
      241 cggtagccga cgattgagac gcccggccgg tgcgggacga ggtcgcgcca atgttcggcg
      301 cccggcgcct cgggcgaggc ggtgacgagc ttgcggtcct ctgccccctc cgcattggtg
      361 cggatgacga gccgctcgcc gtcgtcgtcg acatcgtacg acaggccgct gcggcgcggc
      421 tcgacgaggc gcagcaccgg gaggtccgcc gcaagatcga agaggtggac ctcgccttcg
      481 tcgctgttgt gcaacgtgac gagcccgaag cgctgcgagc cggtcttgcc gagccacacg
      541 ccccaggccg ggtccgcctc gacgtagatc agggcgtcgt caccgggcac cgtcccgagc
      601 cggtgatgca tgacgcggtt ggggcgcagg tccgggccgc gccgcacgta agtgagcgcc
      661 cgcgcgtcgc ggctccacac catgctgccc gaggtctccg gcaacgcatc cgcgaggtcg
      721 ctgtcggcga ggagatcgcg gaactggatg cggtaggcct ccgatccgac cgtatccacc
      781 gcgtaggcaa gaagccggtg gtcgggcgac acgacccagc gccccagctt gaagaaggcc
      841 tggccgcgcg cgatcgcgtt gcagtcgaga agcagcgtct cgggccctcc cgcgagcggg
      901 cggcgcacca gcaccgggtg ctcgccatcg ccgtagcgcg cctcgtacag ataggggccg
      961 tgcgggaccg gcggtttcgc ggcccgaggg tccatgtagg agcgcatctc ggcgacgagc
     1021 cgctcgcgca gctcgcggcc gcttgccagg tgccactccg cgtaggcgtt ctcggcccgc
     1081 agatgctcga ggatatcggg cggcagcagg ctcgggtcgt cgagggcggc ctgccagttc
     1141 ggcgcccgca tccaggcgta ttcgtccacg agctcgcggc cgtggaagct gcgccggagc
     1201 ggctcctggc gcggccgcgg cgggcgaggc gcgatcgtgt tgtcgtcgtg ctccatggca
     1261 aatgcttacc cgacggccgc cccccgggcg aggcctcgtg gcccgccggg tcgcctcttg
     1321 ctgaggctcc gccgccgtgc gatcgattca gcgccaatga gctgacgggc acctcgagcg
     1381 accggagacc acaatgctgc gcttcctcac gctcgggctc gtcgccgcgg cggccgcgct
     1441 cgcggcaccc gctgccgcgc aggagtaccc gactcagacc gtcaagatca tcgtgccctt
     1501 cggcgcgggc ggcccggccg acgtctacgc gcgggtcgtc ggcgcgcacc tcgccgaggc
     1561 gctgaagcgc ccggtggtga tcgagaaccg gcccggggcg ggcgcggtga tcggcacgaa
     1621 cgaggccgca aaggcgccgc cggacgggca cacgctgctc atgatgtcga acacgcacac
     1681 cacgaacgag tcgctgatga agcagaaggg ctacgagctc atgcgcgact tcgtgccggt
     1741 cgcgccggtc aactcgtccg acctcctcat ggtcatccac ccgtccgtgc cggcgaagga
     1801 cctgaaggag ttcatcgcgc tcctcaagga gaagcccggg gcgctgaact atgcgtcctc
     1861 ggggcccggc acgccgtacc acatggccgg cgagctgttc aaagccatga ccgggaccaa
     1921 catcgtgcac gtgccgcacc gcggcagcgg cgaggcgcgc aacagcgtga tcggcggcca
     1981 cgtgcagatg atgatcgacg ccattaccac catggcgcct caggtccaga gcgggcagct
     2041 gcgggcgctc ggcgccacgg gcctcaagcg ctcggaggtg ctccctgacg tgccgaccgt
     2101 ggacgaggcg ggcgtccccg ggtacgaggc gatcatctgg ctcgggatca tggcgccggc
     2161 cggaacgcct aaagcgatcg tcgacaagct caacgccgag atcaacaagg tgctgaaccg
     2221 tcccgacgtg aaggaggcct gggccaagca gggcgtcgag ccgctggtca tgtcgccggc
     2281 cgagttcgac aaatat
//
LOCUS       DASQWN010000436         2237 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_433057, whole genome shotgun sequence.
ACCESSION   DASQWN010000436 DASQWN010000000
VERSION     DASQWN010000436.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2237)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2237)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2237
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_433057"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..648)
                     /locus_tag="VE686_08250"
     CDS             complement(<1..648)
                     /locus_tag="VE686_08250"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010686322.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HYY84476.1"
                     /translation="MTITADLTGKAVLVTGGASGIGLAAVELFARCGAQVAMNHLPDD
                     ARAAEEIARLSGERLNVVSAPGDVSKAGEAEAMVEKAIARLGRLDVLISNAGTPATRE
                     PIDFADLDAMTEEFWQAILQTNLLGVFRCAHGAAPALKATKGAIVNTASVAGLGRRGS
                     SLAYSASKAGVINVTRGLARALAPDVRVNAVAPGLVQTPWTNPWSDERKQGTIDRT"
     gene            complement(670..>2237)
                     /locus_tag="VE686_08255"
     CDS             complement(670..>2237)
                     /locus_tag="VE686_08255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008191391.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="long-chain fatty acid--CoA ligase"
                     /protein_id="HYY84477.1"
                     /translation="TEIVSVATEGGIHRTTYKDIHKRVAQLAHGLRALGVKPGDRVAT
                     LAWNGYRHFELYYAISGIGAVCHTINPRLAPDQLAYIVNHASDRVLFFDTPFAPLIAK
                     MRPHFPASLRYVALTDPAHAPTIEGTEVGVYDDLLAGRPETFTWPELDENTASALCYT
                     SGTTGEPKGVLYSHRSTVLQALSIAICSARSLGLGKRILPVVPLFHVNAWCLPYSAPL
                     TGASLVMPGIKLDGPSLFDLMDSEGVHNAWGVPTVWLGLLAEMRARGRKPRALEIMTI
                     GGSAAPKALIAAFEREFGIEAAHGWGMTEMSPVGTMGVLEPEMEALPFEERVQLKSYQ
                     GRRIFNVDMRIVDESGAPLPWDGQALGELVVRGPCVASAYFDNPEASARAVDAEGWFH
                     TGDVAKITPEGVLIIVDRAKDLVKSGGEWISSIDLENAAMACPGVAQCAVIAVPDPKW
                     DERPMLIVVKAPGATPAKEDILGFLASKVAKWQVPDDVVFVDALPMTATGKVSKLELR
                     KAFTEEKLTAAAE"
BASE COUNT          340 a          760 c          791 g          346 t
ORIGIN      
        1 ggtccggtcg atcgtgccct gcttgcgctc gtcggaccat ggattggtcc acggcgtctg
       61 cacgaggccg ggcgcgacgg cgttgacgcg cacgtccggc gcaagcgccc gcgcgaggcc
      121 gcgggtgacg ttgatgaccc cggccttgct cgccgaatag gcgaggctcg agccgcggcg
      181 gccgaggcct gccacggacg ccgtgttgac gatcgcgccc ttggtagcct tgagggcggg
      241 cgcggccccg tgggcgcagc ggaacacgcc gaggaggttc gtctgcagga tcgcctgcca
      301 gaattcctcc gtcatggcgt cgaggtcggc gaagtcgatg ggctcgcgcg tcgccggcgt
      361 cccggcgttg ctgatcagca catcgagccg tccgaggcgg gcgatcgcct tctcgaccat
      421 ggcctcggcc tcgccggcct tcgacacgtc gcccggtgcc gagaccacgt tcagtcgctc
      481 gcccgagagc cgcgcgatct cctccgccgc gcgcgcgtcg tcgggcaggt ggttcatggc
      541 gacctgggcg ccgcagcggg cgaaaagctc gaccgcggcg aggccgatgc ccgacgcgcc
      601 tcccgtgacg aggacggcct tgccggtgag gtccgcagtg attgtcatcg atctctcctt
      661 cgaagcccgc tattccgccg ccgcggtgag cttctcttcc gtgaaagcct tgcgcagctc
      721 gagcttcgag accttgccgg tggccgtcat cggcagcgca tcgacgaaaa ccacgtcgtc
      781 cggcacctgc catttcgcca ccttgctggc gaggaagccg aggatgtcct ccttcgcggg
      841 cgtcgcgccg ggagccttga cgacgatcag catcgggcgc tcgtcccact tcggatccgg
      901 gaccgcgatg acggcgcatt gcgcgacgcc gggacacgcc atggcggcgt tctcgagatc
      961 gatcgacgag atccactcgc cccccgactt caccaggtcc ttggcgcggt cgacgatgat
     1021 gagcacgccc tcgggggtga tcttcgcgac gtcgcccgta tggaaccagc cctccgcatc
     1081 gacggcacgg gcgctcgctt ccgggttgtc gaaatacgcc gacgcgacgc agggaccccg
     1141 caccacgagc tcgccaaggg cctgcccgtc ccatggcaac ggggcgccgc tctcgtcgac
     1201 gatgcgcatg tcgacgttga agatgcgccg gccctggtac gacttcagct gcacgcgctc
     1261 ctcgaacggc agcgcctcca tctcgggctc gaggaccccc atggtgccga cggggctcat
     1321 ctcggtcatg ccccagccgt gcgcagcctc gatgccgaac tcgcgctcga aggcggcgat
     1381 cagggccttc ggcgcggccg agccgccgat ggtcatgatc tcgagggcgc gaggcttgcg
     1441 gccgcgcgcg cgcatctcgg caagcaggcc gagccagacc gtcggcacgc cccaggcgtt
     1501 gtggacgccc tccgagtcca tcaggtcgaa caggctgggg ccgtcgagct tgatccccgg
     1561 catcaccagc gaggcgccgg tcagcggcgc cgagtagggc aggcaccacg cgttgacgtg
     1621 gaacaagggg acgaccggca ggatgcgctt gccgagcccg agcgagcgcg ccgagcagat
     1681 cgcgatcgac agggcctgca gcacggtcga gcggtgcgag tagagcacgc ccttgggctc
     1741 gcccgtcgtg ccggaggtgt agcagagcgc cgacgcggtg ttctcgtcga gctccggcca
     1801 ggtgaaggtc tcagggcggc cggccaggag gtcgtcgtag acgccgacct cggtgccctc
     1861 gatcgtgggc gcatgcgcag gatccgtgag cgccacatag cgcagagacg ccgggaagtg
     1921 cgggcgcatc ttggcgatga gaggcgcaaa gggcgtgtcg aagaacagga cccggtcgct
     1981 cgcatggttg acgatgtagg cgagctggtc cggggcaagg cgcggattga tggtgtggca
     2041 cacggcgccg atgccggaga tggcatagta cagctcgaaa tgccggtagc cgttccaggc
     2101 aagcgtcgca acccgatcgc cgggcttgac gccgagcgcg cgcaacccgt gtgccagctg
     2161 ggcgacccgc ttgtgaatat ccttgtaggt ggtccggtgg atgccgcctt ccgtcgcgac
     2221 cgaaacgatc tcggtgt
//
LOCUS       DASQWN010000437         2082 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1165937, whole genome shotgun sequence.
ACCESSION   DASQWN010000437 DASQWN010000000
VERSION     DASQWN010000437.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2082)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2082)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2082
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1165937"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(165..1601)
                     /gene="gltX"
                     /locus_tag="VE686_08260"
     CDS             complement(165..1601)
                     /gene="gltX"
                     /locus_tag="VE686_08260"
                     /EC_number="6.1.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012456913.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009332 - glutamate-tRNA ligase complex
                     [Evidence IEA];
                     GO_function: GO:0004818 - glutamate-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006424 - glutamyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate--tRNA ligase"
                     /protein_id="HYY84478.1"
                     /translation="MTETVVTRFAPSPTGFLHIGGARTALFNWLYARRHGGKMLLRIE
                     DTDRERSTEPAIKAILDGLSWLGLQWDGDVVYQFARASRHREVAEILLAAGRAYRCYA
                     SHQELEAMREAARRDGRPLRYDGRWRDRDPAEAPAGVKPVIRLKAPQDGETVVDDEVQ
                     GRVVWQNKDLDDLVLLRSDGNPTYMLAVVVDDHDMGVTHVIRGDDHLTNAARQTQIYQ
                     ALGWDVPRMAHIPLIHGADGAKLSKRHGALGVDAYRSLGYLPPALRNYLVRLGWSHGD
                     QEIFSTDEMIQAFDLASIGRSPARFDFAKLENLNGHYMRESADGDLVAALDEVMPELG
                     PPRSIGSRIEEPLRGKLLAAMPGLKERAKTLVELLDSAYYLYAKRPLALDDKARALLE
                     GGGRERLAGMAQRLEVVPEWAPPALEAAVRAHADALGVKLGQAAQPLRAALTGRATSP
                     GLFDVMAVLGREETLARLRDQDRATAAG"
     gene            1702..>2082
                     /locus_tag="VE686_08265"
     CDS             1702..>2082
                     /locus_tag="VE686_08265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007560678.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="competence protein ComEC"
                     /protein_id="HYY84479.1"
                     /translation="MAGSGQPGRSRKGARAAALAATGFGRAHDWRAALEQIPRFLRAC
                     VAEEVEQRRLFPWIAVAFGAGIVLFFSAEGRPALWAPLAGVALAGAAAVALRHRLWSF
                     AAAVAATAVFAGFAAAVVRTARVEA"
BASE COUNT          258 a          703 c          788 g          333 t
ORIGIN      
        1 atcctgccct ttcgttcggt cctaggatat ctagggtgtc cgcagggtcg cgaacatccc
       61 actttcggac gcctgcccag gatcggggcg gtgccgacaa acaccgatcc tgcctagctt
      121 atccgtcctg gccgtcaagc accgcgcggt gtcggaggtt ccggtcaccc tgcggcagtg
      181 gcgcgatctt gatcgcgcag gcgtgccagg gtctcctccc tcccgagaac ggccatgacg
      241 tcgaacagcc cgggcgaggt cgcgcgcccg gtaagcgcgg cccggagcgg ttgggccgcc
      301 tgcccgagct tcacgccgag cgcgtcggcg tgggcccgca ccgcggcctc gagcgccggc
      361 ggagcccact cggggaccac ttcgagacgc tgcgccatgc cggcgaggcg ctcgcgccct
      421 ccgccttcga gcagtgcgcg ggccttgtcg tcgagggcga gcgggcgctt ggcgtagagg
      481 tagtacgcgc tgtcgagaag ctcgacgagc gtcttggccc gctccttgag gcccggcatg
      541 gcggcgagaa gcttgccgcg gagcggctcc tcgatgcgcg agccgatgct gcgcggcggc
      601 ccgagctcgg gcatgacctc gtcgagcgcc gcgacgaggt ccccatcggc gctctcgcgc
      661 atgtagtggc cgttgaggtt ctcgagcttg gcgaagtcga agcgggccgg agagcggccg
      721 atgctcgcaa gatcgaaggc ctggatcatc tcgtcggtcg agaagatctc ctggtcgccg
      781 tggctccacc cgagccggac cagatagttg cgtagcgcgg gcggcaggta gccgagcgag
      841 cggtaggcgt cgacgccgag cgcgccgtgg cgcttcgaca gcttcgcgcc gtcggcgccg
      901 tggataaggg ggatgtgggc catgcgcggc acgtcccagc cgagtgcctg gtagatctgc
      961 gtctggcgcg ccgcgttggt gaggtggtcg tcgccgcgga tgacgtgggt cacgcccatg
     1021 tcgtggtcgt cgacgacgac ggcgagcatg taggtcgggt tgccgtcgga gcgcaggaga
     1081 acgaggtcgt cgaggtcctt gttctgccac acgacccgcc cctggacctc gtcgtcgacg
     1141 acggtctcac cgtcctgagg cgccttcagg cggatgacgg gcttcacgcc ggcaggcgcc
     1201 tcggcggggt cgcgatcgcg ccagcggccg tcgtagcgta ggggccggcc gtcgcgccgc
     1261 gccgcctcgc gcatggcctc gagctcctga tggctcgcgt agcagcggta ggcgcgcccc
     1321 gcggcgagca ggatctcggc gacctcgcgg tgccggctcg cgcgggcgaa ctggtagacg
     1381 acgtcgccgt cccactgaag cccaagccag gacaggccat cgaggatcgc cttgatggcg
     1441 ggctcggtcg agcgttcccg gtcggtgtcc tcgatgcgca ggagcatctt gccgccgtgg
     1501 cggcgggcgt agagccagtt gaacagcgcg gtgcgggcgc cgccgatgtg caggaacccg
     1561 gtcggggagg gcgcgaaacg ggtgacgacg gtctcggtca tgcggcctgg acgcttttga
     1621 tcgttggggg aaaggcgacc ccttcgcgcg cagcgccagc gtcgtctagc atgcatatcg
     1681 ggcatggctt gaggcgatgc aatggccggg agcgggcaac cgggccgatc tcgtaagggc
     1741 gcgcgcgccg ccgcgctcgc cgcgacgggc tttggccgcg cgcacgactg gcgcgccgcg
     1801 ctcgagcaga tcccgcggtt cctgcgggcc tgcgtcgccg aggaggtcga gcagcgccgg
     1861 ctgtttccct ggatcgcggt cgctttcggg gccggcatcg tcctgttctt ctcggccgag
     1921 ggccggccgg cgctgtgggc tccgctcgcc ggcgtcgcgc tcgcgggcgc cgccgccgtc
     1981 gccctgcgtc atcgcttgtg gagcttcgcc gccgccgtgg cggccaccgc ggtgtttgcg
     2041 ggctttgccg ccgccgtggt gcgcaccgcc cgcgtcgagg cg
//
LOCUS       DASQWN010000438         4281 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_771542, whole genome shotgun sequence.
ACCESSION   DASQWN010000438 DASQWN010000000
VERSION     DASQWN010000438.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 4281)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4281)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4281
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_771542"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1507)
                     /locus_tag="VE686_08270"
     CDS             complement(<1..1507)
                     /locus_tag="VE686_08270"
                     /EC_number="6.5.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015823435.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003910 - DNA ligase (ATP) activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cisplatin damage response ATP-dependent DNA
                     ligase"
                     /protein_id="HYY84480.1"
                     /translation="MNRFAALLDRLAYEPRRNAKIRLMADYFRHTPYPERGWALAAMT
                     GSLSFSNAKPGLIRGLIAERTDPVLFGLSWDYVGDLSETVALMWPKRPPPAEAGLGHN
                     NPPPSVPTLAEVIEGLSSTRKVELPGLVADWLDGLDETGRWALLKLITRELRIGVSAR
                     LAKTAVASLGDIPPDEVEHVWHGLAPPYEELFAWVEGRAPRPESRDPAPYRPSMLAHP
                     LEEEDFQKLDPAEFMAEWKWDGIRLQAVAGPAPDGRRARRLYSRTGEDVSGAFPDLLD
                     ALTFDAAIDGELLVVREGRVQSFNVLQQRLNRKAVTPKLLAEYPAHIRAYDILAEGDE
                     DLRTLPFSERRRRLEALLARVDNPRIDASPVIPFGTWEELTAARADPASVGAGEDAEA
                     IEGCMLKRADSPYVPGRPKGLWYKWKRDPYLVDAVLMYAARGSGKRSSFYSDYTFGCW
                     RDGPEGDELVPVGKAYFGFTDEELKQIDRYVRNHTANRFGPVREVAYAKDRG"
     gene            complement(1504..2544)
                     /locus_tag="VE686_08275"
     CDS             complement(1504..2544)
                     /locus_tag="VE686_08275"
                     /EC_number="3.1.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007559627.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ligase-associated DNA damage response
                     exonuclease"
                     /protein_id="HYY84481.1"
                     /translation="MPLTCTDILAQTPQGLYCALGDFHIDPIRPVPRALITHGHSDHA
                     RAGHGAVLATRETLRIMAARYGEEFAGTTQAVALREPMRIGEVSIRFVPAGHVLGSAQ
                     IVVEAGGCRVVISGDYKRGEDPTCLPFELVRCDVFITEATFGLPVFRHPDVRAEVRKL
                     LDSVALFPERTHVVGAYALGKAQRLMALIRAEGYHEPIYIHGALERLTELYRSEGIDL
                     GDIRKVPLGKRETLPGSIVLCPPSAMQEVWSRRFADPVTAFASGWMRVRARARQRGVE
                     LPLVVSDHVDWEDLCTTIIETGAGEVWVTHGQEDALVHWCVANRIPAKPLHMLGYGDE
                     EEAGLAPAESAA"
     gene            2679..2996
                     /locus_tag="VE686_08280"
     CDS             2679..2996
                     /locus_tag="VE686_08280"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY84482.1"
                     /translation="MKKLALALALTVVGATAASAQIEMRAGPGGVAIGSDVRRDRDWD
                     RGDRTTVIRREGRDWDRGDRTTVIRRDRDRVYSTGSTRCRTIIVKERDDMGRRVTKRI
                     ERC"
     gene            complement(2903..3439)
                     /locus_tag="VE686_08285"
     CDS             complement(2903..3439)
                     /locus_tag="VE686_08285"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY84483.1"
                     /translation="MTRVLWVFAWIAVAIWSVVAFSAYGLLDLFGGLLARNADTLASE
                     PGTVEWLFWITNGLKNIGLTAILLVWGLVSLAILAVPWTLSRLAGRATAPPPRDPRFV
                     ELSPTSTAPWEPRRHQVPDPGAWSSRRGAERKRGPEGPFSRRAWLDQQRSMRFVTRRP
                     MSSRSFTMIVRQRVEPVE"
     gene            complement(3436..3876)
                     /locus_tag="VE686_08290"
     CDS             complement(3436..3876)
                     /locus_tag="VE686_08290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009763677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4112 domain-containing protein"
                     /protein_id="HYY84484.1"
                     /translation="MAQAHPQFFAADYARDTGDEARVARLEALARLLDGAFAIPGTNQ
                     RVGLDAIIGLVPVLGSAATAVVSAYIIMEARRLGLPRWKVARMIGNLALDSMVGSIPI
                     AGNVFDVFFRSNQRNVRILLDHLGGRRSAREIDGTAVRVGERPR"
     gene            complement(3966..>4281)
                     /locus_tag="VE686_08295"
     CDS             complement(3966..>4281)
                     /locus_tag="VE686_08295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015822032.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="penicillin-binding protein 1C"
                     /protein_id="HYY84485.1"
                     /translation="PLRHVRRDVPKTIGATTTARLRIAFPLDGSRVDLGLTQAFAAAG
                     PLALKAAGGVPPLTWLVNGAPIGGPELRRQAAWTPDGAGFARVSVIDASGATDSVMVR
                     IE"
BASE COUNT          647 a         1473 c         1570 g          591 t
ORIGIN      
        1 gaccgcggtc cttcgcgtag gccacctccc gcaccgggcc gaagcggttg gcggtgtggt
       61 tgcggacgta gcggtcgatc tgcttcagct cctcgtcggt gaagccgaaa tacgccttgc
      121 cgacagggac gagctcgtcc ccctccggcc cgtcgcgcca gcagccgaag gtgtagtcgg
      181 agtagaagga cgagcgcttg cctgagccgc gcgccgcata catcagcacc gcgtcgacga
      241 ggtaggggtc gcgcttccac ttgtaccaga gtcccttcgg gcgcccgggc acataagggc
      301 tgtcggcgcg cttgagcatg cagccctcga tcgcctcggc gtcctcgccg gcgccgacgg
      361 acgccggatc ggcgcgggcg gcggtcagct cctcccaggt tccgaaaggg atcaccggcg
      421 aagcatcgat gcgagggttg tcgacgcgcg cgagcagcgc ctcgaggcgg cggcggcgct
      481 cggagaaggg cagggtgcgc agatcctcgt cgccctcggc gaggatgtcg taggcgcgga
      541 tgtgggccgg gtactcggcg aggagcttcg gggtgacggc cttccggttg aggcgctgct
      601 ggagcacgtt gaagctctgc acgcggccct cgcgcacgac gaggagctcg ccgtcgatgg
      661 cggcatcgaa ggtcagcgcg tcgaggaggt ccgggaaggc gcccgacacg tcctcgccgg
      721 tgcgggagta gagccgccgc gcgcggcggc cgtccggcgc cgggccggcg acggcctgca
      781 ggcggatgcc gtcccatttc cactcggcca tgaactcggc cgggtcgagc ttttggaaat
      841 cttcctcctc gagggggtgg gcgagcatgg aggggcggta cggggccggg tcgcgcgact
      901 ccggccgcgg cgcgcggccc tcgacccagg cgaacagctc ttcgtagggc ggcgccagcc
      961 cgtgccagac gtgctcgacc tcgtcgggag ggatgtcgcc caggctcgcc acggcggtct
     1021 tggcgagccg ggccgagacg ccgatgcgca gctcccgggt gatcagcttg aggagcgccc
     1081 agcgcccggt ctcgtcgagg ccgtcgagcc agtcggcgac gagcccgggc agctcgacct
     1141 tgcgcgtcga cgacagcccc tcgatcacct cggcgagggt ggggaccgag ggcggcgggt
     1201 tgttgtggcc gaggccggcc tctgccggag gggggcgttt cggccacatc agcgcgacgg
     1261 tctcggagag gtcgccgacg tagtcccagg acaggccgaa cagcaccgga tcggtgcgct
     1321 cggcgatgag gccgcggatg agccccggct tggcattgga gaacgacagc gatcccgtca
     1381 tggcggcgag cgcccagccg cgctccgggt agggcgtgtg gcggaagtag tcggccatga
     1441 gtcggatctt ggcattgcgc cggggctcgt aggcgagccg gtcgaggagc gcggcgaagc
     1501 ggttcatgcg gcgctctcag ccggcgcgag ccccgcctcc tcctcgtccc cgtagccgag
     1561 catgtgcagg ggcttggccg ggatgcggtt ggcgacgcac cagtgcacga gcgcgtcctc
     1621 ctgcccgtga gtgacccaga cctccccggc cccagtctcg atgatggtgg tgcagagatc
     1681 ctcccagtcg acatgatcgg agaccacgag gggcagttcg acgccgcgct ggcgggcgcg
     1741 ggcgcgcacc cgcatccagc ccgacgcgaa ggccgtcacc gggtcggcga agcgccgcga
     1801 ccagacctcc tgcatcgccg acggcgggca caggacgatc gagccgggca gggtctcgcg
     1861 cttccccaag gggaccttgc ggatgtcacc gaggtcgatg ccctcgctgc ggtagagctc
     1921 ggtcagccgc tcgagggcgc cgtggatgta gatcggctcg tggtatccct cggcccggat
     1981 cagcgccatg aggcgctgcg ccttgccgag cgcgtaggcg ccgacgacgt gcgtgcgctc
     2041 gggaaacagc gcgacggagt cgaggagctt gcgcacctcg gccctgacgt ccggatgccg
     2101 gaacaccggc agcccaaacg tcgcctccgt tatgaagacg tcgcaacgaa cgagctcgaa
     2161 cgggaggcag gtagggtcct cgccgcgctt gtagtcgccc gagatcacca cgcggcagcc
     2221 gcccgcctcc acgacgatct gggccgagcc gagcacgtgc ccggccggaa cgaagcggat
     2281 gctcacctcc ccgatgcgca tgggttcccg caaggcgact gcctgcgtcg tcccggcgaa
     2341 ctcctcgccg tagcgcgcgg ccatgatgcg cagggtctcg cgcgtggcga gaacggcgcc
     2401 gtggccggcg cgggcgtgat cggaatggcc gtgcgtgatc agcgcccgcg gcaccggccg
     2461 gatcggatcg atgtggaagt cgccgagcgc gcaatagagg ccttgcggcg tctgcgcgag
     2521 gatgtcggtg caggtcagcg gcattgccgc aaccatatgg gcacgatggc gaccccggcc
     2581 accccactcc tgtcaccagc gaccgccctc cggaaccgcc ttggccgcac cgcgttgccc
     2641 cgggacacgc aattcacccc ctcgcggaga gactccccat gaagaagctt gcccttgccc
     2701 tcgcgttgac ggtcgtcggc gccactgcgg cgtccgccca gatcgagatg cgcgccggcc
     2761 ccggcggcgt cgccatcggc agcgacgtgc gtcgtgaccg cgactgggat cgcggcgacc
     2821 gcacgaccgt cattcgtcgc gaaggccgcg actgggaccg cggcgaccgc accaccgtga
     2881 tccgccgcga ccgcgaccgc gtctattcca ccggctcgac ccgctgccgc acgatcatcg
     2941 tgaaggagcg cgacgacatg ggccgccgcg tcacgaagcg catcgagcgc tgctgatcga
     3001 gccacgctcg acgcgagaag gggccctcgg ggcccctctt tcgttcagcg ccgcggcggc
     3061 tcgaccaagc gcccgggtcg ggcacttggt ggcggcgtgg ttcccacggt gcggtactcg
     3121 tcggcgagag ctcgacgaag cgcgggtccc gcggcggcgg cgcggttgcc cgaccggcaa
     3181 ggcggctcaa ggtccacggc acggcgagaa ttgcgagcga gacgaggccc cacaccaaca
     3241 ggatggcggt caggccgatg ttcttgaggc cgttcgtgat ccagaatagc cattccaccg
     3301 tgcccggttc gctcgccagc gtgtcggcgt tgcgggcaag aaggcctcca aacaggtcga
     3361 gcaggccgta ggccgagaac gcgaccaccg accagattgc caccgcgatc caggcgaaaa
     3421 cccagagaac acgcgtcatc ggggtcgctc ccccacgcgc acggcggtgc cgtcgatctc
     3481 gcgcgcggag cggcgcccgc cgaggtgatc gagcaggatg cggacgttgc gctggttcga
     3541 gcggaagaaa acgtcgaaca cgttaccggc aatcgggatc gatcccacca tgctgtcgag
     3601 cgccaggttg ccgatcatgc gggcgacctt ccatcgcggc aggccgagcc ggcgggcttc
     3661 cataatgatg taggccgaca ccaccgccgt cgcggccgac ccgaggaccg gcacgagccc
     3721 gatgatcgcg tcgaggccga cgcgctggtt cgtcccgggg atcgcgaagg cgccgtcgag
     3781 gagccgtgcg agcgcctcga gacgcgccac cctcgcctcg tcgcccgtgt ctcgggcgta
     3841 gtcggcggcg aagaactgcg ggtgcgcctg ggccatctct ctcctccgga agccgtgtca
     3901 gaagatgggg gccgccgccc ttcgcgacaa gcaacgggcg ctggagcttt cgggagcggc
     3961 tgccgctact cgatccggac catgacgctg tccgtcgcgc cgctcgcgtc gatgaccgaa
     4021 acacgggcga agccggcgcc gtccggtgtc cacgccgcct gccggcgcag ctccggcccg
     4081 cctatggggg cgccgttgac gagccaggtt aggggcggca cgccgcccgc agccttcagg
     4141 gcgagcgggc cggccgccgc gaacgcctgc gtgaggccga gatcgacgcg ggagccgtcg
     4201 agcgggaagg cgatccgcag gcgggcagtt gttgtggccc cgatggtctt cggcacgtcg
     4261 cggcgcacgt ggcgtagggg c
//
LOCUS       DASQWN010000439         2318 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_135975, whole genome shotgun sequence.
ACCESSION   DASQWN010000439 DASQWN010000000
VERSION     DASQWN010000439.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2318)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2318)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2318
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_135975"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1846
                     /locus_tag="VE686_08300"
     CDS             <1..1846
                     /locus_tag="VE686_08300"
                     /inference="COORDINATES: protein motif:HMM:NF013676.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA];
                     GO_process: GO:0006313 - DNA transposition [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="Tn3 family transposase"
                     /protein_id="HYY84486.1"
                     /translation="TATQVDAVRQEMGRKSQQLARLLKTARAAEFVIPADHRLAAAFA
                     TLDSVAASSATTLPDGISQPFGPSWQGLIDQPDRVAALGCFRAATVMALKRAVRNRSV
                     SVDHSLSHRAPEDKLIPLKLWQRDRGRFIRDLNLPDSAEKYLQRLEAGLAAGLAALAE
                     AVEAGTVAIEGDELRVPRRKPQPKDPRVETARRVLGRAVGDAQLPEVLIEIDGLTRFS
                     WVLLGRPARSEQELVTLYASLLGLGSDLSVAELVRMVPSVAADSLAQMVVRIEAEGRF
                     RAANDAVLRFMRQHRIATLWGRGLFASADMMSLEATRYLWSARLDPRRRTYAVGTYAH
                     VLDQWGILYDQPIVLNRRQAGAAIEGALRQRQVDQLKRVAVDTHGFTHFAMTLAKVVQ
                     FDLCPRLAGLRKRRLYLPKGLTVPEILRPIVAETVSRRAISRGWDGLLRLGASVKHGW
                     YPATEALDRFGSAAAGDPVYEAGDALGKLLRTLYLCDYLSNPVFRTEILDLLNQGEAV
                     HSLQRAIHNGMIPAKHGRTTEQLGAISGALTLLANIVMAWNTHRLQAAIDLAPGDHAD
                     DVLSRLAPIGHKHINMRGILTFDLTRYGSSLLRQTPQAAQDRSSSEKS"
     gene            complement(2005..>2318)
                     /locus_tag="VE686_08305"
     CDS             complement(2005..>2318)
                     /locus_tag="VE686_08305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006201719.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="transposase domain-containing protein"
                     /protein_id="HYY84487.1"
                     /translation="LKRWESFTVFLRDGRVCLTNNAAERALRGIALGRKSWLFCGSDR
                     GGERTAVMYSLITTAKMNDVDPQAWLADVLARINDLPQTRLHELLPWEWKAIRERARA
                     A"
BASE COUNT          396 a          796 c          730 g          396 t
ORIGIN      
        1 cacggcgacc caggtcgacg ccgtgcgcca ggaaatgggg cgcaagtccc agcagctggc
       61 ccggctcctc aagacggcgc gtgcggcaga attcgtgatc cccgccgacc accggctcgc
      121 cgccgctttt gcgacgctcg attctgtcgc cgcgtcgtcc gccaccacct tgccagacgg
      181 gatctcccag ccgttcggtc cgtcctggca gggtctgatc gatcagccgg atcgggtggc
      241 cgcactcggt tgctttcgcg cggcaaccgt gatggccctg aagcgggcgg ttcgaaaccg
      301 gtcggtctcg gtcgatcaca gcctgtccca tcgggctccc gaggacaagc tgatcccctt
      361 gaaactctgg cagcgtgacc gggggcgctt catccgcgac ctcaacctgc cggacagcgc
      421 agagaaatat cttcagcgtc tggaagcggg cctggccgct ggacttgccg ccttggccga
      481 ggctgtcgag gctggcaccg tcgccatcga gggcgacgaa ctccgggtcc cccggcgcaa
      541 gccgcagcca aaggatccgc gcgtcgaaac ggcgcgccgg gtgctcgggc gtgccgtcgg
      601 tgacgcccag cttccggaag tcctgatcga gatcgacggc ctgacccggt tctcctgggt
      661 cctgctcggg cgtccggccc ggtcggagca ggaattggtg acgctctatg ccagcctgct
      721 cgggctgggc tccgaccttt ccgtggccga actcgtgcgc atggtgccgt cggtcgcggc
      781 cgacagcctc gcccagatgg tggtcaggat cgaagcggag ggaaggtttc gcgcggccaa
      841 tgacgcggtg ctgcgcttca tgcgccagca ccgcatcgcc accctgtggg ggcgcggcct
      901 gtttgcgtcc gcagacatga tgagcctcga ggcgacgcgc tatctctggt cggcccggct
      961 cgacccgcga cggcgcacct atgcggtcgg aacctatgcc catgtgctcg accagtgggg
     1021 tattctttat gatcaaccga tcgtcctgaa ccgccggcaa gcgggcgccg ccatcgaagg
     1081 cgcgctgcgc cagcggcagg tcgatcagct caagcgcgtc gcggtcgaca cccatggctt
     1141 cacgcatttt gcgatgacgc tcgccaaggt ggtgcaattc gatctgtgcc cgcgactggc
     1201 cgggctgaga aagcgacggc tctatctgcc gaaggggctc acagttccgg agatcttgcg
     1261 gccgatcgtg gccgagaccg tttcccgccg cgcgatcagc cggggttggg atggcttgct
     1321 ccggctcgga gcctccgtca agcacggctg gtacccggcg accgaggcgc tcgaccgctt
     1381 cggctcggcc gccgccggcg atcccgtcta cgaagccggt gacgccctgg gaaagctgct
     1441 gcgcaccctc tatctctgcg attacctcag caacccggta ttccggacgg aaatcctcga
     1501 tctgctcaac cagggcgagg ccgtccacag cctgcagcgc gccatccata acggcatgat
     1561 cccggcgaaa cacggccgca cgaccgagca actcggcgcc atctcggggg cgctcacctt
     1621 gctcgcgaac atcgtcatgg cctggaatac ccatcgcctc caggcggcga tcgacctggc
     1681 cccgggcgac catgccgacg atgtgttgag ccgtctcgca ccgatcgggc acaagcacat
     1741 caacatgcgc ggcatcctga cgttcgatct cacccggtac ggatcgagcc tgcttcgcca
     1801 gacgccacag gccgcccagg accgttcatc gagcgaaaaa agctgaatct cgcatgatat
     1861 catagggttg cacgaacagg cctggcgcaa cccattgaaa gccaacgctt tccagatcgg
     1921 cacttttggc acgcaggtta cggaaaggcc ggagcagctg ttccaggaac tgttcgcgaa
     1981 gcgttgaccc ggctggcgcc gaggtcacgc cgccctggcc cgctcgcgga ttgccttcca
     2041 ctcccagggc aacagctcgt gcagccgggt ctggggcagg tcgttgatcc gggccagcac
     2101 atcagcgagc cacgcctgcg gatcgacatc gttcattttt gctgtggtaa taaggctgta
     2161 catgactgcc gtccgctcgc cgccccgatc ggaaccacag aacagccatg acttacggcc
     2221 gagagcaata ccgcgcaacg ctcgttcagc ggcattgttc gtcaggcaca cccggccatc
     2281 acgcaggaac acggtgaagc tctcccagcg cttgagca
//
LOCUS       DASQWN010000440         2421 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_830664, whole genome shotgun sequence.
ACCESSION   DASQWN010000440 DASQWN010000000
VERSION     DASQWN010000440.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2421)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2421)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2421
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_830664"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(157..1749)
                     /gene="serA"
                     /locus_tag="VE686_08310"
     CDS             complement(157..1749)
                     /gene="serA"
                     /locus_tag="VE686_08310"
                     /EC_number="1.1.1.95"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018042763.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004617 - phosphoglycerate dehydrogenase
                     activity [Evidence IEA];
                     GO_process: GO:0006564 - L-serine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglycerate dehydrogenase"
                     /protein_id="HYY84488.1"
                     /translation="MPAPRVLISDALSPAAVQIFKDRGIEVDFQPDLGKDKDKLAAVI
                     GDYDGLAIRSATKVTAKILERATNLKVIGRAGIGVDNVEIPAATAKGVIVMNTPFGNS
                     ITTAEHAIALMFALARQIPQADASTQAGKWEKNRFMGVELTAKTLGVVGCGNIGAIVA
                     SRGLGLHMKVIAYDPFLSPERALEIGVEKVELDDLLRRADVITLHVPLTDRTRNILSA
                     EAIARTKRGVRIVNCARGGLVDEVALRAALDSGQVAGAAFDVFTVEPATENPLFGHPN
                     VVCTPHLGAATTEAQENVALQVAEQMSDYLLQGAIQNAVNFPSITAEEAPRLKPFVAL
                     AEKLGSFLGQLTEASVRGIRIEYEGAVAEMNTRALTAAAVTGVLRPFLQDINMVSAPV
                     VARERGITIEEVKRDNAARDYESFVRIIVDADDMPRHAGGTVFQDGKPRVTEIRDIAV
                     DAEFAAHMVYVRNADKPGFIGRFGMLLGEAGVNVATFALGRDRAGGDAICLVSVDEPV
                     LPELLRRIEEIPQVKRARAVSF"
     gene            complement(1903..>2421)
                     /locus_tag="VE686_08315"
     CDS             complement(1903..>2421)
                     /locus_tag="VE686_08315"
                     /EC_number="2.6.1.52"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012320562.1"
                     /note="catalyzes the formation of 3-phosphonooxypyruvate
                     and glutamate from O-phospho-L-serine and 2-oxoglutarate;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoserine aminotransferase"
                     /protein_id="HYY84489.1"
                     /translation="PPWPMPKIFRMTKGGKLIEGIFEGETINTPSMLAVEDYIDALEW
                     ARSIGGLKALIARADRNAEVIAHWAASTPWIENLAKDPATASNTSVCLSIVDPDVVAS
                     GPEAVAAVAKGIAGALEKHGVAYDIGAYRDAPPGLRIWCGATVESDDVEALTQWLDWA
                     FAQEQARLAEAA"
BASE COUNT          342 a          801 c          876 g          402 t
ORIGIN      
        1 gacgggcacg ctgacgcgca ctgttttgcc gacggttgaa gcacctgcgg gcatggcgag
       61 gctctccttg tcgcagccgg atggacgtcc ggcactcccg gagattaccc caagccgctt
      121 acagttgaaa gcgcggccgc acggtctcag agaggctcag aaactcaccg ccctcgcccg
      181 cttcacctgc gggatctcct cgatgcggcg caggagctcc ggcagcaccg gctcgtcgac
      241 ggagacgagg cagatggcgt cgccgccggc cctgtcgcgg ccgagggcga aggtggcgac
      301 gttgacgccg gcctcgccga gcagcatgcc gaaacggccg atgaagcccg gcttgtcggc
      361 gttgcgcacg tagaccatgt gcgccgcgaa ctcggcgtcg acggcgatgt cgcggatctc
      421 ggtgacgcgc ggcttgccgt cctggaacac ggtgccgccg gcgtggcgcg gcatgtcgtc
      481 ggcgtcgacg atgatgcgca cgaagctctc gtagtcgcgc gcggcgttgt cgcgcttcac
      541 ctcctcgatg gtaatgccgc gctcgcgcgc cacgaccggc gccgacacca tgttgatgtc
      601 ctgcaggaat ggccgcagga cccccgtcac ggccgccgcc gtcagcgcgc gcgtgttcat
      661 ttcggcgacg gcgccctcgt actcgatgcg gatgccgcgc acggaggcct ccgtgagctg
      721 accgagaaac gagccgagct tctcggcgag cgccacgaat ggcttcagcc gcggcgcctc
      781 ctcggcggtg atggagggga agttcacggc gttctggatc gcgccctgga gcaggtagtc
      841 ggacatctgc tcggcgacct gcagggcgac gttctcctgc gcctccgtcg tcgccgcgcc
      901 gaggtggggc gtgcacacca cgttcgggtg gccgaagagg gggttctcgg tcgccggctc
      961 gacggtgaaa acgtcgaacg ccgccccggc gacctggcct gagtcgagcg cggcccgcag
     1021 ggcgacctcg tccacgagac cgccgcgggc gcagttgacg atgcgcacgc cgcgcttcgt
     1081 cctggcgatc gcctccgccg acaggatgtt ccgggtgcgg tcggtgagcg gcacgtgcag
     1141 ggtgatcacg tcggcgcggc gcaggaggtc gtcgagctcg accttctcga cgccgatctc
     1201 gagggcgcgc tcagggctga ggaagggatc gtaggcgatg accttcatgt gcaggcctag
     1261 cccgcggctc gccacgatcg cgccgatgtt gccgcagccg acgacgccga gcgtcttcgc
     1321 cgtgagctcc acgcccatga agcggttctt ctcccatttg ccggcctgcg tggaggcgtc
     1381 ggcctgcggg atctggcgcg ccagcgcgaa catcagcgcg atggcgtgct cggccgtggt
     1441 gatggagttg ccgaagggtg tgttcatgac gatcacgccc ttcgcggtgg cggccgggat
     1501 ctcgacgttg tcgacgccga tgccggcgcg gccgatgacc ttgaggttcg tcgcgcgctc
     1561 gaggatcttg gccgtgacct tggtcgccga gcggatggcg aggccgtcgt agtcgccgat
     1621 tacggcggcg agcttgtcct tgtccttgcc gaggtcgggc tggaaatcga cctcgatgcc
     1681 gcgatccttg aagatctgca cggcggcggg cgacagggcg tcggagatga gaacgcgggg
     1741 agcgggcatg gggatctgct ttcctgttcg ccgtcatccc cgggccgcga agcggacccg
     1801 aggacctcgg gacgagaatg gcgcgataat cgggacggga cggcgcgtta cgcggcacgg
     1861 ggtcctcggg tccgccgtgc ggcccgagga tgacattcgt ggctacgccg cctcggcgag
     1921 cctggcctgc tcttgcgcga aggcccagtc gagccattgc gtgagggcct cgacgtcgtc
     1981 ggactcgaca gtggcgccgc accagatgcg caggcccggc ggggcgtcgc ggtaggcgcc
     2041 gatgtcgtag gcgacgccgt gcttctcaag agctccggcg atgcccttcg ccaccgccgc
     2101 gaccgcttcg ggcccgctcg cgaccacgtc gggatcgacg atcgacaggc acacgctggt
     2161 gttcgaggcc gtcgccggat ctttggcgag gttctcgatc cacggcgtcg aggcggccca
     2221 gtgggcgatg acctcggcgt tccggtcggc gcgcgcgatc agcgccttga ggccgccgat
     2281 ggatctcgcc cactcgagcg cgtcgatgta gtcctcgacg gccagcatgg agggcgtgtt
     2341 gatggtctcg ccctcgaaga tgccctcgat cagcttgccg cctttcgtca tgcggaagat
     2401 cttcggcatc ggccacggcg g
//
LOCUS       DASQWN010000441         2284 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_77766, whole genome shotgun sequence.
ACCESSION   DASQWN010000441 DASQWN010000000
VERSION     DASQWN010000441.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2284)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2284)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2284
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_77766"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..322
                     /locus_tag="VE686_08320"
     CDS             <1..322
                     /locus_tag="VE686_08320"
                     /EC_number="3.4.21.105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015931589.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004252 - serine-type endopeptidase
                     activity [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="rhomboid family intramembrane serine protease"
                     /protein_id="HYY84490.1"
                     /translation="SAVVSGMMAAATRFIFAPLPAFSWTPTAPHARPRQSLVELVANP
                     RATLFLGVWFLTNLGFGLFAAPLGVVDAGIAWEAHIGGFVAGLLLLPALDTVSSEQDP
                     RGLA"
     gene            386..817
                     /locus_tag="VE686_08325"
     CDS             386..817
                     /locus_tag="VE686_08325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012454115.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CBS domain-containing protein"
                     /protein_id="HYY84491.1"
                     /translation="MTVETILAQKGRSVATIDPARTLGEAARELSSRRIGAVVIVDGD
                     MTVLGILSERDIVRALAKRGSAALEEPVREYMTGRVVTCKGQAGINDVMQLMTDGKFR
                     HIPVVEDGRLAGIVSIGDIVKQRLAEIEAESQALREYIATA"
     gene            complement(836..1855)
                     /locus_tag="VE686_08330"
     CDS             complement(836..1855)
                     /locus_tag="VE686_08330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012333036.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006629 - lipid metabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="patatin-like phospholipase family protein"
                     /protein_id="HYY84492.1"
                     /translation="MFWDGVAQQAAGLSGGGIEALVSPPSPAVQERRTRLKIGLALGG
                     GAARGWSHIGVMRTLIQAGIVPDVIAGCSVGAVVGGCYAADKLDEVEAFARSLTKRRV
                     MGLLDFHMSGSGLIAGGRLKRLLDQDLGGQRVETLPLRFVTIATELGTGHEIWLTKGD
                     LISALRASYALPGVFDPVFFGGRWLMDGALVNPVPVTAARALGADIVICVNLNGDIKV
                     RGTVIQSHGGDAVDEIAEAVVEGAPRRWALFGQGRPSDRPVPQAPGITAVMIDAFNIT
                     QDRIARSRLAGDPPDVMIAPKLSAIGLFEFHRAAESIDLGRQATERVLPDIMEMIQDA
                     AATVA"
     gene            2149..>2284
                     /locus_tag="VE686_08335"
     CDS             2149..>2284
                     /locus_tag="VE686_08335"
                     /EC_number="3.4.11.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019403145.1"
                     /note="catalyzes the removal of N-terminal amino acids
                     from peptides and arylamides; generally Co(II) however
                     activity has been shown for some methionine
                     aminopeptidases with Zn, Fe, or Mnin Bacillus subtilis the
                     protein in this cluster is considered non-essential;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I methionyl aminopeptidase"
                     /protein_id="HYY84493.1"
                     /translation="MTVSSDDELTALRRIGRIVGDTLEAMRKAIEPGMTTLELDQVGR
                     G"
BASE COUNT          350 a          792 c          802 g          340 t
ORIGIN      
        1 gtcggccgtc gtctccggca tgatggcggc ggccacccgc ttcatctttg ccccgctgcc
       61 cgccttctcg tggacgccga ccgcgcccca cgcgcgcccg cgccagtctc tcgtcgagct
      121 tgtcgccaat ccccgtgcga ccctgttcct cggcgtgtgg ttcctgacga acctcggctt
      181 cggcctcttc gccgcgccgc tcggcgtcgt ggacgcgggc atcgcctggg aggcgcacat
      241 cggcggcttc gtggccggcc tgctgctcct gcccgccctc gacacggtgt cgtcggagca
      301 ggatccgcga ggccttgcgt gacttgtcag ccgcgcgaac ctctcccaca atcgccggcc
      361 gcgcagagcg ctcaaggagc cagccatgac ggtcgagacc atcctcgccc agaaggggcg
      421 cagtgtcgcg acgatcgatc ccgcccgcac cctcggcgag gccgcccgcg agctctcgtc
      481 ccggcgcatc ggcgcggtcg tcatcgtcga cggcgacatg acggtgctcg gcatcctgtc
      541 ggagcgcgac atcgtccggg cccttgcgaa gcgggggagc gccgccctcg aggagccggt
      601 gcgtgagtac atgacgggcc gggttgtgac gtgcaaaggg caggccggca tcaacgacgt
      661 gatgcagctc atgaccgacg gcaagttccg tcacatcccg gtggtggagg acgggcgcct
      721 cgccggcatc gtgtccatcg gcgacatcgt caagcagcgc ctcgccgaga tcgaggcgga
      781 gagccaggcc ttgcgcgagt acatcgcgac ggcctgagcg gctgagccgt cgcgatcagg
      841 cgacggtcgc ggccgcgtcc tggatcattt ccatgatgtc cggcagcacg cgctctgtcg
      901 cctgccgccc aaggtcgatc gactccgcgg cgcggtggaa ctcgaacagg ccgatggcgg
      961 agagcttcgg ggcgatcatc acgtcgggcg ggtcgccggc aagacgcgat cgggcaatgc
     1021 ggtcttgggt gatgttgaag gcatcgatca tcacggccgt aatgccgggg gcctgcggca
     1081 caggccgatc gctgggccgc ccttggccga agagggccca gcgccgcggc gcgccctcga
     1141 cgacggcctc ggcgatctcg tccacggcgt cgccgccgtg cgattggatc acggtcccgc
     1201 gcaccttgat gtcgccgttg agattgacgc agatcacgat gtcggccccg agcgcacgag
     1261 cggccgtgac cgggacgggg ttcacgaggg cgccgtccat gagccagcgg ccgccgaaga
     1321 acaccgggtc gaagaccccg ggcagcgcgt aggacgcgcg cagggccgag atgaggtcgc
     1381 ccttggtcag ccagatctcg tgcccggtcc cgagctcggt cgcgatggta acgaaccgca
     1441 gcggcaaggt ctcgacgcgt tggccgccga gatcctggtc gagcaggcgc ttgaggcgtc
     1501 cgccggcgat gaggcccgag ccgctcatgt ggaagtcgag aaggcccatg acgcgacgct
     1561 tggtgagcga gcgcgcgaag gcttcgacct cgtcgagctt gtcggccgcg tagcagcccc
     1621 cgacgacggc gccgacggag catccggcga tcacgtcagg cacgatgccc gcctggatca
     1681 gcgtgcgcat gacgccgata tgggaccagc cgcgggcagc gccgccgccg agagcaaggc
     1741 cgatcttgag gcgtgtgcgc cgctcctgca cggccgggga gggcggcgac accagggcct
     1801 cgatgccgcc gccgctcaag cccgccgcct gctgcgctac gccgtcccag aacatcgagc
     1861 ttttcccgac ttatcgcgag caatctgaca cggaggcctg aaggtctcgt gtacaaacgc
     1921 ccaagctcgg ctgttttgtt ccgccgcggg gctgcgttgc gcggggcgct accccgccgg
     1981 cgactggacg ccggtcatcg cctcgatgga ggaagcggag cttcgggttc gcaccatcgg
     2041 tcggcttccg tatacgcaag ccatgctagg ccgacgaggc gctgtcgccc cggcgactgc
     2101 ccgcaagagc gcccggtcga gcccctccgg ctctgcgaaa ggaacgccat gacggtgtcg
     2161 agcgacgacg agttgacggc gttgagacgg atcgggcgaa tcgtcggcga cacgctggag
     2221 gcgatgcgca aagccatcga gcccggcatg accacgctcg aactcgacca ggtcgggcgc
     2281 ggat
//
LOCUS       DASQWN010000442         2414 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_136150, whole genome shotgun sequence.
ACCESSION   DASQWN010000442 DASQWN010000000
VERSION     DASQWN010000442.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2414)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2414)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2414
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_136150"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..835)
                     /locus_tag="VE686_08340"
     CDS             complement(<1..835)
                     /locus_tag="VE686_08340"
                     /inference="COORDINATES: protein motif:HMM:NF021589.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane beta-barrel protein"
                     /protein_id="HYY84494.1"
                     /translation="MQRPTQAPTVSPALTPDVQAPVVGIPDPLRPLALPRPKRPDRDD
                     PYGQLGIRSGGLMFYPAIQQDFGYDTNPNRLPSSPEGSWVSRTEGALRLQSDWLVHEL
                     TADLRGAYSVYPDVPSADRPEGSGRVGLRLDATRDTSINLEGRFLVETQRPGSPELNA
                     AVGERPLYGTYGASAGVMQRFNRLELGLKGTIDHAFFEDARLANGTILSQADREFTQY
                     GVQARAAYELTPGVKPFIEGLADTREYDQTIDSAGFRRSSKAIGARLGSTFELTRLIT
                     GE"
     gene            1245..2240
                     /locus_tag="VE686_08345"
     CDS             1245..2240
                     /locus_tag="VE686_08345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011443405.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016853 - isomerase activity [Evidence
                     IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="KpsF/GutQ family sugar-phosphate isomerase"
                     /protein_id="HYY84495.1"
                     /translation="MALPRPKAESTADAIASAQRTLAAERDGLAALIDAVGNGLGAPF
                     VAAVYLIARAKGRVVVTGIGKSGHVARKVAATLASTGTPAHYVHPAEASHGDLGMVQP
                     EDVILALSWSGETTELADLIAYAKRFRVGLVGITANAASTLARQANIALVLPKAQEAC
                     PNGLAPTTSTTMQLALGDALAVALLEQRGFTAHDFRVFHPGGKLGAQLKLVRDVMHVG
                     ERLPLVSAGARMDAAIEEISRKGFGSVIVVNEDGTLAGIVTDGDLRRNLRPDLGTLPV
                     EAIMSRKPRTIAPDDLVAKALEIQESAKITALIVAEDGRPVGLVHYLDLLRIGVA"
BASE COUNT          322 a          846 c          897 g          349 t
ORIGIN      
        1 cctcgccggt gatgagccgc gtcagctcga acgtcgagcc gagccgcgcc ccgatggcct
       61 tcgagctgcg ccggaagccc gccgagtcga tcgtctggtc gtactcgcgg gtgtccgcga
      121 ggccctcgat gaagggcttc acccctggcg tcagctcgta ggcggcgcgc gcctggacgc
      181 cgtactgcgt gaactcgcgg tcggcctggc tcaggatggt gccgttggcg agacgggcgt
      241 cctcgaagaa cgcgtggtcg atggtgccct tgaggccgag ctcgaggcgg ttgaagcgct
      301 gcatcacccc ggcgctcgca ccgtaggtgc cgtatagggg ccgttcaccg acggcggcgt
      361 tgagctccgg gctgcccggc ctctgcgttt ccacgaggaa ccggccctcg agattgatgc
      421 tcgtgtcgcg ggtggcgtcg aggcgcaggc cgacccggcc ggagccctct gggcggtcgg
      481 ctgacggcac gtccggatag acgctgtagg cgccgcgcag atcggccgtg agctcgtgca
      541 cgagccagtc gctctgcagg cgcagggcgc cctcggtgcg cgagacccag gagccttccg
      601 ggctcgacgg cagccggttc ggattggtgt cgtagccgaa gtcctgctgg atggccgggt
      661 agaacatcag gccgcccgag cggatgccga gctgcccgta ggggtcgtcg cggtcgggcc
      721 gcttggggcg cggcagggcg aggggccgca gcggatcggg gataccgacg acgggtgcct
      781 gaacgtctgg cgtcagggcc ggtgagaccg tgggcgcctg cgtcggccgc tgcacgatct
      841 cttttgcggg ctggcgcgtg cgtcgggcct gcgtggctct cgcccgccgg gtggcgccga
      901 tttgcgttcc gggcagcggg gcgacgtcgg ggcgagggct cccgggcggg gcgggctgtc
      961 cagagccgcg gaactccggc ccgggcgaga gaggcgcggg ctgggcgaca gcggttgcca
     1021 ccagcgcaag cgtcgccgcg ccggcgagga gcgcggcttt ggtcaggctg cgggaggtcg
     1081 gctgcgtcat gctcgcgggg gcagggcggc tccggacagg aaggtccggg ctcagaaatc
     1141 tcggttaatg gacctacaac cgatgcggtt aagatcccgt aagcggctgg gggtgacgca
     1201 gtccgcgggt ggatgctccg gctctcgccg tgctacacgg cggcatggct ctcccgcgcc
     1261 ccaaggccga atcgaccgcc gatgccatcg cgtccgcgca gcgcaccctt gcggcagagc
     1321 gcgacggcct cgcggcgctg atcgacgccg tcggcaacgg cctcggcgcg cccttcgtgg
     1381 ccgccgtcta cctcatcgct cgcgccaagg ggcgcgtcgt cgtcaccggc atcggcaagt
     1441 cgggccatgt ggcgcgcaag gtcgccgcga ccctcgcctc gacgggcacg ccggcgcact
     1501 acgtccatcc ggccgaggcg agccacggcg acctcggcat ggtgcagccc gaggacgtca
     1561 tcctggcgct gtcgtggtcg ggcgagacga cggagcttgc cgacctcatc gcctacgcca
     1621 agcgttttcg ggtcggcctc gtcggcatca cggcgaacgc cgcctcgacg ctggcccgcc
     1681 aggcgaacat cgcgctcgtg ctgccgaagg cgcaggaggc ctgccccaac ggccttgcgc
     1741 cgaccacctc gacgaccatg cagctggcgc tcggcgacgc cctcgcggtg gcgcttctcg
     1801 agcagcgcgg cttcacggcg cacgacttcc gcgtcttcca tccgggcggc aagctcgggg
     1861 cgcagctcaa gcttgtgcgc gacgtcatgc acgtcggcga gcggcttccg ctggtcagcg
     1921 ccggcgcgcg catggacgcc gccatcgagg agatcagccg gaagggtttc ggcagcgtca
     1981 tcgtcgtcaa cgaggacggc acgctcgccg gcatcgtcac ggacggcgac ctgcgccgca
     2041 acctgcgccc cgacctcgga acgctgcccg tcgaggccat catgagccgc aagccgcgca
     2101 ccatcgcgcc cgacgacctc gtagccaagg cgctcgagat ccaggagagc gccaagatca
     2161 ccgcgctgat agtcgccgag gacggccgcc ccgtcggcct cgtccactac ctcgacctct
     2221 tgcgtatagg cgtggcgtaa gcggccctcc ctccctcccc cgcccgcgtc agcgggtgcg
     2281 gggagggacg actcgggccc aaaagggccc gagcgagggt ggggggcgag tcggcttggt
     2341 cctgagcgcg gcagcgccgg cggtggccct cgcccggtcg cggctgacgc cgcgactcga
     2401 cctctcccgc acat
//
LOCUS       DASQWN010000443         8817 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1167083, whole genome shotgun sequence.
ACCESSION   DASQWN010000443 DASQWN010000000
VERSION     DASQWN010000443.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 8817)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8817)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8817
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1167083"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..2100
                     /gene="infB"
                     /locus_tag="VE686_08350"
     CDS             <1..2100
                     /gene="infB"
                     /locus_tag="VE686_08350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009490688.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003743 - translation initiation factor
                     activity [Evidence IEA];
                     GO_process: GO:0006413 - translational initiation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-2"
                     /protein_id="HYY84496.1"
                     /translation="SLDQMGRSAPASDTASPATARPGPVMRAPGRPAEAAEEETETKR
                     IIRRPGMPMKIITPPKTPKAPGGDRNRGRLTIATATGGEDERTRSVASFRRRMQRLTG
                     HRNAEPKEKLAREVTIPETITIQELANRMSERGVDVIRLLMRQGEMYKITDVIDADTA
                     QLVAEEMGHAVKRVAESDVEEGLFDTPDTEGDLVSRPPVVTIMGHVDHGKTSLLDAIR
                     KTNVVSGEAGGITQHIGAYQVTSPLGGKITFIDTPGHAAFTAMRARGAKVTDIVVLVV
                     AADDGVMPQTIEAIAHAKAANVPLIVAINKIDKPDANPQRVRTELLQHEIVVESLGGE
                     TLEFEVSALKGTGLDTLLEGLQLQAEILDLRVDAGRSAEGTVIEAKLDRGRGPVATVL
                     VQRGTLRTGDIVVAGAEWGRVRALVNDQGDNVKEAGPSVPVEVLGFNGTPEAGDRVAV
                     VENEARAREVTEYRSRQKRDRQAARAGAGGRSLAEMMRDLKEGAGRKEFALVVKGDVQ
                     GSVEAIVGSLEKLGTEEVTARVLHSGVGGITESDVALAEASGAIVVGFNVRAHKEARQ
                     AAERLGVEIRYYNIIYDLVDDVKQAMSGLLAPTLREERLGEAQVLEVFNVSKVGKVAG
                     CRVLDGVVQRGAHVRLIRDNVVIHEGRLSQLKRFKDDAREVTAGQECGMAFENYQDMR
                     TGDVIECYNVTEVQRTL"
     gene            2248..2661
                     /gene="rbfA"
                     /locus_tag="VE686_08355"
     CDS             2248..2661
                     /gene="rbfA"
                     /locus_tag="VE686_08355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019905268.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006364 - rRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosome-binding factor RbfA"
                     /protein_id="HYY84497.1"
                     /translation="MPKRFENPAGPSQRQQRVAELVRHALAEVLSRGDIQDPVLTKHV
                     VTIPEVRMSPDLKVATAFVMPLGGRDEAAVLDALDRNRKALRQEVAHRVNLKFAPDLR
                     FRRDDSFDEAAKIDALLRSEKVRKDTDKLPENDEE"
     gene            2764..3720
                     /gene="truB"
                     /locus_tag="VE686_08360"
     CDS             2764..3720
                     /gene="truB"
                     /locus_tag="VE686_08360"
                     /EC_number="5.4.99.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007559688.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004730 - pseudouridylate synthase
                     activity [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(55) synthase TruB"
                     /protein_id="HYY84498.1"
                     /translation="MTEPTEHRPPREPRPPREQRPKKRDVHGWLVLDKGVGMTSTHAV
                     AVAKRTLNAKKAGHAGTLDPLASGILPIALGEATKTVPFVMDGQKSYVFTVTWGVETE
                     TDDAEGRPVQATNRAPSADEVSALLPRFTGSIEQVPPRYSAIKIQGERAYDLARDGEM
                     VELQPRTVEIERLALLSHDGDRSVLAADCGKGTYVRALARDMGRALGCLGHVSALRRT
                     RVGPFTEDAAVTVEQLEQQAAGGDLAHVLRPVDAALSEVPSVAVSRDLAGRLMRGQSV
                     ILRGRDAPLGGKLYATLNGVLVAVGDVERGELVPHRVFNLGA"
     gene            complement(3799..5064)
                     /gene="lysA"
                     /locus_tag="VE686_08365"
     CDS             complement(3799..5064)
                     /gene="lysA"
                     /locus_tag="VE686_08365"
                     /EC_number="4.1.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003597650.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008836 - diaminopimelate decarboxylase
                     activity [Evidence IEA];
                     GO_process: GO:0009089 - lysine biosynthetic process via
                     diaminopimelate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="diaminopimelate decarboxylase"
                     /protein_id="HYY84499.1"
                     /translation="MHHFEYRGGILHAEDVDLSALAERVGTPFYCYSTATLERHYTVF
                     AEAFAERDALICYAVKANSNQAVLRTLARLGAGMDIVSGGELRRALSAGVPGERIVFS
                     GIAKTRDEMAAALDAGILCFNVESEPELAMLAEVARAKGVVAPVSIRVNPDVDARTHH
                     KISTGKSENKFGIPISRARAVYAQAARLGGLKVTGVDTHIGSQITELEPFDNATRLLV
                     ELARDLMADGHRLTHIDVGGGLGVPYHDDEAPPLPAAYAEVVKRNTEGLGLKLIFEIG
                     RLIAGNAGILVTRVLYVKHGEGKTFVIVDAGMNDLIRPTLYDAYHAIRPVTEPRADAS
                     RIVVDVVGPVCESGDYLALDRDLPEVAAGDLLAIMTAGAYGAVQGSTYNTRLPAPEVL
                     VRGDAASVVRARPTYDELIGLDRVPPWIT"
     gene            complement(5074..5424)
                     /locus_tag="VE686_08370"
     CDS             complement(5074..5424)
                     /locus_tag="VE686_08370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007567256.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein"
                     /protein_id="HYY84500.1"
                     /translation="MSLPLSSAGRAFVLASLLVLALSACGRRGRLEAPPDPIAVAAEQ
                     QRQAERDRIKGQRGGASAAIAAPTPGAAQADDDEEEEEVRGPAIAPTPAPRTKTPRRG
                     YTIPKEPFILDPLL"
     gene            5821..6462
                     /locus_tag="VE686_08375"
     CDS             5821..6462
                     /locus_tag="VE686_08375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015933597.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TlpA disulfide reductase family protein"
                     /protein_id="HYY84501.1"
                     /translation="MPSLRRSVPLLALAATAAVALGAASIYGTGPLSGSGECRAARAV
                     SARIAPLAKGEVAALSALSTPKPAPAIAFNAPDGRPIDLAALNGKVRLVNLWATWCVP
                     CRQEMPALDQLQAEFGGPEFEVVAVNVDTRNLERPRTWLQENGVKRLAYYADPSGKVM
                     QVLQRSGDLVGLPTSILIDRDGCQIAVLKGPAEWASADAKALIAAALARPAGS"
     gene            complement(6469..7128)
                     /locus_tag="VE686_08380"
     CDS             complement(6469..7128)
                     /locus_tag="VE686_08380"
                     /inference="COORDINATES: protein motif:HMM:NF012273.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_process: GO:0006749 - glutathione metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione S-transferase family protein"
                     /protein_id="HYY84502.1"
                     /translation="MIVLHGSGGSPYVTRVVMQAAAKNIDLELRPANLADPEFRRMNP
                     IGKMPVLEHDGFVLPESYVICEYLEDVFPTPSLRGASAHDRARVRLIARVVDLYCAGI
                     FPILRAAADPTFTIEASERATLDKGLDALDTFLSGDGWAVGGAMSLADCALATWLYYG
                     NKLTRGGDDALTKRPKLARYVAFVSDQPLVQKVQAEMDEAFRAFMARWKAEQAAMNAS
                     T"
     gene            7333..7533
                     /gene="rpmI"
                     /locus_tag="VE686_08385"
     CDS             7333..7533
                     /gene="rpmI"
                     /locus_tag="VE686_08385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012335024.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L35"
                     /protein_id="HYY84503.1"
                     /translation="MPKLKTKSGAKKRFKITGTGKVMYAQAGKRHGMIKRTKKQIRNL
                     RGTTTMFEGDAYNVKKYFLPNG"
     gene            7582..7962
                     /gene="rplT"
                     /locus_tag="VE686_08390"
     CDS             7582..7962
                     /gene="rplT"
                     /locus_tag="VE686_08390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018389391.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L20"
                     /protein_id="HYY84504.1"
                     /translation="MARVKRGVTSHAKHKKVLKAAKGYYGRRKNTIRIAKQAVEKAMQ
                     YAYRDRKNKKRTFRALWIQRLNAAVREHGLTYSRFIDGLGKAGVEVDRKLLSEMAIHE
                     PAAFAAYVERAKASLPADQAQQAA"
     gene            8111..>8817
                     /locus_tag="VE686_08395"
     CDS             8111..>8817
                     /locus_tag="VE686_08395"
                     /EC_number="6.1.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018899278.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0000049 - tRNA binding [Evidence IEA];
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0004826 - phenylalanine-tRNA ligase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA];
                     GO_process: GO:0006432 - phenylalanyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phenylalanine--tRNA ligase subunit alpha"
                     /protein_id="HYY84505.1"
                     /translation="MTDLSTLERDLLGQVGAAPDEAALEALRVAALGKKGTISELLKT
                     LGSMTPEERREKGPLINGLRDNVQGAIARRKGALAEAALDARLQAERIDVTLPVREGP
                     ETRGRIHPITQVMDELSAIFADMGFSIAEGPDIETDYLNFTALNFPEGHPAREMHDTF
                     FLRPDASGDRKVLRTHTSPVQIRTMKSVAPPIRVICPGRTYRHDSDQTHTPMFHQVEG
                     LVIDREAHIGHLKWILE"
BASE COUNT         1506 a         3011 c         3012 g         1288 t
ORIGIN      
        1 agcctcgacc aaatgggccg ctccgcgccg gcgtcggaca ccgcgtcgcc cgcgacggcg
       61 cggccgggtc ctgtcatgcg cgcgcccggc cgtcccgcgg aggcggccga ggaagagacc
      121 gagacgaagc gcatcatccg ccgtcccggc atgccgatga agatcatcac gccgcccaag
      181 acgccgaagg cgcccggcgg cgaccgcaac cgcggccggc tcaccatcgc tacggctacg
      241 ggcggcgagg acgagcgcac gcgctcggtg gcctcattcc gccgccgcat gcagcgtctc
      301 accgggcacc ggaacgcgga gccgaaggag aagctcgccc gcgaggtgac gatcccggag
      361 acgatcacca tccaggaact cgcgaaccgc atgtcggagc gcggcgtcga cgtgatccgc
      421 ctcctcatgc gtcagggcga gatgtataag atcaccgacg tgatcgacgc cgacacagcc
      481 cagctcgtgg ccgaggagat gggccacgcg gtcaagcgcg tcgccgagtc ggacgtcgag
      541 gaaggcctgt tcgacacccc agacaccgag ggcgatcttg tctcgcgtcc gcccgtggtg
      601 accatcatgg gccacgtcga ccacggcaag acctcgctcc ttgacgccat ccgcaagacc
      661 aacgtggtct cgggcgaggc gggcggcatc acgcagcaca tcggcgccta ccaggtgacc
      721 tcgccgctcg gcggcaagat taccttcatc gacacgccgg gccacgcggc cttcacggcg
      781 atgcgcgccc gtggcgccaa ggtgacggac atcgtcgtcc tcgtcgtggc ggcggacgac
      841 ggcgtcatgc cgcagaccat cgaggcgatc gctcacgcga aggcagcaaa cgtcccgctg
      901 attgtggcga tcaacaagat cgacaagccc gacgccaacc cgcagcgggt ccgtaccgaa
      961 ctcctgcagc acgagatcgt cgtcgagtcc ctcggcggcg agacccttga gttcgaggtt
     1021 tcggcgctca agggcaccgg cctcgatacc ttgcttgagg gcctgcagct gcaggccgag
     1081 atcctcgacc tccgagtcga cgcaggccgg tcggccgagg gcactgtcat cgaggcgaag
     1141 ctcgaccgtg gccgcgggcc ggtggcgacc gtccttgtcc agcgcggcac cctgcgcact
     1201 ggcgacatcg tcgtcgcggg ggcggagtgg gggcgcgtcc gagcgctggt taacgaccag
     1261 ggcgacaacg tgaaggaggc aggcccctcc gtccccgtgg aggtgctcgg cttcaacggc
     1321 actccggagg cgggcgaccg cgtcgccgtg gtcgagaacg aggcccgcgc acgtgaagtc
     1381 accgagtacc gctcgcggca gaagcgtgat cgtcaggcag cccgcgcggg cgccggcggc
     1441 cgttcgctgg ccgagatgat gcgggacctc aaggagggtg ccggccggaa ggagttcgcg
     1501 cttgtcgtca agggcgacgt gcaggggtcg gtcgaagcca tcgttggctc cctcgagaag
     1561 cttgggaccg aggaggtcac ggcgcgggtg cttcattcgg gcgtcggcgg catcaccgaa
     1621 tccgacgtcg ccctggcgga ggcctccggc gcaatcgtgg tcggcttcaa cgtgcgcgcg
     1681 cacaaagaag cgcgtcaggc ggccgagcgg cttggcgttg agatccgcta ttacaatatc
     1741 atctacgacc tcgtggatga cgtgaagcag gccatgtcgg gccttctcgc ccccactctt
     1801 cgcgaggagc gcctcggcga ggcgcaggta ctcgaggtct tcaacgtgtc gaaggtcggg
     1861 aaggtcgcgg gctgccgcgt cctggacggc gtcgtccagc gcggggcgca cgtgcgtctc
     1921 atccgcgaca acgtcgtcat ccacgagggt cgcctgtcgc agctcaagcg cttcaaggat
     1981 gatgcccgcg aggtaacggc cggccaggag tgcggcatgg ccttcgagaa ctaccaggac
     2041 atgcgcaccg gcgacgtgat cgagtgctat aacgttacgg aagtccagcg gactctgtaa
     2101 cgtgtcgtcc cggggcggcg gaaggccgag cccgggacta tgaccacagg tcagcctccg
     2161 tgcgacaaag acctttcgtc tccgaatccc cgctttgcgg gacgatagct cactgaaaga
     2221 gcgccggttc gattccggga agcaccgatg ccaaagcgtt ttgaaaaccc agccggcccg
     2281 tcgcagcgtc agcagcgcgt ggccgagctc gtgcggcatg cgctcgcgga ggtgctgagc
     2341 cgcggcgaca tccaggatcc cgtgctgacg aagcacgtgg tcacgattcc cgaggtgcgc
     2401 atgtcgcccg acctcaaggt cgcgacggca ttcgtgatgc cgctcggcgg gcgcgacgag
     2461 gcggccgtcc tcgatgcgct agaccgcaac cgcaaggcgc tccgacagga ggtcgcgcat
     2521 cgcgtgaacc tcaagttcgc gccggacctg cgcttccgcc gtgacgacag cttcgatgag
     2581 gcggccaaga tcgatgcgct cctgcgctcc gagaaagttc gtaaggacac ggataagctg
     2641 cctgagaacg acgaggagtg atcctcgccc ggtgcttttc ccgtggccta aagcgtaagg
     2701 gccagctcgg agtcccacct cagccgggaa agcgccggca actcccacat caacagagag
     2761 cacatgaccg agcccactga acatcgcccg ccccgggagc cgcgcccgcc gcgcgagcag
     2821 cgccccaaga agcgcgacgt gcatggctgg ctggtgctcg acaagggcgt cggcatgacc
     2881 tcgacgcacg ccgtcgcggt cgcgaagcgc actctgaacg ccaagaaggc cggccacgcc
     2941 ggtacgctgg accccctcgc gtccgggatc ctgccgatcg cgctcggcga ggccaccaag
     3001 accgtgccgt tcgtcatgga cgggcagaaa tcatacgtgt tcaccgtgac gtggggcgtc
     3061 gagaccgaga ccgatgacgc cgagggccgc cccgtgcagg ccacgaaccg agcgccaagc
     3121 gccgacgagg tctcggccct gctgccccgg ttcacgggct ccatcgagca ggtgccgccg
     3181 cgctactccg ccatcaagat ccagggcgag cgcgcctatg acctcgcccg ggacggcgag
     3241 atggtcgagc tgcagccccg cacggtcgag atcgagcgcc ttgcgctcct gagccacgac
     3301 ggcgaccgca gcgtgctcgc ggccgattgc ggcaagggca cctacgtgcg cgcgctcgcc
     3361 cgcgacatgg gccgggcgct cggttgcctc ggccacgtct cggcactgcg ccggacccgc
     3421 gtcgggccgt tcacggaaga tgccgctgtc acggtggagc agctggagca gcaggcagct
     3481 ggcggcgacc tcgcgcatgt gctgcgcccc gtcgacgcag cgctgtcgga ggtcccgtcg
     3541 gtcgcggtgt cgcgcgattt ggctggccgg ctcatgcgtg ggcagtccgt catcttgcgc
     3601 ggccgcgacg cgccgctcgg cggcaagctc tatgccacgc ttaacggggt gctcgttgcc
     3661 gtaggcgacg tcgagcgcgg ggagctcgtc ccgcaccgcg tctttaatct cggggcttga
     3721 gctccgcccc ccttaagcgg agtctggcga cgcgaaggaa gggagagagg gcgaacgcgg
     3781 cacctcgtct cgtcgtcgtc aggtgatcca gggcggtacc cggtcgaggc cgatcagctc
     3841 gtcgtatgtc gggcgagcgc ggaccaccga ggcagcatcg ccccggacca gcacctcggg
     3901 ggcggggagc cgggtgttgt aggtcgagcc ctggacagct ccgtaggcgc ccgccgtcat
     3961 gatggcgagg aggtcgccgg cggcgacctc gggaaggtcg cggtcaaggg ctaggtagtc
     4021 gccgctctcg cacaccggcc cgaccacgtc gacgacaatg cgcgaggcat cggcgcgggg
     4081 ctcggtcacg gggcggatcg cgtggtacgc gtcgtagagg gtcggccgga tgaggtcgtt
     4141 catgccggca tcgacgatga cgaaggtctt cccctcgccg tgcttcacgt agagcacccg
     4201 ggtgacgagg atgccggcgt tgccggcgat gaggcgcccg atctcgaaga tcagcttgag
     4261 gccgagccct tccgtgttgc gcttcaccac ctcggcgtag gcggcgggca gcggcggcgc
     4321 ctcgtcgtcg tggtacggca ccccgagccc gccgcccacg tcgatgtggg tgagccggtg
     4381 cccgtcggcc atgaggtcgc gcgcgagctc gaccaggagc cgggtcgcgt tgtcgaacgg
     4441 ctcgagctcg gtgatttggc tgccgatatg cgtgtcgacg cccgtcacct tgagtccgcc
     4501 gagccgggcg gcctgcgcgt acacggcgcg ggcgcgcgag atcgggatgc cgaacttgtt
     4561 ctccgacttc cccgtcgaga tcttatggtg cgtcctggcg tcgacatcgg ggtttacgcg
     4621 aatcgagacc ggcgcaacca cgcccttggc gcgcgccacc tcggcgagca tcgcgagctc
     4681 gggctcgctc tcgacgttga agcagagaat cccggcgtcg agggcggccg ccatctcgtc
     4741 gcgcgtcttg gcgatccctg agaaaacaat gcgctcgccc gggacgccgg ctgacagtgc
     4801 ccggcgcagt tcgccgcccg aaacgatgtc catgccggcc ccgagccgcg caagtgtgcg
     4861 cagcacggcc tgattggagt ttgccttcac ggcgtagcag atgagcgcat cgcgctcggc
     4921 aaacgcctcg gcgaagacgg tgtagtggcg ttcgagggtg gccgtggaat agcagtagaa
     4981 cggggtaccc acgcgctcgg cgagagccga gaggtcgacg tcttcggcgt ggaggatgcc
     5041 gccgcggtat tcgaaatggt gcatcggcgc cgctcagagc agcgggtcga ggatgaatgg
     5101 ctccttcgga atggtatagc cgcgacgcgg cgtcttcgtt cgcggagcgg gcgtcggagc
     5161 gatggccggc cccctcacct cttcctcttc ctcgtcgtcg tcggcttgag cggcacccgg
     5221 cgtcggcgcc gcgatggcag ccgacgcgcc cccccgttgt cccttgatcc gatcgcgctc
     5281 ggcctggcgc tgctgctcgg cagcgacagc gatcggatcg ggtggggctt cgagccgccc
     5341 gcgccggccg caggccgaca gcgcgagcac cagaagcgac gcgagcacga aggcgcgacc
     5401 ggcggaggac aaaggcaggg acatcatagg ctccgaaacg tggcggcacc ttagaggcaa
     5461 ggttccccgg atgcgagacc ctgcgggtcg cgcatcgccg atcgccgttc cgtgcgccga
     5521 cagcgcaaca cgtgaaacag ctccattaag ccccggttaa cctcccggag agcaggctgc
     5581 tttcagaaca agcacagcag cggccgtcag gattgcctgc ctgcgccacc gccagcaact
     5641 cgacatcaac ctcggcgcgt gcctcctcgc tcggtccgat cacccgcagc gagagtcgac
     5701 aagaagcggg acagacccgc ccgcgccgag ggtttcctct ccctctcccg ccgcgacatc
     5761 gtgaaccgga agccgtgcct tgcccttgag cgggccgcag atcgtcgcca tagctcgggc
     5821 atgccgtccc tccgtcgctc cgttcctctc ctcgcgctgg ccgccacggc ggcggtcgct
     5881 cttggggccg cctcgatcta cggaaccggg ccgctctcgg gctcgggcga atgccgggcc
     5941 gcgcgggccg tgagcgcgcg gatcgcaccc ctggcgaagg gcgaggtcgc cgcgctttcg
     6001 gcgctctcga ccccgaaacc cgcaccggcg atcgccttca atgccccgga cgggcgcccg
     6061 atcgacctcg cggccctgaa tggaaaggtc cgcctcgtga acctctgggc gacgtggtgc
     6121 gtgccctgcc ggcaggagat gcccgccctc gaccagctcc aggccgagtt cggcggcccc
     6181 gagttcgagg tcgtcgcggt caatgtggac acccggaacc tcgagcgtcc gaggacctgg
     6241 ctgcaggaaa acggcgtcaa gcggctcgcc tactacgccg acccaagcgg gaaggtcatg
     6301 caggtcctcc agcgctcggg cgacctcgta gggctcccga cgtcgatcct cattgaccgg
     6361 gacggatgcc agatcgcggt gctgaagggc cccgccgaat gggcaagcgc cgacgccaaa
     6421 gccctcatcg cagccgcgct ggcgcgtcct gccggctcgt agccctcgtt aggtgctcgc
     6481 gttcatggcg gcctgctcgg ccttccagcg cgccatgaac gcccggaagg cctcgtccat
     6541 ttccgcctgt accttctgga caagcggctg gtctgaaacg aaggcgacat agcgagcgag
     6601 cttcgggcgc ttcgtcagcg cgtcgtcgcc gccccgcgtt agcttgttgc catagtagag
     6661 ccaggtcgca agggcgcagt cggcgagcga catggcgccc ccgaccgccc agccgtcgcc
     6721 ggagaggaac gtgtcgaggg cgtcgagccc cttgtcgagg gtcgcgcgct cgctcgcctc
     6781 gatcgtgaag gtcgggtccg cagcggccct caggatcggg aagattccgg cacagtagag
     6841 gtcgaccacg cgcgcgatga ggcggacccg ggctcggtcg tgcgccgacg cgccgcgcag
     6901 cgagggcgtc gggaatacgt cctccaggta ctcgcagatg acgtagctct cgggcagcac
     6961 gaagccgtcg tgctcgagga cgggcatctt gccgatcggg ttcatgcgcc ggaactccgg
     7021 gtcggcgagg ttcgcggggc gcagctcgag gtcgatattc ttggccgccg cctgcatgac
     7081 gacgcgggta acgtagggcg agccgccgga gccgtggagc acgatcatgg agaggtcctt
     7141 caggtggttt cgcgggacgc tacgaccgga gccgggcctt gtcaccaagg ggcgtttctg
     7201 ccataagccg cgccttcatg acccgcccgg ccggttaggg ctgccgtggc gggtcgtttt
     7261 gctcatgcag caacgcaaaa gagccgccgc cgggtgcaca aggccggctg agcggctcgt
     7321 caggagagcc aaatgcccaa gctgaagacc aagtcgggcg ctaaaaagcg cttcaagatc
     7381 accgggaccg gcaaggtgat gtacgcccag gccggcaagc gtcacgggat gatcaagcgg
     7441 accaagaagc agatccgcaa cctgcgcggc acgaccacga tgttcgaggg cgacgcgtac
     7501 aacgtgaaga agtacttcct gcccaacggc tgaagtcgct ctcacaccga tcattctcga
     7561 gcattctgac ggagatctcc tatggcccgc gtgaaacgcg gcgtgaccag ccacgccaag
     7621 cacaagaaag tcctaaaagc cgccaagggc tactatggcc ggcgcaagaa cacgatccgc
     7681 atcgccaagc aggcggtcga gaaggcgatg cagtacgcct accgcgaccg caagaacaag
     7741 aagcgcacct tccgcgcgct ctggatccag cgcctcaacg cggcggtccg cgagcacggc
     7801 ctcacctatt cgcgcttcat cgacggtctc ggcaaggccg gcgtcgaggt cgaccgcaag
     7861 ctcctgtccg agatggcgat ccacgagccc gcggcgttcg cggcctacgt cgagcgcgcc
     7921 aaggcgtcgc tgcccgccga ccaggcgcag caggctgcct gagcgtccgg ctggcgcgcc
     7981 gcaccggctt catcgcagac gtctagcgcg gcggtccttc gggccgccgt tcgcgtgcgc
     8041 gcaccgcgtc aaccttgacg gtcgtaacgc cgcaccgcag taagcgcccc acccgcatgc
     8101 gcaggcaccg atgacggact tgtcgacact ggaacgcgac ctcctcggcc aagtcggggc
     8161 ggcgcccgac gaggcagccc tcgaggcctt gcgggtcgcg gcgcttggca aaaagggcac
     8221 aatctccgag cttctgaaga cgctcgggtc catgacgccg gaagagcgcc gcgagaaggg
     8281 tccgctcatc aatggcctgc gcgacaacgt ccagggagcc atcgccaggc gtaagggggc
     8341 gctagcggaa gccgcactcg acgcgcgcct tcaggccgaa cggatcgacg tcaccctccc
     8401 ggtgcgggaa ggacctgaga cgcgagggcg catccacccc atcacccagg tgatggatga
     8461 gctcagcgcc atcttcgccg acatgggctt ctcgatcgcc gagggacccg acatcgagac
     8521 ggactacctc aacttcacgg ccctgaactt ccccgaaggg catccggccc gggagatgca
     8581 cgacacattc ttcctgcgac cggacgcgag tggagaccgc aaggtcctgc gcacccacac
     8641 atcgccggtg cagatccgca ccatgaagtc cgtcgcgccg ccgatccggg tgatctgccc
     8701 ggggaggacc taccggcacg actccgacca gacgcataca ccgatgttcc accaggtcga
     8761 aggcttggtg atcgaccgcg aggcccacat cgggcacctc aagtggatcc tcgagga
//
LOCUS       DASQWN010000444         3837 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1366702, whole genome shotgun sequence.
ACCESSION   DASQWN010000444 DASQWN010000000
VERSION     DASQWN010000444.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 3837)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3837)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3837
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1366702"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..446
                     /locus_tag="VE686_08400"
     CDS             <1..446
                     /locus_tag="VE686_08400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018261729.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="FAD-linked oxidase C-terminal domain-containing
                     protein"
                     /protein_id="HYY84506.1"
                     /translation="RTRLWQARHDVYWASIALRPGAKGVATDVCVPISRLADCVEETR
                     KEIDELGLLSPIAGHVGDGNFHCMPLVDMDDPDEIARAELFIERLVERALAMGGTCTG
                     EHGVGQKKMKYLEAEHGPEALALMRALKRTIDPKNIMNPGKVVPL"
     gene            516..>3837
                     /locus_tag="VE686_08405"
     CDS             516..>3837
                     /locus_tag="VE686_08405"
                     /inference="COORDINATES: protein motif:HMM:NF024893.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AsmA-like C-terminal region-containing protein"
                     /protein_id="HYY84507.1"
                     /translation="MRDILTVLAAILILILGAAVVVPPFVDWEARREQVDQAITEAAG
                     VPAKTEGRIRLRLLPSPRIALDGLRLGPAGPGGPSLAATFVRAEVALTPLLSGKVRFA
                     ETRIGRAEIRVPIGSDLRLPEGFTDPDVLHREWALEDLSVAQLLVTTVTPATGRTNQA
                     YAENVRIVSQSLAGPWRMEGTTVGVPFRVVTGAIGGDRTVAVKLSGGGDIHPRFDIDA
                     TIELAAHAGAIPAVSGNARLLFGPPAQVAAAGIPIPVSVQAAFRTVASTVELDPVTIE
                     AGEGGASLRMTGTGAVRTDDPAVFLKLEGRRLDVDSFIMSAQGRDFGERWHNWRLPET
                     TTPIDLNLALNSVGLAQDEITNVRFRGMVRRGRAEIERLEMTAPGQTQITVSGDVGLS
                     SEGGGSGRIGIVSGASDRFARYLDRLDLGGPHLTPLDGRPFEAAADVALANPVTSFRN
                     MRLKIGDATMTGSLRHTAAEAGARARVDAQVAIQGLDLNDLPQLHGLAAVTETADLGL
                     IVDARDVRQGKRPELGRIAARVASDGPSLIVDTLEVSNLAGANAQVRGRIEPDGSGRI
                     AGKVNAKRAAPLLDLLGSVWIGGSSKLVPYFLREGALDLDVVAERAAAPRSQDGLGLR
                     TSLRGTAAGGLLEADVLALDGRTETMSLRLATNNTGTWINRPDAATLRRPSNIELAGV
                     RVGSGEFNVTAKGEIGGVKVGTTRAFGLSANDEVVDSGEAELSTPDVTPFLVLLGDGA
                     GVEPPVPMQLKVTLGRERDRSLFDVSGRVGPGAVQARLSAKSRSDLEGSVTLERLSAP
                     WLAAAFALNAPPDPNATAAWSGARFGQTRRVIDGGRATFKVARFDLGRGLIAENAGFI
                     FEITPEGMLLRDVAAGLSGGRLSGTLAISRQGSQAAFVGEGSIRDAAIPALTGSPAID
                     GRLSATLRFGASGESLVSVVSNLAGAGDVRLTDLTLPNADPEALARAVPRLMGEDDPL
                     AGGRSQAVVTEELGRGPFRAPTVAAAATLVGGALRIGPITADAGGALWQGTATVDLKS
                     LAIEARGTLTARARPTSWTAGSPYIQLAWRGTPRDLRREVDAGSLVNGLAAVVLQREL
                     ERVEAFEADANERLRANQG"
BASE COUNT          532 a         1405 c         1353 g          547 t
ORIGIN      
        1 accgcacccg cctgtggcag gcgcggcacg acgtctactg ggcctccatc gcgctgcgtc
       61 ccggcgccaa gggcgtcgcg accgacgtct gcgtgccgat ctcgcggctt gccgactgcg
      121 tcgaggaaac ccgcaaggag atcgacgagc tcgggctgct ctcgcctatc gccgggcacg
      181 tgggcgacgg caacttccac tgcatgcccc tcgtcgacat ggacgacccc gacgagatcg
      241 cgcgggccga gctgttcatc gagcgcctcg tcgagcgggc gctcgccatg ggcggcacct
      301 gcacgggcga gcacggggtc ggccagaaga agatgaagta cctggaggcc gagcacggcc
      361 ccgaggcgct ggcgctcatg cgcgcgctca agcggaccat cgatccgaag aacatcatga
      421 accccggcaa ggtcgttccg ctctgagggc cgccatgctc ccgccacgga gcgcccccac
      481 tcaggagtga cggcagaccg cccgaagaga acccgttgcg cgacatcctg accgtcctgg
      541 ccgcgatcct gatcctgatc ctcggggcgg cggtggtcgt gccgccgttc gtcgattggg
      601 aggcacggcg cgagcaggtc gaccaggcca tcacggaggc ggccggcgtc ccggccaaga
      661 ccgaggggcg catcaggctc cgcctcctgc cgtcgccgcg catcgccctc gacggcctca
      721 ggctcgggcc cgcgggcccc ggcggcccct cccttgcggc gacgttcgtt cgggccgagg
      781 tcgcgcttac gcccctgctc tccggcaagg ttcgcttcgc cgaaacgcgc atcggcaggg
      841 ctgagatccg cgtcccgatc gggtcggatc tgcgcctccc cgagggtttt accgaccccg
      901 acgtgctgca ccgcgagtgg gccctggagg acctctccgt cgcccagctc ctggtgacca
      961 ccgtgacgcc tgcgacaggc cggacgaacc aggcctacgc cgagaacgtc cgcatcgtca
     1021 gccagtcgct cgccggaccc tggcgcatgg aaggcaccac ggtcggggtg ccgttccggg
     1081 tcgtcacggg tgcgatcggc ggcgaccgca cggtggcagt gaagctctcg ggcggtggcg
     1141 acatccaccc gaggttcgac atcgacgcga cgatcgagct cgcggcccac gcgggcgcga
     1201 tccctgcggt ctcgggcaat gcgcggctcc tgttcggtcc gcccgcccag gtcgccgctg
     1261 ccggcatccc gatcccggtc tccgtccagg cggcgttccg aacggtcgcg agcacggtcg
     1321 agctcgatcc cgtcaccatc gaggccgggg agggcggcgc gagcctgcgc atgaccggaa
     1381 ccggtgccgt acgcaccgac gacccggcgg tgttcctgaa gctcgagggc cgccggctcg
     1441 acgtcgacag cttcatcatg tcggcgcagg ggcgcgactt cggcgagcgc tggcataatt
     1501 ggcgcctccc cgagaccacg acgcccatcg acctcaacct tgctctgaat tccgtcgggc
     1561 tcgcgcagga cgaaatcacc aacgtgcgct tccgcggcat ggtgcgacgt ggccgggccg
     1621 agatcgagcg gctggagatg accgcgccgg gccagacgca gatcacggtg agcggcgacg
     1681 tcgggctcag cagcgaaggc ggagggtcgg ggcgcatcgg catcgtctcg ggcgcctccg
     1741 accgctttgc gcgctacctc gaccggcttg acctcggggg gccgcacctg acgcccctcg
     1801 acggccgccc gttcgaggcg gcggccgacg tggcgctcgc taatccggtg acctcgtttc
     1861 gcaacatgcg gctgaagatc ggcgacgcca ccatgacggg gtccctgcgc cacaccgcgg
     1921 cggaagcggg cgcccgcgcc cgggtcgacg cgcaggtcgc catccagggc ctcgatctca
     1981 acgacctgcc gcagttgcac gggctcgcgg ccgtgacgga gacggccgac ctcggtctga
     2041 tcgtcgacgc gcgcgacgtg aggcagggca agcgtccgga gctcgggcgc atcgccgccc
     2101 gcgtcgcttc cgacgggccc tcgctcatcg tcgacaccct cgaggtgtcc aatctcgccg
     2161 gggccaacgc gcaggtcaga ggacgcatcg agccggacgg ctccggccgc atcgccggca
     2221 aggtgaatgc caagcgcgca gctccgctcc tcgatcttct cgggagcgtg tggatcggcg
     2281 gatcgtcgaa gctcgtgccg tactttctcc gtgaaggcgc gctcgacctc gacgtcgtcg
     2341 ccgaacgcgc cgccgcgcca cgctcccaag acgggctcgg cttgaggaca tcgctgcgcg
     2401 gcacggcggc gggcggcctg ctcgaggcgg acgtcctggc gctcgatggt cgcaccgaga
     2461 ccatgtcgtt gaggctcgcc accaacaaca cgggcacgtg gatcaatcgc ccggacgcgg
     2521 cgacgctcag gcgtccctcc aacatcgagc tcgccggcgt gcgcgtcggg tcgggcgagt
     2581 tcaacgtcac cgccaagggc gagatcggcg gcgtcaaggt tggcaccacc cgggcctttg
     2641 gactgagcgc caacgacgaa gtcgtggaca gcggcgaggc cgagctgtcg accccggacg
     2701 tgaccccctt cctcgtgctc ctcggcgacg gagccggggt cgagcccccc gtgcccatgc
     2761 agctcaaggt caccctcggg cgcgagcgcg accgctcgct cttcgacgtc tcgggccggg
     2821 tgggccccgg cgccgtgcag gcccgcctct cggctaagtc gcgctccgat ctggagggga
     2881 gcgtaacgct tgagcggctt tcggcgccgt ggctcgccgc cgccttcgcc ctcaacgcgc
     2941 cgccggaccc gaacgccact gcggcgtggt cgggggcccg tttcggccag acgcggcgcg
     3001 tcatcgacgg aggccgggcg accttcaagg tcgcccggtt cgatctcggt cgcgggctca
     3061 ttgccgagaa cgccggcttc atcttcgaga tcacgcccga aggcatgctg ttgcgggatg
     3121 tcgcggcagg tctttccggc gggcgcctct cgggcacgct tgccatcagc cgacaaggct
     3181 cgcaggcggc cttcgtgggc gagggcagca tccgcgacgc ggccatcccg gcgctcaccg
     3241 gatccccggc catcgacggc cggctttcgg cgacgctgcg cttcggcgcg tccggcgagt
     3301 cgctcgtctc ggtggtatcg aatctcgccg gtgcggggga cgtgcggctc acggacctga
     3361 cgctgccgaa tgcggacccg gaggcgctcg cccgcgcggt gcctcgcctc atgggcgagg
     3421 acgatccgct cgccggcggc cgctcgcagg cggtcgtgac ggaggagctt gggcgcgggc
     3481 cgttccgcgc ccccacggtc gcagccgccg ccaccctcgt cggaggggca cttcgcatcg
     3541 ggccgatcac ggcggatgcc ggcggagctt tgtggcaggg gaccgcgacc gtggacctca
     3601 agagcctggc gatcgaggcg cgcggcacgc tgacggcgcg ggcccggccg acgtcctgga
     3661 ccgccggctc gccctatatc cagctcgcct ggcgcggcac gccccgcgat ctgcgtcgcg
     3721 aggtcgacgc cggctcgctc gtcaatggcc ttgccgccgt cgtcctgcag cgcgagctcg
     3781 agcgggtcga ggccttcgag gccgatgcga acgagcgtct gcgtgccaac cagggcc
//
LOCUS       DASQWN010000445         3789 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_335230, whole genome shotgun sequence.
ACCESSION   DASQWN010000445 DASQWN010000000
VERSION     DASQWN010000445.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 3789)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3789)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3789
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_335230"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2583)
                     /gene="ileS"
                     /locus_tag="VE686_08410"
     CDS             complement(<1..2583)
                     /gene="ileS"
                     /locus_tag="VE686_08410"
                     /EC_number="6.1.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019401325.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004822 - isoleucine-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006428 - isoleucyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="isoleucine--tRNA ligase"
                     /protein_id="HYY84508.1"
                     /translation="MNETAPAAAQARDYSKTLFLPKTDFPMRAGLPQREPLLLQRWHD
                     IGLYRRQREQAAGKPRFVLHDGPPYANGNIHIGHALNKILKDMVARSQGMLGQDANYV
                     PGWDCHGLPIEWKIEEEYRARGKDKDDVPVVEFRRECRAFAEKWIDVQRTEFKRLGVE
                     GDWDHPYETMAYPAEAQIAREIMKFAASDQLYRGSKPVMWSSVEKTALAEAEVEYHEK
                     TSPTVHVRFPIIDTLDGDLEGASVVIWTTTPWTIPANRAIVYGSEIAYGLYRVTDAPG
                     DNWAKAGDVYVLADKLAAEVFAAARVGSYERVKDVLPVMIARCAHPFRGLAGANGYWD
                     FDVPVLPADYVTDDAGTGFVHTAPGHGADDYNTFVKHRETFAACGTAEVPHTVSEDSS
                     YYPDVPFFAGERIFDDKGKEAGANEAVIRKLVEVGALVARGRLKHSYPHSWRSKAPVL
                     FRNTPQWFIAMDRQVRALGNRTLREIALGEIQRIGTEGGWVPASGENRIRGMIENRPD
                     WVVSRQRAWGVPIAVFVRKGTNEVLKDDGVNAAIAQAFEKEGADAWFDDGAGERFLTP
                     FGHDQADYEKVDDILDVWFDSGSTHAFTLEVRDDLKTNRRIDGGADRVMYLEGTDQHR
                     GWFHSSLLESCGTRGRAPYDVVLTHGFVLDEKGEKMSKSKGNVVAPQTVMKDSGADIL
                     RLWVAASDYSDDLRIGPEILKTFVETYRKLRNTLRWMLGTLGHFREDERVDASAMPEL
                     ERFVLHRLAELDGDIRSAYAAFDYKRVVALLNSFMTSDLSAFYFDVRKDALYCDPLSS
                     LIRKSALTVVDETFRRVASWLAPVLAFTAEEAWLSRYPSEADSVHLHDFPETPQAWRD
                     EALAE"
     gene            complement(2810..>3789)
                     /locus_tag="VE686_08415"
     CDS             complement(2810..>3789)
                     /locus_tag="VE686_08415"
                     /EC_number="2.7.1.26"
                     /EC_number="2.7.7.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007560018.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003919 - FMN adenylyltransferase activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="bifunctional riboflavin kinase/FAD synthetase"
                     /protein_id="HYY84509.1"
                     /translation="SAPGRHFTVCRDGDPVPPALARAVVAVGNFDGVHRGHQHLIAVA
                     EAQARENGGPAAVMTFEPHPQAFFRPDVPHFRLTPDPVKLAVLGRLGLDGVFVRRFDA
                     ALAAMSAADFVQGLMAGELGVAGVVAGHDFHFGRGREGTPQVLQELCAGAGLSCTIVS
                     VVEEQGAPVSSSAIRTGLAQGNIATANELLGYRWFVAGEVRHGEKRGRTLGFPTANIA
                     LDPACGLRHGIYAVRAALGAGDVRDGVASFGRRPTFDDGAPLLETYVFDFAGDLYGRT
                     LEVEFVSFIRPEERFESADALVARMNEDAREARQLLAAAQGRGPPSLVA"
BASE COUNT          576 a         1279 c         1362 g          572 t
ORIGIN      
        1 ctcggcgaga gcctcgtcgc gccacgcctg gggcgtttcc gggaaatcgt gcagatgcac
       61 cgaatcggcc tccgacggat agcgcgacag ccacgcctcc tccgccgtga aggcgaggac
      121 gggcgcgagc cacgacgcca cccgccggaa ggtctcgtcg acgaccgtca gcgcgctctt
      181 gcggatgagg ctcgacagcg gatcgcagta gagcgcgtcc ttgcggacat cgaagtagaa
      241 cgccgacagg tcgctcgtca tgaacgagtt gagaagcgcc acgacgcgct tgtagtcgaa
      301 ggccgcgtag gccgagcgga tgtcgccgtc gagctcggcg aggcggtgca gcacgaagcg
      361 ctcgagctcc ggcatcgcgc tcgcgtcgac gcgctcgtcc tcgcggaagt ggccgagggt
      421 gccgagcatc cagcgcaggg tgttgcggag cttgcggtag gtttcgacga aggtcttgag
      481 gatctccggg ccgatgcgca ggtcgtcgga atagtccgag gccgcgaccc acaggcgcag
      541 gatgtcggcg ccactgtcct tcatcaccgt ctgcggagcg acgacgttgc ccttcgactt
      601 cgacatcttc tcacccttct cgtcgaggac gaaaccatgg gtgaggacga cgtcgtaggg
      661 cgcgcgcccg cgcgtgccgc agctctcgag cagcgacgag tggaaccagc cgcgatgctg
      721 gtcggtgcct tcgaggtaca tgacgcgatc ggcgccgccg tcgatgcggc ggttcgtctt
      781 caggtcgtcg cggacctcga gcgtgaaggc gtgcgtcgac cctgagtcga accagacgtc
      841 gaggatgtcg tcgaccttct cgtagtcggc ctggtcgtgg ccgaacggcg tcaggaagcg
      901 ctcgccggcg ccgtcgtcga accaggcatc ggcgccctcc ttctcgaagg cctgggcgat
      961 ggcggcgttc acgccatcgt ccttgaggac ctcgttcgtg cctttccgga cgaagacggc
     1021 gatgggcacg ccccaggcgc gctggcgcga cacgacccag tcgggccgat tctcgatcat
     1081 gccacggatg cggttctcgc cgctcgccgg cacccagccg ccctccgtgc cgatgcgctg
     1141 gatctcgccg agcgcgatct cgcgcagggt gcggttgccg agcgcccgca cctggcggtc
     1201 catggcgatg aaccactgcg gcgtgttgcg gaacaggacc ggcgccttcg agcgccagga
     1261 atgcggatac gagtgcttga gccgcccgcg cgccacgagg gccccgacct cgacgagctt
     1321 gcggatcacg gcctcgttgg cgccggcctc cttgcccttg tcgtcgaaga tgcgctcgcc
     1381 ggcgaagaat ggcacgtccg ggtaatagga ggaatcctcc gacaccgtat gcggcacctc
     1441 ggccgtgccg caggccgcga aggtctcgcg gtgcttgacg aaggtgttgt agtcgtccgc
     1501 gccgtgcccc ggcgccgtat gcacgaaccc cgtgccggca tcgtccgtca cgtaatcggc
     1561 cggaagcacg gggacgtcga agtcccagta cccgttcgca ccggcgaggc cgcggaacgg
     1621 atgcgcgcag cgcgcgatca tcaccggcag cacgtccttg acgcgctcgt acgaaccgac
     1681 ccgcgcggcc gcgaagacct cagcggcaag cttgtcggct aggacgtaaa cgtcgcccgc
     1741 cttggcccag ttgtcgcccg gcgcgtcggt cacgcggtag aggccgtagg cgatctccga
     1801 gccgtagacg atggcgcggt tcgccgggat cgtccacggc gtggtggtcc agatcaccac
     1861 cgacgcgccc tcgagatcgc cgtcgagcgt gtcgatgatg ggaaagcgca cgtgcacggt
     1921 cggcgaggtc ttctcgtggt actcgacctc ggcctccgcg agcgccgtct tctcgaccga
     1981 ggaccacatc acgggcttcg agccgcggta gagctggtcg ctcgccgcga acttcatgat
     2041 ctcgcgggcg atctgcgcct cggcggggta cgccatggtc tcgtagggat ggtcccagtc
     2101 gccctcgacg ccgaggcgct tgaactcggt gcgctgcacg tcgatccact tctcggcgaa
     2161 cgcacggcac tcgcggcgga actcgacgac cggaacatcg tccttgtcct tgccccgggc
     2221 gcgatactcc tcctcgatct tccactcgat cggcaggccg tggcagtccc agccgggaac
     2281 gtagttggcg tcctggccga gcatgccttg cgagcgcgcg accatgtcct tcaggatctt
     2341 gttgagggca tgcccgatgt ggatgttgcc gttggcgtaa ggggggccgt cgtgcaggac
     2401 gaagcgcggc ttgccggccg cctgctcgcg ctggcggcgg tagaggccga tgtcgtgcca
     2461 gcgctgcagc agcaggggct cgcgctgcgg caggcccgcg cgcatgggga agtcggtctt
     2521 cggcaggaag agcgtcttcg agtagtcgcg cgcttgcgcg gcggcagggg cggtctcgtt
     2581 cattggcggt cgaaccggtc ggggcatgcc gtcaagcgtg acggcgggcg ggtctaaggg
     2641 aagcgagtaa agccgtccgg cctcgcgagc agtcagctca agcgagggcc ggccgaataa
     2701 ttcgcggcgc ggcggccggc gcggtggcga gaagcgatcc ctggcacgtc atggcgcagc
     2761 ttctagcaga gacgcgccgc gtgataaagc gccctgcccg gccggtgagc tacgcgacga
     2821 gcgagggcgg ccctctgccc tgcgcggccg ccaggagttg ccgcgcctcg cgcgcatcct
     2881 cgttcatgcg cgccaccagg gcgtcggcgc tctcgaagcg ctcctcgggc cggatgaagc
     2941 tgacgaactc gacctcgagg gtgcggccgt agaggtcgcc ggcgaagtcg aagacgtagg
     3001 tctcgaggag cggcgcgccg tcgtcgaagg tcgggcgacg gccgaagctc gcgacgccat
     3061 cgcgtacgtc gccggcaccc agcgccgccc tgacggcgta gatgccgtgc cgcaggccgc
     3121 aggcgggatc gagggcgatg ttggccgtcg ggaacccgag ggtgcggccg cgcttctcgc
     3181 cgtggcgcac ctcgccggcc acgaaccagc ggtagccgag gagttcgttg gcggtggcga
     3241 tattcccctg cgcgaggccc gtgcggatgg cgctcgaaga cacgggcgcg ccctgctcct
     3301 cgacgaccga cacaatggtg caggacagcc ctgccccggc gcagagctcc tgcagcacct
     3361 ggggcgtgcc ttcgcgtccg cggccgaaat ggaaatcgtg gccggcgacg acgccggcga
     3421 cgccgagctc gcccgccatc aggccctgca cgaagtcggc ggcgctcatg gcggccagcg
     3481 ccgcatcgaa gcgccgcacg aagacgccgt cgaggccgag gcgcccgagc accgcgagct
     3541 tcaccggatc gggcgtgagc cggaaatgcg gcacgtcggg gcggaagaag gcctgcgggt
     3601 gcggctcgaa ggtcatcacc gccgcgggtc cgccgttctc gcgggcctgc gcctcggcca
     3661 cggcgatcag gtgctgatgg ccccggtgca ccccgtcgaa gttgccgacc gcgacgaccg
     3721 cgcgcgcgag cgcgggcggc accggatcgc cgtcgcggca gacggtgaag tgccgcccgg
     3781 gcgcggagc
//
LOCUS       DASQWN010000446         2979 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1070125, whole genome shotgun sequence.
ACCESSION   DASQWN010000446 DASQWN010000000
VERSION     DASQWN010000446.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2979)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2979)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2979
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1070125"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..217
                     /locus_tag="VE686_08420"
     CDS             <1..217
                     /locus_tag="VE686_08420"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HYY84510.1"
                     /translation="TDSPLGTAVRLDAYGNPIYDIMIRKVVKRGDGKFWNVPTDTYPG
                     VSQFWKYDPETYMKQPPYSRTYQAIKT"
     gene            271..1023
                     /locus_tag="VE686_08425"
     CDS             271..1023
                     /locus_tag="VE686_08425"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HYY84511.1"
                     /translation="MLRLENVVVRFGALRAVDGVSLSLGKGERRAIIGPNGAGKTTLF
                     NAITGVTIPTEGRVVVDGRDLTKAPPHLRARSGIGRTFQITNLFANLTISDNMRLAVR
                     GLAPSKFSLFRSDRLPAADQERVDQALAVSRLAARHNVVVSELSYGEQRQLEIAMALV
                     MQPRLLLFDEPAAGLSATERAYVAEILSALPRDLTIVLIEHDMELALGLVDFVTVMFN
                     GRVLVEDTPDQIRENDQVQEVYLGKPHSVEPA"
     gene            1024..1728
                     /locus_tag="VE686_08430"
     CDS             1024..1728
                     /locus_tag="VE686_08430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018452888.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HYY84512.1"
                     /translation="MLEVRGLHSYYGDAHILHGVSLDVARAEIVALLGRNGMGKTTLI
                     RSIMGLAPPQVREGSIRFEDEDLRTLRPHTIAQRKIALVPQGRRLFASLTVTEHLTML
                     KPASAKDGWNLTRVFETFPRLAERRYHRGTQLSGGERQMLAVGRALLLDPKLILMDEP
                     SEGLAPVMVQHLETVIANLRTEGLGILLVEQNLYSALAVADRVFVMETGEIVHQGTKR
                     DIQADPNSLRRYLGVQ"
     gene            complement(1825..2004)
                     /locus_tag="VE686_08435"
                     /pseudo
     CDS             complement(1825..2004)
                     /locus_tag="VE686_08435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008552676.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="formyltetrahydrofolate deformylase"
BASE COUNT          540 a         1004 c          920 g          515 t
ORIGIN      
        1 cacggactca cccctcggca ccgccgttcg cctcgatgcg tatggcaacc cgatctacga
       61 catcatgatt cgcaaggtcg tgaaacgcgg ggacggcaag ttctggaacg ttccgaccga
      121 tacgtacccg ggggtctccc agttctggaa gtacgatccg gaaacctaca tgaagcagcc
      181 gccctactcg cgcacgtacc aggccatcaa gacctgaccc cgccagctgc cgcaacgaag
      241 gctgagagtt ctgaacagtg cctaggtgcg atgctccggc ttgaaaacgt cgttgtccgc
      301 ttcggcgcct tgcgcgccgt tgacggcgtc agcctttcgc tcggcaaggg cgaaaggcgc
      361 gccatcatcg gcccgaacgg ggccggcaag accacgctgt tcaacgccat cacgggcgtg
      421 accatcccaa ccgagggacg cgtcgtcgtt gatgggcggg acctcacgaa ggcgcccccg
      481 catctgcgag cgcggagcgg catcggccgg acttttcaga tcaccaacct gtttgcgaat
      541 ctcacgatca gcgacaacat gcgcctcgcg gtgcgcggcc tcgcgccgag caagttctct
      601 ctgttccgca gcgatcggct gcctgctgcc gatcaggagc gggtggacca ggcgctcgcc
      661 gtgtcgcgac tcgccgcccg tcacaacgtc gtcgtcagcg agctctcgta cggcgagcag
      721 cggcagctcg agatcgcaat ggcgctcgtc atgcagccgc ggctgctcct cttcgatgag
      781 cccgccgccg gcctgtcggc aaccgagcgc gcctacgtcg ccgaaatcct cagcgcactc
      841 ccgcgcgatc tcaccatcgt gctcatcgag cacgacatgg agctcgcgct cgggctcgtc
      901 gatttcgtga ccgtcatgtt caatgggcgg gtgctggtag aggacacgcc ggaccagatc
      961 cgcgagaacg atcaggtgca ggaggtctat ctcggcaagc cccattcggt tgagcccgcc
     1021 tagatgctcg aagtccgcgg tctgcatagc tactacggcg acgcccatat tctgcacggc
     1081 gtctccctcg acgtcgcgcg ggcggaaatc gtggcgctgc tcggccgcaa cggcatgggc
     1141 aagacgaccc tgatacggtc gatcatgggt ctcgcaccgc cacaggtccg cgaaggatcc
     1201 attcggttcg aagacgaaga cctgcgaacc ttgcgcccgc acacgatcgc gcagcgcaag
     1261 atcgctctcg tgccccaggg ccggcggctc tttgcatcgc tcaccgtcac cgagcacctc
     1321 acgatgctga agcctgcctc ggcaaaggac ggctggaatc tcacgcgcgt cttcgagacg
     1381 tttccgcgtc ttgcggaacg gcgatatcac cgcgggacgc aattgtccgg gggagagcgt
     1441 cagatgctcg ccgtcgggcg cgcgcttctg ctcgacccga agctcattct catggacgaa
     1501 ccttcagaag gtctcgcgcc cgtcatggtc cagcacctgg agacggtgat cgcgaacctg
     1561 cgcacggaag ggctcggcat cctcctcgtc gagcagaacc tctacagcgc gctcgccgtc
     1621 gccgatcggg tgtttgtcat ggaaaccggc gagatcgtcc accagggtac caagcgcgac
     1681 atccaggccg acccgaattc cctgcgccgc tacctcggcg tgcagtagaa cgtgatcggc
     1741 cggcgccgtt atggccaata cgtccgagct tattgacctc gcccaacgtc gggaacctga
     1801 gcgccgaggt ggctcggctt tgcgctagcg aaagatgacc gtccgttggc cggacagcat
     1861 cacacgatgc tcgatgtgaa gatgcagcgc ccgtgcgagg actaccgatt ccacgtcccg
     1921 tccggccgcg attagctcat cggggccgag cgtgtgttcg gcccgggcga cgtcctgctc
     1981 gatgatcggg ccttcgtcga gattgttgac ccgacgactg catggggact ccctcgcgat
     2041 gccaggagcg gcagggcgga gccatgcctc actgatgcgg ctccatacgc cgctcccagc
     2101 agggtcgtcg tgagatgccg ctacgcggag gcccgaacga atgccgcagc ggtgaacgcg
     2161 gcgcgctggt caggtgcaat cactggccac ctcctatcgc gatacgtcgt gacactcaga
     2221 gtatgacgac ggaccgagcc tctgcctgcg gcatctcgct gtcaatccgg aacgcggagg
     2281 gtgaccgcga cagagttcga acttgtaact ctcagcttcg aaggaggcac taacccgtcc
     2341 cggtcgtcct ccttcggcgt ggccactcgg tggggacgcg ccaggtcggc ggaggtaaaa
     2401 ggcgaaccgt gccctagcta acgtctcacc tcgtggcacg tctcgcggcc tgctgcgtca
     2461 tgcacacacg tgcgctggat tagattgcct gtcgtcgggg gctgctcgac gaccgccgtg
     2521 cccagccgcg gtgtattggc gttcgcatct gctgcgctgc cgacagccgc gcctaccgct
     2581 ccgccgatta cggcaccgat cgggcctccg atgagagcgc ctccgatggc cccagtggcc
     2641 gcaccagtcg tcgcccccgc cttgagcgac agctgccccg ggcaccacca ggaacccgaa
     2701 gattatcgga acgagagcca tcctgatgcc gcgcacgtca ccctcctctc gccaggagat
     2761 tctgccagcg aaacgcgaga tgcagaagca ggttccccga cccggacact cctgccgcgg
     2821 gtgtcccgtt cgagcttgac cggaaagaag tgaattggaa cgcacctccc attgagccaa
     2881 tctccaaaac agaaatcgga ggctgcgatg agtcctgggg aaggtgcgcc tgtgatgacg
     2941 ggcggctgcc agtgcggagc cgtgcgttac gcgttgtac
//
LOCUS       DASQWN010000447         2417 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_79106, whole genome shotgun sequence.
ACCESSION   DASQWN010000447 DASQWN010000000
VERSION     DASQWN010000447.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2417)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2417)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2417
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_79106"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            24..287
                     /locus_tag="VE686_08440"
     CDS             24..287
                     /locus_tag="VE686_08440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015932389.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2312 domain-containing protein"
                     /protein_id="HYY84513.1"
                     /translation="MAASPMPVDTQSVAADQLKSFIERIERLEEEKAALAGDIKEIFL
                     EAKGNGFDTKAMRKILSLRKKDHAERQEEEAILELYMQALGMS"
     gene            305..688
                     /locus_tag="VE686_08445"
     CDS             305..688
                     /locus_tag="VE686_08445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008835507.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1232 domain-containing protein"
                     /protein_id="HYY84514.1"
                     /translation="MGVAGLKQWARALKRDVVALWIAGRDRRVPWHAKAVAAAVAAYA
                     LSPIDLIPDFIPVLGYLDDLILVPLGIALAVRLIPPKLMAEFRAEATRREALPRSRAA
                     AAGIVALWLGAAALLLWLFWPTAGR"
     gene            complement(699..>2417)
                     /locus_tag="VE686_08450"
     CDS             complement(699..>2417)
                     /locus_tag="VE686_08450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012255104.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter permease subunit"
                     /protein_id="HYY84515.1"
                     /translation="ARLITPMLAAYFMRDHGHREPKDGFVMRGYTRLVGWSVRHKYVT
                     FVLGLCFFAASIYSTKLLPSGFLPEGDVGRSLFVVELAPGARLDDNKAVADRLTERLR
                     RMPEVRSVFVNGGVQLPLKKDVRLASVTINYVPKEERALSQKRLEAVISGMFRDEPDI
                     RFWTLNDNGQRGMQLIVSGTDQDSVIDTAARLERETRTIPTLVNVISTAPLNRPEIRI
                     RPKPDLAAELGVSTDVIAETMRVGTIGDIGANLAKFDACDRQIPIRVQLPEVSRGDLK
                     LLETLKVPGKGGAAVPLATVADIELGQGPASIDRYDRSLRVALEGDLQGTDALGGVLE
                     QVYALPTAKNLPPGVVIKQTGDAEVMTEVFESFGKAMGAGIMMVLGVLILLFASFLQP
                     FTILLSLPLSIGGAILALVLTQKAISLPVVIGFLMLMGIVTKNAILLVDFAVEEMARG
                     VDRVTAIVDAGRKRARPIVMTTIAMAAGMLPSAMGVGAGGEFRSPMAIAVIGGLLVST
                     LLSLVFVPAFFVLMDDLSRAFSWMFSRFVGPTDEPADETEAFATARLGNHAPIYPQPA
                     IKVAAE"
BASE COUNT          388 a          804 c          865 g          360 t
ORIGIN      
        1 accaacgaga acaggagccc ctcatggccg catcacccat gcccgtcgac acgcagtcgg
       61 tcgccgccga ccagctcaag agcttcatcg agcgcatcga gcgcctcgag gaggagaagg
      121 cggcgctggc cggcgacatc aaggagatct tcctcgaggc gaagggcaac ggcttcgaca
      181 cgaaggcaat gcgcaagatc ctgtccctgc gcaagaagga ccacgccgag cgccaggagg
      241 aggaagccat cctcgagctc tacatgcagg ccctcggcat gagctgaggc ttccgcgcgg
      301 cgcgatgggc gttgccggcc tgaagcagtg ggcgcgcgcg ttgaagcgcg acgtcgtcgc
      361 cctgtggatc gccgggcggg accggcgcgt cccctggcat gcgaaggcgg tcgcggcggc
      421 ggtcgcagct tatgcgctga gcccgatcga cctcattccg gacttcatcc cggtcctcgg
      481 ctacctcgac gatctgatcc tggtgccgct cggcatcgcc ttggcggtgc ggctgatccc
      541 accgaagctc atggccgagt tccgcgccga ggcgacgcgg cgggaggcgc tgccgagaag
      601 ccgggccgcc gcagccggca tcgtcgctct ctggctcggc gccgccgcgc tcctcctttg
      661 gctcttctgg ccgaccgcag ggcggtaacg ccggcgccct actccgccgc gaccttgatg
      721 gccggttgcg gatagatggg ggcgtggttg ccgagccttg cggtcgcgaa agcctcggtc
      781 tcgtcggcgg gctcgtccgt cggcccgacg aagcggctga acatccacga gaacgcgcgc
      841 gacaggtcgt ccatgaggac gaagaacgcg ggcacgaaga cgagcgacag aagggtcgag
      901 acaagcaggc cgccgatcac cgcgatggcc atgggcgagc ggaattcgcc gcccgcgccg
      961 acgcccatcg cggacggcag catgccggcc gccatggcga tggtggtcat gacgattgga
     1021 cgcgcccgct tgcgcccggc atcgacgatg gcggtgaccc ggtcgacgcc gcgcgccatc
     1081 tcctcgacgg cgaagtcgac gagcaggatg gcgttcttgg taacgatgcc catgagcatc
     1141 aagaacccga tcaccaccgg caggctgatg gccttctggg tcagcaccag cgccaggatg
     1201 gcgccgccga tggacaacgg cagcgagagc aggatcgtga acggctgcag gaagctcgcg
     1261 aagagcagga tcagcacgcc gagcaccatc atgatgcccg cgcccatggc cttgccgaag
     1321 ctctcgaaga cctcggtcat gacctcggcg tcgccggtct gcttgatgac gacgcccggc
     1381 ggcaggttct tcgccgtggg cagcgcgtag acctgctcga gcacgccgcc cagcgcgtcg
     1441 gtgccctgga gatcgccctc gagggcgacg cgcagggagc ggtcgtagcg gtcgatggac
     1501 gccggaccct gcccgagctc gatgtcggcg acggtggcga gcggcacggc cgcgccgccc
     1561 ttgcccggca ccttcagggt ctcgagcagc ttgaggtcgc cgcgcgacac ctcgggcagc
     1621 tgcacgcgga tcgggatctg gcggtcgcag gcgtcgaact tggcgaggtt cgcgccgatg
     1681 tcgccgatgg tgccgacgcg catggtctcg gcgatcacgt cggtcgagac gccgagctct
     1741 gccgccaggt cgggcttcgg ccggatgcgg atctcgggcc tgttcagggg cgccgtcgag
     1801 atcacgttga cgagcgtcgg aatcgtccgc gtctcgcgct cgagccgcgc cgccgtgtcg
     1861 atgactgagt cctggtcggt gccgctgacg atgagctgca tgccgcgctg gccgttgtcg
     1921 ttcagcgtcc agaagcggat gtcgggctcg tcgcgaaaca tcccgctgat cacggcttcg
     1981 aggcgcttct ggctcagcgc gcgctcttcc ttcggcacgt agttgatggt gacgctggcg
     2041 agccggacgt ccttcttgag cggcagctgc acgccgccgt tgacgaagac gctgcgcacc
     2101 tcgggcatgc gccgcaggcg ctcggtcagg cggtcggcga cggccttgtt gtcgtcgagg
     2161 cgggcgcctg gcgcgagctc gaccacgaac agcgaccgcc cgacgtcgcc ctcgggcagg
     2221 aagccggagg gcaggagctt ggtcgagtag atcgacgcgg cgaagaagca caggccgagc
     2281 acgaaggtga cgtacttgtg gcggaccgac cagccgacga ggcgcgtgta gccgcgcatg
     2341 acgaagccgt ccttcggctc ccggtgcccg tggtcgcgca tgaagtaggc cgcgagcatg
     2401 ggcgtgatca ggcgtgc
//
LOCUS       DASQWN010000448         2594 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_79228, whole genome shotgun sequence.
ACCESSION   DASQWN010000448 DASQWN010000000
VERSION     DASQWN010000448.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2594)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2594)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2594
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_79228"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..481
                     /locus_tag="VE686_08455"
     CDS             <1..481
                     /locus_tag="VE686_08455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012497741.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY84516.1"
                     /translation="VQEAILLEGVEASDATVVRHEGLFWMFAATRDGAGSYSDMLSIF
                     MADRLLGPWRPHPRNPVLIDAAGARPAGAFVRRNGRLWRPVQDCRGGYGTGLGLAEVT
                     RLDRDGFAQELHTMLRPCPEWPGRKLHTLNRAGRLEVIDGSGLSPRLPLPTSALSFV"
     gene            649..2064
                     /locus_tag="VE686_08460"
     CDS             649..2064
                     /locus_tag="VE686_08460"
                     /inference="COORDINATES: protein motif:HMM:TIGR03025.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003678 - DNA helicase activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA];
                     GO_process: GO:0032508 - DNA duplex unwinding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="exopolysaccharide biosynthesis polyprenyl
                     glycosylphosphotransferase"
                     /protein_id="HYY84517.1"
                     /translation="MDQTNPLLTTSRPRTIGVWHLFGGAVALAEGGLLVLVSVGCGTL
                     YHLTQYATLGDLPTHLSVGAALALIFVTSCALQGHYRLAAYIARSRRMRWPIATWAVS
                     VLYAVALGFLVKAASDVSRGTTILLALFGLLAVILWRRLVVRLVALASKRSRIAARRV
                     LLIGSDAAIDAFVRQHEPWKLGFQIVARCGIGEGDMQRELDRAAEFGRTLEPDDVFIV
                     LPWSDTETIERIVDRMITLPAAIHLGPERILDRFREVHISKVSSMATLCLVQTPLSPI
                     EVFLKRSIDVIGSGVALLLLSPLLLLTAVAIKLDSKGPVLFRQLRFGFNQKPFWIIKF
                     RTMVVHDSGGEVPQAQRDDPRLTAVGRHLRRWNLDELPQLINVLLGDMSLVGPRPHAV
                     PHNLDFERRIVLYARRHNVKPGLTGWAQVNGFRGPTDTEQKLHGRLEYDLYYIDNWSI
                     GFDLAIIARTMISAKAYQNAH"
     gene            2054..>2594
                     /locus_tag="VE686_08465"
     CDS             2054..>2594
                     /locus_tag="VE686_08465"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY84518.1"
                     /translation="MLIEPVTTVEAFADVVEPPALQVAAEPRFDFLGTEYGRLFESSD
                     ATAFQHPLWLDGLYRNLAPPLGAEPLVITFRDGATGRLAAVVPLVRRNRGLLRMVEFA
                     DFGLTDYAGPVCSRDEWNRLVREPSASRAMLRALRPFDLLRIAKLREDGLDLRPLLGS
                     ASQSVMPSAAHDVALDGAFP"
BASE COUNT          358 a          928 c          838 g          470 t
ORIGIN      
        1 ggtgcaggag gcgatcctgc tcgaaggcgt cgaggcgagc gacgccacgg tcgtgcgcca
       61 cgagggcctg ttctggatgt tcgccgcgac ccgggacggc gccggctcgt actcggacat
      121 gctgtccatc ttcatggcgg accgcctgct cgggccgtgg cggccgcacc cgcgcaatcc
      181 ggtcctcatc gacgccgcag gcgcgcgtcc ggccggcgcc ttcgtgcgcc ggaacggacg
      241 gctctggcgg ccggtgcagg actgtcgcgg ggggtacggc acaggccttg gcctcgccga
      301 ggtcacccgg ctcgaccgcg acggctttgc acaggagctc cacacgatgc tgcggccctg
      361 ccccgagtgg ccgggccgca agctccacac cctgaaccgc gccggccgcc tcgaggtcat
      421 cgacggctcg ggcctttcgc cgcgcctgcc gcttccgacg agcgcgctct ccttcgtatg
      481 acttcggtcc tgatcggctg tcgcattcag ggacacttcc accggcacgg gattggcaca
      541 gccgggcgtt gagggctgcc ctggaggcgc gccgctcgga tcgccggtgg aggtccaatg
      601 cgtcgcgtgc tcgcggatgg ccctcgcgaa ccccggaccc cgaacgcgat ggaccagacg
      661 aaccccctcc tgacgacgag ccgtccgcgc actatcggcg tctggcatct gttcggaggc
      721 gccgtagcgc tcgcggaggg gggccttttg gtgctcgtct ccgtcggctg cgggacgctg
      781 taccacctta cccaatatgc aacccttggc gacctcccga cgcacctctc cgtcggcgcc
      841 gcgctggcgc tgatcttcgt gacctcgtgc gcgctgcaag gtcattaccg cctcgcggca
      901 tacatcgccc ggtcgcgccg gatgcggtgg cccattgcga cctgggctgt ctcagttctg
      961 tacgccgtgg ctctaggatt tttggtcaaa gcggcgagcg acgtgtcgcg cgggacaacc
     1021 atcctgctgg cgctgttcgg ccttctggcg gtgatccttt ggcgccggct cgtcgtccgc
     1081 ctggttgcgc tcgcgagcaa gcgctcgcgc atcgctgccc ggcgcgtgct gctcatcggc
     1141 tccgatgccg caatcgatgc cttcgtgcgt cagcacgagc cctggaagct gggcttccag
     1201 atcgtcgcgc gatgcgggat cggcgaggga gacatgcagc gcgagctcga ccgagccgct
     1261 gagttcggcc gaacgctcga gcccgacgat gtcttcatcg tgctgccctg gtccgacacc
     1321 gagaccatcg agcgcatcgt cgacaggatg atcaccctac cggcggcgat ccacctcggc
     1381 ccggagcgca tcctcgatcg cttccgcgag gtgcacatct ccaaggtctc gtcgatggcc
     1441 accctgtgcc tggtgcagac acccctgtcg ccgattgagg tgttcctgaa gcggtccatc
     1501 gacgtgatcg gctcgggcgt ggcgctgctc ctcctctccc ctctgctgct tctgaccgcg
     1561 gtcgcgatca agctcgacag caaggggccg gtgctgtttc gacagctgcg tttcggcttc
     1621 aaccagaagc ccttctggat catcaagttc cggaccatgg tggtgcacga ctcgggaggc
     1681 gaggtcccgc aggcacagcg cgacgacccg cgcctcacgg cggtcggccg ccacctgcgc
     1741 cgctggaacc tcgacgagct gccgcagctc atcaacgttt tgctgggaga catgtcgctc
     1801 gtcgggccgc ggcctcacgc cgtgcctcac aacctcgact tcgagcgccg catcgtcctc
     1861 tacgcccgac gtcacaacgt gaagccgggc ttgaccgggt gggcgcaggt caacggcttt
     1921 cgcgggccga ccgacacgga gcagaagctc cacggccgcc tcgagtacga cctctactac
     1981 atcgataact ggtcgatcgg tttcgacctc gccatcattg cgcggaccat gatttcagcc
     2041 aaggcttatc aaaatgctca ttgagccggt cacgaccgtc gaggcctttg cagacgttgt
     2101 cgaaccgccg gccttgcagg tggcagcgga gcctcgcttc gacttcctgg gtaccgagta
     2161 cgggcgtctc ttcgagagct cggacgcgac cgcgttccag catccgctct ggcttgacgg
     2221 cctctaccgc aatctcgcgc cacccctcgg cgctgagccc ctcgtgatca ccttccgaga
     2281 cggggcgacc ggccggcttg cggccgtcgt tcccctggtg cgccgcaacc gcggcctgct
     2341 tcgcatggtg gagttcgccg acttcggcct caccgactac gctgggccgg tctgcagccg
     2401 cgacgagtgg aaccggctgg tgcgcgagcc cagcgcgtcg cgggcgatgc tgcgggcgtt
     2461 gcgccctttc gaccttctgc ggatcgccaa gctgcgcgag gatggcctcg acctacggcc
     2521 gttgctcggc tcggcctcgc aatcggtcat gccttccgcg gcgcacgacg tcgcgctcga
     2581 cggagccttt cccc
//
LOCUS       DASQWN010000449         6218 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1168979, whole genome shotgun sequence.
ACCESSION   DASQWN010000449 DASQWN010000000
VERSION     DASQWN010000449.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 6218)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6218)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6218
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1168979"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(226..1407)
                     /locus_tag="VE686_08470"
     CDS             complement(226..1407)
                     /locus_tag="VE686_08470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009764751.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PA0069 family radical SAM protein"
                     /protein_id="HYY84519.1"
                     /translation="MTIRLRQTARDAVRATAIGRRVPVAASEFARRVDALDPVVEEER
                     RRGRGAVTNPAGRYEPVRAEAFDDGWTPDEEIPPVQTQVTIEKPRTIITRNDSPDISF
                     DRSINAYRGCEHGCVYCFARPTHAYQGLSPGLDFETKLFAKPNAAELLEKELSAAGYE
                     PKTMAIGTNTDPYQPIEKRFRITRGVLEVLARTNHPVGIVTKSALVTRDIDILAPMAE
                     RGLAKVAISVTTLDPKLARTMEPRAATPRKRLETIRRLTDAGIPVSVLVAPIIPAVND
                     PEIEDILQAVEAAGAREAGYVLLRLPHELKEIVRDWLSENYPDKVKHVFSLVQDTRDG
                     KAYDSSWGKRMTGAGPYAWLIGRRFEAACARLGLNKRRDRLRTDLFIPPAKKTGQLSL
                     F"
     gene            1514..2017
                     /locus_tag="VE686_08475"
     CDS             1514..2017
                     /locus_tag="VE686_08475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020092663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY84520.1"
                     /translation="MITALILADGRLEALATTVSALIPAVADGLVADAVVLSREHDPR
                     IARAAEAVGAAFLVVPSGREPWVAGAAGARRDWVLCLGAGDLPSEGWIRAVDRFVALA
                     PPDRRFGRLPRRHSSLLGRLRGLASPPRRDAIRPGDVIHRSLLAERPRPRPITIGAFV
                     ERDPAFG"
     gene            2103..3347
                     /locus_tag="VE686_08480"
     CDS             2103..3347
                     /locus_tag="VE686_08480"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HYY84521.1"
                     /translation="MAGEANAAGRAAARQQIVFINAAHLLTHYSLLILPTAVLVMARP
                     GGAFGDDYGPIVALATGMFVLYGVGSLPQGWLAARIGRKALMAAFFIGTGLSLIAAGF
                     VSSPVLLALTLSAAGLFAAIYHPVGTAMLVEAASETPGRAIGVNGVFGNFGVALAPVV
                     TAFLAQQIGWRAAFVAPGIICVALGLAWLRVPAYDHHAHHGTKPFPQIPASLVRRAVV
                     VLLLIAVVSGLVFNAFTIIIPKLIQERLASDPRLLPVVGTLAFLVTICGAATQFTVGR
                     LIDRKTLKRVFLPMAITLPPAMGLLAFADGWPVLVLAGICAAVIFGQVTVNESMTARY
                     ISPALRTKMYSVRFFVGFLGSAAAAPLVAYLHERTGDLFAVTLTLAAFTLVTVACALF
                     FPDRREELKPELWSAAAPVAAE"
     gene            complement(3351..4235)
                     /locus_tag="VE686_08485"
     CDS             complement(3351..4235)
                     /locus_tag="VE686_08485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018261265.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="neutral zinc metallopeptidase"
                     /protein_id="HYY84522.1"
                     /translation="MRWEDYGSSANVEDRRGGGMGLPGGVGGLGIGGMIVLTLIGWAL
                     GIDPRILIGGAEMATRGGGGGYTQQEPERRTGAPPTDQQGRFASAILKSTEDVWSQVL
                     PNQTGRPYPPTTMVLYTGGTRSGCGAAQSAMGPFYCPLDKRVYLDVTFFREMEQRFRA
                     GGEFAYAYVIAHEVGHHLQNVLGILPKVQQRQREVDRAGANQLSVRVELMADCLAGVW
                     AMSSNERYKDLTQADIQQAIAAASAIGDDQLQKRSQGYAVPDSFTHGSSEQRVRWFMT
                     GFKSGQVKACDTFRTARL"
     gene            4380..5657
                     /gene="glgC"
                     /locus_tag="VE686_08490"
     CDS             4380..5657
                     /gene="glgC"
                     /locus_tag="VE686_08490"
                     /EC_number="2.7.7.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011155949.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008878 - glucose-1-phosphate
                     adenylyltransferase activity [Evidence IEA];
                     GO_process: GO:0005978 - glycogen biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-1-phosphate adenylyltransferase"
                     /protein_id="HYY84523.1"
                     /translation="MRPRTTNSAPLARHAMAYILAGGRGSRLVELTDRRAKPAVYFGG
                     KSRIIDFALSNALNSGIRKIAVATQYKAHSLIRHLQRGWNFFRPERNESFDILPASQR
                     VSEDLWYAGTADAVYQNIDIIESYGPQYIVILAGDHVYKMDYEPMLQQHVEQGADITV
                     GCLEVPRAEATGFGVMGVDENDRIVSFLEKPKDPPGIPGQPDMALASMGIYVFETAFL
                     FEQLRRDAADPASSRDFGKDIVPYLVRHGKAVAHRFARSCVRSSAEAEAYWRDVGTLD
                     AYWQANIDLTGVLPALDLYDQEWPIWTYGEITPPAKFVHDDDGRRGHAVDSLVSGGCI
                     VSGSSVCRSLLFTGVHVHSFCEIEGAVVLPYVDIGRSARLSKVVIDRGVQIPPGLVVG
                     EDPERDAQRFRRTESGVCLVTQEMIDRLPDAAS"
     gene            5654..>6218
                     /locus_tag="VE686_08495"
     CDS             5654..>6218
                     /locus_tag="VE686_08495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011662248.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycogen/starch synthase"
                     /protein_id="HYY84524.1"
                     /translation="MKVLAVASEVFPLVKTGGLADVAGALPRALVREGVETRTLVPGY
                     PAVLKQAGAFETAHRFDDLFGGPARLLAGEAAGLDLFVLDAPHLYGRPGGPYAGPDSA
                     DWPDNAQRFAALSWAAARLGRGLVEAYAPDVVHAHDWQGGLAPAYLAVDGGPRPGTVV
                     TIHNLAHQGVFPAGLLDELRLPPSAFAV"
BASE COUNT          850 a         2212 c         2127 g         1029 t
ORIGIN      
        1 cggacgtagg gcgtcagcgc acgatattcc tatcctagga gcgtgacgct gtcaaggtga
       61 ggcggcggtt ggccctcacc cggtcggctt cgccgactcg acctctcccg caagcgggag
      121 aggggacccg cccttcgcct cgcccgcgaa gcgggagagg tcgagtcggc gcttcagcgc
      181 cgaccgggtg agggcggtgg ccaaatccga gcaaagacct gagcgtcaga acaggctcag
      241 ctggcccgtc ttcttcgcgg gcgggatgaa gaggtcggtg cgcaggcggt cgcggcgctt
      301 gttcaagccg aggcgcgcgc atgcggcctc gaagcggcgg ccgatgagcc aggcgtaggg
      361 accggcgccg gtcatgcgct tgccccagga cgagtcgtag gccttgccgt cccgggtgtc
      421 ctgcacgagc gagaacacgt gcttgacctt gtcggggtag ttctcggaga gccagtcgcg
      481 gacgatctcc ttgagctcgt gcggcagccg cagcagcacg tatccggcct cgcgcgcccc
      541 agcggcctcg acggcctgga ggatgtcctc gatctcgggg tcgttcacgg ccgggatgat
      601 cggcgccacg agcaccgaca ccgggatgcc ggcgtcggtg agccggcgaa ttgtctcgag
      661 ccgctttctc ggggtggccg cccggggctc catggtgcgc gcgagcttcg gatcgagcgt
      721 cgtcaccgag atcgcgacct tcgcaagccc gcgctccgcc atcggtgcga ggatgtcgat
      781 gtcgcgcgtg acgagggccg acttcgtgac gatgccgacg gggtggtttg tccgcgcgag
      841 cacctcgagc acgccgcggg tgatgcggaa gcgcttttcg atcggctggt acgggtccgt
      901 gttggtgccg atcgccatgg tcttcggctc gtagccggcg gccgacagct ccttttccag
      961 gagctcggcc gcgttgggct tggcgaacag cttcgtctcg aaatcgaggc cgggcgagag
     1021 cccctggtaa gcgtgggtcg ggcgcgcgaa gcagtacacg cagccgtgct cgcagccgcg
     1081 gtaggcgttg atggagcggt cgaacgagat gtccggcgag tcgttgcggg tgatgatcgt
     1141 gcgcggcttc tcgatggtga cctgcgtctg gacgggcggg atctcctcgt cgggcgtcca
     1201 gccgtcgtcg aacgcttcgg cgcgaaccgg ctcgtagcgt cccgccggat tggtgaccgc
     1261 accgcgccct cgcctgcgct cctcctcgac caccgggtcg agcgcatcga cacggcgcgc
     1321 gaactccgag gccgccacag gcacgcgcct gccgatggcg gtcgcacgca ccgcgtcccg
     1381 tgccgtctgt cgcaaccgta tggtcatcac gggtctcgtg tttgaagcga atcgctcccg
     1441 cgccgaaccg caatagaacg tacagggaac aaacgcaagc cgtcagttgc cgagccgggg
     1501 tatccttgcg gccatgatca cggcactcat ccttgccgac ggacgcctcg aagcgctcgc
     1561 gaccaccgtt tccgctctca tccccgccgt cgcggacggt ctcgtggcgg atgccgtcgt
     1621 gctgtcgcgg gagcacgacc ctcggatcgc gcgcgcggcg gaggcggtcg gcgcagcgtt
     1681 cctcgtcgtg ccctcggggc gcgagccgtg ggtcgcaggc gccgccggcg cgcgtcggga
     1741 ctgggtcctg tgtctcgggg ccggagacct tccgtcggag ggctggatac gggccgtcga
     1801 ccgtttcgtc gcgcttgcgc cgccggaccg gcgcttcggc cgcctgccgc ggcggcattc
     1861 cagccttcta gggcggctgc ggggcctcgc ttccccgccc cggcgggacg cgattcggcc
     1921 gggcgacgtc atccatcgca gcctgctggc cgagcggccg cgcccccgcc cgatcaccat
     1981 cggcgccttc gtcgagcgcg atcccgcctt cggttgagcc gcgtgccgcc ccgccctgga
     2041 acttgcgcgc gctatggagt attcgcgaac gaggcgtgag acgcgcgcga agggactgga
     2101 cgatggccgg agaagcgaac gccgcggggc gggcggcggc acggcagcag atcgtcttca
     2161 tcaacgccgc gcacctcctg acgcattatt ccctgctgat cctcccgact gccgtgctgg
     2221 tgatggcgcg gccgggcggc gccttcggcg acgactacgg cccgatcgtc gcgctcgcga
     2281 ccggcatgtt cgtgctctac ggcgtcggct cgctacccca gggctggctc gccgcacgca
     2341 tcggccgcaa ggcgctcatg gccgcgttct tcatcggcac gggactgtcg ctcatcgcgg
     2401 caggcttcgt ctcctcgccg gttctgctcg cactcacgct ctccgctgcg ggccttttcg
     2461 cggcgatcta tcacccggtc ggcacggcaa tgctcgttga ggccgcgagt gagacgcccg
     2521 gccgcgccat cggcgtcaac ggcgttttcg gcaacttcgg cgtcgcgctc gcaccggtcg
     2581 tcaccgcgtt cctggcccag cagatcggct ggcgcgccgc tttcgtcgcg ccggggatca
     2641 tctgcgtcgc cctcgggctc gcctggctgc gcgtgcctgc ctacgaccac cacgcccacc
     2701 acggcacgaa gcccttcccc cagattcccg cttctttggt acgccgggcc gtggtcgtgc
     2761 tcctcctgat cgcggtggtg tcgggcctcg tcttcaacgc cttcacgatc atcatcccga
     2821 agctcattca ggagcggctg gcgagcgacc cgcgcctgct ccccgtggtc ggtacgctcg
     2881 ccttcctggt gacgatctgc ggtgcggcca cgcagttcac cgtcgggcgg ctcatcgacc
     2941 gcaagaccct caagcgggtt ttcctgccga tggcgatcac gctgccgccc gccatgggac
     3001 tgcttgcctt cgcggacggg tggcccgtcc tggtactcgc cggcatctgc gccgccgtga
     3061 tcttcggcca ggtcacggtc aacgaaagca tgacggcgcg ctacatctcg ccggcgctgc
     3121 ggaccaagat gtactcggtc cgcttcttcg tcggtttcct cggcagtgct gcggcggcgc
     3181 cgctcgtcgc gtacctgcat gagagaaccg gcgacctctt cgccgtaacg ctcacgctcg
     3241 cggcgttcac gctcgtcacg gtcgcctgcg cgctgttctt ccccgaccgg cgggaggagc
     3301 tgaagccgga gctttggagc gccgccgctc ccgttgcggc cgagtgagcc ttacagccgc
     3361 gccgtccgga aggtgtcgca ggccttcacc tgcccgctct tgaagccggt catgaaccag
     3421 cgcacgcgct gctccgagga gccgtgcgtg aaggagtcgg gcacggcgta gccctgcgac
     3481 cgcttctgga gctggtcgtc gccgatggcg ctggcggccg cgatcgcctg ctgaatgtcg
     3541 gcctgggtca ggtccttgta gcgctcgttg gaactcatcg cccagacgcc ggcgaggcaa
     3601 tcggccatca gctcgacgcg aaccgacagc tggttggcac cggcgcggtc gacctcgcgc
     3661 tggcgctgct gaaccttcgg caggatgccg agcacgttct ggagatgatg accgacctcg
     3721 tgggcgatga cgtaggcata ggcgaattcg cccccggccc ggaagcgctg ctccatctcg
     3781 cggaagaagg tcacgtcgag gtacacgcgc ttgtcgagcg ggcagtagaa cggccccatc
     3841 gccgactgcg cggcgccgca gcccgagcgc gtgccgccgg tgtagagcac catggtggtc
     3901 ggggggtacg gccgaccggt ctggttcggc aggacctgcg accacacgtc ctcggtgctc
     3961 ttcaggatcg cggaggcgaa gcggccctgc tggtccgtgg gaggcgcgcc ggtgcgtcgc
     4021 tcgggctcct gctgggtgta cccgccgccg ccgccccggg tcgccatctc ggcgccgccg
     4081 atcaggatgc gtggatctat gccgagagcc cagccgatca gggtcagcac gatcatgccg
     4141 ccgatgccga ggccgccgac gccgcccggc aggcccatgc cgccgccgcg ccgatcctcg
     4201 acgttcgcgg aacttccgta gtcttcccag cgcatgcgcg gatcccgaga ggcgtggcac
     4261 ggcgcagctt cgccgcaagc agcatgtagt aaagctgcgg cggcaccgcc agttccgacg
     4321 ggttcaggag acgcgcggag cctgataggg tctcgtcaaa gagctcgagg aaacggccga
     4381 tgcgcccccg caccacgaac agcgctcccc tggcgcggca cgcaatggcc tacatcctcg
     4441 ccggcgggcg cgggtcccgc ctcgtcgagc tcaccgaccg tcgtgcgaag cccgccgtct
     4501 acttcggcgg caagtcgcgc atcatcgact tcgcgctgtc gaacgcgctg aactccggca
     4561 tccgcaagat cgcggtcgcc acgcagtaca aggcgcacag cctgatccgg cacctgcagc
     4621 ggggctggaa cttcttccgg ccggagcgca acgagagctt cgatatcctg ccggcgagcc
     4681 agcgcgtgtc cgaggacctc tggtacgccg gcacggcgga cgccgtgtac cagaacatcg
     4741 acatcatcga gagctacggg ccgcagtaca tcgtcattct ggcgggcgac cacgtctaca
     4801 agatggacta cgagcccatg ctccagcagc acgtggagca gggcgccgac atcaccgtcg
     4861 gctgcctcga ggtgccccgg gccgaggcga ccggcttcgg agtgatgggc gtggacgaga
     4921 acgaccgcat cgtctcgttc ctcgagaaac ccaaggaccc gcccggcatt ccgggacagc
     4981 ccgacatggc gctcgccagc atgggcatct acgtcttcga gacggcgttc ctgttcgagc
     5041 agctcaggcg agacgcggcc gacccggcct cgagccgcga tttcggcaag gacatcgtcc
     5101 cctacctcgt gcggcacggg aaagccgtcg cgcaccgctt cgcgcgctcg tgcgtgcgct
     5161 cctccgccga agcggaggcc tattggcgcg acgtcggcac cctcgatgcc tattggcagg
     5221 cgaacatcga tctcacgggc gtccttccgg ccctcgacct ctacgaccag gagtggccga
     5281 tctggaccta cggcgagatc accccgccgg cgaagttcgt gcacgacgat gacggccgcc
     5341 gggggcatgc cgtcgactcg ctcgtgtcgg gcggctgcat cgtgtcgggc tcgtcggtct
     5401 gccgctccct cctgttcacg ggagtgcacg tgcactcctt ctgcgagatc gaaggcgccg
     5461 tggtgcttcc ttacgtcgac atcggccgct ccgcccggct gtcgaaggtg gtcatcgacc
     5521 gcggcgtgca gatcccgccc ggccttgtgg tcggcgagga tcccgagcgc gacgcgcagc
     5581 gcttccggcg caccgagagc ggcgtctgcc tcgtgacgca ggagatgatc gatcggctgc
     5641 ccgacgcggc ctcatgaagg tcctcgccgt cgcctccgag gtcttccccc tcgtcaagac
     5701 gggaggtctc gccgacgtcg cgggcgccct cccccgcgcc ctcgtccgcg aaggcgtcga
     5761 gacgcgtacg ctcgtgcccg gctatccagc cgttctgaag caggccggcg cgtttgagac
     5821 ggcgcatcgc ttcgacgacc tgttcggcgg ccctgcccgg ctgctcgccg gcgaagcggc
     5881 cggcctggac ctcttcgtcc tcgacgcgcc gcacctctat gggcgtccgg gcgggccgta
     5941 cgccgggccc gacagcgcgg attggcccga caacgcgcag cgcttcgcgg cgctctcatg
     6001 ggcagcggcc cggctcgggc gcgggctcgt cgaggcctac gcgcccgacg tcgtccatgc
     6061 gcacgactgg cagggcggac tggcgccggc ctacctcgcg gttgacggcg ggccgcgccc
     6121 cggcacggtc gtcaccatcc acaacctcgc ccaccagggc gttttcccgg ccggcctcct
     6181 cgatgagctt cgcctgccgc cgtcggcctt cgccgtgg
//
LOCUS       DASQWN010000450         3008 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_773975, whole genome shotgun sequence.
ACCESSION   DASQWN010000450 DASQWN010000000
VERSION     DASQWN010000450.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 3008)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3008)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3008
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_773975"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(1..483)
                     /locus_tag="VE686_08500"
                     /pseudo
     CDS             complement(1..483)
                     /locus_tag="VE686_08500"
                     /inference="COORDINATES: protein motif:HMM:NF033545.0"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
     gene            complement(480..923)
                     /locus_tag="VE686_08505"
     CDS             complement(480..923)
                     /locus_tag="VE686_08505"
                     /inference="COORDINATES: protein motif:HMM:NF024776.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HYY84525.1"
                     /translation="MAGKSPIMADEEQRQELMALSHSRDRGEADRARAILLTLSGWTS
                     GEIAQAFGVREDTVRFWRSAFLRGGIEALKKSVAPGPAPVKAERALAVAEEVLSGPVA
                     DRPNWTLPRLADEIETRAGVRISHSRLSVVLRQKGISAGGGPATP"
     gene            complement(1016..1297)
                     /locus_tag="VE686_08510"
     CDS             complement(1016..1297)
                     /locus_tag="VE686_08510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018263395.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family transcriptional regulator"
                     /protein_id="HYY84526.1"
                     /translation="MAQRGGVCHPDPGFTEKQGQYLAFIYAYTRVNARPPAETDMQRY
                     FNVTPPSVHQMVLTLERAGLIRRQPGAARSIEVLVAPERLPVLRRSKPS"
     gene            1323..2465
                     /locus_tag="VE686_08515"
     CDS             1323..2465
                     /locus_tag="VE686_08515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076611722.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IS630 family transposase"
                     /protein_id="HYY84527.1"
                     /translation="MHIRYWIELSEAERTELQVMLSGGRHAVRRLKRAQILLATDAGQ
                     SDEAIATSVAVSASTVRRTKRRFVEGSLERALSEERRPGARRKLSGQEEALLVATACA
                     DPPEGRARWTLELLAGELVRLTEHETLSRETVRRRLAENALKPWREEMWCIPHIDGEF
                     VARMEDVLDLYAEPPDPTCPVVCLDESPLQLIGETRQPIPAAPGQPARYDYEYRRCGT
                     VNLFVVMDVHRPWRRVTVTERRTAQDYAARLRELVDVDYPDAARIRVVQDNLSTHTPG
                     ALYEAFPAAEARRILRRLEFHSTPKHASWLNMVEIEIGVLKGQCLDRRIETRARLEAE
                     IAAWERDRNAAGARISWMFTTAKARAKMGQAYPQETVAPNPSTKPS"
     gene            2561..3008
                     /locus_tag="VE686_08520"
                     /pseudo
     CDS             2561..3008
                     /locus_tag="VE686_08520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076611879.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS5 family transposase"
BASE COUNT          508 a         1014 c         1018 g          468 t
ORIGIN      
        1 gcgccagagg gcctcgatgt cgttcaactc cggggcatac ttcggcagcc actcgaccgt
       61 gagccagtgg gcgcgcgcgg cgagggcggc gcgggtcgcc ttgctggtgt ggatcgggcc
      121 gttatccagg acgagcacga tcggcgtgag cgccaccccg agcttgggcc catagcgccg
      181 atcgacctcc tccagcagag caaggaagtc tgagctacgc ttagtccggc tggtgcgcac
      241 gatcaggtcg cgccgcgccc agtcgagcac cccgagcatc gctaccttgg cgctttggcc
      301 cggagccgga atgcgtagat tggccccttt ctgggcccag acatgcgccc ggtccggatg
      361 ggtgagcgct tcggactcgt cgccgaacag gagcacgatg tcgcccgcct cggcctgcgc
      421 tttgagcagc tttcggcgca ggcccgcccg gtccacagcg tcaggatcct gccgcccctt
      481 tagggtgtgg cggggccgcc gccagcggaa atcccctttt ggcgcagcac gacggacagc
      541 cgcgagtggg agatgcgcac gcccgcgcgc gtctcgatct catccgcgag acggggcagt
      601 gtccagttcg ggcgatccgc cacaggccca gacaggacct cctcggctac ggccaacgcc
      661 cgctcggctt tgaccggagc tggccccggc gcgaccgatt tcttcaaggc ttcgatcccg
      721 cccctcagga aggcgctgcg ccagaagcgc accgtatcct cgcgcacccc gaaggcctgg
      781 gcgatctcgc cgctggtcca gcccgacagg gtgagcaaga tcgcccgcgc ccggtcggcc
      841 tcgccgcgat cccgcgagtg gctcaacgcc atcagctcct gcctttgctc ctcgtccgcc
      901 ataatcggag acttgcccgc catgatccca atctcaaatc agatcaaacg acggaagcac
      961 gctctacatt cgttggccag ctcaggcaaa cctgcttagt agctctgaac agtgattatg
     1021 acggtttgga tcggcgcagg acgggcaagc gttcaggggc gactagcacc tcgatgctgc
     1081 gcgccgcccc cggctggcgg cggatcaatc cagcgcgctc cagcgtgagc accatctggt
     1141 gcacactggg cggcgtcaca ttgaagtagc gctgcatatc ggtctcggcg ggcgggcggg
     1201 cgttcacgcg cgtgtaggcg tagatgaaag ccaagtactg cccctgcttc tccgtgaagc
     1261 ccggatccgg gtgacacacg ccgcctctct gcgccatggc ggcctcccac gcggaggctg
     1321 ttatgcacat acgctactgg atcgagctga gcgaggccga gcgcactgag ctccaggtca
     1381 tgcttagcgg cggccggcac gcggtacgcc ggttgaagcg agcacaaatc ctgctagcca
     1441 ccgatgcagg ccagagcgac gaggccatcg cgaccagcgt cgcggtgagc gcctccacgg
     1501 tgcggcgcac caagcgccgc tttgtggagg gcagcttgga gcgcgcgctc agcgaggagc
     1561 gccggccggg tgctcggcgc aagctctcgg gccaggaaga ggcgctgctg gtcgccaccg
     1621 cctgtgccga tccgcccgaa gggcgcgccc gctggacgct cgaactcctg gccggcgaac
     1681 tggtgcgcct gaccgagcac gagacgctct cacgcgagac ggtgcggcga cggctggccg
     1741 agaacgcgct caagccctgg cgggaggaga tgtggtgcat cccccacatc gacggcgagt
     1801 tcgtcgcgcg catggaggac gtgctcgatc tctacgccga gccgcccgac cccacgtgcc
     1861 cggtcgtgtg cctggacgag agcccgctgc agttgattgg cgagacacgc cagccgatcc
     1921 cggccgcgcc ggggcagccg gcgcgctatg attacgagta ccggcgctgc ggcaccgtga
     1981 acctgttcgt cgtcatggac gtgcaccggc cctggcgccg ggtgacggtc accgaacggc
     2041 gcacagcaca agactatgcg gcgcgtctgc gcgagttggt ggacgtggac tatcctgacg
     2101 ccgcgcgcat ccgggtggtg caagacaacc tgtccacgca cacgcccggg gcgctgtacg
     2161 aggcgttccc ggccgccgag gcgcgacgca tcctgcgccg gctggagttc cactccacgc
     2221 ccaagcacgc cagctggctc aacatggtgg agatcgagat cggggtgctc aaaggccagt
     2281 gcctggaccg gcgcattgag acccgcgccc ggctcgaggc cgagatcgcc gcctgggagc
     2341 gggatcggaa cgcggccgga gctcggatca gctggatgtt caccaccgca aaggcccgcg
     2401 ccaagatggg tcaggcctac ccacaggaaa ccgtggctcc caacccctcg accaaaccgt
     2461 cataatcact gtgcagagct actagggcgt gtcctcaatt agggcttttg ggttggggcc
     2521 atttctggtt cagggacggt cagcgatgag gagctgaccg atgcgacgct acggcgtgcg
     2581 ggacgatcaa tgggcgcgga tccaggacct gctgcctggg cgtctgggcc atgtgggcgt
     2641 gaccgccaaa gataaccggc tgtttgtcga ggccgtgctg gaccgcgatc ggactggcat
     2701 cccctggcgc gatctgcccg agcggttcgg ctgtggggtc aaggtccaca cccgcttcag
     2761 ccgctgggcc aaggctggcg tgtgggagcg ggtgttccag cacgtggcag cggacgctga
     2821 caacgagtac gcgatgatcg acagcaccat cgtgcgtgct catcagcacg cggccggcgc
     2881 ccccaaaaag ctgggcctga ccaggcgatc gggcgcagca agggtgggct gaccaccaag
     2941 atccacgcgc tcgtggatgc gctcggcaat ccgactggct ttcatctcac cggcggtcag
     3001 gagcacga
//
LOCUS       DASQWN010000451         2161 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1169341, whole genome shotgun sequence.
ACCESSION   DASQWN010000451 DASQWN010000000
VERSION     DASQWN010000451.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2161)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2161)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2161
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1169341"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            231..854
                     /locus_tag="VE686_08525"
     CDS             231..854
                     /locus_tag="VE686_08525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011157532.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TRAP transporter small permease subunit"
                     /protein_id="HYY84528.1"
                     /translation="MQALLAVSRAIDGLNERIGRVTAWAIVAAVLVSAINAIIRKVFE
                     ISSNAWLELQWYLFGAVFMLCAAWTLRANEHIRIDIISSRLSYRTRNIVEMIGHLFFL
                     LPFVVVMIYLSTPFFLRSAQSGEVSTNVGGLLIWPAKGLILLGFILLGLQWFSETVKR
                     IAVMRGELRDDHLSASHHAAAEAEAERLLAAIEGDTKADIPSDAAAR"
     gene            894..>2161
                     /locus_tag="VE686_08530"
     CDS             894..>2161
                     /locus_tag="VE686_08530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009491036.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TRAP transporter large permease subunit"
                     /protein_id="HYY84529.1"
                     /translation="MAELIAANLAPIMFAALVVFLLLGYPVAFSLAANGLLFFVIAVE
                     LAPYAPHSIRLDWPLLQALPERIYQTMGNEVLLAVPFFTFMGLVLERSGMAEDLLDTI
                     GQLFGTVRGGLAYAVIFVGALLAATTGVVAASVISMGLISLPIMLRYGYDRRLASGVI
                     AASGTLAQIIPPSLVLIVMADQLGRSVGDMYEGAFIPGMVLAGLYSGYVFMATMVKPN
                     WAPGLPVDAIGYREPSGARGVWQLGVLVLFSAVVGYFILQQTTIRAGADFVILTICIS
                     VVVALVCALVNRFLGAQRIAISAVFAALVIAAYFYTVGTGHTSMALFVEMVAAAAVYA
                     LVVGVVERFTGLRLISRMAEQVTFVMVPPLLLIFLVLGTIFIGVATPTEGGAMGALGS
                     LILAATKRFLDKNPRRFNFELVRQATEATA"
BASE COUNT          284 a          773 c          681 g          423 t
ORIGIN      
        1 aagcgtccgg agccgcgagg ccgctcgtga cgtggaaccc gcggcgcctc ccctgctcgc
       61 cacggttcaa cccgtgacgg cggcccggga tgcggcgcga gttccatagc cgccgcaccg
      121 cccgcctccc gcttgtttca gtcggggcga tcagctagac cgcaaggcaa ctaagaacat
      181 gcctcccata cgcgccacgc gccgcgggcg ggctgccgag aggtgggtag gtgcaagcat
      241 tgctggcggt gagccgcgcg atcgacgggc tcaacgagcg catcggccgg gtgaccgcct
      301 gggcgatcgt cgccgccgtg ctggtgtcgg ccatcaacgc catcatccgc aaggtgttcg
      361 agatttcgtc gaacgcctgg ctcgagttgc agtggtacct tttcggcgcg gtgttcatgc
      421 tctgcgccgc gtggaccctg cgcgccaacg agcacatccg catcgacatc atctcgagcc
      481 ggctgtccta tcgcacccgc aacatcgtcg agatgatcgg gcacctgttc ttcctgctgc
      541 ccttcgtcgt cgtcatgatc tacctctcga cgccgttctt cctgcgctcg gcgcagtcgg
      601 gcgaggtctc gacgaacgtc ggcggcctgc tgatctggcc cgccaagggc ctcatcctcc
      661 tcggcttcat cctgctcggg ctgcagtggt tcagcgagac cgtgaagcgg atcgccgtca
      721 tgcgcggcga gttgcgcgac gaccacctca gcgcgagcca tcacgccgcc gcggaggccg
      781 aggcggagcg cctgctcgcc gccatcgagg gcgacaccaa agccgacatc ccgagcgacg
      841 cggcggcgcg ctagccgtcc gacgctcctc gtacctttgt tccggagcct ccgatggctg
      901 agttgattgc ggcaaacctc gcgccgatca tgttcgcggc gctggtggtc ttcctgctgc
      961 tgggataccc ggtcgcgttc tcgctcgccg ccaacgggct cctgttcttc gtcatcgccg
     1021 tcgagctcgc gccctacgct ccccattcga tcaggctcga ctggccgctg ctgcaggcgc
     1081 ttcccgagcg catctaccag accatgggca acgaggtgct cctcgctgtc cccttcttca
     1141 ccttcatggg gcttgtcctc gaacgctccg gcatggccga ggacctcctc gacaccatcg
     1201 gacagctgtt tggcaccgtg cgcggcggcc tagcctacgc ggtcatcttc gtcggcgcgc
     1261 ttctcgcggc gaccacgggc gtcgtcgccg cgtccgtgat ctccatgggc ctgatctcgc
     1321 tccccatcat gctgcgctat ggctacgacc ggcgtctcgc ctcgggcgtg atcgccgcgt
     1381 cgggcacgct cgcgcagatc atcccgccgt cgctcgtact catcgtcatg gccgatcagc
     1441 tcggccgctc ggtcggtgac atgtacgagg gcgcgttcat ccccggcatg gtactcgccg
     1501 ggctctactc cgggtatgtc ttcatggcga ccatggtgaa gccgaactgg gcgccggggc
     1561 ttccggtcga cgccatcggc taccgggaac cgagcggcgc ccgcggcgtc tggcagctcg
     1621 gcgtcctcgt gctgttctcg gcggtggtcg gctatttcat cctgcagcag acgacgatcc
     1681 gcgccggagc ggacttcgtc atcctcacga tctgcatttc cgtggtggtg gcgctcgtgt
     1741 gcgccctcgt caatcgcttc ctcggggcgc agcgcatcgc catctcggca gtgttcgccg
     1801 cgctggtcat tgcggcctat ttctacacgg ttggcacggg tcacacctcg atggccctgt
     1861 tcgtggagat ggtggccgcg gcggccgtct acgccctcgt ggtcggggtc gtcgagcgct
     1921 tcacgggcct gcgcctgatc tcgcgcatgg ccgagcaggt caccttcgtg atggtgcccc
     1981 cgctccttct catcttcctc gtgctcggga ccatcttcat cggcgtcgcc acaccgaccg
     2041 agggcggcgc catgggcgcg ctcggctcgc tcattctcgc ggctaccaag cgcttcctcg
     2101 acaagaaccc tcggcggttc aatttcgagc tggtgcgcca ggcgaccgag gcgacggcga
     2161 a
//
LOCUS       DASQWN010000452         2277 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1368845, whole genome shotgun sequence.
ACCESSION   DASQWN010000452 DASQWN010000000
VERSION     DASQWN010000452.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2277)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2277)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2277
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1368845"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1142
                     /locus_tag="VE686_08535"
     CDS             <1..1142
                     /locus_tag="VE686_08535"
                     /inference="COORDINATES: protein motif:HMM:NF024850.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015658 - branched-chain amino acid
                     transmembrane transporter activity [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0015803 - branched-chain amino acid
                     transport [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="branched-chain amino acid ABC transporter
                     substrate-binding protein"
                     /protein_id="HYY84530.1"
                     /translation="DLPMQGAARERSEQMVKAIRLELERRDWRAGSVRLGFKPCDDSV
                     AHTGEWDQGKCEQNARAYARDRQVIGLVGTYNSGCAEAMLPILNRAPAGAVPMVSPGN
                     TLVCLTKESASCEAGAPARYYPTGNRNYARVVPTDADQGAGLASFADDRRLRRVYVLQ
                     AKNDPTSTGQARAFTRATRKLGVKIVGQGTWDPKARGYRSLMEKVRSAKPDAVLLAGL
                     TEQNGGRLIQEKVAIVGSNDRVALLAPDGFAQQATITEAGPASRGMFVTTPGRSPKDL
                     PDQKFVQSLRERVGGRPLELYAPYAGQATAVLLDAIARFGNNRAAFSEGMHGTRIRDG
                     IVGDFSIDESGDTTLRAITVSRAGKEFSPVTEVNPPARLAAEARR"
     gene            complement(1685..2113)
                     /locus_tag="VE686_08540"
     CDS             complement(1685..2113)
                     /locus_tag="VE686_08540"
                     /inference="COORDINATES: protein motif:HMM:NF014600.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M15 family metallopeptidase"
                     /protein_id="HYY84531.1"
                     /translation="MAELARANGLPTPPSPGGNGRLPFSQQLSIHSPRGPAYLSPEAA
                     RAWEAMRQASLRELGVDLYPFGPDSAYRSYGKQVEAWRAFKAGGPEAAPPGTSAHGLG
                     KAVDLASLEMRRAIDKLGSRFGWAKTEGPSEWGHVNYVGG"
BASE COUNT          383 a          753 c          774 g          367 t
ORIGIN      
        1 cagaccttcc tatgcaagga gcagcccgtg agcgctctga gcagatggtc aaggcgatca
       61 gactggagct cgagcggcga gactggcggg cgggctccgt gcgcctcggc ttcaagccct
      121 gcgacgactc ggtggcacat accggtgagt gggatcaagg aaagtgcgag cagaacgccc
      181 gcgcctatgc ccgagaccgg caggtgatcg gtctcgtcgg gacatacaac tcgggctgtg
      241 ccgaggcgat gctgccgatc ctgaaccgcg ccccggcagg cgcggtgccg atggtgtcgc
      301 ccggcaatac gctggtttgc ctgacgaaag agtctgcttc ttgcgaggcg ggagcgcctg
      361 cgcgctatta cccaacaggt aatcgcaact acgcacgcgt cgttccgacc gacgccgatc
      421 agggggccgg cctcgcctcc ttcgcggacg accgtaggtt gcgccgcgtc tatgttctcc
      481 aagcaaagaa cgaccccacg agcacgggcc aggcccgtgc cttcactagg gcgacgcgaa
      541 agctcggcgt caagatcgtc ggtcagggaa cctgggaccc aaaggcacgc ggctaccgga
      601 gccttatgga gaaggtgagg tccgccaagc ctgacgccgt cctccttgcc ggcctaactg
      661 agcagaacgg cggacggctg atccaggaga aggtggcgat cgtcggctca aacgatcgag
      721 ttgccctgct cgccccggat ggcttcgcgc agcaggcgac gataactgag gcagggccgg
      781 cgtcccgcgg catgttcgtc acaacgcccg gccgatcccc gaaggatttg cccgatcaga
      841 agttcgtcca gagtctgaga gagcgggtgg gcggccgccc gctcgagctc tacgcgccgt
      901 atgccggcca ggcgacggcg gtcctgctcg atgcgatcgc tcggttcggc aacaaccgcg
      961 cggccttttc tgaggggatg cacggaacgc gcatcaggga cggcatcgtc ggggacttct
     1021 cgatcgatga gtccggcgac acgacgcttc gcgcaatcac cgtttcgcgg gcgggcaagg
     1081 aattcagccc agtgaccgag gtcaatccgc ccgccaggct ggccgctgag gctcgacggt
     1141 aagagcgcat ccccgccgcc gcgcaggcag gctcgcccgc gggacaatca gagtcgtctc
     1201 ttaacagtgc gggcgacaaa cttggacgcg acaacgagcg gctattcgac gctgtggctg
     1261 ggggccgccg aaccggtgcc gggaaacgag gccgccaagc tcccacggtg cgatcggctg
     1321 tcgatcgtca ggactgccca catggcgatt tccgcgtcag cgtagagcgc cgctccgcat
     1381 tgtgcagtta gacgatggag accaggattg aagttggctc tcgcaggccg tcgataatgt
     1441 cagcggaagg ggggagggtt tcgaaccgcc gacctccgcg ctgtaagcgc cggccttgct
     1501 cccgcacatc cgcagtgcct ccatgccagc gcaacagctt ctcgccttgc ttcttcgtcg
     1561 ggcgatcacc gtggcgccac cgtcgccgcg ttgctgtgcg cctctggtca ggcgcctagt
     1621 cgagatgccg tctcgccgtc gcgagttcca cgcctccggc tgccggacgg tactattgct
     1681 cgcctcagcc gccgacgtag ttgacgtggc cccactcgga ggggccctcg gtcttcgccc
     1741 acccgaagcg ggacccaagc ttgtcgatgg cccgccgcat ctcgaggctt gcgaggtcga
     1801 cggccttccc gagtccgtga gccgaggtcc ctggaggcgc cgcctcgggg ccgcccgcct
     1861 tgaacgctcg ccatgcctcg acctgcttcc cgtaggagcg gtaggccgag tccggtccaa
     1921 acggatagag gtcaacgccg agctcccgaa gcgacgcctg gcgcattgcc tcccacgcgc
     1981 gcgccgcttc aggggacaga taggcgggac cccgcgggct gtggatcgag agctgttgcg
     2041 agaaggggag acgaccattc ccgcccggcg atggcggagt cggaagtccg tttgcgcgcg
     2101 cgagctccgc catctgcaac gcaggttgtg tagcgcctgg agactcggtg gcacccggct
     2161 cgggatggtc agctggggct gctggcggct tcggcgctgt ggagggatcg ctcgcgagcg
     2221 gcgttccgtc cgcccaggcg gccggtgcaa ggagaaccgc gagcgctatc cctcccc
//
LOCUS       DASQWN010000453         2926 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1468765, whole genome shotgun sequence.
ACCESSION   DASQWN010000453 DASQWN010000000
VERSION     DASQWN010000453.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2926)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2926)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2926
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1468765"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(70..143)
                     /locus_tag="VE686_08545"
     tRNA            complement(70..143)
                     /locus_tag="VE686_08545"
                     /product="tRNA-Gln"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(109..111),aa:Gln,seq:ctg)
     gene            complement(268..1221)
                     /gene="dmeF"
                     /locus_tag="VE686_08550"
     CDS             complement(268..1221)
                     /gene="dmeF"
                     /locus_tag="VE686_08550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018042106.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008324 - monoatomic cation transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006812 - monoatomic cation transport
                     [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CDF family Co(II)/Ni(II) efflux transporter
                     DmeF"
                     /protein_id="HYY84532.1"
                     /translation="MHHHSIQRWRHEHVFLGERHQGHEHRTWLVVALTAVTMVAEIVG
                     GTLFGSVALVADGWHMSTHAAALAIAALAYRFARTYAHDPRFSFGTGKLGELAGFTSA
                     AILAVVAVLIAYESVARLVSPVAISFMQALPIAVIGLGVNLACAWLLHDHGHEHYVHR
                     DGDHDHDHHGDTNIRAAYVHVLADALTSVLAIVALVAGRIYGWVWLDPAIGLVGAAVI
                     AAWSVTLMRSAGAVLLDMVPSSALETLVRETLQGEGDRVTDLHLWRLGPGHMGLIVAI
                     VTDTPLPPDAYKARLSGIGGLSHVTVEVHPCPDHERMHLAA"
     gene            complement(1273..1728)
                     /gene="cueR"
                     /locus_tag="VE686_08555"
     CDS             complement(1273..1728)
                     /gene="cueR"
                     /locus_tag="VE686_08555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012319501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA];
                     GO_process: GO:0006878 - intracellular copper ion
                     homeostasis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Cu(I)-responsive transcriptional regulator"
                     /protein_id="HYY84533.1"
                     /translation="MNIGQAANASGVSAKMIRYYESIGLIPKSARRDSGYRDYGAADL
                     HRLGFIRRARDLGFSMDEIRQLLRLWSDQGRSSREVKDIALRHIADLDQRARQLTDMA
                     DALRHLADACEGDGRPDCPIIKGLEAGVSCDAATTTKRPAKRRVGQARA"
     gene            1837..2310
                     /locus_tag="VE686_08560"
     CDS             1837..2310
                     /locus_tag="VE686_08560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013912795.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF411 domain-containing protein"
                     /protein_id="HYY84534.1"
                     /translation="MITKHMTRRAFLAATAAVPALSSVRAEALPTMVVTKDPMCGCCT
                     GWAEHIREAGFPVEIVEVSDLARTKARLGVPQDLGACHTAEVGPYVVEGHVPADAVKR
                     LLAERPQGTGLAVRGMPVGSPGMEIEGSTPDTFDVVLFGPAGRSVFERYEGARRL"
     gene            2350..>2926
                     /locus_tag="VE686_08565"
     CDS             2350..>2926
                     /locus_tag="VE686_08565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013165314.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YHS domain-containing protein"
                     /protein_id="HYY84535.1"
                     /translation="MAHTSLDAHDHRHEHKKPGNGAPCCSSGAHGDSHHHGHAEAATE
                     HRVKDPVCGMWVDPHTAKHRAEHGGHPYYFCSAGCRAKFLADPARYLDPAAAAAKAEP
                     VPEGTIYTCPMHPEIRQVGPGSCPICGMALEPDVVTADTGPNHELVDMTRRFWIGLAL
                     ALPVVVLEMGAHLVGLDRLVPAQTSNWLQLAL"
BASE COUNT          480 a          986 c         1011 g          449 t
ORIGIN      
        1 aaatccaatc atgccgtttg ccccggaacc ccagtaagca aaaacacatt atttttcaaa
       61 ggcataaaat ggctggggga cctggattcg aaccaagact agcggagtca gagtccgctg
      121 ttctaccatt aaactatccc ccaactgacc gcagggtccc ggccttgcca agcggcggct
      181 cggggcgcac gcgcgtccgt cggacggggc tgagatagga cggcggcccg cccgggtcaa
      241 ccactcggcc cgcgcgcgac gcgcccgtca ggcggcgagg tgcatgcgct cgtggtccgg
      301 gcaggggtgg acctcgacgg tgacgtgaga caggccgccg atcccgctga ggcgcgcctt
      361 gtatgcatcc ggagggagcg gcgtgtccgt tacaatggcg acgatgagcc ccatgtggcc
      421 gggcccaagc cgccaaaggt gcaggtcggt gacgcgatcg ccctccccct ggagcgtttc
      481 ccgcacgagc gtttcgagcg ccgaactcgg caccatgtcg agaagcacgg ctcccgctga
      541 ccgcatcaag gtcaccgacc aggccgcaat gacggcggct cccactagcc cgatcgccgg
      601 gtcgagccag acccagccgt agatgcgtcc ggccaccaaa gccacaatgg cgagaaccga
      661 ggtcagggca tcggcgagca cgtggacgta ggccgcgcgg atgttcgtgt cgccgtggtg
      721 gtcgtgatcg tggtcgccat cgcggtgaac gtaatgctcg tgaccgtgat cgtggagcaa
      781 ccaggcgcac gcgaggttca cgccgagacc gatcacggcg atcgggagcg cctgcatgaa
      841 gctgatcgcc accgggctaa cgaggcgggc aacgctctcg taagcgatga gaaccgcgac
      901 cacggccagg attgccgcgc tcgtaaagcc tgccagttcc ccgagctttc ccgtcccgaa
      961 cgagaaccgc gggtcgtgcg cgtacgtgcg ggcgaagcgg tacgcgagcg ccgcgatcgc
     1021 aagcgccgcc gcatgggtcg acatgtgcca cccgtcggcg acgagcgcga cggagccgaa
     1081 gagggtgccg ccgacgatct cggcgaccat ggtcacggcc gtgagggcga cgacgagcca
     1141 ggtacggtgc tcgtgcccct ggtgccgctc gccgaggaag acgtgctcat gccgccagcg
     1201 ctggatggaa tgatggtgca tgcggtgtcc ttgcggccgt ggccgacgtg aacgccggca
     1261 ctgccctttc gttcaggccc gcgcctgccc gacccggcgc ttggcaggac gcttcgtggt
     1321 agtcgcggcg tcgcagctca ctccggcctc gaggcccttg atgatcgggc agtcgggccg
     1381 tccgtcgccc tcgcaggcgt cggcgagatg gcgcagggca tcggccatgt cggtcagctg
     1441 gcgggcgcgc tggtcgaggt cggcgatgtg gcggagcgcg atgtccttga cctcccggct
     1501 gctgcggccc tggtcgctcc acaggcgaag gagctgccgg atctcgtcca tggagaagcc
     1561 gagatcgcgg gcgcgacgga tgaacccgag ccggtgcagg tctgccgcgc cgtagtcgcg
     1621 gtagccgctg tcgcgccgcg ccgacttcgg gatcaggccg atgctctcgt agtagcggat
     1681 cattttggcc gacacgcctg aggcgtttgc ggcctgtccg atgttcatga cgagttccct
     1741 cgcaaagagc gcttgacctt accatcatgg gaaggtgcat agcaatgccg ctggccgccg
     1801 cagggcggct tccgacccgg cgactggagg ccgaccatga tcacgaagca catgacccgt
     1861 cgcgcgtttc tggccgcaac ggcggccgtg ccggccctct cgtccgtgcg tgccgaggca
     1921 ttgccgacga tggtggttac caaggacccg atgtgcggct gctgcacggg gtgggccgag
     1981 catatccgcg aagccggctt cccggtcgag atcgtcgagg tcagcgatct cgctcgcacg
     2041 aaggcgcgcc tcggcgtgcc ccaggatctc ggcgcctgcc acacggccga ggtcgggcct
     2101 tatgtcgtcg agggccacgt gccggccgac gccgtgaagc ggctcctcgc cgagcggcca
     2161 caaggcacgg ggctcgcggt gcgcggcatg ccggtcggct cgccgggcat ggagatcgaa
     2221 ggatcgacgc cggacacctt cgatgtggtg ctcttcggtc cggccggccg ctccgtcttc
     2281 gagcgctacg agggcgcacg gcgcctctga gccgaggcca agttccaaac acgagttcag
     2341 gaggccgaga tggcccacac gagcctagac gcgcacgacc atcgccacga acacaaaaaa
     2401 ccgggcaacg gcgcgccctg ctgctcctcc ggtgcgcacg gtgactcgca ccaccatggg
     2461 catgccgaag ccgccaccga gcatcgggtg aaggatcctg tgtgcggcat gtgggtggat
     2521 ccgcacacgg cgaagcaccg ggccgagcac ggcggccacc cgtactactt ctgctcggcg
     2581 gggtgccggg cgaagttcct cgccgaccct gcgcgttacc tcgatccggc ggccgcggcc
     2641 gccaaggccg agcccgtgcc ggaaggcacg atctatacct gccccatgca cccggagatc
     2701 cggcaggtcg ggccgggctc gtgcccgatc tgcggcatgg cgctcgagcc ggacgtggtc
     2761 actgccgaca ctggccccaa ccacgagctc gtcgacatga cgcggcggtt ctggatcggg
     2821 cttgcgctcg ccctccccgt ggtggtgctc gagatgggcg cgcatctcgt cggcctcgac
     2881 cggctcgtac ccgcgcagac gtcgaattgg cttcagctcg ctctcg
//
LOCUS       DASQWN010000454         2301 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1071776, whole genome shotgun sequence.
ACCESSION   DASQWN010000454 DASQWN010000000
VERSION     DASQWN010000454.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2301)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2301)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2301
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1071776"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..783)
                     /locus_tag="VE686_08570"
     CDS             complement(<1..783)
                     /locus_tag="VE686_08570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009492649.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin carboxylase N-terminal domain-containing
                     protein"
                     /protein_id="HYY84536.1"
                     /translation="MLPSVLIANRGEIACRIIRTAQRLGMRTIAVYSEADAEAMFVEM
                     ADEAHLVGPAAPADSYLRIDRVIAAAKASGAACIHPGYGFLSERAEFAQACTEAGIVF
                     VGPPASAIKAMGLKDAAKALAAQAGVPVVPGYHGAKQEPEFLRQKAYEIGYPVLIKAV
                     AGGGGKGMKRVDKVADFEAALASAQREAQGAFGDPRVLVEKYVLSPRHVEIQVFADAH
                     GNVVHLFERDCSLQRRHQKVIEEAPAPGMPDEVRAVMGKAAVE"
     gene            complement(1006..1479)
                     /locus_tag="VE686_08575"
     CDS             complement(1006..1479)
                     /locus_tag="VE686_08575"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019402697.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003755 - peptidyl-prolyl cis-trans
                     isomerase activity [Evidence IEA];
                     GO_process: GO:0000413 - protein peptidyl-prolyl
                     isomerization [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HYY84537.1"
                     /translation="MASDPENTLVLETTKGRVVIALRPDLAPGHVERIKTLARKGFYD
                     GVAFHRVIEGFMAQTGCPHGTGTGGSDLPDLKAEFNSEPHVRGVCSMARAQSPNSANS
                     QFFICFDDARFLDKQYTAWGKVVEGMENVDKIKRGEPVRDPDRIVTMRVQADATA"
     gene            complement(1505..1969)
                     /locus_tag="VE686_08580"
     CDS             complement(1505..1969)
                     /locus_tag="VE686_08580"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY84538.1"
                     /translation="MLAGAMAAVLAAGAAQAAPWAFEQDDAYFRQPPLTLPEGINGVL
                     RASARPTPVGGIETIGQVFAAVHACWHPPSTGPSGQQITLRLAFKRSGEIIGTPRITY
                     YRAGGSEEDRNLFTRSVRQAFAACLPLPLSRPLGAAMAGRPFTFRFVDDRRT"
     gene            complement(1993..>2301)
                     /locus_tag="VE686_08585"
     CDS             complement(1993..>2301)
                     /locus_tag="VE686_08585"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015824630.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003755 - peptidyl-prolyl cis-trans
                     isomerase activity [Evidence IEA];
                     GO_process: GO:0000413 - protein peptidyl-prolyl
                     isomerization [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HYY84539.1"
                     /translation="GDPTGTGTGGSDLPNIPAEFTQEPFKRGSVGMARSQSPNSANSQ
                     FFICYEGCAQLTGQYTLLGEVVSGMEVVDKIKKGSSANNGQVSGPDKIVKMQLASDAK
                     "
BASE COUNT          324 a          761 c          849 g          367 t
ORIGIN      
        1 ctcgacggcc gccttgccca tgacggcgcg gacctcgtcg ggcattccgg gcgccggcgc
       61 ctcctcgatg accttctggt gccggcgctg gagcgagcag tcgcgctcga acagatgcac
      121 gacgtttccg tgcgcgtcgg cgaagacctg gatctccacg tgccggggcg acagcacgta
      181 cttctcgacg aggacgcggg gatcgccgaa ggcgccttgc gcctcgcgct gcgccgaggc
      241 gagcgccgcc tcgaagtcgg ccaccttgtc gacccgcttc atgcccttgc cgccgccgcc
      301 cgcgacggcc ttgatgagca ccggatagcc gatctcgtag gccttctgtc gcaggaactc
      361 gggctcctgc ttcgccccgt ggtatccggg cacgaccggc acgccggcct gggcggcgag
      421 cgccttggcg gcgtccttga ggcccattgc cttgatggct gacgcgggcg ggccgacgaa
      481 gacgatgccg gcttcggtgc aggcctgcgc gaactcggcc ctttccgaga gaaagccgta
      541 tccggggtga atgcaggccg cgcccgaagc cttggcggcc gcgatgacgc ggtcgatgcg
      601 caggtagcta tcggcgggcg cggccggccc gacgaggtgc gcttcgtccg ccatctcgac
      661 gaacatcgcc tcggcgtccg cctcggagta gacggcgatg gtgcgcatgc cgaggcgctg
      721 cgccgtgcgg atgatgcggc aggcgatctc gccgcggttg gcgatgagga ctgagggcag
      781 catgcgcgac cttgcgttca cgagggccgc gaaggggtag gccgccaaga agcctttgtc
      841 atccctcccc ggaggggagg gcggagacgg gcgcgtcagc gcccgcccgg gtggagcgaa
      901 caccgccgtg ctgctctagc aactccgggc ttccgcccca ccccgctcgc gcctgcaggc
      961 gcgagtcgcc ctgccctcgc ggggagggat gtcggtgacg acagcttagg ccgtcgcgtc
     1021 ggcctggacg cgcatggtga cgatgcggtc ggggtcgcga acgggctcgc cgcgcttgat
     1081 cttgtcgacg ttttccatgc cttccacgac cttgccccag gcggtgtact gcttgtcgag
     1141 gaagcgggcg tcgtcgaagc agatgaagaa ctgcgaattc gccgagttcg gcgactgcgc
     1201 gcgcgccatg gagcagacgc cgcggacatg cggctcggaa ttgaactcgg ccttgaggtc
     1261 cggcaggtcg gagccgcccg tgccggtgcc gtgcgggcag ccagtctggg ccatgaagcc
     1321 ctcgatgacg cggtggaagg cgacgccgtc gtagaagccc ttgcgggcaa gcgtcttgat
     1381 gcgctccacg tggccgggcg cgaggtcggg gcgcagcgcg atcacgacgc ggcccttggt
     1441 ggtttcgagg acgagggtgt tctcggggtc ggaagccatt tggttctcct tgtggatctt
     1501 caaatcaggt gcgtcggtcg tcgacgaagc ggaacgtgaa cggccgtccc gccatggcgg
     1561 ccccgagagg ccgcgacagc gggaggggca ggcaggccgc gaaggcctgc cgcacggagc
     1621 gcgtgaagag gttccggtcc tcctcggagc cgccggcccg gtagtaggtg atgcgcgggg
     1681 ttccgatgat ctcgccagag cgcttgaagg cgagcctgag cgtgatctgc tggccgctgg
     1741 gtccggtcga aggcggatgc cagcacgcgt gcacggcggc gaacacctgg ccgatggtct
     1801 cgatgccgcc gacgggcgtc ggcctcgcgc tcgcccgaag cacgccgttg ataccctcgg
     1861 gcagcgtcag cggcggctga cggaagtagg cgtcgtcctg ctcgaacgcc cacggggcgg
     1921 cctgcgcagc gccggccgcg agcacggcag ccatggcgcc ggcgagcatg ccggcgcgat
     1981 gccgcccttc cctcacttgg cgtcgctcgc gagctgcatc ttgacgatct tgtcgggccc
     2041 cgagacctgg ccgttgttgg ccgacgagcc cttcttgatc ttgtcgacca cctccatgcc
     2101 ggacacgacc tcgccaagga gggtgtactg gccggtgagc tgggcgcagc cctcgtagca
     2161 gatgaagaac tgcgagtttg cggagttcgg cgactgcgag cgcgccatgc cgacggagcc
     2221 gcgcttgaag ggctcctgcg tgaactcggc cgggatgttg ggcaggtccg agccgcccgt
     2281 gccggtgccg gtcgggtcgc c
//
LOCUS       DASQWN010000455         3107 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_675022, whole genome shotgun sequence.
ACCESSION   DASQWN010000455 DASQWN010000000
VERSION     DASQWN010000455.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 3107)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3107)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3107
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_675022"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1555
                     /locus_tag="VE686_08590"
     CDS             <1..1555
                     /locus_tag="VE686_08590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018262198.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004812 - aminoacyl-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006418 - tRNA aminoacylation for protein
                     translation [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="class I tRNA ligase family protein"
                     /protein_id="HYY84540.1"
                     /translation="GLGNTPVVCPPDQDPASFVITDTAYDGEGRMINSRFLDGLTIAQ
                     AKEEVARRLERETSNGRPAAERKVNFRLRDWGISRQRYWGCPIPIIHCDACGVVPVPK
                     DQLPVELPEDVSFDVPGNPLDRHPTWKHVNCPQCGKAARRETDTMDTFVDSSWYFARF
                     TSPWRTDEPTDVPAVNAWLPVDQYIGGIEHAILHLLYSRFFTRAMNVTGHSDVRDGEP
                     FAGLFTQGMVVHETYRSADGSWVQPVDVRIESDGGTRRALNVHTSEPVEIGSIEKMSK
                     SKRNTVDPDDIIRSYGADTARWFMLSDSPPERDVIWTEEGVQGAYRFVQRVWRLTQEL
                     AGRAAETNGAAAGAGPDASEIRKAAHRALARVDEDVERLRFNRCVAHVYELANALQAA
                     LAEARGPVSAEVAAAFAEAAGIFIQLLAPMMPHLAEECWQALGREGLVAAAPWPTVDR
                     ALLVEDAITLPVQVNGKKRADVTVARDADQAAIEAAVMSLDAIRRAMEGRPVRKIIIV
                     PQRIVNVVA"
     gene            1542..2081
                     /gene="lptE"
                     /locus_tag="VE686_08595"
     CDS             1542..2081
                     /gene="lptE"
                     /locus_tag="VE686_08595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009490651.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0019867 - outer membrane [Evidence IEA];
                     GO_process: GO:0043165 - Gram-negative-bacterium-type cell
                     outer membrane assembly [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LPS assembly lipoprotein LptE"
                     /protein_id="HYY84541.1"
                     /translation="MSSPDRARRRTLGLVAAAGVALALGGCLRPLYGPTASGERMQDL
                     LASIEVAEPTTAVLQERLGHYVRSELIFLLDGSGQPKAKRYRLTLNLTEGVQSPIVDT
                     VTGRTESATVIGRATYTLYAPDGRIVTTGTATGSATFDRTPQRFAAVRAAREADIRLA
                     TLLAEQIKTRIAAVLLSAS"
     gene            2095..>3107
                     /gene="holA"
                     /locus_tag="VE686_08600"
     CDS             2095..>3107
                     /gene="holA"
                     /locus_tag="VE686_08600"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009490652.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009360 - DNA polymerase III complex
                     [Evidence IEA];
                     GO_function: GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit delta"
                     /protein_id="HYY84542.1"
                     /translation="MVAVKTGDVAGTLRRIPPGIAVVLVYGPDAGLVGERARAAAEAT
                     VSDPNDPFQLVRIEGDAVAADPGRLADEAGTIGLFGGRRAIWVKPTSRNIAPAIEAVL
                     AGAGEDAMVVVEAGDLARNAPVRTLCERSPKALALPCYADNARDLAAVVDEALREASL
                     RIAPDARATLIASLGGDRLASRGEIAKLVLYAHGQGAISLEDVDAVVSDVSALAMDAV
                     VDAAFAGDLAQLEAGYRRLTREGMAPAAVLAGALRHALALLAQRIDIEDTGRSITSAV
                     EGWRGLHFRRRSAIERQLRAWTGETLRRRIGTLQAELLDSRRVAALGDAIAARALVEV
                     GREA"
BASE COUNT          454 a         1170 c         1060 g          423 t
ORIGIN      
        1 cggcctcggc aacacgccgg tagtgtgccc gccggatcag gaccccgcct ccttcgtgat
       61 caccgacacc gcctatgacg gcgagggccg gatgatcaat tcgcgcttcc tcgacggcct
      121 caccatcgcg caggcgaagg aagaggttgc ccggcggctc gagagagaga ccagcaacgg
      181 ccgcccggcc gccgagcgca aggtgaactt ccgtctgcgc gactggggca tctcgcggca
      241 gcgctactgg ggctgcccga tcccgatcat ccactgcgac gcctgcggcg tggtgccggt
      301 cccgaaggac cagctgccgg tcgaattgcc cgaggacgtg tccttcgacg tccccggcaa
      361 tccgctcgac cggcacccga cctggaagca cgtcaactgc ccgcagtgcg gcaaggccgc
      421 ccggcgcgaa accgacacta tggacacctt cgtcgactcg tcctggtact tcgcgcgctt
      481 caccagcccc tggcgcacgg acgagccgac cgacgtcccc gccgtcaacg cttggctgcc
      541 ggtcgaccag tacatcggcg gcatcgagca cgcgatcctg cacctcctgt actcgcgctt
      601 cttcacccgc gccatgaacg tgacggggca ctcggacgtg cgcgacggcg agccgttcgc
      661 cggcctcttc acccaaggca tggtggtgca cgagacctat cgctccgccg atggctcctg
      721 ggtccagccg gtcgacgtgc gcatcgagag cgacggcggc acccgccgcg cgctcaatgt
      781 gcacacgtcc gagccggtcg agatcggctc gatcgagaag atgtcgaagt cgaagcggaa
      841 caccgtcgat cccgacgaca tcatcaggag ctacggcgcc gatacggcgc gctggttcat
      901 gctgtcggac tcgccgccgg agcgcgacgt catctggacc gaggaaggcg tccagggcgc
      961 ctaccgcttc gtccagcgcg tctggcgcct gacgcaggag ctcgccggcc gcgctgccga
     1021 gaccaacggc gcggctgccg gcgcaggtcc ggacgcctcg gagatccgca aagcggcgca
     1081 ccgggccctg gcccgtgtcg acgaggacgt cgagcgtctg cgcttcaacc gctgcgtcgc
     1141 ccacgtctac gagctcgcca acgctctgca ggccgcgctg gcggaagccc gcggccccgt
     1201 gtcggccgag gtcgccgcgg ctttcgcgga ggcggcgggc atcttcatcc agcttctcgc
     1261 gcccatgatg ccgcacctcg ccgaagagtg ctggcaggcg ctcggccgcg aaggcctcgt
     1321 cgcggcagcg ccatggccga ccgtcgaccg cgcgctgctg gtcgaggacg cgatcacgct
     1381 ccccgtgcag gtgaacggca agaagcgcgc cgacgtcacc gtcgcgcgcg acgccgacca
     1441 ggcggcgatc gaggccgccg tcatgtccct cgacgccatc cggcgcgcca tggaagggcg
     1501 cccggtgcgc aagatcatca tcgttccgca gaggatcgtg aatgtcgtcg cctgaccgcg
     1561 cccgccggcg caccctcggc cttgttgcgg cggccggcgt tgccctcgcc ctcggcggct
     1621 gcctgcgccc gctctacggt cccaccgctt caggcgagcg catgcaggac ctcttggcgt
     1681 cgatcgaggt cgccgagccc accactgccg tcctgcagga gcggctgggg cactatgtgc
     1741 gcagcgagct gatcttcctg cttgacggat ccgggcagcc caaagccaag cgctaccgcc
     1801 tcaccctcaa cctcacggaa ggggtgcagt cgccgatcgt ggacaccgtc acgggccgga
     1861 ccgagtccgc caccgtgatc ggccgcgcca cctacacgct ctatgcgccg gacgggcgca
     1921 tcgtcacgac gggcacggcc acgggctcgg ctaccttcga ccgcacgccc cagcgcttcg
     1981 ccgccgtgcg cgcggcccgc gaggccgaca tccgcctcgc cacgctccta gccgagcaga
     2041 tcaagacccg catagcggca gtcctgctca gcgcctcctg aggcagcgcc ggccgtggtc
     2101 gccgtcaaga ccggggacgt ggccggcacg ctccgccgca tcccgcccgg catcgcggtg
     2161 gttctcgtct atggcccgga cgccgggctg gtcggcgagc gggcgcgggc ggccgccgag
     2221 gcgaccgtca gcgatccgaa cgaccctttt cagctcgtcc gcatcgaggg cgacgcggtc
     2281 gccgccgatc caggccggct cgccgatgag gccggcacga tagggctctt cggcggacgc
     2341 cgcgccatct gggtcaagcc gacgagccgc aacatcgcgc cggcgatcga ggcggtgctg
     2401 gcgggcgccg gcgaggacgc catggtggtg gtcgaggccg gcgacctcgc ccgcaacgcg
     2461 cccgtgcgca cactctgcga acgctcaccg aaggccctgg cgctgccgtg ctacgccgac
     2521 aacgcgcgcg atctcgcggc cgtggtcgac gaggcgctga gagaggcctc cctcaggatc
     2581 gcccccgacg cccgcgccac cctgatcgcg agcctcggcg gcgaccgcct ggcgagccgc
     2641 ggcgagattg ccaagctcgt gctctatgcg cacgggcagg gagcgatcag cctcgaggac
     2701 gtcgatgcgg tggtgagcga cgtgtcggcg ctcgccatgg acgccgtcgt ggacgccgcc
     2761 ttcgccggcg acctggctca gctggaggcg ggctaccgcc ggctgacgcg cgaaggcatg
     2821 gcgcccgcgg cggttctcgc cggcgcgctc cggcacgccc tggcgcttct cgcgcagcgc
     2881 atcgacatcg aagatacggg gcgcagcatc acctccgccg tggaaggctg gcgcgggctg
     2941 catttccggc gccgcagcgc catcgagcgc cagctccgcg cctggaccgg cgagaccctg
     3001 cgccggcgga tcgggaccct gcaggccgag cttctcgaca gccgccgcgt cgccgcattg
     3061 ggcgacgcca ttgcggcccg ggcgctcgtc gaggtcggcc gggaagc
//
LOCUS       DASQWN010000456         2049 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_675055, whole genome shotgun sequence.
ACCESSION   DASQWN010000456 DASQWN010000000
VERSION     DASQWN010000456.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2049)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2049)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2049
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_675055"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(71..1240)
                     /locus_tag="VE686_08605"
     CDS             complement(71..1240)
                     /locus_tag="VE686_08605"
                     /inference="COORDINATES: protein motif:HMM:NF033547.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IS1595 family transposase"
                     /protein_id="HYY84543.1"
                     /translation="MARNAVQFQKGLSEATFDELYGTEAKCRAAVIAWRWPDGFECPA
                     CGGTTHSEVKTRRLFQCSACRRQTSPIAGTIFAATKAPLRIWFRAMHHLTRSKQGISS
                     IELGRRLGVTQTTAWTIKHKLAQVMMERDADKRLKGRVELDDAYLGGERAGGKRGRGA
                     PGKTPFVAAVETTPERKPRRLKLIVVKGFRKKEVEKLAQVMLERDAGKRLTGRVELDD
                     AYLGGERSGGTRGRGAPGKTPFVAAVETTEEGKPVRLKLRRVGSFCSRAVARFARRSL
                     GPGCEVVSDGLACFAAVADAGCRHEVMKTGSGAAAARKPAFKWVNTALGNIKAAITGT
                     YRAIHEKHVPRYLAEFEYRFNRRYDLAAMLPRLTWAAVRTPPMPYRMLKLAEVSA"
     gene            complement(1311..2049)
                     /locus_tag="VE686_08610"
                     /pseudo
     CDS             complement(1311..2049)
                     /locus_tag="VE686_08610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076612055.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /pseudo
                     /codon_start=2
                     /transl_table=11
                     /product="IS256 family transposase"
BASE COUNT          277 a          701 c          729 g          342 t
ORIGIN      
        1 tcgaacgcgg cgccatgggt tctgatcaga gggacttgat attataccaa cccggttaaa
       61 gactgcctga ttacgcggaa acctcagcca gtttcagcat gcggtagggc atgggcgggg
      121 tccggacggc ggcccaggtc aggcgcggga gcatggcggc gaggtcgtag cgtcggttga
      181 agcggtattc gaactcggcg aggtagcgcg gcacgtgctt ctcgtggatc gcgcggtagg
      241 tccccgtgat ggcggccttg atgttgccga gcgcggtgtt gacccacttg aaggcgggct
      301 tgcgggccgc ggcggcgccc gagcccgtct tcatcacctc gtggcggcac ccggcatcgg
      361 cgaccgccgc gaagcaggcg aggccgtcgc tgaccacctc gcagccgggg ccgaggctgc
      421 gccgggcgaa gcgcgcgacg gcgcggctac agaagctgcc gacccggcgc agcttcaggc
      481 ggaccggctt gccttcctcc gtggtctcga ccgcggcgac gaagggcgtc ttgcccggtg
      541 cgccgcggcc gcgcgtgccg cccgagcgct cgccgccgag gtaggcgtcg tcgagttcga
      601 cgcggccggt caggcgcttg ccggcgtcgc gctccagcat gacctgggcg agcttctcca
      661 cctccttctt gcgaaagccc ttgaccacga tgagcttgag ccggcgcggc ttgcgctcgg
      721 gcgtggtctc gaccgcggcg acgaagggcg tcttgcccgg cgcgccgcgg ccccgcttgc
      781 cgccggcgcg ctcgccgccg aggtaggcat cgtcgagttc gacgcgtccc ttcagccgct
      841 tgtcggcatc gcgctccatc atcacctgcg ccagcttgtg cttgatggtc caggcggtgg
      901 tctgcgtcac gccgaggcgg cggccgagct cgatgctgga gatgccctgc ttgctccgcg
      961 tcaggtggtg catggcgcgg aaccagatcc tcaggggcgc cttggtggcg gcgaagatgg
     1021 tccccgcgat cggcgatgtc tgccggcggc aggcgctgca ctggaacagc ctgcgggtct
     1081 tgacctcgct atgggtggtt ccgccgcagg ccgggcactc gaagccgtcc ggccagcgcc
     1141 atgcgatcac cgccgcgcgg cacttcgcct cggtgccata gagttcgtcg aaggtggcct
     1201 cgctgaggcc cttctggaat tgcaccgcgt tccgcgccat cgcctcgtcc ccaccgccgc
     1261 gttcatggtt tgtgccagaa atcgggtggc tgaggaagcc gcgtaagcag gttcgggaat
     1321 atgccgacca cgtccgagcg gcgcttgatc tcgccgttga gccgctcgag cgggttggtg
     1381 ctggcgatct gcggccagtg ctcccgagga aaggcggtgt aggccagcac gtcctcgcgc
     1441 gcctcgtcca tcagctcggc gagcctgggc gcgcgctcgc gcagcgcgtc ggcgacgctg
     1501 ttccactggg cgcgggcctc ggccgcggtt tcctgggcga agatggtctt gagcatggcc
     1561 gtcacggccg ggcgctgctt ggccggcacc tgcgccaagg cactcctcat ccagtgcacc
     1621 cggcagcgct gcaggctggc atggaacacc ttggtggccg cggcccgcag gcccttgtgg
     1681 tcgtcggcga tcaccagctt gacgccgcgc aggccacggt cagcgaggga acggaggaac
     1741 cccttccaga agacctccgc ctcggaggcg cccgtggcga cgccgagcac ctcgcgccgg
     1801 ccatcagtgt tcacccccac cgcgattatc gttgctgtcg agacgatgcg acccgcctcg
     1861 cgggccttca cgtaggtggc gtcgatccag acatagggcc attcgccctc gagcgggcgg
     1921 gcgaggaagg cgttcacccg cccgtcgatc tccgcgacca agcggctgac ctcgctcttg
     1981 gagatgccgg acccgcccat cgccttgacc aggtcgtcca cggcccgggt ggagacgccg
     2041 tggatgtag
//
LOCUS       DASQWN010000457         2546 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1170584, whole genome shotgun sequence.
ACCESSION   DASQWN010000457 DASQWN010000000
VERSION     DASQWN010000457.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2546)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2546)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2546
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1170584"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..415
                     /locus_tag="VE686_08615"
     CDS             <1..415
                     /locus_tag="VE686_08615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012331748.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="glutamine amidotransferase"
                     /protein_id="HYY84544.1"
                     /translation="PLIPTADGHVMAEQVGVPWPAYVYHWHREGFGCPTGAATLATGD
                     DFPTQAIRVGPAAYGLQFHPEVTHAMMCRWTVRGHERLSLPGAQDRSRQIEGRFMHDP
                     HVVRWLHAFLDHWVAGGADTTASDTPVEPRRAAAS"
     gene            complement(442..>2546)
                     /locus_tag="VE686_08620"
     CDS             complement(442..>2546)
                     /locus_tag="VE686_08620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008138560.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF6537 domain-containing protein"
                     /protein_id="HYY84545.1"
                     /translation="QNLGDGTYFHSGHLAIRQAVAAGVNVTYKILYNDAVAMTGGQPI
                     DGVLTVPQVTRLVAAEGVKRIAVVSDDPSRYDGADGFAPGVTVHHRDDLDAVQRELRD
                     LPGVTILVYDQTCAAEKRRRRKRGTDPDPGKRVVINELVCEGCGDCQVKSNCLSVVPV
                     DTEFGRKRQIDQSSCNMDFSCVKGFCPSFVTVEGGALRRGAGADIAAEEVFARAAALA
                     PPLSRLRERSSACSGPGEGKDPADGPQPRASGESTSRARGRGEEPDEILIAGVGGTGV
                     VTVGALITMAAHLEGKGASVLDFTGFAQKGGQVLSFVRIADTAEALRQVRIDRGRATA
                     VLACDLVVAASREALGVLAPGRTRIVANSREIPTGAMLRDADARVDTRAIEVLLARRV
                     GEHAFASFDACTYAHHLVGDAQQANVLLLGYAWQQGLVPVSLVAIERAIELNGVAVEA
                     NRRAFAWGRLAAADPDFTAQHLGRAGRDRTAASLAEIVERRAAFLAAYQDLAYAARYR
                     ERVEAVAEAERRTFGEGGSEITAAVATSLFKLMAYKDEYEVARLYTDGHFVERIRREF
                     DGDVRLSFHLAPPLLSRIRPGETEPRKMTFGPWMLAVFRVLARMRRLRGTAFDLFGYT
                     AERRQERALIDEYETLIDAAVAAFGTAKRDDCLALLRLPLDIRGFGPVKDRAVRRYRQ
                     KREDLLARLIAPETRAAA"
BASE COUNT          377 a          902 c          901 g          366 t
ORIGIN      
        1 ccctctgatt ccgacggcgg acggccacgt catggcggag caagttgggg tgccctggcc
       61 agcatatgtc taccactggc accgcgaagg cttcggctgc cccaccggcg ccgcgacgct
      121 cgcaaccggc gacgacttcc cgacccaggc catccgcgtc gggccagcgg cctacgggct
      181 gcagttccac cccgaggtga cgcacgcgat gatgtgccgg tggaccgtgc gaggccacga
      241 gcgtctgagc ctgcccggcg cacaggaccg ctcgcgccag atcgaaggcc ggttcatgca
      301 cgacccgcac gtggtgcgct ggctgcacgc cttcctcgac cactgggtcg cgggcggggc
      361 cgacacgacg gcgagcgaca cgccggtcga gccacgccgc gccgccgcca gctagagcgc
      421 cgcctgctca aggtcggcgg atcacgccgc cgcgcgcgtc tcgggcgcga tgaggcgggc
      481 aagcaggtcc tcgcgctttt ggcgatagcg cctaacggcg cggtccttca cggggccgaa
      541 gccgcggatg tcgagcggaa gccgtagcag cgccaggcag tcgtcccgct tcgccgtccc
      601 gaacgccgcg acggcggcat cgatgagcgt ctcgtattcg tcgataagcg cccgctcctg
      661 ccggcgctcg gccgtatagc cgaacaggtc gaaggcggtg ccgcgcaggc gccgcatgcg
      721 cgcgagcact cggaagacgg cgagcatcca gggtccgaag gtcatcttgc gcggctcggt
      781 ctcgccgggt cggatccggg acaggagcgg tggcgcgaga tggaagctca ggcgcacgtc
      841 tccgtcgaac tcgcgccgga tgcgctcgac gaagtggccg tccgtgtaca gacgcgcgac
      901 ctcgtattcg tccttgtagg ccatgagctt gaacaggctc gttgcgaccg cggctgttat
      961 ctcgctcccg ccttcgccga aggtccgccg ctcggcttcc gccacggcct cgacgcgctc
     1021 acggtagcgg gccgcatacg ccaggtcctg gtaggcggcg aggaaggcgg cgcggcgttc
     1081 gacgatctcg gccagcgagg ccgcagtgcg atccctgccc gcccgtccaa gatgctgcgc
     1141 cgtgaagtcc gggtccgcag cggcgaggcg gccccaggcg aaagcgcgcc ggttcgcctc
     1201 gacggcgacg ccgttgagct cgatcgcgcg ctcaatggcg acgagcgaca cgggcacgag
     1261 cccctgctgc caggcatagc ccagcagcag cacgtttgcc tgctgggcat cgccgacgag
     1321 gtggtgcgcg taggtgcagg catcgaagct cgcaaacgca tgctccccca cgcgtcgggc
     1381 cagcaggacc tcgatggcgc gggtgtcgac gcgcgcatcc gcgtcgcgca gcatggctcc
     1441 ggtcgggatc tcgcggctgt tggccacgat gcgggtgcgg ccgggcgcca gcacgccgag
     1501 cgcctctcgg cttgccgcga cgacgaggtc gcaggcgaga accgcggtgg cgcggccgcg
     1561 atcgatccgg acctggcgca gggcctccgc cgtgtccgct atgcgcacga aggacagcac
     1621 ctggccgccc ttctgggcga agccggtgaa gtcgagcacg ctcgcgcctt tgccctcgag
     1681 gtgcgccgcc atggtgatga gcgcgccgac ggtgacaaca ccggtgcccc caacgccggc
     1741 gatgaggatc tcgtcgggct cctcccctct cccgcgtgcg cgcgaggtcg actctccgga
     1801 ggcgcgcggt tgagggccgt ccgcgggatc cttgccctca cccggtccgc tgcacgcact
     1861 cgacctctcc cgcaagcggg agaggggcgg cgccaaggcc gcggcgcgcg cgaacacttc
     1921 ctcggccgcg atgtcggctc ccgccccgcg gcgcagcgcg cctccttcga ccgtgacgaa
     1981 gctggggcag aagcccttca cgcatgagaa gtccatgttg cacgaggact gatcgatctg
     2041 acgcttgcgg ccgaactccg tgtcgacggg cacgaccgag aggcagttcg acttcacctg
     2101 gcagtcgccg cagccttcgc aaacgagctc gttgatgacg acccgcttgc ccggatcggg
     2161 atcggtgccg cgcttgcggc ggcggcgctt ctcggccgcg caggtctggt cgtagacgag
     2221 gatcgtgacg cccggcaggt cccgcagctc acgctggacc gcgtcgaggt cgtcgcgatg
     2281 gtgcacggtc acgccgggcg cgaagccatc ggcgccgtca taccgggacg ggtcatccga
     2341 cacgacggcg atgcgcttca cgccctcggc ggcgacgagc cgcgtgacct gcgggacggt
     2401 gagcacgccg tcgatgggct gcccacccgt catcgcgacg gcgtcattgt acaggatctt
     2461 ataggtgacg ttcacgcccg ccgcgacggc ctgccgaatc gcgagatggc cggagtggaa
     2521 gtaggtgcca tcgccgaggt tctgga
//
LOCUS       DASQWN010000458         2414 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_534751, whole genome shotgun sequence.
ACCESSION   DASQWN010000458 DASQWN010000000
VERSION     DASQWN010000458.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2414)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2414)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2414
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_534751"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(179..964)
                     /locus_tag="VE686_08625"
     CDS             complement(179..964)
                     /locus_tag="VE686_08625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009493305.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MOSC N-terminal beta barrel domain-containing
                     protein"
                     /protein_id="HYY84546.1"
                     /translation="MTIRIDALYRYPVKGLSPERLGRAELRRGAYFPGDRVFAIENGP
                     SGFDADAPVHQAKIKFLMLMRNEALARLRTRYEDATGTLVVEEGGREALRADLATAEG
                     RLALEAFMRRFVPQELRGPPKVLTAPEGFRFTDSRSGFVSIINRASVQALEEMVGAPV
                     DPLRFRGNLLVEGLDPWAEFDLVGQVLATPSGVRLKVTKRIERCAATNVDPTTGLRDL
                     QIPRSLMQAYGHFDCGIYAEVLAGGRIDRGDGLAPDQAVLALG"
     gene            complement(1013..1285)
                     /locus_tag="VE686_08630"
     CDS             complement(1013..1285)
                     /locus_tag="VE686_08630"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY84547.1"
                     /translation="MPLSSVLKWLSPRARREEKAQQANADLRANAEKALRMKQEAGPQ
                     ANIPPHQTANQGMQSANVNTDVSRQSQEGAFEPQLKRTKVARSGDT"
     gene            complement(1301..1633)
                     /locus_tag="VE686_08635"
     CDS             complement(1301..1633)
                     /locus_tag="VE686_08635"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY84548.1"
                     /translation="MAPSRADPRSEAEKARADLKRNTEMGSAVSESPLEHQPSVTPDT
                     FGVHGKTARLQSGIDQGVEAGGPRPSGGPAGGEESIAAAPQVTAGRDSTHRVSQHGDT
                     DPPTRPKT"
     gene            1886..>2414
                     /locus_tag="VE686_08640"
     CDS             1886..>2414
                     /locus_tag="VE686_08640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012454198.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Clp protease N-terminal domain-containing
                     protein"
                     /protein_id="HYY84549.1"
                     /translation="MNIEKYTQRAQGFLQAAQTIAMRDGHPQFTPEHVLKALLDDPEG
                     LAAGLIERTGGNAKAVLASVDAALAKQPKVSGSASQPQATRELVRLFDTAEKAADKAG
                     DSYVTVERLLLALAVEKDTEAGRALSRAGVTAQGLNAAIETLRKGRTADNATAENAYD
                     ALKKYARDLTEAARDG"
BASE COUNT          349 a          825 c          857 g          383 t
ORIGIN      
        1 ccgaagtggt gcgtccgcgc cgccgccgcc gcacccgcca ggagatcgag gccgccaacg
       61 ccgaggccaa tgcggatttc gtgccggccg ccgtgaagac ctccgcggcc gagtaaggca
      121 agacatttgc aggaatgaaa aagggagggc cttcgccctc cctttttcat gtccggcctc
      181 aacccagcgc cagcaccgcc tggtccggcg cgaggccgtc gccccggtcg atccggccgc
      241 cggccagcac ttcggcatag attccgcaat cgaaatgccc gtaggcctgc atgagactgc
      301 gcgggatctg caggtcgcgg aggcccgtcg tcgggtcgac gttggtggcg gcgcagcgct
      361 cgatgcgctt ggtcaccttc agccgcacgc ccgatggggt ggccagcacc tgccccacga
      421 ggtcgaactc ggcccaaggg tcgaggcctt cgacgagcag gttgccgcgg aagcgcaagg
      481 gatcgacggg cgccccgacc atctcctcga gcgcctggac gctggcccgg ttgatgatgg
      541 agacgaagcc gctgcgggaa tccgtgaagc ggaagccttc cggcgctgtc agcaccttcg
      601 gcgggccgcg caattcctgc ggcacgaagc ggcgcatgaa tgcttccagg gcgaggcgcc
      661 cctcggccgt cgcgagatcg gcccgcagcg cctcccggcc gccctcctcg accaccaaag
      721 tgccggtcgc gtcctcatac cgtgttctca ggcgcgccag ggcctcgttc cgcatgagca
      781 tgaggaactt gatcttcgcc tgatgcaccg gcgcgtccgc gtcgaacccg gaggggccgt
      841 tctcgatggc gaagacccgg tcgccgggga aatacgctcc gcgacgcagc tcggcgcggc
      901 ccaagcgctc gggcgagagc cctttgacgg gatagcggta cagcgcgtcg atgcggatcg
      961 tcatgccccg tcgtagcctc ccggccgcgc cgggggcaag ccgtccggcg ggtcaggtgt
     1021 cgccgctgcg ggccaccttg gtgcgcttga gctgcggctc gaaggcacct tcctgggatt
     1081 gccgcgacac gtccgtgttg acgttcgcgg actgcatgcc ctggttcgcc gtctggtgcg
     1141 gcgggatgtt cgcctgcggc cctgcttcct gcttcatgcg caaggccttt tcggcattgg
     1201 cgcgcaggtc cgcattcgcc tgttgggcct tctcctcgcg gcgtgcgcgc gggctgagcc
     1261 acttcagcac cgatgacagg ggcatgggtc ggcctttctt ctaggtcttg ggacgggtgg
     1321 gtggatcggt gtcgccgtgc tgggacacgc ggtgggtgct gtcgcggccc gccgttactt
     1381 gtggcgccgc ggcgatcgac tcttcgccgc cggccgggcc tccgctcggg cgtgggccgc
     1441 cggcctcgac gccctggtcg atgcccgact ggagccgcgc tgtctttccg tgcacgccga
     1501 aggtgtcggg cgtgacggac ggctggtgct caagtggcga ttccgagacg gcgctgccca
     1561 tctcggtgtt gcgcttcagg tccgcgcgcg ccttctcggc ttcggagcgc gggtcggcgc
     1621 ggctgggagc catgatgcaa tccttcgacc ggcgggacgt ggggtcaatg cgggcgccgg
     1681 gacgatcgtt cccgctgcgc agcgttcgca aataggccgt cagccgggcc ttgtgtcact
     1741 catttaccac accacatcag gggagccggc ggctcatgcg agcgccggcg tccgcggccg
     1801 cctgcgacag gtgctccgcg gggatcttcc gcggcttcgc cgagcctcat gcgagggcgg
     1861 cgggcgccga gagaggggtt gggacatgaa catcgaaaaa tacacgcagc gcgcccaagg
     1921 cttcctgcag gcggcgcaga cgatcgcgat gcgcgacggg cacccgcagt ttacgcccga
     1981 gcatgtgctg aaggcgctgc tcgacgatcc ggagggcctc gcggcggggc tgatcgagcg
     2041 cacgggcggc aacgccaagg ccgtgctcgc ctccgtcgac gccgcgctcg ccaagcagcc
     2101 taaggtttcg gggtcggcgt cgcagccgca ggcgacacgc gagctcgtgc gcctgttcga
     2161 caccgccgag aaggccgccg acaaggccgg cgactcgtac gtcaccgtcg agcggctgct
     2221 cctcgcgctt gcggtcgaga aggacaccga ggctggacgc gcgctttctc gggcgggcgt
     2281 gacggctcag ggcctgaacg ctgcgattga gacgctccga aaaggccgca ccgccgacaa
     2341 cgcgacggcc gagaacgcct atgacgcgct gaaaaaatac gcccgtgacc tcacggaggc
     2401 ggcgcgcgac ggca
//
LOCUS       DASQWN010000459         3603 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_81611, whole genome shotgun sequence.
ACCESSION   DASQWN010000459 DASQWN010000000
VERSION     DASQWN010000459.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 3603)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3603)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3603
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_81611"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..507
                     /locus_tag="VE686_08645"
     CDS             <1..507
                     /locus_tag="VE686_08645"
                     /inference="COORDINATES: protein motif:HMM:NF016292.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate binding protein"
                     /protein_id="HYY84550.1"
                     /translation="IRELLPSARRLAVLANGADPFTPPYLVAIGDSARSVGFDVEPVM
                     VRPAEPFEAAFEAMVAKGAQALVVQGSLVRVDAAELALKHRLPSISSPSIWPRSGGLL
                     SYSPDSRAMVREAVGYVDRILKGAKPADLPVSFPTTFELILNMKTANALGLAIPPSIL
                     SRADEVIA"
     gene            complement(527..1771)
                     /locus_tag="VE686_08650"
     CDS             complement(527..1771)
                     /locus_tag="VE686_08650"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HYY84551.1"
                     /translation="MHTEQQQRSFWVPVICGGVILTIGIGSRQSFGIFQTPIAADLNV
                     GRELWSFGNAVSMLLLGLCSPFVGNLADRFGSARTVAGGGLIYVAGMLIMATATEGVQ
                     LTLGNALTGIGMAAAGFGPIFGVITRQTPVVKRSIALGVATAAGSFGQFAVVPLASAL
                     QARFGDWHTTMLILALMSLAVLPLTLGLREGRRAAGSARPQSSREALEEAFGNGSFWL
                     LTVGFFVCGFHVAFVGLHLPAYISDQAIGMTAFGRTITPLELGGWAIGLVGLFNIAGS
                     LLWAWLGGRHKRKDMLALLYLLRSLVFIAFLALPLSALSVLAFAAALGFLWLGTVPLT
                     SGLVGYLFGPVYMSTLYGIVFFSHQLGSFLGGWGAGRLYDVRGNYDAMWWLSIGLGLF
                     AAAIHWPIRERPVERLRVQPAV"
     gene            complement(1848..2612)
                     /locus_tag="VE686_08655"
     CDS             complement(1848..2612)
                     /locus_tag="VE686_08655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011969919.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HYY84552.1"
                     /translation="MTLPTTPSFHLDGRRALVTGAGRGIGLAAAAALAQAGAHVTLVA
                     RSEGEIEAAAQAIRASGGSADAQACDVNDLDAFAKLVANAEPYDIFFNNAGMNRPQPF
                     AEVSVESYDAIMTLNVRSAFFAAQAVVRRLMATQRPGSIINTSSQMGHVGAAGRAVYN
                     ASKFAVEGFSKAMAVELGPHRIRVNTICPTFIETPMTRPFLQDEAFMRGVLSKIKLGR
                     LGQVEDLMGAVVFLASDASALMTGSALMVDGGWTAE"
     gene            complement(2618..>3603)
                     /gene="hisD"
                     /locus_tag="VE686_08660"
     CDS             complement(2618..>3603)
                     /gene="hisD"
                     /locus_tag="VE686_08660"
                     /EC_number="1.1.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014328258.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004399 - histidinol dehydrogenase
                     activity [Evidence IEA];
                     GO_process: GO:0000105 - histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="histidinol dehydrogenase"
                     /protein_id="HYY84553.1"
                     /translation="GHKNIPVASVGCYVPGGKYPMVASAHMSVVTAKVAGVPRIVTAA
                     PPYQGRPAAAIVAAQHLAGADTIYCLGGIQAVGAMALGTQTIEAVDMLVGPGNAYVAE
                     AKRQLYGRVGIDLFAGPTETLVIADDTVDGEICATDLLGQAEHGPTSPAVLLTNSEKL
                     ARDTMAEVERLLGILPTAAVARKAWEDNGEVIVCESEEEMVREADRIASEHVQVMTRD
                     PEYFLARMTNYGALFLGPRTNVAYGDKVIGTNHTLPTGKAARYTGGLWVGKFLKTVTY
                     QRVMTDEASARIGEVCSRLCMLEGFAGHAEQANVRVRRYGGRNVPYASAAE"
BASE COUNT          565 a         1227 c         1302 g          509 t
ORIGIN      
        1 atccgcgagc tgctcccctc ggcccggcgt ctcgccgtgc tcgcaaacgg cgccgacccc
       61 ttcaccccgc cgtacctcgt cgccatcggc gacagcgcgc gcagcgtcgg cttcgacgtg
      121 gagccggtca tggtccgccc ggcggagccg ttcgaggcag cattcgaagc catggtcgcc
      181 aagggcgcgc aggccctcgt cgtccagggg agcctcgtgc gcgtcgatgc ggcggagctc
      241 gcgctgaaac accggctgcc ctcgatctcg agcccttcca tatggccgcg ctccggtggc
      301 ttgctctcct actcgccgga ttctcgcgcc atggtccgcg aggccgtcgg gtacgtcgac
      361 aggatcctca aaggcgcaaa gccggccgac ctgccggtga gcttcccgac aacgttcgag
      421 ctcatcctca atatgaagac ggcgaacgcc ctcggcctcg cgatcccgcc cagcatcctg
      481 tcgcgcgccg acgaggtgat cgcctgagcg cggacgaccc gggggcctac acggccggct
      541 ggactcgaag gcgctcgacg gggcgctcgc ggatgggcca gtggatggcg gcggcgaaca
      601 ggccgaggcc gatcgacagc caccacatgg cgtcgtagtt gccgcgcaca tcgtagagcc
      661 gcccggcgcc ccagccgccg aggaagctgc cgagctggtg gctgaagaac acgatgccgt
      721 agagcgtcga catatagacc gggccgaaga ggtagccgac gaggccgctc gtcaggggga
      781 ccgtcccgag ccacaggaac ccgagcgccg ccgcgaaggc cagcacgctc agggccgaca
      841 ggggcagggc gaggaacgct atgaagacga gcgagcgcag gaggtagagc agcgccagca
      901 tgtccttgcg cttgtggcgg ccgccgagcc aggcccacag gagcgagccg gcgatgttga
      961 acaggccgac gaggccgatg gcccagccgc cgagttcgag aggcgtgatg gtgcggccga
     1021 aggcggtcat gccgatcgcc tgatcggaga tgtaggccgg caggtgcagg ccgacgaaag
     1081 cgacgtggaa gccgcagacg aagaacccga ccgtcaggag ccagaagctg ccattgccga
     1141 aggcctcctc gagggcctcc ctgctgctct gcgggcgcgc cgagccggcg gcgcggcgac
     1201 cctcgcgcag gccgagggtc agcgggagca cggccagcga catcagggcg aggatcagca
     1261 tggtcgtgtg ccagtcgccg aagcgggcct ggagcgcgga cgccagaggc acgacggcga
     1321 actggccgaa ggagccggcc gcggtggcga cgccgagcgc gatcgagcgc ttcaccaccg
     1381 gggtctggcg cgtgatgacg ccgaagatcg ggccgaagcc cgccgccgcc atgccgatgc
     1441 cggtgagcgc attgccgagc gtcagctgaa ccccctccgt cgcggtcgcc atgatcagca
     1501 tgccggcgac gtagatgagg ccgccgccgg cgaccgtgcg ggcgctgccg aagcggtcgg
     1561 cgaggttgcc gacgaagggc gagcagagcc caagcagcag catcgagacg gcattgccga
     1621 acgaccacag ctcacggccg acgttgaggt cggcggcgat gggcgtctgg aagatgccga
     1681 agctctggcg cgagcctatg ccgatggtca ggatcacgcc gccgcagatc accggcaccc
     1741 agaaactgcg ctgctgttgc tcggtgtgca tgtcgtttcc cgccccgtgt agttgcacat
     1801 tgagccttgc cgcgcaaaag gcaacgcaca tcgctgtgag ggcgcggcta ctccgcggtc
     1861 cagccgccgt cgaccatgag ggcggagccg gtcatcaggg cggatgcgtc ggaggcgagg
     1921 aagacgacgg cgcccatgag gtcctcgacc tgcccgagcc gcccgagctt gatcttcgac
     1981 aggacgccgc gcatgaacgc ctcgtcctgc aggaacggcc gcgtcatcgg cgtctcgatg
     2041 aaggtcgggc agatggtgtt gacccggatg cggtgcggcc cgagctccac cgccatcgcc
     2101 ttggagaagc cctcgacggc gaacttcgag gcgttgtaga cggcccgccc tgcggcgccg
     2161 acgtggccca tctgcgacga ggtgttgatg atcgagccgg gccgctgcgt ggccatgagc
     2221 cggcgcacca ccgcctgcgc ggcgaagaag gccgagcgca cgtttagcgt catgatggcg
     2281 tcgtagctct cgacgctcac ctccgcgaac ggctgcggcc ggttcatgcc ggcgttgttg
     2341 aagaagatgt cgtagggctc ggcattggcg acgagcttgg cgaaggcgtc gaggtcgttc
     2401 acgtcgcagg cctgcgcgtc ggccgagccg ccgctcgccc ggatcgcctg cgccgccgcc
     2461 tcgatctccc cctcagagcg cgcgacgaga gtgacgtggg cgccggcctg cgccagcgcc
     2521 gccgccgccg cgagtccgat cccgcgcccg gccccggtca cgagcgcgcg cctgccgtcg
     2581 aggtggaacg agggggtggt ggggagggtc atgaccgtta ctccgccgcg ctcgcgtagg
     2641 gcacgttccg tccgccgtac cggcgcaccc gcacgttcgc ctgctcggcg tggccggcaa
     2701 agccctcgag catgcacagg cgcgagcaga cctcgccgat ccgcgccgag gcctcgtcgg
     2761 tcatgacgcg ctggtaggtc acggtcttga ggaacttgcc gacccagagc ccgcccgtgt
     2821 agcgggcggc cttgccggtc ggcagggtgt ggttggtgcc gatgaccttg tcgccatagg
     2881 cgacgttggt gcgcggcccg aggaacagcg cgccgtagtt ggtcatcctt gccaggaagt
     2941 actccggatc gcgggtcatc acctgcacgt gctcggaggc aatgcgatcg gcttcgcgca
     3001 ccatctcctc ctcgctctcg cacacgatga cctcgccgtt gtcctcccat gccttccggg
     3061 cgacggcggc cgtcggcagg atgccgagca ggcgctccac ctccgccatg gtgtcgcgcg
     3121 cgagcttctc ggagttggtg aggaggacgg ccggcgacgt cgggccgtgc tcggcttggc
     3181 cgaggaggtc ggtggcgcag atctcgccgt cgacggtgtc gtctgcgatg acgagggtct
     3241 cggtcgggcc ggcgaagagg tcgatgccga cgcggccgta gagctggcgc ttggcttccg
     3301 ccacgtaggc gttgccgggg ccgacgagca tgtcgacggc ctcgatcgtc tgcgtgccga
     3361 gcgccatggc gccgaccgcc tggatgccgc cgaggcagta gatcgtgtcg gcaccggcca
     3421 gatgctgcgc cgcgacgatc gccgccgccg ggcggccctg gtagggcggc gccgcggtga
     3481 cgatgcgcgg cacgcccgcg accttggcgg taacgaccga catgtgcgcc gaggcgacca
     3541 tcggatattt cccgcccggc acgtagcagc cgacgctcgc gaccgggatg ttcttgtgcc
     3601 cga
//
LOCUS       DASQWN010000460         3141 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_534896, whole genome shotgun sequence.
ACCESSION   DASQWN010000460 DASQWN010000000
VERSION     DASQWN010000460.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 3141)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3141)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3141
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_534896"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..296)
                     /locus_tag="VE686_08665"
     CDS             complement(<1..296)
                     /locus_tag="VE686_08665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015668095.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY84554.1"
                     /translation="MSAPRRILHDIAHARAGDKGDTSSINVWAYDPADYPALQAALTP
                     ERVKAAFPDLIQGEVVRHDLPHLHGLNLILRNALEGGVNSSLNLDSHGKSWSYL"
     gene            complement(293..1636)
                     /locus_tag="VE686_08670"
     CDS             complement(293..1636)
                     /locus_tag="VE686_08670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012320976.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyclic terpene utilization AtuA family protein"
                     /protein_id="HYY84555.1"
                     /translation="MGEVFRIGTGAGFSADRLGPAVELARKGRLDAMIIECIGERTMA
                     FGHRDRMANPSRGYNAQLEARMRALLPPCREAGTVIVTNMGVANPAAAAERTVAIARE
                     LGLKGLKVACIEGDEVSDAVSSDAPLMDEPGTIGDVGRPVVGMNAYVGIEAILPALEA
                     GADVVMGGRLADPSLTLAPLVHRFGWAYDDWERLGAGTLVGHLLECGMQVTGGYFADP
                     GVKDVPDLARCGFPIAEVAEDGSAVITKLADAGGCVTPQTVKEQLLYEVHDPAAYLTP
                     DVTADFSRVAVEEVGPNRVRLSGAGGRPRPERLKVTAGFDGGFLGEAGVSYAGPNAGA
                     RARLAAQVVEERLREAHGIQGPVRIDLIGVNSLFKTAVPEADGDGAEDVRLHVALRSR
                     RREDAELMLWEVESLLCCGPAGGGGFRGAIVPSVVTRSVLIEREKVRPRMTMLVA"
     gene            complement(1764..2744)
                     /locus_tag="VE686_08675"
     CDS             complement(1764..2744)
                     /locus_tag="VE686_08675"
                     /inference="COORDINATES: protein motif:HMM:NF024772.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HYY84556.1"
                     /translation="MAGCLIATAPARAEVSEVTIAQQYGVAFLPLMVMEREGILEKRA
                     KAAGLPDVKVNWAKVAGPSVMNDGLLSGTMHFVAQGAPSLITLWDKTRGSVGIKGVAA
                     MTTYPLYLVTRNPEVKSIKDFTSKDKIAVPSAKISTQAIMLQMAAAATWGEAEYARLD
                     PLTVSLSHPDAMVALINQSGGVNAHFATSPFYEQEIKTIPGARLITTNYEILGGPASA
                     IVLTTSSKFREANPKVYKAFFEALSESIDTVNKDKRAAAKLYLELAKDTKNTVEDILA
                     IIEDKDYRYTLKPEKVFKTAQFMAKIGSIKQAPKSLEEMFFPEAANLGGD"
BASE COUNT          447 a         1039 c         1139 g          516 t
ORIGIN      
        1 atcagatagc tccaggattt gccgtggctg tcgaggttga gggaggagtt gacgccgcct
       61 tcgagggcgt tgcggaggat gaggttgagg ccgtggaggt gggggaggtc gtggcggacg
      121 acctcgcctt ggatgaggtc cgggaacgcc gccttgacgc gctcgggcgt gagggccgcc
      181 tggagggcgg ggtagtcggc cgggtcgtag gcccatacgt tgatgctcga ggtgtcgccc
      241 ttgtcgcccg cccgggcgtg ggcgatgtcg tgcaggatgc ggcgcggcgc gctcatgcga
      301 cgagcatcgt catgcgcgga cggaccttct cgcgctcgat cagcaccgag cgggtgacga
      361 cgctcggcac gatggcgccg cggaagccgc cgccgccggc ggggccgcag cacaggagcg
      421 actcgacttc ccagagcatg agctcggcgt cctcgcgccg gcgcgaacgc agggcgacgt
      481 gcaggcgcac gtcctcggcc ccgtcgccgt ccgcctcggg cacggcggtc ttgaacaggg
      541 agttcacgcc gatgaggtcg atgcggacgg gaccctggat gccgtgggcc tcgcgcaggc
      601 gctcctcgac cacctgtgcg gcgaggcgcg cacgggcgcc ggcgttgggg ccggcgtagc
      661 tgaccccggc ctcgccgagg aagccgccat cgaacccggc cgtgaccttc aggcgctcgg
      721 gccgcggccg cccgccggcg cccgagagtc gcacccggtt cggcccgacc tcctcgacgg
      781 cgacccgcga gaaatcggcc gtcacgtccg gcgtcaggta cgcggccggg tcgtgcactt
      841 cgtagaggag ctgctccttg acggtctgcg gcgtgacgca gccgcccgca tcggcgagct
      901 tggtgatcac ggcgctgccg tcctctgcca cctcggcgat ggggaagccg cagcgggcga
      961 ggtcgggcac gtccttgacg ccggggtcgg cgaaataacc ccccgtgacc tgcatgccgc
     1021 actcgagaag gtggccgacg agggtcccgg cgccgagccg ctcccagtcg tcgtaggccc
     1081 agccgaagcg gtggacgagg ggcgcaaggg tcagggaggg gtcggcgagg cgcccgccca
     1141 tgaccacgtc cgccccggcc tcgagggcgg gcaggatcgc ctcgatgccg acgtaggcgt
     1201 tcatgccgac gacgggccgg ccgacgtcgc cgatggtgcc gggctcgtcc atgaggggcg
     1261 cgtcggacga gacggcgtcc gagacctcgt caccctcgat gcaggcgacc ttgagcccct
     1321 tcaggccgag ctcgcgcgcg atggccaccg tccgctcggc ggccgccgcc gggttcgcga
     1381 cgcccatgtt ggtcacgatc accgtgccgg cctcgcggca cggcggcagg agggcgcgca
     1441 tgcgggcctc gagctgcgcg ttgtagccgc gcgacgggtt tgccatgcgg tcgcggtggc
     1501 cgaacgccat ggtgcgctcg ccgatgcact cgatgatcat cgcgtcgagc cggcccttgc
     1561 gggcaagctc gacggcagga ccgagccggt cggccgagaa gccggcgccg gtgccgatgc
     1621 ggaaaacctc gcccatgtgc tccgatgccg ctctttgctg ctgccccatc ctcatcatga
     1681 agatagggcg tctatgatga ccgcgcgcgg gaggcgctcc tctcagcgcc gcctcccggc
     1741 gaggcggtca tgatgacgat gcgctagtcg ccgccgaggt tcgcggcctc ggggaagaac
     1801 atctcctcga gagatttcgg cgcctgcttg atcgatccga tcttggccat gaactgcgcc
     1861 gtcttgaaga ccttctcggg cttcagcgtg tagcggtagt ccttgtcctc gatgattgcg
     1921 aggatgtcct cgacggtgtt cttggtgtcc ttggcgagct cgagatagag cttggcggcc
     1981 gcgcgcttgt ccttgttcac ggtgtcgatg gactcggaca gggcctcgaa gaacgccttg
     2041 tagaccttcg ggttggcctc gcggaacttc gagctcgtgg tcagcacgat ggcgctcgcc
     2101 gggccgccca ggatctcgta gttcgtcgtg atcagccggg cccccgggat ggtcttgatc
     2161 tcctgctcgt agaacggcga ggtcgcgaag tgggcgttga cgccgccgct ctggttgatc
     2221 agcgccacca tggcgtcggg atgcgagagc gagacggtga ggggatcgag gcgcgcgtac
     2281 tcggcctcgc cccaggtcgc ggcggcggcc atctgcagca tgatcgcctg ggtcgagatc
     2341 ttggccgagg ggacggcgat cttgtccttc gaggtgaagt ccttgatcga cttcacctcc
     2401 gggttccggg tgacgaggta gagcgggtac gtcgtcatcg ccgcgacgcc cttgatgccg
     2461 acggagcccc gcgtcttgtc ccacagcgtg atcagggacg gcgcgccttg cgcgacgaag
     2521 tgcatggtcc cggagaggag cccgtcgttc atgacgctcg ggcctgcgac cttggcccag
     2581 ttcaccttga cgtcgggcag gcccgccgcc ttggcgcgct tctcgagaat gccctcgcgc
     2641 tccatgacca tgaggggcag gaaggccacg ccgtactgct gcgcgatggt gacttccgag
     2701 acctcggcgc gcgcgggcgc agtcgcgata aggcaacccg ccactgcggc gattgcggct
     2761 cctgtccaaa ggcgcattcc atcccccctt gctgtcttgg ggcccataga ggctcaggcc
     2821 ggccgcgggg tcaatcggtg ttgccggatt gcgtcagtcc acgcaaaaag gcggtgcatc
     2881 tcgcctctat ccaccgcgat tgccttgctt tggacacatc cgggcgcgcg taagggagat
     2941 cacagcacca caaaaaaggt gcggggagag tcgtcaagaa tgccgtatcc agcgatggcg
     3001 ctcgcgagcg ccaccggcca aggcaggcca tttgcgggcg atacgcccgt ccgactgcgc
     3061 cgcggcgccg cccctgagcg gaagggcttc gtgcccctgg tcgcacgggc gctgttcgtc
     3121 tgcacggccc tcggtgccgc c
//
LOCUS       DASQWN010000461         2015 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_82043, whole genome shotgun sequence.
ACCESSION   DASQWN010000461 DASQWN010000000
VERSION     DASQWN010000461.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2015)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2015)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2015
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_82043"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            189..1943
                     /locus_tag="VE686_08680"
     CDS             189..1943
                     /locus_tag="VE686_08680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009764409.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HYY84557.1"
                     /translation="MATDRVERRLTAILAADVAGYSRLVGEDEEGTLAQLKGHRRALV
                     DPQIAKHRGRIVKTTGDGMLAEFASVVDALRCAVEIQRGMAERNSALAPARRIEFRIG
                     INVGDIVAEGDDIFGDGVNVAARLEGVSQPGGICVSARVQEDAEGKLDVAFEDMGEQH
                     LKNIARPVHAFRVRLTGAAAAPPATLELPDKPSIAVLPFDNMSGDHEQGYLTDGIVEA
                     ITAALSRIRSFFVIARNSALTYKGRAVNVRDIGRELGVGYLLEGSVQKAGNRLRITVQ
                     LIETVTGAHVWAGRYDGKLDDIFELQDHITEQVAGALQPSIRLAEIERSRRKPPQELG
                     AYDYTMRAMPHVWALEKEESAKALELLDRALAIDPDYPLALSLAGWCHAQRSVYNWAA
                     DIPQSQVCAVRLAEKAAELSADDPIVLAVLGAVHTFVRNHGTARVLLERAVALDPNAA
                     WAWSRLGWLDNYSDRPSEAIEKFERAMRLSPLDPMNFNNYVGLASAHEVAEDYDKAIA
                     LYRRGLEERPHAVWIYRNLASSLSGAGRMEEAKQAYAQMMSSYPDMTVSRYRQAMVFS
                     PTALDRMVGNLRKLGLPD"
BASE COUNT          358 a          670 c          666 g          321 t
ORIGIN      
        1 ccacgtcgcc agatcgagac acgacacgcc atcggcatca gctggcggaa gcgcgtctcg
       61 gggatcccgg cagctacctt atggcgctac gtagactcag ggcgctcgcc gctttggcgc
      121 aatgccggcc ctagggtatt ctctccctct ggcatcgact gcagaggcga accgcaggag
      181 aatccggggt ggcgaccgac cgcgtggaac ggcgcctgac agcgattcta gcggccgacg
      241 tcgccgggta cagccggctg gtcggagagg atgaagaggg cacgctcgcc cagctgaagg
      301 gccatcgacg cgcgctcgtc gacccgcaga tcgccaagca tcgagggcgg atcgtcaaga
      361 ccaccgggga cggcatgctt gccgaatttg cgagcgtcgt cgacgcattg cggtgcgcgg
      421 tcgagatcca gcggggtatg gcggagcgca actccgcgct cgctccggca cgccgtatcg
      481 agtttcgcat cggcatcaac gtcggcgaca tcgtagccga aggcgacgac atcttcggag
      541 acggcgtcaa cgtggctgcc cggttggagg gcgtttcgca gccgggtggc atctgtgtct
      601 cggcgcgcgt acaggaggat gccgagggca agctcgacgt cgccttcgaa gacatgggcg
      661 agcagcacct caagaacatc gcacgcccgg tccacgcttt ccgcgtccgt ctcaccggcg
      721 cggctgccgc cccgccggcc actctcgagc ttccagacaa accgtcgatc gcggtcctgc
      781 ccttcgacaa catgagcggt gatcacgagc aaggatatct gacggacggc atcgttgagg
      841 caatcacggc ggccctgtcg cgcatccgct cgttcttcgt catcgcgcgc aattccgcct
      901 tgacctacaa gggccgtgcg gtgaacgtgc gcgacatcgg gcgggaactc ggcgtcggct
      961 acctgctcga gggaagcgtg cagaaggcgg gcaaccgcct gcgcatcact gtgcagctga
     1021 tcgaaacagt cactggcgcg cacgtttggg caggccgata cgacggcaag ctcgacgaca
     1081 tcttcgagct gcaggaccat attaccgagc aggtcgcggg tgcgctgcag ccctccatcc
     1141 ggctcgccga aatcgagcgc tcgcggcgca agccgccgca ggagcttggc gcctacgact
     1201 acaccatgcg agcgatgccg cacgtgtggg cgctcgagaa ggaagagagc gccaaggcgc
     1261 tggagctcct cgaccgcgcc ttggcgatcg accccgacta cccgctggcg ctctcactcg
     1321 cggggtggtg ccatgctcag cgctccgtct acaactgggc cgcagacatc ccacagagcc
     1381 aggtatgcgc cgtgcggctt gccgaaaagg cggccgagct cagcgcagac gatcctatcg
     1441 tcctggcggt gctcggcgcc gtgcacacct tcgtgcgcaa ccatggcacc gcgcgcgtgc
     1501 tcctggagcg ggcggtggca ctcgacccga atgccgcctg ggcgtggagc cggttgggct
     1561 ggctcgacaa ctattccgac cggcccagcg aggcgatcga gaagttcgag cgcgccatgc
     1621 gcctcagccc cctcgatccg atgaacttca acaactacgt gggcctcgcg tcggcacacg
     1681 aggtcgcgga ggactacgac aaggccatcg ccctttaccg ccgcggcctc gaggagcggc
     1741 cgcacgccgt gtggatctat cgaaatctcg cttcgtcgct ctccggtgct ggccggatgg
     1801 aagaggcgaa gcaagcctat gcgcagatga tgagcagcta tccggacatg acggtctcgc
     1861 gctaccggca ggcgatggtc ttttcgccga ccgctctcga ccgcatggtt ggaaacctta
     1921 ggaagctcgg cttgccggat tgacgcggat gccggctcgg agcgaggcgg tccccctcgc
     1981 gccatgcacc acggccatca tggccatggg gcgtc
//
LOCUS       DASQWN010000462         2009 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_932771, whole genome shotgun sequence.
ACCESSION   DASQWN010000462 DASQWN010000000
VERSION     DASQWN010000462.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2009)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2009)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2009
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_932771"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..521
                     /locus_tag="VE686_08685"
     CDS             <1..521
                     /locus_tag="VE686_08685"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY84558.1"
                     /translation="FLGATAMGAQPAAAQSLFDILFGRPIARAPVYEPTYYPYAPHFE
                     RAPVRRRPKVVRAAPPVQMPAKPKAVGQVTNPVPELLADSTLRRGDIVVFPDGPRVFN
                     GDHGTRHSLADFEPVSRAASLVPASTRKLVSNLKPSVNMAWSTDKPAAQNKLAVNTRD
                     VETTGSVRPARR"
     gene            571..1020
                     /locus_tag="VE686_08690"
     CDS             571..1020
                     /locus_tag="VE686_08690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018095740.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupin domain-containing protein"
                     /protein_id="HYY84559.1"
                     /translation="MTETSCRKVRSGPEFVGKQGLTYAPGISAESAGSRGIHLQTLSM
                     PPGARAKAHKHEAHETAIYVLSGEAGMWFGERLEEHLSMGPGDYLYIPADVPHLPYNA
                     SETEPCLAVIARTDPNEQESVVLMPELDDVPAREPASAGPRLSPSGR"
     gene            complement(1017..1394)
                     /locus_tag="VE686_08695"
     CDS             complement(1017..1394)
                     /locus_tag="VE686_08695"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY84560.1"
                     /translation="MRVLQGSAAALCCVIVVASLPAEARGGRGRSIGSSRIVAAPSET
                     RVKAVYVAPQPRTLRGTLLVGRRTTAPSPLRHGVAAGAPGAFPDAIPAGTSLAAPEVR
                     QVAHGACPAERLVGSGAGFCQLN"
     gene            complement(1498..>2009)
                     /locus_tag="VE686_08700"
     CDS             complement(1498..>2009)
                     /locus_tag="VE686_08700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020087230.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="TIGR00645 family protein"
                     /protein_id="HYY84561.1"
                     /translation="PLPAIIFSSRWLQLPLYLGLIVAQCVYVFLFIKELIHLVVHAPS
                     FSEQQIMLVVLGLIDVVMISNLLMMVIVGGYETFVSRLGLQGHPDQPEWLSHVNAGVL
                     KVKLAMAIIGISSIHLLRTFIEAGHVGTDKTTYTTSGIVLQTVIHSIFILSAIGIAYV
                     DRMSQAEHH"
BASE COUNT          346 a          688 c          703 g          272 t
ORIGIN      
        1 tgttcctcgg cgccactgcg atgggcgcgc agcccgcggc ggcccagagc ctgttcgaca
       61 tcctgttcgg ccggcccatc gcccgggccc ccgtgtacga accgacgtac tacccctacg
      121 ccccccattt cgagcgcgcg cccgtgcgtc ggcggccgaa ggtcgtccgg gccgcgccgc
      181 cggtccagat gccggcgaag ccgaaagccg tcggccaggt gaccaaccct gtgccggagt
      241 tgctcgccga cagcaccctg cgccgcggtg acatcgtggt gttccccgac ggaccgcgcg
      301 tgttcaacgg cgaccacggg acgcggcatt cgctcgccga tttcgagccc gtctcgcgcg
      361 ccgcgagcct cgtgcccgcc tccacgcgca agctggtctc gaacctgaag ccaagcgtca
      421 acatggcctg gagcaccgac aagccggcgg cccagaacaa gctcgccgtg aacacgcgcg
      481 acgtggagac gacgggcagc gtgaggcccg ctcgacggta ggtttccggg tcccgcatcg
      541 ccggcccgac gcgccggcga ggagcccgcc atgacagaga cctcctgccg caaggtgcga
      601 tccggcccgg agttcgtggg caagcagggc ctcacctacg cgccgggcat ctcggccgag
      661 agcgcgggct cgcgcggcat ccaccttcag acgctctcca tgccgccggg cgcccgcgcc
      721 aaggcgcaca agcacgaggc gcatgagacg gcaatctacg tgctctcggg cgaggccggc
      781 atgtggttcg gcgagcggct cgaggagcac ctctccatgg gcccgggcga ttacctgtac
      841 atccccgccg acgtaccgca cctgccctac aacgcgagcg agaccgagcc ctgccttgcc
      901 gtcatcgccc ggaccgaccc caacgagcag gagagcgtcg tgctgatgcc ggagctcgac
      961 gacgtgcccg cccgcgagcc ggcgagcgca gggcctaggc tctctccgtc cggccgctag
     1021 ttgagctggc agaatccggc gcctgagccg acgaggcgct cggcagggca cgcgccgtgg
     1081 gccacctgac ggacttcggg cgccgcgagg gacgtaccgg ccgggatggc gtcggggaac
     1141 gcgcccggag cgcccgcggc gaccccgtgg cgcaacgggg atggggcggt cgtcctcctt
     1201 ccgaccagca gcgtgccgcg caaagtgcgg ggctgcggcg cgacgtacac cgctttgacg
     1261 cgggtttcgc tgggcgccgc aacgatgcgg ctcgagccga tgctgcggcc gcgcccgccc
     1321 cgggcctcgg caggaagact ggccacgacg atcacgcagc agagcgccgc ggcagaacct
     1381 tgaaggacgc gcatggaagc ctcagccggc agacccgggt gaaagcctta cctgcagact
     1441 cgttgacgcc cggtaacgcc gtcggtcgga aactctggag agcggcggag ccgcggctca
     1501 gtggtgctcg gcctgcgaca tgcgatccac gtacgcgatg ccgatggccg agaggatgaa
     1561 gatcgagtgg atcaccgtct gcaggacgat gccggacgtc gtgtaggtcg tcttgtcggt
     1621 cccgacgtgg ccggcctcga tgaacgtccg cagaaggtgg atcgacgaga tgccgatgat
     1681 cgccatcgcg agcttcacct tgaggacgcc ggcattgacg tggctcagcc actccggctg
     1741 gtcaggatgg ccttgcaggc cgaggcggga gacaaaggtc tcgtagccgc cgacgatcac
     1801 catcataagg agattggaga tcatcacgac gtcgatgagc ccgagcacga cgagcatgat
     1861 ctgctgctcg gaaaagctcg gggcgtggac gacgaggtgg atcagttcct tgatgaagag
     1921 gaagacgtag acgcactgcg cgacgatgag gccgaggtag aggggaagct gcagccatcg
     1981 cgagctgaaa atgatggccg ggagcggtc
//
LOCUS       DASQWN010000463         3454 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1171615, whole genome shotgun sequence.
ACCESSION   DASQWN010000463 DASQWN010000000
VERSION     DASQWN010000463.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 3454)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3454)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3454
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1171615"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            36..1193
                     /locus_tag="VE686_08705"
     CDS             36..1193
                     /locus_tag="VE686_08705"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016844204.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase family protein"
                     /protein_id="HYY84562.1"
                     /translation="MELGEDYPELRDSVRRVCERYPGEYWRGLDEASAYPTEFIKELT
                     DGGFLSALIPEEYGGTGLPLRAAAVILEEINAAGCTASQGHAQMYIMGTLLRHGSPEQ
                     KQKYLPKIASGEIRLQAFGVTEPTTGSDTTKLKTRAERRGDKYVITGQKVWTSRALYS
                     DMMLLLARTTPLDEVKRKTEGLSVFLVDLNEARGKGLEIRPLKAMINHNATEVFMDGM
                     EVPAENLIGEEGRGFRYILDGMNAERILVASECVGDGRWFIKKGAAYATERRVFDRPI
                     GQNQGVQFPIARAHAELEAADLMCRKAAALFAAGRDCGADANIAKLLASEATWHAAEA
                     AMQTHGGFSYATEYDIERKWRECRLYQIAPISTNMVLAYVAQHVLGMPRSY"
     gene            1193..2062
                     /locus_tag="VE686_08710"
     CDS             1193..2062
                     /locus_tag="VE686_08710"
                     /inference="COORDINATES: protein motif:HMM:NF024109.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HYY84563.1"
                     /translation="MDEAVSGEAPATIVAGLERAAERIETPCGEGHVVWRRWGAGPPL
                     LLLHGGHGAWTHWIRNIPFFAGTRCVAAPDMPGYGDSALPPDPRDPASLAQALATGLD
                     EVFPGDDPIAIVGFSFGGIIAGHLARLRPDRAGRLVLVGSGGLGLPRPALPLLKSWRR
                     VETEAERVEAHRANLQILMLHDPASIDPLALHLQAQNTARTHIDSPTISKTDTLHRCL
                     HDLRIPLAGIWGEADATTGEFLDTRRELLRSFDSDAEFVAIPGAGHWAQYEAPTAFNA
                     ALDTILNAARQRR"
     gene            2094..3089
                     /locus_tag="VE686_08715"
     CDS             2094..3089
                     /locus_tag="VE686_08715"
                     /inference="COORDINATES: protein motif:HMM:NF015366.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0042597 - periplasmic space [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tripartite tricarboxylate transporter substrate
                     binding protein"
                     /protein_id="HYY84564.1"
                     /translation="MNRRQYLLGLLAAGALPAAAQEGFPQRPIVLANGYPPGGSTDVA
                     ARLLADAAAGHLGSSAKMVIENRPGASGTVAADWLQRQPADGHTLLLSESSSFSIWPS
                     MHVTGTRYRPLDDFTWVATVCTAPMVLVVSPEFPAKTVAEAVEVLKSDRSQDLAFSSS
                     GAGSIPHIGAELLVHTLGPSAKSRHIPYRGGAPAVLAVAKNETAWNVASLGSAAGLME
                     GGLVRPLAVTSPVRFPTFPDVPTFAEAGLPEMTLEIFYLVHAPAGVPASIVEKLNAAC
                     AAGLTNATLRDKFLKAGMRAWEGPNTPATTRKIVEDELSRFKGVSERTGLKIQGG"
BASE COUNT          544 a         1265 c         1155 g          490 t
ORIGIN      
        1 tgcacggaac gattgggaca ggcgagcccg tcaccatgga gctcggcgag gactatcccg
       61 agctgcgcga ctcggtgcgc cgcgtgtgcg agcgctaccc gggcgagtac tggcgcggcc
      121 tggacgaggc ctccgcctac ccgacggagt tcatcaagga gctcaccgac ggcggcttcc
      181 tctccgcgct gatccccgaa gagtacggcg gcaccggcct gcccttgcgc gcggccgcgg
      241 tgatcctcga ggagatcaac gccgccggct gcaccgcgag ccagggccat gcccagatgt
      301 acatcatggg cacgctcctg cggcacggca gccccgagca gaagcagaaa tacctgccga
      361 agatcgcgag cggcgagatc cggctgcagg cgttcggggt caccgagccg acgaccggct
      421 cggacacgac gaaactgaag acgcgggccg agcggcgcgg cgacaagtac gtcatcaccg
      481 ggcagaaggt gtggacctcg cgcgcgctct actcggacat gatgctgctg ctggcgcgca
      541 ccaccccgct cgatgaggtg aagcgcaaga ccgaagggct gtcggtgttc ctcgtcgacc
      601 tcaacgaggc ccgcggcaag ggcctcgaga tccggccctt gaaggcgatg atcaaccata
      661 acgccacgga ggtgttcatg gacgggatgg aggtcccggc cgagaacctc atcggcgagg
      721 agggccgcgg cttccgctac atcctcgacg gcatgaacgc cgagcgcatc ctcgtcgcct
      781 ccgagtgcgt gggggacgga cgctggttca tcaagaaggg cgccgcctac gccaccgagc
      841 gccgcgtgtt cgaccggccc atcggccaga accagggcgt gcagttcccg atcgcccggg
      901 cacatgcgga gctcgaggcc gcggacctca tgtgccgcaa ggccgccgcg ctcttcgccg
      961 ccgggcgcga ctgcggcgcc gacgccaaca tcgccaagct gcttgcctcc gaggcgacct
     1021 ggcacgcggc ggaagcggcc atgcagacgc acggcggctt cagctacgcc accgagtacg
     1081 acatcgagcg caagtggcgc gagtgccgcc tctaccagat cgcgccgatc tccacgaaca
     1141 tggtgctcgc ctacgtcgcc cagcacgtgc tgggcatgcc gcggtcgtac tgatggacga
     1201 agcggtctcg ggcgaggcgc cggccacgat cgtcgcgggc ctcgaacgcg ccgcggagcg
     1261 catcgagacg ccctgcggcg agggccacgt cgtgtggcgg cgctgggggg ccggcccgcc
     1321 actcctcctc ctccacggcg gtcacggcgc ctggacgcac tggattcgca acatcccgtt
     1381 cttcgcgggc acccgctgcg tcgccgcgcc cgacatgccg ggctacggcg actccgccct
     1441 gccgcccgac ccgcgcgatc cggcaagcct ggcccaggcg cttgcgacgg ggctcgacga
     1501 ggtctttccc ggcgacgatc cgatcgcgat cgtgggcttc tcgttcggcg gcatcatcgc
     1561 ggggcacctt gcgcgcctgc gccccgaccg cgccgggcgg ctcgtcctcg tcgggtccgg
     1621 aggcctcggc ctgccccgcc ccgccctccc gctcctcaag agctggcgcc gagtcgaaac
     1681 cgaggcagag cgcgtggagg cgcaccgcgc caacctccag atcctgatgc tgcacgaccc
     1741 cgcgtccatc gacccgctcg ccctgcacct gcaggcgcag aacaccgcgc ggacccacat
     1801 cgacagcccc accatctcca agaccgacac cctacaccgc tgcctgcacg acctgcgcat
     1861 ccccttggcc ggcatctggg gcgaggccga cgccacgacg ggcgagttcc tcgacacccg
     1921 ccgcgaactc ctgcgctcgt tcgactcgga cgcggagttc gtcgccatcc cgggcgccgg
     1981 gcattgggcg cagtatgagg cgcccaccgc cttcaacgcg gcgctcgaca cgatcctcaa
     2041 cgcggcccgg cagcggcgct gacgtccgcg ccccatcatc gagagacgag accatgaacc
     2101 gtcgccaata tctgctcggt ctcctcgccg ccggggcgct cccggcggcg gcgcaggaag
     2161 gcttcccgca gcggccgatc gtcctcgcca acggctaccc gccgggcggc tccacggacg
     2221 tcgccgcgcg tcttcttgcc gacgcggcgg cgggccacct cggctcgagc gccaagatgg
     2281 tcatcgagaa ccggcccggc gccagcggca cggtcgccgc cgactggctg cagcgccagc
     2341 ccgccgacgg ccacacgctc ctcctctcgg agtcgtcctc gttctccatc tggcccagca
     2401 tgcacgtgac cggcacgcgc tatcggcccc tcgacgactt cacctgggtg gcgaccgtgt
     2461 gcacggcgcc catggtgctg gtcgtctcgc ccgagttccc ggcgaagacg gttgcggaag
     2521 ccgtcgaggt gctcaagtcc gatcgctcgc aggacctcgc gttctcgagc tccggcgccg
     2581 gctccatccc gcacatcggg gcggagctcc tggtccacac cctcggaccg agcgccaagt
     2641 cgcgccacat cccctaccgc ggcggcgccc cggcggtgct tgcggtcgcc aagaacgaga
     2701 cggcctggaa cgtagcctcg ctcgggtcgg cagcggggct gatggaaggg ggcctcgtgc
     2761 gccctctcgc ggtcacgagt ccggtgcggt tcccgacctt cccggatgtg ccgacgttcg
     2821 ctgaagccgg gcttcccgag atgacgctgg agatcttcta tcttgtccac gcgccggcag
     2881 gcgtgcccgc gagcatcgtc gagaagctga acgccgcctg cgcggcgggc ctgacgaacg
     2941 cgacgcttcg cgacaaattc ctcaaggccg gcatgcgcgc gtgggaaggc ccgaacaccc
     3001 cggccaccac gcgcaagatc gtcgaggacg agctgtcccg cttcaagggg gtttcggagc
     3061 gcacggggct gaagatccag ggcggctgag gcagatcggg tttcgtcgcc agaaggcggc
     3121 gcagtatggc aggccacctg tggtagtcca tgcggcctag ctgacggcgg cgctgtcgct
     3181 ggataaacgg taaagagcgg tcctatcggt tcgaccggca agcctgatca ccttcgccgg
     3241 ccgggactgc gcatcagggc cgcggcgcga gtcgcggccc ttttccatga ccggccggtg
     3301 acacgattcc gccctgccgt gacacgggcc gcttaccatg gagcgatctc agacggttag
     3361 gattggctgg gggacctgga ttcgaaccaa gactagcgga gtcagagtcc gctcagcggg
     3421 tatagctggc gatcatcgga cgtcaccgcc cgtt
//
LOCUS       DASQWN010000464         4083 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1272066, whole genome shotgun sequence.
ACCESSION   DASQWN010000464 DASQWN010000000
VERSION     DASQWN010000464.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 4083)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4083)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4083
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1272066"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..362)
                     /locus_tag="VE686_08720"
     CDS             complement(<1..362)
                     /locus_tag="VE686_08720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012331969.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX domain-containing protein"
                     /protein_id="HYY84565.1"
                     /translation="MSATDRLYPNRPFLAASVAVFRDRRVLVASRTQAPLEALYSLPG
                     GLVEPGETVAQAALRELREEVAVEAELVGFLRPVEIIARDPDGRVRHHFVVIAHVARW
                     LAGEGTIGLEAGDVRWIE"
     gene            complement(359..1456)
                     /locus_tag="VE686_08725"
     CDS             complement(359..1456)
                     /locus_tag="VE686_08725"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY84566.1"
                     /translation="MSSVRAASAALVVALLAGGARAEPSATVLALDFKVAEFRGPGSQ
                     EAKIVPTTDALRRHKLGNGPFVVVWGGGGAAAIYLSGAELRTQAFAPPSGEGPPLGEA
                     PRDALPGSRLQTAGPVTVHLAGPTTVYVHGALGTGGEARELVVSERQPVAMGGGVQKV
                     PVERTRVEAGADAVFEDREPRLADLDGDGGTEVLVVKSYQAKGSALAVVAKRDGAWRV
                     VAETPAIGQPQRWLNPAAVAAFQGDGKPAIAVVKTPHLDGVLQVWAYDGGKLVLRHEA
                     AGYTNHVFGSPAQELAAAVDLDGDGVPELAIPTLDRGSLAILSLKGSIKELRRIALPA
                     KAATGVAALGSGRTAHILVGLEDGRVLDIRP"
     gene            complement(1449..2171)
                     /locus_tag="VE686_08730"
     CDS             complement(1449..2171)
                     /locus_tag="VE686_08730"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018043428.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HYY84567.1"
                     /translation="MLLTGASRGIGHATVKRFSAAGWRVITASRHGFPENCPWEMGPD
                     DHLQVDLASPDDTLRAIEEVRNRLVPEGGCLHALVNNAGISPKGAGGARLNALATEFT
                     DWLHVFQVNFFAPMMLARGLCQELERAKGSIVNVTSIAGSGVHPFAGAAYGTSKAALA
                     ALTREMAADFGPLGVRVNAISPGEIDTAILSPGTEKLIDQIPLRRLGTPDEVAKAIYF
                     LCTEASSYVSGAELHINGGQHV"
     gene            complement(2266..2880)
                     /gene="pdxH"
                     /locus_tag="VE686_08735"
     CDS             complement(2266..2880)
                     /gene="pdxH"
                     /locus_tag="VE686_08735"
                     /EC_number="1.4.3.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019169837.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004733 - pyridoxamine phosphate oxidase
                     activity [Evidence IEA];
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_process: GO:0008615 - pyridoxine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxamine 5'-phosphate oxidase"
                     /protein_id="HYY84568.1"
                     /translation="MNVNALTSGDFTQASEPWELFASWLDEASRSEPNDPTAMALATA
                     DAEGLPDVRMVLLKQADESGFVFYTNVESAKGQELAANPQAALVVHWKSLRRQVRARG
                     TVTKVSDAEADAYFQSRARDSRIGAWASQQSRPLESRFALEKAVAFYAAKHAVGEVPR
                     PPYWTGFRIAPVSIEFWQDRPFRLHDRLVFTRAGEGWSKTRLYP"
     gene            2996..3397
                     /locus_tag="VE686_08740"
     CDS             2996..3397
                     /locus_tag="VE686_08740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009764811.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RT0821/Lpp0805 family surface protein"
                     /protein_id="HYY84569.1"
                     /translation="MVAIALAGSAGACSFPVASLVSAETTGSITPKVVSPLSAELGAE
                     DWRRAKGAMAVALDPQGSGSPVTWDNPDTGFKGTFTPVGQPFVNGDEICRAFLAGLNG
                     QATSSSLQGTACRLSGEEWAIKDVKPWRRPA"
     gene            3499..>4083
                     /locus_tag="VE686_08745"
     CDS             3499..>4083
                     /locus_tag="VE686_08745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020092952.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DnaJ domain-containing protein"
                     /protein_id="HYY84570.1"
                     /translation="MRDPYDILGVSRTATEAEIKKAYRKLAKAYHPDRNANDPKAKDK
                     FAEANSAYEILGEPEKRAQFDRGEIDADGKPRFQGFEGFGRGGGGGQAHGFDFPFGAK
                     RGRGTAGGGAGAEDIFSHLFGESFRSAERGQPRSARGEDLAAELTVTLEDVAQEAKKR
                     ITLPTGREVDVVVPKGVSDGQTIRLRGLGRSGWNG"
BASE COUNT          644 a         1383 c         1456 g          600 t
ORIGIN      
        1 tcctcgatcc agcgcacgtc gcccgcctcc agtccgatgg ttccttcgcc cgccagccac
       61 cgcgcgacat gcgcgatgac gacgaaatgg tgcctcacgc gcccgtccgg gtcgcgggct
      121 atgatctcga cagggcgcag gaatccgacg agctccgcct cgaccgcgac ctcctcgcgc
      181 aattcccgca acgcggcctg tgcaaccgtc tcgccaggct ccaccagccc gcccggcagc
      241 gaatagagcg cctcgagcgg agcttgagtg cgcgacgcca cgagcacccg ccgatcgcgg
      301 aacaccgcga cggaggccgc caggaagggg cggtttggat aaaggcggtc ggtcgcgctc
      361 acggccggat gtcaaggacg cgcccgtcct cgagccccac gaggatatgg gccgtgcgcc
      421 cggagcccag ggcggcgact cccgtcgcgg ccttcgccgg cagggcaatg cggcgcagct
      481 ccttgatgct tcccttgagg gacaggatcg cgagggagcc gcggtcaagg gtcgggatgg
      541 cgagctcggg gacgccgtcg ccgtcgaggt cgaccgccgc cgcgagctct tgcgccggcg
      601 aaccaaagac gtggttcgta taccctgcgg cctcatggcg gagaacgagc ttcccgccgt
      661 cgtaggccca tacctggagc acgccgtcga ggtggggggt cttcacgacg gcgatggcag
      721 gcttgccgtc gccctggaag gccgcgacgg cagccggatt gagccagcgc tggggctgac
      781 cgatcgccgg cgtctcggca acgacacgcc aggccccgtc gcgcttcgcc acgacggcaa
      841 gggccgagcc tttggcctgg tacgacttga ccacgaggac ttcggtgccg ccgtcgccgt
      901 caaggtcggc gagccggggc tcccggtcct cgaagacggc gtcggccccc gcctcgaccc
      961 gggtgcgctc gaccgggacc ttctggacgc cgccgcccat ggcgaccggc tggcgctcgc
     1021 taacgacaag ctcgcgcgcc tcgccaccgg ttccgagggc gccgtgcaca tagacggtcg
     1081 tcggaccggc gagatggacg gtcaccgggc cggcggtctg caggcgcgag ccggggaggg
     1141 cgtctcgtgg cgcctcgccc aaaggcgggc cttcgcccga cggcggcgcg aaggcttgtg
     1201 tcctcagctc ggcgcctgac aggtagatcg ccgcggcgcc tccgccgccc caaaccacga
     1261 cgaagggccc atttccgagc ttgtgacggc gcagggcatc ggtggtcggg acgatcttcg
     1321 cctcctgcga gcccggcccg cggaactcgg cgactttgaa gtcgagcgcc agcacggtgg
     1381 cggaaggttc ggcgcgggca cctccggcga gcagggcgac gacaagggcg gcggacgccg
     1441 cgcgtacgct agacatgctg gccgccattg atgtgcagct ccgcgccgct gacgtaggag
     1501 gatgcttcgg tgcaaaggaa gtagatggcc ttcgcgacct cgtcgggcgt accgaggcgg
     1561 cgcaagggaa tctggtcgat cagcttctcg gtcccggggg acaggattgc ggtgtcgatc
     1621 tcgcccggcg agatggcgtt cacccgcacc ccgagcggtc cgaagtcggc ggccatctcg
     1681 cgggtcagcg cggcgagcgc tgccttggag gtgccgtagg cggcgccggc gaaggggtgc
     1741 acgccggagc cggcaatgga ggtcacgttc acgatggaac ccttcgcccg ctcgagttcc
     1801 tggcacagac cacgagccag catcatcggc gcgaagaagt tgacctggaa gacgtgcaac
     1861 caatctgtga actcagtggc gagcgcattg agccgcgccc cgcccgcccc tttgggtgat
     1921 atgcccgcgt tgttgacgag agcgtgcagg cagccgccct cgggaacgag gcggttccgg
     1981 acctcctcga tggcgcgcaa ggtatcgtcg gggcttgcga ggtcgacctg cagatggtcg
     2041 tccgggccca tctcccaggg gcagttctcg ggaaacccgt gccgtgatgc cgtgatgacg
     2101 cgccagcctg cggccgagaa gcgcttcacg gtcgcgtgac cgatgccgcg gcttgccccg
     2161 gtgagcagca tgacccggcg gccctggttg gattgcgaca cgcggagctt tcctaacgga
     2221 gcggggcggc gcgacggtac gcctgcccgg cgaaggggtc caacgtcagg ggtagagccg
     2281 cgtcttgctc cagccctcgc cggctcgggt gaacacgagc cggtcgtgga gccggaacgg
     2341 ccggtcctgc cagaactcga tcgagaccgg ggcgattcgg aaccccgtcc aatagggcgg
     2401 gcgcggcacc tcgccgaccg cgtgcttggc ggcatagaac gcgaccgcct tctcgagggc
     2461 gaagcggctc tcgagcgggc gcgattgctg gctcgcccag gcgccgatgc ggctgtcgcg
     2521 cgcgcggctc tggaaatagg cgtccgcctc ggcgtcgctg accttggtca ccgtgccgcg
     2581 ggcgcgcacc tgccggcgca ggctcttcca gtgcacgacg agcgcggctt gcggattcgc
     2641 ggcgagttcc tggcccttgg cggattccac gttggtgtag aagacgaagc ccgactcatc
     2701 cgcctgcttc agcagcacca tgcgaacgtc cggcaagccc tcggcgtcgg ccgtggcgag
     2761 cgccatggcg gtggggtcgt tcggctcgga gcgggaggcc tcgtcgagcc agcttgcgaa
     2821 cagctcccaa ggctcgctcg cctgcgtgaa gtcaccgctt gttaacgcgt tcacgttcat
     2881 atcctcgaaa cgatcatggc agggagcctc gtgcgtggcg gaccgcggga cgcgtcgcgt
     2941 ttatagggga cttgcggcaa ggggcgaagc cgcccgcaac tccgccgcac ggttggtggt
     3001 agcgatcgcc ctggcaggca gcgccggtgc gtgcagcttt ccagtcgcat ccctggtctc
     3061 tgcggagacc accggctcga tcaccccaaa ggtcgtttcg ccattatcgg ccgagctcgg
     3121 cgccgaggat tggcggcggg ccaaaggcgc catggcggtc gcgcttgatc cgcagggcag
     3181 cggctcgccg gtgacctggg acaaccccga cacgggcttc aagggcacct tcacgccggt
     3241 gggccagccg ttcgtgaacg gcgacgagat ctgccgggcg ttcctggccg gcttgaacgg
     3301 ccaggctacc tcgtcgtcgc tgcaaggtac cgcctgccgg ctctccggag aggagtgggc
     3361 catcaaggac gtcaagccct ggcgcagacc ggcctgagcc gctgggtaca gttgcgagag
     3421 cgcaacactg ctcccatatg ccgggtgtaa tctcgcgagc gggaaccccg ctccaagcaa
     3481 cggcatattc cgaccgacat gcgcgaccct tatgacatcc tgggcgtgtc acgtaccgcg
     3541 acggaggccg agatcaagaa ggcctaccgc aagctcgcga aggcgtacca ccccgaccgc
     3601 aacgccaacg atccgaaggc caaggacaag tttgccgagg cgaactccgc ttacgagatc
     3661 ctcggcgagc cggagaagcg ggcccagttt gaccgcggcg agatcgatgc cgacggcaag
     3721 ccgcgcttcc aggggtttga gggatttggg cgcggcggcg gtggcgggca ggctcacgga
     3781 ttcgacttcc cgttcggtgc caagcgcggc cgcggtacgg cgggcggtgg ggccggggcg
     3841 gaggacatct tctcccacct cttcggcgaa agcttccggt cggccgagcg cggccagccg
     3901 cgttccgccc gcggcgaaga cctcgcggcg gagctgaccg tcacgctcga ggatgtcgcc
     3961 caggaagcga agaagcgcat cacgcttccg accgggcgag aggtcgacgt ggtggtaccg
     4021 aagggcgtct ccgacggcca gaccatccgc ttgcgcggcc tcggccggag cggctggaac
     4081 ggc
//
LOCUS       DASQWN010000465         2606 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1471371, whole genome shotgun sequence.
ACCESSION   DASQWN010000465 DASQWN010000000
VERSION     DASQWN010000465.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2606)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2606)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2606
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1471371"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(33..353)
                     /locus_tag="VE686_08750"
     CDS             complement(33..353)
                     /locus_tag="VE686_08750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007567539.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY84571.1"
                     /translation="MPRIVSDEDARGGERGRPTLIALVSALVLVGVALAGYMMWSGSQ
                     SPDAAAQNASRATTTGSVTGKGSGPSSSNTSAVPSANPAYPAPAVPAANNNGRTAGPT
                     SDGK"
     gene            681..>2606
                     /locus_tag="VE686_08755"
     CDS             681..>2606
                     /locus_tag="VE686_08755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009493336.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 2 TIM barrel-domain
                     containing protein"
                     /protein_id="HYY84572.1"
                     /translation="MPDSRISLDGTWEFLHISEDRLAGPAEVRQIVVPAPWQAQFADL
                     RMRAGIGIYRRQIDLPQEWLHDCIWLRFGAVFHNVRVFVNGELAGTNEGGFLPFSFEV
                     TRHLRPGINEIKVRVDSPTDNPAEFPDSPFAEIPFGKQSWYGPLSGIWQPVYVERRVV
                     DHITRVRLVPNLESGRVTAGAFFAKAPTQFSEVRIEVRDPEGATALELSRPVQPGVTS
                     LPFEFAVEDVRAWSPDSPNLYRIRLELRREGEPLDAVEETFGFRTFETRDSKFYLNGE
                     PFYMRAALDQDYYPDTICTVPSVEFLEDQFRKAKELGLNCLRCHIKAADPRYYEVADR
                     MGMLIWTELPNGGMATDRSRGRKEKLLKGIVDRDGNHPSIAIWTIINENWGVDLVNDA
                     DHRDWLKRTFAWLKAYDPTRLVVDNSPLAPSFHVETDIADYHFYAAIPDHRAAWDKFV
                     DDLANRGSFLYSPHGDAVITGREPLMCSEFGNWGLPYPKDLRDEKGEEPWWFETGHDW
                     GEGVMYAHGVENRFNDWSLDRVFGDLRRFVTAAQWQQFRALKYQIEAMRRKPQLAGYV
                     ITELHDCHWESNGLLDMRRNPRVFHELFPIVNADTVIVPRWKRLSHWAGETARIEIAI
                     AHGAGPAIDGAKLQVRLG"
BASE COUNT          418 a          909 c          869 g          410 t
ORIGIN      
        1 catcagccaa ttggccgatg tcgacgcttg ggctacttgc cgtcgctcgt cggcccggcg
       61 gtgcggccgt tgttgttcgc ggccggcacg gccggagccg gataggccgg gttggcgctc
      121 ggcaccgccg aggtgttgga cgacgacggc ccggagccct tgcctgtcac cgatcccgtc
      181 gtcgtcgcgc gagacgcgtt ctgcgccgcg gcgtcgggcg actgcgagcc gctccacatc
      241 atgtagccgg cgagagcgac gccgacgagc acgagggcgg acacgagggc gatcagcgtc
      301 gggcgaccgc gctcgccgcc cctggcatcc tcgtctgaaa cgattcgagg catggtcttt
      361 gggtccctct cggttcggtt cgcccgctcc aagcgggccg gacggcgcca tctcaatcgg
      421 gaacgcgggc cgcgaacgag gggttccgcc gtgtcgcggc ggcccgtccg cgcacaagga
      481 gccggagcag agggatcgat gtcgcgcctc gcccgttttc agcaaaagcg tgtggaccgg
      541 ggggcggcgg acggcgtagg tcgcgcgcga cgctaaaatc cttccactga ttcggattgc
      601 gcaccgccac gatggcgccg tgcgggtcct tatagttccg gccgcggagc tcggtcgaag
      661 cgacgtttgg ggaacccagc atgcccgatt cccgcatcag cctcgatggg acgtgggaat
      721 tcctccacat ctcggaggac cgcctggccg gtcctgccga ggtgcgccag atcgtcgtcc
      781 ctgcgccatg gcaggcccag ttcgcggacc tgcgcatgcg cgccggcatc ggcatctacc
      841 ggcgccagat cgacctcccg caggaatggc tgcacgactg catctggctg cgcttcggcg
      901 ccgtgttcca caatgtgcgg gtcttcgtga acggcgagct cgcgggcacg aacgagggcg
      961 ggttcctgcc cttctcgttc gaggtcacgc ggcacctgcg gcccggcatc aacgagatca
     1021 aggtgcgggt cgactcaccg accgacaacc cggccgaatt cccggattcg cccttcgccg
     1081 aaatcccgtt cggcaagcag agctggtacg ggcccctctc gggcatttgg cagcccgtgt
     1141 acgtggagcg ccgcgtcgtc gaccacatca cgcgcgtgcg cctcgtcccg aacctcgaga
     1201 gcgggcgcgt caccgccggc gcgttcttcg ccaaggcgcc gacgcagttc tcggaagtgc
     1261 gcatcgaggt gcgagacccg gaaggcgcga cggctctcga gctctcacgg ccggtgcagc
     1321 ccggggtgac gagcctgccg ttcgaattcg ccgtcgagga cgtccgggcg tggtcgccag
     1381 acagcccgaa cctgtaccgc atccggctgg agctgcgccg cgagggcgag ccccttgacg
     1441 ccgtcgagga gaccttcggc ttccgcacct tcgagacgcg cgacagcaag ttctacctta
     1501 acggcgagcc gttctacatg cgcgccgccc tcgaccagga ttactacccg gacaccatct
     1561 gcacggtgcc ctcggtcgag ttcctagagg accagttccg taaggcgaag gagctcgggc
     1621 tcaactgcct gcgctgccac atcaaggcgg ccgacccccg ctactacgag gtcgcggacc
     1681 ggatgggcat gctgatctgg acggagctgc cgaacggcgg catggcgacc gaccgctcgc
     1741 gcggccgcaa ggagaagctc ctcaagggca tcgtcgaccg cgacggcaac catccctcga
     1801 tcgcgatctg gaccatcatc aacgagaact ggggcgtcga cctcgtcaac gacgccgacc
     1861 accgcgactg gctcaagcgc accttcgcct ggctcaaggc ctacgatccg acgcggctcg
     1921 tggtcgacaa ctcgccgctc gcgccgagct tccacgtcga aaccgacatc gccgactatc
     1981 acttctatgc ggcgatcccg gatcatcgcg cggcctggga caagttcgtc gacgatctcg
     2041 cgaaccgcgg ctccttcctc tactcgccgc acggcgacgc ggtgatcacc ggccgcgagc
     2101 ccctcatgtg ctcggagttc ggcaactggg gcctgcccta cccaaaggac ctgcgcgacg
     2161 agaagggcga ggagccctgg tggttcgaga ccgggcacga ctggggcgag ggcgtcatgt
     2221 acgcccacgg cgtcgagaac cggttcaacg actggagcct cgaccgcgtc ttcggcgact
     2281 tgcgccgctt cgtcacggcc gcgcaatggc agcagttccg ggccctcaag taccagatcg
     2341 aggccatgcg ccggaagccg cagcttgccg gctacgtcat caccgagctg cacgactgcc
     2401 attgggagtc gaacgggctt ctcgacatgc ggcgcaatcc gcgcgtgttc cacgagctgt
     2461 tcccgatcgt gaacgccgac acggtgatcg tgccgcgctg gaagcgcctg tcgcactggg
     2521 ccggcgagac ggcgcgcatc gagatcgcga tcgcgcacgg cgctgggccg gcgatcgacg
     2581 gcgcgaagct ccaggtgcgc ctcggc
//
LOCUS       DASQWN010000466         2003 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_535436, whole genome shotgun sequence.
ACCESSION   DASQWN010000466 DASQWN010000000
VERSION     DASQWN010000466.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2003)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2003)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2003
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_535436"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1665
                     /gene="ligD"
                     /locus_tag="VE686_08760"
     CDS             <1..1665
                     /gene="ligD"
                     /locus_tag="VE686_08760"
                     /EC_number="6.5.1.1"
                     /inference="COORDINATES: protein motif:HMM:TIGR02776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006303 - double-strand break repair via
                     nonhomologous end joining [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA ligase D"
                     /protein_id="HYY84573.1"
                     /translation="GATSFAALQAALSDTHSGIAEGAVLYAFDLLYLDGEDLRGLPLE
                     ERKARLAAVVPAGPGGAIRYSEHIEGEGEAMVRNACRLGLEGVISKRRDLPYRPGRGS
                     DWLKTKCTQRQELVIAGFVPSTALKNAIGSLVLGYYRGGRLIHAGKTGTGFTADLARE
                     LWRKLNPLRRDTPAFPDKLTSEQRRGAVWVEPKLVGEVELRGWTTDGLLRHAAFKGLR
                     EDKAPEDVVLEAPVGGAPATTQAAAAAKMKAGGAPEVAGVRLTHPDRILWEDEGVTKQ
                     GLAEFYEDIAPWVLPHLVHRPLALVRCPSGAGQGCFFQKHAFAGLSDLVRREMVRDES
                     GEEEVLYIEDLGGLIALVQAGVLEIHPWGSTIGDVDRPDRVVIDLDPGEGVDYPTIIA
                     AAREAHERLSAFGLESFVKTTGGKGLHVVCPLTPDAGWDEVKSFARDFAEAMERDSPT
                     RYISTSGKRDRAGKIYVDYLRNGRGATAIAAFSTRARPGAPVATTLAWDELSPAIKPN
                     HFTVENLPARLRTLRRDPWAALFTLDQRLPEKKARARPAARAKGRA"
BASE COUNT          303 a          753 c          679 g          268 t
ORIGIN      
        1 ggcgcgacga gcttcgcggc gctccaggcc gcgctgtcgg acacgcattc gggcatcgcc
       61 gaaggcgccg tgctctacgc cttcgatctg ctctacctcg acggcgaaga cctgcgcggg
      121 ctgccgctcg aggagcgcaa ggcccgcctc gcggcggtcg ttccggcggg cccgggcggc
      181 gccatccgct acagcgagca catcgagggc gaaggcgagg cgatggtccg aaacgcctgc
      241 cggctcggcc tcgaaggcgt catctcgaag cgccgcgacc tgccctatcg ccccggccgc
      301 ggaagcgact ggctcaagac caagtgcacg caacgccagg agctcgtcat cgccggcttc
      361 gtgccatcga cggcgttgaa gaacgccatc ggctcgctgg tgctcgggta ctaccgcggc
      421 gggcgtctca tccacgccgg caagaccggc accgggttca cggccgacct cgcgcgcgag
      481 ctctggcgca agctcaaccc gcttcgccgg gacacgcctg cgttccccga caagctcacc
      541 agcgagcagc ggcgcggcgc cgtctgggtc gagccgaagc tcgtcggcga agtcgagctg
      601 cgcggctgga cgaccgacgg ccttctccgc cacgccgcct tcaagggcct gcgcgaggac
      661 aaagcgccgg aggacgttgt cctcgaggcg cctgtcggcg gcgctccggc gacaacgcag
      721 gcggcggccg ccgcgaagat gaaggccggc ggcgccccgg aggtcgcggg cgtccgcctc
      781 acccatccgg accgcatcct gtgggaggac gagggggtca ccaagcaggg cttggccgaa
      841 ttctacgagg acatcgcccc ttgggtgctg ccgcacctcg tccaccggcc gctagcgctc
      901 gtgcgctgcc catcgggggc cggccagggc tgcttcttcc agaagcatgc cttcgcgggc
      961 ctctccgacc tcgtccggcg cgagatggtg cgggacgaga gcggcgagga ggaagtcctc
     1021 tacatcgaag acctcggcgg cttgatcgcg ctcgtccagg ccggcgtgct cgaaatccac
     1081 ccttggggct cgaccatcgg cgatgtcgac cggcccgacc gcgtcgtcat cgacctcgac
     1141 ccgggcgagg gcgtcgacta cccgaccatc atcgcggccg cgcgggaggc acacgagcgc
     1201 ctctcggcct tcggcctcga aagcttcgtc aagaccaccg gcggcaaggg tctgcacgtc
     1261 gtctgcccgc tcacccccga cgccgggtgg gacgaggtca agtcgttcgc ccgcgacttc
     1321 gccgaggcca tggagcgcga ttcaccaacg cgctacatct cgacctccgg caagcgcgac
     1381 cgcgccggga agatttacgt cgattatctg cgcaacggcc gcggcgccac cgcgatcgcc
     1441 gccttctcga cccgcgcgcg gcccggcgcg ccggtggcga cgaccctggc gtgggacgag
     1501 ctctcgccgg cgatcaagcc gaaccatttc accgtcgaaa acctgcccgc ccgcctgcgc
     1561 accctgcgcc gggacccctg ggccgccctc ttcaccctcg accagcgcct gccggagaag
     1621 aaggcccgcg cccgacccgc tgcccgagca aaagggcggg cgtaaccgct gcggcgggag
     1681 aggggcggcc gagcttgcga aggaaccgtg gctgtcgcgg ctcgttggga tggcacatcg
     1741 gacacaccgg agattcgcca gtgacatcga cacgcctgct ccatggagct gccctcgccg
     1801 cgctgatcct cggtgcgccc ctggcgttcg cccaaacctc atcgtcgccg acgcagtcct
     1861 ctccttcggc cggccagacg gcgtcgcccc cggcggcgac gcagaccccg ggcggctcgg
     1921 cggcgacctc tggatcagcc ggaacatccg gcgcggcagg aacctccgga tcggccggaa
     1981 cctccggatc ggcaggtgcg ccg
//
LOCUS       DASQWN010000467         3919 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_83033, whole genome shotgun sequence.
ACCESSION   DASQWN010000467 DASQWN010000000
VERSION     DASQWN010000467.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 3919)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3919)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3919
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_83033"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..446
                     /locus_tag="VE686_08765"
     CDS             <1..446
                     /locus_tag="VE686_08765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009450455.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HYY84574.1"
                     /translation="IMVKGILGPKTANLVFALATVYMPVFFRIARSGAMAEAGLTYVE
                     AARSIGLSEGTILYRHVLRNVLPLILVQYVILFPLVLQIEGALGFLGLGVQPPTPDWG
                     AILQQSKDYILLAPWMSAFPGLAILWTALGLMLVGRSLQRRLDRR"
     gene            469..1353
                     /locus_tag="VE686_08770"
     CDS             469..1353
                     /locus_tag="VE686_08770"
                     /inference="COORDINATES: protein motif:HMM:NF019474.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HYY84575.1"
                     /translation="MPNAQPLWASLSPEEHEFQYNPQRAFPNFPDHQAERAPANASAR
                     ANLKSYVDISYGEHPLRRVDVYPAAGAAAPAPVHVFFHGGYWRAQDKENFGFVARELV
                     ARGVTTVIANYELCPASTLDAVVDSALAAIDWTCRSIADFGGDPKRISLSGHSAGAHL
                     CAEALATDWRSRGVDPTRFRGAVLISGIFDPEPTIRTTVNAQLNLDPEIAARHNVEVR
                     PPVVDCPTWIFAGGREPWQWLDQSYRYAHHLHRHGRDPEVHVLPGWNHFDIIAQYMDE
                     GSPILRAALASALGTQGR"
     gene            1355..1987
                     /locus_tag="VE686_08775"
     CDS             1355..1987
                     /locus_tag="VE686_08775"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY84576.1"
                     /translation="MQRSWRMTVYDLAVAGSATVDGGAHRFFYLRNGQMSAPSRGPAA
                     LEPDSGFFASETTSLEGEGTLWVYEAAPFETTLLGGGASVVLSRRFEREFGPPLLLRA
                     DRIESPAGAATPRHTHRGPGIRRLLYGRLLAEMGDDLERIEPGQPWFETGKDPIVGMN
                     ISGGNSAFVRVMVLPIDLKGGKTSFVATTAEEAAKPRHVASRLFGETVID"
     gene            complement(2314..3537)
                     /locus_tag="VE686_08780"
     CDS             complement(2314..3537)
                     /locus_tag="VE686_08780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017264155.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008233 - peptidase activity [Evidence
                     IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Xaa-Pro peptidase family protein"
                     /protein_id="HYY84577.1"
                     /translation="MQGNGVMLQDGERADGPSLGMPFDPAKLDRYLDEAGIDVLIATS
                     KHNVRYLLGGHLHHFFAAMDAIGTSRYLPVLVYRTGRPEDAAYIAGRNEKDAIAVRAD
                     EGRPLWPPRVEPGASGTIDAMALALEHVRSFSRPPHRIGVEAAFMPWDAGHALQNAFS
                     QATLIEALRPLERLRAVKTAAELERLRLASERVVEAMLAAIAAHGPGVTKRELEATLR
                     REETARGLVFDYGLLTVGANLNRAPSDDRWNAGDILSLDSGGNLDGYIGDLCRMAVLG
                     EPDAELEDLLGEVREIQDCARRAVRAGVRGGEVVTEGEAAVARSPWAKSLNFVAHGMG
                     LVSHEAPRLMSGGPIPYAADDIEAPLEVGMVLSVETTLKHATRGFIKLEDTVAVAAEG
                     SIGFGDSGRGWNRHP"
     gene            complement(3563..>3919)
                     /locus_tag="VE686_08785"
     CDS             complement(3563..>3919)
                     /locus_tag="VE686_08785"
                     /EC_number="1.1.1.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009764644.1"
                     /note="AroE; catalyzes the conversion of shikimate to
                     3-dehydroshikimate; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="shikimate dehydrogenase"
                     /protein_id="HYY84578.1"
                     /translation="LCMRFGPDRAEVCDHVARVLPAADGLVNATPVGMASRPGLPLDP
                     DMLRPDLWVADIVYFPVETALLREARARGCRTMGGGEMAVFQAAGSFRLFAGREPSPD
                     RMLRSFAAMTGSGFGG"
BASE COUNT          652 a         1350 c         1252 g          665 t
ORIGIN      
        1 gcatcatggt gaaaggtatt ctcggcccga agaccgccaa cctcgtgttc gcgctcgcga
       61 ccgtctacat gcccgtgttc ttccgcatcg cccgctccgg ggccatggcg gaggcggggc
      121 taacctacgt cgaggcggcc cgcagcatcg gcctctcgga aggcaccatc ctgtaccgac
      181 acgtgctacg caacgtgctg cctctcatcc tcgtgcagta cgtgatcctg ttcccgctcg
      241 tcctgcagat cgagggcgcg ctcgggttcc tcggcctcgg cgtccagccg cccacgcccg
      301 actggggcgc catcctacaa cagagcaagg actacatcct gctcgcgccc tggatgtcgg
      361 ccttcccggg tcttgcgatc ctatggaccg cgctcgggct catgctggtc ggccgcagcc
      421 tccagcgccg cctcgaccgc cgctgaccaa catcggagaa agcacctgat gccgaacgcg
      481 caaccgctgt gggcctctct ttcgccggag gagcatgagt tccagtacaa tccgcagcgc
      541 gccttcccga actttcccga ccaccaggcc gagcgcgcgc cagcgaacgc ctcggcccgc
      601 gcaaatctga agtcctacgt ggacatttct tatggcgagc atccgctgcg cagggtggac
      661 gtctaccccg ccgctggtgc agcggctccg gctccggtgc acgtgttttt ccacggcggc
      721 tattggcgcg cgcaggataa ggagaacttc ggcttcgttg cccgggagct tgtggcacgc
      781 ggcgttacga cggtcatcgc caactacgag ctctgcccgg cctcaaccct cgacgccgtc
      841 gtcgactcgg cgctggcggc catcgactgg acctgccgca gcatcgccga cttcggcggt
      901 gatccgaagc gcatcagcct gtcgggccac tcggccgggg cgcatctgtg tgccgaggct
      961 ctggccaccg attggcggtc gcgcggcgtc gatcccaccc gctttcgcgg cgccgtcctg
     1021 atcagcggca tcttcgaccc ggagccgacg atccgcacca ccgtcaacgc gcagctcaac
     1081 ctcgatcccg agattgccgc gcggcacaac gtcgaggtcc gtccgcccgt ggtggactgc
     1141 ccgacttgga ttttcgcggg tgggcgcgag ccctggcagt ggctggacca gtcgtaccgc
     1201 tacgcgcatc accttcaccg gcacgggcgg gacccggaag tgcatgttct cccgggctgg
     1261 aaccacttcg acatcatcgc gcagtacatg gacgagggca gccccatcct gcgcgcggcg
     1321 ctcgcctccg ctctcggcac gcagggacgg taggatgcag cgcagctggc ggatgacggt
     1381 ctacgacctc gccgttgcgg gctcggcgac ggtggacggc ggggcgcacc ggttcttcta
     1441 cctccgtaac gggcaaatgt cggcgccttc acgcggtccg gcggcgctcg agcccgacag
     1501 cgggttcttc gcctcggaga cgacctcgtt ggagggcgag ggaacgctgt gggtctacga
     1561 ggcggcgccg ttcgagacca ccctcctcgg cggcggcgcc tcagtggtgc tgtcgcggcg
     1621 cttcgagcgc gagttcgggc cgcccctgct gcttcgcgcc gaccgcatcg aatcgcctgc
     1681 aggcgcggcg acgccgcggc acacgcatcg cgggcccggc atccggcgcc tgttgtatgg
     1741 acgtctgctg gcggagatgg gcgacgacct cgagcgcatc gagcccgggc agccatggtt
     1801 tgagaccggc aaggacccaa ttgtcggaat gaacatctcg ggcggtaaca gcgcgttcgt
     1861 gcgggtcatg gtcctgccga tcgacctcaa gggaggaaag acctctttcg tcgcgacgac
     1921 tgccgaggag gccgcaaagc cgagacacgt agcaagcagg ctcttcggcg aaaccgtcat
     1981 cgattagaac cgactcaccc gctccccgtg cttgcgcgct ggacacagcg gctgtcgcga
     2041 gcgtccgctt tgcgcccaaa gcggtcattc aggtgctcgc atttcgaccc ggaatgcaga
     2101 catccagcac gtgatgcgca acaacctaca acaggggacg agcgcggtgg agcgaagatg
     2161 gccggacgcc atacggcgcg gcgttggcgc caggggctca gccgcttgac ctagtcggcc
     2221 cgcggagggt cgcaggaaca gcgttgccct cacgcgtttg agcgcgccgc catctgttaa
     2281 agagtcggca cgctccagct gcaatgcagt caatcaggga tggcgattcc acccacgtcc
     2341 tgagtcaccg aatccgatac tcccttcagc agccacagcg acggtgtctt cgagcttgat
     2401 gaagcctcgc gttgcgtgct tgagggtggt ctcgaccgaa aggaccattc ctacttcgag
     2461 cggcgcttcg atatcatccg cagcataagg gattgggccg ccgctcatga gtcgcggcgc
     2521 ctcatggctg acaaggccca tcccgtgggc cacaaagttg agcgacttcg cccacgggga
     2581 ccgtgcgacg gcggcttctc cttcggtgac gacctcgccc cctcgcactc cggcgcgcac
     2641 cgcacggcgc gcgcagtcct gaatctcgcg aacctcgccc agaagatcct ccaactcggc
     2701 atcgggctcg ccgagaaccg ccatacggca gaggtctccg atgtagccgt cgagattgcc
     2761 tcctgaatcg agcgagagga tgtctcctgc gttccaccgg tcgtcggacg gcgccctgtt
     2821 gaggttggcg ccgaccgtga gaagcccgta gtcgaagaca aggccccgcg ccgtttcctc
     2881 gcggcgcagc gttgcctcga gttcgcgctt cgtcaccccg ggaccatgcg ccgcgatggc
     2941 cgcgagcatc gcctcgacaa cccgctcgga ggccaggcgg agccgctcca gttcagcggc
     3001 cgttttcacc gcgcgtaggc gctcaagtgg cctaagggcc tcgatgagag ttgcctgcga
     3061 gaaggcgttc tggagggcgt gacccgcatc ccaaggcatg aatgcggcct caaccccaat
     3121 ccgatgtggc ggacgagaga aggaccggac gtgctcaagc gcgagtgcca ttgcgtcgat
     3181 cgtccccgag gcgcccggtt cgaccctcgg tggccacagc ggccgccctt cgtccgctcg
     3241 gacggcaatg gcgtctttct cattccggcc cgcgatgtag gcggcgtcct cgggccggcc
     3301 cgtccgatag accaggaccg gcaagtagcg gctggtcccg attgcgtcca tcgcggcgaa
     3361 gaagtggtgc aggtgtccgc ccaggaggta gcggacgttg tgcttcgagg tggctatcag
     3421 gacatcaatg ccagcctcgt cgagatagcg gtcgagcttc gccggatcga acggcatccc
     3481 gagcgatggt ccgtcggctc gttcgccatc ctgcagcatc acgccgttcc cctgcatcgt
     3541 cgctcgcaac gacgagctaa tcttatccgc cgaagccgct gccagtcata gcagcgaaag
     3601 aacgcagcat gcgatctgga cttggctccc tcccggcgaa caggcgaaag gagccggcgg
     3661 cctggaagac tgccatttcg cctcctccca ttgtgcggca gcccctggct cgtgcttccc
     3721 gcaggagtgc cgtctcgacc ggaaaataga cgatgtccgc gacccaaaga tccggccgca
     3781 gcatgtccgg atcgagaggg aggcccggac ggctcgccat gccaacgggc gttgcattca
     3841 cgaggccgtc ggcagccggg agtaccctcg ctacatggtc gcacacttcg gcgcggtcag
     3901 ggccgaagcg catacaaag
//
LOCUS       DASQWN010000468         2852 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_436267, whole genome shotgun sequence.
ACCESSION   DASQWN010000468 DASQWN010000000
VERSION     DASQWN010000468.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2852)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2852)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2852
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_436267"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            354..575
                     /locus_tag="VE686_08790"
     CDS             354..575
                     /locus_tag="VE686_08790"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY84579.1"
                     /translation="MRFVLALVAAVGVFVMVGMLVAPHQPELRAWYLNNACPLLDRLS
                     DDICAAVRREAPGKSAEVPLDRRIGNSIG"
     gene            827..1090
                     /locus_tag="VE686_08795"
     CDS             827..1090
                     /locus_tag="VE686_08795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015687671.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY84580.1"
                     /translation="MKHAIAVALLAVSTSAFAQTSTTTTVSPGATSSETYFVVQEPST
                     KRCTITTSKPAGTTTTVIGGDGTVYKSRTEAETAMKKVTTCTH"
     gene            complement(1222..1572)
                     /locus_tag="VE686_08800"
     CDS             complement(1222..1572)
                     /locus_tag="VE686_08800"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY84581.1"
                     /translation="MTLSSQGSGVIAFTCRRQRASVVIGLNKTRFRTPVGASTVVRIA
                     IGDHRAETAAEVVSEESAHVDEGVTRDLLARTHDGAVFSFTLPFVDGGDVTLVFRPVE
                     STKALGPLKAACNI"
     gene            complement(1905..2447)
                     /locus_tag="VE686_08805"
     CDS             complement(1905..2447)
                     /locus_tag="VE686_08805"
                     /EC_number="2.3.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018964006.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016746 - acyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0071972 - peptidoglycan L,D-transpeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0018104 - peptidoglycan-protein
                     cross-linking [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="L,D-transpeptidase"
                     /protein_id="HYY84582.1"
                     /translation="MDGERFPIAAFDYGQLDPTFLRQEVAFAGGEAPGTIIVDPNARF
                     LYRVEAPGRATRYGVGTGREGFSWSGQATVHIKRDWPDWVPPREMVARDPEIRSQLVS
                     MQRGLGVPGGLKSPLGARAMYLFAGRQDTGYRIHGTTEPETIGTHVSSGCIRMVNHDV
                     IHLYHRTPNGAKVVILPATA"
BASE COUNT          499 a          928 c          940 g          485 t
ORIGIN      
        1 ggtcgagcgt tggcgctccc gcgacggcgc gccgatagcg cctcttcccg acgatcccct
       61 gccaggacgc gcagcaagcg ggatcgggcg ctgttgagct gctacgaccc tcggccagcc
      121 gcgcggtcct gacgaggccc gcaagggagc gccgggaccg gaacctcgcg gacatgatga
      181 gcttgtgtac aagcggaccg gaatcgctgc ggccatcgtt catgccacga ttggagccgt
      241 tgtgctgctt ctgctcttga ggctcgcgga cagggctggc tggccaggtc gctggcgccc
      301 gcgctggtag acgcgattag gtgagcgaga gctgcccgga tgaggagtag agcatgagat
      361 tcgttttggc gcttgtggcc gccgttggcg tgtttgtgat ggttgggatg cttgtagcgc
      421 cccatcagcc cgagctgcgg gcctggtacc tcaacaatgc ttgtccgctc ttggaccgac
      481 tgagcgacga catctgcgct gccgtgcgac gcgaagcccc aggaaagagc gcggaagtcc
      541 cgctcgatcg gcgcatcggc aacagcattg gttgacctcg cttgcgccaa cgcgcggctg
      601 cctgatcgct agcgtgaacc catgttgctg ctggactggg ttcgaaagat gctttcacca
      661 tccggcgagt caaacgcctg ccgcccgatg ccggtcgacc gggccgccgt cgtgaaccct
      721 cgctgaatgc gagggagagg cgccgttcag tgacatcgga tcagggtgtc cttgcgccgg
      781 cggcataggt accgctggtg cgccctaaac cggaggaacg atagacgtga aacacgcaat
      841 cgcagtcgct ttgctcgccg tcagcacctc ggctttcgcc cagacgagca ccaccacgac
      901 tgtctcgccc ggcgcgacct cgtcggagac ctatttcgtc gtgcaggagc cctcgacgaa
      961 gcggtgcacc ataaccacct cgaagccggc aggcacgacg acgacggtca ttggcggcga
     1021 cggcacggtc tacaagtcgc ggactgaggc cgagacggcg atgaagaagg tgacgacctg
     1081 cacgcactaa cgatcggcct gcctcgcagg gtgctggagg gcggcttcgg ccgcccttta
     1141 tgctccggcc acgccactgc ccggtctaag ctaagttcgt gaggcacaaa cggcggcacc
     1201 cagccggtcg ggagtgtgtc cctagatgtt gcaggcggcc ttcagggggc cgagagcctt
     1261 ggtgctttcg acaggtcgga aaacgagcgt gacgtcgcca ccatccacga acggcagtgt
     1321 gaaactgaag acagctccgt cgtgcgtccg cgcgagcagg tcccgagtga cgccttcatc
     1381 gacatgcgcg ctctcttcag aaaccacctc ggccgcggtc tctgctcggt gatcgccaat
     1441 tgcgatccgg acaaccgtac tggcgcctac aggcgtcctg aagcgcgtct tgttcaggcc
     1501 gatgacaacg cttgcgcgct gccgacgaca cgtgaaggcg atcactccgg agccctggct
     1561 gctgagggtc atggctacgt gctcggcagc gacgccttgt ccagccgcgt ccactatcca
     1621 cgagccgatg gcgagcgcag tcctccccgc atcggtttgg acgaggacga tggcggcgac
     1681 ggcagcgggc agccaaggca acatgacgga agcttaccgt agtcggaaag cggcaactgc
     1741 cgcgcgggtc ggtcgagact gtatcctccc gccacgttgc cgctgccgtc aaccgcccta
     1801 tctccgagcg cctcttccgt ggcgccgcgg ccagggagat ggcacgaacg gaaccgatcg
     1861 atgttaaagc cggggcaagt cgcccgggga cgcccgcggc ggactcaggc cgttgcgggg
     1921 agaattacta ccttggcgcc atttggcgtc cggtgataaa ggtggatcac gtcgtggttg
     1981 accattcgga tgcatccgga cgacacgtgt gttccgatgg tctccggttc agtcgttcca
     2041 tggattcggt agcccgtgtc ctgccggccg gcgaagagat acatggcacg cgcgccgagg
     2101 ggactcttca ggcctcccgg gacaccaagc ccgcgttgca tggacacgag ttgggaccgg
     2161 atctccgggt cgcgagccac catctcccgc ggcggcaccc aatcgggcca atctcgcttg
     2221 atgtggacgg tggcttgacc ggaccaagaa aagccctccc gtccagtgcc caccccgtac
     2281 cgcgttgccc gtcctggcgc ctcgacccgg taaagaaagc gcgcattcgg atcgacgatt
     2341 atcgtccccg gcgcctcgcc tcctgcgaag gcgacctcct ggcgcaggaa cgtcggatcg
     2401 agctggccat agtcgaacgc ggcgatagga aagcgctcgc cgtccatcgc tccgtagacg
     2461 gaagcgtgat cagcgcgtgc cagcgttcga tcggtaggcc gtcgatcgct gaagcgggaa
     2521 gtggacccgc cctcgacaaa tggcgagacg cggctgccgc agcccgtcaa cgtgacggct
     2581 gacgccgcgg cagcgcccat gatcagcaga cggcgagtgg agtccgacat ctcaggcgtt
     2641 ccgcggtggt gccggtcacc ttgggacgac atcggtttag aatgtgttca ccatgcgcga
     2701 tcgtatgcgc aagcgctgac gcgagcgcct ccgcggcgcc acactgcccg gcggtcttgc
     2761 cgccaggctg ccgctcagct tgggcgcctg tggtctgagc accccgatgg atgcgggagc
     2821 gccggcaagc taggccatcc cccccgccac cg
//
LOCUS       DASQWN010000469         4545 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_337407, whole genome shotgun sequence.
ACCESSION   DASQWN010000469 DASQWN010000000
VERSION     DASQWN010000469.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 4545)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4545)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4545
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_337407"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..255
                     /locus_tag="VE686_08810"
     CDS             <1..255
                     /locus_tag="VE686_08810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010686322.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HYY84583.1"
                     /translation="GVINVTRGLARALAPDVRVNAVAPGLVQTPWTNPWSDERKQGTI
                     DRTMLRRLATPHDIAETMLFLAAGAAYITGETIVVDGGAA"
     gene            281..1162
                     /locus_tag="VE686_08815"
     CDS             281..1162
                     /locus_tag="VE686_08815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015685376.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-keto-5-aminohexanoate cleavage protein"
                     /protein_id="HYY84584.1"
                     /translation="MAAKTVITCALTGSFDTRSKNPAVPVTPEEIANSALEAAKAGAA
                     VVHVHVRNPATAQPSMELEHYRETVERIREKNGDVLINLTTGPGGRFVPGKEDPAIPG
                     PGTSLRTPAVRLRHVEQIKPPICTLDVATLNFGEHVFLNTPAHLREMADRAKAAGAKP
                     EVEVFDLGHIELAKRLIADGHIAEPPLFQICLGIPWGAPATPETMIQMRDRLPKNAIW
                     SGFGISKMQFPMVALAATLGGNVRVGLEDNLYVGRGELAPSNAALVDKAVKILDLLDR
                     PIATPAEAREIFALGRS"
     gene            1195..2415
                     /locus_tag="VE686_08820"
     CDS             1195..2415
                     /locus_tag="VE686_08820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018452962.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HYY84585.1"
                     /translation="MRHAFRALVAAGLAAAAAAGQAQPADKVSDGVVKFGLLLDMSSL
                     YADITGQGSVTAARMAIEDYGAKVLGKPVEVIFADHQNKPDIAASLAREWFDTQKVDA
                     ILDVAASATALAAVEIAKGKNKIVVMSGPGAARLTNEACSPVSVHYAYDTYSLAHTTG
                     GATVKQGGDTWFFLTADYAFGHELERDASAVVTVNGGKVVGSVRAPLNSSDFSSFLLQ
                     AQASKAKVIGLANAGGDTTNAIKQAAEFGIVKGGQKLAGLLVYINDVHSLGLERAQGM
                     LLTEGFYWDLNDETRAWSKRFLDRHGKMPNMSQAGLYSSVMHYLKAVDAAGTDETGPV
                     MAKMRELPINDVFAKNGRIREDGRMVHDMYLFEVKTPAESKGPWDYYKLLATVPGEEA
                     FQPLAKSRCPLVKK"
     gene            2424..3842
                     /locus_tag="VE686_08825"
     CDS             2424..3842
                     /locus_tag="VE686_08825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012332783.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M20/M25/M40 family metallo-hydrolase"
                     /protein_id="HYY84586.1"
                     /translation="MQGSRDGAVARAQEAFDSGTYLRALEALVAVRTESQNPERGAEL
                     RRYCAEVLGPMVESLGCTVQVLDNPLPERGPVLVGRRIEDPALPTVLVYGHGDVVHGM
                     PERWRAGLDPFRVTVEGERLYGRGTADNKGQHLIALESLRAVLAERESLGFNVTFLVE
                     TGEEVGSPGLRAFLQRHRELCAADVFIGLDGPRKNKAIPELSLGARGGLTFDLVLDLR
                     EGSHHSGHWGGVLADPGFIMAHALASIVSQDGRILVPGWRPETVPESVRRACATVEFE
                     ESPDLPQADPAWGEPGMSKAERIFAWTSVIVLASVTGEPRAPTNAVAGSARARLQVRH
                     TVDLAADEIVPNLRRHLDANGFAAIEIVPVTDQDPFAASRTDPDDPWVRLVVESLTRT
                     AGRGPNVVPNGAGSNPSEIFKQELGVPIMWLPQSYAGCGQHGPDEHALAPLYRDGLRL
                     MAGVWWDIGEHGAAARRAARRA"
     gene            3896..>4545
                     /locus_tag="VE686_08830"
     CDS             3896..>4545
                     /locus_tag="VE686_08830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019402428.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HYY84587.1"
                     /translation="MRSRGLFAGLIVLAALAAAPAAADKRSDTLRFAYDQSVENIDPY
                     FNNVRLGVILRHQIWDTLIYRDPDTGQYKPHLATAWRVVDDRTLEFDLRRGVKFHDGQ
                     EFTADDVVYTLNFVSNPANKAVTQQYVSWIERAEKLDPYKVRIVTKQPTPSALEYLSS
                     PVMIHPHQHYRAVGPKGMNEKPIGSGPYRVVQHVLGKSIALERNPDYFGPPAKIARV"
BASE COUNT          730 a         1700 c         1497 g          618 t
ORIGIN      
        1 ggggtcatca acgtcacccg cggcctcgcg cgggcgcttg cgccggacgt gcgcgtcaac
       61 gccgtcgcgc ccggcctcgt gcagacgccg tggaccaatc catggtccga cgagcgcaag
      121 cagggcacga tcgaccggac catgctgcgc cgcctggcaa cgccccacga catcgccgag
      181 accatgctct tcctcgccgc cggcgcggcc tacatcacgg gcgagaccat cgtcgtcgac
      241 ggcggcgccg cctgagttct tcacgcacaa ggatcacgcc atggctgcga agaccgtcat
      301 tacctgcgcg ctcacgggct ccttcgacac ccgctcgaag aaccccgcgg tcccggtcac
      361 gccggaggag atcgccaact cggcgctcga ggccgcgaag gccggcgccg ccgtcgtcca
      421 cgtccacgtc cgcaaccccg cgaccgcgca gccgagcatg gagctcgagc actaccgcga
      481 aacggtcgag cgcatccgcg agaagaatgg tgatgtcctc atcaacctga cgaccggccc
      541 cgggggccgg ttcgtgcccg gcaaggagga cccggcgatc cccggcccgg gcacgagcct
      601 gcgcacgccg gcggtgcgcc tgcgccacgt cgagcagatc aagccgccga tctgcacgct
      661 cgacgtcgcg acgctgaact tcggcgagca cgtgttcctc aacacccccg cccacctgcg
      721 cgagatggcc gatcgcgcca aggcggccgg cgcgaagccg gaggtcgagg tcttcgacct
      781 cggccacatc gagctggcga agcgcctcat cgccgacggc catatcgccg agccgcccct
      841 gttccagatc tgcctcggca tcccctgggg cgctcctgcg acgcccgaga ccatgatcca
      901 gatgcgcgac cggctgccga agaacgcgat ctggtcgggc ttcggcatct cgaagatgca
      961 gttccccatg gtggcgctcg cggcgacgct cggcggcaac gtgcgcgtcg gcctcgagga
     1021 caacctctac gtcggccgcg gcgagctcgc cccgagcaac gccgccctcg tcgacaaggc
     1081 cgtgaagatc ctcgacctcc tcgaccgccc gatcgccacg cccgccgaag cccgcgagat
     1141 cttcgccctc gggcgcagct gatcgtcgag gaccacgaac atccggagga tctgatgaga
     1201 cacgcatttc gcgcgcttgt cgcggccggg ctcgccgccg ctgccgccgc cgggcaggcg
     1261 cagccggccg acaaggtttc agacggggtc gtgaagttcg gcctgctgct cgacatgtcg
     1321 agcctgtacg ccgacatcac cggccagggc agcgtgacgg cggcccgcat ggcgatcgag
     1381 gactacgggg ccaaggtgct cggcaagccc gtcgaggtga tcttcgccga ccaccagaac
     1441 aagcccgaca tcgccgcgag cctggcgcgc gagtggttcg atacgcagaa ggtcgacgcc
     1501 atcctggacg tcgccgcatc cgcgacggcg ctcgcggcgg tcgagatcgc caagggcaag
     1561 aacaagatcg tcgtgatgag cggcccgggc gcggcgcggc tcaccaacga ggcctgctcg
     1621 cccgtctcgg tccactacgc ctacgacacc tactcgctcg cccacaccac aggcggcgcg
     1681 accgtgaagc agggcggcga cacctggttc ttcctcaccg ccgactacgc cttcggccac
     1741 gagctcgagc gcgacgcctc cgcggtcgtg accgtcaacg gcggcaaggt cgtcggctcg
     1801 gtgcgcgcgc cgctcaacag ctcggacttc tcgtccttcc tgttgcaggc gcaagcctcg
     1861 aaggcgaagg tgatcgggct cgccaacgcc ggcggcgaca ccaccaacgc catcaagcag
     1921 gcggccgagt tcggcattgt caagggcggg cagaagctcg cggggctcct cgtctacatc
     1981 aacgacgtgc acagcctcgg cctcgagcgg gcgcagggca tgctgctcac ggaggggttc
     2041 tactgggacc tcaacgacga gacgcgggcg tggtcgaagc gcttcctcga ccgtcacggc
     2101 aagatgccga acatgtcgca agcgggcctg tactcgagcg tcatgcacta cctgaaagcc
     2161 gtcgacgcgg ccggcaccga cgagaccggg cccgtgatgg ccaagatgcg cgagctgccc
     2221 atcaacgacg tcttcgccaa gaacggccgc atccgcgagg acggccgcat ggtgcacgac
     2281 atgtacctct tcgaggtcaa gacgccggcc gagtcgaagg ggccttggga ctactacaag
     2341 ctcctcgcca ccgtgccggg cgaggaggcg ttccagccgc tcgcgaagtc gcgctgcccc
     2401 ctggtgaaga agtgaggccg gcgatgcagg gcagccggga cggggcggtc gcgcgggcgc
     2461 aggaggcctt cgactcgggc acctacctcc gagccctcga ggccctcgtg gcagtgcgca
     2521 ccgaaagcca gaacccggag cgcggggcgg agcttcgccg ctactgcgcc gaggtcctgg
     2581 gacccatggt ggagagcctc ggctgcaccg tgcaggtgct cgacaatccg ctgccggagc
     2641 gcgggcccgt gctcgtcggg cgccgcatcg aggatcccgc gctgccgacc gtcctcgtct
     2701 acggccacgg cgacgtggtg cacggcatgc cggagcgctg gcgcgccggg ctcgacccct
     2761 tccgcgtcac cgtcgagggc gagcgcctct acggccgcgg cacggcggac aacaagggcc
     2821 agcacctcat cgccctcgag tccctgcggg ccgtcctcgc cgagcgcgag tcgctcggct
     2881 tcaacgtcac cttcctggtc gagacgggcg aggaagtcgg ctcgcccggc ctgcgcgctt
     2941 tcctgcagcg gcatcgggag ctgtgcgccg ccgacgtgtt catcggcctc gacggcccgc
     3001 gcaagaacaa ggcgatcccg gagctctcgc tcggcgcccg cggcggcctc accttcgacc
     3061 tcgtcctcga cctgcgcgag ggcagccacc actcgggcca ctggggcggc gtgctggccg
     3121 accccggatt catcatggcg cacgcgctcg cgtcgatcgt gtcgcaggac gggcgcatcc
     3181 tcgtgcccgg ctggcggccg gagaccgtgc ccgagtccgt gcgccgcgcc tgcgcgaccg
     3241 tcgagttcga ggagagcccc gacctgccgc aggccgatcc cgcctggggc gagcccggca
     3301 tgtcgaaggc cgagcgcatc ttcgcctgga cgagcgtgat cgtgctcgcg agcgtcacgg
     3361 gagagccgcg ggccccgacg aacgccgtcg cgggctccgc ccgggcgcgg ctgcaggtgc
     3421 gccacaccgt cgaccttgcc gccgacgaga tcgtcccgaa cctgcgtcgc cacctcgacg
     3481 ccaacggctt tgcggcgatc gagatcgtgc cggtcaccga ccaggacccc tttgcggcct
     3541 cgcggaccga ccccgacgat ccgtgggtcc gcctcgtcgt cgagtcgctg acgcggaccg
     3601 ccgggcgcgg ccccaacgtg gttccgaacg gcgccggctc gaacccgtcg gagatcttca
     3661 agcaggagct cggcgtgccc atcatgtggc tgccgcagtc ctacgccggg tgcggccagc
     3721 acggccccga cgagcacgcc ctcgcgcccc tctaccgcga cggcctgcgc ctcatggccg
     3781 gcgtgtggtg ggacatcggc gagcacggcg ccgcagcacg gagggcagcc cgtcgcgctt
     3841 gacccccggg ctcgaccgcg cccactctcg ggccgggatg ctcggaggac gtggcatgcg
     3901 cagtcgaggg ctcttcgccg gcttgatcgt tctggcggcg ctcgccgcgg caccggccgc
     3961 cgccgacaag cgcagcgaca ccctgcgctt cgcctatgac cagtcggtcg agaacatcga
     4021 tccctacttc aacaacgtcc gcctcggcgt cattctcagg caccagatct gggacacgct
     4081 gatctaccgc gatcccgaca cggggcagta caagccgcac ctcgcgacgg cttggcgcgt
     4141 cgtcgacgac aggacgctcg agttcgacct gcgccgcggc gtgaaattcc acgacggcca
     4201 ggagttcacg gccgacgacg tcgtctacac cctgaacttc gtctcgaacc ccgccaacaa
     4261 ggccgtcacg cagcagtacg tgagctggat cgagcgcgcc gagaagctcg acccctacaa
     4321 ggtccgcatc gtcaccaagc agccgacgcc ctccgccctc gagtacctct cgagcccggt
     4381 gatgatccat ccccaccagc actaccgcgc ggtcggcccc aagggcatga acgagaagcc
     4441 gatcggctcg ggcccctacc gcgtcgtgca gcacgttctc ggcaagtcga tcgcgctcga
     4501 gcgcaacccg gactatttcg gcccgcccgc caagatcgcc cgggt
//
LOCUS       DASQWN010000470         3637 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_833264, whole genome shotgun sequence.
ACCESSION   DASQWN010000470 DASQWN010000000
VERSION     DASQWN010000470.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 3637)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3637)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3637
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_833264"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..290)
                     /locus_tag="VE686_08835"
     CDS             complement(<1..290)
                     /locus_tag="VE686_08835"
                     /inference="COORDINATES: protein motif:HMM:NF018979.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tripartite tricarboxylate transporter TctB
                     family protein"
                     /protein_id="HYY84588.1"
                     /translation="MTPHPEQGEHTVSNRAMELVVSGLFIALSILVMYDNWRIGARWM
                     EDGPQAGYFPFYIGAIMLIASAVTFATNLAATAAGSASFVDRSQLKQVLQVLV"
     gene            complement(370..1314)
                     /locus_tag="VE686_08840"
     CDS             complement(370..1314)
                     /locus_tag="VE686_08840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006610120.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tripartite tricarboxylate transporter
                     substrate-binding protein"
                     /protein_id="HYY84589.1"
                     /translation="MPADAAWQPTRPVEIIVPAGTGGGADQMARVIQGIVQKHSLMAQ
                     PLVVINKAGGAGAEGFLDVKGSARNPHKIIITLSNLFTTPLATGVPFKWEDMTPVAML
                     ALDEFVLWVNAKSPHKTAKDFVAAVKAGQPNQFKMGGTGSKQEDQIITAAIEQTTGVK
                     MTYIPYKGGGDVAAQLVGGHVDSSVNNPIEAVAQWRAGELRPLCVFDSKRIELKEKVT
                     ADMGWADIPTCKEEGLDIEYLMLRGFFTTSGATPDQVAFYVDLFKKVRETPDWKDFME
                     KGAFNTTFMAGDEYKAWLKKAADIHRTLMEKAGFLAKS"
     gene            1710..2693
                     /locus_tag="VE686_08845"
     CDS             1710..2693
                     /locus_tag="VE686_08845"
                     /inference="COORDINATES: protein motif:HMM:NF015366.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0042597 - periplasmic space [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tripartite tricarboxylate transporter substrate
                     binding protein"
                     /protein_id="HYY84590.1"
                     /translation="MTRRSVLAGSAALALVGLAAAPSAAQPAFPSRTIRVIVPFPAGG
                     TTDMLARLFAQRLTEALGQSVIVENMGGAGGSVGADVVAKADPDGHTLLFHNLTFSST
                     TASLQYAGRAKHSLADFAPISMAANVPMLVVANPSVPVRDLKEFAAYAKDSKTPLFYG
                     STGPGSVMNLASEVFKRDAGINMDHVPFRGAAPLVQELVAGRIQFGGDQLSTALPHVK
                     GGALKPLATLAEKRTTALPDVPTVRELGFPNMELRGWNGFFAPAKTPEAIIARLHQEI
                     VKAAQHPEVQRRMTEVGAEPVGSSPAEFGQAVNEQIEKVRPLVSELKLIVQ"
     gene            complement(2847..>3637)
                     /locus_tag="VE686_08850"
     CDS             complement(2847..>3637)
                     /locus_tag="VE686_08850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018640885.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051287 - NAD binding [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="NAD(P)-dependent oxidoreductase"
                     /protein_id="HYY84591.1"
                     /translation="KQAPDLVAFLRCAVDIRNVDVKAASRNGILVTRATPGFAASVAE
                     MALGFMVDLARHVSASVLDYRAGREPEPRMGRQLKGSVLGIIGYGVIAQHLAPIAVAL
                     GMEVLVADPYKTVADAGVRQVAFEELLQSADFVVCLAVATEETESLMNAGAFGRMKRG
                     AAFINLSRGNLVDEAALEAALDEGRIAGAAMDVGRAQDQKPTLRLARRPDVIATPHTA
                     GLTPSAVEHQAFDTVEQVRELLAGRLPPNAVNPQQASRLSRLQR"
BASE COUNT          559 a         1263 c         1202 g          613 t
ORIGIN      
        1 acgagcacct gaagcacctg cttcagctgg cttcgatcga cgaaggaagc cgatccggcc
       61 gccgtcgcgg caaggttcgt ggcgaaggtc accgcgctcg cgatgagcat gatcgcgccg
      121 atgtagaacg ggaagtagcc cgcctgcggg ccgtcctcca tccagcgcgc gccgatgcgc
      181 cagttatcgt acatgacgag gatcgacagg gcgatgaaga gccccgagac cacgagctcc
      241 atggctcggt tggagacggt atgctcgcct tgttccgggt ggggtgtcat ctcgggccgg
      301 gttcgctgac ggggttcgag tgagcgccga cgatccggcg ccctcgcgcc ggaccgccgc
      361 ttgagagcgt caggatttcg cgaggaagcc cgccttttcc atcagcgtcc ggtggatgtc
      421 ggccgccttc ttgagccagg ccttgtactc gtcgcctgcc atgaacgtgg tgttgaaggc
      481 gcccttctcc atgaagtcct tccagtccgg cgtctcacgg accttcttga acaggtcgac
      541 gtagaacgcg acctggtcgg gcgtggcgcc ggaggtcgtg aagaacccgc gcagcatcag
      601 gtactcgatg tcgagaccct cctccttgca ggtcgggatg tcggcccagc ccatgtcggc
      661 cgtgaccttc tccttcagct cgatgcgctt cgagtcgaac acgcaaagcg ggcgaagctc
      721 gccggcgcgc cactgggcga ccgcctcgat cgggttgttg acgctcgagt cgacgtggcc
      781 gccgacgagc tgggccgcga cgtcgccgcc gcccttgtag gggatgtagg tcatcttcac
      841 gccggtggtc tgctcgatgg cggcggtgat gatctggtct tcctgcttgg agcccgtgcc
      901 gcccatcttg aactggttcg gctgccccgc tttcacggct gcgacgaagt ctttggccgt
      961 cttgtgcggc gacttggcat tcacccaaag cacgaactcg tcgagcgcga gcatcgccac
     1021 cggcgtcatg tcctcccact tgaacggcac gccggtggcg agcggtgtcg tgaacaggtt
     1081 cgagagggtg atgatgatct tgtgcgggtt gcgcgccgaa cccttcacgt cgaggaagcc
     1141 ttcggccccc gccccgcccg ccttgttgat aacgacaagc ggctgcgcca tcaggctgtg
     1201 cttctgcacg atgccctgga tgacgcgggc catctggtcg gcgccgccgc ccgtcccggc
     1261 cggaacgatg atctcgacgg gcctcgtcgg ctgccaggca gcatcggcgg gcatgctccc
     1321 gtagccgatg gcgaccgcgc cgaccgccgc gagagcgcgc gaaatggctg tcttgggatg
     1381 gatcacaggc gttacctccg tgctggcttg tcttcacggc cttcggccgc tgatgccatg
     1441 cgttgtggcc gtagtatatg gcataccaga cttcgcgcaa ccgcagttcc gagtgtagcg
     1501 acagcagcgc cgggctgtcc ttggcgcgcc gaatcggtcg cccaccgccc tgaatcaagg
     1561 atattgcgtt tgctcgcaca ggtgtggctt acgtctctcg aggcccgcct gatcgcgtcg
     1621 cacgcgcccg ggcggcacgg gcgagcgcgc ctgctcaccg caacgaaaat gccctggaga
     1681 ggaaagcaat gcacgagaag attcggtttt tgacgcgtcg cagcgtattg gccggcagcg
     1741 ccgcgctggc cctcgtaggg ctcgctgctg cgccgagcgc cgctcagccc gccttcccct
     1801 cgcgcacgat ccgggtgatc gtccccttcc cggccggcgg cacgaccgac atgctggcgc
     1861 gcctcttcgc gcagcgcctg acggaagccc tcggccagtc ggtcatcgtc gagaacatgg
     1921 gcggcgccgg cggctcggtc ggtgcggacg tcgtcgccaa ggcggacccc gacggtcaca
     1981 ccctcctgtt ccacaacctg accttctcgt cgacgacggc gtcgctccag tacgccggcc
     2041 gcgccaagca cagcctggcc gacttcgcgc ccatctcgat ggcagcgaac gttcccatgc
     2101 tggtcgtcgc gaacccctcc gtcccggtcc gcgacctcaa ggaattcgcc gcctacgcca
     2161 aggacagcaa gacacccctt ttctacggct cgacggggcc tgggagcgtg atgaacctcg
     2221 cctccgaggt cttcaagcgc gacgctggca tcaacatgga ccacgtgccc ttccgcggcg
     2281 ccgcgccgct cgtgcaggag ctcgtggccg ggcgaatcca gttcggcggc gatcagctct
     2341 cgacggcgct gccccacgtc aagggcggcg ccctcaagcc gctggcgacc cttgccgaga
     2401 agcgtacgac ggccctgccc gatgtcccga ccgtacgcga gctcgggttc cccaacatgg
     2461 agctgagggg ctggaacggg ttcttcgcgc cggcgaagac gcccgaagcg atcattgccc
     2521 gcctgcacca ggagatcgtg aaggcggccc agcatcccga ggtgcagcgc cgcatgacgg
     2581 aggtcggagc agagccggtc ggctcctccc ccgccgagtt cggccaggcc gtcaacgagc
     2641 agatcgaaaa ggtccgcccg ctcgtgtcag agctgaagct catcgtgcag tagcgccact
     2701 ctgtcccgag ggagtaaggg ggcggtgccg gccagtccgc gggcctcctc aagcgggcga
     2761 cgcacgcatg ccccctcacg ccccctcgct cggctcgggc ctccggcccg agtcccgccc
     2821 tctcccgttt gggagactgc cgcgcatcag cgctgaaggc gcgacaggcg acttgcctgc
     2881 tgcggattga cggcattcgg cggcaggcgg cccgccagga gttccctcac ctgctcgacc
     2941 gtgtcgaagg cctggtgctc gacggcgctc ggcgtgaggc cagccgtgtg cggcgtggcg
     3001 atcacgtccg ggcggcgggc gagacgtagc gtcggcttct gatcctgcgc gcggccgacg
     3061 tccatggcgg ccccggcgat gcggccctca tcgagcgctg cttcgagcgc cgcctcgtcc
     3121 accaggtttc cgcgcgacag attaatgaac gccgcaccgc gcttcatgcg gccgaaggcg
     3181 cccgcgttca tcaggctctc ggtctcttcc gtggccaccg caagacagac cacgaagtcc
     3241 gcgctctgca agagctcttc gaaggcgacc tggcgcacgc ccgcgtccgc aaccgtcttg
     3301 taggggtccg ccaccagcac ctccatgccg agtgccacgg cgatcggcgc aaggtgctgc
     3361 gcgatgacgc cgtagccgat gatgccgaga acggagccct tgagctgccg gcccatccgt
     3421 ggctcgggct cccgaccggc gcggtagtcg aggaccgaag ccgaaacgtg gcgcgcgagg
     3481 tcgaccatga agccgagcgc catctcggca accgatgcgg cgaacccggg cgtcgcccgc
     3541 gtgacgagga tgccgttgcg gctcgccgcc ttgacgtcga cgttgcggat gtccaccgcg
     3601 cagcgcagga aggcgacgag gtcaggtgcc tgcttga
//
LOCUS       DASQWN010000471         4861 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_138903, whole genome shotgun sequence.
ACCESSION   DASQWN010000471 DASQWN010000000
VERSION     DASQWN010000471.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 4861)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4861)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4861
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_138903"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..511
                     /locus_tag="VE686_08855"
     CDS             <1..511
                     /locus_tag="VE686_08855"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012333714.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HYY84592.1"
                     /translation="GHSTRFLAQAAVDGGLATDILCIDPAPRAPIDALPVRHVASLLR
                     DADPAIVASLRAGDVLFIDSSHIAMPGTDVDRLFLDVLPRLPAGVLVHVHDIFLPDPY
                     PPEWAWRGYNEQLLVAALLGGGRYELVWSSRWVTMRRPELVPRRLLGPALPPGAYESS
                     LWLKVLHGN"
     gene            637..768
                     /locus_tag="VE686_08860"
     CDS             637..768
                     /locus_tag="VE686_08860"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY84593.1"
                     /translation="MSFVHRVVDSLAQVVRELTDSYHPERHYMRGPGPKWRERHGAI"
     gene            complement(802..1548)
                     /locus_tag="VE686_08865"
     CDS             complement(802..1548)
                     /locus_tag="VE686_08865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007592336.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HYY84594.1"
                     /translation="MNQIDLNGHVAIVTGGAQGIGQSVVERFAASGATVEIWDLDGDL
                     AAETAAEIGETVHARGVDVTDAEAVMAAAKACEGAHGPIDILVTSAGIAGPNKKTWEY
                     PLDAWDRIMKINVDGTMLCCRAVIPSMIAQGYGRIVTVASVAGKEGNPNAAPYSASKA
                     AVIALTKSLGKELATLDIAVNTITPAAARTRIFDQMSQEHIDFMLSKIPRNRFVEPRE
                     IAAMVAWLCSAENSFTTGAVFDLSGGRATY"
     gene            complement(1678..2718)
                     /locus_tag="VE686_08870"
     CDS             complement(1678..2718)
                     /locus_tag="VE686_08870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009763145.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HYY84595.1"
                     /translation="MTDHIETDVVIIGAGPVGLFAVFELGLLDIKAHLIDIMPKVGGQ
                     CAELYPEKPIYDIPGFPVVTGQGLVDNLMAQIEPFHPTFHLNEMVESMETLGTGDAPK
                     FQVRTDGGTTFTCKSILIAAGGGSFQPKKPPIPGIEGYEGTGVHYAVRQMERFRGKRV
                     LIVGGGDSALDWTVNLQPLAKRLTLLHRRDAFRAAPDSVNKMRALVAGNAMDFALGQV
                     TGLKGPAPVLEAAEVKRDDGSVVDIACDVMLPFFGLTMKLGPIADWGLNLHENLIPVD
                     TEKFETSVPGIFAVGDINHYPGKLKLILSGFHEAALAAQKVHRYVFPEKKLLFQYTTS
                     STSLQKKLGVVA"
     gene            complement(2786..3100)
                     /locus_tag="VE686_08875"
     CDS             complement(2786..3100)
                     /locus_tag="VE686_08875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009763146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2Fe-2S iron-sulfur cluster-binding protein"
                     /protein_id="HYY84596.1"
                     /translation="MGVIHVIDRAGERHTLEAVEGWRVMEIIREWGLPIEGLCGGACE
                     CATCHVFVAPEWVERLHPASDEEESQLDTVPLTQGNSRLSCQILYAPELDGLEVSLAP
                     VG"
     gene            complement(3192..4043)
                     /locus_tag="VE686_08880"
     CDS             complement(3192..4043)
                     /locus_tag="VE686_08880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012331860.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UPF0280 family protein"
                     /protein_id="HYY84597.1"
                     /translation="MERPRIQALAGDRLHLSHGPIDVVLRAWGPAAELRRAYDAVAER
                     FGTVLGELVGELAQLRRPAWDGPCVEGAVARRMVAAVRPFADTFITPMAAVAGSVADE
                     LLAAMLKAAALPKAFVNDGGDIAVHVAPGERLTIGVAGDFSGGAIPALNGALTVCAED
                     GIGGVATSGFNGRSFSMGIADAVTVVATTAAGADAAATLVANAVTLVSPAIQRCPARD
                     LDPDSDLGDRLVTTGVGPLSPAEIAEALERGAAEARRFLDRGLMRGAALMLRGEAVTV
                     GAVPALT"
     gene            complement(4049..4528)
                     /locus_tag="VE686_08885"
     CDS             complement(4049..4528)
                     /locus_tag="VE686_08885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018261759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family transcriptional regulator"
                     /protein_id="HYY84598.1"
                     /translation="MTERADNREEAEIVGGGAARVGNDYVLEDQIGFRLRKAHQRATD
                     DFTAVMGRFEVTPTQFAALAKLHAAGPLPQSQLGRLTAMDPATLSGVVQRLTRRGCVR
                     QSVHPRDGRLAVVSLTAQGAAAAAAMTAAAGAVSARTLAPLTAREAATLLKLLARLG"
     gene            complement(4525..>4861)
                     /locus_tag="VE686_08890"
     CDS             complement(4525..>4861)
                     /locus_tag="VE686_08890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015927945.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="6-hydroxynicotinate reductase"
                     /protein_id="HYY84599.1"
                     /translation="TQNPVLLTRSVAKGRTRVTLGGAPAYVWPGGGITIMADVTRMPK
                     GSFGHVPTPAIVAPIEFTLPRALYLALGGHEADVTSLAEVLRATAGEARVEPWPEQNP
                     WPLDRGEAR"
BASE COUNT          691 a         1707 c         1721 g          742 t
ORIGIN      
        1 gggccattcg acccgctttc ttgcgcaggc agcggtcgac gggggccttg cgactgacat
       61 cctgtgcatt gacccggcgc cgcgcgcccc tatcgacgcc ctcccggtgc gccacgtggc
      121 gtccctcctg cgcgacgccg acccggcgat cgtcgcaagc cttcgcgccg gggacgtgct
      181 gttcatcgac tcgagccaca tcgccatgcc gggcaccgac gtggaccggc tcttcctcga
      241 cgtcctgccg cggctgcccg caggcgtgct cgtccacgtc cacgacatct tcctgcccga
      301 cccttatccg cccgagtggg cgtggcgcgg ctacaacgag cagctcctgg tcgccgcgct
      361 gctcggggga gggcggtacg agctcgtgtg gtcgagccgc tgggtcacca tgcgccggcc
      421 cgagctcgtc ccgcggcgtc tgctcgggcc cgccctgccg cccggcgcct acgagtcgag
      481 cctctggctc aaggtgctgc acggcaactg acgggcgcgt tcatcctcca tcaagattgg
      541 gtggattaga aacgatcctg aaacagccgc gacatccgcc cgacacggcg cgggtccagg
      601 ctgcgggccg atgtgttgcg gacgaaggct atggtcgtga gtttcgttca tcgtgtcgtc
      661 gacagcctgg cgcaggtcgt gcgcgagctg accgacagct accaccccga acgccactac
      721 atgcgcggcc ccggccccaa gtggcgcgag cgccacggcg cgatctagct gcaaccctct
      781 ccctttggga gagggtttcc ctcagtaggt cgcgcggccg ccggacaggt cgaacaccgc
      841 gcccgtcgtg aacgagttct cggccgagca cagccacgcc accatggcgg cgatctcgcg
      901 cggttcgacg aagcggttgc gcgggatctt cgacagcatg aagtcgatgt gctcctggct
      961 catctggtcg aagatgcgcg tgcgcgcggc cgccggcgtg atggtgttca cggcgatgtc
     1021 gagcgtggcg agctccttgc cgagggactt cgtcagcgcg atcacggccg ccttcgaggc
     1081 cgagtacggc gcggcgttgg ggttgccctc cttgccggcg accgacgcga ccgtgacgat
     1141 gcggccgtag ccttgcgcga tcatcgaggg gatcacggcg cggcagcaca gcatggtgcc
     1201 gtcgacgttg atcttcatga tccggtccca ggcgtcgagc ggatactccc acgtcttctt
     1261 gttggggccg gcgatgccgg cgctggtgac caggatgtcg atcggtccgt gcgcgccctc
     1321 gcaggccttg gcggcggcca tgacggcttc cgcgtcggtg acgtcgacgc cgcgcgcgtg
     1381 cacggtctcg ccgatctcgg ccgccgtctc ggccgcgagg tcgccgtcga ggtcccagat
     1441 ctcgaccgtg gcgccgctcg ccgcgaagcg ctcgacgacc gattgcccga tgccctgagc
     1501 gccgcccgtg acgatggcga cgtgcccgtt gaggtcgatc tggttcatgg gcgcgctccg
     1561 tccggctcga gatgcgcgcg aaccctagcc gattgcgtcc gcgagggaag gggcccgcgc
     1621 gctgccctca cccggtcggc tgcgccgacc cgacgcctcc cgcgagcggg agaggcttca
     1681 agcgacgacg ccgagcttct tctgcaggct cgtcgaggag gtcgtgtact ggaacagcag
     1741 cttcttctcc gggaagacgt agcggtgcac cttctgtgcc gccagtgccg cctcgtggaa
     1801 gcccgacagg atgagcttca gcttgcccgg gtagtggttg atgtcgccga ccgcgaagat
     1861 gcccgggacg ctggtctcga acttctcggt gtcgacgggg atcaggttct cgtgcaggtt
     1921 caggccccag tcggcgatgg ggccgagctt catggtcagg ccgaagaacg gcagcatcac
     1981 gtcgcaggcg atgtccacga ccgagccgtc gtcgcgcttc acctcagcgg cctcgagcac
     2041 cggcgccggc cccttgagcc cggtgacctg accgagggcg aaatccatgg cgttgcccgc
     2101 gacgagcgca cgcatcttgt tgacgctgtc gggcgcggcc cggaaggcgt cccggcggtg
     2161 cagcagggtc aggcgcttgg ccagcggctg caggttcacg gtccagtcga gagcggagtc
     2221 gccgccgccg acgatgagca cgcgcttgcc gcggaagcgc tccatctgcc gcacggcgta
     2281 gtgcacgccc gtgccctcgt agccctcgat gcccgggatc ggcggcttct tcggctggaa
     2341 cgacccgccc ccggccgcga tcaggatcga cttgcacgtg aaagtcgtgc cgccgtccgt
     2401 gcgcacctgg aacttcggcg cgtcgccggt cccgagcgtc tccatgcttt cgaccatctc
     2461 gttgagatgg aacgtcggat ggaacggctc gatctgggcc atcaggttgt cgacgagccc
     2521 ctggccggtg accaccggga agcccgggat gtcgtagatc ggcttctcgg gatagagctc
     2581 ggcgcactgg ccgccgacct tcggcatgat gtcgatcagg tgcgccttga tgtcgaggag
     2641 gccgagctcg aacacggcga agaggccgac cggccccgcg ccaatgatca cgacgtcggt
     2701 ctcgatgtgg tccgtcatgc agtcatgctc ctcgaaggcg gcgagcctaa agcacggcgc
     2761 tggccgcggt gcaacgcgag ggcgctcagc cgaccggtgc gaggctgacc tcgaggccgt
     2821 cgagctcggg cgcgtagagg atctggcacg agaggcgcga gttgccctgc gtcagaggca
     2881 cggtatcgag ctggctctcc tcctcgtcgc tggccggatg gaggcgctcg acccactcgg
     2941 gcgcgacgaa gacgtggcag gtggcgcact cgcaggcgcc cccgcacaga ccctcgatgg
     3001 gcaggcccca ctcacggatg atctccatca cgcgccagcc ctcgaccgcc tcgagcgtgt
     3061 ggcgctcgcc tgcgcgatcg atgacgtgga tcacgcccat gggaagctcc tcggaacggt
     3121 cggggtgacg gcgcggtggc tcgaggacgg gcgagctgcg gccgggatgt ccgatatggg
     3181 agccggcagg gtcacgtcaa cgccgggacg gcgccgaccg tgaccgcctc gccgcgcagc
     3241 atcagggcgg cgccgcgcat gagaccgcgg tcgagaaagc gccgagcctc cgcggcgccg
     3301 cgctccagcg cctcggcgat ctccgccggg cttaagggac ccacgcccgt ggtgacgagc
     3361 cgatcgccga gatcgctatc cggatcgagg tcccgggcgg ggcagcgctg tatcgccggc
     3421 gacacaagcg tcacggcgtt ggcgacgagc gtcgcggcgg cgtccgcacc cgccgcggtg
     3481 gtggcgacca cggtgacggc atcggcgatg cccatggaaa aggagcggcc gttgaagccc
     3541 gaggtggcga cgccgccgat gccgtcctcg gcgcaaacgg tcagcgcgcc gttgagcgcc
     3601 ggaatcgcgc cgccggagaa gtcgcccgcg acgccgattg tgaggcgctc gcctggggcg
     3661 acatggacgg cgatgtcgcc gccgtcgttg acgaaggcct tgggcagggc cgccgctttg
     3721 agcatggcgg caagcagctc gtcggcgacg cttccggcaa cggcggccat gggcgtgatg
     3781 aaggtgtcgg caaacgggcg taccgccgcc accatccgcc tcgcgacagc cccctcgacg
     3841 cacggcccgt cccatgcggg acggcgcagc tgcgccagct cgccgacgag ctctccgagc
     3901 acggtcccga agcgctccgc gacggcgtcg taggcccgcc gcagctcggc ggccgggccc
     3961 caagcccgca gcacgacatc gatcggtccg tgcgacagat ggagcctgtc gcccgcaagg
     4021 gcctggatgc gagggcgctc catggcgatc agccgaggcg ggcgaggagt ttcaggagcg
     4081 tcgcggcttc tcgtgcggtg agcggcgcca gagttcgcgc cgagactgcg ccggcagccg
     4141 ccgtcatggc cgctgccgcc gccgcgccct gcgccgtgag gctgaccacg gcaagccgcc
     4201 cgtcgcgcgg gtggacggac tgccggacgc agccgcgcct cgtgagccgc tgcaccacgc
     4261 cggagagcgt cgccgggtcc atggcggtca gcctgccgag ctgactctgg ggcaagggcc
     4321 ccgccgcgtg cagcttcgcg agcgccgcaa actgggtcgg cgtgacctcg aagcggccca
     4381 tgacggcggt gaagtcgtcc gtggcgcgct ggtgcgcctt gcgcaggcgg aacccgatct
     4441 ggtcctcgag aacataatcg ttccccacgc gcgcggcccc gccgccgacg atctcggctt
     4501 cctcgcgatt gtccgcgcgc tccgtcatcg cgcttcgcct cgatcgaggg gccacggatt
     4561 ttgctcaggc cacggctcga cccgcgcttc gccggcggtc gcgcgcagca cctcggcgag
     4621 gctcgtaacg tcggcttcgt gcccgccgag cgccaggtag agcgcgcgtg gcagcgtgaa
     4681 ctcgatcggg gccacgatcg ccggcgtcgg cacgtggccg aacgagccct tcggcatccg
     4741 ggtcacgtcg gccatgatgg tgatcccgcc gcccggccag acgtacgccg gcgcgccgcc
     4801 gagcgtcacc cgcgtccggc ccttcgccac cgagcgggtg agcaggacag ggttctgcgt
     4861 c
//
LOCUS       DASQWN010000472         2187 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1471997, whole genome shotgun sequence.
ACCESSION   DASQWN010000472 DASQWN010000000
VERSION     DASQWN010000472.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2187)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2187)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2187
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1471997"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..75)
                     /locus_tag="VE686_08895"
     CDS             complement(<1..75)
                     /locus_tag="VE686_08895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013166418.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HYY84600.1"
                     /translation="MEYLHTMVRVTDLDQSLDFYCNKLG"
     gene            216..1631
                     /locus_tag="VE686_08900"
     CDS             216..1631
                     /locus_tag="VE686_08900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019402084.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cation-efflux pump"
                     /protein_id="HYY84601.1"
                     /translation="MAEPPSNDGSLDTGKRKERAALWSIAASTGITLAKGAVGLASGS
                     LALISDAAHSLLDVAATTITWLAVRAAHKPADEQHQYGHGKLESLAALVETAFLFLLS
                     GAVALEGARRLWQGNAEVEPSWLAAGVLVAAIGVDAWRWWGLKQVARETGSEALEADA
                     LHFSADLVNSALVLVALGAAALGYPQADAAVAIGVSLFIAIAGFRLARRTVESLLDAA
                     PKGLSERIRAKVEEVPGVVSVQRVRVRPAGDKVFGEISVHVSRTLPFEHVAAVKERIL
                     RAVAEEAPRSEIVVAAEPKQLDDETILEQVLLLAAKQRVPVHHVMVQEVNGRTSLSLD
                     LEVDGRMSLGAAHALATKLESAIRDELGSEMEVDTHIEPLRITPMAGHDETPETLARI
                     ERTLSATAVLVGEVSDIHSVRVRRTVDGLLVTYHCRFDPSLSVSNVHSHVDELERRMR
                     ADHPEILRITGHAEPIGFRPH"
     gene            1699..>2187
                     /gene="pepN"
                     /locus_tag="VE686_08905"
     CDS             1699..>2187
                     /gene="pepN"
                     /locus_tag="VE686_08905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015821001.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminopeptidase N"
                     /protein_id="HYY84602.1"
                     /translation="MRSDNPPIIRLDEYRPSDFLIDRVDLDIRLHATQTRVSAVLALR
                     PNPAGSPDAPLVLDGDELTLLAAGLDGRAIPAGDFAATANGLVIPAPPRRPFTLSLET
                     QIDPAANTKLMGLYRSGGTYCTQCEAEGFRRITYFLDRPDVLAVYTTRIEASREEAPV
                     LLG"
BASE COUNT          348 a          756 c          735 g          348 t
ORIGIN      
        1 gccgagcttg ttgcaataga agtcgagcga ctggtcgagg tccgtcacgc ggaccatcgt
       61 gtgcaggtat tccacgtctg tgctccttgc tgggcggcgc ccccgccgcg cttgaccgcg
      121 atcatggacc atgatgggtc cgcgacgccc aatatggagc gcgctgaggg ccggcgcgag
      181 cctccccagt cccctgaacg aaggcggttt acgaattggc cgaaccaccg agcaacgacg
      241 gcagcctgga caccggcaag cgcaaggagc gcgccgccct ctggtcgatc gcggcgagca
      301 cgggcatcac cctcgcgaaa ggagcggtcg gcctcgcctc gggctcgctc gccctcattt
      361 cggacgctgc ccacagcctc ctggacgttg ccgcgacgac aataacctgg ctcgccgtgc
      421 gcgcggccca taagcctgcg gacgagcagc atcagtacgg ccacggcaag ctcgagtccc
      481 tcgcggccct cgtcgagacg gcgttcctgt tcctcctgtc cggcgcggtc gccctcgaag
      541 gcgctcgccg cctctggcag ggcaacgccg aagtcgagcc gagctggctc gcggcaggcg
      601 tcctcgtcgc ggccatcggg gtggacgcct ggcgctggtg ggggctgaag caggttgcgc
      661 gcgagacggg cagcgaggcg ctcgaagcgg acgcgctgca tttctcggcc gacctggtca
      721 attccgccct tgtccttgta gcgcttgggg ccgccgcgct cggctatccg caggccgacg
      781 ccgccgtcgc catcggcgta tcgctcttca tcgccatcgc gggctttcgg ctggcgcggc
      841 gaaccgtcga gagtctgctc gatgcggcgc cgaagggcct gagcgagcgc atccgggcga
      901 aggtggagga ggtccccggg gtggtctcgg ttcagcgggt ccgcgttcgg ccggcgggcg
      961 acaaggtctt cggcgagata tcggtgcacg tgtcgcggac gctgccgttc gagcatgtag
     1021 ccgccgtcaa ggagcgcatt ctgcgggcag tggcggagga agcaccccga tccgaaatcg
     1081 tcgtcgcggc agagccgaag cagctcgacg atgagacgat tctcgagcag gtgctcctgc
     1141 tcgcggcgaa gcagcgcgtg cccgtccacc acgtgatggt ccaggaggtg aacggccgca
     1201 cgagtctcag cctcgacctg gaggtcgacg gccggatgag tctcggggcg gcgcatgcgc
     1261 tcgcgacaaa gctcgaatcc gcgatccgcg acgaactcgg gtctgagatg gaggtcgaca
     1321 cgcacatcga gcccttgcgc attactccga tggcgggcca cgacgaaacg cccgagacgc
     1381 tggcgcgcat cgagcgcacc ctgtcggcga cggccgtcct cgtcggcgag gtgagcgaca
     1441 ttcattcggt gcgcgtccgc cgcaccgtgg acggcctcct cgtcacgtac cattgccgct
     1501 tcgacccgtc gctcagcgtg tcgaatgtcc atagccatgt cgacgagctc gagcggcgca
     1561 tgcgggccga ccatccggag atcctgcgca tcacaggcca cgccgagccg atcggcttca
     1621 ggccgcacta agaggcgcgt ttgcaggtgc cgtggcgctc cgccatatag ggtcccccgc
     1681 cagagaaccg gcagctccat gcgcagcgac aatccgccga tcatccggct cgacgagtac
     1741 cggccgagcg acttcctcat cgatcgggtc gatctcgata tacgcctgca cgcgacgcag
     1801 acgcgggttt cggcggtgct ggcgttgcgc cccaatcctg caggatcgcc cgatgcaccg
     1861 ctggtgctgg acggcgacga gctgacgctc ctcgcagccg gcctcgacgg acgcgcgatc
     1921 cctgctggag actttgccgc caccgcgaac ggattggtca tcccggcccc tccccggcga
     1981 cccttcacgc tgtcgctcga gacgcagatc gatccggcgg ccaacacgaa gctgatgggg
     2041 ctgtaccgat cgggcgggac gtactgcacg cagtgcgagg ccgaaggctt tcgccgcatc
     2101 acatatttcc tcgaccgtcc cgatgtcctc gccgtgtaca cgacgcgcat cgaagcctcg
     2161 cgcgaggaag cgcccgtcct gctcgga
//
LOCUS       DASQWN010000473         2662 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_678413, whole genome shotgun sequence.
ACCESSION   DASQWN010000473 DASQWN010000000
VERSION     DASQWN010000473.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2662)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2662)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2662
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_678413"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1359
                     /gene="ubiB"
                     /locus_tag="VE686_08910"
     CDS             <1..1359
                     /gene="ubiB"
                     /locus_tag="VE686_08910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009490490.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016709 - oxidoreductase activity, acting
                     on paired donors, with incorporation or reduction of
                     molecular oxygen, NAD(P)H as one donor, and incorporation
                     of one atom of oxygen [Evidence IEA];
                     GO_process: GO:0006744 - ubiquinone biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-polyprenylphenol 6-hydroxylase"
                     /protein_id="HYY84603.1"
                     /translation="VKFGQFLATRPDIVGVAAAHDLELLQDRMPPFPRAEAVRMVEIA
                     LGRSIEALFVSFSEPVAAASIAQVHQARLATPEGEIMVAVKVIRPGVREQFAREIQAM
                     RFAARLFERFAPDARRLRPQEVVETLARSVSIEMDLRLEAAAVSELAENTRDDPDFRV
                     PKPEWDLTARDVLTTEWIDAIRLNDIPAIEAAHLDRVALARTVIQSFLRHAIRDGYFH
                     ADMHPGNLFVDHLGRLVAVDFGIMGRLGHKERRFLAEILLGFIRRDYLRVAQVHFEAG
                     YVPPRHSVEDFAQALRAIGEPIHDRRADEISMARLLTLLFEVTSLFDMETRPELVMLQ
                     KTMVVVEGVGRTLDPKLDMWSTSEPVVRDWIERNLGPVGRIEEAGRGIATLANVLSDL
                     PDIAQRGERVLAKLEDAADHGFRLARDSLDGIGRAEARRARWQTAALWVIAGLLALAL
                     FG"
     gene            1424..1642
                     /locus_tag="VE686_08915"
     CDS             1424..1642
                     /locus_tag="VE686_08915"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY84604.1"
                     /translation="MTTRNDNDSAERGPVSTPRPGAIGEAPTNLAELIANIMDPLGGV
                     ELDIPPRARTGPFAIFDAWPDDEERADA"
     gene            1635..>2662
                     /gene="coaBC"
                     /locus_tag="VE686_08920"
     CDS             1635..>2662
                     /gene="coaBC"
                     /locus_tag="VE686_08920"
                     /EC_number="4.1.1.36"
                     /EC_number="6.3.2.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009490488.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004632 - phosphopantothenate--cysteine
                     ligase activity [Evidence IEA];
                     GO_function: GO:0004633 - phosphopantothenoylcysteine
                     decarboxylase activity [Evidence IEA];
                     GO_process: GO:0015937 - coenzyme A biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0015939 - pantothenate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional phosphopantothenoylcysteine
                     decarboxylase/phosphopantothenate--cysteine ligase CoaBC"
                     /protein_id="HYY84605.1"
                     /translation="MPELTGKRVLLIIGGGIAAYKALDLIRRLRERGASVRCILTKGA
                     QEFVTPLAAASLAGTKAHTDLFDRDDEADIGHIRLARDADVVVVAPATANLLAKIAGG
                     HADDLASAVLLATALPILVAPAMNPRMWLHPATQRNVALVRADGVRFVGPNEGPMAEA
                     ETGPGRMSEPLEIVAAVEDLLQAGGAGPLAGKRVLVTSGPTHEPIDPVRYLANRSSGK
                     QGHAIARAAAEAGAAVTLVSGPVAIPDPPGVTTVHVESAREMLAAVDAALPADIAVFA
                     AAVADWRAETAASNKLKKDGGAPAPLRLAENPDILATVAKRGQGRPPLVVGFAAETDK
                     VVDNARAKL"
BASE COUNT          385 a          978 c          915 g          384 t
ORIGIN      
        1 gtcaaattcg gccagttcct ggcgacgcgt ccggacatcg tcggcgtcgc ggcggcgcac
       61 gacctcgaac tcctgcagga ccggatgccg cctttcccgc gcgccgaggc ggtgcgcatg
      121 gtcgagatcg ccctcgggcg ctcgatcgaa gcgctcttcg tgagcttcag cgagcccgtc
      181 gcggcagcct cgatcgcgca ggtgcatcag gcgcgccttg cgacgcccga gggcgagatc
      241 atggtcgccg tgaaggtgat ccggcccggc gtgcgcgagc agttcgcgcg cgagatccag
      301 gccatgcgct tcgccgcgcg gctgttcgag cgcttcgcgc ccgacgcccg ccgcctgcgg
      361 ccgcaggagg tcgtcgagac cctggcccgc tccgtctcca tcgagatgga cctgcgcctc
      421 gaagcggcgg cggtgtcgga gcttgccgag aacacccgcg acgatccgga cttccgggtg
      481 ccgaagcccg agtgggacct gaccgcccgc gacgtgctga cgaccgagtg gatcgacgcc
      541 atccggctca acgacatacc ggcgatcgag gcagcgcacc tcgaccgggt cgcgctcgcc
      601 cgcacggtga tccagtcatt cctgcgccac gccatccgcg acggctactt ccatgccgac
      661 atgcacccgg ggaacctgtt cgtcgaccat ctcggccggc tcgtcgccgt ggacttcggc
      721 atcatgggcc gcctcggcca caaggagcgg cggttcctgg ccgagatcct gttgggcttc
      781 atccgccgcg attacctgcg cgtcgcccag gtgcatttcg aggccggcta cgtaccgccg
      841 cgccactcgg tcgaggattt cgcgcaggcg cttcgcgcca tcggcgagcc gatccacgac
      901 cgccgcgcgg acgagatctc catggcccgg ctgctcacgc ttttgttcga ggtcacgtcc
      961 ctcttcgaca tggagacgcg gcccgagctc gtcatgctgc agaagaccat ggtggtggtg
     1021 gagggcgtcg gccgcaccct cgatccgaag ctcgacatgt ggagcacctc cgagccggtg
     1081 gtgcgcgact ggatcgagcg taatctcgga cccgtcggcc gcatcgagga ggcgggccgg
     1141 ggcatcgcga ccctcgccaa cgtgctctcc gatctgcccg acatcgccca acgcggcgag
     1201 cgcgtgctcg ccaagctcga ggacgccgcc gaccacggct tccgcctcgc gcgcgacagc
     1261 ctcgacggca tcggccgtgc cgaggcgagg cgcgcccgct ggcagacggc ggcgctctgg
     1321 gtcatcgccg gactgctggc gttagcgctg ttcggctgac ggcgttgcgc tccatcggcc
     1381 tcgctcttac ggtcggccaa ctttagtggg cgcggatggt gccgtgacga cccgcaacga
     1441 taatgactcg gcggaacgag gacccgtctc cacccctcgc cccggcgcga tcggtgaggc
     1501 gccgacgaac cttgccgagc tgatcgcgaa tatcatggac ccgctcggcg gtgtcgaact
     1561 cgacattcca cctcgcgctc ggaccggccc gttcgcgatt ttcgatgcat ggccggacga
     1621 cgaagagcgc gctgatgcct gagctcaccg gcaagcgcgt cctcctgatt atcggcggcg
     1681 ggatcgcggc ctataaggcg ctcgatctca tccgccgtct gcgtgaacgc ggcgcgtcgg
     1741 tgcgctgcat cctgaccaag ggcgcgcagg agttcgtcac gccgctcgcg gccgcgtcgc
     1801 tcgccggcac gaaggcgcac accgacctgt tcgaccgcga cgacgaggcc gacatcggcc
     1861 acatccggct cgcgcgggac gccgacgtcg tcgtcgtggc gcccgcgacc gcgaacctgc
     1921 tggcaaagat cgcgggcggg cacgccgacg acctcgcctc ggcggtgctg cttgcgacgg
     1981 cgctcccgat cctcgtggcg ccggccatga acccgcgcat gtggctgcac ccggcgacgc
     2041 agcgcaacgt cgccctggta cgcgccgacg gggtgcgctt cgtcgggccc aacgagggcc
     2101 ccatggcgga ggccgagacg ggtccgggcc gcatgagcga gcccctcgag atcgtcgcgg
     2161 ccgtcgagga cctcctgcaa gctggaggcg ccgggccgct cgcgggaaag cgcgtgctgg
     2221 tcacctcggg gccgacgcac gagccgatcg acccggtgcg ctacctcgcc aaccgctcgt
     2281 cgggaaagca gggacacgcc attgccagag cagcggccga ggcgggcgcg gccgtgacgc
     2341 tcgtatcggg gccggtcgcg atcccggacc ccccgggcgt cacgaccgtg cacgtcgaga
     2401 gcgcccgcga gatgctcgcc gccgtggacg cggccctgcc ggccgacatc gccgtgttcg
     2461 ccgctgcggt cgccgactgg cgcgccgaga ccgccgcgag caacaagctc aagaaggacg
     2521 gcggcgcgcc ggcgcccctg cggcttgccg agaaccccga catcctcgcg accgtcgcca
     2581 agcgcgggca gggacggccg ccgctcgtcg tcggcttcgc ggccgagacc gacaaggtcg
     2641 tcgacaatgc ccgcgccaag ct
//
LOCUS       DASQWN010000474         3003 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_84385, whole genome shotgun sequence.
ACCESSION   DASQWN010000474 DASQWN010000000
VERSION     DASQWN010000474.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 3003)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3003)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3003
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_84385"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..365
                     /locus_tag="VE686_08925"
     CDS             <1..365
                     /locus_tag="VE686_08925"
                     /inference="COORDINATES: protein motif:HMM:NF013584.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="amidase family protein"
                     /protein_id="HYY84606.1"
                     /translation="ADVSPALREGALARGRALPVPAYAEALEVAEAFRRFLDDAFADT
                     DAILAPSAPGEAPAGLEWTGDPRFNAVWTLAWTPCITLPVGAGPSGLPLGIQLVGRRN
                     RDAALLDTAAWVEARLRD"
     gene            complement(528..2417)
                     /locus_tag="VE686_08930"
     CDS             complement(528..2417)
                     /locus_tag="VE686_08930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007569400.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HYY84607.1"
                     /translation="MAQPILEVADLTTSFRVQGTWRPVVRNLSFSIGPQETVAIVGES
                     GSGKSVTALSIMRLTPRDTSRVTGRVLLRGRDLLALPEAEMRRVRGDEIAMIFQEPMT
                     SLNPVLTIGFQIGEALILHRGMSRAQAEAETVRLLDKVRIPNARARLHDYPHHFSGGM
                     RQRVIIAMALACRPKLLIADEPTTALDVTIQAQILELIKSLQDDEGMSVLFITHDMGV
                     VAEIADRTVVMNDGVAVESGSTDAIFARPQHGYTRALLASVPILGSMAGRSHPLRSPV
                     VDRTTGAVAPAVEAPDTIATSARPVLEVKGLTTRFDIHSGLFGRVSGRVHAVENVSFS
                     LAGGETLALVGESGCGKSTTGRSLMRLIEPISGSVVLDGEDIMTLGPRDLQDRRKLMQ
                     MIFQDPFASLDPRMTIGAAIAEPLLINKLAARREARDIAADLLRRVGLSSDMTSRFPH
                     EFSGGQRQRIAIARALAVKPRLIVADEAVSALDVSVKAQVINLMLDLQAEMKLAYLFI
                     SHDMAVVERVSHRIAVMYLGEIVEIGPRAAVLENPQHPYTRRLLAAVPVPDPARRGTR
                     RRVADGDLKSPIRPVDFVPPERLYREVSAGHAVQIWGPEWDNPSELMPDVPQATTGHE
                     AQAIA"
     gene            complement(2435..>3003)
                     /locus_tag="VE686_08935"
     CDS             complement(2435..>3003)
                     /locus_tag="VE686_08935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007615333.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HYY84608.1"
                     /translation="GMSRGAANSFLTWLTDLFLSLPQLPLLLLIIYLFRDRLKAVFGL
                     EGGIFVIIVLVIGGLRWMPVARLVRAQFLSLREKEFVEAARSQGASKLHLVMRHILPN
                     ALGPVIVASTIEVSTAIIAESTLSFLGLGFPPDIPTWGRILFDAKDHLEFAPHWALFP
                     GAAIFLTVLSINFVGDGLRDALDPRRML"
BASE COUNT          481 a          991 c         1084 g          447 t
ORIGIN      
        1 ttgccgacgt gagcccggcc ctgcgcgagg gagcgctggc ccgaggccgg gcgcttcccg
       61 tccctgccta cgcggaagcg cttgaagtgg cggaggcttt ccgccgattc ctcgacgatg
      121 ccttcgccga cacggacgcc atcctcgcac cgagcgcacc cggcgaggcc cccgccggcc
      181 tcgagtggac cggagacccc cgcttcaacg ccgtctggac ccttgcctgg accccctgca
      241 tcacccttcc ggtcggcgcc ggacctagtg gcctgccgct gggcatccaa ctcgtcggcc
      301 gccgcaaccg cgacgccgcg cttctcgata cagcggcatg ggtcgaggcg cgcctccgcg
      361 actgatctga tagcggggcc gatcagctgg cctatcttgg cgtgtggcgc gcgatcgtca
      421 tgaccgcgct cgtcgcagag gggcgcggtc atgatgaccg gcgctcatgc gcactcctgt
      481 tatgatctcc gcggcacatt cgcgggcggg cctgccgtcg cgaagcgtca ggcgatcgcc
      541 tgggcctcgt ggccggtcgt cgcctggggc acgtcgggca tgagctcgga cggattgtcc
      601 cattccggcc cccagatctg gaccgcgtgc cccgccgaga cctcgcggta gaggcgctcc
      661 ggcgggacga aatcgacggg acggatcggg ctcttgaggt cgccgtcggc gacgcggcgc
      721 cgggtgccgc ggcgcgcagg atctggaacg gggacggcgg cgaggaggcg gcgcgtgtag
      781 gggtgctgcg ggttctcgag aaccgccgcg cgcggcccga tctcgacgat ctcgccgagg
      841 tacatcacgg cgatgcggtg gctgacccgc tccaccacgg ccatgtcgtg cgagatgaac
      901 aggtaggcga gcttcatctc cgcctggagg tcgagcatca ggttgatcac ctgcgccttc
      961 acggacacgt cgagggccga cacggcctcg tcggcgacga tgagccgagg cttgacggca
     1021 agcgctcgcg cgatggcgat gcgctggcgc tgcccgcccg agaactcgtg cggaaagcgg
     1081 ctcgtcatgt cgctcgacag gccgacccgg cgcaggagat cggccgcgat gtcccgcgcc
     1141 tcccgccgcg ccgcgagctt gttgatgaga agcggctccg cgatggcggc gccgatggtc
     1201 atgcgcggat cgaggctggc aaagggatcc tggaagatca tctgcatgag cttgcgccgg
     1261 tcctgcagat cgcgcggccc gagcgtcatg atgtcctcgc cgtcgagcac gacggaaccc
     1321 gagatgggct cgatgaggcg catgagcgag cggcccgtcg tcgacttgcc gcagccggac
     1381 tcgccgacga gggccagcgt ctcgcctccg gcgaggctga aggagacgtt ctcgaccgcg
     1441 tggacacggc cgctcacccg cccgaaaaga cccgagtgga tgtcgaagcg ggtcgtcagg
     1501 cccttgacct ccagcaccgg ccttgcgctc gtcgcgatgg tgtcgggcgc ctcgacggcc
     1561 ggtgcgaccg cgcccgtcgt gcggtcgacg accggagacc ggagagggtg cgaccggcct
     1621 gccatggagc ccaggatcgg cacggaagcc aagagggcgc gcgtatagcc gtgttgcggc
     1681 cgggcgaaga tggcgtcggt gctgccgctt tccaccgcga cgccgtcgtt catgaccacc
     1741 gtccggtcgg cgatctcggc gacgacgccc atgtcgtggg tgatgaacag gaccgacatg
     1801 ccctcgtcgt cctgcaggct cttgatgagc tccaggatct gcgcctggat agtgacgtcg
     1861 agggcggtcg ttggctcgtc ggcgatgagc agcttcggcc ggcaagccag cgccatggcg
     1921 atgatgacgc gctggcgcat gccgccggag aagtggtgcg gatagtcgtg cagcctcgcc
     1981 ctggcgttcg ggatgcggac cttgtcgagt agccgcaccg tctcggcctc ggcttgtgcg
     2041 cgcgacatgc cccggtggag gatcagcgcc tcgccgatct ggaagccgat ggtaagcacc
     2101 gggttcaggc tcgtcatcgg ctcctggaag atcatggcga tctcgtcgcc gcgcacgcgc
     2161 cgcatctcgg cctcgggcaa ggcgaggaga tcgcggccgc gcagcagcac acggccggtc
     2221 acccggctcg tgtcccgcgg cgtcaggcgc atgatggaga gcgcggtgac gctcttgccg
     2281 gagccggatt ctccgacgat cgcgacggtc tcctgcggcc cgatggagaa ggagagattg
     2341 cgcaccacgg gccgccaggt gccctgcacc cggaacgacg tggtgaggtc cgcgacctcg
     2401 agaatcggtt gggccacgct gcgaacctga cctttcagag catgcggcgg gggtcgaggg
     2461 cgtcgcggag cccatcgccg acgaagttga tcgacaagac cgtcaggaag atcgcggcgc
     2521 cggggaacag cgcccagtgc ggcgcgaact cgaggtggtc cttggcgtcg aagaggatgc
     2581 ggccccacgt cgggatgtcg ggcggaaagc cgaggccaag gaacgagagg gtcgattccg
     2641 cgatgatcgc cgtcgagacc tcaatcgtgc tcgccacgat caccgggccg agcgcgttcg
     2701 gcaggatgtg gcgcatgacg agatgcagct tgctcgcgcc ctgcgaccgc gccgcctcga
     2761 caaactcctt ctcgcgcagg gagagaaact gcgcccgcac gagccgggcg acgggcatcc
     2821 agcgcaggcc gccgatgacg aggacaatga tgacgaagat gccgccttcg aggccgaaca
     2881 cggccttcag gcggtccctg aagagataga tgatgaggag cagaagcggg agctgcggca
     2941 gtgacaggaa caggtcggtg agccaggtca gaaacgagtt ggcggcgccc cgcgacatgc
     3001 cag
//
LOCUS       DASQWN010000475         3720 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1174393, whole genome shotgun sequence.
ACCESSION   DASQWN010000475 DASQWN010000000
VERSION     DASQWN010000475.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 3720)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3720)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3720
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1174393"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..616
                     /locus_tag="VE686_08940"
     CDS             <1..616
                     /locus_tag="VE686_08940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015928228.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ATP-dependent DNA ligase"
                     /protein_id="HYY84609.1"
                     /translation="SPVIPFGTWEELTAARADPASVGAGEDAEAIEGCMLKRADSPYV
                     PGRPKGLWYKWKRDPYLVDAVLMYAARGSGKRSSFYSDYTFGCWRDGPEGDELVPVGK
                     AYFGFTDEELKQIDRYVRNHTANRFGPVREVAYAKDRGLVLEVAFEGLQRSTRHKSGV
                     AMRFPRISRIRWDKPAGEADRLETLERILAKGETEVHPLRGGRP"
     gene            613..1077
                     /locus_tag="VE686_08945"
     CDS             613..1077
                     /locus_tag="VE686_08945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018046107.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0008150 - biological_process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="secondary thiamine-phosphate synthase enzyme
                     YjbQ"
                     /protein_id="HYY84610.1"
                     /translation="MRARVGSVETVSQGAVTRQALGRLVIETPGPGFTELTAPLAAWV
                     SEQRIAAGLLTVFCRHTSASLTIQENADPDVRTDLMTALDRLAPRDAPYVHGIEGPDD
                     MPAHIRTMLTGASAAVPVVDGKLALGTWQGVYLIEHRDRPHRRELLLHLVGA"
     gene            1199..1867
                     /locus_tag="VE686_08950"
     CDS             1199..1867
                     /locus_tag="VE686_08950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009491399.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HYY84611.1"
                     /translation="MSQPTTILIADDHPLFRGALRQALGSIMPQASVIEASGLDEVMA
                     AMARERDLDLILLDLTMPGVQGFSGLMYLRAQHPDVPVVIVSATEEALVIRRALDFGA
                     AGFIPKSLDAEHIGAAVNAVLAGETWTPPDIDLSTLEDKETGELVRRLARLTPQQVRV
                     LMMLSEGLLNKQIAYELGVSEATVKAHVSAILQKLGVDSRTQAVIAAARIGTTPRPSP
                     AAVE"
     gene            1938..2204
                     /locus_tag="VE686_08955"
     CDS             1938..2204
                     /locus_tag="VE686_08955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009491401.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6460 domain-containing protein"
                     /protein_id="HYY84612.1"
                     /translation="MSSNLQRYLGGSPGSVLVRLLFLSLVVGAFLAFLDVTPVELLER
                     LTRTFRVLLGSGFEAVQRLALWIAYGAMIVVPIWLLSRLFSRGR"
     gene            complement(2814..>3720)
                     /locus_tag="VE686_08960"
     CDS             complement(2814..>3720)
                     /locus_tag="VE686_08960"
                     /EC_number="1.3.5.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009491403.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004152 - dihydroorotate dehydrogenase
                     activity [Evidence IEA];
                     GO_process: GO:0006207 - 'de novo' pyrimidine nucleobase
                     biosynthetic process [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="quinone-dependent dihydroorotate dehydrogenase"
                     /protein_id="HYY84613.1"
                     /translation="GFDKQCEVPDALLALGFGFVELGGVVPNPQPGNPRPRVFRLPRD
                     EAVINRFGLNSDGLRAARERLAARRRRGIVGVNIGANSDSRDRIADYVACTTALAPLV
                     DFITVNVSSPNTPGLRDLQGEAFLDDLLARVAEARHQAADAGTRTTAIVLKIAPDMSL
                     DALDSIVATAARRGIDALMVSNSTVARPASLRETELAREAGGLSGKPLFAPSTRLLAQ
                     AYLRAGGRIPLIGVGGIDSAQAAWTKIRAGASLLQLYSALVYKGPGLIGDIKAGLVRR
                     LTSECTTLAEAVGSDAAAIAEGRFA"
BASE COUNT          533 a         1332 c         1306 g          549 t
ORIGIN      
        1 ttcgccggtg atccctttcg gaacctggga ggagctgacc gccgcccgcg ccgatccggc
       61 gtccgtcggc gccggcgagg acgccgaggc gatcgagggc tgcatgctca agcgcgccga
      121 cagcccttac gtgcccgggc gcccgaaggg actctggtac aagtggaagc gcgaccccta
      181 cctggtcgac gcggtgctga tgtatgcggc gcgcggctca ggcaagcgct cgtccttcta
      241 ctccgactac accttcggct gctggcgcga cgggccggag ggggacgagc tcgttcctgt
      301 cggcaaggcg tatttcggct tcaccgacga ggagctgaag cagatcgacc gctacgtccg
      361 caaccacacc gccaaccgct tcggcccggt gcgggaggtg gcctacgcga aggaccgcgg
      421 tctcgtgctc gaggtcgcct tcgaagggct gcagcgctcg acccggcaca agtcaggcgt
      481 cgccatgcgc ttcccacgca tcagccgtat caggtgggac aagcccgccg gcgaggcgga
      541 tcggctcgag accctcgagc gcatcctcgc caagggcgag accgaggtgc acccgttgcg
      601 gggaggacgg ccatgagggc tcgtgtcgga agcgtcgaga ccgtgtcgca gggcgccgtc
      661 acgcgccagg cgctcggtcg cctggtcatc gagacgccgg gccccggctt caccgaactc
      721 acggccccgc tcgccgcctg ggtgtcggag cagcgcattg ccgccgggct gctgacggtc
      781 ttctgccgcc acacctcggc gtcgctcacc atccaggaga acgccgaccc ggacgtgcgc
      841 accgacctca tgaccgcgct cgaccgcctg gcgccgcgcg acgcgcctta cgtgcacggc
      901 atcgaaggcc cggacgacat gccggcccac atccgcacca tgctcaccgg cgcctcggcg
      961 gcggtgccgg tggttgacgg gaagctcgcg ctcggcacct ggcagggcgt ctacctcatc
     1021 gagcaccgcg accggccgca ccggcgggag ctcctgcttc acctcgtcgg cgcatgaccc
     1081 atcctctgca caaattcacc ctgtcggatg acgaaggaca atgcttcgtt gctgagatcg
     1141 gtctaaagag cgcataatac ggctccaccg ggcaacgccc ggcgtacccg gagggcacgt
     1201 gtcgcagccg acgacgatcc tgatcgccga cgatcacccg ctgttccgcg gggcgttgcg
     1261 gcaggcgctc ggctcgatca tgccgcaagc ctcggtcatc gaggcgagcg gcctcgacga
     1321 ggtcatggcc gccatggcgc gcgagcgcga cctggacctc atcctcctgg atctgacgat
     1381 gccgggcgtg caggggtttt ccgggctcat gtacctgcgc gcccagcacc ccgacgttcc
     1441 ggtggtcatc gtctcggcga ccgaggaggc cctggtgatc cggcgcgccc tcgacttcgg
     1501 cgccgcgggc ttcatcccga agtctctcga cgccgagcac atcggcgcgg ccgtcaacgc
     1561 cgtcctcgcc ggagagacct ggacgccgcc cgacatcgac ctctcgacct tggaggacaa
     1621 ggagacgggc gagctcgtcc ggcgcctggc gcgcctgacg ccgcagcagg tccgggtcct
     1681 gatgatgctg tccgaggggc tcctcaacaa gcagatcgcc tacgagctcg gcgtatcgga
     1741 ggcgaccgtg aaggcgcacg tgtcggcgat cctgcagaag ctcggggtcg acagccgcac
     1801 ccaggcggtg atcgcggccg ctcgcatcgg caccacgcct cggccgagcc cggccgccgt
     1861 cgagtagcgc gcggttgcca cgggcccgcg cgggggccat ctacacgggc ctcaagcttg
     1921 tgcgtcggag agcctcgatg tcgtcgaacc tgcagcgata cctcggcggc tcgccgggat
     1981 ccgtgctcgt tcggctcctc ttcctgtcgc tcgtcgtcgg agccttcctg gccttcctgg
     2041 acgtcacgcc cgtcgagctg ctcgagcggc tgacgcggac cttccgggtg ctcctcggca
     2101 gcggcttcga ggccgtgcag cgtctcgccc tgtggatcgc ctacggcgcc atgatcgtcg
     2161 tcccgatctg gctcctctcc cgccttttca gccgcggcag gtagtgcacg gtgcaatcac
     2221 caaaatagcg cctccacaga gagggcgccg tcatgatgaa gcccgctcat ccgccccatc
     2281 atcgtgatgg ccttgtgcaa accgcggctg gcgtctttcg cacgaaccaa ggcggccgcc
     2341 cttctccctc ccccgctggc gtcagccagc gcggggaggg gcggactcgc gcgaagcgcg
     2401 agccggggtg ggggcgagtc accttggtcg ccagcgcggt cgggagcaca tcggtacgag
     2461 gcccggcggc tctcccccca ccctcgctcg ggctttgccc gagtcgatcc ctccccgcac
     2521 ccgctgatgc gggcgggggg gaggaaccgc ggcatcgtcc gagcgaaatg tggacggctc
     2581 cgacccagaa acgcgagcgg cggcgacccg ttcgcgcgtt ggacaaggcg cagcgatcgg
     2641 gtttcctcgg cggaacgtca cggccagcgc cgtccccacc ccggtcggct ttcgccgact
     2701 cggccctccc ctgcgccggg gagggaggct gcatcgcggc caccgcgggc cacatgcgac
     2761 agccctccct acggtccgca ggggctccga tcagagcgga ccgcgcgcca gcctcaggcg
     2821 aagcggcctt cggcgatcgc ggcggcgtcg ctgccgacgg cctcggccag ggtggtgcat
     2881 tccgacgtga gacgccggac caggccggcc ttgatgtcgc cgatgaggcc cgggcccttg
     2941 tagacgaggg ccgaatagag ctgcagcagg ctcgcgccgg cgcggatctt ggtccacgcc
     3001 gcttgcgcgg agtcgatgcc gccgaccccg atgagcggga tcctgccgcc ggcgcgcagg
     3061 tacgcctgtg ccaggagtcg ggtcgagggg gcgaacaggg gtttgccgga gaggccgccc
     3121 gcctcgcggg cgagctccgt ctcgcgcaag ctcgccgggc gagcgaccgt gctgttcgag
     3181 accatgagcg cgtcgatgcc ccggcgtgcc gccgtcgcca cgatgctgtc gagggcgtcg
     3241 aggctcatgt cgggcgcgat cttgaggacg atcgccgtcg ttcgggtgcc ggcgtccgcg
     3301 gcctggtggc gcgcctcggc gacccgggcg agaaggtcgt ccaggaacgc ttccccctgc
     3361 aggtcgcgca ggcccggcgt gttcggggac gagacgttga cggtgatgaa gtcgacgagg
     3421 ggcgccaggg ccgtcgtgca cgcgacgtag tcggcgatgc ggtcgcgcga atcgctgttc
     3481 gccccgatgt tgacgccgac gatgccgcgc cggcgccggg cggccaggcg ctcgcgggcg
     3541 gcgcgaagcc cgtcgctgtt gaggccgaag cggttgatga ccgcctcgtc gcggggcagg
     3601 cggaagacgc gcgggcgcgg attgccgggc tgcggattcg gcaccacgcc gccgagctcg
     3661 acaaagccga acccgagcgc cagcagggcg tccggcacct cgcactgctt gtcgaacccg
//
LOCUS       DASQWN010000476         3791 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_779568, whole genome shotgun sequence.
ACCESSION   DASQWN010000476 DASQWN010000000
VERSION     DASQWN010000476.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 3791)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3791)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3791
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_779568"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..440
                     /locus_tag="VE686_08965"
     CDS             <1..440
                     /locus_tag="VE686_08965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012320165.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HYY84614.1"
                     /translation="AEAIKQNLEEAGVKVEFVATDTPGWNQRVSNWDFDLTFNFLYQL
                     GDPATGVARSYVSSNIAKGNPFGNVGGYSNPEVDKLFAEAANAPEDKRQELYSRVQKI
                     LVEELPVLWLLELDFPTVSRCNVKDLVTTAIGVNDAMRDAWKQ"
     gene            619..1590
                     /locus_tag="VE686_08970"
     CDS             619..1590
                     /locus_tag="VE686_08970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012047296.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HYY84615.1"
                     /translation="MLRFLAGRVVKGVLVLLAIAVLNFFLIRAAPGDPAQVMAGEAGA
                     ADEVFLQQLRARFGLDRPLLEQLWIYLREVVSFDLGFSYRQQRPVVDIILERLPATLL
                     LTGAAFVVSLALGATLGALAARRARRWSDTAVTTGALLFYATPLFWIALMGQIVFSLK
                     LGWLPNVGYETIGANYTGLRHVLDVGAHLVLPAMTLGLFFTALYARMMRASMLEVAGS
                     DFVKTARAKGLTEGAVVRRHVARNAILPVVTLAGLQAGQLVGGAVLTETVFAWPGIGR
                     LMFDALVQRDYSVLLGVFFVSSAMVVVFNIATDLVYRAADPRIEVGA"
     gene            1587..2423
                     /locus_tag="VE686_08975"
     CDS             1587..2423
                     /locus_tag="VE686_08975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007692878.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HYY84616.1"
                     /translation="MSFVRRFARNRGAVIGCLVLLAVIVVAALAPVMYPQSPWRLVGR
                     PFLAPFALDRFPLGTDALGRDVMAGLMHGARVSLLIGLVSTAVALLIGVPLGALAGYA
                     GGLVDDALMRFTEFFQTIPSFALAIVIVAILQPSIASIVLAIAIVSWPPIARLVRGEV
                     LSLRSREYVQAAITLGQTTPRILLLQVLPNTLAPIIVMASLMVASAILLESSLSFLGL
                     GDPSLMTWGYMIGAGRTRLIEAWWISFFPGVAIFLTVLALNLVGEGLNDALNPRLARE
                     RD"
     gene            2423..>3791
                     /locus_tag="VE686_08980"
     CDS             2423..>3791
                     /locus_tag="VE686_08980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018262652.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HYY84617.1"
                     /translation="MAPVLEIERLTLALPAMADRAHAVKDLSLSIEPGQTLCVVGESG
                     SGKSMTAHAVMRLLPRAVKPAGGAIRLNGTDLLGLSDAAMREVRGRDIGMIFQEPMTS
                     LNPVMRVRDQIAETFEAHGALDRAGRIKRAVALLEEVGLPDPERLARAYPHQLSGGQR
                     QRVMIAIALALEPKLLIADEPTTALDVTTQAQILRLIDNLRKKHGTAVLFITHDFGVV
                     AEIADRVAVLQEGLCVEEGSVDDVLTRPRHAYTKRLLAAVPSLVPPAPKVLAEAEPSL
                     RVEHLSKVYRGRGLFRRGREVRAADDVSFSIRPGETLGLVGESGSGKSTVGRCLLRLV
                     EPDAGAIRIGDLSVRELSAAAFRPHRKRIQMVFQDPFASLNPRRTVGRIVAEGPIAHG
                     MPTRDALDRARELLGLVGLSASAIDRYPHEFSGGQRQRIGIARALALEPEVLVADEPV
                     SALDVS"
BASE COUNT          503 a         1358 c         1267 g          663 t
ORIGIN      
        1 gggccgaggc gatcaagcag aacctcgagg aggcgggcgt gaaggtcgag ttcgtcgcga
       61 cggacacgcc gggctggaac cagcgggtct cgaactggga cttcgacctc accttcaact
      121 tcctctatca gcttggcgac ccggcgaccg gcgtggcccg ctcctacgtg tcctccaaca
      181 tcgccaaggg caatccgttc ggcaacgtcg gcggctactc gaacccggag gtcgacaagc
      241 tcttcgccga ggcggcgaac gcgcccgagg acaagcgcca ggaactctac agccgggtgc
      301 agaagatcct cgtggaggag ctgcccgtcc tgtggctcct ggaactcgat ttcccgacgg
      361 tgtcacgctg caacgtgaag gacctcgtca ccacggcgat cggcgtcaac gacgccatgc
      421 gggacgcatg gaagcagtag cgcggccgcg ctccctcgcg atgccgagac agcaccgcgc
      481 ccgtcatcct ggggcgccgc gaagcggtga accgaggacc cctggggagg tccactggac
      541 cttgagatcc tcgggtctgc gctgcgctcc gccggaggat gacgtcgctg gtgcgtctgc
      601 actatggcgc agcgcctgat gctgcgcttc ctcgcagggc gcgtcgtcaa gggcgtgctc
      661 gtcctcctcg ccatcgcggt gctcaacttc ttcctgatcc gggctgcgcc gggtgacccc
      721 gcgcaggtca tggcggggga ggccggcgcc gccgacgagg tattcctgca gcagctgcgc
      781 gcccgcttcg gcctcgaccg cccgctgctc gagcagctct ggatctatct gcgcgaggtc
      841 gtgagcttcg acctcggctt cagctaccgc cagcagcgac cggtggtgga catcattttg
      901 gagcgcctgc cggcgacgct gctcctcacc ggcgcggcct tcgtcgtctc ccttgcgctt
      961 ggcgcgacgc tcggcgccct agcggcgcgg cgggcccggc gctggtcgga cactgcggtc
     1021 accacgggcg cgctcctgtt ctacgcgacg cccctgttct ggatcgccct catggggcag
     1081 atcgtgttct cgctgaagct cgggtggctg ccgaacgtcg gctacgagac catcggcgcc
     1141 aactataccg gcctgaggca tgtgctcgac gtcggcgcgc acctggtgct cccggcgatg
     1201 acgctcggcc tgttcttcac ggcgctctac gcgcgcatga tgcgcgcctc catgctcgag
     1261 gtcgctggca gcgacttcgt caagaccgcc cgagcgaagg ggctgaccga gggcgccgtc
     1321 gtgcgccggc acgtcgcccg caacgccatc ctccccgtgg tgacgctggc cgggctccag
     1381 gccggtcagc tcgtcggcgg agcggtgctg accgagacgg tgttcgcctg gccgggcatc
     1441 ggacgcctca tgttcgacgc cctcgtgcag cgcgactact cggtgctcct cggtgtgttc
     1501 ttcgtgtcgt cggccatggt ggtcgtgttc aacatcgcca ccgacctcgt ctaccgcgcc
     1561 gccgacccgc gcatcgaggt cggagcatga gcttcgtccg gcgtttcgcg cgcaaccgcg
     1621 gcgctgtgat cggctgcctc gtgctgctcg ccgtgatcgt ggtcgcggcg ctcgctcccg
     1681 tcatgtaccc gcaatcgccg tggcgcctcg tcgggcggcc cttcctcgcg ccgttcgccc
     1741 tcgaccgctt tccgctcggc accgatgcgc tcgggcgcga cgtcatggct gggctcatgc
     1801 acggcgcgcg cgtgtcgctg ctcatcgggc tcgtctcgac ggccgtcgcg ctgctcatcg
     1861 gcgtgccgct cggagctctc gccggctacg ccggcgggct cgtcgacgat gccctgatgc
     1921 gtttcaccga gttcttccag acgattccga gcttcgcgct cgccatcgtc atcgtcgcca
     1981 tcctccagcc ttccatcgcc tcgatcgtgc ttgccatcgc gatcgtttca tggccgccga
     2041 tcgcacggct ggtgcgcggc gaggtgctgt cgctgaggag ccgcgagtac gtgcaggcag
     2101 ccatcaccct cgggcagacg acgccgcgca tcctcctcct ccaggtgctg cccaacacgc
     2161 ttgcccccat catcgtcatg gcgtccctga tggtggcgtc ggcgatcctg ctcgaatcgt
     2221 cgctgtcgtt tctcggcctc ggcgatccga gcctgatgac ctggggctac atgatcggcg
     2281 cgggacgcac gcggctcatc gaggcgtggt ggatcagctt cttcccaggc gtcgcgatct
     2341 tcctcacagt gctcgccctc aacctcgtcg gagagggcct caacgacgcc ctcaacccgc
     2401 gtctcgcgcg ggaacgggac tgatggcgcc ggtgctcgag atcgagcggc tgacgctggc
     2461 gttgccggcg atggcggatc gcgcgcacgc cgtgaaggac ctctccctct ccatcgagcc
     2521 gggccagacc ctgtgcgtcg tcggcgagtc gggctcgggc aagtcgatga cggcccatgc
     2581 ggtgatgcgg ctgctgccgc gggcggtgaa gcccgcgggc ggcgccatcc gcctcaacgg
     2641 caccgacctc ctcggcttga gtgacgccgc catgcgcgag gtgcgcggac gcgacatcgg
     2701 catgatcttc caggagccga tgacctcgct caacccggtc atgcgggtcc gggaccaaat
     2761 cgccgagacg ttcgaggcgc atggcgcgct cgaccgcgcc gggcgcatca agcgcgccgt
     2821 tgcgctcctc gaagaggtag ggctgcccga tcccgagcgc ctcgcacgtg cctatccgca
     2881 ccagctctcg ggcggccagc gtcagcgcgt gatgatcgcc atcgcgctgg cactggagcc
     2941 gaaactcctc atcgccgacg aaccgacgac ggccttggac gtgaccacgc aggcccagat
     3001 cctgcgcctg atcgacaacc tgcggaagaa gcacggtacg gcggtgctgt tcatcacgca
     3061 cgacttcggc gtggtggccg agatcgccga tcgggtggcg gtgctgcagg agggtctatg
     3121 cgtcgaggag ggctcggtcg acgatgtcct gacgcgcccc cggcatgcct acaccaagcg
     3181 ccttctcgcc gccgtgccgt cgctcgtgcc gccagctccg aaggtgcttg cggaagccga
     3241 gccctccctt cgtgtcgagc atctctccaa ggtctaccgc ggccgtggcc tgttccggcg
     3301 cgggcgcgag gtgcgcgcgg cggatgacgt gagcttctcc attcgacccg gcgagacgct
     3361 tggactggtc ggcgagtcgg gctccggcaa gtccaccgtc ggccgctgcc tgctgcgcct
     3421 cgtcgagccc gacgcgggtg cgatccgcat cggcgacctc tccgtgcggg agctctcggc
     3481 ggcggccttc cggccgcacc gcaagcgtat ccagatggtg tttcaggacc cgttcgcgtc
     3541 gctcaaccca cggcgcacag tcggccgcat cgtcgccgaa gggccgatcg cgcacgggat
     3601 gccgacccgg gacgctctcg atcgggcacg ggagctgctc ggcttggtcg gcctctccgc
     3661 ttccgcgatc gaccgctatc cgcacgagtt ctccggcggg cagcggcagc gcatcggcat
     3721 cgcgcgtgcc ttggcgctcg agcccgaggt tctcgtcgcc gatgagcccg tgtcggccct
     3781 ggacgtgtcc g
//
LOCUS       DASQWN010000477         2310 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_139994, whole genome shotgun sequence.
ACCESSION   DASQWN010000477 DASQWN010000000
VERSION     DASQWN010000477.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2310)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2310)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2310
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_139994"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..199
                     /locus_tag="VE686_08985"
     CDS             <1..199
                     /locus_tag="VE686_08985"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY84618.1"
                     /translation="ELPARVDDRFAADEEPLPLDDARERVLGADPFPDEPARFDALLA
                     RLEDFGRCDDFCVFWAILTSL"
     gene            complement(213..641)
                     /locus_tag="VE686_08990"
     CDS             complement(213..641)
                     /locus_tag="VE686_08990"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY84619.1"
                     /translation="MATTKSRTAKTSRTRKSTSTGGSRKTAKSGSAAKGRAAAKSRKP
                     AGSRPRKRAAPPSTTEKVVQAVRSAKGPGIAAGAAASVVGGVVLGVRRRRSSKVGFDA
                     RGLMKRLGKTSKGFGKTSKELGKEMQRLGDDAESVGKTLS"
     gene            861..1271
                     /locus_tag="VE686_08995"
     CDS             861..1271
                     /locus_tag="VE686_08995"
                     /inference="COORDINATES: protein motif:HMM:NF024092.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nuclear transport factor 2 family protein"
                     /protein_id="HYY84620.1"
                     /translation="MSQENVEIVRRGYELFAEGNLEGVTDLISDEAELPDGGGLGVGD
                     TAAGTRRGPDGFLQGSQDALDAFEDYRVEPQEFIEAGDAVVVPVRISGRGKASGAMLE
                     IRLVHLWVLRNGRAIRNEIYRTTAEALKAVGRSE"
     gene            1419..1640
                     /locus_tag="VE686_09000"
     CDS             1419..1640
                     /locus_tag="VE686_09000"
                     /inference="COORDINATES: protein motif:HMM:NF039788.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6458 family protein"
                     /protein_id="HYY84621.1"
                     /translation="MYIGTSIFLIGVGAVLAWAVTAEVAGVDVQTAGVILMVVGVIGL
                     IASLLEQTIWADRRRRGVEPDVVREREYR"
     gene            1812..>2310
                     /locus_tag="VE686_09005"
     CDS             1812..>2310
                     /locus_tag="VE686_09005"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY84622.1"
                     /translation="MKVLGGIAAAVVVLLVAPSTGVAQTKLPVGEAHGVRIVREHGAI
                     VVVFTPRAAKLYKQIAGRLVTVDCSDQDPRQRSPLADTGGLDPLRAEGDYPVTMRAPK
                     HRRKLVTGDRNRGMDYCDVMLGAQTGTRGGKRHRIGPRLIVSVPLTQPGAVFVDERSK
                     AVDLVG"
BASE COUNT          339 a          762 c          808 g          401 t
ORIGIN      
        1 ggagctgccg gcgcgcgtcg acgaccgctt cgcggcggac gaggaacccc tgccactcga
       61 cgatgcacgc gagcgggtct tgggagccga tccgttcccc gacgagccgg cgcgcttcga
      121 cgcgctgctc gcccggctcg aagacttcgg ccgttgcgac gacttctgcg tgttctgggc
      181 catcctgacc tccctctgat cgatccttgt gactaggaga gcgtcttgcc cacgctctcg
      241 gcgtcgtcgc cgaggcgctg catctccttg ccgagttcct tgctcgtctt gccaaagccc
      301 ttgctcgtct tgccaagccg cttcatcaac ccgcgtgcgt cgaagccaac cttgcttgaa
      361 cggcgcctgc gcacgccgag gacgacgcca ccgacgacgc tggccgcggc accggcggcg
      421 atgccgggtc cctttgcgga gcgaacggcc tgcacgacct tttccgtagt cgacggcggc
      481 gcggcgcgtt tgcgcggccg cgagccggcg ggcttacgcg acttcgcagc ggcgcggccc
      541 tttgccgcac tgccgctctt ggcggtcttt cgactcccac cggtgctcgt ggacttgcgt
      601 gtacggctcg tctttgcggt acgcgacttg gtagtcgcca tatctccctc caatcgggct
      661 cctcgttgcg gtacccactc tgtaaatgcg taacccgatt gggcccgtat gcaggcggct
      721 ttgcgcctgg acgaacgttg cggggtcatc actcgattgg tgaatttcag ccactcaggg
      781 tgacttgaac gcggcggatc gggaacgtca ctgctgcgcc gcctggtcgg cccctccgca
      841 tcgcgggata ctgggcgggc atgtcgcagg agaacgtcga aatcgttcgc cgcggatacg
      901 agctgttcgc cgagggcaac ctcgaaggcg tgacggacct gatctcggat gaggcagagc
      961 tgccggacgg cggtgggctc ggagtcggtg acacggcggc cggtacccgc cgcggccctg
     1021 acgggtttct tcagggctcg caggatgcct tggacgcctt tgaggactac cgcgttgagc
     1081 cgcaggagtt catcgaggcc ggtgacgctg ttgtggtgcc ggttcgcatc tccggccgcg
     1141 ggaaggcgag cggcgcgatg ctggagattc gcctcgtaca cctctgggtg cttcgcaacg
     1201 gcagggcaat ccgcaacgag atctatcgaa cgacggccga agccctcaaa gcggtggggc
     1261 ggtcggagta ggcgatacgg cggcgtaccc ggcgctctga ccgggctgct tatccgaaaa
     1321 ccagctcggc ccggccgacg atgcgtcttc gctcgcacat ccgtcgagcg gagatcgctt
     1381 cgcttggagg acggctccgc cgcgccgaat ggatgggcat gtacatcgga acatccatct
     1441 ttttgatcgg cgtaggtgca gtcctcgcgt gggccgtgac agcagaggtc gccggcgtcg
     1501 acgtgcagac ggccggagtc atcctgatgg tggtcggcgt aatcgggctc atcgcgtcgc
     1561 tgctcgagca gacgatctgg gcagaccggc gccgacgtgg cgtcgagccc gacgtcgtcc
     1621 gcgagcgcga gtaccggtag accggcctcg cctgcggctg gcgcgggcat cgtcaggcca
     1681 gggcgagccg ggccacaaga cggaacgcgg gcccgcgccc acgccggcgt gccgcggtgc
     1741 cgatgcgtcc ggccgcggcc cgaccaagag aagcttgctt ccgatggggc ccggtgggag
     1801 gctgacgcgg tgtgaaggtc ctcggcggca tagcggcggc ggtggtggtc ttgctggtcg
     1861 cgccttcgac cggcgtggcg cagaccaagc tcccggtcgg cgaggcgcac ggcgtgcgca
     1921 tcgtgcgaga gcacggcgcg atcgtcgtgg tcttcacgcc acgggcggcg aagctctaca
     1981 agcagatcgc ggggagactt gtcacggtcg actgctccga tcaggatcct cgtcagcggt
     2041 cgcccctcgc cgacacggga ggtctcgacc ccctccgtgc agagggtgac tatcccgtaa
     2101 cgatgcgtgc gccgaagcac cgccggaagc tggtcaccgg cgaccgcaac cggggcatgg
     2161 actactgcga cgtgatgctc ggggcgcaga ccggcacgcg cggcggcaag cgacaccgca
     2221 tcggccctcg cctgatcgtc tcggtgccac tgacgcagcc tggggccgtc ttcgtcgacg
     2281 agcggtcgaa agcggtcgat ctcgtcggag
//
LOCUS       DASQWN010000478         3129 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1175292, whole genome shotgun sequence.
ACCESSION   DASQWN010000478 DASQWN010000000
VERSION     DASQWN010000478.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 3129)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3129)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3129
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1175292"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(29..1216)
                     /locus_tag="VE686_09010"
     CDS             complement(29..1216)
                     /locus_tag="VE686_09010"
                     /EC_number="2.7.7.65"
                     /inference="COORDINATES: protein motif:HMM:TIGR00254.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GGDEF domain-containing protein"
                     /protein_id="HYY84623.1"
                     /translation="MQFHIPTLFAVTTLVAATVGTLLAIAGLQSRSVRALTWLGVGYI
                     LGAFGAALLSLRGVLPDVVTIQVANAVLFVGHGVLWSGTRVFAARPVRPAIALAGATI
                     WVAACQIPAFYATVNLRVMLASLIVGTYVLAGAYELWRCRSDELRSSRIVVTLLVIHS
                     AFYLVRVPLALVLPLPQDAQALQSAWLAVLTMETILHVIAIGFVFFGLAKDRLELEQR
                     IAATTDPLTGVLNRRGFLSRAEAELAADREAGHPTALLMFDIDHFKRINDCWGHEAGD
                     RALVAFCRVASAQLGPSALFGRIGGEEFACIIKGGDEGWARRAAERVRVALAAAPIDL
                     GGPLLLPTTVSAGVASTAAGRSDVSALMAGADEALYRAKSLGRNRVEGSSRGSAEPRL
                     MAA"
     gene            complement(1322..2482)
                     /locus_tag="VE686_09015"
     CDS             complement(1322..2482)
                     /locus_tag="VE686_09015"
                     /EC_number="1.14.19.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007614281.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0016717 - oxidoreductase activity, acting
                     on paired donors, with oxidation of a pair of donors
                     resulting in the reduction of molecular oxygen to two
                     molecules of water [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA desaturase"
                     /protein_id="HYY84624.1"
                     /translation="MTDAAPKHLEGASADAHDDIVYPSAIPFVLLHLASFAAIWTGVT
                     WQAVAIGVTLYWLRMFAIGAGYHRYFSHRSYSTSRVFQFVLAFLAQTTAQKSILWWAA
                     KHRHHHLFSDTEHDVHSPRHTGFLYSHVGWIFAKRHDETNLVKIADFARYPELMFLHR
                     FELLPAVVLAGVAFLIGGWSGLVVGFVWSTVAVYHGTFCINSLAHVRGRKRYVTGDDS
                     RNNWLLALFTMGEGWHNNHHAYQSSARQGFRWWEIDATYYILKGLSYLGVVWDLKTPP
                     EAVLKNEQQLGARVVDRAAAELVATFNVDRIAAALHASPGLAAVHDRIAAAQHKAADV
                     LASVHLPHVPTREELRAKASSMFAKTRSMEEIVERAHRMILDAVCARLGLAS"
     gene            2655..>3129
                     /locus_tag="VE686_09020"
     CDS             2655..>3129
                     /locus_tag="VE686_09020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019402001.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CoA-binding protein"
                     /protein_id="HYY84625.1"
                     /translation="MSTYRLDKLFAPRSVALVGASPREGSLGRTVLRNLREAGFPGPI
                     GLVNPKYAEIDGIPCVARIEDLPAAPDVVIIAAPPAAVPGIVAAAGDKGAAAAVIITA
                     GMGQGEGSLAHAACMEARRRGLRLVGPNCLGVLAPAAKLNASFAARAARPGDLALI"
BASE COUNT          479 a         1015 c         1193 g          442 t
ORIGIN      
        1 agggttccag cccgttccaa ttattttttc aggcagccat caggcgcggt tcggccgagc
       61 cacggcttga gccctcgacc cggtttcgac ccagcgactt cgcccggtag agcgcctcgt
      121 cggcgccggc catgagggcg gagacgtcgg accggccggc tgcggtgctg gcgaccccgg
      181 cgcttacggt ggtggggagg aggaggggcc caccgagatc gatcggtgca gcggcaagcg
      241 cgacccgcac ccgttcggcc gcgcggcgcg cccagccctc gtcgcccccc ttgatgatgc
      301 aggcgaactc ctcgccgccg atgcggccga agagggcgga cggcccgagc tgcgccgaag
      361 cgacacggca gaaggccacg agcgcacggt ccccggcctc gtggccccag cagtcgttga
      421 tgcgcttgaa atggtcgatg tcgaacatga ggagagccgt cgggtggccg gcctcgcggt
      481 cggcggcgag ttcggcctcc gcgcggctca ggaaaccgcg gcggttgagc actcccgtca
      541 gggggtcggt ggtggcggcg atgcgctgct cgagctcgag gcggtccttg gcgaggccga
      601 agaacacgaa gccgatggcg atgacgtgca ggatcgtctc catggtgagc acggcgagcc
      661 atgcgctttg cagcgcctgc gcgtcctgcg gcaggggaag gacgagggcg agggggacgc
      721 gcacgagata gaaggcgctg tggatgacga gcagcgtcac gacgatccgg ctcgagcgca
      781 gctcgtcgct gcggcagcgc cacagctcat acgccccggc gagcacgtag gtgccgacga
      841 tcagggaggc gagcatcacg cgcagattga cggtggcgta gaaggccggg atctggcacg
      901 cggcgaccca gatcgtggcg ccggcgagcg cgatggcggg ccgcaccgga cgtgccgcga
      961 agacccgggt ccccgaccag aggacgccgt gacccacgaa caggaccgcg ttcgccacct
     1021 ggatggtgac cacgtccggc agcacgcccc gcagcgagag cagcgccgca ccgaaggccc
     1081 cgaggatgta gccgacgccg agccaggtga gggcgcggac gctccggctt tgcagccccg
     1141 cgatcgccag gagggtgccg acggtggcgg cgacgagggt ggtcaccgcg aaaagggtcg
     1201 gtatgtggaa ctgcatctgc cccgtccttg ggggcggttc gtgccgcccc tctgcgagac
     1261 accatggcag aggcccgtga ggctcccgtt cgcgggatgc ctcgactttt agcgatcgcg
     1321 cttacgaagc gaggccgagg cgggcgcaga cggcgtcgag gatcatgcgg tgcgcgcgct
     1381 cgacgatctc ctccatggag cgcgtcttgg cgaacatgga gctcgccttg gcgcgcagct
     1441 cctcgcgggt cgggacgtgc ggcaggtgca cgctcgcgag cacgtcggcc gccttgtgct
     1501 gcgccgccgc gatcctgtcg tggacggccg cgaggccggg ggaggcgtgc agcgccgccg
     1561 cgatgcggtc gacgttgaag gtcgcgacga gttcggccgc ggcgcggtcg acaacgcggg
     1621 cgccgagctg ctgctcgttc ttcaggaccg cctcgggcgg cgtcttcagg tcccacacga
     1681 cgccgaggta cgagagcccc ttgaggatgt agtaggtcgc gtcgatctcc caccagcgga
     1741 agccctggcg ggcgctcgac tggtaggcgt ggtggttgtt gtgccagcct tcgcccatgg
     1801 tgaagagggc gagcagccag ttgttgcggc tgtcgtcgcc ggtgacgtag cgcttgcgtc
     1861 cgcgcacgtg ggcgagcgag ttgatgcaga aggtgccgtg gtagacggcg accgtgctcc
     1921 acacgaagcc gacgacgagg ccggaccagc cgccgatcag gaaggcgacc ccggcgagca
     1981 cgaccgccgg caaaagctcg aagcggtgca ggaacatcag ctccgggtag cgcgcgaagt
     2041 cggcgatctt cacgaggttg gtctcatcgt ggcgcttggc gaagatccag ccgacgtggc
     2101 tgtacaggaa gcccgtgtgc cggggcgaat ggacatcgtg ctcggtgtcg gagaagaggt
     2161 ggtggtggcg gtgcttcgcg gcccaccaca ggatgctctt ctgcgccgtg gtctgggcca
     2221 ggaacgcgag cacgaactgg aacacccggc tcgtcgagta cgagcggtgc gagaagtagc
     2281 ggtggtagcc cgccccgatg gcgaacatgc gcagccagta aagcgtgacg ccgatcgcca
     2341 ccgcctgcca ggtcacgccg gtccagatcg ccgcgaagga ggcgagatgg aggaggacga
     2401 agggaatcgc ggacgggtag acgatgtcgt cgtgcgcgtc ggcggaggca ccctcgaggt
     2461 gcttcggggc agcgtcggtc atgggagggc gagtgtgcct tgggcgtgag ggagaggccg
     2521 ggattcgtcc ccggcgggcc tgcgtcaggt gcttatcgga agccacgatg tcaatctcgt
     2581 ggcgccgacg ccgccgccgg gccgattgcg cgcccggagc gttcgaggat tattgccgcc
     2641 gattcggagg ggccatgtcc acctaccgcc tcgacaagct gttcgcgccg cgctcggtgg
     2701 cgctcgtcgg cgcgagcccg cgcgaaggct cgctcgggcg cacggtgctg cgcaacctgc
     2761 gcgaggcggg cttcccgggc ccgatcggcc tcgtcaaccc gaagtacgcc gagatcgacg
     2821 gcattccctg cgtcgcgcgc atcgaggacc tgcccgcggc gcccgacgtc gtcatcatcg
     2881 cggcgccccc cgccgccgtg ccggggatcg tcgccgccgc gggcgacaag ggggccgccg
     2941 ccgccgtcat catcacggcc gggatggggc agggggaggg ttcgctcgcc cacgccgcct
     3001 gcatggaggc gcggcggcgc ggcctgcgcc ttgtcgggcc gaactgcctc ggcgtgctgg
     3061 cgcctgcggc gaagctcaac gcgagctttg cggcccgggc ggcgcggccc ggcgaccttg
     3121 cgctgatct
//
LOCUS       DASQWN010000479         2998 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_934540, whole genome shotgun sequence.
ACCESSION   DASQWN010000479 DASQWN010000000
VERSION     DASQWN010000479.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2998)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2998)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2998
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_934540"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            85..1317
                     /locus_tag="VE686_09025"
     CDS             85..1317
                     /locus_tag="VE686_09025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006018886.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PLP-dependent aminotransferase family protein"
                     /protein_id="HYY84626.1"
                     /translation="MNAGESSVFQSAFKPGLPPAAPRFTGLPRYNFVYGHNDPEQVPA
                     HELADAAASVLNANGHLLGMYNLGQGPQGHRGLREFVAAKLGARSGISCTADDVLLTS
                     GSLQGMDLVNGVLVGPGDTVILEEFTYGGAITKIQRLGAKVVAAPLDGDGIRMDALRT
                     ILERLRGEGVTPKYIYTIPTVQNPTGTIMPLARRHELLKLSREFGVPVFEDECYADLV
                     WEGSRPPALYALDPAQVVHIGSFSKSLAPALRIGYLVAQWPVLSQIIGTKTDAGSGAL
                     EQMVVAEYLRDNFDSHVTELTGALHGKLETIVDALAQEFGIAVEMFVPKGGIFLWLKL
                     PDHVDVRTFAQAALQQGLAFNPGPEWACDPEAAKSHIRLCFALPTKEDIRAGVAELAR
                     ISFEHTGVPERSANRARA"
     gene            1339..1647
                     /locus_tag="VE686_09030"
     CDS             1339..1647
                     /locus_tag="VE686_09030"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004128342.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004497 - monooxygenase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="putative quinol monooxygenase"
                     /protein_id="HYY84627.1"
                     /translation="MVHVLAIITAKPGMREKILEAFRANMPAVHAEDGCVEYVPTIDA
                     DGSPTKFGDDTFVVVEKWETADALKAHAASPHMAAYAAKVKDMIASRVIHVLTPADAG
                     "
     gene            2005..>2998
                     /gene="recA"
                     /locus_tag="VE686_09035"
     CDS             2005..>2998
                     /gene="recA"
                     /locus_tag="VE686_09035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009489491.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0008094 - ATP-dependent activity, acting
                     on DNA [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA];
                     GO_process: GO:0009432 - SOS response [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase RecA"
                     /protein_id="HYY84628.1"
                     /translation="MSPAALKLVDTSSMDKEKSKALDAALSQIERAFGKGSIMRLGKG
                     QQPVEIETVSTGSLGLDIALGVGGLPRGRVIEIYGPESSGKTTLALHTIAEAQKGGGV
                     CAFVDAEHALDPVYARKLGVNLDDLLISQPDTGEQGLEIADTLVRSGAVDVLVVDSVA
                     ALTPKAELDGEMGDVQPGLQARLMSQALRKLTGSISRSKTMVIFINQIRMKIGVMYGS
                     PETTTGGNALKFYASVRLDIRRVSTLKERDEATGNQVRVKVVKNKVAPPFKQVEFDIM
                     FGEGISKVGELIDLGVKAGMVEKSGSWFSYDSQRLGQGRENAKAFLRENPDIANR"
BASE COUNT          506 a         1060 c          987 g          445 t
ORIGIN      
        1 cggtcgcgcc tgcaggcgcg accctcccct cgccgggagg gatgagcgcg tagcgtcggc
       61 gcaggcgccg aagaggatgt cacgatgaat gctggtgaga gctcggtctt ccagtccgcc
      121 ttcaagccgg ggctgccgcc cgcagcgcca cggttcaccg ggttgccgcg ctacaatttc
      181 gtctacggcc acaacgatcc ggagcaggtg ccggcgcacg agctcgccga cgccgcggca
      241 tcggtgctca acgccaacgg ccatcttctc ggcatgtaca acctcggcca ggggccgcag
      301 ggacaccgcg gcctgcggga gttcgtggcg gcgaagctcg gcgcgcgcag cgggatttcg
      361 tgcactgcgg acgacgtgct cctcacctcg ggctcgttgc agggcatgga cctcgtcaac
      421 ggcgtgctcg tcgggccggg cgatacggtg atcctcgagg agttcaccta tggcggcgcc
      481 atcaccaaga ttcagcgcct cggcgccaag gtggtcgcgg cgcccctcga cggggacggc
      541 atccgcatgg acgccttgcg caccatcctc gagcgcctgc gcggcgaggg cgtcacgccg
      601 aagtacatct acaccatccc gacggtgcag aacccgaccg gcaccatcat gccgctcgcg
      661 cgccggcatg agctcctgaa gctgtcgcgc gagttcgggg tgccggtctt cgaggacgag
      721 tgctacgccg acctcgtctg ggagggctcc cgcccgccgg cgctctacgc cctcgacccg
      781 gcccaggtgg tgcacatcgg ctcgttctcg aagtccctcg cgcccgcgct ccgcatcggc
      841 tacctcgtcg cgcagtggcc ggtgctgagc cagatcatcg gcaccaagac cgatgccggc
      901 tcgggcgcgc tcgagcagat ggtcgtcgcc gagtacctgc gcgacaactt cgacagccat
      961 gtcacggagc tgaccggcgc cctgcatggg aagctcgaga ccatcgtcga cgccctagcg
     1021 caggaattcg gcatcgccgt cgagatgttc gtgcccaaag gcggcatctt cctgtggctc
     1081 aagctccccg accacgtcga cgtgcgcacc ttcgcgcagg ccgccctgca gcaaggcctc
     1141 gccttcaacc ccgggcccga gtgggcctgc gatccggaag ccgcgaagag ccacatccgc
     1201 ctgtgcttcg cgctgccgac gaaggaggac atccgcgccg gcgtcgccga gctcgcccgc
     1261 atctcgttcg agcacaccgg cgtgccggag cgcagcgcca accgcgcccg cgcttaaccg
     1321 ctctagagga gtcgtcccgt ggtccacgtc cttgccatca tcaccgccaa gcccggcatg
     1381 cgggagaaga tcctggaggc attccgggcc aacatgccgg ccgtgcacgc cgaggacggc
     1441 tgcgtcgagt acgtcccgac gatcgacgcc gacggctcgc cgacgaagtt cggcgacgac
     1501 accttcgtgg tggtcgagaa gtgggagacc gcggacgcct tgaaggcgca cgccgcgtcg
     1561 ccgcacatgg ccgcctatgc ggccaaggtg aaggacatga tcgcgagccg cgtcatccac
     1621 gtgctgacgc cggccgacgc gggctgacgc tcgggcggag caccgccaag cgccggcccg
     1681 ggttggaccc tggtcccggg ccggcgcgcg gcgctgcggc agccatggct cggccgcatc
     1741 acgcgcgcga cgttgcagca gggggccggc ggcgcattca cccaggctag tccggaacgc
     1801 tttcccgcgc ccgatgcggc gcggccacac cgagggccgc ggcacagccg ctgcacgacc
     1861 ggttctcacc gccaagccgc attttttctg tgcggaacga aaaaagaact tgccgaacgg
     1921 aacaaatcag gtacgatcgc tcaatcagcc gcgcccgccc gcgttgagac tcgactgctc
     1981 cccgtgccat aaggatgtca ggccatgtcg ccagccgctt tgaaactcgt ggatacttca
     2041 tcgatggata aggaaaagtc gaaggcactc gacgcggcgc tctcgcagat cgagcgggct
     2101 ttcggcaagg gctcgatcat gcgcctcggc aaggggcagc agccggtcga gatcgagacg
     2161 gtgtccacgg gctcgctcgg cctcgacatc gcactcggtg tcggcggcct gccgcgcggc
     2221 cgcgtcatcg agatctacgg ccccgagtcc tcgggcaaga ccacgctcgc gctccacacc
     2281 attgcggagg cccagaaggg cggcggcgtc tgcgccttcg tcgatgccga acatgcgctg
     2341 gatccggtct atgcccgcaa gctcggggtg aacctcgacg acctcctgat ctcgcagccg
     2401 gacacgggcg agcagggcct cgagatcgcc gacaccctcg tgcgctcggg cgccgtcgac
     2461 gtgctcgtgg tcgattcggt cgcggcgctg acgccgaagg ccgagctcga cggcgagatg
     2521 ggcgacgtgc agccgggcct ccaggcccgc ctcatgagcc aggccctgcg caagctcacg
     2581 ggctcgatct cgcgctccaa gaccatggtc atcttcatca accagatccg catgaagatc
     2641 ggcgtcatgt acggctcgcc cgagaccacg acgggcggca acgcgctcaa gttctacgcc
     2701 tccgtgcgcc tcgacatccg ccgcgtctcc accctcaagg agcgcgacga ggcgaccggc
     2761 aaccaggtcc gcgtcaaggt ggtgaagaac aaggtcgcgc ccccgttcaa gcaggtcgag
     2821 ttcgacatca tgttcggcga gggcatttcg aaggtcggcg agctcatcga cctcggcgtc
     2881 aaggccggca tggtcgagaa gtcgggctcg tggttctcct acgacagcca gcgcttgggc
     2941 caaggccgcg aaaacgccaa ggcgttcctg cgcgagaacc cggatatcgc gaacagga
//
LOCUS       DASQWN010000480         3299 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1175340, whole genome shotgun sequence.
ACCESSION   DASQWN010000480 DASQWN010000000
VERSION     DASQWN010000480.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 3299)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3299)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3299
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1175340"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            2..670
                     /locus_tag="VE686_09040"
     CDS             2..670
                     /locus_tag="VE686_09040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015821640.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="XdhC family protein"
                     /protein_id="HYY84629.1"
                     /translation="MNAERAARRAAVLVTEIETGEQRLVRETDVTGDALAEPITDRLR
                     LGKSGLVEAQGRQYFLTVQAPPVKAIVVGAVHISQALAPIARVLDLDVIIVDPRTAFA
                     TPERFPGVPVLAEWPEEVLPRLGLDRYTALVALTHDPKIDDPALTAALRAECFYIGAL
                     GSKKTHGRRVERLTAAGFTQAEIARIQAPIGLDIGAVSPAEIAVSILGEIVAALRRDR
                     RRAP"
     gene            667..1695
                     /locus_tag="VE686_09045"
     CDS             667..1695
                     /locus_tag="VE686_09045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015928438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin-binding protein"
                     /protein_id="HYY84630.1"
                     /translation="MRFGPLAIDEAVGAIAAHTVRAGEVVLKKGSPLTAETAGRLKAA
                     GVESIVAVQLDPGDVGEDEAALRLAQAVAGDAVTVERPFTGRSNLYARKAGVLVVDKA
                     GIDRINAVHEAITVATLPAFKPVVEGEMIGTVKIIPYAVPGGVLDEALACVREVPGAA
                     IRVAPYRAARLAVISTILPGLKPSVIDKTVRVLRERIAASGAEIVHEARVAHDADHLE
                     DELRRARQKAPDLTIVFGASAIADRRDVIPAALEGAGGRVEHFGMPVDPGNLLLVGAL
                     GDKPVLGAPGCARSPKENGFDWVLHRLLAGLPVTRADIMGLGVGGLLMEIVSRPQPRQ
                     GGTPKEEG"
     gene            1707..2273
                     /locus_tag="VE686_09050"
     CDS             1707..2273
                     /locus_tag="VE686_09050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012320407.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotidyltransferase family protein"
                     /protein_id="HYY84631.1"
                     /translation="MILAAGRGTRFGSEPKLLAELAGKPLVRHVADAALASKASLVIA
                     VLGHRREEVGAALPLAVSRVENPDYADGLATSLKAGFAALAGHAEAAVVLLGDMPEIT
                     PQLIDRLIEAWAVRGRPAAVVPTYDGRRGNPVLLSGALAPEIAKLWGDTGAGALLRAR
                     SDVHELPVTAASILADVDTPAALAALRG"
     gene            complement(2270..3124)
                     /locus_tag="VE686_09055"
     CDS             complement(2270..3124)
                     /locus_tag="VE686_09055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012252746.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016742 - hydroxymethyl-, formyl- and
                     related transferase activity [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="formyltransferase family protein"
                     /protein_id="HYY84632.1"
                     /translation="MRFAFAGIDFLGDVFLTLLDRGWTPVKLFTRPCDKVYDFNETVI
                     ARARSLNIPIQLSRIRPPDLASLPSLRCEALIVAGYPWLVTGWEAHLPYAVNVHPSPL
                     PIGRGPYPLFQAILSGATEWGITAHKLAPSFDTGAIVAQERFPVAPNETHDSLLAKCQ
                     MGAKRLATTLASELPVLWDTAEPQGEGSYWPRVAEGERTLDWTRSVAEVLRTVRAFGS
                     IEAIAPLDKTRVYVRAATGWTEAHRVKPGTLVHSHRRHLVVAVRDGFVQLTAWSPVPL
                     EQARDFGR"
BASE COUNT          469 a         1172 c         1206 g          452 t
ORIGIN      
        1 cctgaacgcc gagcgcgccg cccggcgcgc cgccgtgctc gtcaccgaga tcgagaccgg
       61 cgagcagcgc ctcgtccgcg agacggatgt tacgggtgat gccctcgccg agcccatcac
      121 ggaccgcctg cgcctgggca agagcggcct cgtcgaggca cagggtcggc agtatttcct
      181 gaccgtgcag gccccgcccg tgaaggccat cgtcgtcggc gcagtgcaca tcagccaggc
      241 gctcgccccg atcgcgcgcg tgctcgacct cgacgtcatc atcgtcgatc cgcgcacggc
      301 cttcgcgacg cccgagcgct tccccggcgt gccggtgctc gccgagtggc ccgaggaggt
      361 gctgccgcgc ctcggcctcg accgctacac ggcgctcgtg gcgctcacgc acgacccaaa
      421 gatcgacgat ccggcgctga cggcggcgct tagggccgag tgcttctaca tcggggcgct
      481 aggctcgaag aagacgcacg ggcggcgcgt cgagcgactc accgcggcgg gcttcacgca
      541 agccgagatc gcgcgcatcc aggccccgat cggcctcgac atcggcgccg tgagcccggc
      601 cgagatcgcg gtctccatcc tcggcgagat cgtggcggcc ctgcgccggg accgcaggcg
      661 ggccccatga ggttcgggcc cctcgccatc gacgaagccg tgggtgccat cgccgcccac
      721 accgtgcgcg ccggcgaggt cgtcctgaag aagggcagcc cgctcacggc cgagaccgcg
      781 ggccggctca aggccgcggg cgttgagagc atcgtcgccg tgcagctcga ccccggcgac
      841 gtcggcgagg acgaggccgc gctgcggctc gcccaggcgg tcgcgggcga cgccgtcacc
      901 gtggagcggc ccttcacggg acgctccaac ctctacgccc gcaaggccgg cgtgctggtg
      961 gtcgacaagg ccgggatcga ccgcatcaac gccgtccatg aggcgatcac cgtcgcgacc
     1021 ctgccggcct tcaagccggt ggtcgagggc gagatgatcg gcaccgtgaa gatcatcccc
     1081 tacgccgtgc cgggcggcgt gctcgacgag gccctcgcct gtgtgcgcga ggtgcccggc
     1141 gccgccattc gcgtcgcgcc ataccgggcg gcgcgactgg ccgtgatctc gaccatcctg
     1201 ccgggactga agccctcggt catcgacaag accgtgcgcg ttctgcgcga gcgcatcgcg
     1261 gcttcgggag ccgagatcgt gcacgaggcg cgcgtagccc acgacgccga tcacctcgag
     1321 gacgagttgc gccgggcgcg ccagaaggcg ccggacctca ccatcgtctt cggcgcctcc
     1381 gccatcgccg accggcgcga cgtgatcccg gccgccctgg agggggcggg agggcgcgtc
     1441 gagcacttcg gcatgccggt cgaccccggc aacctcctcc tcgtcggcgc gctcggggac
     1501 aagccagtgc tcggcgcgcc aggatgcgcg cggagcccga aggagaacgg cttcgactgg
     1561 gtcctgcatc ggctgcttgc cggcttgccg gtgacccggg ccgacatcat gggacttggc
     1621 gtcggcgggc tcctcatgga gatcgtctcg cgtccgcagc cgcggcaggg cgggacgccg
     1681 aaggaggagg ggtgagcgtc gcggcgatga tcctggcggc gggacggggg actcgcttcg
     1741 gatcggagcc gaagctgctc gccgagctcg ccggcaagcc gctcgtccgc cacgtcgcgg
     1801 acgccgcgct cgcctcgaaa gcgtcgcttg tgatcgcggt cctgggacat cggcgcgagg
     1861 aggtaggggc ggcgctgccg ctagccgtga gccgcgtcga gaaccccgat tacgctgacg
     1921 ggctggcgac ctcgctcaag gccgggttcg cagcgctcgc cggacacgcc gaagcggccg
     1981 tcgttctcct cggcgatatg ccggagatca cgccgcaact gatcgatcgg ctcatcgagg
     2041 cctgggcggt gcggggccgt ccagccgccg tggtcccgac gtacgacggc cggcgcggca
     2101 accccgtgct cctgtcgggg gcgctcgcgc ccgagatcgc gaagctgtgg ggcgacaccg
     2161 gcgccggcgc tctgttgcgc gcccgcagcg acgtccacga gctgccggtc acggccgcat
     2221 cgatccttgc cgacgtggac acgcccgcgg cgctggcggc tctgcgaggc tagcgtccga
     2281 agtcgcgggc ctgctcgagc gggaccgggc tccaggcggt gagttgcacg aagccgtcgc
     2341 gcaccgccac gacgaggtgg cgccggtggc tgtgaaccag ggttccgggc ttcaccctgt
     2401 gcgcctcggt ccagcccgtg gcggcgcgca cgtacacccg cgtcttgtcg agcggcgcga
     2461 tagcctcgat tgacccgaag gcgcggaccg tgcgcagaac ctcggcgacg ctcctcgtcc
     2521 agtcgagcgt gcgctcgccc tccgccaccc gcggccagta cgagccctcg ccctgcggct
     2581 ccgccgtgtc ccacaggaca ggcagctcgg aagcgagcgt cgtcgcgagg cgctttgcgc
     2641 ccatctggca tttcgccaaa aggctgtcgt gcgtctcgtt cggcgccacc gggaagcgct
     2701 cctgcgccac gatggcgccg gtgtcgaacg acggggcgag cttgtgggcg gtgatgcccc
     2761 attcggtggc cccgctcagg atcgcctgga acaaggggta ggggccgcgc ccgatcggca
     2821 gcggggaggg gtggacgttg acggcgtacg gcaggtgcgc ttcccagccc gtcacgagcc
     2881 acggatagcc ggcgacgatc agcgcctcgc agcgcaggct cggcagggag gcgaggtcgg
     2941 gcgggcggat gcgcgacagc tggatcggga tgttgaggct gcgcgcgcgg gcgatgacag
     3001 tctcgttgaa gtcgtagacc ttgtcgcacg ggcgggtgaa cagcttcacg ggcgtccagc
     3061 cgcggtcgag caaggtcagg aagacgtccc cgaggaagtc gatgccggca aaggcgaagc
     3121 gcatggggta gctctcggcg cgcggtcaca tgtagcgcgt cgcagccccg gtccaaagct
     3181 ggggtgccct acatctttac gtgaacggac aggccgccgt aggcgccgcc cttcggcgag
     3241 gactcgtccc tgcgccatcc cgtcgagagc cggaacgtga agcgcccgag ctggaggcc
//
LOCUS       DASQWN010000481         2999 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_338951, whole genome shotgun sequence.
ACCESSION   DASQWN010000481 DASQWN010000000
VERSION     DASQWN010000481.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2999)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2999)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2999
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_338951"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1204
                     /locus_tag="VE686_09060"
     CDS             <1..1204
                     /locus_tag="VE686_09060"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003597205.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="glycosyltransferase family 4 protein"
                     /protein_id="HYY84633.1"
                     /translation="HRVTFFASVGPADPRLARVGVNVVCLDQDDIETAASKLAFAAQV
                     MWNTRAATALRDVLAGCYEGDAVVHVHGWAKALSASIGPVLARAGLPTVYTMHEFFLA
                     CPNGGFYDYPAQAICHRKPMSLGCVTRNCDARSYPRKALRLVRHAALGLPSGLRNALR
                     HVILISDLQQSVSAPYFPSGTVFHRVDNPISVPDLGPKPDREPLGEAIFVGRLSTEKG
                     APVFAEAARRAGVRAVFVGGGPSEADLRARYPEAAFLGWKSPDEVRALMRQARALVFP
                     SVWYEGQPLTVYESLAVGTPVIVSDACAGREAVEDGENGFWFRSGDPESLARHLTALS
                     DDTLARRMSRAAHARYWAAPLTMERHLDRLAEVYAAVLRDGAPALSRVAPAAKRPTGA
                     RAAVSIDS"
     gene            complement(1102..2388)
                     /locus_tag="VE686_09065"
     CDS             complement(1102..2388)
                     /locus_tag="VE686_09065"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015822706.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HYY84634.1"
                     /translation="MRAVILADFATPNGGAPKVALESARALAQAGVAVTYVHAIGDEA
                     HPLVDHPGIDRVGLGLSDVWDMPVAKAAGAGIWHREAARRLAGVLGDLPRGRTVLHLH
                     QWTRAFSPSVFPVLMRSGHPLAVTMHDYFLACPNGVYYRFDRAEPCRLTPLSPACLAA
                     PCDPKSALHKAVRVVRTFATRAAVRGGGFDVIHVSDRGRDTIAPFLPAGVRQHRVDNP
                     VQTARAAPATIPDGAKIAYVGRLTREKGADLVAAAAREAGAPVMFIGEGPLEAELRAL
                     DPQAAFLGWRAPADVDRILRTEARAVAAPSRWFETGPLTIYEAMAAGLPAIASARAGA
                     AEKVAHGETGFVVEPTVAALAQAFAALRDTAAAQRMGAAAYARYWDAPPTAEAHAARL
                     IAVYESMLTAARAPVGLLAAGATRDRAGAPSRSTAA"
BASE COUNT          400 a         1109 c         1083 g          407 t
ORIGIN      
        1 ccaccgggtg acgttcttcg ccagcgtcgg tcccgccgac ccgcgcctag cgcgcgtggg
       61 cgtcaacgtc gtctgcctcg accaggacga catcgagacc gccgcgagca agctcgcctt
      121 tgcggcgcag gtcatgtgga acacgcgcgc cgccacggcg ctgcgggacg ttctcgccgg
      181 ctgctacgag ggcgacgcgg tcgtgcacgt ccacggctgg gcgaaggccc tttcggcctc
      241 gatcggcccg gtcctggcgc gcgccgggct gccgaccgtc tacaccatgc acgagttctt
      301 cctcgcctgc ccgaatggcg gcttctacga ctatccggcg caggccatat gccaccgcaa
      361 gcccatgtcg cttggctgcg tcacgcgcaa ctgcgacgcc cgcagctacc cgcgcaaggc
      421 gctccgcctc gtgcgccatg cggcgctcgg gctgccgagc ggcctgcgca acgccctgcg
      481 ccacgtcatc ctcatcagcg atctgcagca gagcgtgtcg gcgccctact tcccgtccgg
      541 cacggtgttc caccgggtcg acaaccccat ctcggtcccc gacctcgggc cgaagccgga
      601 tcgcgagcct ctgggcgaag cgatcttcgt cgggcggctg tcgaccgaga agggcgcacc
      661 cgtcttcgcc gaagcggcgc gccgggccgg cgtgcgggcg gtgttcgtcg gcggcggccc
      721 gagcgaggcg gacctgcggg cgcgctatcc ggaagcggcg ttcctcggct ggaaatcgcc
      781 cgacgaggtg cgcgccctca tgcgccaggc ccgcgccctg gtgttccctt ccgtctggta
      841 cgagggtcag cccctgaccg tgtacgaatc cctcgccgtc ggcacccctg tgatcgtgag
      901 cgacgcctgc gcggggcgcg aggccgttga agacggtgag aacggcttct ggttccgctc
      961 gggcgacccg gagtcactcg cccggcacct gacggcgctc tcggacgaca cgctggcgcg
     1021 ccggatgagc cgggccgcgc acgcccgcta ctgggccgcg cccctcacca tggagcgcca
     1081 cctcgaccgc ctggccgagg tctacgcggc cgtgctgcgg gacggggccc ctgccctgtc
     1141 gcgcgtcgct cctgcggcca agaggccgac gggcgcacgg gccgctgtca gcatcgattc
     1201 gtagacggcg atgagccgcg ccgcgtgcgc ttccgccgtc ggcggcgcat cccagtagcg
     1261 ggcgtaggcc gccgctccca tccgctgcgc ggcggccgta tcgcgaaggg ccgcgaaggc
     1321 ctgcgccagc gccgcgaccg tgggctcgac cacgaacccg gtctcgccgt gcgccacctt
     1381 ctcggcagcc cccgcacgag ccgacgcgat cgccggcagg ccggccgcca tggcctcata
     1441 gatcgtcagc gggccggtct cgaaccagcg cgagggcgcc gcaaccgccc gcgcctcggt
     1501 gcggagaatc cggtcgacgt cggccggagc gcgccagccg agaaacgcgg cctgcggatc
     1561 gagcgcccgg agttcggcct cgagcggccc ctcgccgatg aacatgaccg gcgcacccgc
     1621 ctcgcgcgcc gcggcggcga cgagatcggc ccccttttca cgcgtcaggc gaccgacgta
     1681 ggcgatcttg gcgccgtccg ggatcgtcgc gggagccgcc cttgccgtct gcaccgggtt
     1741 gtctacgcgg tgctggcgca cgccggccgg caggaagggc gcgatggtgt cgcgcccgcg
     1801 gtcggagacg tggatgacat cgaagccgcc gccccgcacc gcggcgcggg tcgcgaaggt
     1861 gcgcacgacc cgcacggcct tgtgcagcgc cgatttcggg tcgcaggggg ccgcgagaca
     1921 ggccggcgac aggggcgtga ggcggcacgg ctcggcgcgg tcgaagcggt agtagacgcc
     1981 gttcgggcag gcgagaaagt agtcgtgcat ggtcaccgcg agcgggtgcc cggagcgcat
     2041 gagcaccgga aacacgctcg gcgagaacgc gcgcgtccac tgatgcagat gcaggacggt
     2101 gcggccgcgc ggcagatcgc cgaggacgcc ggcgagccgg cgcgccgcct cgcgatgcca
     2161 gatgcccgcc ccggccgcct tcgcgaccgg catgtcccag acgtcggata ggccgaggcc
     2221 gacccgatcg atgccgggat gatcgacgag cgggtgcgcc tcgtcgccga tggcgtgcac
     2281 gtacgtgacg gcgacgccgg cctgcgcaag cgcgcgagcc gactcgaggg ccaccttggg
     2341 cgccccgccg ttcggggtgg cgaagtcggc gagaatgacg gcgcgcatcg ctgctcaggg
     2401 ctcctgggcg gcagtgtacc gcagccgcct ttgccgaagt cctaagacga tggcggagaa
     2461 cctcatccct ccccgcgagg ggagggccga gtcgcgcctg caggcgcgac cggggtgggg
     2521 cggaagccct cagcctgacg tcgaagcacg gtggctttcg ccccacccgg gcgggcgctg
     2581 acgcgcccgt ctccgccctc ccctcgcggg gagggattgg ccgtcgcctc aaccgtcgca
     2641 tcgggtgacg ttggagcttt cagcagccct ttcccggacg cctggagcgg agcgtcagcg
     2701 gagtggaagg cgatctggga tccagcgcaa caaagtgcga agcaccgctt tgctcggcgc
     2761 tgaagagcat gcgccgctcc gcggcagagt cgctgcgctg ggtcccgggt tccgttccgc
     2821 ttcgctccac ggccccggga aagggctgct tgagcgtcgc gccatcccgg ttggtaccgc
     2881 tccctacgcc accgtctcgg gatggacgtg gtggccgtcg aggaccacgt gggcgctcgg
     2941 ctcgcccgcc tcgacaggcc cggcccgccg ccgtacgtcc ggcggcaccg cctcggcgg
//
LOCUS       DASQWN010000482         2722 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1275987, whole genome shotgun sequence.
ACCESSION   DASQWN010000482 DASQWN010000000
VERSION     DASQWN010000482.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2722)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2722)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2722
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1275987"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..820
                     /locus_tag="VE686_09070"
     CDS             <1..820
                     /locus_tag="VE686_09070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012043232.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="zinc-binding dehydrogenase"
                     /protein_id="HYY84635.1"
                     /translation="IGGAGTVPGLEWAGEVEEVGAEVTSFRAGDRVMCSGSGGYAEYA
                     ATDHGRASPVPDGMSFETATTLPVALQTMHNAIVTNGRLQRGESILIQGASSGVGLMA
                     LQIAKRRGAGVVIGTSTNADRRARLAEFGATHAIDTSDPSWPDRAREATGGKGVDVII
                     DQVSASVANGNMQAAAVLGRIVNVGRLGGSKGEFDYDLHALKRISYIGVTFRTRSVEE
                     VREINRLMRDELWDAVAAGELRLPIDRSFALSDVKAALAHMKVNQHFGKILLIP"
     gene            938..1996
                     /locus_tag="VE686_09075"
     CDS             938..1996
                     /locus_tag="VE686_09075"
                     /inference="COORDINATES: protein motif:HMM:NF024808.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="extracellular solute-binding protein"
                     /protein_id="HYY84636.1"
                     /translation="MIRRLDATRRTVLKGAGALAAASALPAFAAEMSPREKELYEAAK
                     KEGELTWYTAHSDDVTAQALGREFEKIYPGVKVNVVRTTAQVAFQRVTQEVRAGAMQV
                     DVLSSTDLGHYVSLKEKNLLERYVPENAAKAIDVYKNSDPDGLFYVTAAGLIGISYNT
                     TKLKEEEVPKTWPELLDPKWKDKISTGHPGFSGYVGTWVVTMRKLYGWDFFEKLAKNN
                     PQVGRSINDTVTMLNAGERIVAAGPVGTTMDSAKKGNPLAMVYPSDGSVLIIAPSGIM
                     KGVKHPNAAKLFMEYLLSPPASQVWVEHYGESIRPEVSPLPGVKSAKDIKVVNPSVEE
                     VSKGIPEVIKAWRDTFGV"
     gene            2019..>2722
                     /locus_tag="VE686_09080"
     CDS             2019..>2722
                     /locus_tag="VE686_09080"
                     /inference="COORDINATES: protein motif:HMM:NF012738.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease subunit"
                     /protein_id="HYY84637.1"
                     /translation="MATNLDALPAAAPAAAGGLRQRIRLLEPSMILWIVLIAVLVFLV
                     ASPIVRLVVSSFQEAETGRLTLANYAEAYGRPRHLQALVNSLHLGVGVALLAGLFGVP
                     IAWAISRTDMPAKGFVRIMVFGAFITPPYLGAVGWILLAGPNAGWLNKVWMGLTGAST
                     GIVNVYSMTGLIVVIATTSFPYVFVFVNSALDLVSSEMEDAANILGAGTMRTTFRITL
                     PLVFPAIIGGLIISFL"
BASE COUNT          460 a          961 c          895 g          406 t
ORIGIN      
        1 catcggcggc gccggcacgg tgccggggct ggagtgggcg ggcgaggtcg aggaggtcgg
       61 cgcggaggtg acgagcttcc gcgcgggcga tcgcgtcatg tgctccggca gcggcggcta
      121 tgccgagtac gccgcgaccg accacggccg cgcctccccc gtgcccgacg gcatgtcgtt
      181 cgagaccgcg acgacgctgc cggtcgcgct gcagaccatg cacaacgcga tcgtcaccaa
      241 cgggcgcctg cagcggggcg agagcatcct gatccagggc gcgagctccg gcgtcggcct
      301 catggccctg cagatcgcca agcgccgcgg cgccggcgtg gtgatcggca cctcgaccaa
      361 tgcggaccgg cgtgcgcgcc tcgccgagtt cggcgccacg cacgccatcg acacctccga
      421 tccgtcctgg cccgacaggg cgcgcgaggc gacgggcgga aaaggcgtcg acgtcatcat
      481 cgaccaggtc tcggcctctg tcgccaacgg caacatgcag gccgccgcgg tcctcgggcg
      541 catcgtcaac gtcggccggc tcggcggctc caagggcgag ttcgactacg acctgcacgc
      601 cctcaagcgc atcagctaca tcggcgtcac cttccgcacg cgctccgtcg aagaagtgcg
      661 cgagatcaac cgcctgatgc gcgacgagct ctgggacgcc gtcgctgcag gcgagctgcg
      721 cctgcccatc gaccgctcgt tcgccctcag cgacgtaaag gcggcgctcg cccacatgaa
      781 ggtgaaccag cacttcggca agatcctgct cattccgtga ggggcctccc tcccccgctg
      841 cgcggcgagg accaggcctg cgtcacgggg tctggacgga tgggcccgcc gctgcaagca
      901 tggggcaacg acaacaagtc gatccgggag aaacgccatg atccgtcgcc tcgatgcgac
      961 ccgccgcacc gtgctcaaag gggccggagc ccttgccgcc gcatccgccc tgccggcctt
     1021 cgcggccgag atgagccccc gcgagaagga gctctacgag gcggccaaga aagagggcga
     1081 gctgacctgg tacacggcac attccgacga cgtgaccgcg caggccctcg ggcgcgagtt
     1141 cgagaagatc taccctggcg tcaaggtgaa cgtcgtgcgc acgaccgcgc aggtggcgtt
     1201 ccagcgcgtg acgcaggagg tgcgcgccgg cgccatgcag gtcgacgtcc tgagctcgac
     1261 cgacctcggc cactacgtct ccctcaagga gaagaacctt ctcgaaaggt acgtgcccga
     1321 gaacgccgcg aaggcgatcg acgtctacaa gaactccgac cccgacggcc tgttctacgt
     1381 gaccgcggcg gggctcatcg gcatcagcta caacacgacg aagctcaagg aggaggaggt
     1441 cccgaagacc tggcccgagc tcctcgaccc gaagtggaag gacaagatct cgaccggcca
     1501 tcccggcttc agcggctacg tcggcacctg ggtggtgacg atgcgcaagc tctacggctg
     1561 ggacttcttc gagaagctcg ccaagaacaa cccgcaggtc gggcgttcca tcaacgatac
     1621 ggtcaccatg ctgaacgcgg gcgagcgcat cgtcgccgcc ggtcccgtgg gcacgaccat
     1681 ggacagcgcc aagaagggca acccgctggc gatggtctac ccgagcgacg gctcggtgct
     1741 gatcatcgcc ccgtccggga tcatgaaggg cgtgaagcac ccgaacgccg cgaagctctt
     1801 catggagtac ctgctgagcc cgcccgcctc gcaggtgtgg gtcgagcact acggtgagtc
     1861 gatcaggccc gaggtgagcc cccttcccgg ggtgaagtcc gccaaggaca tcaaggtggt
     1921 gaacccgagc gtcgaggaag tctccaaggg catcccggaa gtgatcaagg cctggcgcga
     1981 caccttcggc gtctgagtca gggcggccgt tcccggcgat ggcaacgaac ctcgacgcgc
     2041 tcccggctgc ggcgcccgcc gccgccggcg gcctgaggca gcggatccgg cttctcgagc
     2101 cgagcatgat cctgtggatc gtgctcatcg cggtgctcgt gttcctggtg gcgagcccga
     2161 tcgtgcggct cgtcgtgtcg agcttccagg aagccgagac cgggcgcctc acgctcgcca
     2221 actacgccga ggcctacggc cgcccgcggc acctgcaggc gctcgtcaac tccctccacc
     2281 tcggcgtcgg cgtggccctg ctcgcagggc tgttcggcgt gccgatcgcc tgggcgatct
     2341 cgcgcaccga catgcccgcc aagggcttcg tgcgcatcat ggtcttcggc gccttcatca
     2401 ccccgcccta tcttggcgcg gtcggctgga tcctgctcgc aggaccgaac gccggatggc
     2461 taaacaaggt ctggatgggg ctcacgggag cctcgaccgg catcgtcaac gtctactcga
     2521 tgacgggcct catcgtcgtc atcgccacga cgtcgttccc ctacgtcttc gtcttcgtca
     2581 actcggccct cgacctcgtc tcgtccgaga tggaggacgc cgcgaacatc ctcggcgccg
     2641 gcacgatgcg cacgacgttc cggatcacgc tgccgctcgt ctttccggcc atcatcggcg
     2701 ggctgatcat cagcttcctc ga
//
LOCUS       DASQWN010000483         2101 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1276075, whole genome shotgun sequence.
ACCESSION   DASQWN010000483 DASQWN010000000
VERSION     DASQWN010000483.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2101)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2101)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2101
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1276075"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            137..496
                     /gene="flgB"
                     /locus_tag="VE686_09085"
     CDS             137..496
                     /gene="flgB"
                     /locus_tag="VE686_09085"
                     /inference="COORDINATES: protein motif:HMM:TIGR01396.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009429 - bacterial-type flagellum basal
                     body, proximal rod [Evidence IEA];
                     GO_function: GO:0005198 - structural molecule activity
                     [Evidence IEA];
                     GO_process: GO:0001539 - cilium or flagellum-dependent
                     cell motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body rod protein FlgB"
                     /protein_id="HYY84638.1"
                     /translation="MALFDTTQLGLERAISGAAMRQNALAANLANANTPGYKPKDVDF
                     HSALRSAFAAGASGEEVSRTAFAESTQTGVVRADGSAVDVDVESAKLSENALEYQTLV
                     QVARGRIDILKSAMGVG"
     gene            496..933
                     /gene="flgC"
                     /locus_tag="VE686_09090"
     CDS             496..933
                     /gene="flgC"
                     /locus_tag="VE686_09090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019963550.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009425 - bacterial-type flagellum basal
                     body [Evidence IEA];
                     GO_function: GO:0005198 - structural molecule activity
                     [Evidence IEA];
                     GO_process: GO:0001539 - cilium or flagellum-dependent
                     cell motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body rod protein FlgC"
                     /protein_id="HYY84639.1"
                     /translation="MSIFGSLDISASALSAERLRMDVTAENLANAQSTRTADGGPYRR
                     KEVVLQQSGGGFAGALAAARSADGPNGGVRVSGIVEDTAPDRLVYDPGHPDANQQGYV
                     RMPNVNPVTEMVDLISASRSYEANVTAMQTAKQMFTKTLDLLR"
     gene            933..1262
                     /locus_tag="VE686_09095"
     CDS             933..1262
                     /locus_tag="VE686_09095"
                     /inference="COORDINATES: protein motif:HMM:NF014143.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-basal body complex protein FliE"
                     /protein_id="HYY84640.1"
                     /translation="MPAIDPTLAVGGTEWSIGPVEGFGSEGATAPATGAEGSQFGGLL
                     ADQVGKLAALQDDAATASRDLASGTATDPAATVMTIERARLSMQLAAQIRTKGVEALQ
                     EIFHTSV"
     gene            1290..>2101
                     /gene="fliF"
                     /locus_tag="VE686_09100"
     CDS             1290..>2101
                     /gene="fliF"
                     /locus_tag="VE686_09100"
                     /inference="COORDINATES: protein motif:HMM:TIGR00206.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009431 - bacterial-type flagellum basal
                     body, MS ring [Evidence IEA];
                     GO_function: GO:0005198 - structural molecule activity
                     [Evidence IEA];
                     GO_process: GO:0001539 - cilium or flagellum-dependent
                     cell motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal-body MS-ring/collar protein
                     FliF"
                     /protein_id="HYY84641.1"
                     /translation="MPFKTLLANTTPKGRIVLGASAVGLVVLMFVMFKLASAPSYATM
                     LTGLDPAETGKITAALDEKGVAYELKNNGTALAVDKASVPQARIALAEKGLPGKGQPG
                     FELFDKQKLGASDFQQKVTYQRALEGQIASTIQQVQGVSGAQVSLVLPEDQLFAEEQT
                     PATAAVLLSGGSSSLDPAAVRGIASLVSSSVKGLKPQNVSITDSTGQLIWPNSESSAE
                     NGGGVSKLTAQARYDAQLQGSLDAMLTQTVGAGKARVKVSSDLNVDQSTQDKL"
BASE COUNT          350 a          822 c          676 g          253 t
ORIGIN      
        1 cccgcgcggg cgccaagccg ccctgcgcca cggacgcggc gctcaagtat ctcggcgaat
       61 cgccgatgac cttgacggcc cccaaggatg ggagccatgg acagtccacg gacggacgcc
      121 ccgacaagga gccccgatgg cactgttcga caccacccaa ctcggcctgg agcgcgcgat
      181 ctccggcgct gccatgcgcc agaacgcgct ggcggccaac ctcgccaacg ccaacacgcc
      241 cggctacaag ccgaaggacg tggacttcca cagcgccctg cgcagcgcct tcgcggccgg
      301 cgcgagcggc gaggaggtca gccgcaccgc gttcgccgag tcgacgcaga ccggcgtcgt
      361 gcgcgcggac ggcagcgccg tcgacgtgga cgtcgagtcg gccaagctct ccgagaacgc
      421 cctcgagtac cagaccctgg tccaggtcgc gcgcgggcgc atcgacatcc tcaagtccgc
      481 gatgggcgtc ggctgatgag catcttcggc tccctggaca tctccgccag cgcgctcagc
      541 gccgagcggc tgcgcatgga cgtgacggcc gagaacctcg ccaacgccca gagcacgcgc
      601 accgccgacg gcggcccgta ccgccgcaag gaggtcgtcc tccagcagtc cggcggcggc
      661 ttcgccggcg ccctggccgc cgcccgctcg gccgacggcc cgaacggcgg cgtgcgcgtc
      721 agcggcatcg tcgaggacac cgctccggac cgcctcgtct acgacccggg ccaccccgac
      781 gccaaccagc aggggtacgt gcggatgccg aatgtaaacc cggtgaccga aatggtcgat
      841 ctgatcagtg cgtcccgttc ctacgaggcc aacgtcaccg cgatgcagac cgccaagcag
      901 atgttcacca agaccctcga cctcctccgc tgatgccggc gatcgacccc acgctcgccg
      961 tcggcggcac cgagtggagc atcggcccgg tcgagggctt cggctccgag ggcgccacgg
     1021 cgcccgcgac cggcgccgag ggctcgcagt tcggcggcct gctcgccgac caggtcggca
     1081 agctcgccgc cctgcaggac gacgccgcca ccgcctcccg cgacctcgcg tcgggcaccg
     1141 cgaccgatcc ggccgcgacc gtcatgacca tcgagcgcgc ccgcctgtcc atgcagctcg
     1201 ccgcccagat ccgcaccaag ggcgtcgagg cactgcagga gatcttccac acgtcggtct
     1261 agccccccac ctgacccccc ggttccccaa tgcccttcaa gaccctcctc gcgaacacca
     1321 cccccaaggg ccgcatcgtc ctgggcgcct cggccgtcgg cctggtcgtg ctgatgttcg
     1381 tgatgttcaa gctcgcctcc gcgccgagct acgccacgat gctcaccggc ctcgacccgg
     1441 ccgagaccgg caagatcacc gcggccctgg acgagaaggg cgtcgcgtac gagctcaaga
     1501 acaacggcac cgccctggcc gtcgacaagg ccagcgtgcc gcaggcgcgc atcgcgctcg
     1561 ccgagaaggg cctgcccggc aagggccagc ccggcttcga gctcttcgac aagcagaagc
     1621 tcggcgcctc cgacttccag cagaaggtca cctaccagcg cgcgctggag ggccagatcg
     1681 ccagcacgat ccagcaggtg cagggcgtgt cgggcgcgca ggtgtcgctc gtgctgcccg
     1741 aggaccagct cttcgccgag gagcagacgc ccgcgaccgc ggccgtcctg ctcagcggcg
     1801 gctccagctc gctcgacccg gcggccgtgc gcggcatcgc ctcgctcgtc tcctcctcgg
     1861 tcaagggcct caagccccag aacgtctcga tcaccgacag caccggccag ctgatctggc
     1921 cgaacagcga gagctccgcg gagaacggcg gcggcgtgag caagctcacc gcccaggccc
     1981 gctacgacgc ccagctgcag ggctcgctcg acgcgatgct cacgcagacg gtcggcgcgg
     2041 gcaaggcgcg cgtgaaggtc tcgagcgacc tgaacgtcga ccagtccacg caggacaagc
     2101 t
//
LOCUS       DASQWN010000484         2164 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_537207, whole genome shotgun sequence.
ACCESSION   DASQWN010000484 DASQWN010000000
VERSION     DASQWN010000484.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2164)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2164)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2164
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_537207"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..131)
                     /locus_tag="VE686_09105"
     CDS             complement(<1..131)
                     /locus_tag="VE686_09105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015928422.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribulose-phosphate 3-epimerase"
                     /protein_id="HYY84642.1"
                     /translation="MTRPLVIAPSILSADFANLGEEVRAVDAAGADWIHVDVMDGHFV
                     "
     gene            complement(128..1123)
                     /locus_tag="VE686_09110"
     CDS             complement(128..1123)
                     /locus_tag="VE686_09110"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="Na+-dependent transporter"
                     /protein_id="HYY84643.1"
                     /translation="MPVPRPLSFILDALAWIGRHGTQGFALSIFLGLALPQFAAAARP
                     LLGVSIFCFVTITFARVDSGALRALVARPRPLLLAMAWLIAGPPALVLLGLSVVGRES
                     LDPGLVLGLAMLAGAPPIMSAPAIAMLFGFEPTLIIAAILTTTVLAPVLSPIIADLVA
                     GAAVPLDLTILVWRLVYLIGGAILAAAALRIGLGEARIREHKASFDGFGVVMYFLFAV
                     AAMDGVLAAALTDPGRVARFLAVSFTMALAGFAGAWIALRPLVGADRFVLGYATGQRN
                     MGLLVAALGAATPDTTFLFFALAQFPIYLMPQIIKPIARRLAPLPPSEPRATAPP"
     gene            1240..>2164
                     /locus_tag="VE686_09115"
     CDS             1240..>2164
                     /locus_tag="VE686_09115"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009494122.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0071949 - FAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HYY84644.1"
                     /translation="MAVRTDVVVVGAGIVGVSVAVHLQKRGRAVTLVDRRAPGEETSF
                     GNAGLIQREGVYPYGFPHDFGALLRHALNRGTEAHYHLSALPKLAPFLARYWWASRPT
                     RHERIAREYAPLIEHCLTEHRALADEAGARHLMRPTGWLKLYRTQGIMDQEVREAEEV
                     KRDFGVNFAALDPARLADLEPHLRSDLVGALHWTDPESVSDPHALTLAYAGLFERLGG
                     QFLVGEAASLRQTRAGWSMTTEAGPLEAGVAVLALGPWADVVTKRLGYNLPLAVKRGY
                     HMHYRAAGHAVLNHPVLDHERGYFLAPMKRGI"
BASE COUNT          364 a          737 c          805 g          258 t
ORIGIN      
        1 acgaagtgcc cgtccatgac gtcaacgtgg atccagtcgg cgcccgccgc gtccacggcc
       61 cgcacctcct cgcccagatt ggcgaagtcc gccgacagga tcgagggcgc gatgacgagg
      121 ggccgggtca tggcggcgcg gtagcacgcg gctcggaggg cggcaacggc gcgagccggc
      181 gcgcgatcgg cttgatgatc tgcggcatga gatagatcgg gaactgcgcc agcgcgaaga
      241 acaggaacgt ggtgtcgggc gtcgcggccc cgagcgcagc gacgaggagc cccatgttgc
      301 gctggccggt ggcgtagccg agcacgaagc ggtccgcgcc gacgaggggc ctgagcgcga
      361 tccaggctcc cgcaaacccc gcgagcgcca tcgtgaagga cacggcgagg aagcgggcca
      421 cgcgccccgg gtctgtcaag gcggccgcaa ggacgccgtc catggcggcg acggcgaaca
      481 ggaagtacat caccacgccg aagccgtcga agctcgcctt gtgctcgcga atgcgcgcct
      541 cgcccaagcc gatgcgcagg gcggccgcgg cgaggatcgc tccgccgatg aggtacacga
      601 ggcgccagac gaggatggtg aggtcgaggg gcacggcggc gcccgcgacc aggtcggcga
      661 tgatcggcga cagcacgggt gcgagcaccg tcgtcgtcag gatggccgcg atgatcaggg
      721 tcggctcgaa gccgaacagc atggcgatcg cgggggccga catgatcggc ggcgcgccgg
      781 ccagcatggc gaggccgagc accaggcccg gatcgagact ttcgcggccg accaccgaca
      841 ggccgagaag caccagcgcc ggcggtcccg cgatgagcca ggccatggcg agcaggagcg
      901 gacgcgggcg cgcgacgagg gcccgcaagg cgccggagtc gacgcgggcg aaggtgatgg
      961 tgacgaagca gaagatcgag acgccgagaa gcggccgcgc cgcggcggcg aactgcggca
     1021 gggcgagtcc caggaagatg ctgagcgcga agccttgcgt gccgtggcgg ccgatccagg
     1081 caagcgcgtc gaggatgaag gagagcgggc gcgggacggg caccggcgca atcagcccgg
     1141 ggccgcggcc tgcgtcaacc gtgcccaggc ataaccctgc gtcgctggcc cgaaacaaac
     1201 gtcgccgtta ggttcacggc gccttgaagg aacacggggg tggcggtgcg gacggacgtt
     1261 gtggttgtcg gggccgggat cgtcggcgtg tcggtcgcgg tgcatctgca gaagcgcggc
     1321 cgcgcggtca ccctcgtcga ccgccgcgct cccggcgagg agacctcgtt cggaaacgcc
     1381 ggcctgatcc agcgcgaggg cgtgtacccc tacggcttcc cgcacgactt cggcgcgctc
     1441 ctgcgccacg ccctcaaccg gggcacggag gcgcactacc acctctcggc cctgccgaag
     1501 cttgcgccct tcctggcgcg ctactggtgg gcgtcgcgac cgacgcgaca cgaacggatc
     1561 gcgcgcgagt acgcgccact catcgagcat tgcctgaccg agcaccgggc gctcgccgac
     1621 gaggctggcg cgcgccacct catgcgcccg acgggctggc tcaagctcta ccggacgcaa
     1681 ggcatcatgg accaagaggt ccgcgaggcg gaggaggtga agcgcgactt cggcgtcaac
     1741 ttcgccgcgc tcgacccggc gcgtctcgcc gacttggagc cgcacttgcg gtccgatctc
     1801 gtcggggcgc tgcattggac ggaccccgag tcggtcagcg acccgcacgc gctgacgctc
     1861 gcctacgcgg gcctgttcga gcgcctcggc ggccaattcc ttgtcggcga ggcggcgagc
     1921 ttgcgccaga ccagagccgg atggagcatg accaccgaag cggggcccct tgaagccggc
     1981 gtcgccgtcc ttgctctcgg cccctgggcc gacgtcgtca ccaagcggct cgggtacaac
     2041 ctcccgctcg cggtgaagcg cggctaccac atgcactacc gcgcggcggg ccacgcggtg
     2101 ctgaaccacc cggtgctgga tcacgagcgc ggctatttcc tggcgccgat gaagcgcggc
     2161 atcc
//
LOCUS       DASQWN010000485         2565 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_834905, whole genome shotgun sequence.
ACCESSION   DASQWN010000485 DASQWN010000000
VERSION     DASQWN010000485.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2565)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2565)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2565
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_834905"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..686
                     /locus_tag="VE686_09120"
     CDS             <1..686
                     /locus_tag="VE686_09120"
                     /EC_number="2.3.1.78"
                     /inference="COORDINATES: protein motif:HMM:NF019403.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015019 - heparan-alpha-glucosaminide
                     N-acetyltransferase activity [Evidence IEA];
                     GO_process: GO:0007041 - lysosomal transport [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="heparan-alpha-glucosaminide N-acetyltransferase"
                     /protein_id="HYY84645.1"
                     /translation="AVTIATYFAFPEAYIFFGILHCIAAASVLALPFVFAPAWVTLAV
                     AALVLGARSVIASPEFDAPLLAFVGLGTRVPVTNDYVPLFPYAGLVLAGVAAGRAGAA
                     WLASNAERRWRSTGLVGATLVWAGRHSLPIYLLHQLVLLGALTAIVQVTGPNPAAIEA
                     GFTRDCETSCRPLRDAQTCRAACTCTVARMKQADIWAKAASGRLDADETAQMSGFARQ
                     CLAEPGARP"
     gene            766..1797
                     /locus_tag="VE686_09125"
     CDS             766..1797
                     /locus_tag="VE686_09125"
                     /EC_number="2.5.1.47"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009763015.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine synthase A"
                     /protein_id="HYY84646.1"
                     /translation="MSIKPDVLAAIGGTPLIKLRRASETTGCTSLGKAEFMNPGQSVK
                     DRAAAAIIEDAVNRGELRPGGVIVEGTAGNTGIGLALVANALGYRTVIVIPETQSQEK
                     KDMLRLAGAELVEVPAAPYANPNNYVKVSGRLAERLAKEDPNGAIWANQFDNVANREG
                     HIRTTGPEIWEQTDGKLDGFICAVGTGGTLAGVGIALKERNPKIAIGLADPMGAALYS
                     YYTTGELKASGSSITEGIGQGRITKNLEGAPVDVAFQIPDEEAVPIVFDLLEHEGLCL
                     GGSSGINVGGAIRLARHLGPGHTIVTVLCDYGTRYQSKLFDPAFLRSKNLPVPAWLDR
                     KASIDPGLV"
     gene            1797..>2565
                     /locus_tag="VE686_09130"
     CDS             1797..>2565
                     /locus_tag="VE686_09130"
                     /EC_number="3.4.13.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013892680.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0070573 - metallodipeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="membrane dipeptidase"
                     /protein_id="HYY84647.1"
                     /translation="MSAPLAVFDGHNDVLLRLHMLQGEPERAFLEGRGSGHLDLPRMR
                     QGGLAGGLFAIFVPSLEEGPGADALMEGATYDIPLPPELEPTRAQRATVHMASLLFRI
                     ERASAGRVKVCRGVADIRAAMEAGVVATVLHVEGAEAIDPEFHMLDVLHAAGLRSLGP
                     VWSRPNLFGDGVPFRFPSGPDIGGGLTELGRELVRRCNQLKILVDLSHLTEQGFWDVA
                     RVTDAPLVASHSNAHAVCAHSRNLTDRQLAAIRESGGL"
BASE COUNT          368 a          946 c          862 g          389 t
ORIGIN      
        1 tcgccgtgac tatcgcgacg tacttcgcct tccccgaggc ctatatcttc ttcggcatcc
       61 tgcactgcat tgcggcggcg agcgttctcg ccctgccctt cgttttcgcg cctgcctggg
      121 tcacgctcgc cgtcgcggcg ctggtgctcg gcgcccgcag cgtcattgca tcgccggagt
      181 tcgacgcgcc cctgctcgcg ttcgtcgggc tcgggactcg cgtgccggtc accaacgact
      241 acgtgccgct gtttccgtac gccggcctcg tcctcgcggg ggttgcggcc ggccgggccg
      301 gggcggcgtg gctcgcctcc aacgcggagc ggcgctggcg aagcaccggc cttgtcggcg
      361 cgacgctcgt gtgggcggga cggcacagcc tgccgatcta cctcctgcac caactcgtcc
      421 ttctcggcgc gctcacggcc atcgtccagg tcacggggcc gaacccggcc gcgatcgaag
      481 cgggtttcac gcgcgactgc gagacgagct gccgcccttt gcgcgacgcg cagacctgcc
      541 gcgccgcatg cacctgcaca gtggctcgca tgaagcaggc tgacatctgg gccaaggccg
      601 cctccggacg cctcgatgcc gacgagacgg cgcagatgtc cggcttcgcg cggcagtgcc
      661 tcgccgagcc cggcgcgcgg ccctgacact cacgccgcgc ccttgccggg ccggcgccga
      721 tccgatcatt gtggcccaaa gcccgcccgg agatccgctt caccgatgtc catcaagccc
      781 gacgtcctcg ccgccatcgg cggcacgccg ctcatcaagc ttcggcgcgc ctctgagacc
      841 accggctgca ccagcttagg caaggccgag ttcatgaacc ccgggcagtc ggtgaaggac
      901 cgcgccgccg cggccatcat cgaggacgcc gttaaccggg gcgagctccg gcccggcggc
      961 gtcatcgtcg agggcacggc cgggaacacc gggatcgggc tcgcgctggt tgccaacgcg
     1021 ctcggctatc gcacggtgat cgtgatcccc gagacgcaga gccaggagaa gaaggacatg
     1081 ctgcggctcg cgggcgccga gctcgtcgag gtgccggcgg ccccttatgc caaccccaac
     1141 aactacgtga aggtctcagg ccggctcgcc gagcgcctcg ccaaggagga cccgaacggt
     1201 gccatctggg cgaatcagtt cgacaacgtc gccaaccggg agggccacat ccgcaccacc
     1261 ggaccggaga tctgggagca gaccgacggc aagctggacg gcttcatctg cgccgtcggg
     1321 accggcggca cccttgcggg cgtgggtatc gcgctcaagg agcgcaaccc gaagatcgcc
     1381 atcggccttg ccgaccccat gggcgcggcc ctctacagct actacaccac aggcgagctg
     1441 aaggcctccg gctcatcgat caccgaggga atcggccagg ggcgcatcac caagaacctc
     1501 gagggcgccc cggtggacgt ggcgttccag atccccgacg aggaggcggt gccgatcgtc
     1561 ttcgacctcc tcgagcacga ggggctgtgc ctcggcgggt cgtccggcat caacgtcggg
     1621 ggcgcgatcc ggctcgccag gcacctcggc ccggggcaca ccatcgtcac ggtgctgtgc
     1681 gattacggca cgcgctacca gtcgaagctc ttcgaccccg ccttcctgcg ttccaagaac
     1741 ctgcccgtgc cggcctggct cgaccgcaag gcgtccatcg acccgggcct cgtctgatga
     1801 gcgcgccgct ggccgtgttc gacgggcaca acgacgtcct cttgcgcctc cacatgctcc
     1861 agggggagcc cgagcgggcg ttcctcgagg ggcgcggcag cggccacctc gatctgccgc
     1921 gcatgcgcca aggcgggttg gcgggcgggc tcttcgccat cttcgtcccg tctctcgagg
     1981 aagggcccgg tgccgacgca cttatggagg gcgccaccta cgacatcccg ctgccgcccg
     2041 agctcgagcc gacgcgcgcg caacgcgcga cggtccacat ggcttcgctc ctgttccgca
     2101 tcgagcgcgc ctcggcgggg cgcgtgaagg tctgccgcgg cgtggccgac atccgcgccg
     2161 ccatggaggc gggcgtcgtc gcgacggtgc tgcatgtcga aggcgccgag gcgatcgacc
     2221 ccgagttcca catgctcgac gtgctgcacg cggcaggctt gcgctctctc gggccggtct
     2281 ggagccgccc gaacctgttc ggcgacggcg tgccgttccg cttcccgtcg gggcccgata
     2341 tcggcggcgg gctgacggag ctcgggcgcg agctcgtccg gcgctgcaat cagctgaaga
     2401 tactcgtcga cctgtcccac ctcaccgagc agggcttctg ggacgtggcg agggtgacgg
     2461 acgcgccgct cgtcgccagc cactccaacg cgcatgcagt ctgcgcccat tcgcgcaacc
     2521 tcacggaccg gcagcttgcg gccatccggg aatcgggggg cctcg
//
LOCUS       DASQWN010000486         2190 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1375657, whole genome shotgun sequence.
ACCESSION   DASQWN010000486 DASQWN010000000
VERSION     DASQWN010000486.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2190)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2190)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2190
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1375657"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1335
                     /locus_tag="VE686_09135"
     CDS             <1..1335
                     /locus_tag="VE686_09135"
                     /EC_number="3.4.21.107"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017482909.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0030288 - outer membrane-bounded
                     periplasmic space [Evidence IEA];
                     GO_function: GO:0004252 - serine-type endopeptidase
                     activity [Evidence IEA];
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA];
                     GO_process: GO:0006950 - response to stress [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Do family serine endopeptidase"
                     /protein_id="HYY84648.1"
                     /translation="DVVDTVKPAVVAVRVKVENATSDGVQRFGGDGESLDQLPPQLRE
                     FFKRFGGENGGSATPFGRGPRGGGGGERQGLGSGFFISADGYVVTNNHVVDGAKTVQL
                     TTDDGRTLDAKVVGSDPKTDVALLKVTEGGNFPFVRLAKTAPRVGDWVVAIGNPFGLG
                     GTVTAGIVSARGRDIGASAYDDFLQIDAPINKGNSGGPTFNLAGEVVGVNTAIYSPSG
                     GSVGLAFAIPSDTVSSVVNQLETDGKVTRGYLGVQIQPMSKDLADSLGLSTQKGALVN
                     SAETGTPAAKAGLKAGDVITAVNGDPVATARELSRRIAGLKPGSKVELSYLRNGKEQT
                     ASVELGSLPNERSAQVDPREERSPQQLGLRLGPSDEGVAVVAVDPSGPAAAKGIKEGD
                     VILEVGGQAVSRPADIKAGLDAAAKEGKRAVLLRVKSGEGTRFVAIAMPKAG"
     gene            complement(1477..>2190)
                     /locus_tag="VE686_09140"
     CDS             complement(1477..>2190)
                     /locus_tag="VE686_09140"
                     /inference="COORDINATES: protein motif:HMM:NF013931.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HYY84649.1"
                     /translation="EPEQYDILLLELKNHDGQLPREFRKELAAAAFRRVTEYDAAIAD
                     YAEALKLLPNDAEFLNNRAMARFHKRDLDAALADAEAAIKADPKSAPAYDTRAQILAV
                     KGEFARAVADYDEALRIAPTLTAAAEGKKAAEVALAAQKAAQGPAQLGSVVVAMGVLE
                     VAPQRCGFNPVLPTIMQLASTTGLGPEMLDAEPHAAAKRKAAEEAAAAARTDKAGFCE
                     RVWADYGGNGKKFADLLTR"
BASE COUNT          314 a          754 c          794 g          328 t
ORIGIN      
        1 gacgtcgtcg acacggtgaa gcccgccgtc gtcgctgtcc gcgtgaaggt cgagaacgcg
       61 acgtccgacg gcgtgcagcg cttcggcggc gacggcgaaa gcctcgacca gctcccgccc
      121 cagctgcgcg agttcttcaa gcgctttggc ggcgagaatg gcggcagcgc cacgccattt
      181 ggccgcgggc cgcgcggcgg cggcggcggc gagcgccagg gcctcggctc gggcttcttc
      241 atctcggccg acggctacgt cgtcacgaac aaccacgtcg tggacggggc gaagaccgtg
      301 cagctgacga cggacgacgg gcgcacgctc gacgccaagg tggtcggctc ggacccgaag
      361 acggacgtgg cgctgctcaa ggtcaccgaa gggggcaact tccccttcgt gcggctcgca
      421 aagaccgcgc cgcgggtggg cgactgggtt gtggccatcg gcaacccgtt cggcctgggc
      481 ggtaccgtca cggccggcat cgtctccgcg cggggccgcg acatcggcgc cagcgcctat
      541 gacgacttcc tgcagatcga cgcccctatc aacaagggca actcgggcgg gccgaccttc
      601 aacctcgcgg gcgaggtggt gggcgtgaac acggcgatct actcgccgtc cggcggcagc
      661 gtcggcctcg cgttcgcgat cccgtccgat acggtctcgt cggtggtcaa ccagctcgag
      721 accgacggca aggtcacgcg cgggtacctc ggcgtgcaga tccagcccat gtcgaaggac
      781 ctcgccgaca gcctcggctt gtcgactcaa aaaggcgcgc tcgtgaacag cgccgagacc
      841 ggcacgccgg ccgcgaaggc gggcctcaag gccggcgacg tgatcacggc cgtcaacggt
      901 gatccggtcg cgaccgctcg tgagctgtcg cgcaggatcg ccggcctcaa gccgggctcg
      961 aaggtcgagc tcagctacct gcggaacggc aaggagcaga ccgcctcggt cgagctcggc
     1021 agcctgccga acgagcgtag cgcgcaggtc gatccgcgcg aggagcgcag cccgcagcag
     1081 ctcgggctgc ggctcgggcc gtccgacgag ggcgtggccg tcgtggccgt cgatccgtcc
     1141 ggccctgcgg ccgcgaaggg gatcaaggaa ggcgacgtca tcctcgaggt tggcggccag
     1201 gcggtctcgc gaccggccga catcaaggcc gggctcgatg cggctgccaa ggagggcaag
     1261 cgagccgtcc tcctgcgcgt gaagagcggc gagggcaccc gcttcgtcgc catcgcgatg
     1321 ccgaaggcgg gctaaccctc gtctcgggag cttgagggcg ccggcgcggc cccgtatccc
     1381 cccgcctccc ggggccgcgc atgacgagcc ctcatgaacg gcaggccgcc tccgcggcct
     1441 gccgttttcg cgtcagcgtt gtagcgactg actggcctaa cgggtcagga gatccgcgaa
     1501 tttcttgccg ttgccgccgt agtcggccca cacacgctcg caaaagcccg ccttgtcggt
     1561 gcgtgccgcc gccgccgctt cctccgccgc cttgcgcttt gcggccgcat gcggctcggc
     1621 gtccagcatc tcggggccga gtccggtggt gcttgcaagc tgcatgatgg tcgggaggac
     1681 gggattgaag ccgcagcgct gcggcgcgac ctcgagcacg cccatggcga ccaccacgga
     1741 tccgagttgc gctggcccct gggccgcctt ctgagccgcg agcgccacct cggcagcctt
     1801 cttgccctcg gcggcggcgg tcagggtcgg cgcgatcctg agggcttcgt cgtagtccgc
     1861 aacggcccgg gcgaactcgc ctttgacggc gaggatctgc gcgcgggtgt cgtaggcggg
     1921 cgcggacttc gggtccgcct tgatggcagc ctctgcatcg gcgagcgccg cgtcgaggtc
     1981 acgcttgtgg aagcgggcca tggcgcggtt gttgaggaac tcggcgtcgt tgggcaggag
     2041 cttcagcgcc tccgcgtagt cggcgatggc ggcgtcgtac tcggtgacgc gccggaacgc
     2101 ggcggccgcg agctccttgc ggaactcccg cggcagctgg ccgtcgtggt tcttgagttc
     2161 gagcagcagg atgtcgtact gctccggctc
//
LOCUS       DASQWN010000487         2183 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_681003, whole genome shotgun sequence.
ACCESSION   DASQWN010000487 DASQWN010000000
VERSION     DASQWN010000487.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2183)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2183)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2183
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_681003"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(146..700)
                     /locus_tag="VE686_09145"
     CDS             complement(146..700)
                     /locus_tag="VE686_09145"
                     /EC_number="3.6.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012514.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX hydrolase"
                     /protein_id="HYY84650.1"
                     /translation="MATHRVYDGGWLALEDRRVRDPAGHDAPYAVVLFKKRGLRILPI
                     DSAGCTHLVGQYRYAAEYFSWELPAGGSEPGEDLERAARRELSEEVGLSAEHLLKLLD
                     MVVTGSVTDERQIGFVAWGFDHVPRDPDPQEVLRVRRVPFVEALDLAMDGTIRDAGSV
                     ALLATVQVRAAAGTLPPDLLGRLR"
     gene            1663..2103
                     /locus_tag="VE686_09150"
     CDS             1663..2103
                     /locus_tag="VE686_09150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007592779.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SgcJ/EcaC family oxidoreductase"
                     /protein_id="HYY84651.1"
                     /translation="MEEDTMRLTTLAVAAVLLGGPALAQDKATIEKLNDAFEAAFNKA
                     DFAALANMYTKDAYLLPPGSELAKGRSNVQAFWTKAGEAVSDLKLTTVDVKPLGSDAA
                     REVGTFSLMTKGQQRQQVVGKYVVVWQKVGNEWKLATDIWNTDK"
BASE COUNT          404 a          704 c          723 g          352 t
ORIGIN      
        1 aaagtcacct actctggaca tgtgagggga agcgtgatcg aaggcacgag gaccaccggg
       61 cagacccgcg gtgcctggtc tgcggcccga gtgtaggagc ggcgtcgaca ctgagcgaca
      121 atcatctgcc gcgccgagtc gtggactagc gtagtcggcc gagcaagtcg ggcgggagag
      181 tcccggcggc agctcgaacc tggacggtcg cgagcaacgc aacggagccg gcgtcgcgga
      241 tcgttccgtc catggcaagg tctagcgcct ccacgaacgg aactcgcctg acgcggagca
      301 cctcttgtgg atccggatcc cgcggcacgt ggtcgaagcc ccaggcgaca aacccgatct
      361 gtcgctcatc cgtcacggac cctgtaacaa ccatgtcgag aagcttgagc aagtgctcgg
      421 cggaaagccc cacttcctcc gacagctcac gcctggctgc ccgttcgagg tcctcgccgg
      481 gctcgctgcc gccggccggg agttcccaac tgaaatactc cgccgcgtag cggtactgac
      541 cgacaaggtg ggtgcagccg gcgctgtcga tcggcaaaat ccgcagccca cgctttttga
      601 aaagcacgac ggcatacggc gcgtcgtgcc ccgcggggtc gcgtaccctg cgatcttcaa
      661 gcgcaagcca gccgccgtca tagacgcggt gcgtcgccaa tgtggtccaa gggttatacg
      721 ggttgaccat tgggccctcg cgctcaggcg cctcgggaga ggcaacgctc gcgtcaacgc
      781 gcgagccttg cgtctcgtgc cgtttggctg cggaagcgcg gtttcgcccg gccggaccgg
      841 gcggagtacc gggccgccgg catggcgcag cttgggccta agccgctccg cgcaggtgcc
      901 ggagccccgg atagcctgca agagcgcgcg gcccttcgcg cgtctcgata gcgtcagaag
      961 ccgtacgggc gaccgtaccg cgccgaatac tccccagccc tcatgcccgg cggaggcggc
     1021 cacggtgcgc cgtagtgccc gcgggcacgt ctgtcgtagt agtcgactcg tggccggcgc
     1081 tgagaatatc ggccatcgta ctcgatcccc cctcgcgagc cgcaccagcc tttcttcgcg
     1141 tgtccgggcg ggcaatggct tggcttggcg cttgctcctg gtgctccaag caagatggct
     1201 gctgccgcga gtcctgctat caagagcttc atcgcccgct cccacgttga ccagagttcg
     1261 acagtggaac gccgcctcag atcaccggtt cctgcgcgaa gggctcgacg gctccctaag
     1321 atcgcattgg ccgggtgacg gcggggcgtc ccacagcgca cgtgcgccgt cgtaaatgga
     1381 tgggagccac tggcgcgcgg cgaacctcac gatctgctct cgagagtctt caggtgcggc
     1441 cgctcaagag gttggcagcg gagttcgaag ccactggcgc tcggcgccga aaaggccggg
     1501 cgctagggcc ggtcctcgcc gatacccacc gcggggaaag ccgcggaggc gacattgagt
     1561 ggtgacataa tcctgttggg ccattgagcc gcgccgaggg ttgtaccagt ttcgtaatgc
     1621 gcggcggctc tggccgcccg ctgtcgcgct cgaagcaagc acttggagga ggacaccatg
     1681 cgtctgacta cgcttgcggt cgccgctgtt ctgctcggcg ggccagccct tgcccaggac
     1741 aaggctacca tcgaaaagct gaatgacgcg ttcgaggcag cgttcaacaa ggccgacttt
     1801 gccgcgctcg caaacatgta caccaaggac gcctacctcc tgccgccggg cagcgagctg
     1861 gccaagggcc ggagcaatgt tcaggcgttc tggacgaagg ccggcgaggc tgtgagcgat
     1921 ctcaagctga cgacggtaga tgtaaagccg ctcggcagcg acgccgcccg ggaggtcgga
     1981 accttctccc tgatgaccaa aggccagcaa cgccagcaag tagtcgggaa atacgttgtc
     2041 gtatggcaaa aggtcggaaa cgagtggaag ctcgcgacgg acatctggaa cactgacaag
     2101 tagcggcaga gggtacaaga gtgggaccca cgtgttccag atgacccggg gaacacctgc
     2161 aatgccgggc cacattcttg acc
//
LOCUS       DASQWN010000488         2346 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1078148, whole genome shotgun sequence.
ACCESSION   DASQWN010000488 DASQWN010000000
VERSION     DASQWN010000488.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2346)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2346)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2346
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1078148"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            295..1362
                     /locus_tag="VE686_09155"
     CDS             295..1362
                     /locus_tag="VE686_09155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012563828.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY84652.1"
                     /translation="MPKSYNTLILGASYGSLLATKLALAGHNTKLVCLPAEAEAINRD
                     GAIVRMPIKGRAPVEIDTRKAPGKVSADGPAAVDPADYDLIALAMQEPQYRSPGVREL
                     LDKVARSGKPCMSIMNMPPLPYLKRVPGIDADGLKSAFTDATVWQSFDPALVTLCSPD
                     PQAFRPPEEPVNVLQVTLPTNFKVARFDSEPFTQMLRQMQADIEAVRYDTPEGKIELP
                     VKLKVHDSVFVPLAKWAMLITGNYRCVTKDGPRAIKEAVHTDIEASRSVYNWVRDLCV
                     SLGAAPEDMVPFEKYAAAAQGLARPSSAARALFAGAPNIERVDRLVQSIAAQRGQRNP
                     VLDETVALVDARLEQNRKAAA"
     gene            1665..>2346
                     /locus_tag="VE686_09160"
     CDS             1665..>2346
                     /locus_tag="VE686_09160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012045299.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004176 - ATP-dependent peptidase activity
                     [Evidence IEA];
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent metallopeptidase FtsH/Yme1/Tma
                     family protein"
                     /protein_id="HYY84653.1"
                     /translation="MDKTKQFHAWYWVVAFLGILGIQYLASTAREIATIPYSQFEELL
                     RERKIADLGISDRFIQGTLKEPLPSGQSRFATTRVDPEFAGQLQQFGVRYTGQVESTL
                     LRDILSLLLPIAIFFGVWALIARRMAKSGGLGGGLMQIGKSKARIYVETDTGVRFEDV
                     AGVDEAKDELREIVEFLKDPAEYGRLGGRMPKGVLLVGPPGTGKTLLAKAVAGEAGVP
                     FFSISGSEF"
BASE COUNT          362 a          881 c          762 g          341 t
ORIGIN      
        1 cgcttgcgcc atggcggcca ggggccaggc ggtgcttgcg cccgcgacgc ccagcaggaa
       61 ctcccgccgc ctcattgatg gccccccagc gtcccgcttc acgcctcagc gcttgcccgg
      121 cttgcccgcc agcttctacg aacgcgagga cgcctgcaac gtcgtatggg cggccgtcga
      181 ggcgggacga ggtttccggg caacgcgcgc cttgcgacca ccatcggcgg cgggctatgc
      241 gttctccctg aacgccgtgc ccgcccgtcg gggccgaacc ctggagcatc cgccgtgccg
      301 aagtcctaca acacgctgat cctcggagcc tcgtacggct cgctcctcgc gaccaagctc
      361 gcgctcgccg ggcacaacac caagctcgtc tgcctgccgg cggaagccga ggcgatcaac
      421 cgggacggcg ccatcgtgcg catgcccatc aagggccgcg cgccggtcga gatcgacacg
      481 cgcaaggcgc ccggcaaggt ctcggccgac ggtccggccg ccgtggaccc cgccgactac
      541 gacctcatcg cgctcgccat gcaggagccg cagtaccgct cgcccggcgt gcgcgagctc
      601 ctcgacaagg tggcgcggtc gggcaagccc tgcatgtcga tcatgaacat gccgccgctg
      661 ccctacctca agcgcgtccc cggcatcgac gccgacgggc tgaagagcgc cttcacggac
      721 gccaccgtgt ggcagagctt cgatccggcc ctcgtgaccc tgtgcagccc cgacccgcag
      781 gcgttccggc cgcccgagga gcccgtcaac gtgctccagg tcaccctgcc gacgaacttc
      841 aaggtcgcgc gcttcgactc cgagccgttc acgcagatgc tgcggcagat gcaggccgac
      901 atcgaggcgg tccgctacga cacgccggaa ggcaagatcg agctgcccgt gaagctcaag
      961 gtgcacgaca gcgtgttcgt gccgctcgcc aagtgggcga tgctgatcac cggcaactac
     1021 cgctgcgtga cgaaggacgg cccgcgcgcc attaaggagg cggtgcacac cgacatcgag
     1081 gcgtcccgct ccgtctacaa ctgggtccgc gacctctgcg tctcgcttgg cgcagcaccc
     1141 gaggatatgg tgccgttcga gaagtacgcc gccgccgcgc aaggcttggc gcgcccctcc
     1201 tcggccgccc gcgccctctt cgccggcgcg ccgaacatcg agcgcgtgga tcgtctcgtg
     1261 cagtcgatcg cggcccagcg cggccagcgc aacccggtcc tcgacgagac cgtcgccctc
     1321 gtcgacgccc gcctcgagca gaaccgcaag gccgccgcat agcgcgcgag ccgagcacct
     1381 cgtactgcca ttccggggcg gcccaacggg ccgagcccgg atcccataac cacctccggc
     1441 gcggcgcgcg ccgcgcccga ccagccgcgc gctcttgcgc acggtaacgg atatgggttc
     1501 cgggctcctc gctgcgctcg gccccggaat gacaagaggg gtggcgcccg cacggcctcc
     1561 ccgccctcaa gcctcgcccc tcccctgcca cgtcgctgcc ccgaacaact gcggcggtcg
     1621 ggcgttgccg gagcgcgggg gttcgctcaa gggcgaggat cgccatggac aagaccaagc
     1681 agtttcacgc gtggtactgg gtcgtcgcgt tcctcggcat cctcggcatc cagtatctcg
     1741 cctcgacggc gcgcgaaatc gccaccatcc cctacagcca gttcgaggaa ctcctgcgcg
     1801 agcgcaagat cgccgatctc ggcatctcgg accgcttcat ccagggcacc ctcaaggagc
     1861 cgcttccgag cggccagtcg cgcttcgcca cgacgcgggt cgatcccgag ttcgccgggc
     1921 agctgcagca gttcggggtc cgctacaccg ggcaggtcga gagcaccctc ctgcgcgaca
     1981 tcctctccct ccttctgccg atcgcgatct tcttcggcgt ctgggcgctc atcgcgcgcc
     2041 gcatggcgaa gagcggcggc cttggcggcg gcctgatgca gatcggcaag tcgaaggcgc
     2101 gcatctatgt cgagaccgac actggcgtca ggttcgagga cgtggcgggt gtcgacgagg
     2161 ccaaggacga gctgcgcgag atcgtcgagt tcctcaagga tccggccgaa tacggccggc
     2221 tcggcgggcg catgccgaag ggcgtgctgc tcgtcggccc gccgggcacg ggcaagacgc
     2281 tgctcgcaaa agccgtcgcg ggcgaggccg gcgtgccgtt cttttcgatc tccggctcgg
     2341 aattcg
//
LOCUS       DASQWN010000489         2699 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1475608, whole genome shotgun sequence.
ACCESSION   DASQWN010000489 DASQWN010000000
VERSION     DASQWN010000489.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2699)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2699)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2699
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1475608"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            1..151
                     /locus_tag="VE686_09165"
                     /pseudo
     CDS             1..151
                     /locus_tag="VE686_09165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019862771.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=2
                     /transl_table=11
                     /product="toprim domain-containing protein"
     gene            complement(131..1747)
                     /locus_tag="VE686_09170"
                     /pseudo
     CDS             complement(131..1747)
                     /locus_tag="VE686_09170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012561708.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DNA gyrase subunit B"
     gene            complement(1935..>2699)
                     /locus_tag="VE686_09175"
     CDS             complement(1935..>2699)
                     /locus_tag="VE686_09175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019907039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043138 - 3'-5' DNA helicase activity
                     [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RQC domain-containing protein"
                     /protein_id="HYY84654.1"
                     /translation="PDERRRVERQKLEAMIGLCEAPTCRRQALLAYFGEESGPCGHCD
                     LCAGAVPVVDATVDAQKVLSAVARTGERFGAGYIADLVAGRENPAIQRNGHTALKTFG
                     AGRDKPHGAWRALIRQLFAAGAVSETDGEYPGLRLTDKGEAILFGRESIALRPEAPRK
                     ASRDQRRREAGSAVEGLDPSDEALFQHLRSLRASIAREEGVAAFIVFPDRTLIDMARL
                     KPIDLFAMRAVSGVGERKLAAYGARFAEAVRGFLAQ"
BASE COUNT          393 a          907 c          957 g          442 t
ORIGIN      
        1 ggagttcgag gtcgagaaga tccgctacgg caagatcatc atcctggccg acgccgacgt
       61 cgacggcagt cacatccgca cgctgctact caccttctat taccggcaga tgaaggcgct
      121 gatcgagggc ggccatgtgt acgtggccca gctcgaccag atccttcatc tggcggaaga
      181 agaaggtgag cagcagggtg cgaatgtggt tcccgtcgac gtcggcgtcg gccaggatga
      241 tgatcttgtg gtagcggatc ttggtgacgt cgaactcttc gccgaggttg gcgccaatgg
      301 ccgagatgag cgactggatc tcggcgttct tgagcatctt gtcgacgcgg gcccgctcga
      361 cgttgaggat cttgccccga aggggcagca cggcctggaa gacgcggtca cggccctgct
      421 tggccgagcc gcccgccgag tcgccctcga ccagcaggat ctcgcacttc gacgggtcgc
      481 gctcctggca gtcggcaagc ttgccgggca gggacgccat atcgagcgcc cctttgcggc
      541 gtgtcaggtc gcgggccttg cgcgccgcct cgcgggcggc cgccgcctcg acgaccttgc
      601 cgacgatggt gcgcgcgtcg gccgggtgct cctcgagcca gtggctcagg tgctcgctga
      661 gcacgccttc gacgaccggg cgcacctcgg acgagaccag cttgtccttc gtctgcgacg
      721 agaacttcgg gtcaggcacc ttgacggaga ggacggcggt gagcccctcg cggcagtcgt
      781 cgcccgtgag cgtcaccttc tccttcttgg tcaggccgga cgagtcggcg tagccggtga
      841 tctgccgggt cagcgccgcc cggaagcccg caaggtgcgt gccgccgtcc cgctgcggga
      901 tgttgttggt gaagcacagc acgttctcgt ggtacgagtc gttccaccac agcgcgacct
      961 cgacgccgat gccgtcgcgc tcggcgcgga tcatcacggg cgccgacacg aggggcgcct
     1021 tggcgcggtc gagatagcgc acgaaggcct cgacgccgcc ctcgtacatg agctcttcgc
     1081 gcttcttctc tgcatggcgg ttgtcggtga ggacgatgcg aacgcctgag ttcaggaacg
     1141 ccagctcgcg cagccggtgc tctagggtgg cgtagtcgaa ctccaccatc gtgaacgtct
     1201 cggtcgaggg cacgaaggtg acctcggtgc cgcggcggtc gccggcgtcg ccgacgacgg
     1261 caagcggcgc caccgcgtcg ccgtggcgga actcgatgaa gtgctccttg cccccgcgcc
     1321 acacgcggag cttgagggag ctcgagaggg cgttgaccac cgagacgccg acgccgtgca
     1381 gcccgcccga gaccttgtag gagttctggt cgaacttacc gccggcgtgg agctgggtca
     1441 tgatgacctc ggccgccgag atgccctcgc cctggtggat gtcggtcggg atgccgcggc
     1501 cgttgtcggt gaccgtgacc gagccatcgg cgttgagcgt caccgtgacc tcggtggcgt
     1561 ggcccgcgag cgcctcgtcg atggcgttgt caaccacctc gtagaccatg tggtgcaggc
     1621 ccgagccgtc gtcggtgtcg ccgatgtaca tgcccggccg cttgcgcacg gcatcgaggc
     1681 ctttcagaac cctgatcgac tccgcgccat aggaatcggc gtcgacgttg cgggcgggct
     1741 cggccatcgg gtgtccttgg aacaggaaaa gcgcgcgccg cacgaccggg gcacgcgtca
     1801 gaacgattcg tcctcctcta tgtagtgcat ccgccttgaa ttttcacccc cgcgcgcaca
     1861 cgcgcgtacg cgcgtggagc ttggcggttc aggcgcggtg ggcatctcgt tgccgatggc
     1921 ggagctcggg cggattactg cgccagaaac ccgcgcaccg cctctgcgaa ccgcgcgccg
     1981 taggccgcga gcttgcgctc tccgacgccc gagacggcgc gcatggcgaa gagatcgatg
     2041 ggcttcaggc gggccatgtc gatcagggtg cggtccggga agacgatgaa ggcggcgacg
     2101 ccctcctcgc gggcgatcga cgcccgcagg gaacgcagat gctggaacag ggcctcgtcg
     2161 gagggatcga ggccctcgac ggcgctcccg gcctcgcggc ggcgctggtc gcgggacgcc
     2221 ttgcgcggcg cttcgggccg cagcgcgatg ctctcgcggc cgaacaggat ggcctcgccc
     2281 ttgtccgtga gccgcaggcc cgggtactcg ccgtccgtct cggacacggc accggcggcg
     2341 aagagctggc ggatgagggc gcgccaggcg ccatgcggct tgtcgcgccc cgccccgaag
     2401 gtcttcaggg ccgtgtggcc gttgcgctgg atcgccgggt tctcgcggcc cgccaccagg
     2461 tcggcgatat agcccgcgcc gaagcgctcg ccggtgcgcg ccaccgccga gagcaccttc
     2521 tgggcgtcga ccgtggcgtc gaccaccggt acggcgccgg cgcacaggtc gcagtggccg
     2581 caggggccgc tctcctcgcc gaagtaggca agaagcgcct ggcgccggca tgtcggcgcc
     2641 tcgcacaggc cgatcatggc ctcgagcttc tgccgctcga cgcgccggcg ctcgtcggg
//
LOCUS       DASQWN010000490         2712 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_339416, whole genome shotgun sequence.
ACCESSION   DASQWN010000490 DASQWN010000000
VERSION     DASQWN010000490.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2712)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2712)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2712
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_339416"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..568
                     /locus_tag="VE686_09180"
     CDS             <1..568
                     /locus_tag="VE686_09180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009490339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="glycoside hydrolase family 1 protein"
                     /protein_id="HYY84655.1"
                     /translation="RRHCIMGNDYYMSNEHRVAADGSTRSAGEVFGYDEITRQYYERY
                     RLPVMHTETNLSQGPNGDEAVHWLWKQWSNVLRVRNTGVPIVGFTWYSLTDQVDWDIA
                     LREERGTVNPLGLYDLDRNIRPVGECYKQVIKDWGEVLPTQSVCLVVPVLRADEYDDP
                     VAQRLRKRAQRFRGQPRGEPAMADQSGG"
     gene            571..1308
                     /locus_tag="VE686_09185"
     CDS             571..1308
                     /locus_tag="VE686_09185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015316644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HYY84656.1"
                     /translation="MRLKDKVAIVTGGSSGIGLAAARRLGAEGARIVIASQNKERIEA
                     AAERVRKEDGVEVLGLECDVSSEAQVGSVVDATFERFGRLDIVVNNAGMMLFKKLEEF
                     TDADWQRVLGVDFMGAVHFTRQAFLRMTGGGSIVNVASVHALMTSPLVAPYAAAKAAM
                     LSLTRSAGIEGRDKGIRCNVVLPGAIDTGMLWDNPNIKSGAEKIDPKDVGKPEDVAAA
                     VAFLASDDAAFITGTALRVDGGRLDRL"
     gene            1351..2160
                     /locus_tag="VE686_09190"
     CDS             1351..2160
                     /locus_tag="VE686_09190"
                     /EC_number="3.1.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009491202.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TatD family hydrolase"
                     /protein_id="HYY84657.1"
                     /translation="MLVDSHCHLDFPDLAGRLTEVLARAREAGVARMVTISTRVAQFE
                     TYRALAEAHENVLFTVGTHPHNAGEEFDVPAARLVELSRHPRCVAIGEAGLDFHYDRS
                     PRDVQRRVFRTHIAAARESGLPLVVHARQADDEMIGVLKDESGRGRFDAVLHCFSSGP
                     ELAQVGVELGFYISFSGILTFKNSEHLRRIAASVPRDRLLVETDAPYLAPAPHRGRVN
                     EPAYVAHTAKVLAETIGVPEATVAEITTANFYRLFLKAQAFHHVAARLAPV"
     gene            2157..>2712
                     /locus_tag="VE686_09195"
     CDS             2157..>2712
                     /locus_tag="VE686_09195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009491201.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HYY84658.1"
                     /translation="MSLSVTILGCGSSTGVPRVGAGWGACDPAQSKNRRLRCSILVER
                     TGPDGRTCVLVDTSPDLRQQLLDAAVTRLDAVLYTHDHADHTHGIDDLRPLVLHMRRR
                     IAAYADAATAAVLQTRFGYCFETPPGSGYPPILDEHRIVAPRPVVIQGPGGAVEAEPF
                     RMIHGPTEATGFRFGSLAYAPDVSV"
BASE COUNT          426 a          950 c          919 g          417 t
ORIGIN      
        1 gcgccgccac tgcatcatgg gtaacgacta ctacatgtcg aacgagcacc gcgtggcggc
       61 cgacggctcg acgcggtccg ccggcgaggt cttcggctac gacgagatca cgcgccagta
      121 ctacgagcgg taccggctgc cggtgatgca cacagagacc aacctctccc aaggaccgaa
      181 cggcgacgag gccgtccact ggctctggaa gcagtggtcg aacgtcctgc gggtccgcaa
      241 caccggcgtc ccgatcgtcg gcttcacctg gtactcgctt accgatcagg tcgattggga
      301 catcgcgctt cgagaggaga gggggaccgt caacccgctc ggcctctacg acctcgaccg
      361 caacatccgt cccgtgggcg agtgctataa gcaggtcatc aaggactggg gcgaggtgct
      421 gcctacgcag agcgtctgcc tggtcgtgcc tgtgctgcga gccgacgagt acgacgaccc
      481 ggtcgcgcag cgcctgcgaa agcgcgccca gcgcttccgt gggcagccgc ggggcgagcc
      541 cgccatggcg gaccaatcgg gaggttaggc atgcggctaa aggacaaggt ggcgatcgtc
      601 accggcggct cgagcggcat cggcctggcg gccgcacggc gtctcggggc cgaaggcgcc
      661 cgcatcgtca tcgcgagcca gaacaaggag cgcatcgagg cggcggccga gcgagtgcgc
      721 aaggaggacg gcgtcgaggt gctggggctc gagtgcgacg tgagctcgga ggcgcaggtc
      781 ggctccgtgg tcgacgcgac cttcgagcgc ttcggccggc tcgacatcgt cgtcaacaac
      841 gccggcatga tgctgttcaa gaagctcgag gaattcaccg acgcagactg gcagcgggtc
      901 ctcggcgtcg acttcatggg cgcggtgcac ttcacgcggc aggcgttcct gcgcatgacg
      961 ggcggcggct cgatcgtgaa cgtggcgagc gtgcacgcgc tcatgacctc gccgctcgtg
     1021 gcaccttacg cggctgcgaa agccgccatg ctgtcgctca cccgctcggc cgggatcgag
     1081 ggccgcgaca agggcatccg ctgcaacgtg gtgctgccgg gcgccattga caccggcatg
     1141 ctctgggaca accccaacat caaatcgggg gccgagaaga tcgacccgaa ggatgtgggc
     1201 aagcccgagg acgtcgccgc cgccgtggcg ttcctcgcat ccgacgacgc cgccttcatc
     1261 accggcacgg cgctgcgcgt ggacggcggg cggctcgatc ggctctgagg ggtcgcgcgc
     1321 caaggagctc gcctgtatag cggtcgcgcc atgctcgtcg acagccactg ccacctcgat
     1381 ttccccgacc ttgccggccg cctgacggaa gttctggcgc gcgcgcgcga ggccggcgtc
     1441 gcgcgcatgg tgacgatctc cacccgcgtc gcgcagtttg agacctatcg ggccctcgcg
     1501 gaggcgcacg agaacgtgct gttcacggtc ggcacgcatc cgcacaacgc cggcgaggag
     1561 ttcgacgtgc ccgcggcgcg cctcgtcgag ctatcgcgcc acccgcgttg cgtcgccatc
     1621 ggtgaggccg gcctcgactt ccattacgac cgcagccccc gggacgtgca gcggcgcgtg
     1681 ttccgcaccc atatcgccgc cgcgcgcgag agcggcctgc cgctcgtcgt ccatgcccgc
     1741 caggccgacg acgagatgat cggggttctc aaggacgaga gcgggcgagg gcgcttcgat
     1801 gccgtcctgc actgcttctc gtcggggccc gagcttgccc aggtcggggt cgagctcggg
     1861 ttctacatct cgttctcggg gatactcacc ttcaagaact cggaacactt gcgtcgcatc
     1921 gcggcttccg tgccgcggga ccgcctgctg gtcgagacgg acgcgcccta ccttgccccg
     1981 gcgccgcatc gaggccgtgt gaacgagcct gcgtatgtgg ctcacacggc taaggtttta
     2041 gccgaaacca ttggcgttcc ggaggccacg gtggcggaga tcacgacagc caacttctac
     2101 cgcctgttcc tcaaggcgca ggccttccat cacgttgctg cgcggctcgc gccggtatga
     2161 gcctgagcgt gacgatcctc ggctgcggct cctcgacggg cgtgccgcgg gtcggcgccg
     2221 gctggggcgc ctgcgatccc gcgcagtcga aaaaccgccg cctgcgctgc tccattctgg
     2281 tggagaggac cggccccgac ggtagaacct gtgtcctcgt cgatacttcg cccgatctgc
     2341 gccagcagct cctcgacgcc gcggtgacgc gcctcgatgc ggtcctgtac acgcacgacc
     2401 acgccgacca cacccacggc atcgacgacc tgcggcctct tgttctgcac atgcgccgcc
     2461 gcatcgcggc ctacgccgac gcggcgaccg ccgccgtgct gcagacgcgc ttcggctact
     2521 gcttcgagac gccgccgggc agcggctatc cgcccatcct cgacgagcac cgcatcgtcg
     2581 cgccgcgccc cgtggtgatc cagggcccgg gaggcgccgt cgaggccgag ccgttccgga
     2641 tgatccacgg accgacggag gcgaccggat tccgcttcgg cagcctggcg tacgcacccg
     2701 acgtcagcgt ca
//
LOCUS       DASQWN010000491         2032 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1376195, whole genome shotgun sequence.
ACCESSION   DASQWN010000491 DASQWN010000000
VERSION     DASQWN010000491.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2032)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2032)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2032
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1376195"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            126..662
                     /locus_tag="VE686_09200"
     CDS             126..662
                     /locus_tag="VE686_09200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015928319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="gamma carbonic anhydrase family protein"
                     /protein_id="HYY84659.1"
                     /translation="MPLYALDDARPELPASGRYWVAPGAHVMGRVRLGEDASIWFGAV
                     LRGDNELIDIGARSNIQDGSVLHTDPGFPMVIGEDCTIGHKAILHGCVIGPGSLIGMG
                     ATILNGARIGAGCLVGANALILENQSYPDGSLIVGAPAKAIRTMAPEQVERLRATAAG
                     YVRNHRRFAASLKEVAPA"
     gene            718..1782
                     /locus_tag="VE686_09205"
     CDS             718..1782
                     /locus_tag="VE686_09205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012320538.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HYY84660.1"
                     /translation="MKRRTVAKLLSASAVLTLGGVGYARAVRSRNPYYQGPVSDHFDG
                     VRFFNPGHSQDKGLAELARWQLGGRGEAWPDTYESPFPAARPDERVEGLRVTHVGHAS
                     LLIQVARLNILVDPVWSKRASPVRFAGPPRVNPPGIHLRDLPPIDAVLVTHNHYDHLD
                     ARTLSRLWHTHQPRIVAPLGNDAVIAGADPAIVVETRDWGEAVALSDTVTVHLEPAYH
                     WSARGVNDRRMALWCAFVLTTPAGVIYHVGDTGYGDGAIFRQVRETYGAPRLAILPIG
                     AYEPRWFMAPQHINPEEAVRAFEDTGAGQALGHHWGTFRLTNEAIEHPIRDLAAALAD
                     REIPAERFRAMRPGEVWDAS"
     gene            complement(1789..>2032)
                     /locus_tag="VE686_09210"
     CDS             complement(1789..>2032)
                     /locus_tag="VE686_09210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009763914.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF5996 family protein"
                     /protein_id="HYY84661.1"
                     /translation="SYAYPEPPGFRDKPAPPGARFETALGEFILPYEAVRSAQDPDAV
                     LLAFLSTTYAAAADAGAWDRAALECPLGAPAQVRPL"
BASE COUNT          302 a          735 c          705 g          290 t
ORIGIN      
        1 gacttcgagg agccgatcgg ccgcggcgag gaacggctca agggcttcca cggcggctga
       61 atccatccag cgccctcttg gcttccgccg cccctgcgct aagacagccg agacaggagc
      121 tcccgatgcc cctctacgcc ctcgacgacg cacgtcccga actcccggct tccggccgct
      181 attgggtcgc gcctggcgcg cacgtcatgg ggcgggtccg cctcggcgag gacgccagca
      241 tctggttcgg cgccgtcctg cgcggcgaca acgagctcat cgacatcggc gcccgctcaa
      301 acatccagga cggctcggtc ctgcacacgg atccgggctt ccccatggtc ataggcgagg
      361 actgcaccat cggccacaag gccatcctgc acggctgcgt catcgggccg ggatcgctca
      421 tcggcatggg cgcgacgatc ctgaacggcg cgcgcatcgg tgccgggtgc ctcgtcggcg
      481 cgaacgcgct gatcctcgag aaccagagct atccggacgg atccctcatc gtcggggcgc
      541 ccgcgaaggc catccgcacc atggctcccg agcaggtgga gcgcctgcgc gcgactgcgg
      601 ccggctacgt tcgaaaccac cgccgcttcg ccgcgagtct caaggaggtt gcaccggctt
      661 aaagagggaa gctcgcgcgc gctcgcgttc tcgatccccc tcgtccatgg tgtgggcatg
      721 aagcgccgaa ccgtcgcgaa gctcctgtcc gcctccgcgg tgctgacgct tggtggcgtc
      781 ggctacgccc gcgcggtgcg cagccggaac ccgtactacc aggggcctgt gtcggaccat
      841 ttcgacggcg ttcggttctt caatcccggc cacagccagg acaagggcct cgccgagctc
      901 gcccgctggc agctcggcgg tcgcggcgag gcgtggccgg acacgtacga gagcccgttt
      961 ccggccgcga ggcccgacga gcgcgtcgag ggcctgcgtg tcacgcacgt cgggcacgcg
     1021 agcctgctca tccaggtggc gcggctcaat atcctcgtcg accccgtgtg gtcgaagcgg
     1081 gcgagccccg tccgctttgc cgggccgccg cgcgtcaacc cgcccgggat ccacctgcgc
     1141 gacctgccgc cgatcgatgc cgtcctcgtc acgcataatc actacgacca cctcgacgcg
     1201 cgcacgctgt cgcggctgtg gcacacgcat cagccgcgga tcgtggcacc gctcggcaac
     1261 gacgcagtga ttgcaggggc ggatccggcc atcgtggtcg aaacccgcga ttggggcgag
     1321 gcggtcgcgc tgtccgacac cgtcacggtc cacctggagc cggcctacca ctggtcggcg
     1381 cgaggcgtga acgaccgccg catggccctg tggtgcgcct tcgtcctgac gacgccggcc
     1441 ggcgtgatct accacgtcgg ggacacgggc tatggggatg gggcaatctt ccgccaggtg
     1501 cgcgagacct acggcgcgcc gcggctcgcg atcctgccca ttggcgcgta cgagccccga
     1561 tggttcatgg cgccgcagca catcaacccg gaggaggccg tgcgcgcctt cgaggacacc
     1621 ggcgccgggc aggccctcgg ccatcactgg ggcaccttcc gcctcaccaa cgaggccatc
     1681 gagcacccga tccgggacct cgccgcggcg ctcgcggatc gcgagatccc ggcggagcgc
     1741 ttccgggcca tgaggccggg cgaggtctgg gacgcgagct gacgccgcct atagcggccg
     1801 gacctgggcg ggagcgccga gcgggcactc gagcgcggcc cgatcccagg ctcccgcgtc
     1861 ggcggcagct gcgtatgtcg tcgagaggaa ggcaagcagc acggcgtcgg gatcctgggc
     1921 gcttcggacg gcctcgtacg gcaggatgaa ctcgccaagc gcggtctcga agcgggcacc
     1981 cggcggggcc ggcttgtcgc ggaagcccgg cggctcggga taggcgtagg ag
//
LOCUS       DASQWN010000492         2894 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_438346, whole genome shotgun sequence.
ACCESSION   DASQWN010000492 DASQWN010000000
VERSION     DASQWN010000492.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2894)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2894)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2894
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_438346"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2826)
                     /locus_tag="VE686_09215"
     CDS             complement(<1..2826)
                     /locus_tag="VE686_09215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015927944.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin cofactor-binding domain-containing
                     protein"
                     /protein_id="HYY84662.1"
                     /translation="MNLHRAPQTTAVEIALTVNGEPRTALVHPFATLGDVLRDALGLT
                     GTKIGCNAGDCGACTVLLDGAQVCACLVPAAQAHGREIHTVEGSGLDGVTDRLRAAFH
                     QHGAAQCGICTPGMLMAAADLLARDPRASRAQVEDAIGGVLCRCTGYVQIVEAVLAAS
                     HNVIPGERSETRDLSDDGAPDSAWDPGSPLRSGRDDAIRHVGARIPRLDGWPKVAGTD
                     RFGADAAPTDALWLRVVRSPHPRATFVLGDLEAFRASRPGVQAVVTAADVPGENAFGI
                     FPSTKDQPVFAEREVRYRGDPLLGLVGTKEALDRIDDADVPIVWSPLPPIVGPDAALA
                     PGAAVLHESCPDNVLTRGSLSCGDPDAARSEAAATAQGAFETSFVEHAYIEPEAGYAV
                     PTGRDTIEVFACTQAPYMDRDETARVLGLPPENVRIRPSACGGGFGGKLDVSVQPLLA
                     VAAWKVRRPVRMIYSRIESMASSTKRHPARISARAAADRDGRLLSYESDADFDTGAYA
                     SWGPTVANRVPVHASGPYRVPHVRNRARAIYTNGPPSGAFRGFGVPQAAIAHECLMDD
                     LAQALGIDRWDMRRHNALSVGDRTPSGQVLTSSAGLPACLDALKPEWDAMLARVVAHN
                     AANPRRRRGAGIGCMWYGCGNTALPNPSTMRVTLSREGRLTFHNGAVDIGQGSTTVLA
                     QILADALGLPLDRFDLVVGDTALTADAGKTSASRQTFVSGNAARLAGEDLRRKILSLA
                     NVGEGASIALEDATLLIREAARRTVDLSQLPAGAGGIVLEGLGTYDPPTSPLDENGQG
                     VPYATYGFAAQIAEVEVDVALGTTKVLTIVAAHDVGRAVNPTLVEGQIHGGVAQGLGL
                     ALMEEYVPGRTENLHDYLIPTVGDVPAIECILVEDREPLGPHGAKGIGEPALVPTAPA
                     IFSAIRDATGAEVTRVPALPHRLLEAMA"
BASE COUNT          382 a         1007 c         1111 g          394 t
ORIGIN      
        1 cgccatcgcc tccagcagcc ggtgcggcag ggcagggacc cgcgtcacct cggcccccgt
       61 ggcatcgcgg atcgccgaga agatcgccgg cgcggtcggc accagggccg gctcgccgat
      121 ccccttggcg ccatgggggc cgagcggttc gcggtcctcg accaggatgc actcgatcgc
      181 cgggacgtcg cccacggtcg ggatcaggta gtcgtgcagg ttctcggtcc ggcccggaac
      241 gtactcctcc atgagcgcga gcccgaggcc ctgcgcaacg ccgccgtgga tctggccttc
      301 cacgagggtc gggttcacgg cccggccgac gtcgtgagcg gcaacgatgg tcaggacctt
      361 cgtggtgccg agagccacgt cgacctcgac ctcggcgatc tgcgcggcga agccgtaggt
      421 ggcgtaagga acgccctggc cgttctcgtc gagcggcgac gtcggcgggt cgtacgtgcc
      481 gagcccctcg agcacgatgc cgcccgcacc cgcaggcagt tgcgacaggt cgacggtgcg
      541 ccgggctgct tcccggatca gcagcgtcgc gtcctcgagc gcgatcgagg ccccctcgcc
      601 cacgttggcg aggctgagga tcttgcggcg caggtcttcg cccgcgaggc gggcggcatt
      661 gcccgacacg aaggtctggc gggaggcgga ggtcttgccg gcgtcggccg tgagcgccgt
      721 gtcgccgacg accagatcga accgatccag gggcaggccg agcgcgtcgg cgaggatctg
      781 cgccagcacg gtcgtcgagc cctggccgat gtcgacggcg ccgttgtgga acgtgagcct
      841 gccctcgcgc gaaagggtga cgcgcatggt cgaggggttg gggagcgcgg tgttgccgca
      901 gccgtaccac atgcagccga tgccggcgcc gcggcggcgg cgcgggttcg cggcgttgtg
      961 cgcgacgacg cgggcgagca tggcgtccca ctcgggcttc agcgcgtcga ggcaggcggg
     1021 cagcccggcc gaggacgtca gcacctgccc ggacggcgtg cggtcgccga cgctgagcgc
     1081 gttgtggcgg cgcatgtccc agcggtcgat gccgagcgct tgcgccaagt cgtccatcag
     1141 gcactcgtgc gcgatcgccg cctgcggcac gccgaagccg cggaaggcgc cggacggcgg
     1201 tccgttggtg tagatcgcgc gcgcccggtt gcggacgtgc ggcacgcggt agggcccgct
     1261 cgcgtgcacc ggtacgcggt tggcgaccgt cggcccccac gaggcgtagg cgccggtgtc
     1321 gaaatcggcg tcgctctcgt aggacagaag cctgccgtcg cggtccgccg cggccctcgc
     1381 gctgatgcgc gccggatggc gcttcgtcga cgacgccatg gactcgatgc ggctgtagat
     1441 catgcgcacg ggccggcgca ccttccaggc cgcgacggcg aggagcggct gcaccgagac
     1501 gtcgagcttg ccgccgaagc cgcccccgca ggcgctcggc cggatgcgca cgttctcggg
     1561 cgggaggccc agcacgcgag cggtctcgtc gcggtccatg tagggggcct gcgtgcaggc
     1621 gaagacctcg atcgtgtccc gcccggtcgg cacggcgtag ccggcctcgg gctcgatgta
     1681 ggcgtgctcg acgaacgagg tctcgaacgc gccttgcgcg gtcgcggcgg cctcgcttcg
     1741 agcggcgtcg gggtcgccgc agctcaggga cccgcgcgtc agcacgttgt ccggacagct
     1801 ctcgtgcagg acggcggcgc cgggcgccag ggcggcatcg ggaccgacga tcggaggcag
     1861 gggcgaccag acgatcggca cgtcggcatc gtcgatcctg tcgagcgcct ccttcgtgcc
     1921 gacgagcccg agcaacgggt cgccgcggta gcgcacctcg cgttcggcaa agacgggctg
     1981 gtccttggtg ctcgggaaga tgccgaacgc gttctcgccg ggaacatcgg ccgcggtgac
     2041 gacggcctgg acaccggggc ggctcgcgcg gaatgcttcg aggtcgccga gcacgaaggt
     2101 cgcccgaggg tgcggggagc gcaccacgcg aagccagagc gcgtcggtcg gtgccgcatc
     2161 ggccccgaag cggtcagtcc cggcgacctt gggccagccg tcgagccgcg ggatgcgcgc
     2221 gccgacgtgc cggatcgcgt catcccggcc ggagcgcagc ggagagccgg gatcccatgc
     2281 tgagtctggc gccccgtcgt cgctgagatc ccgggtctcg cttcgctcgc ccgggatgac
     2341 gttgtgcgag gccgcgagca ccgcctcgac gatctgcacg tagcccgtgc agcggcacag
     2401 caccccgccg atggcgtcct cgacctgcgc gcgcgaggcc cgcgggtcgc gggcgaggag
     2461 gtccgccgcg gccatcagca tgccgggcgt gcagatgccg cactgcgccg cgccgtgctg
     2521 gtggaacgcg gcccgcaggc gatccgtcac gccgtccagt ccgcttcctt cgacggtgtg
     2581 gatctctcgg ccgtgcgcct gcgccgccgg cacgaggcag gcgcagacct gcgcgccgtc
     2641 gaggagcacc gtgcaggcgc cgcagtcgcc ggcgttgcag ccgatcttgg tgccggtaag
     2701 cccaagcgcg tcgcgcaaga cgtcgccgag cgtcgcgaac gggtggacga gggccgtgcg
     2761 cggctcgccg ttcaccgtga gggcgatctc gacggcggtc gtttgcggcg cgcgatggag
     2821 gttcatgcgg ccctcctgcc agcatggtcg gagaaaccgg agaggaggtc gccgacgagc
     2881 gcctgcgcgg cgcc
//
LOCUS       DASQWN010000493         3118 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_835268, whole genome shotgun sequence.
ACCESSION   DASQWN010000493 DASQWN010000000
VERSION     DASQWN010000493.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 3118)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3118)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3118
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_835268"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            26..988
                     /locus_tag="VE686_09220"
     CDS             26..988
                     /locus_tag="VE686_09220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009763343.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTP-binding protein"
                     /protein_id="HYY84663.1"
                     /translation="MQDKIPVTVLTGYLGAGKTTLLNRILSEPHGKKYAVIVNEFGEI
                     GIDNDLVVGADEEVFEMNNGCVCCTVRGDLIRIMDGLIKRKGKFDAIIVETTGLADPA
                     PVAQTFFVDQDVSDAARLDAVVTVADAKWLSDRLKDAPEAKNQIAFADVIVLNKIDLV
                     SGQELDEVEGRIRAINPYAKLHRTQNCAVPIAEVLERNAFDLDRIIELEPDFLEEGHH
                     HHHDEDIQSLSIRHEGEVDPDRFMPWISDLTQREGPNILRCKGIVAFPQEPKRFVFQG
                     VHMILDGDVQGDWKPGEKRESRVVFIGRDLDERAIRDGFLACAA"
     gene            1038..2045
                     /locus_tag="VE686_09225"
     CDS             1038..2045
                     /locus_tag="VE686_09225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012330831.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="WD40 repeat domain-containing protein"
                     /protein_id="HYY84664.1"
                     /translation="MSSTAAPSLTEAVTPVAADAHVVGTVWLRDTAAFAAADGGVLLV
                     KDGATHRTQAHPDAGILVAAGDGERLLTGGDDGRVAVTGADGSTRTLAETKGAWIDAL
                     AVHPGGAFAFSVAKNVTARDDKGREKTYQAPSSVRGLSFAPKGYRLALSHYNGATLWF
                     PNLDATPEALEWKGSHIDVTWSPDGRFVVTSMQENALHGWRLLPDKGHMRMSGYPAKT
                     RSVSWSHDGAWLATSGAEAAICWPFASKEGPMGKAPRECGVRNSKVSRVAFHPRSLVL
                     AAGYDDGCILLIRLTDASELLVRHPAEDSAVTAFGWDKLGRRLAFGCADGQAGVLTLP
                     A"
     gene            2112..2354
                     /locus_tag="VE686_09230"
     CDS             2112..2354
                     /locus_tag="VE686_09230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019905529.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY84665.1"
                     /translation="MKAWAVAILGGSAETTVAVNEIVCLDPGCPGTETVILIMHPGGR
                     TRAAKVGKPVDEVTEDEVAEALARDPPTPRHEVVRP"
     gene            2542..3060
                     /locus_tag="VE686_09235"
     CDS             2542..3060
                     /locus_tag="VE686_09235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010683527.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2937 family protein"
                     /protein_id="HYY84666.1"
                     /translation="MPRIARTLGLAFGLVGGVVASQGPEFAQQYRQRLGGAVDELRRV
                     VERFDADAQGTGQTRDGAIANLQGNPDRLASAQGEAMRANTARLERLERQRRDLAEAG
                     PVARAYLLASEGDTDIMRAAFRDYEPAIPTTAGGLTIAGIGFVIGYALSRLLGVPLRR
                     LFSRRRRPLRAA"
BASE COUNT          499 a         1138 c         1035 g          446 t
ORIGIN      
        1 ccggtccgcc gccctggagt tcacgatgca agacaagatc cccgtcacgg tcctcaccgg
       61 ctatctcggc gccggcaaga cgaccctcct caaccgcatc ctgagcgagc cgcacggcaa
      121 gaaatacgcg gtgatcgtca acgagttcgg cgagatcggc atcgacaacg acctcgtcgt
      181 cggcgccgac gaggaagtct tcgagatgaa caacggctgc gtctgctgca ccgtgcgcgg
      241 cgacctcatc cgcatcatgg acggcctcat caagcgcaag ggcaagttcg acgccatcat
      301 cgtcgagacc accggcctcg ccgacccggc ccccgtggcg cagaccttct tcgtcgacca
      361 ggacgtatcg gacgccgccc gcctcgacgc cgtcgtcacc gtcgccgacg ccaagtggct
      421 ctccgaccgc ctcaaggacg cgcccgaggc gaagaaccag atcgccttcg ccgacgtcat
      481 cgtcctcaac aagatcgatc tcgtctcggg ccaagagctc gacgaggtcg aggggcgcat
      541 ccgcgccatc aatccttatg ccaagctcca ccgcacgcag aattgcgccg tgccgatcgc
      601 cgaggtgctc gagcgcaacg ccttcgacct cgaccgcatc atcgagctgg agccggactt
      661 cctcgaggag ggtcatcacc accatcatga cgaggacatc cagtccctgt cgatccgcca
      721 cgagggcgag gtcgatcccg accgcttcat gccgtggatc tcggatctga cgcagcgcga
      781 ggggcctaac atcctgcgct gcaagggaat tgtcgcgttt ccgcaggagc ccaagcgctt
      841 cgtcttccag ggcgtgcaca tgatcctcga cggcgacgtg cagggcgact ggaagcccgg
      901 cgagaagcgc gagtcccgcg tcgttttcat cggccgcgac ctcgacgaga gggcaatccg
      961 cgacggtttc ctggcctgcg ccgcatgaat cctggacaaa tcccggatga atctcatgag
     1021 cgtcgcgtga gtctcccatg agctcgaccg ccgccccctc cctcacggaa gccgtgacgc
     1081 cggtcgcggc ggacgcgcac gtcgtcggca ccgtgtggct gcgagacacc gcggccttcg
     1141 cggcggccga cgggggcgtg ctcctcgtga aggacggcgc gacgcaccgt acgcaggcgc
     1201 atccggacgc cggcatcctc gtcgcggcag gcgacggcga gcgcctgctc accggcggcg
     1261 acgacgggcg tgtcgccgtc acgggcgctg acggctctac ccgtacgctg gccgagacca
     1321 agggcgcctg gatcgatgcg ctcgcggtcc atccaggcgg cgccttcgcc ttcagcgtgg
     1381 ctaagaacgt cacggcccgc gatgacaagg gccgcgagaa gacctaccaa gcgccctcga
     1441 gcgtgcgcgg gctgtccttc gcgcccaagg gttaccggct cgccctgtcg cactacaacg
     1501 gcgcgaccct gtggttcccg aatctcgacg ccacccccga ggcgctcgag tggaagggct
     1561 cgcacatcga cgtgacctgg tcgcccgatg ggcgcttcgt ggtcacctcg atgcaggaga
     1621 acgccctgca cggctggcgc ctcctgcccg acaagggcca catgcgcatg agcggctatc
     1681 cggccaagac ccgctcggtg tcgtggtcgc atgacggcgc ttggctggcc acgagcggcg
     1741 ccgaggcggc catctgctgg cctttcgcct cgaaggaagg tcccatgggc aaggcgccgc
     1801 gcgagtgcgg cgtgcggaac tcgaaggtgt cgcgcgtcgc cttccacccg cgcagcctcg
     1861 tgcttgcggc cggctacgac gacggctgca tcctcctgat ccggctgacc gacgcctccg
     1921 agctcctcgt gcgccatccg gccgaggaca gcgcggtcac ggccttcggg tgggacaagc
     1981 tcggacgccg cctcgcgttc ggctgcgccg acggccaggc cggcgtcctg accctgcccg
     2041 cctgagcgat gtcgttccgc gactggctcc gcggcggccg tcgccggccc gagagggaag
     2101 ccatcgcacg cgtgaaggcc tgggccgtgg cgatcctcgg cggcagcgcc gagaccaccg
     2161 tcgccgtcaa cgagatcgtc tgcctcgacc ccggctgccc cggcaccgag acggtgatcc
     2221 tgatcatgca ccccggcggc aggacgcggg ccgcaaaggt cgggaagccg gtagacgagg
     2281 tgacggaaga cgaagtcgcc gaggccctcg cccgggatcc gccgaccccg cggcacgagg
     2341 tcgtgcgccc atagtcacct gcagcgcact ttgtggtgat cgccgtccgg gcggcaccgc
     2401 tcgcgtcgag agcgacgtgc accgccatgc tgatggccgg ggcgcgcgca ccatcatcac
     2461 gatggaagcg cgggcgcgcc ctcgctacga ggatcgcgga accgcgagcc catggcaggc
     2521 ttggtcaggc gaggaggagc catgccccgc atcgcccgta cccttggcct tgccttcggg
     2581 ctcgtgggcg gcgtggtcgc ctcgcagggg ccggagttcg cgcagcaata ccggcagcgc
     2641 ctcggtggtg ctgtcgacga gttgcggcgc gtcgtcgagc gcttcgatgc cgacgcgcaa
     2701 ggcaccggtc agacacgcga cggagccatc gcaaacctcc agggcaaccc ggatcggctt
     2761 gcaagcgcgc aaggcgaggc gatgcgggcc aacactgcga ggctcgagcg gctcgagcgc
     2821 cagcggcgcg acctcgccga ggccgggccg gtcgcgcgcg cctacctgct ggcgagcgag
     2881 ggcgacacgg acatcatgcg cgccgccttc cgcgactacg aacccgcgat ccccaccacc
     2941 gccggtggcc tgaccatcgc gggcattggc ttcgtgatcg ggtacgcgct ctcgcgcctc
     3001 ctcggcgtgc ccctgcgccg gctcttctcc cgccggcgtc gacccctgcg cgcggcgtga
     3061 gcactccgcc gtcatcctca gccggagcga agcgcagacc cgaggacctc gggatgcg
//
LOCUS       DASQWN010000494         2457 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1277129, whole genome shotgun sequence.
ACCESSION   DASQWN010000494 DASQWN010000000
VERSION     DASQWN010000494.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2457)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2457)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2457
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1277129"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            52..1143
                     /locus_tag="VE686_09240"
     CDS             52..1143
                     /locus_tag="VE686_09240"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012517.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LLM class flavin-dependent oxidoreductase"
                     /protein_id="HYY84667.1"
                     /translation="MRFSIYSELQHHGDKPYAQLYHEVLEQIEHAERVGFDVYTVIEH
                     WFFPQFSISANPWALFGMAAERTSRIHFRTLGHPLPYHNPAVLASQIAQFDILSGGRY
                     EFGVVRGHGWIPTKAGLDPRTTRDLYEESLEILFLALEQERFSYAGKHYQVEDSHIVP
                     RLPEGRRPRVFLGGTSDRTYELAGENGWCVAVPPLLPYEALKDQLDIYREFCAKHGNE
                     PYIVWIHAAYIDEDRETARREAERGMRGFLTGNASPLLAGNELPPNEVLQEAGFGFYA
                     AGILEKLAATPYDEMLSGDVVWVGTPDDVAERIEAVIEKCEGVKEIAITTNAGGFEHW
                     KAIKAQQLFAETVIPRFRAEQQAPLEVTA"
     gene            1140..2390
                     /locus_tag="VE686_09245"
     CDS             1140..2390
                     /locus_tag="VE686_09245"
                     /inference="COORDINATES: protein motif:HMM:NF024850.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HYY84668.1"
                     /translation="MNWLSARLALLALLAIAALGVAACGDDDDDGGDGGSNASGEKEK
                     AESGPIKIGAAVDQTKLMKFFDGPALAAAQIRADEINADGGVDGRKLEFTVQNTRLDP
                     GRTKSVASDLVNGGADVMWVTCDVDWATPAVQEGINADLLTVAPCIGTDQMGPKRFGD
                     QGKLAFSYGNVAQDEGAALAKMAKDKGWKSATIVTDKSIVYTQNACQAFKQRFEENGG
                     KIAAEESFTEGDGTINSVVRNVNDADADTIAICATTQQDLPAFVSGVRGGGNKTPIIG
                     PWSIDGAFWLPKSKSVSNDIYLVTYASIYGDDPNPDVRKLIDQLKKAGAPPATGGFVT
                     GAAAIDGIAAAVKENNGSTDGPALAKSMEGFTDLETISGKVSFNEQFHSAFGREYRII
                     EIKNGKPHFAGMVEAGDPVEFEGG"
BASE COUNT          469 a          796 c          839 g          353 t
ORIGIN      
        1 tgatcaaata acagatagcg tcgccgtggg gacgaggaga ggaatgccgg gatgagattc
       61 agcatctatt ccgagctgca gcaccacggc gacaagccgt acgcgcagct ctaccacgag
      121 gtgctcgagc agatcgagca cgcagagcgc gtcgggttcg acgtgtacac ggtgatcgag
      181 cactggttct tcccccagtt ctcgatctcg gccaatccct gggcactgtt cggcatggcg
      241 gcggagcgca ccagccgcat ccacttccgc acgctcggtc acccgctgcc gtaccacaac
      301 ccggcggtgc tggcctcgca gatcgcccag ttcgacatcc tctcgggcgg tcgctacgaa
      361 ttcggcgtcg tccgcgggca cggctggatt ccgaccaagg cgggcctcga tccgcgcacg
      421 acccgcgacc tctacgagga atcgctcgag atcctgttcc tcgcgctcga gcaggagcgc
      481 ttctcctacg ccggcaagca ctaccaggtc gaggattcgc acatagttcc gcgcctgccg
      541 gaggggcgca ggccgcgcgt ctttctcggc ggaaccagcg atcgcacgta cgagctggcc
      601 ggcgagaacg gctggtgcgt cgccgtcccg ccgcttctgc cctacgaggc attgaaggat
      661 cagctcgaca tctaccgcga gttctgcgcg aagcacggca acgagccgta catcgtctgg
      721 atccatgccg cctacatcga cgaggaccgc gagacggccc gtcgcgaggc cgagcggggc
      781 atgcgcggct tcttgaccgg caacgcctcg ccgctgctgg cgggcaacga gctgccgccg
      841 aacgaggtgc tgcaggaggc gggcttcggc ttctacgccg ccgggatcct cgagaagctc
      901 gcggcgacgc cgtacgacga gatgctctcc ggagacgtcg tctgggttgg aactcccgac
      961 gacgtggcag agcgcatcga ggcggtgatc gagaagtgcg agggcgtgaa ggagatcgcc
     1021 atcaccacca acgccggcgg cttcgaacac tggaaggcga tcaaggcaca gcagttgttt
     1081 gcggaaacgg tgattccgcg cttccgcgcg gagcaacagg cacccttgga ggtgacggca
     1141 tgaactggct cagcgcaagg ctcgcgcttc tggcgctgct ggcgatcgcg gcgctcggag
     1201 tggccgcttg cggggacgac gacgacgacg gcggagacgg cggttcgaat gcctccgggg
     1261 agaaggagaa ggccgagagc gggccgatca agatcggcgc cgccgtcgac cagacgaagc
     1321 tgatgaagtt cttcgacggc cccgcgctcg cggcggcgca gatccgcgcc gacgagatca
     1381 acgccgacgg cggcgtcgat ggccgcaagc tcgagttcac cgtccagaac acgcgactgg
     1441 atcccgggcg caccaagtcg gtggcctcag acctcgtgaa cggcggcgcg gacgtcatgt
     1501 gggtcacctg cgacgtcgac tgggcgacgc cggcggttca ggagggcatc aacgccgacc
     1561 tgctcacggt cgccccctgc atcggcacgg accagatggg cccgaagcgc ttcggggacc
     1621 agggcaagct cgcgttcagc tacggcaacg tggcccagga cgagggtgcg gccctggcca
     1681 agatggccaa ggacaagggg tggaagtccg ccacgatcgt gacggacaag tcgatcgtct
     1741 acacgcagaa cgcgtgccag gccttcaagc agcgcttcga ggagaacggc ggcaagatcg
     1801 cggccgagga gtcgttcacc gaaggcgatg ggacgatcaa cagcgtcgtc cgaaacgtga
     1861 acgacgccga cgccgacacg atcgcaatct gcgcgaccac tcagcaggac ctgcccgcct
     1921 tcgtatcggg cgtgcgcggg ggtggcaaca agacgccgat catcggcccc tggtcgatcg
     1981 acggcgcctt ctggctgccg aagagcaaga gcgtgtcgaa cgacatctat ctggtcacgt
     2041 acgcctcgat ctacggggat gacccgaacc cggacgtgcg caagctgatc gaccagttga
     2101 agaaggccgg cgcgccgccg gcgaccggcg gcttcgtgac cggcgcggcc gcgatcgacg
     2161 gcatcgccgc cgccgtgaag gagaacaacg gatccaccga cgggccggcg ctggccaagt
     2221 cgatggaggg cttcaccgat ctggaaacca tctccggcaa ggtgagcttc aacgagcagt
     2281 tccacagcgc cttcggtcgc gaatatcgga tcatcgagat caagaacggc aagccgcact
     2341 tcgccgggat ggtggaggcc ggcgacccgg tggaattcga ggggggctga gccacacgtg
     2401 gaaggcctgc gggccaccgg ggtcgcccgc gccttcgagg gcgtagccgc cctccaa
//
LOCUS       DASQWN010000495         4422 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1176952, whole genome shotgun sequence.
ACCESSION   DASQWN010000495 DASQWN010000000
VERSION     DASQWN010000495.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 4422)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4422)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4422
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1176952"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1009)
                     /gene="hflX"
                     /locus_tag="VE686_09250"
     CDS             complement(<1..1009)
                     /gene="hflX"
                     /locus_tag="VE686_09250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003600263.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_process: GO:0008150 - biological_process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase HflX"
                     /protein_id="HYY84669.1"
                     /translation="MTEPRSPGEERLARLAEPEKDVASGTRTLVVGPYLTRRRPGGGR
                     PGAATERANPRPADARLDEAAGLAAAIDLQVVGTLLAPLAAIRPATYLGKGKVEELAG
                     RIRAEEIGLVVMDCALGPVQQRNLEKEWGCKVIDRTGLILEIFGRRARTREGALQVEL
                     AHLSYQKGRLVRSWTHLERQRGGFGFLGGPGETQIEADRRLIQERMTRIERDLETVKQ
                     TRELHRTSRRRVPYPIVALVGYTNAGKSTLFNRLTAADVLAENMLFATLDPTSRAIKL
                     PHGETVILSDTVGFISDLPTMLVAAFRATLEDVIEADVLLHVRDISHGETDAEAADVE
                     GV"
     gene            complement(1011..1265)
                     /gene="hfq"
                     /locus_tag="VE686_09255"
     CDS             complement(1011..1265)
                     /gene="hfq"
                     /locus_tag="VE686_09255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007563033.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA chaperone Hfq"
                     /protein_id="HYY84670.1"
                     /translation="MAGDRAQNLQDTFLNHVRKNKIPLTIFLVNGVKLQGVVTWFDNF
                     CVLLRRDGHSQLVYKHAISTIMPGHPVQLFDQPEEGGEKA"
     gene            complement(1430..2800)
                     /locus_tag="VE686_09260"
     CDS             complement(1430..2800)
                     /locus_tag="VE686_09260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009491223.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-54 dependent transcriptional regulator"
                     /protein_id="HYY84671.1"
                     /translation="MSTDILIVDDEADIRDLVAGILDDEGHRTRTAGSADEALAAVEA
                     RRPHLVFLDIWLQGSRLDGLQVLELIKAQHPDLPVVMISGHGNIETAVSAIKAGAYDF
                     IEKPFKADRLVLVADRALEASRLKREVKDLKARSVQASRIVGHSPAVNQLRQTIERVA
                     PTNARILVTGAPGAGKELAARTIHSLSARAAGPFVVINAATITPETMEAELFGIEGGE
                     GRGRRVGALEEAHGGTLYIDEIADMPRETQSRILRVLVDQNFQRVGGTTRVHVDVRIV
                     SSSSRDLAVEIAGGRFREDLFHRLSVVPIRVPSLSERREDVPELIDFFMDQISAATGL
                     ARRRIASDALAVLQTHDWPGNVRQLRNNVERLMILSTGDLEGEVTAEMLPSEVGALVP
                     TTPNGAGGEKLMSLPLRDAREIFEREYLLAQIARFSGNISRTAEFIGMERSALHRKLK
                     SLGIGG"
     gene            complement(2797..>4422)
                     /locus_tag="VE686_09265"
     CDS             complement(2797..>4422)
                     /locus_tag="VE686_09265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018263732.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PAS domain-containing sensor histidine kinase"
                     /protein_id="HYY84672.1"
                     /translation="DPKPLDNLAPLSSDDLKEVNQTDAICLLPRSGNIFRAALALEAH
                     QGRILFVARAVDPRATEFPPLAQAGVAYYQALEQKKLGIQVAFASMFALIAFIVLLSA
                     VWFGLTFANRLVAPVRRLIHATDQVATGNFYVQVPVRKSESDLAHLGETFNKMTSELR
                     RQHDGLVAASDLIDRRRRFMEAVLSGVPAGLIGVDGRGVITIVNPSTEALLARSRNEL
                     MGKPIVTVLPELEPLLEEARSGRQRLIERQILISRAGRERTLNVRVTSEHSGVDERDL
                     VITLDDITDLVTAQRTSAWADVARRIAHEIKNPLTPIQLSAERIRRKYGKVIVTDREV
                     FDQCTDTIVRQVDDIKRMVDEFSSFARMPKPRMGEDDVVEIVRQVAFMMRIAHPEIVF
                     TEDLPEGPLPMHVDRRLISQAVTNIVKNATEAIAAVPEEERGEARIEVALRAAEDGVV
                     TIEVTDTGKGFPVEARQRLLEPYMTTRDGGTGLGLAIVSRILEDHGGGIELADNPAGR
                     GGRVRLWFRNTSGAGDNERAGAAAAPGYARTIS"
BASE COUNT          680 a         1469 c         1531 g          742 t
ORIGIN      
        1 gaactccctc gacatccgct gcttccgcat ccgtctcgcc atgcgagatg tcgcggacat
       61 gaagaaggac gtcggcctcg atgacatcct cgagggttgc ccggaaggcc gcgaccagca
      121 tggtcggcag atcggagatg aagccgacgg tgtcggacag gatcaccgtc tcgccgtgcg
      181 gcagcttgat cgcgcgcgag gtcgggtcga gggtcgcgaa cagcatgttc tcggcgagca
      241 cgtcggccgc cgtgaggcgg ttgaagagcg tcgacttgcc ggcattggtg tagccgacga
      301 gcgccacgat ggggtacggc acccgccgcc tgctggtgcg gtgcagctcg cgggtttgct
      361 tcaccgtctc caggtcgcgc tcgatgcggg tcatgcgctc ctggatgagg cgccggtcgg
      421 cttcgatctg cgtctcaccg gggccgccca ggaagccgaa gccgccgcgc tggcgctcga
      481 ggtgggtcca cgaccgcacg aggcggccct tctggtacga cagatgggca agctcgacct
      541 ggagagcgcc ctcgcgggtg cgggcgcgcc ggccgaagat ctccaggatc aatcctgtgc
      601 ggtcgatgac cttgcagccc cactccttct cgaggttgcg ctgctgcacc ggaccgagcg
      661 cgcaatccat cacgacgagc ccgatctcct cggcccggat gcgccctgcg agctcctcga
      721 ccttgccctt gcccaggtag gttgctggcc tgatcgcggc gagcggagcc aggagcgttc
      781 cgacgacctg gaggtcgatg gcggcagcga gcccagcagc ctcgtcgagc ctggcgtccg
      841 cagggcgagg gttggcccgc tccgttgccg cacccgggcg ccctcctccc ggccgacgcc
      901 gcgtgaggta gggtccgacg accagggtac gggtgccgga ggcgacgtcc ttctcgggct
      961 ccgcgagccg cgcgagccgc tcttctcccg gcgagcgggg ttccgtcacc tcaagccttc
     1021 tcgccgcctt cctcgggctg atcgaagagt tggaccgggt ggcccggcat gatcgtcgag
     1081 atcgcgtgct tgtacacgag ctgcgaatgg ccatcccggc gcaggaggac gcagaaattg
     1141 tcgaaccagg tcaccacgcc ctgtagcttc acgccgttca cgaggaagat cgtgagggga
     1201 atcttgttct tgcggacgtg gttgaggaac gtgtcctgca gattttgcgc gcgatcgccc
     1261 gccatggaag ttgcctcgta gcccgctgcc gccgatcatg gccgcgtgcc gcgccaaggt
     1321 gtggttacgg gctgcgaaca gcccggaccg gcccgcgtat tacaaggcgt agcgtggctt
     1381 tacgcaagag gcagggttgg caaaacgctc ttgcgggcga aaaaccccgt cagccgccga
     1441 tcccgagcga cttcagcttc cggtgcagcg cggaccgctc catgccgatg aattccgccg
     1501 tgcgggagat attcccgctg aaccgggcga tctgggccag cagatactcg cgctcgaata
     1561 tctcgcgggc gtcgcgcagc ggcaggctca tcagcttttc gccccctgcc ccgttcgggg
     1621 ttgtcggcac gagggcccca acctcggagg gaagcatctc ggccgtgacc tcgccctcga
     1681 ggtcgccggt agacaggatc atcaggcgct caacgttgtt gcgcagctgc cggacgttcc
     1741 cgggccaatc gtgcgtctgc aggaccgcga gagcgtcact cgcaatccgg cgccgggcga
     1801 ggcccgtcgc agccgagatc tggtccatga agaagtcgat gagctcgggc acgtcctcgc
     1861 gccgctccga caaggacggc acgcggatag gcaccacgct gagccggtgg aacaggtcct
     1921 cgcggaagcg cccgcccgcg atctcgaccg cgagatcgcg gctcgatgac gacacgatgc
     1981 ggacatcgac gtgaacgcgg gtcgtcccgc cgacgcgctg gaagttctgg tcgacgagga
     2041 cgcgcaggat gcggctctgc gtctcccgcg gcatgtcggc gatctcgtcg atgtagaggg
     2101 tcccgccgtg cgcctcctca agcgcgccga cgcggcgccc ccggccctcc ccgccctcga
     2161 tgccgaagag ctccgcctcc atggtttcgg gcgtgatcgt cgccgcgttg ataaccacga
     2221 acggcccggc ggctcgtgcc gagagcgagt ggatggtgcg cgccgcgagc tccttgccgg
     2281 cgccgggcgc accggtgacc aggatgcgcg cgttcgtggg cgcgacccgc tcgatcgtct
     2341 ggcggagctg gttgaccgcg ggcgagtggc cgacgatccg gctcgcctgg acggagcggg
     2401 ccttgaggtc cttgacctcg cgcttgaggc gggaggcctc gagggcccgg tcggcgacga
     2461 gcacgaggcg gtcggccttg aacggcttct caatgaaatc ataagcgccg gccttgatgg
     2521 ccgagacggc cgtctcgatg ttgccgtggc ccgagatcat cacaaccggc aggtcggggt
     2581 gttgtgcctt gatgagctcg agcacctgca ggccgtcgag ccggctgccc tgaagccaaa
     2641 tgtcgaggaa cacgagatgg ggtcggcgcg cctcgacggc ggcgagcgcc tcgtcggcgc
     2701 tcccggcagt acgggtccgg tgcccttcgt cgtccaggat gcccgcgacg aggtcgcgga
     2761 tgtcggcctc gtcatcgacg atgaggatgt ccgtgctcat gagatggtcc tggcgtaacc
     2821 cggggcggcg gcagcgccgg cccgctcgtt gtcacccgca cccgaggtgt tgcggaacca
     2881 caggcgcacc cgcccaccgc gtcccgccgg attgtcggcg agctcgattc cacccccgtg
     2941 gtcttccaaa atcctgctga cgatcgcaag gcccaagccg gtgccgccgt cccgcgtcgt
     3001 catatacggc tcgagaagcc gctgccgcgc ctcgacagga aaacccttgc cggtgtcggt
     3061 cacttcgatg gtgacgacgc cgtcctcggc ggcgcgcagc gcaacctcga tgcgcgcctc
     3121 ccccctctcc tcctcgggca ccgcggcgat ggcttcggtg gcgttcttga cgatgttcgt
     3181 caccgcctgg gagatgagac gccggtcgac gtgcatgggc agcggcccct ccgggaggtc
     3241 ttcggtaaag acgatctcgg gatgcgcgat tcgcatcatg aaggccacct gccgcacgat
     3301 ctcgacgaca tcgtcttcgc ccatacgggg cttgggcatc cgcgcgaagg acgaaaactc
     3361 gtcgaccatg cgcttgatgt cgtcgacctg gcgcacgatc gtgtccgtgc actgatcgaa
     3421 gacttcccgg tcggtgacga tcaccttgcc gtacttgcgc cggatacgct cggccgagag
     3481 ctggatcggg gtcagcgggt tcttgatctc gtgcgcgatg cggcgcgcca cgtcggccca
     3541 ggccgaagtg cgttgcgccg tcacgaggtc ggtgatgtcg tcgagggtga tgacgaggtc
     3601 cctctcgtcg acgccggagt gctcgctcgt cacccgcaca ttcaacgtgc gctcgcgtcc
     3661 ggcacgggag atcaggatct gccgctcgat gagccgctgc cgccccgagc gcgcttcctc
     3721 gagcagcggc tcgagctcgg gcaggactgt gacgatcggc ttgcccatca gctcgttgcg
     3781 cgaccgtgcg agcagggcct cggtcgaggg attgacgatc gtgatgaccc ctcggccgtc
     3841 gacgccgatc aggcccgccg ggacacccga cagcaccgct tccatgaagc ggcggcgccg
     3901 atcaatgagg tcgcttgccg cgaccaggcc gtcgtgctgg cggcgtagct ccgaggtcat
     3961 cttgttgaac gtttcgccga ggtgggcgag atcgctctcg ctcttccgga ccggcacctg
     4021 gacgtagaag ttcccggtcg ccacctggtc ggttgcgtgg atgaggcggc gcaccggcgc
     4081 gacgaggcgg ttggcgaagg taagcccgaa ccagacggcc gagagcagga cgatgaaggc
     4141 gatcagcgcg aacatcgacg cgaaggcgac ctggatgccg agcttcttct gctcgagggc
     4201 ttggtagtag gcgactcccg cctgtgccag cggcgggaac tccgtcgcgc gcggatcgac
     4261 agcccgggcg acgaacagaa tccgcccctg atgcgcctcg agggcgaggg ccgcacggaa
     4321 gatgttgccg ctacgcggca ggaggcagat cgcgtctgtc tggttcactt ccttgaggtc
     4381 gtcgctcgag agaggcgcga ggttgtcgag cggcttcggg tc
//
LOCUS       DASQWN010000496         2083 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1476609, whole genome shotgun sequence.
ACCESSION   DASQWN010000496 DASQWN010000000
VERSION     DASQWN010000496.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2083)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2083)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2083
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1476609"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..658)
                     /locus_tag="VE686_09270"
     CDS             complement(<1..658)
                     /locus_tag="VE686_09270"
                     /EC_number="7.4.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008131635.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0033232 - ABC-type D-methionine
                     transporter activity [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0048473 - D-methionine transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methionine ABC transporter permease"
                     /protein_id="HYY84673.1"
                     /translation="MSPEMIRLIANSTGETLYMVAVAALIATAFGLPLGVFLATSGKG
                     ELFAAPWVNRVLGVVVNATRSTPFIILVVAIIPFTRLIAGTSIGTNAAIVPLTIAATP
                     FIARLIEGAIREVDQGLIEAARAFGASPLQIVGKVLIPEALPGIVLGLTLAVVSLLGF
                     SAMVGAVGGGGLGDLGIRYGYQRFMPEMMLAVVVVLIVLVQAVQSIGDRLARNLNKRI
                     R"
     gene            complement(648..1742)
                     /locus_tag="VE686_09275"
     CDS             complement(648..1742)
                     /locus_tag="VE686_09275"
                     /EC_number="7.4.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009763852.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0033232 - ABC-type D-methionine
                     transporter activity [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0048473 - D-methionine transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methionine ABC transporter ATP-binding protein"
                     /protein_id="HYY84674.1"
                     /translation="MNAPLGYLGDQPAQRLIPAEPIVRLEKTSKTFPGRDGQPVTALQ
                     EINLAVPQGSILGVIGRSGAGKSTLIRLVNGLEKPTSGKVIVDGADIAALPEAALRHA
                     RRSIGMIFQHFNLLSSRTAAQNIALPLEVAGYDKAEIKTRVEELLALVGLSDKRNRYP
                     SELSGGQKQRVGIARALATKPKVLLSDEATSALDPETTRSILDLLGRINDELGLTILL
                     ITHEMAVIRNIAREVAVIEGGRIVEQGDVFEVFTRPQHEVTRSFLADESGRALPPYVQ
                     SRLRPEATPGSQAVIRIGFRGPHATDPVLARLARDLNIETNILSGSVDEIAGRPFGTL
                     VVGVPEQSLATTLDFLNKHGLDTEVLGHVA"
BASE COUNT          376 a          611 c          736 g          360 t
ORIGIN      
        1 gacggatgcg cttgttgagg ttgcgcgcga ggcgatcgcc gatgctctgc acggcctgga
       61 cgaggacgat gagcacgacc acgacggcga gcatcatctc gggcatgaag cgctggtagc
      121 cgtaccggat gccgagatcg ccgaggccgc cgccgccgac tgcacccacc atggccgaga
      181 agccgagaag cgacacgacc gcgagcgtca ggccgagaac gatgccgggc agggcttccg
      241 ggatcagcac cttgccgacg atctgcagcg ggcttgcgcc gaaggcgcgc gcagcctcga
      301 tcagtccctg gtcaacctcg cggatcgcgc cttcgatgag acgcgcgatg aaaggcgtag
      361 cagcgatcgt cagcggcacg atggcggcat tggtgccgat ggacgtgccg gcgatcagac
      421 gcgtgaaggg aatgatcgcc acgacgagaa tgataaacgg cgtcgagcgg gtggcgttga
      481 cgacgacgcc gagcacgcga ttgacccagg gcgcggcaaa gagctcgccc ttgccggacg
      541 tggcgagaaa cacgccgagc ggcagaccga aggcggtggc gatcagcgcc gcgaccgcga
      601 ccatgtagag ggtttcgccg gtggaattgg cgatgaggcg gatcatctca ggcgacatgg
      661 ccgaggacct ccgtgtcgag accgtgcttg ttcaggaaat cgagtgttgt ggcgagggac
      721 tgctccggga cacccacaac gagggtgccg aacgggcggc ctgcgatttc gtccaccgag
      781 cccgacagga tgttggtctc gatgttgaga tcgcgcgcga gccgcgcgag aaccggatcc
      841 gtcgcatgcg gaccgcggaa gccgatccgg atgaccgcct ggctgccggg cgtcgcctcg
      901 ggccgaagcc tgctctgcac gtagggcggc agcgcgcggc cggactcgtc ggccaggaag
      961 gagcgggtga cttcgtgctg cggacgggtg aagacctcga acacgtcgcc ctgctcaacg
     1021 atgcgtcctc cttcgatcac cgcgacctcg cgggcgatgt tgcggatgac cgccatctcg
     1081 tgggtgatga gcaggatggt cagtccgagc tcgtcgttga tgcggccgag caggtcgagg
     1141 atcgaacggg tggtttccgg gtcgagggcc gaagttgcct cgtccgacag gagaaccttg
     1201 ggcttggtgg cgagcgcacg ggcgatgccg acgcgctgct tctggccgcc ggagagctcg
     1261 gacgggtagc ggttgcgctt gtccgagagg ccgacgaggg ccagcagctc ctcgacgcgg
     1321 gtcttgatct cggccttgtc atagcccgcg acctcgagcg gcagggcgat gttctgagcc
     1381 gccgtgcgcg aggaaagcag gttgaagtgc tggaagatca tgccgatgga gcgccgggca
     1441 tggcggaggg cggcctccgg aagggccgcg atatcggcgc cgtccacgat gaccttgccg
     1501 gaggtgggct tttcgagccc gttcaccaga cggatcaggg tcgactttcc ggcgccggaa
     1561 cggccgatca cgccgagaat ggagccctgg ggcacggcga ggttgatctc ctgcagcgcc
     1621 gtcacgggct ggccgtcacg gccggggaaa gtcttcgatg tcttttccag gcgcacgatg
     1681 ggctccgccg ggatcaggcg ctgggcaggc tggtcgccga gatatccaag aggggcgttc
     1741 atgaggtcgc cttttccagt gacgtcgggg atgtcgatat gacacatgaa acatcccgtt
     1801 ctctaagtca accttttcgt tctttaaaca ggacaatctg ctttgtcgaa cgcaacagcc
     1861 cattaacgcc ctattgctct tctcacaagg ctgctatcgc ttgtgccgga aggaagttcc
     1921 tcctttcttt cgccacaagc acgattgatc cggcttctca agatttctat gaagccgaga
     1981 acgggatctc ggcaggagat gtgtatgatc aaggcgagca ttacgctggc gctcgtaggt
     2041 ctgggcgtgt tggtggcctc cctgtccggg gcggctgccg ttc
//
LOCUS       DASQWN010000497         2917 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1476689, whole genome shotgun sequence.
ACCESSION   DASQWN010000497 DASQWN010000000
VERSION     DASQWN010000497.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2917)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2917)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2917
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1476689"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1329)
                     /locus_tag="VE686_09280"
     CDS             complement(<1..1329)
                     /locus_tag="VE686_09280"
                     /inference="COORDINATES: protein motif:HMM:NF012706.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HYY84675.1"
                     /translation="MPAKSSDALRLWSAAAAFALAALVPPASAQAQEKVLRAVMHADV
                     RTLDPFWTTQTIAGIHGVLVYDMLFGNDEQNRAHPQMVGKYDLSEDRKTYTFTLRDGL
                     KFHDGSPVTTKDVIASLKRWAARDPVGQRLMSFTDKLEAVDDKTFRLALKEPYSMVLE
                     SLGKTGTSVPVIMREKDALVDPNTQITEAIGSGPFKFAKDQWVPGSKTVYLKNTDYVP
                     RPGNEPPVVLSGSKIPKVDRIELVWISDPQTAMSALVSGEIDFYEQPSIDFLPILSKA
                     PGVKLMKTGKIDSTFGLIRLNHLHPPFDNVKARQAMYYLVKQDDFLRAIIGDPEYYTV
                     CHSLFICGSPLENDAGTAIAKEYNPKKALQLFKEAGYKGEPITVLQATDHVTITPATQ
                     VLVQAMRDAGLNVDAQTMDWGSVVSRRAKKEPPAQGGWSIFVTTSGTIGGS"
     gene            1739..>2917
                     /locus_tag="VE686_09285"
     CDS             1739..>2917
                     /locus_tag="VE686_09285"
                     /inference="COORDINATES: protein motif:HMM:NF019011.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M81 family metallopeptidase"
                     /protein_id="HYY84676.1"
                     /translation="MGPRIALLGFMLETNAFAPVADEAEFRQKHWLEGEDIVTDARSP
                     TPRDPGGLSGFCRAMDESGAWEPVPLAMTTAGASGPVEQGFFDRFVALIDERLRAALP
                     VDGVYIQAHGACRGTVDLDPEGTLFSTVRASVGPKIPVVATLDLHANVSRKMVEETDL
                     LIAYLTNPHTDHADRGHEAGQAMRELLAGVKTAKAFVRVPILPPQVALLSDRGPYGEA
                     IAKGQTRVGGPILNVSVLGNFSFGDYPKNGMSVIVTARGDQDAANALARELADDLWSE
                     RHRFTPRLLSIEEATSRMLEASEDPGKPALLFADCADNPGGGGRGNTTAILRSFLDAG
                     VTGAAFAVHTDPPLVAEAHRRGVGARFTALLNRDETDPSSEPLEAQAEVMQLSDGEIV
                     G"
BASE COUNT          436 a          979 c         1026 g          476 t
ORIGIN      
        1 cgagccgccg atcgtgccgg atgtcgtgac gaagatgctc cagccgcctt gcgccggcgg
       61 ctccttcttg gcgcgccggg agacgacgga gccccagtcc atcgtctgcg cgtcgacgtt
      121 gagcccggcg tcgcgcatcg cctgcacgag cacctgcgtc gccggcgtga tggtgacgtg
      181 gtccgtcgcc tgcaggacgg tgatgggctc gcccttgtag ccggcctcct tgaacagctg
      241 cagcgccttc ttggggttgt actccttggc gatcgccgtg ccggcgtcgt tctcgagggg
      301 cgagccgcag atgaacaggc tgtggcagac cgtgtagtac tccgggtcgc cgatgatggc
      361 gcgcaggaag tcgtcctgtt tcaccaggta gtacatggcc tggcgcgcct tcacgttgtc
      421 gaagggcggg tggaggtggt tgagacggat gaggccgaag gtcgagtcga tcttgccggt
      481 cttcatcagc ttgacgccag gcgccttcga caggatcggc aggaagtcga tgctcggctg
      541 ctcgtagaaa tcgatctcgc cgctgacgag cgccgacatg gcggtctgcg ggtcggagat
      601 ccacacgagc tcgatccggt cgaccttggg gatcttgctg ccggacagga cgacgggcgg
      661 ctcgttgccg gggcgcggca cgtagtcggt gttcttgagg tagacggtct tcgagcccgg
      721 gacccattgg tccttggcga acttgaacgg ccccgacccg atcgcttccg tgatctgggt
      781 gttcgggtcc acgagcgcgt ccttctcgcg catgatgacc ggcaccgagg tgccggtttt
      841 gcccagcgat tccagcacca tggagtacgg ctctttgagc gcgagccgga aggtcttgtc
      901 gtcgacggcc tcgagcttgt cggtgaacga catgagccgc tggccgacgg gatcgcgcgc
      961 cgcccaccgc ttcagggagg cgatcacgtc cttggtggtg acggggctgc cgtcgtggaa
     1021 cttgagcccg tcccggagcg tgaaggtgta ggtcttgcgg tcctcgctga ggtcgtactt
     1081 gccgaccatc tgcgggtggg cgcggttctg ctcgtcgttg ccgaacagca tgtcgtagac
     1141 gaggacgccg tggatgccgg cgatggtctg cgtcgtccag aacgggtcga gggtgcgcac
     1201 gtcggcgtgc atcaccgccc gcagcacctt ctcttgcgcc tgcgctgatg cgggcgggac
     1261 gagggcggcc agcgcgaagg ccgcggcggc ggaccagagg cggagggcgt cagaggattt
     1321 cgccggcatc gatgcgtctc ccgaaggccc gtcgttgcga actgcgggca gtccagcgca
     1381 gcctatgtcg ttccgcgccc ggcgcgcaat ccgcccgttt tggtcggcgg tcggcgccgc
     1441 atcggagcgg accaacatct ctgaaccgcc ccgtcccgcc cgtgggagcg gcacaaattc
     1501 aagcgatggt ggcggcattc cgaggaaggc cgtcagctta cgacaagccc cgtcggcaat
     1561 ttccagcgaa cgacaacggc tccggcgggc cgaaccggat cccccgtccc ctttgtgagg
     1621 gagcggcgct gactagtgtg tgcgagactc tggttgaatg atgctctagc cgcgcgccgc
     1681 acacccgctg catagtccct cggccggcgg cgttgcgccc gccccacagg agagacggat
     1741 gggtccgcgc attgcgctcc ttggcttcat gctggaaacg aacgccttcg cgcccgtggc
     1801 cgacgaggcg gagttccggc agaagcactg gctcgaaggc gaggacatcg tgaccgacgc
     1861 ccgctcgccg acgccgcgcg atcccggcgg cctgtcgggc ttctgccgcg ccatggacga
     1921 gagcggagcg tgggagccgg tgccgctcgc catgaccacg gccggcgcga gcgggcccgt
     1981 cgagcagggc ttcttcgacc ggttcgtggc cctgatcgac gagcgtctgc gcgcggcgct
     2041 gcccgtcgac ggcgtctaca tccaggccca cggcgcctgc cgcggcaccg tggacctcga
     2101 tccggagggg acgctgttct ccaccgtgcg cgccagtgtc gggcccaaga tcccggtcgt
     2161 cgcgaccctc gacctccacg ccaacgtgtc ccgcaagatg gtcgaggaga ccgatctcct
     2221 catcgcctat ctcaccaatc cgcacaccga ccacgccgac cgcggccacg aggccgggca
     2281 ggcgatgcgc gagctcctgg ccggcgtgaa gaccgcgaaa gcgtttgtgc gtgtgccgat
     2341 cctgccgccg caggtggccc tcctctccga ccgcggaccc tacggcgagg ccatcgccaa
     2401 gggccagacg cgggtcggcg gcccgatcct gaacgtgtcg gtgctcggaa acttcagctt
     2461 tggcgactac ccgaagaacg gcatgagcgt catcgtgacc gcgcgaggcg accaggacgc
     2521 cgcgaacgcg ctggcgcgcg agctcgcgga cgatctgtgg agcgagcgcc accggttcac
     2581 gccgcgactt ctgtcgatcg aggaggcgac gagccgcatg ctcgaggcga gcgaggaccc
     2641 tggaaagccc gcgctcctct tcgccgactg cgccgacaac cccggcggcg gcgggcgcgg
     2701 caacaccacg gccatcctca ggagcttcct cgacgcgggc gtcaccggcg cggccttcgc
     2761 ggtgcacacc gatccgccgc tcgtggcgga agcgcaccgg cgcggcgtcg gcgcgcgctt
     2821 caccgcgctc ctgaaccggg acgagaccga cccgagctcc gagccgctcg aggcgcaagc
     2881 cgaggtgatg cagctgagcg acggcgagat cgtcggc
//
LOCUS       DASQWN010000498         2696 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1079421, whole genome shotgun sequence.
ACCESSION   DASQWN010000498 DASQWN010000000
VERSION     DASQWN010000498.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2696)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2696)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2696
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1079421"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..763
                     /locus_tag="VE686_09290"
     CDS             <1..763
                     /locus_tag="VE686_09290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007626607.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HYY84677.1"
                     /translation="KRALVLSSSRGLGLGVAQSLAAEGANVMMTARSGDQLKAAAEAI
                     NAKGKGRAHTFVGDLKDEVEAIHKAAMEALGGIDILVANTGGPPARTALTVQPEEWVP
                     YFEAMVVPVIKLMGLVLPGMRERQWGRILTIASTGVQQPIPNIVISNTLRSSLVGWSK
                     TLATDIAGEGITVNVVLPGRIKTDRTTEIDTAAAKAQGKTADEVEAASLATIPAKRYG
                     RVEEFADVVCFLASERASYITGSMIRVDGGAVRTV"
     gene            complement(788..1117)
                     /locus_tag="VE686_09295"
     CDS             complement(788..1117)
                     /locus_tag="VE686_09295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019902964.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY84678.1"
                     /translation="MAYWNTGIAALGIAALTATAALAQTGAGPTAPNMPDPKSVPAEK
                     VAPPLDTNTTGSTGNLSERLEASEGVIKPPPMGNTGSVITPPPSNNPMPVIRPPGTSP
                     ADPIQPK"
     gene            complement(1199..2059)
                     /locus_tag="VE686_09300"
     CDS             complement(1199..2059)
                     /locus_tag="VE686_09300"
                     /EC_number="2.6.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018042153.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="D-amino-acid transaminase"
                     /protein_id="HYY84679.1"
                     /translation="MSRTVFVNGSFVPFEQATIPLMDRGFLFADGIYEVSAVINGRLI
                     DNEPHLARLDRSLKEIRISNPYSAAEWTRLEEEIVARNRLEEGLVYMQVTRGAAEREY
                     VFPKDATPTVVMFTQPKNMIASPLAETGAAVITVPDLRWKRRDIKSIGLLAQVLAKQA
                     AAEAGVSEAWMVEDGLITEGGSSTAFILTHERKVVTRPLSTAVLPGITRLSVMRLAKE
                     NGLTIEERAFSVDEALGAAEAFLTSASSLVMPVVSIDGKPVGDGKPGAMTRRLRRVYL
                     DMAGVTAAAA"
     gene            2217..>2696
                     /locus_tag="VE686_09305"
     CDS             2217..>2696
                     /locus_tag="VE686_09305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009763686.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferritin family protein"
                     /protein_id="HYY84680.1"
                     /translation="MKALSELTEREVLALAIANEEEDSRIYQSFADRLRPDFNASAGM
                     FDEMAEEERGHRNFLYEAYRERFGEHLPPIRREDVRGFLKRRPVWWNVNLDLRKMRAE
                     AELMERQAANFYDQAADQSRDVSVRELFVKLAEIERGHERKAEEIAEAHMTADAEAAE
                     "
BASE COUNT          427 a          914 c          935 g          420 t
ORIGIN      
        1 caagcgcgcc ctcgtcctgt cctcgagccg tgggcttggc ctcggcgtcg cgcagagtct
       61 tgcggccgag ggcgcgaacg tcatgatgac ggcccgcagc ggcgatcagc tgaaagctgc
      121 ggccgaggcc atcaacgcca agggcaaggg ccgcgcccac accttcgtgg gcgacctgaa
      181 agacgaggtc gaagcgatcc acaaggccgc catggaggcg ctcggcggca tcgacatcct
      241 cgtcgcgaac acgggcgggc cccccgcccg cacggcgctg accgtgcagc cggaggagtg
      301 ggtgccctac ttcgaggcca tggtggtgcc ggtgatcaag ctcatgggcc tcgtcctgcc
      361 gggaatgcgg gagcgccaat ggggccgcat cctgaccatc gcctcgacgg gcgtgcagca
      421 gccgatcccc aacatcgtca tctcgaacac gttgcgctca tctctcgtcg ggtggtcgaa
      481 gacgcttgcg accgacatcg ccggcgaggg catcaccgtg aacgtggtgc tgccgggtcg
      541 catcaagacc gaccgcacga ccgagatcga cacggcggcc gccaaggcgc agggcaagac
      601 ggcggacgag gtcgaggccg catcgctcgc gaccattccg gcgaagcgct acggccgcgt
      661 ggaggaattc gccgacgtcg tctgcttcct cgcctccgag cgcgcgagct acatcaccgg
      721 gtcgatgatc cgcgtcgacg gcggcgccgt ccgcacggtc tgagcgggag ggttctcgtc
      781 gcgaggccta cttcggctgg atcgggtctg ccggcgaggt tccgggcggc cggatcaccg
      841 gcatcgggtt gttgctcggc ggcggggtga tcacggaacc cgtgttcccc atcggcggcg
      901 gcttgatcac gccctcgctg gcctcgaggc gctcgctgag gttgcccgtc gagccggtcg
      961 tgttggtgtc gagcggcggc gccaccttct cggccgggac ggacttcggg tccggcatgt
     1021 tcggggcggt cggccctgcg ccggtctggg ccagtgccgc ggtggccgtc agcgcagcaa
     1081 tgccgagagc cgcgatgccg gtgttccaat acgccatggt caggcctcct cttgggagga
     1141 gaaccgccaa gctgagggtg ggttccgggc agagttcccg tccgaaacag cctcgcgatc
     1201 aggccgccgc tgcggtcacg ccggccatgt cgaggtagac ccggcgcagc cgccgcgtca
     1261 tcgcccccgg cttgccgtcg ccgacgggct ttccgtcgat cgagaccacc ggcatgacga
     1321 ggctcgaggc gctcgttagg aacgcctccg ccgccccgag ggcctcgtcg accgagaacg
     1381 cccgctcctc gatggtgagc ccgttctcct tggcaagccg catcactgag agccgcgtga
     1441 tccccggcag cacggccgtc gagagcgggc gcgtcacgac cttccgctcg tgggtcagga
     1501 tgaaggccgt cgaggagccc ccctcggtga tgaggccgtc ctcgaccatc cacgcttcgg
     1561 acacgcccgc ctccgcggcg gcctgcttgg ccagcacctg agcgagaagc ccgatcgatt
     1621 tgatgtcgcg gcgcttccag cgcaggtccg gcaccgtgat cacggcggcg ccggtctctg
     1681 caaggggtga ggcgatcatg ttcttcggct gcgtgaacat gacgacggtc ggcgttgcgt
     1741 ccttcgggaa cacgtactcg cgctccgcgg cgcctcgcgt cacctgcatg tagacgagcc
     1801 cttcctcgag gcggttgcgc gccacgatct cctcctcgag ccgtgtccac tccgcggccg
     1861 agtacgggtt ggagatgcgg atttccttga gcgaccggtc gaggcgggcg agatgcggct
     1921 cgttgtcgat gagccgcccg ttgatcacgg cgctcacctc gtagatcccg tcggcgaaca
     1981 ggaagccgcg gtccatgagc gggatcgtcg cctgctcgaa ggggacgaac gatccgttca
     2041 caaacacggt gcgggacatg cgggggttcc ttgcagttcg ggctggagcg gcccccaagg
     2101 aacacgaccg ggccccggcc tgcaagcgcg tcccgtgcac ggcgcttgcc acgggcagtt
     2161 ccgcggttga aagcacgcgc gctgctgttt agacacgttc taaacaggag caccggatga
     2221 aggcgctgtc agagcttacg gagcgagagg tcctggcctt ggcgatcgcc aacgaggagg
     2281 aggactcccg tatctaccag agcttcgccg accgcctgcg tcccgacttt aacgcctcgg
     2341 ccggaatgtt cgacgagatg gccgaggagg agcgcgggca tcggaacttc ctctacgagg
     2401 cctaccgcga gcgctttggc gagcacctgc cgccgatccg gcgcgaggac gtgcgcggct
     2461 tcctcaagcg ccggccggtg tggtggaacg tcaacctcga cctgcgcaag atgcgcgccg
     2521 aagccgagct catggagcgc caggcagcca atttctacga ccaggccgcc gaccagtccc
     2581 gcgacgtctc ggtccgcgaa ctcttcgtca agctcgccga gatcgagcgc ggtcacgagc
     2641 gcaaggccga ggagatcgcg gaagcgcaca tgacggccga cgccgaagcg gccgag
//
LOCUS       DASQWN010000499         2680 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1178254, whole genome shotgun sequence.
ACCESSION   DASQWN010000499 DASQWN010000000
VERSION     DASQWN010000499.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2680)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2680)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2680
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1178254"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..720
                     /locus_tag="VE686_09310"
     CDS             <1..720
                     /locus_tag="VE686_09310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018263226.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UxaA family hydrolase"
                     /protein_id="HYY84681.1"
                     /translation="LALQCGGSDGYSAITANPALGAASDVLVRHGGISILSETPEIYG
                     AEHLLTRRAVSREVGEKLVARIKWWEEYTARTGNEMNNNPSPGNKAGGLTTILEKSLG
                     AAAKGGQATLREVYEYAELVREKGFVYMDTPGYDPVAATGQVAGGANLICFTTGRGSA
                     FGAKPAPSIKLATNSDIYAKMEDDMDINCGDVLEGVSIEAKGEEIFAKVLAVASGEHT
                     KSEDLGYGDLEFVPWQIGAVM"
     gene            784..1011
                     /locus_tag="VE686_09315"
     CDS             784..1011
                     /locus_tag="VE686_09315"
                     /inference="COORDINATES: protein motif:HMM:NF014643.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0008219 - cell death [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system
                     prevent-host-death family antitoxin"
                     /protein_id="HYY84682.1"
                     /translation="MTAAEANRQFSKILREVRAGETVLVTSHGEPVATIAPTSATRAA
                     RAEAKRRLMEDLRAQPTLDLPRIARDELYDE"
     gene            1011..1457
                     /locus_tag="VE686_09320"
     CDS             1011..1457
                     /locus_tag="VE686_09320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017277590.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PIN domain-containing protein"
                     /protein_id="HYY84683.1"
                     /translation="MLVALDTNILAYALGINDAGRRARAEGLIAALPDANVVIPVQVL
                     GELFRVLTGKAGWARELAHASISKWQAVYALAPSTPATLANALDLAVAHAFPIWDAMI
                     LAAASEAGCRLLLSEDMRDGFAWRGVTITNPLADSRHPLLARALGA"
     gene            complement(1517..1699)
                     /locus_tag="VE686_09325"
     CDS             complement(1517..1699)
                     /locus_tag="VE686_09325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006697472.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY84684.1"
                     /translation="MPSKRELIDTGTDKRYVRRDEKGQFKESDDVGRSLSQDIRRKAK
                     TTVKSGQGDRGDQKKG"
     gene            2004..2516
                     /locus_tag="VE686_09330"
     CDS             2004..2516
                     /locus_tag="VE686_09330"
                     /inference="COORDINATES: protein motif:HMM:NF012774.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thermonuclease family protein"
                     /protein_id="HYY84685.1"
                     /translation="MVIPFQARPRAKRLRRSRSLFAALVAAVVAAVATLLGPTSQAPA
                     VVPANIRVIDGDTVDAVVPPGPGEAGGARQMKRYRLVGFDTPETVQAGCGAELALGER
                     AKERLRELVATGPVRLAVDEGHTDRWGRGLATLTVGGRDVGTTLIREGLAVPYSGKGR
                     RIDWCEKLRG"
BASE COUNT          401 a          938 c          918 g          423 t
ORIGIN      
        1 ctcgccttgc agtgcggcgg ctcggacggc tactcggcga tcacggcgaa cccggcgctc
       61 ggcgccgcct cggacgtgct ggtgcgccac ggcggcatct cgatcctgtc cgagacgccc
      121 gagatctacg gcgccgagca cctcctcacc cgccgcgcgg tgagccgcga ggtcggcgag
      181 aagctggtcg cgcgcatcaa gtggtgggag gaatacaccg cgcgcaccgg caacgagatg
      241 aacaacaacc cctcccccgg caacaaggcg ggcggcctca ccacgatcct cgagaagtcg
      301 ctgggcgccg ccgccaaggg cggccaggcc accttgcgcg aggtctacga atacgccgag
      361 ctcgtgcgcg aaaagggctt cgtctacatg gacacgcccg gctacgaccc cgtggccgcc
      421 accggccagg tcgccggcgg cgcgaacctc atctgcttca cgacgggccg cggctccgcc
      481 ttcggcgcca agccggcgcc gtcgatcaag ctcgccacca actccgacat ctacgccaag
      541 atggaggacg acatggacat caactgcggc gacgtgctgg agggggtgtc gatcgaggcc
      601 aagggcgagg agatattcgc taaggtcctc gccgtggcgt ccggcgagca caccaagtcg
      661 gaggacttag gctacggcga tctcgagttc gtgccgtggc agatcggggc ggtgatgtag
      721 ggcttaggcg cgccggcctt tgcatgctgt agtgattttc actacattcg ctgcatgaag
      781 accgtgactg cggccgaggc aaaccggcaa ttctcgaaga tcctacgcga ggtgcgcgcg
      841 ggcgagacgg tgctcgtcac ctcgcacggc gagcccgtcg cgacgattgc tcccaccagt
      901 gcaacgcgtg ccgcgcgggc cgaggcgaag cgccgcctga tggaagattt acgcgcgcag
      961 cccaccctcg acctgccccg catcgctcgc gacgagcttt atgacgagtg atgctcgtcg
     1021 cgctcgacac gaacatcctt gcctacgcgc tcggtatcaa cgatgcgggc cggcgggccc
     1081 gggcggaagg cctgatcgcg gcgctacccg atgccaatgt agtcatcccc gtccaagtgc
     1141 tgggcgagct gttccgcgtt ctgaccggga aggccggctg ggctcgcgag ctcgcgcacg
     1201 cgtcgatttc gaagtggcaa gccgtttatg ctctggcacc atcgacgccg gccacactcg
     1261 ccaacgcgct ggatctcgct gtcgcgcacg cgttcccgat ctgggacgcc atgatccttg
     1321 ctgccgcctc cgaggccggt tgccgcctgc tgctgtcgga ggacatgcgt gacggtttcg
     1381 cgtggcgtgg cgtgacgatc accaatccgc tggcggatag ccgccatccc ttgctcgccc
     1441 gagcgctggg cgcgtaaggc gcccgagcgt catagtcccg ggggttcgac tttcgaccgc
     1501 cgaccattga agccgcctac cccttcttct ggtcgccccg gtcgccttga cccgacttca
     1561 cagtggtctt cgccttgcgg cggatgtctt ggctcagcga gcggccgacg tcgtcggatt
     1621 ccttgaactg gcccttctcg tcgcggcgga cgtagcgctt gtcggtgccg gtatcgatca
     1681 attcgcgctt gctgggcatc ggtcggtctc caagctgagc tgctgtagaa cgcgtgctgc
     1741 ggatgcgcgt tcctcaaccc gccctccccc tggatcgcgt tgctttgctc gcgcaggcaa
     1801 ctcccccccc gcgaggggag ggcggagacg ggcgcgtcag cgcccgcccg ggtggggcga
     1861 aaccctcggc gctcgaagat ccgactccgg gcttccgccc caccccgctc gcgcctgtag
     1921 gcgagtcgcc ctcccctcgc cgggagggat tccactgacc gcggttacga ttgcgcaacc
     1981 tgcgccgggc caggcttgcg cgcatggtca tccccttcca ggcgcgcccg cgcgcgaagc
     2041 ggctccggcg cagccggtcg ctgttcgcgg ccctcgtcgc ggccgtggtg gcggccgtgg
     2101 cgacgctcct tggtccgaca tcgcaggcgc cggcggtggt gcctgcgaac atccgggtca
     2161 tcgacggcga caccgtcgat gccgtcgtgc cgcccgggcc gggcgaggcc ggaggcgcga
     2221 gacagatgaa gcgctaccgc ctcgtcggct tcgacacgcc ggagacggtc caggctgggt
     2281 gcggcgcaga gctggccctc ggcgagcgcg ccaaggagcg cctgcgggag ctcgtcgcga
     2341 ccgggccggt gcggctcgcc gtggatgagg ggcacacgga ccgctggggc cgcggcctgg
     2401 ccaccctcac cgtcggcggc cgagacgtcg ggacaacgct catccgcgag ggccttgcgg
     2461 tcccctactc gggcaagggc cggcgcatcg actggtgcga gaagctgcgc ggctgatccg
     2521 cgcggctacg ggtgccctcc cgtcagcctc gggcggagcg aagcgcagac ccgaggatct
     2581 cagcggaaga gggaacctac cgggaggtcc tcgggtcgcc gcggtggcgg cgcccgggcg
     2641 cactcgccat gactcaaaag ttaatgtacg ttaaccagcg
//
LOCUS       DASQWN010000500         2629 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_683274, whole genome shotgun sequence.
ACCESSION   DASQWN010000500 DASQWN010000000
VERSION     DASQWN010000500.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2629)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2629)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2629
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_683274"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1176
                     /gene="ligA"
                     /locus_tag="VE686_09335"
     CDS             <1..1176
                     /gene="ligA"
                     /locus_tag="VE686_09335"
                     /EC_number="6.5.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009764028.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003911 - DNA ligase (NAD+) activity
                     [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent DNA ligase LigA"
                     /protein_id="HYY84686.1"
                     /translation="LGFVSRSPRWALAHKFPAEKATTVLERIEIYVGRTGALTPVARL
                     KPVTVGGVVVTSATLHNEDEIARKDVREGDTVNIQRAGDVIPQVLGVVLEKRPPESKP
                     YEFPKTCPACGSHAVREVNPRSGKEDVVRRCTGGLICPAQRVERLKHFVSRNAFDIEG
                     LGAQRIEEFYRDGLIAGPQDIFTLEARDRRSLTKLANREGWGETSAKNLFAAIEARRR
                     IPLNRFIFALGIVHVGETNAKLLARHFGSIEALRDTAIAAADRESEAYAELTSLGGVG
                     EVVADALVEFFKEPHNRDMLEALIAAVTPEPLEQTRSDSPVAGKTVVFTGSLEKMTRD
                     EAKAMAERLGAKVAGTVSKKTDIVVAGPGAGSKLAKAKEFGVEVMDEDAWLALAGRQ"
     gene            1173..1874
                     /locus_tag="VE686_09340"
     CDS             1173..1874
                     /locus_tag="VE686_09340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009764030.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_component: GO:1902495 - transmembrane transporter
                     complex [Evidence IEA];
                     GO_process: GO:0006865 - amino acid transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AzlC family ABC transporter permease"
                     /protein_id="HYY84687.1"
                     /translation="MTDGAISTWREVRDGVRDVAPAMIAAIPIGLLFGALAAAKGMSP
                     LEVALMSGLVFAGGAQFAALELWATPAPIAALAFSALLINARHVLMGASLARKTGRFT
                     TLQRLLGFAVMADENWAFSERRAARQPLTFAYFGGMGAVFWVNWVVLSTLGALAGSFL
                     GDPQQLGADFAFTALFIGLIARFGGGRVTLITIAVSATVAAAVHALAGPPWHVACGAL
                     AGIAVAYLAAPEGKA"
     gene            1871..2170
                     /locus_tag="VE686_09345"
     CDS             1871..2170
                     /locus_tag="VE686_09345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009764031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AzlD domain-containing protein"
                     /protein_id="HYY84688.1"
                     /translation="MSLDATTLAAIVAMAVVTYATRIAGLVFADRLVLKGRAKAAFEA
                     IPPAVLVAVIAPMALATGWRETVAAAITAGAATRLPLLATIAVGVAAIVLLRRFA"
     gene            complement(2142..>2629)
                     /locus_tag="VE686_09350"
     CDS             complement(2142..>2629)
                     /locus_tag="VE686_09350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012456687.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="50S ribosomal protein L11 methyltransferase"
                     /protein_id="HYY84689.1"
                     /translation="LALARELKRRRPRHVLDVGTGTGILAFAAAKALKREVVAGDIDP
                     EAVRVARENAKLNGIAGHLRLYVAPGVRHALANRPGRFDLVFANILARPLMRLAPSIA
                     RVLAPGGTLVLSGLLARDVPGVLSAYAAHGWRLKRRRDIEGWAALTLTRGLRRSGARA
                     R"
BASE COUNT          366 a          943 c          935 g          385 t
ORIGIN      
        1 ctcggcttcg tctcgcgctc gccgcgctgg gcgctggccc acaagttccc ggccgaaaag
       61 gcgacgacgg tgctcgagcg catcgagatc tacgtcggtc gcaccggcgc gctcacgccg
      121 gtggcgcggc tgaagcccgt cacggtcggc ggcgtggtgg tgacgagcgc gacgctgcac
      181 aacgaggacg agatcgcccg caaggatgtg cgcgagggcg acacggtgaa tatccagcgc
      241 gccggcgacg tcatcccgca ggtcctcggc gtcgtgctcg agaagcgacc gcctgagtcg
      301 aagccctacg agtttccgaa gacctgcccg gcctgcggca gccatgcggt gcgcgaggtg
      361 aacccgcgct ccggcaagga ggacgtcgtg cgccgctgca cgggcggcct catctgcccg
      421 gcgcagcggg tcgagcgtct caagcacttc gtgtcgcgca acgcgttcga catcgagggg
      481 cttggggcgc aacgcatcga ggagttctac cgcgacggcc tgatcgccgg gccgcaggac
      541 atcttcaccc tcgaggcgcg cgaccggcgc agcctgacca agctcgccaa ccgcgagggc
      601 tggggcgaga cgagcgccaa gaacctcttc gccgccatcg aggcgcgccg gcgcattccg
      661 ctcaaccgct tcatcttcgc gctcggcatc gtccacgtgg gagagaccaa cgcgaagttg
      721 ctcgcgcggc acttcggttc gatcgaagcc ttgcgtgata cagccatcgc agcggccgat
      781 cgcgagtcgg aggcctacgc cgagctaacc tcgctcggcg gcgttggtga ggtcgtggcc
      841 gatgccctcg tggagttctt caaggagccg cacaaccgcg acatgctcga ggccctcatc
      901 gccgcggtga cgccggagcc gctcgagcag acgcgctccg attcgcccgt ggcggggaag
      961 accgtggtat tcacgggctc gctcgagaag atgacccggg acgaagccaa ggccatggcg
     1021 gagcgcctcg gcgccaaggt ggccggcacg gtgtccaaga agaccgacat cgtcgtcgcc
     1081 ggcccgggcg ccggatcgaa gctcgccaag gccaaggaat tcggcgtcga ggtcatggac
     1141 gaggacgcct ggctggccct cgccgggcgg cagtgacgga cggggcgatc agcacctggc
     1201 gcgaggtgcg ggacggggtg cgcgacgtcg cgcccgccat gatcgcggcg atcccgatcg
     1261 ggcttctctt cggtgccctc gcggccgcga aaggcatgtc gcccctcgag gtcgcgctga
     1321 tgtcgggcct cgtcttcgcc ggcggcgcgc agttcgccgc cctcgagctc tgggcgacgc
     1381 cggcgccgat cgcggcgctc gccttctcgg cgctcctcat caatgcgcgc catgtcctca
     1441 tgggcgcctc gctggcgcgc aagaccggac gcttcaccac cctgcagcgc ctcctcggct
     1501 ttgccgtgat ggccgacgag aactgggctt tctcggaacg ccgcgcggcg cgccagccgc
     1561 tgacctttgc gtactttggc ggcatgggcg cggtgttctg ggtgaactgg gtggtgctga
     1621 gcacgctcgg cgcgctcgcc ggctccttcc tcggcgaccc gcagcagctc ggcgccgatt
     1681 tcgccttcac ggccctgttc atcggcctca tcgcccgctt cggaggcgga cgcgtgaccc
     1741 tcatcaccat cgccgtgagc gccaccgtgg cggcggccgt gcacgcgctc gccggaccgc
     1801 catggcatgt cgcctgcggc gcgctcgccg ggatcgccgt cgcgtacctc gccgcgccgg
     1861 agggcaaggc ttgagcctcg acgcgaccac cctcgccgcc atcgtcgcca tggcggtcgt
     1921 cacctatgcg acgcgcatag cggggctcgt gttcgccgat cggctcgtgc tcaaggggcg
     1981 cgccaaggcg gccttcgagg caatcccgcc cgccgtgctc gtcgctgtca tcgcgcccat
     2041 ggcgcttgcg acgggctggc gtgagaccgt ggcggccgcg atcaccgctg gcgcggcaac
     2101 gcggctgccg ctgcttgcca ccatcgccgt cggcgtcgcc gctatcgtgc tcttgcgccg
     2161 cttcgcctga ggccgcgcgt cagcgtcagc gccgcccagc cctcgatgtc gcgccggcgc
     2221 ttcagacgcc agccgtgggc cgcgtaggcg gagagcacgc ccggaacgtc gcgtgccagc
     2281 agcccggaca ggaccagcgt gccccccggc gcgagcacgc gcgcgatgga gggcgcaagg
     2341 cgcatgagcg gccgggccag gatgttggcg aacacgaggt cgaagcgtcc gggccgattc
     2401 gcgagggcat ggcggacccc gggagcgaca tagagccgga ggtgcccggc gatgccgttg
     2461 agcttggcgt tctcgcgggc gacgcgcacc gcttcgggat cgatgtcgcc ggcgaccacc
     2521 tcgcgcttca gcgccttcgc ggccgcgaag gcgaggatgc cggtgccggt gccgacgtcg
     2581 agcacgtgcc gcggccggcg ccgcttcagc tcccgcgcca gcgccagaa
//
LOCUS       DASQWN010000501         5616 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_340395, whole genome shotgun sequence.
ACCESSION   DASQWN010000501 DASQWN010000000
VERSION     DASQWN010000501.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 5616)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5616)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5616
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_340395"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..388
                     /gene="apaG"
                     /locus_tag="VE686_09355"
     CDS             <1..388
                     /gene="apaG"
                     /locus_tag="VE686_09355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012336173.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="Co2+/Mg2+ efflux protein ApaG"
                     /protein_id="HYY84690.1"
                     /translation="RAVTRGVRVTVTPRFVEEESSPDAGRYFFAYMVEIANMSIERVQ
                     LRSRYWRIVDGRGELQEVRGAGVVGEEPVLAPGESFTYTSGCPLTTPDGTMEGSYLIE
                     TAGGETFDAAIPAFALESPHLKRVMH"
     gene            397..1571
                     /gene="argE"
                     /locus_tag="VE686_09360"
                     /pseudo
     CDS             397..1571
                     /gene="argE"
                     /locus_tag="VE686_09360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015933747.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0008777 - acetylornithine deacetylase
                     activity [Evidence IEA];
                     GO_process: GO:0006592 - ornithine biosynthetic process
                     [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="acetylornithine deacetylase"
     gene            complement(1579..2559)
                     /locus_tag="VE686_09365"
     CDS             complement(1579..2559)
                     /locus_tag="VE686_09365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009763527.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051082 - unfolded protein binding
                     [Evidence IEA];
                     GO_process: GO:0006457 - protein folding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Hsp33 family molecular chaperone"
                     /protein_id="HYY84691.1"
                     /translation="MTVADFEGVDDLVLPFSVEPLDVRGRVVRLGAAVDTILARHGYP
                     DAVARLIGEAAALTVLLGTSLKFEGRFQLQTKSDGPVDMVVVDFDAPDRLRACARFDA
                     ERLAALAGASVKSGDLLGHGHLAMTIEAGPELSRYQGVVPLEGQPLEEAAHQYFRQSE
                     QIPTRVRLAVAQQFEAGRSAYRAGGMLVQFLPSSPERMRQADLPPGDAPEGHVGAEHA
                     EDDAWVEARALVDTVEDHELVDPNVSSERLLYRLFHERGVRVFEGQPVHEECRCSHAR
                     IMTMMTRFSADDRAHMVEGGRIRITCEFCSRAYDLDPAEVEAEIATSAER"
     gene            complement(2556..3512)
                     /gene="argF"
                     /locus_tag="VE686_09370"
     CDS             complement(2556..3512)
                     /gene="argF"
                     /locus_tag="VE686_09370"
                     /EC_number="2.1.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012336168.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004585 - ornithine carbamoyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0042450 - arginine biosynthetic process via
                     ornithine [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ornithine carbamoyltransferase"
                     /protein_id="HYY84692.1"
                     /translation="MSVGAGPAAGDGVRHFLDLTDFSGEELRRVLDASAAIKARRRKG
                     ELAAERPLTGKVLGMVFDKPSTRTRVSFDVGMRELGGETIMLTGAEMQLGRGETIADT
                     ARVLSRYVDAIMIRILDHDMMLELARHATVPVINGLTKLSHPCQIMADVLTFEEHRGP
                     IAGRTVAWSGDANNVLASWVHAAPRLGFSLRIASPPELSPRPELLAFAKGEGANVTVT
                     TDPYEAAAGADAVVTDCWVSMGDEEEGRRHNLLMPYQVTAKVMAAAQDNAIFMHCLPA
                     HRGEEVSEEVIDGPQSVVFDEAENRLHAQKGILAWCLGAVAA"
     gene            complement(3509..4741)
                     /locus_tag="VE686_09375"
     CDS             complement(3509..4741)
                     /locus_tag="VE686_09375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020187036.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate aminotransferase family protein"
                     /protein_id="HYY84693.1"
                     /translation="MTATSALLPTYARADLAFERGEGVWLETREGERYLDFGAGIAVN
                     VLGHAHPHLVAALTAQANKVWHTSNLVRMPEGERLAQRLVDNTFADFVFFGNSGAEAN
                     EAAIKIARKHHAANGQPERYRIVSFEGAFHGRTLATLAAGGQQKYIEGFGPKVEGFDQ
                     VPPEDLEALKKAIGPETAALMVEPVQGEGGVRPLSPGFLRALRALCDEHGLMLIFDEI
                     QTGVGRTGKLFAYEWSGITPDIMSVAKGIGGGFPMGACLATAEAAKGMTAGTHGSTFG
                     GNPLAMAVGNAVLDVVLEPGFLERVERMGLVFKQRLAELKDRHPAVIAEIRGSGLLLG
                     LRTIVPNTDVVAAARDEKLFILTAGDNVVRLAPPLTVTEGDVAEAIERLDRACTAVER
                     DLAAGAAKTGAAKAGAAG"
     gene            complement(5297..>5616)
                     /locus_tag="VE686_09380"
     CDS             complement(5297..>5616)
                     /locus_tag="VE686_09380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012029768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HYY84694.1"
                     /translation="HCARVDGAFKPIPGTDFELKADLVLLAMGFVSPVQEGLLSELGV
                     EFDPRGNVKADTRAYRTSLDKVFSAGDMRRGQSLIVWAIREGRQAARAIDEYLTGSTV
                     LPS"
BASE COUNT          800 a         1991 c         1999 g          826 t
ORIGIN      
        1 cagggccgtc acccgaggag tccgcgtgac cgtcacgcct cggttcgtcg aggaggagtc
       61 ctcccccgac gccggacgct actttttcgc ctacatggtc gagatcgcca acatgagcat
      121 cgagcgcgtg cagctgcggt cgcgctactg gcgtatcgtg gacggccgcg gcgagctgca
      181 ggaggtccgc ggcgccgggg ttgtcggcga ggagccggtg ctggcgccgg gcgagagctt
      241 cacctacacg agcggctgcc cgctcactac ccccgacggg accatggagg gcagctacct
      301 catcgagacg gcgggcggcg agacattcga cgccgcgatc ccggctttcg cgctcgagag
      361 cccgcacctt aagcgcgtga tgcattgagg gcggcgatgg ttgagcgcgg cacgaggctc
      421 accccgctcg agatgctgga gcgcctggtg tcattcgaca ctgagagcga caaatccaac
      481 ctcccgctcg tcggcttcgt cgaggagtat ctgcggagct ggggcgtgcc gttcctacgg
      541 gtcgcgaacg aaaccggcga caaggccgcg ctcttcgcga ccgtgggccc cgcggagcgc
      601 ggcggtgtcg tcctgtccgg gcacaccgac gtggttccgg tcgcggggca gacttggatg
      661 agcgatccgt tccgcctgcg gattgccgac ggacgcgcct acggccgcgg cgcagtcgac
      721 atgaaggctt tcgatgcgct cgcgctggcg ctcgtcccgg agttcctccg attggacctg
      781 aagacgccga tccacatcct cctgtcctat gacgaggaga cgacctgccg tggctccgtg
      841 gacgtcatcg ccgcttcggc gcggatctgc cgacgccggt ctccgtcatc gtcggcgagc
      901 cgactgacct cgaggtcgcg gacgcgcaca agagcgtcgt caccttcaac accgtcgtgc
      961 acgggcacga ggcgcactcg tcgaagccgg cgctcggcgc caacgccgtc atggcggcgg
     1021 ccgaactcgt gtccgagttg aaccggatcg ccgacgacat gatggcccgc ggcgacccga
     1081 cggggcgctt cgacccgccc tacacgaccg tgcacgtcgg caccattgcc ggcggtagtg
     1141 cgcgcaacat cctgccgaag tcgtgcacct ttcattggga gttccgcggc gtcccagggc
     1201 tcgatccgac cgaaatcccg cgtcgcctgg acgccttcgc ggccgaggtc gcgcgcaccc
     1261 ggctcaaccg gttcgggtcc tacggccgca tcgaaaccct gcccgaggcc tcggtccccg
     1321 gcctcgcgcc tgacccaggg tcgatcgccg agcgcttggg gctgaggctc gccgggcgca
     1381 accacaccgt cagcatgccc ttcgcgaccg aggccggcgt gttccaggaa gccggcatcc
     1441 ccacaatcgt ctgcggcccc ggctcgatcg accaggccca ccagcccgac gaatacatca
     1501 ccctcgacgc gctcgcggcc ggcgaagcct ggctgcgccg gctgggcgcg ctctgcgcgg
     1561 cggggctctg aggccccctt accgctccgc gctcgtcgcg atctccgcct ctacctcggc
     1621 aggatcgagg tcgtaggcgc gtgagcagaa ctcgcaagtg atgcggatgc ggccgccctc
     1681 gaccatgtgg gcgcggtcgt cggcgctgaa ccgggtcatc atcgtcatga tgcgggcgtg
     1741 cgagcagcgg cattcctcgt gcacgggctg gccctcgaag acgcgcaccc cgcgctcgtg
     1801 gaagaggcgg tagagcaggc gctcgctcga gacgttgggg tcgacgagct cgtggtcctc
     1861 gaccgtgtcg acgagggcgc gggcctcgac ccaggcgtcg tcctcggcgt gctccgcccc
     1921 gacgtggccc tccggcgcgt cgccgggggg caggtcggcc tggcgcatgc gctccggcga
     1981 cgagggcagg aactgcacca gcatcccgcc ggcccggtag gcgctacgcc cggcctcgaa
     2041 ctgctgcgcc accgcaaggc gcacccgcgt cgggatctgc tccgactggc ggaagtactg
     2101 gtgcgccgcc tcctccagcg gctggccctc gagcggcacc acgccctggt agcggctgag
     2161 ctccggcccg gcctcgatgg tcatggcgag gtgcccgtga ccgaggagat cgccgctctt
     2221 gacgcttgcg ccggcgagcg ccgcgagccg ctccgcgtcg aagcgcgcgc aggcccgcag
     2281 gcggtcgggc gcgtcgaagt ccaccaccac catgtcgacc ggcccgtcgg acttcgtctg
     2341 cagctggaac cggccctcga acttcagcga ggtgccgagc agcaccgtca gcgccgccgc
     2401 ctcgccgatc aggcgcgcga cggcgtcggg atagccgtgc cgggccagga tggtgtcgac
     2461 cgccgcgccg agccgcacga cgcggccgcg gacgtcgagc ggctcgaccg agaacggcag
     2521 cacgaggtcg tcaacgccct cgaaatccgc caccgtcatg cggccacggc ccccaggcac
     2581 caggcgagga tgcccttctg cgcgtgcagc cggttctcgg cctcgtcgaa caccacggac
     2641 tgcggcccgt cgatgacctc ctcgctcacc tcctcgccgc ggtgggcggg caggcagtgc
     2701 atgaagatgg cgttgtcctg agccgcggcc atcaccttgg cagtgacctg gtagggcatc
     2761 agcaggttgt gccggcggcc ctcctcctcg tcgcccatgg agacccagca gtccgtcacc
     2821 acggcgtcgg cgccggcggc ggcctcgtag gggtcggtgg tgacggtcac gttcgcgccc
     2881 tcgcccttgg cgaaagccaa aagctcaggg cgggggctca gttccggcgg gctcgcgatc
     2941 cgcaacgaga acccgagccg aggcgcagca tgcacccaag aggcgagcac gttgttggcg
     3001 tcgcccgacc acgcgacggt gcggcccgcg atcggcccgc ggtgctcctc gaaggtcaag
     3061 acgtcggcca tgatctggca tggatgcgac agcttggtga gcccgttgat caccggcacg
     3121 gtggcgtggc gggcgagctc gagcatcatg tcgtggtcga ggatgcggat catgatggcg
     3181 tcgacgtagc gcgacagcac gcgggcggtg tcggcgatgg tctcgccgcg gccgagctgc
     3241 atctcggcgc cggtgagcat gatggtctcg ccgccgagct cgcgcatgcc gacgtcgaac
     3301 gacacccgcg tccgcgtcga gggcttgtcg aagaccatgc cgagcacctt gccggtgagc
     3361 ggccgctcgg ccgcgagctc gcctttgcgc cggcgcgcct tgatggcggc gctcgcgtcg
     3421 aggacccggc gcagctcctc gcccgagaag tccgtgaggt cgaggaagtg gcgcacgccg
     3481 tcgccggccg caggacccgc tccgacgctc atccggcggc tccggccttc gcggctccgg
     3541 tcttggccgc cccggccgcg aggtcccgct cgaccgccgt gcaggcccgg tcgaggcgct
     3601 cgatcgcctc ggcgacgtcg ccctcggtga cggtgagcgg cggggcgagc cgcacgacgt
     3661 tgtcgccggc ggtgaggatg aacagcttct cgtcccgcgc cgccgccacc acgtcggtgt
     3721 tgggcacgat ggtgcgcagg ccgagcagca ggcccgagcc gcggatctcg gcgatgacgg
     3781 ccgggtggcg gtccttcagc tcggcgaggc gctgcttgaa gacgaggccc atgcgctcga
     3841 cgcgctcgag gaagccgggc tccagcacca cgtcgaggac ggcgttgccg accgccatgg
     3901 cgagcggatt gccgccgaag gtcgagccgt gcgtgccggc cgtcatcccc ttggccgcct
     3961 cggcggtggc gaggcaggcg cccatgggga agccgccgcc gatgcctttt gcaaccgaca
     4021 tgatatccgg cgtgatcccg ctccactcgt aggcgaagag cttgccggtg cgcccgaccc
     4081 cggtctggat ctcgtcgaag atcagcatga ggccgtgctc gtcgcacaga gcccgcaggg
     4141 cccgcaggaa gcccggcgag agggggcgca cgccgccctc cccctgaacc ggctcgacca
     4201 tgagggccgc cgtctcaggg ccgatcgcct tcttcagcgc ctcgaggtcc tcgggcggga
     4261 cctggtcgaa gccctcgacc ttcggcccga agccctcgat gtacttctgc tgccctcccg
     4321 ccgctagcgt cgcgagggtg cggccgtgga aggcgccctc gaagctgacg atgcggtagc
     4381 gctccggctg gccgttggcg gcgtggtgct tgcgggcgat cttgatcgcc gcctcgttgg
     4441 cctcggcgcc ggaattgccg aaaaagacga agtccgcgaa cgtgttgtcg acgaggcgct
     4501 gggccaggcg ctcgccctcg ggcatgcgca cgaggttcga ggtgtgccag accttgttgg
     4561 cctgcgcggt gagcgccgcg acgaggtgcg ggtgggcgtg gccgagcacg ttgacggcga
     4621 tgccggcgcc gaagtcgagg tagcgctcgc cctctcgcgt ctcgagccac accccctcgc
     4681 cgcgctcgaa ggcgaggtcg gcccgggcat aggtcggcaa aagcgctgag gtcgcggtca
     4741 cggcggcatc tcccgagcgg gccggcttgt cgtcgaggcc cttggcgtga gccgggcccg
     4801 tgcggggccc gaaaacaaaa cgccgcccca cagagggcgg ccgcacggct ttatgtgccg
     4861 cgccgggccc gaaaattcaa ggaaattcgc cgcgcatcat catcatcgcc agagggagcg
     4921 gcttttcgct aaactgcgca ttatcatcat cgtcgcgcgg cgcagccgat cgattgcccg
     4981 tgaccggcgc tgcggctgcc ctcacccggt cggcgctggc gcgccgactc gacctctccc
     5041 gctgcgcggg cgaggcgagg agcgcgtccc ctctcccgcg cgcgggagag gtcgagtccg
     5101 cgaagcggac cgggtgaggg gcgaactcgc gcgtcgcaca tccctccccg cgaggggagg
     5161 gcggagacgg gcgcgtcagc gcccgcccgg gtggggcgaa tacctcggcg tttcgacgat
     5221 aggctccggg cttccgcccc accccgctcg cgcctgcagg cgcgagtcgc cctcccctcg
     5281 cggggaggga tgaggatcag ctcggcagga cggtggagcc cgtgaggtat tcgtcgatgg
     5341 cgcgggcggc ctggcggccc tcgcggatgg cccagacgat gagggattgg ccgcggcgca
     5401 tgtcgccggc cgagaatacc ttgtcgagtg acgtgcggta ggcgcgcgtg tcggccttga
     5461 cgttgccgcg cgggtcgaac tccaccccga gctcggacaa aagcccttcc tgcacggggc
     5521 tcacgaagcc catggccagg agcacaaggt cggccttcag ctcgaaatcg gtgccgggga
     5581 tcggcttgaa ggcgccgtcg acgcgcgcgc aatgca
//
LOCUS       DASQWN010000502         3311 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1279192, whole genome shotgun sequence.
ACCESSION   DASQWN010000502 DASQWN010000000
VERSION     DASQWN010000502.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 3311)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3311)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3311
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1279192"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(62..967)
                     /locus_tag="VE686_09385"
     CDS             complement(62..967)
                     /locus_tag="VE686_09385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009763384.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HYY84695.1"
                     /translation="MASSSLPARLDVGFGPAFAALCAGAAAMGVSPLFVRFAAADMGP
                     FASAFWRVFLALPVLYAWMRLEEARAPAQTRRFSRATVLAGLAFAGDLFFWHLSILNT
                     TVANATFFACSAPIFVILLAWLVQGKRIAGATVAGLALCLAGGASLIGQSLQLAPERF
                     LGDVYGVATALFFGIYFIAVERAREGKGPGRVSFELTVVTTAALFVVALALEPSLMPQ
                     TWSGIAALFAMAWISHAGGQGLLSVALGRLPAVFSSLVIFLEAVVGAGMGWLVLNEAL
                     TPIQFAGGALILLGIFVARPRSEPA"
     gene            complement(975..1967)
                     /locus_tag="VE686_09390"
     CDS             complement(975..1967)
                     /locus_tag="VE686_09390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009494000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HYY84696.1"
                     /translation="MSSAARVAVAMLVALSVAGCVGDGVLTGSLGSTSAATRDGEGRA
                     ILVATTRAAAENGARPWFGNKRGRGLTFAEARLDGPDTSFTGRIASVVTSDWSVSRVE
                     KVQRENAPSAFAAAALGRDVLLYVHGYRESFETAAASAAQLATGIGFRGAAGLFSWPS
                     GGGTLDYGYDRESALWSRDGLEDLLTALTQSPSGGRIHIVAHSMGSLLTLEAIRMLRA
                     SGGEAAMARLGAVVLASPDVDIDFFTRSVERLGPDARKITVISSTNDRALELSRRIAG
                     GIVRAGAADRGKLEALGVRVADASDYGGGLYVNHDLFLTSPDVQQVVKRAMERQ"
     gene            2048..2875
                     /locus_tag="VE686_09395"
     CDS             2048..2875
                     /locus_tag="VE686_09395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012456133.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3750 domain-containing protein"
                     /protein_id="HYY84697.1"
                     /translation="MAATRPTVLRHPCALLILERAPKFKGMLLALRIILVILVLFILP
                     LAAHAAWWAMRDDVARDWGSADWSSAKLLPPAAQKAEAVVAIYAGRTGRWRGIFAHHS
                     WIVVKEKGATRYTRYDKVGWGSPVRTDGWAPDGRWFGNPPEPVLIVEGAAAERLIPRI
                     RKAVASYPYRAWGDYAAWPGPNSNTFVAWVLEQVPDLRTALLPTAIGKDWHPTTEFFG
                     LTPSRTGIRLSIGGYAGLAVGWVEGLELNFLGLVAGVDVRRPALKLPGWGRLGVAPA"
     gene            2959..>3311
                     /locus_tag="VE686_09400"
     CDS             2959..>3311
                     /locus_tag="VE686_09400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004110640.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbfB/YjiJ family MFS transporter"
                     /protein_id="HYY84698.1"
                     /translation="MRPGSAEATTDSFLRPALAGAAATFSGIGLARFAYVPLFPAMVG
                     AGWISGAEGGFLGAVNLSGYLAGVLGGRRLAMRVGTAAALDLSLALAALSFAAGAWNG
                     GLAWLALWRAGAGVAG"
BASE COUNT          490 a         1197 c         1199 g          425 t
ORIGIN      
        1 gcggcggcga cggcggcgtc gaaggcgcgc aggagcgtcg cccggcgctg cgcgaccggg
       61 ctcatgccgg ctcgctccgc gggcgcgcga caaagatgcc gaggaggatg agcgcgccgc
      121 cggcgaactg gatcggcgtc agcgcctcgt tgaggacgag ccagcccatg ccggccccga
      181 ccaccgcctc gaggaagatc acgagggacg agaacaccgc cggcaggcgt ccgagcgcga
      241 cggagagcag tccctgcccg cccgcgtggc tgatccacgc catggcaaag agcgccgcga
      301 tgccgctcca ggtctgcggc atgaggctcg gctcgagcgc gagggccacc acgaacagcg
      361 ccgccgtggt gacgaccgtc agctcgaagc tgacccggcc cggccccttg ccctcacgcg
      421 cgcgctcgac cgcgatgaag taaattccga agaacaaggc cgtggcgacg ccatagacgt
      481 ccccgaggaa gcgctcgggc gcgagctgga ggctctggcc gatgagcgac gcgccgccag
      541 cgaggcacag ggccagcccc gccacggtgg cgccggcgat gcgcttgccc tgcaccagcc
      601 acgccaggag gatgacgaag atcggcgccg agcaggcgaa gaaggtcgcg ttggcgaccg
      661 tcgtgttcag gatcgagagg tgccagaaga acaaatcccc cgcgaaggcg aggccggcga
      721 gcaccgtcgc gcgggagaaa cggcgcgtct gggcgggcgc ccgcgcctcc tcgaggcgca
      781 tccaggcata gagcaccggc aaggccagga acacgcgcca gaaggcgctc gcgaagggcc
      841 ccatgtcggc cgccgcgaaa cgcacgaaca gcggcgacac ccccatggcc gccgccccgg
      901 cacacaaggc cgcgaaggcc gggccgaagc cgacgtcgag ccgtgcggga agggagctcg
      961 aggccattgc gccgctactg ccgctccatg gcgcgcttca cgacctgctg gacgtcgggg
     1021 ctcgtgagga agaggtcgtg gttgacgtag agcccgccgc cgtagtcgga ggcatcggcg
     1081 acccgcaccc caagggcctc gagcttgccg cgatcggccg cacccgcccg cacgatgccg
     1141 ccggcgatgc gccgcgacag ctcgagggcc cggtcgttcg tggacgagat caccgtgatc
     1201 ttgcgcgcat cggggccgag gcgctcgacc gagcgggtga agaaatcgat gtcgacgtcc
     1261 ggcgaggcga ggacgacggc gccgagacgc gccatggcgg cctcgcctcc cgaggcccgc
     1321 agcatgcgga tagcctcgag ggtcaggagc gagcccatgc tgtgggcgac gatgtggatg
     1381 cgcccgccgc tgggcgattg cgtaagcgcg gtcaggagat cctcgaggcc gtcgcgcgac
     1441 cacagcgcgc tctcgcggtc gtagccgtag tctagtgtgc cgccgcccga cggccaggag
     1501 aacagcccgg cggcgccgcg gaagccgatg cccgtcgcga gttgtgccgc cgacgccgcc
     1561 gcggtctcga agctctcgcg atagccgtgc acatagagga gcacgtcgcg cccgagcgcc
     1621 gcggccgcga aggccgatgg ggcgttctcg cgctgcacct tctcaacgcg cgagacgctc
     1681 caatcgctgg tgaccaccga ggcgatgcgc cccgtgaacg acgtgtcggg accgtcgagc
     1741 cgcgcctccg cgaaggtcag gccgcggccg cgcttgttgc cgaaccaggg ccgggccccg
     1801 ttctcggcag cagcccgggt cgtcgccacg aggatcgccc tcccctcgcc gtcccgcgtc
     1861 gctgcgctcg tcgagccgag gctgccggtg aggacgccgt caccgacgca tcccgcgacc
     1921 gagagggcga cgagcatcgc gaccgcgacc cgcgcggcgg aggacatgat caatgaggcg
     1981 ggagagcgca tcttccgggc ggtcgggatc aacatgggtt gcaggccgat gctcctgatg
     2041 cgcgatcatg gcggcgacaa ggccgacggt cctgcgacac ccctgcgcat tgttgatcct
     2101 cgaacgcgcg cccaagttca aggggatgct cctcgccttg cgtattatcc tggtcattct
     2161 cgtgctgttc atcctccccc tcgccgccca cgcggcctgg tgggcgatgc gggacgacgt
     2221 cgcgcgcgac tggggcagcg ccgactggtc gagcgccaag ctgctcccgc ccgcggcgca
     2281 gaaggccgag gccgtcgtgg cgatctacgc cgggcgcacg ggacgttggc ggggcatctt
     2341 cgcccaccac tcctggatcg tcgtgaagga gaagggcgcg acccgctaca cccgttatga
     2401 caaggtcggc tggggctcgc ccgtgcgcac ggacggctgg gcgccggacg ggcgctggtt
     2461 cggcaatccg ccggagccgg tgctcatcgt cgagggcgcc gccgccgagc gtctcatccc
     2521 gcgcatccgc aaggcggtgg cgagctatcc ctaccgcgcc tggggcgact acgccgcctg
     2581 gccgggcccg aactcgaaca ccttcgtcgc ctgggtcctg gagcaggtgc cggacctgcg
     2641 caccgccctc ctcccgaccg ccatcggcaa ggattggcac ccgacgaccg aattcttcgg
     2701 cctgaccccg agccgcaccg gcatccgact gtcgatcggc ggctacgctg gcctcgccgt
     2761 cggctgggtc gagggcctcg agctcaactt cctcggcctc gtcgccggcg tcgacgtccg
     2821 ccgcccggcc ctcaagctcc ccggctgggg ccggctcggc gtcgcgccgg cgtaaccggc
     2881 gacccttgcg gtcacgcgaa ggccgccatc gcggatcgga attggacagg gcgccgcgtc
     2941 gccgcgatgg tgcggcgcat gcggccaggc tctgccgaag cgaccaccga ctcgttcctg
     3001 cgcccggccc tcgccggcgc cgcggcgacg ttctcgggca tcgggcttgc ccgtttcgcc
     3061 tacgtgccgc tcttccccgc catggtgggg gcgggctgga tcagcggcgc cgagggcggg
     3121 ttcctcgggg ccgtcaacct ctccggctac ctcgcgggcg tgctcggggg acgacggctc
     3181 gcaatgcggg tcggtactgc cgccgccctc gatctcagcc tcgcgctggc cgcgctgtcg
     3241 ttcgcggcgg gcgcctggaa cggcgggctt gcgtggctcg ccttgtggcg cgccggggca
     3301 ggcgtcgcgg g
//
LOCUS       DASQWN010000503         4352 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_439450, whole genome shotgun sequence.
ACCESSION   DASQWN010000503 DASQWN010000000
VERSION     DASQWN010000503.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 4352)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4352)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4352
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_439450"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..663)
                     /locus_tag="VE686_09405"
     CDS             complement(<1..663)
                     /locus_tag="VE686_09405"
                     /EC_number="2.3.1.180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011158292.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004315 - 3-oxoacyl-[acyl-carrier-protein]
                     synthase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl-ACP synthase 3"
                     /protein_id="HYY84699.1"
                     /translation="MTRLRSVVRGCGSYLPERILSNKDLERMFETSDEWIVQRTGIKE
                     RHIAADGETTSMLAIKACQAALADAGMQASEIDLIVCGTSTPDYTFPSTASLVQHGLG
                     ITEGAAFDIQAVCTGFVYAVSTADKFLLSGSHKRALVIGAETFSRIIDWEDRTTAVLF
                     GDGAGAIVLEAQESEGTGDDRGVLTSHLRSDGRYREKLYVDGGPGSTKTTGYLRMEGR
                     EVF"
     gene            complement(676..1710)
                     /gene="plsX"
                     /locus_tag="VE686_09410"
     CDS             complement(676..1710)
                     /gene="plsX"
                     /locus_tag="VE686_09410"
                     /EC_number="2.3.1.274"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015933379.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043811 - phosphate:acyl-[acyl carrier
                     protein] acyltransferase activity [Evidence IEA];
                     GO_process: GO:0008610 - lipid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate acyltransferase PlsX"
                     /protein_id="HYY84700.1"
                     /translation="MPEPVRISLDAMGGDHGPSVVVPGAALALERHPGTRFLLFGDRA
                     QIEPLLDRHPALKAAAEVRHTDVAVRMDDKPSQALRSGRRTSSMWLAIQAVRDGEADA
                     AVSAGNTGALMAMSKICLKTMAHIERPAIAGMWPTLRGESIVLDIGATIGADAIHLVD
                     LAIMGAAMARIVLGVERPTVGLLNVGTEEIKGVEMVKEAGRILRETNLPQFAYHGFVE
                     GDDIGKGTVDVVVTEGFTGNIALKTAEGTAKQIGEYLRAAMSRTWTAKIGYLLAKQAF
                     DALREKMDPRRVNGGVFLGLGGIVIKSHGGTDALGFASAIDIGYDMAHYELMRTIREM
                     LEQTPALASA"
     gene            complement(1798..2343)
                     /locus_tag="VE686_09415"
     CDS             complement(1798..2343)
                     /locus_tag="VE686_09415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009491110.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF177 domain-containing protein"
                     /protein_id="HYY84701.1"
                     /translation="MRRDSRTRDSVTPESVGPLSRPVAVDNLPARGIEATVEATAEEC
                     AALAADFKLAAIRSLIGRYKLTGTPERVRVTGRITAAVTQVCVVTLDEFDSNLDEEVE
                     VDFSAPDSLPLTTGESEREYEPPDEIVNGHIDLGSITAEFLALGLDPYPRKPGVDFEY
                     EVRDDRSEGPFAALGKLKGGE"
     gene            complement(2340..2897)
                     /locus_tag="VE686_09420"
     CDS             complement(2340..2897)
                     /locus_tag="VE686_09420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012453919.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ubiquinol-cytochrome C chaperone family protein"
                     /protein_id="HYY84702.1"
                     /translation="MVFGLFRKDPRRPVIAALHQRIVAAARHPDLYGSLRVPDTLEGR
                     FEVLTLHVVLVLEALRRLDAPADEVGQELVDEVFRQLEASLREMGVGDVVVPKRMKAL
                     AQAFYGRARAYDAALASGDETALAAALARNVYAGATPGDALARYVLSARRGLVGMTLE
                     AMLREGPRFPAPHDEPGAAVPEVSS"
     gene            3002..3451
                     /locus_tag="VE686_09425"
     CDS             3002..3451
                     /locus_tag="VE686_09425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010686288.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein assembly factor BamE"
                     /protein_id="HYY84703.1"
                     /translation="MTRRTTTTLARLAAVAAIGVLAAACNIGENFQHGYIVDEQAVAR
                     IRPGMSADQVLQTLGTPSTVSTVGNKSWYYISQGTRRRVQFLNPSTTDQRVTAVYFNQ
                     GLRVERVALYGLEDGKVFDFITRTTPAGGGDQNFVSQLFRGLGRWPV"
     gene            complement(3483..>4352)
                     /locus_tag="VE686_09430"
     CDS             complement(3483..>4352)
                     /locus_tag="VE686_09430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012455007.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RecN"
                     /protein_id="HYY84704.1"
                     /translation="ALDGALVALDEARTALEAAVRASEHDPDELERAEERLFALRAAA
                     RKYNSPADELSAVRARFEAQLAAIDAGEERLSALERAVAQADESYVATAATLSKGRRR
                     AAKALDKAVQAELPPLRLERARFITEIATDESSRDAAGFDRIEFFAQTNPGTKPGPLM
                     KVASGGELSRFMLALKVVLADKGSAPTLVFDEIDTGVGGAVADAIGQRLARLAERVQV
                     VAVTHAPQVAARAARHFLIAKEPVAKSARVATRVAPLAPAPRQEEIARMLAGATVTDE
                     ARAAAARLLQAAG"
BASE COUNT          643 a         1506 c         1527 g          676 t
ORIGIN      
        1 gaagacctcg cggccctcca tgcgcaggta gccggtcgtc ttggtcgagc ccgggccgcc
       61 gtcgacgtag agcttctcgc ggtagcgccc gtcggagcgc aaatgggagg tgagcacgcc
      121 gcggtcgtcg ccggtgcctt cagactcctg cgcctcgagc acgatcgcgc cggcgccgtc
      181 gccgaacagc accgccgtgg tgcggtcctc ccagtcgatg atgcgcgaga aggtctcggc
      241 cccgatgacc agcgcgcgct tgtgcgagcc cgagaggagg aacttgtccg cggtcgagac
      301 ggcgtagacg aagccggtgc agaccgcctg gatgtcgaac gcggcccctt ccgtgatgcc
      361 gagcccgtgc tggaccagcg aggcagtcga cggaaaggtg tagtcgggcg tcgaggtgcc
      421 gcagacgatg aggtcgatct cggaagcctg catgccggcg tcggcgaggg ccgcctggca
      481 cgccttgatg gcgagcatcg aggtggtttc gccgtccgcg gcgatatggc gttccttgat
      541 gcccgtgcgc tggacgatcc actcgtccga ggtctcgaac atccgctcga ggtctttgtt
      601 ggaaaggatg cgttcgggca gatacgagcc gcagccgcga acgacggaac gaagacgcgt
      661 caaagacctg atcccttacg ccgacgcgag cgccggggtt tgctcgagca tctcccggat
      721 cgtgcgcatg agctcgtagt gcgccatgtc gtagccgata tcgatcgcgc ttgcgaaccc
      781 gagcgcgtcg gtaccgccat ggctcttgat gacgatgccg ccaaggccca ggaagacgcc
      841 cccgttgacc cggcgcgggt ccatcttctc ccgcagggcg tcgaaggcct gcttggcgag
      901 gagatagccg atcttggccg tccacgtccg cgacatggcg gcgcgcaggt actcgccgat
      961 ctgcttggcc gtgccctcgg ccgttttcag cgcgatgttc cccgtaaagc cctccgtgac
     1021 gaccacgtcg accgtgccct tgccgatgtc gtcgccctcg acgaagccgt gataggcgaa
     1081 ctgcggcagg ttggtctcgc gcaggatccg ccctgcctcc ttgaccatct cgacgccctt
     1141 gatctcctcg gtgccgacgt tgaggagccc gacggttggc cgttcgacgc cgagcacgat
     1201 gcgcgccatg gcggcgccca tgatggcgag gtcgacgagg tggatggcat cggcgccgat
     1261 ggtggcgccg atgtcgagca cgatgctctc gccgcgcagg gttggccaca tgcccgcgat
     1321 cgcggggcgc tcgatgtgcg ccatggtctt gaggcagatc ttggacatcg ccatgagggc
     1381 gccggtattg ccggccgaca cggcggcatc ggcctctccg tcgcgcaccg cctgaatggc
     1441 gagccacatg gacgaggtcc tacgtcccga gcgcaaggcc tggctcggct tgtcgtccat
     1501 gcgcacggcg acgtcggtgt ggcggacctc ggcggccgcc ttgagggccg ggtgcctgtc
     1561 gaggagaggc tcgatctggg cccggtcgcc gaacaggagg aagcgcgtcc cggggtgccg
     1621 ttcgagcgcg agcgcggcgc cgggaaccac caccgacggc ccgtgatcgc cgcccatggc
     1681 gtctagcgag atgcgcacgg gctcaggcat gaagggagat gtctttccgg ccgatgggtc
     1741 gcggcgcgga aaatagcggc ctgcggcctg cccgcaaccg aattctccgg cgaggcccta
     1801 ctccccgccc ttgagcttgc cgagagccgc aaacggcccc tcggagcggt cgtccctgac
     1861 ctcgtactcg aagtcgacgc cgggcttgcg ggggtacggg tcgaggccga gggcgaggaa
     1921 ctctgcggtg atgctgccga ggtcgatgtg gccgttcacg atctcgtccg gcggctcgta
     1981 ctcgcgctcg ctctcgcccg tggtgagggg gagcgaatcg ggagcggaga agtcgacctc
     2041 gacctcttcg tcgaggttcg agtcgaactc gtcgagggtg acgacacaca cctgcgtcac
     2101 cgccgcggtg atgcgtccgg tgacgcggac ccgctcggga gtgccggtca gcttgtagcg
     2161 gccgatgagg gaccggatcg ccgccagctt aaagtctgcg gcgagtgccg cacattcctc
     2221 cgccgtcgcc tcgacggtgg cctcgatgcc ccgtgcgggc aggttgtcga cggcgaccgg
     2281 ccgcgacagc gggccgaccg attcgggggt gacgctgtcg cgcgttctgc tgtcccgcct
     2341 catgacgata cctccggaac ggccgcgccg ggctcatcgt gcggcgccgg gaatcggggc
     2401 ccctcgcgca gcatggcctc gagcgtcatg ccgacaagcc cgcggcgggc gctcagcaca
     2461 taacgcgcaa gcgcgtctcc gggtgtcgcc ccggcataga cgttgcgagc aagcgccgcc
     2521 gcgagcgccg tctcgtcgcc cgaagcaagg gccgcgtcgt aggctctggc gcgcccgtag
     2581 aatgcctggg cgagggcctt catgcgcttg ggcacgacca cgtccccgac gcccatctcc
     2641 cgcaaggacg cctcgagctg ccgaaacact tcatcgacga gttcctgccc aacctcgtcg
     2701 gcgggcgcat cgaggcgacg cagtgcttcg aggaccagga cgacgtggag cgtcagcacc
     2761 tcgaaacggc cctcgagggt gtcggggacc cgaagggagc cgtagaggtc cggatggcgg
     2821 gccgccgcga cgatgcgctg gtgcagcgcc gcaatcaccg ggcgccgggg atccttgcgg
     2881 aacagaccga acaccatcgc accctcacgc cgaccgccgc cttgtcaaag cggtgccccc
     2941 gcgttacgcc atcgccctct tgcggcgcaa gctcgaccgc gcccgaccca tggattcgtg
     3001 catgacccgc cggacgacaa cgaccctcgc gcgcctcgcc gccgtcgctg ccatcggcgt
     3061 gctggccgcc gcctgcaaca tcggcgagaa cttccagcac ggctacatcg tcgacgagca
     3121 ggcggtcgct cgaatccggc ccggcatgag cgccgaccag gtgctgcaga cgctcgggac
     3181 gccttcgacc gtgtccaccg tcggcaacaa gagctggtac tacatcagcc agggcacgcg
     3241 gcgccgcgtt cagttcctca atccgagcac caccgaccag cgcgtcaccg ccgtctactt
     3301 caatcagggc ctgcgcgtag agcgcgtggc gctgtacggc ctcgaggacg gcaaggtgtt
     3361 cgattttatc acccgcacga cgccggccgg gggtggcgat cagaacttcg tcagccagct
     3421 cttccgcggc ctcggccgct ggcctgtctg atcctgacgc gtaagccccg gcgtgccggg
     3481 cctcagcccg ccgcctgaag cagtcttgcg gcggcggcgc gggcttcgtc cgtgacggtt
     3541 gccccggcga gcatgcgggc gatctcttcc tgacgaggtg cgggcgccag cggcgccacg
     3601 cgtgtcgcga cgcgggccga cttcgccacc ggctccttgg cgatgaggaa gtggcgcgcg
     3661 gcgcgcgcgg cgacctgagg tgcatgcgtc accgcgacca cctgcacgcg ttcggcgagg
     3721 cgggcgaggc gctggccgat ggcgtcggcg accgcgccgc cgactcccgt gtcgatctcg
     3781 tcgaagacga gcgtcggcgc tgagcccttg tcggcgagca ccaccttcag cgcgagcatg
     3841 aaccgcgaca gctcgccccc cgaggcgacc ttcatcagcg gccctggctt ggtgccggga
     3901 ttggtctgcg cgaagaactc gatgcggtcg aagcccgcgg cgtcgcggct cgattcgtcg
     3961 gtcgcgattt cggtgatgaa gcgggcccgc tcgagcctga gcggcggcaa ctccgcctgc
     4021 acggccttgt cgagtgcctt ggccgcccga cggcggccct tcgagagtgt cgccgcggtc
     4081 gccacatagc tctcgtcggc ctgcgcgacc gcgcgctcga gggccgacag gcgctcttcg
     4141 ccggcatcga tggcagcgag ctgcgcctcg aagcgggcgc gcacggccga gagctcgtcc
     4201 gcaggggagt tatacttgcg ggcggcggcg cgcagcgcga agagccgctc ctcggcgcgc
     4261 tcgagctcgt cggggtcgtg ctcggaggcg cgcaccgccg cctcgagcgc cgtgcgggcc
     4321 tcgtcgagag caaccagcgc gccgtcgagc gc
//
LOCUS       DASQWN010000504         4341 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_936552, whole genome shotgun sequence.
ACCESSION   DASQWN010000504 DASQWN010000000
VERSION     DASQWN010000504.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 4341)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4341)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4341
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_936552"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..941)
                     /locus_tag="VE686_09435"
     CDS             complement(<1..941)
                     /locus_tag="VE686_09435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009796471.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class I/II-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HYY84705.1"
                     /translation="MPDADARRYRPETDLVHAGGLRSEFGETSEALFLTQGHVYPSAE
                     DCEARFKGESPGFIYARFSNPTVTMFERRMAAFEGAEAARATASGMAAVTTALMGLVR
                     AGDHVVSSKALFGSCRYVVSELLPRFGVASTMVDGPDLAAWRAAVRPNTKAFFLESPA
                     NPTLEVIDIAAVAEIAKGAGAKLVVDNVFSTPLWQRPLALGADCVVYSATKHIDGQGR
                     CLGGVILGSQEFIETHVHTLLRQTGPSMSPFNAWVLLKALETLPIRIERQTRTAGEIA
                     EALAGHPKVRRLVYPGRADHPQAEVIKRQMSGGSTLIA"
     gene            complement(1171..1332)
                     /locus_tag="VE686_09440"
     CDS             complement(1171..1332)
                     /locus_tag="VE686_09440"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY84706.1"
                     /translation="MRLLVPTFVSERLLAPTLVSERLLAPERSLVPAFMLDPELEPEL
                     VPGLVDVCA"
     gene            complement(1384..1509)
                     /locus_tag="VE686_09445"
     CDS             complement(1384..1509)
                     /locus_tag="VE686_09445"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY84707.1"
                     /translation="MRLETYFFFFTTLRTVVGASSETSTLRRRVTETLGCSVVRL"
     gene            complement(1546..1881)
                     /locus_tag="VE686_09450"
     CDS             complement(1546..1881)
                     /locus_tag="VE686_09450"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY84708.1"
                     /translation="MSGAYWREPPVLPLVPLVPEVEPPPEPLVPTEAPLPPDVLVSPL
                     RDVDPVVVARSRVPVDTDVPVVERSRVPVETETPVRVELTPRFSTATPPVRCTLVRRT
                     ETLEGSSTT"
     gene            complement(1979..2608)
                     /locus_tag="VE686_09455"
     CDS             complement(1979..2608)
                     /locus_tag="VE686_09455"
                     /EC_number="1.14.11.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012331744.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008198 - ferrous iron binding [Evidence
                     IEA];
                     GO_function: GO:0016705 - oxidoreductase activity, acting
                     on paired donors, with incorporation or reduction of
                     molecular oxygen [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2OG-Fe(II) oxygenase"
                     /protein_id="HYY84709.1"
                     /translation="MALSLVNVEAVRNAPVTTEPYHYFLGAGLLKDEAVPDLKRDFPA
                     IDKPGYLTVDEVQLKGRFKTLIDELESPEFTEEISRKWGKDMHPYPRLTTIMKKSQPK
                     YGAIHTDGPSKVMTMLVYMNDDWGSDDGGRLRVLYDGKNYEPYAVEVPPVMGTVFGFL
                     RSDNSWHGHRPFSGERKVIQIAWVTNADELERKKKRNSTAQFFKSIFGR"
     gene            complement(2709..3293)
                     /locus_tag="VE686_09460"
     CDS             complement(2709..3293)
                     /locus_tag="VE686_09460"
                     /EC_number="3.1.3.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015932278.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine phosphatase family protein"
                     /protein_id="HYY84710.1"
                     /translation="MAQPTIYFVRHGETDWNAEARLQGQRDVPLNDFGRVQAEEAGAR
                     LRGLVARYEDLAFVASPLSRTRETMERLRDSIGLAPTAYRTDERLRELSFGRWEGLTW
                     KEVRRADPLGAAARQRDKWGYVPPGGESYAMLADRVAPALAELSRDTVVVSHGGVARA
                     TLALRCGIAHTEAPVIDIWQGRILIIEGSRHSWA"
     gene            complement(3296..4120)
                     /gene="fabI"
                     /locus_tag="VE686_09465"
     CDS             complement(3296..4120)
                     /gene="fabI"
                     /locus_tag="VE686_09465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013501146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004318 - enoyl-[acyl-carrier-protein]
                     reductase (NADH) activity [Evidence IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-ACP reductase FabI"
                     /protein_id="HYY84711.1"
                     /translation="MVGTTAPGILAGKRGLIMGVANNRSIAWGIAKAARNHGAELALT
                     YQGDALKKRVEPLAAELGGIVVGHCDVTDPATIDAVFDEVRAKWGSLDFLVHAIAFSD
                     KDELTGRYVETSEENFTKSLLISCYSFTAIAQRAEKLMENGGSLLTLTYYGAEKWMPH
                     YNVMGVAKAALEASVRYLAADLGPQNIRVNAISAGPIKTLAASGIGDFRYILKWNEYN
                     SPLRRTVTIEEVGETAAYFVSDMARGVTGEIFHVDAGYHVVGMKNPEAPDLSLDKV"
BASE COUNT          685 a         1453 c         1508 g          695 t
ORIGIN      
        1 gcgatgaggg tcgagccgcc gctcatctgg cgcttgatga cttccgcctg ggggtggtcg
       61 gcgcggcctg ggtagacgag gcgcctcacc ttgggatggc cggcgagcgc ttcggcgatc
      121 tcgccggcgg tccgggtctg ccgctcgatg cggatcggca gggtctcgag ggccttcagc
      181 agcacccagg cattgaaggg cgacatggac ggaccggtct gccggagaag cgtgtgcacg
      241 tgcgtctcga tgaactcctg cgatcccagg atcacgccgc cgaggcagcg gccctgcccg
      301 tcgatatgct tcgtcgccga atagacgacg cagtcggccc cgagcgcgag cggccgctgc
      361 cacaagggcg tcgagaacac gttgtcgacg acgagcttgg ctccggcccc cttcgcgatc
      421 tcggcgaccg ccgcgatatc gatgacctcg agcgtcgggt ttgcagggct ctcgaggaag
      481 aacgccttgg tgttcgggcg cacggcggcc cgccaggccg cgaggtccgg cccgtcgacc
      541 atggtcgagg ccacgccgaa ccgcggcaga agctccgaca ccacatagcg gcaggagccg
      601 aacaatgcct tcgaggacac cacgtggtca ccggccctga cgaggcccat aagggccgtc
      661 gtcaccgccg ccatgccgct tgcggtggcg cgggccgcct cggcgccctc gaaagccgcc
      721 atacggcgtt cgaacatggt taccgttggg ttcgaaaagc gcgcgtagat gaagcccggg
      781 ctttcgccct tgaagcgggc ctcgcagtcc tcggccgagg gatagacgtg gccctgcgtc
      841 aggaacagcg cttccgaggt ctcgccgaac tccgacctta agccgccggc gtggacgagg
      901 tcggtctcgg gacggtagcg gcgggcatca gcgtcgggca tgacggctcc tctggggagc
      961 cgaggcacat gccaccgtga ggggcgatgc acaatgcccg gcatagcggg cgctcggacg
     1021 gggctcgcct acggggagcc tccgctgcgg tcaggaaccc agcagcccag cttgcgttca
     1081 tgcagtgggg cataaccgct tccagcgagg aacccgtcac atgaaaagaa tggccatcgg
     1141 tctcgccgcc ctgctaatca gcacggcggc ttacgcgcag acgtccacga gccccggcac
     1201 cagttcgggc tcgagttccg ggtcgagcat gaacgccggc acgagcgatc gctcgggggc
     1261 cagcagccgc tcggacacca atgtgggcgc cagcagccgc tcggagacga acgtcggcac
     1321 gagcagccgc acgcgcgtcg gtgtcggcgt caacaccgag tcgcggcgcg aaggcgtctc
     1381 gattcacagc cgcacgaccg agcacccgag cgtttccgtc acgcggcgcc gcagcgtcga
     1441 ggtttctgac gacgcgccga cgacggtgcg caaggtcgtg aagaagaaga aatatgtctc
     1501 gagccgcaag ccggcccgta aggtcgtggt acggagccat cgccgtcacg tggtcgagga
     1561 gccctcgagc gtctcggtcc gccgcaccag cgtgcaccgc accggcggcg ttgcggtcga
     1621 gaaccgcggc gtgagctcga cccggaccgg cgtctccgtc tcgaccggga cccgtgagcg
     1681 ctcgacgacg ggcacgtccg tgtccaccgg cacccgcgag cgcgccacca ccacggggtc
     1741 gacgtcccgc agcggcgaca cgagcacgtc cggcggaagc ggcgcttcgg ttgggaccag
     1801 cggctcgggc ggcggctcga cttccggcac gagcggcacc agcggcagca cgggcggttc
     1861 gcgccagtaa gctccgctca acgttcgtcg aagcggccgg ggagcgatcc ccggccgttt
     1921 tcatgttgag ctggtcgact tcggttggcg ctacggggct ttagctagcg cgaagcccct
     1981 atcgtccgaa gatgctcttg aagaactggg ccgttgagtt gcgcttcttc ttgcgctcga
     2041 gctcgtcagc gttcgtcacc caggcgatct ggatgacctt gcgctcgccc gagaacggcc
     2101 tgtgcccgtg ccaggaattg tccgagcgca ggaagccgaa caccgtgccc atcacgggcg
     2161 ggacctcgac cgcgtagggc tcgtagttct tgccgtcgta gaggacgcgc aggcggccgc
     2221 cgtcgtcgct gccccagtcg tcgttcatgt agaccagcat ggtcatgacc ttcgacggcc
     2281 cgtccgtgtg aatggcgccg tacttcggct gcgacttctt catgatcgtc gtgaggcgcg
     2341 ggtacggatg catatccttg ccccacttgc gcgagatctc ctcagtgaac tccgggctct
     2401 cgagctcgtc gatcagggtt ttgaagcggc ccttgagctg gacctcgtcc acggtcaggt
     2461 agcccggctt gtcgatggcc gggaagtcgc gcttgaggtc cgggaccgcc tcgtccttga
     2521 ggagcccggc gccgaggaaa tagtgatacg gctcggtcgt caccggcgca ttacgcaccg
     2581 cctcgacgtt caccagcgac aatgccatgg gaatgccccc gttggttcgg gccggaccct
     2641 agttttgcgc gcggaccaga tcaaggttcc gaggcctgcg acgaagccgc gccgacgagg
     2701 cgcaaaggtc acgcccagga gtgccgcgac ccttcgatga tcaagatgcg gccctgccag
     2761 atgtcaatga caggcgcctc ggtgtgcgcg atgccgcacc gcaaggcgag ggtcgcccgc
     2821 gcgaccccgc cgtgggacac gaccaccgtg tcgcgcgaga gctcggcgag agctggagcg
     2881 acgcgatccg ccagcatggc gtagctttcc ccgcccgggg gcacgtagcc ccacttgtcg
     2941 cgctgacgcg ccgcggcgcc cagcggatcg gcgcgccgga cctctttcca ggtgaggccc
     3001 tcccagcgac cgaacgacag ctcccggagg cgctcgtccg tgcggtaggc ggtcggcgcg
     3061 aggccgatgc tgtcgcgcag gcgctccatg gtctcgcgcg tgcggctcag cgggctcgcc
     3121 acgaaggcga ggtcctcgta gcgcgcgacg agcccgcgca ggcgcgcgcc ggcctcctct
     3181 gcctgcaccc ggccgaaatc gttgagggga acgtcgcgct gcccctgcag gcgcgcttcg
     3241 gcgttccagt ccgtctcgcc gtggcggacg aagtagatcg tcggctgcgc cacgctcaca
     3301 ctttgtcgag gctcaggtcc ggggcctcgg ggttcttcat gccgacgaca tggtagcccg
     3361 cgtcgacgtg gaagatctct ccggtgaccc cgcgcgccat gtcggagacg aaatacgcgg
     3421 ccgtctcgcc gacctcctca atggtcaccg tgcgccgcag gggcgaattg tattcgttcc
     3481 acttgaggat gtagcggaag tcgccgatgc cggacgcggc cagcgtcttg atgggtccgg
     3541 ccgagatggc attgacgcgg atgttctgcg gcccaaggtc ggcggcgagg tagcgcacgc
     3601 tcgcctcgag ggccgccttg gcgacgccca tgacgttgta gtgcggcatc cacttctcgg
     3661 cgccgtagta ggtcagcgtg aggagcgagc cgccgttctc catcagcttc tcggcccgct
     3721 gcgcgatcgc cgtgaaggag tagcaggaga tgaggagcga cttggtgaag ttctcctcgc
     3781 tcgtctcgac gtagcggcca gtgagctcgt ccttgtcgga gaaggcgatg gcatggacga
     3841 ggaagtcgag cgagccccac ttcgcccgaa cctcgtcgaa gaccgcgtcg atggtggccg
     3901 ggtcggtgac gtcgcaatgg ccgacgacga tgccgccgag ttccgccgcg agcggctcca
     3961 cccgcttctt cagggcgtcc ccctggtagg tgagcgcgag ctcggcgccg tggttgcgcg
     4021 ccgccttggc gatgccccag gcgatggagc ggttgttggc gacgcccatg atcaagccgc
     4081 gcttgcccgc caggatgcca ggcgccgtcg tccccaccat gaatcacccg cgcgttgtcg
     4141 gacaccggtc cgaggtgggg cctgtttagc ggaggcggga tcgtggcgaa agggcgccga
     4201 cgaggcggtc ccgcctttgg ttttgacacg gagtggcgta accagtcgcc gcgccgcccg
     4261 gccccaattg tcgaccgggg ggcgcgcagc gatctggaac gaaaggacag cgatgttccg
     4321 tgctctcctc cgaatcggcg c
//
LOCUS       DASQWN010000505         3487 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1081412, whole genome shotgun sequence.
ACCESSION   DASQWN010000505 DASQWN010000000
VERSION     DASQWN010000505.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 3487)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3487)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3487
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1081412"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..148)
                     /locus_tag="VE686_09470"
     CDS             complement(<1..148)
                     /locus_tag="VE686_09470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008834744.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3309 family protein"
                     /protein_id="HYY84712.1"
                     /translation="MTLGTILLIILILMLIGAVPSWGYSRSWGYGPSGILGVVLVIVL
                     ILVLM"
     gene            343..1431
                     /locus_tag="VE686_09475"
     CDS             343..1431
                     /locus_tag="VE686_09475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013503215.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TRAP transporter substrate-binding protein"
                     /protein_id="HYY84713.1"
                     /translation="MKRREFLTAAGVGAAASAVAMPAVAQSMPEMRWRLSSGFPKSLD
                     TLYGAGETFAKYVAEMTDNKFQIQAFGAGEIVGTFQALDAVSNGTVECAHTASYYYVG
                     KDPTFAIPCAIPFGLNARQMNAWMYHGGGMDLANEFYAKHGLFALPAGNTGTQMGGWF
                     RKEIKTVDDLKGVKMRIAGIAGQVMAKLGVVPQQLAGGDIYPALERGTIDSAEWVGPY
                     DDEKLGFVKVAPYYYYPGWWEGGPMFHVYFNQQKWNDLPKLYKDICMSAAAHANVDAQ
                     AKYDARNPAALRRLVSAGAQLRPYSPELMEAAYKAANELYDELSAKSADWKKLYDSMR
                     AFRNEEYLWFQVAEYTYDNFMIRARARG"
     gene            complement(1506..>3487)
                     /locus_tag="VE686_09480"
     CDS             complement(1506..>3487)
                     /locus_tag="VE686_09480"
                     /inference="COORDINATES: protein motif:HMM:NF024938.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="acetate--CoA ligase family protein"
                     /protein_id="HYY84714.1"
                     /translation="LRRHGYAGRIFPINPTRDSVFGERAYKRVRDVGERVDHAFIMLP
                     TKAVMEAVEDCCIAGVRCATILSNGFAESGPAGRERQSQLVELARRGGLRLVGPNSLG
                     IINLQDKVALSANEILSLPELRAGRHGLISQSGSLMGALLSRGQARGLGFSKLVSVGN
                     EADLGVAEIGEMLIDDPGTDAILLFLETMRNPDGFAAMARRAFACGKPVVAYRLGRSV
                     VGAQLAASHTGALTGDGAALDAFMRELGVVRVETLEALFEIAPLLKGQEPVERRRATA
                     VTTTGGGGALVIDNLDPAIELVPPSTEVVGRLAARGVPIEPAPLVDLTLTGTNASTYG
                     AVLSELMGSPACDIVIAVVGSSSQFRPDRAVTPIADAVAKGSNKPLAVFLTPQADASL
                     SLLADAGIAAFRTPESCADAVRAFLDWRRPTPAAKPERLHVERPAGALAPGEAARVFA
                     ALGVPVISETVLPPDPLSWDAAALAALRYPAVAKVLSCDIQHKTEVGGVVTGIETPEA
                     LRQACLDIVARVRSVRPDAVVEGIQVQPMARGLAEVLVGYRRDPAVGPTVTLAAGGVL
                     AEVYRDFATRIAPVDEAGAHEMIAAVRGLGPIRGYRGLPKGDLDALARAVVCVSRLAL
                     LDGTVVTEAEINPLIVFRHGEGVVAVDALMAQEPA"
BASE COUNT          585 a         1230 c         1189 g          483 t
ORIGIN      
        1 ccatgagcac caggatcagc acgatgacga gcacgacgcc gaggattccg ctcggcccgt
       61 agccccagct ccggctgtag ccccagctcg gcacggcgcc gatcagcatc aggatcagga
      121 tgatcagaag aatggtgccg agtgtcatga tcgtctcctt ccgctcgggc gcttatcgcc
      181 aagcttcgtc attgcaacgc agccgacgcg cgagggtttc ggcgacaaag gacgaggatg
      241 tctgcatgcc gctgccgcaa ccgcgaaccg cgcgaagccc cttcccctcg cacgagagcg
      301 ggcctatgac cccggccaac gttggtgctg gaggagccct caatgaaacg ccgtgaattc
      361 ctgactgccg ccggtgtcgg agccgccgcc tcggccgttg ccatgccggc cgtcgcccag
      421 tccatgccgg agatgcggtg gcgcctgagc tccggattcc cgaagtccct cgacaccctc
      481 tacggggccg gcgagacgtt cgcgaagtac gtcgccgaga tgacggacaa caagttccag
      541 atccaggcct tcggcgccgg cgagatcgtc ggtaccttcc aggccctcga cgcggtctcg
      601 aacggcaccg tcgagtgcgc gcacacggcg tcgtactact atgtcggcaa ggacccgacg
      661 ttcgcgatcc cgtgcgcgat cccgttcggc ctcaacgccc gccagatgaa cgcgtggatg
      721 taccacggcg gcggcatgga ccttgcgaac gagttctacg ccaagcacgg cctgttcgcc
      781 ctcccggccg gcaacaccgg cacccagatg ggcggctggt tccgcaagga gatcaagacc
      841 gtcgacgacc tcaagggcgt gaagatgcgc atcgccggca tcgccgggca ggtcatggcg
      901 aagctcggcg tcgtgccgca gcagctcgcc ggcggcgaca tctatcccgc gctcgagcgc
      961 ggcaccatcg actccgccga gtgggtcggc ccgtacgacg acgagaagct cggcttcgtc
     1021 aaggtggcgc cgtactacta ctatcccggc tggtgggaag gcgggcccat gttccatgtc
     1081 tacttcaacc agcagaagtg gaacgacctg ccgaagctgt acaaggacat ctgcatgtcg
     1141 gccgcggcgc acgcgaacgt cgacgcgcag gcgaagtacg atgcccgcaa tcccgccgcc
     1201 ctcaggcgcc tcgtgtcggc cggggcgcag ctgcgcccgt acagccccga gctgatggag
     1261 gccgcctaca aggccgccaa cgagctctac gacgagctgt cggccaagag cgccgactgg
     1321 aagaagctct acgacagcat gcgcgccttc cggaacgagg agtacctgtg gttccaggtc
     1381 gccgagtaca cctacgacaa cttcatgatc cgcgcccgcg cgcgcggctg acgctcagct
     1441 cccgaacgag cctgccaaga ggccccgcaa ggggcctctt ttcattgcgg ggcccggcgg
     1501 cggcatcatg caggctcctg cgccatcaac gcatccacgg cgacgacgcc ctcgccgtgc
     1561 cggaagacga tgaggggatt gatctcggcc tcggtgacga ccgttccgtc gagaagcgcg
     1621 agccgcgaga cgcagacgac ggcgcgcgcg agcgcgtcga ggtccccctt cggcagaccg
     1681 cgatagcccc ggatgggccc aagtccgcgc acggctgcga tcatctcgtg cgccccggcc
     1741 tcgtccacgg gcgcgatgcg cgtcgcgaag tcgcgataga cctccgccag taccccacct
     1801 gccgcgaggg tcacggtcgg gccgacggcc ggatcgcggc gataaccgac caggacctcg
     1861 gcgaggccgc gcgccatggg ctgcacctgg atgccttcca cgacagcgtc cggccggacg
     1921 ctcctcacgc gcgcgacgat gtcgaggcac gcctgccgca gagcctccgg cgtctcgatt
     1981 cccgtgacca ccccgccgac ctcggtcttg tgctggatgt cgcacgacag gaccttggca
     2041 acagccgggt atcgcaatgc cgctaaggcc gcagcatccc aggagagcgg gtccggcgga
     2101 agcaccgtct cggagatgac gggcacgccg agcgccgcaa acacgcgggc ggcttccccg
     2161 ggcgcgagcg ctccggccgg gcgctcgacg tggaggcgct ccggcttggc ggcgggcgtc
     2221 ggccggcgcc agtcgagaaa ggcccgcacc gcgtcggcgc agctctcggg cgtgcggaag
     2281 gcggcaatgc cggcgtcggc aagaagcgac agggaggcgt cggcctgggg cgtgagaaag
     2341 acggcgagcg gcttgttgga gcctttcgcg accgcgtccg cgatgggcgt caccgcgcga
     2401 tccggccgga actgcgacga cgagccgacc accgcgatga cgatatcgca tgcgggagaa
     2461 cccatgagct cgctcagcac ggcgccgtag gtgctggcgt tggtccctgt gagggtgagg
     2521 tcgacgagcg gcgccggctc aatgggcacg ccccgggcgg cgagcctgcc gacgacctcg
     2581 gtcgagggcg gcaccagctc gatggcaggg tcgaggttgt cgatcaccag cgctccgcca
     2641 ccgcccgtgg tcgtgaccgc cgtggcgcgc cgccgctcga caggctcctg gcccttcagc
     2701 agcggcgcga tctcgaaaag cgcctcgagc gtctcgaccc tcacgacccc aagctcgcgc
     2761 atgaaggcgt ccagggcggc gccgtctccc gtcagggctc cggtgtgcga ggccgcaagc
     2821 tgcgcgccca ccacggagcg cccgaggcgg taggcgacga cgggcttccc gcacgcgaag
     2881 gcgcgccgcg ccatggcggc gaagccgtcc gggttgcgca tggtctcgag gaacaagagg
     2941 atcgcgtcgg tgccggggtc gtcgatcagc atctcgccga tctcggccac gccgagatcg
     3001 gcctcgttgc cgacggagac gagcttggag aagccaagcc ccctcgcctg cccccgcgac
     3061 aggagcgccc ccatgaggct gccgctctgc gagatgaggc cgtgccgccc ggcccgcagc
     3121 tccggaagcg aaaggatctc gttcgccgac agcgccacct tgtcctgcag gttgatgatg
     3181 ccgaggctgt tcgggccgac gaggcgaagc ccgccccggc gcgcgagctc gacgagctgc
     3241 gactgccgct cccggccggc ggggccgctc tcggcgaagc cgttgctgag gatggtggcg
     3301 caacgcacgc cggcgatgca gcagtcctcg acggcctcca tcacggcctt ggtcggcagc
     3361 atgatgaagg cgtggtcgac ccgttcgccg acatcgcgga cgcgcttgta cgcccgctcg
     3421 ccgaacaccg aatcccgcgt tggattgatc gggaagatgc ggcccgcata gccgtggcgg
     3481 cgcaggt
//
LOCUS       DASQWN010000506         2951 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1479101, whole genome shotgun sequence.
ACCESSION   DASQWN010000506 DASQWN010000000
VERSION     DASQWN010000506.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2951)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2951)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2951
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1479101"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..823)
                     /gene="tsaE"
                     /locus_tag="VE686_09485"
     CDS             complement(<1..823)
                     /gene="tsaE"
                     /locus_tag="VE686_09485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012456635.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     ATPase subunit type 1 TsaE"
                     /protein_id="HYY84715.1"
                     /translation="MTATQSPADTANGETAVWHVPLADPAATEALARIIAPELKAGDL
                     VGLSGGLGAGKTTFARALLRALADDARLEVPSPTFTLMQVYDTPAGTVVHADLYRLGG
                     AAELNELGFDEISERAITIVEWPERGEGALPATRLAVALDLDTARGPEARTAVIAGTG
                     TFAPRLARMKAVQLMLEGAGWDDARRVLLQGDASTRAYERLTKPSGERAILMISPPRA
                     DGPPVRRGKPYSAIAKLAESVHAFAALDRGLAGLGFSVPTIVAEDLDAGLLLIEDL"
     gene            complement(830..>2951)
                     /locus_tag="VE686_09490"
     CDS             complement(830..>2951)
                     /locus_tag="VE686_09490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012330480.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="PAS-domain containing protein"
                     /protein_id="HYY84716.1"
                     /translation="EGDPTVAGEGATVRRALAFGSWLAPADATRLEGALEGLKHTGEG
                     FRFTARTTAHGYVDIEGRTVGGRALLRLRDVGGERRELLRAQHELEIVRAESTALRTL
                     LDALPQPVWWRDRDGRLAWANSAYAAAVEAKGLDDVKARNLELLDRTARQELNRRRLA
                     GESYSARLPAIVAGGRRVLDVLETPTPFGSAGIALDVSELESVRGDIQRQMEAHVRTL
                     DQLPTAVAMFDAKQRLVFHNAAYRQLWGLDPALLEGRPSEGEILDRLRGARKLPEQAD
                     FRTWKASLLEAYRAVEPQETLWHLPDGRTLRVVANPNPSGGLIYLFDDLSERVRLESQ
                     YNGLIRTQRETLDTLREGVAVFGSDGRLRLFNRAFADLWRLGEGALAGEPHIDAVMMK
                     CRTLAPAEEPWAKIRGAVAGLPETRMGMACRLDRRDGSIIDCAAQPLPDGATLLTFID
                     VTASVNVERALTDKNDALERASQLRDDFVHHVSYELRSPLTNVIGFTQLLGDETVGPL
                     NQRQREYADHIMRSSGALLAILNDILDLASIDTGALELNPEIVDIRDTIAAAASGVED
                     RIAEASLKLVVDAPAAIGTFVADGKRVRQVLFNLLSNAVGFSSPGQTVTVKARKSDED
                     VVFEVSDQGRGIPPEVAARVFDRFESHALGTRHRGVGLGLSMVRSFVELHGGRVELVS
                     EPGRGTTVRCLFPARGTPQRIAAE"
BASE COUNT          395 a         1000 c         1146 g          410 t
ORIGIN      
        1 cgaggtcctc gatgagcagg aggccggcgt cgagatcctc ggcgacgatc gtcgggacgc
       61 tgaagcccag gccggcgagg ccgcggtcga gggccgcgaa ggcgtgcacg ctctcggcga
      121 gcttggcgat ggcgctgtag ggcttgccgc ggcgcaccgg cggcccgtcc gcccgtgggg
      181 gcgagatcat caggatggcg cgctcgcccg agggcttggt caggcgctcg taggcgcggg
      241 tcgaagcgtc gccctgcagg agcacgcggc gggcatcgtc ccacccggcg ccttcgagca
      301 tgagctgcac ggccttcatg cgggcgaggc gcggcgcgaa cgtgccggtc ccggcgatga
      361 cggccgtgcg agcctccggg cccctggcgg tgtcgaggtc gagcgcaacg gcgagccgcg
      421 tggcagggag ggcgccttcg ccgcgctccg gccactcgac gatggtgatc gcccgctctg
      481 agatctcgtc gaagccgagc tcgttgagct cggccgcgcc cccgagccgg tagagatcgg
      541 cgtgcacgac ggtgcctgcc ggcgtgtcgt agacctgcat gagcgtgaac gtcgggctcg
      601 gcacctcgag gcgcgcgtcg tcggcaaggg cccgcaggag tgcccgcgca aaggtcgtct
      661 tgcccgcgcc gagcccgccc gagaggccga cgagatcgcc ggccttgagc tccggcgcga
      721 tgatccgcgc aagggcctcc gtggcggccg gatcggcaag agggacatgc cacacggcgg
      781 tttcgccgtt cgccgtgtcg gccgggcttt gggtcgcggt catgcccgcc tattccgccg
      841 cgatgcgctg aggcgtgccg cgggccggga acaggcagcg cacggtcgtg ccgcggcccg
      901 gctccgagac gagctccacg cggcccccgt gcagctcgac gaaggagcgc accatcgaga
      961 gcccgagacc gacgccgcgg tgacgggtgc cgagcgcgtg gctctcgaag cggtcgaaca
     1021 cgcgcgcggc gacctcgggc gggatgcccc ggccctggtc gctcacctcg aacaccacgt
     1081 cctcgtcgga cttgcgcgcc ttcacggtca cggtctgccc cggtgacgag aagccgacgg
     1141 cgttggaaag gagattgaac agcacctgcc ggacgcgctt gccgtcggcg acgaaggtgc
     1201 cgatggccgc cggcgcgtcg acgacgagct tgagggaggc ctcggcgatg cggtcctcga
     1261 cgccgctcgc cgccgccgcg atggtgtcgc ggatgtccac gatctcgggg ttcagctcga
     1321 gcgcgcccgt gtcgatggag gcgaggtcga ggatgtcgtt gaggatagcg aggagcgcgc
     1381 ccgacgagcg catgatgtga tcggcgtact cgcgctggcg ctggttcagc ggaccgacgg
     1441 tctcgtcgcc gagaagctgc gtgaagccga tgacgttggt cagcggcgag cgcagctcgt
     1501 acgagacatg gtggacgaag tcgtcgcgca gctgcgaggc gcgctcgagg gcgtcgttct
     1561 tgtccgtcag ggcccgctcg acgttcacgc tggcagtgac gtcgatgaag gtcaggagcg
     1621 tcgccccgtc gggcaggggc tgcgcggcgc agtcgatgat ggagccgtcg cgccggtcga
     1681 ggcggcaggc catccccatg cgggtttcgg gcaggcccgc gacggcgccg cggatcttcg
     1741 cccaaggctc ctcggcgggc gcaagcgtgc ggcacttcat catcacggcg tcgatatgcg
     1801 gctcgcccgc gagcgcgcct tcgcccaagc gccagaggtc cgcgaaggcg cggttgaaga
     1861 gacgcaggcg cccgtcgctg ccgaacacgg ccacgccctc gcgcagggtg tcgagggtct
     1921 cgcgctgggt gcggatgagg ccgttgtact gcgactcgag tcgcacgcgc tcggacaggt
     1981 cgtcgaagag gtagatgagc ccgccgctcg ggttggggtt ggcgacgacg cgcagggtgc
     2041 gtccgtcggg gaggtgccac agggtctcct gcggctcgac ggcgcggtag gcttcgagca
     2101 gcgacgcctt ccaggtgcgg aagtcggcct gctcgggcag cttgcgggcc ccgcgcagcc
     2161 ggtcgaggat ctcgccctcg ctcggccggc cttcgagcag ggccgggtcg aggccccaga
     2221 gctggcgata ggcggcgttg tggaacacga gccgctgctt ggcgtcgaac atggcgaccg
     2281 ccgtcggcag ctggtcgagg gtgcggacgt gcgcttccat ctggcgctgg atgtcgccgc
     2341 gcaccgactc gagctccgag acgtcgagcg cgataccggc gctgccgaac ggcgtcggcg
     2401 tctcgagcac gtcgaggacg cgccggccgc cggccacgat ggcgggcagg cgggccgaat
     2461 agctctcgcc cgcgaggcgg cggcggttca gctcctggcg cgccgtgcgg tcgaggagct
     2521 ccaggttgcg cgccttgacg tcgtcgaggc ccttggcctc cacggccgcc gcataggcgc
     2581 tgttggccca ggcaaggcgg ccgtcgcggt cgcgccacca caccggctgg ggcagggcgt
     2641 cgaggagcgt gcgcagcgcc gtcgactcgg cccgcacgat ctcgagttca tgctgcgcgc
     2701 gcaggagctc gcggcgctcg ccgccgacgt cgcgcaggcg caggagcgcg cggccgccga
     2761 cggtgcggcc ttcgatgtcg acgtagccgt gcgcggtggt gcgggcggtg aagcggaagc
     2821 cctcgccggt gtgcttcaag ccctcgaggg caccctcgag ccgcgtcgcg tcggcgggcg
     2881 cgagccagga tccgaaggca agcgcccggc gcaccgtggc accttcgccc gcgaccgtcg
     2941 gatcgccctc g
//
LOCUS       DASQWN010000507         3889 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1379356, whole genome shotgun sequence.
ACCESSION   DASQWN010000507 DASQWN010000000
VERSION     DASQWN010000507.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 3889)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3889)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3889
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1379356"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1583
                     /gene="ftsZ"
                     /locus_tag="VE686_09495"
     CDS             <1..1583
                     /gene="ftsZ"
                     /locus_tag="VE686_09495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009764016.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_process: GO:0000910 - cytokinesis [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="cell division protein FtsZ"
                     /protein_id="HYY84717.1"
                     /translation="AQALMSSKSQRIIQMGLQVTEGLGAGSQPEVGRAAAEEVLDEIR
                     DQLSGSHMAFITAGMGGGTGTGAAPVVARVAREMGILTVGVVTKPFQFEGVRRMRVAD
                     AGIDELQQSVDTLIVIPNQNLFRVANEKTTFADAFAMADQVLYSGVACITDLMVKEGL
                     INLDFADVRAVMRGMGKAMMGTGEASGEKRANRAAEAAIANPLLDDVSMKGARGLLIS
                     ITGGRDLTLYEVDEAATRIREEVDSEANIILGATFDESLEGIIRVSVVATGIDQALIT
                     DGADVMSAEQRISQVAERLRAEARARAPQVAPAIRAAAPEPVALRQVEALAFDAPAEV
                     AHPEAAQAVLRDEVVLTPMQSKQAVAYDPPPPPAAPVEDEAAGARAPYIPPQAERAIR
                     PARMPRVDELPVPAQNQIRASRGEVDPAQDKRRSLLQRLATVGFGRKDEQAPVAPRAE
                     PQAPVAQPQPQSQPQSAPHRPAVSSVHAEYTKRQAAPQGYRPAQGNLDNQGRSPAPQR
                     NLEDDQLEIPAFLRRQAN"
     gene            1869..2816
                     /gene="lpxC"
                     /locus_tag="VE686_09500"
     CDS             1869..2816
                     /gene="lpxC"
                     /locus_tag="VE686_09500"
                     /EC_number="3.5.1.108"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009764017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008759 - UDP-3-O-[3-hydroxymyristoyl]
                     N-acetylglucosamine deacetylase activity [Evidence IEA];
                     GO_process: GO:0009245 - lipid A biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-3-O-acyl-N-acetylglucosamine deacetylase"
                     /protein_id="HYY84718.1"
                     /translation="MKQSQQTTLRTSVSLSGCGVHSGDEVTVVLHPAEANHGIAFLRT
                     GLPGRRERLIDARHLTVTATELCTVIGERETGAVATIEHLMSALYGLGVDNALVTIDG
                     PEVPILDGSAAPFVAAIDKAGIVGADAPRRYLKVVRPVRVTQGRGFAELRPNDSGFRL
                     DVEIDFESPVIGRQRRAVDMSTPTYRREVARARTFGFMRDVERLWKAGFALGASLENT
                     VAVGDDAIMNPEGLRYADEFVRHKLLDAVGDLALSGLPLLATYRSYCGGHRLNFAVLE
                     ALFASRANYMIVDTGTRRETGYAEIGNGIAVPAYAPDTH"
     gene            3002..>3889
                     /locus_tag="VE686_09505"
     CDS             3002..>3889
                     /locus_tag="VE686_09505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009764018.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein assembly factor BamD"
                     /protein_id="HYY84719.1"
                     /translation="MSIAKAIPGAKLVVRACALAVCGAALAGCDSLASLNPFDTGEKY
                     KPEVVVLQAPEQMYNDGLSRIKNRDFPGAAKKFTDLEKQYSGSEWGRKGLIMTAYANY
                     EGQQYEEAITASRRYLQAHPNTKDAAYAQYLMAMSNYNQIPDVTRDQERAEKAIAALQ
                     ELVERHPKSEYIADAKLKISVAKDQLAAKEMEVGRFYLTQRNYTAAINRFRNVVAKYQ
                     TTRHVEEALERLTEAYMAMGIVSEAQTAAAVLGHNFPDSPWYKDAYTLLRSNGAEPRE
                     NEESWISKAFRGVPRVAQRA"
BASE COUNT          662 a         1356 c         1294 g          577 t
ORIGIN      
        1 atgcgcaggc tctcatgtcg tcgaagtcgc agcgcatcat ccagatgggc ctgcaggtga
       61 cggaaggcct gggcgccggt tcgcagccgg aggtcgggcg cgccgccgcc gaggaggtcc
      121 tcgacgagat tcgcgaccag ctctccggct cgcacatggc cttcatcacc gccggcatgg
      181 gcggcggcac ggggacgggc gcagcgccgg tcgtcgcccg ggtcgcccgc gagatgggca
      241 tcctcacggt cggcgtcgtc acgaagccgt ttcagttcga aggcgtgcgg cgcatgcgcg
      301 tcgccgacgc cggcatcgac gagctgcagc agtctgtcga caccctcatc gtgatcccga
      361 accagaacct gttccgggtc gctaacgaga agacgacctt cgcggatgcc ttcgcgatgg
      421 ccgaccaggt gctctactcg ggcgtggcct gcatcaccga cctgatggtc aaggaagggc
      481 tcatcaacct cgacttcgcc gacgtccgcg ccgtcatgcg cggcatgggc aaggccatga
      541 tgggtaccgg cgaggcttca ggcgagaagc gcgccaaccg ggcggccgag gcggcgatcg
      601 ccaatccgct cctcgacgac gtctccatga agggcgcccg cgggctcctg atctcgatca
      661 cgggcgggcg cgacctgacc ctctacgagg tcgacgaggc cgcgacgcgc atccgcgagg
      721 aggtcgactc ggaggccaac atcatcctcg gcgcaacctt cgacgagagc ctggaaggca
      781 tcatccgggt ctcggtcgtg gcgaccggga tcgaccaggc gctgatcacc gacggcgccg
      841 acgtcatgag cgccgagcag cgcatctcgc aggtggcgga acgcctgcgc gccgaggctc
      901 gtgcccgcgc gccgcaggtt gccccggcga tccgcgctgc tgctccggaa cctgtcgcgc
      961 tgcgccaggt cgaggcgctc gccttcgacg cgccggccga ggtcgcccac cccgaggccg
     1021 cccaggcggt cctccgcgat gaggtggtcc tgacgccgat gcagtcgaag caggcggtcg
     1081 cgtatgaccc gccgccgccg cccgcggcac cggtggagga cgaagccgcc ggagcacgcg
     1141 cgccctacat cccgccgcag gccgagcggg cgattcgccc cgcccgcatg ccccgtgtcg
     1201 acgagttgcc ggtcccggct cagaaccaga tccgggccag ccgtggcgag gtcgacccgg
     1261 cgcaggacaa gcgccgttcg ctgctgcagc gtctcgcgac ggtgggcttc ggtcgcaagg
     1321 acgagcaggc gccggtggct cctcgggcgg agccccaggc tcccgtcgcg cagccgcagc
     1381 cgcagtcgca gccgcagtca gcgccgcacc gccccgcggt gtcgtcggtc catgccgagt
     1441 acacgaagcg tcaggccgcc ccgcagggct atcgcccggc gcaaggcaat ctggacaacc
     1501 agggcaggtc gcccgcgccg cagcggaacc tcgaggacga tcagctcgag attcccgctt
     1561 tcctccgccg ccaggcgaac tagcgccgtc gagcgcttcg gcgagggccc tcggacgcac
     1621 cgcgtccggg ggccgtcgtg ctgggaaaat cgcgaaggtt caattactta gggccaaaga
     1681 cgggttgtaa cacgccgtaa gaaagcgtga tttggcctca ccgctcgcca ccagtatggt
     1741 gcctccaagt caaaaaaggg gcgaccgctt ctctccttgg agcggtcggg gaccaggcag
     1801 caagcagcgg caagagctct ttcagcgcga cgcgagttgc gctcggtgca gtcggccggg
     1861 gtcaaagaat gaaacaaagc cagcaaacga cccttcgcac gtcggtcagc ctctccgggt
     1921 gcggcgtgca ctccggcgac gaggtcacgg tcgttctgca tcccgccgag gcgaatcacg
     1981 gcattgcctt tctccggacc ggcctcccgg ggcgtcgcga gcgtctgatc gacgcccgcc
     2041 acctcaccgt gacggcaacc gagctctgca ccgtcatcgg cgagcgcgaa accggcgccg
     2101 tcgcgacgat cgaacacctg atgtccgcgc tttacggact tggcgtcgac aatgcgctcg
     2161 tcacgatcga cggccccgag gttccgatcc tcgacggcag cgccgccccc ttcgttgcag
     2221 cgatcgacaa ggccggaatt gtcggtgccg atgcgccgcg ccgctatctc aaggtcgtcc
     2281 gtcccgtacg cgtgacgcag ggcaggggct tcgccgagct gcgcccgaac gacagcggct
     2341 tccgtctcga cgtcgagatc gatttcgaga gcccggtgat cggccgccag cggcgcgccg
     2401 tcgatatgtc gacgcccacc taccgtcgcg aggtcgcccg cgcccgcacg ttcggcttca
     2461 tgcgcgacgt cgagcgcctg tggaaggctg gctttgccct cggcgcctcc ctcgagaaca
     2521 ccgtcgctgt cggcgacgac gcaatcatga accccgaggg cttgcgctac gcggacgagt
     2581 tcgtccgcca caagctcctc gacgccgtcg gggatctcgc gctctcgggt ctgccgctgc
     2641 tcgcgaccta tcggtcgtac tgcggtggcc atcggctcaa ctttgccgtc ctcgaggccc
     2701 tgttcgcgag ccgcgcgaac tacatgatcg tcgacaccgg cacgcgccgc gagaccggct
     2761 acgccgagat cggaaacggc atcgccgtcc cggcctacgc gcccgacacg cactaggagc
     2821 gattcgtccg agggcctgac gtcgcctctg cggacagggg cggctgcggt gcggccctgc
     2881 gcctcatcgc gcgcgggctc tcgggggcgc ctgcggactt ggcgcttcac ctccccatga
     2941 ggtagatagc gccgatgcgt cgcgaacaat gcgaccaact tctttggagg gcagactagg
     3001 catgtcgatc gctaaggcca ttcccggtgc gaagctcgtc gtgcgcgcat gcgcgctggc
     3061 ggtctgcggc gccgcgctcg ccggctgcga cagcctcgcg tcgctcaacc cgttcgacac
     3121 gggcgagaag tacaagcccg aggtcgtcgt gctgcaggcg cccgagcaga tgtacaatga
     3181 cggcttgagc cgcatcaaga accgggactt tcccggtgcc gccaagaagt tcacggacct
     3241 cgagaagcag tactccgggt cggagtgggg ccgcaaaggc ctcatcatga ccgcgtatgc
     3301 gaattacgag ggccagcagt acgaggaagc catcacggcg tcgcggcgct acctgcaggc
     3361 ccatccgaac accaaggacg cggcttacgc ccaatacctg atggcgatgt cgaactataa
     3421 tcagattccg gacgtgacgc gtgaccagga acgcgccgag aaggccatcg ctgcgctgca
     3481 ggagcttgtg gagcgtcatc ccaagtccga gtacatcgcc gacgccaagc ttaagatctc
     3541 cgttgcgaag gaccagctcg ccgccaagga gatggaggtc ggacggttct atctgacgca
     3601 gcgcaattac acggcggcca tcaaccggtt ccgcaatgtg gtcgccaaat accagacgac
     3661 gcgccacgtc gaggaggcgc tggagcgcct caccgaggcc tacatggcca tggggatcgt
     3721 gagcgaggcg cagaccgccg cggcggtgct cgggcacaac ttcccggaca gcccctggta
     3781 caaggacgcc tatacgctcc tgcggtccaa cggtgccgag ccgcgcgaga acgaagaatc
     3841 ctggatcagc aaggccttcc gcggtgttcc gcgcgtggcc cagagagcg
//
LOCUS       DASQWN010000508         2867 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1379434, whole genome shotgun sequence.
ACCESSION   DASQWN010000508 DASQWN010000000
VERSION     DASQWN010000508.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2867)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2867)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2867
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1379434"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..219)
                     /locus_tag="VE686_09510"
     CDS             complement(<1..219)
                     /locus_tag="VE686_09510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012453335.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gene transfer agent family protein"
                     /protein_id="HYY84720.1"
                     /translation="MPNRRRGELALELGGQRYILCLTLGALAELEDAFAVQDLQSLGE
                     RFASGRLSARDLVKILAVSLRGGGHALTD"
     gene            complement(233..643)
                     /locus_tag="VE686_09515"
     CDS             complement(233..643)
                     /locus_tag="VE686_09515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012321882.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0044423 - virion component [Evidence
                     IEA];
                     GO_function: GO:0005198 - structural molecule activity
                     [Evidence IEA];
                     GO_process: GO:0019068 - virion assembly [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phage major tail protein, TP901-1 family"
                     /protein_id="HYY84721.1"
                     /translation="MGAQKGKDLLVKIDDGAGGFTTIAGLRTRQLAFNAETVDVTNAE
                     SAGRWRELLAGAGVRRAAISGAGVFKDEASDARLRQIFFDGDIRSYQVLVPDFGRIEG
                     PFQVTSLEYRGDHAGEVTFDMSFESAGALSFTAI"
     gene            complement(663..1073)
                     /locus_tag="VE686_09520"
     CDS             complement(663..1073)
                     /locus_tag="VE686_09520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020090918.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3168 domain-containing protein"
                     /protein_id="HYY84722.1"
                     /translation="MTGPVLALRAAILARLSTDAALTTLMGGVVRLHDEPPRGAEPVY
                     AAFGTAEAKDWSSDGSRGHEQAAAIVVYAKPGSALSGLQAADRIAALLDDASLALLGH
                     RLVALRVVAFAADRDETSNLARATVHLRAVTEVV"
     gene            complement(1070..1399)
                     /locus_tag="VE686_09525"
     CDS             complement(1070..1399)
                     /locus_tag="VE686_09525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017484826.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0044423 - virion component [Evidence
                     IEA];
                     GO_function: GO:0005198 - structural molecule activity
                     [Evidence IEA];
                     GO_process: GO:0019068 - virion assembly [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phage head closure protein"
                     /protein_id="HYY84723.1"
                     /translation="MKHLPIGARARRLVLELPLETPDGFGGVIRSYAPGPLLWGAIEI
                     VHQAERERGASTEQAVTHRVRLRWRDGVTGAMRLSCGPRQFRIRAATDPDGAKRDLVC
                     LVEEVSP"
     gene            complement(1482..2051)
                     /locus_tag="VE686_09530"
     CDS             complement(1482..2051)
                     /locus_tag="VE686_09530"
                     /inference="COORDINATES: protein motif:HMM:TIGR02215.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY84724.1"
                     /translation="MDPILVDGPAVEPVTVPEMRAWLRLDDAAEDPVVAALIMAARLA
                     VETAARRILIESRWRAVVDAWPAGRVVRLPLSPVIAVDTVEVVDAAGVAHALVASAYR
                     IHVASDPARLFIDTSAPEPGITPGGIAIEFRAGFGATAAAVPEPLRHAVRLLVARWFE
                     HRGDEAEPARAALPDDVVTLVSPYRRARL"
     gene            2050..2826
                     /locus_tag="VE686_09535"
     CDS             2050..2826
                     /locus_tag="VE686_09535"
                     /EC_number="3.4.21.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018259818.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004252 - serine-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="trypsin-like serine protease"
                     /protein_id="HYY84725.1"
                     /translation="MDFSGTVEVLHVLVRLPAPVAAMLGLLAASPAAAIVGGAENAGP
                     LGAASLMVLSSNGGVCSAVVVAPDAVLTAAHCAAGGAEHRVHWRGDDAHPVLIAPAAK
                     DIHPGYVANAIATRRRSIDLALLRLPKPLPARFSQAVLSGTPVGAGTALEVGGYGVLS
                     EGDARTTGTFRTAAVTVVEPYGPSKILVWTRGRAGVGACSGDSGGPIAAGASVVAIVA
                     FAKGSKGRDCGDLTQGTLLFPQRAWIDATLRSWGRSAHWE"
BASE COUNT          408 a          994 c         1073 g          392 t
ORIGIN      
        1 gtccgtgagc gcatgcccgc cgccgcgcag cgagaccgcg aggatcttga cgagatcgcg
       61 ggcggacagc cgcccggagg cgaagcgctc gccgagcgac tgaaggtcct ggaccgcgaa
      121 ggcgtcctcg agctcggcga gcgccccgag cgtcaggcac aagatgtagc gctgtccccc
      181 gagctcgagc gcgagctcac cgcggcggcg gttcggcatg gtgctctcct gctcaaatgg
      241 ccgtgaagct cagcgcaccg gcgctctcga agctcatgtc gaaggtgacc tcgccggcgt
      301 gatcgccgcg gtactcgaga ctcgtcacct ggaatggtcc ctcgatgcga ccgaagtccg
      361 gcacgaggac ctggtagctg cggatgtcac cgtcaaagaa gatttggcgc aggcgcgcgt
      421 cggaggcctc gtccttgaac acacctgcgc ccgagatggc ggcgcggcgc acgccggcgc
      481 cggcgaggag ctcgcgccag cgccccgccg actcggcgtt cgtcacgtcg accgtctcgg
      541 cgttgaaggc gagctggcgc gtgcgcaggc ccgcaatggt ggtgaagccc cctgccccgt
      601 cgtcgatctt gacgagcagg tccttgcctt tctgagcacc catgattgtt cctttcggga
      661 ggtcaaacga cttcggtcac ggcgcgcagg tggaccgtgg cgcgggctag gttcgaggtt
      721 tcgtcgcggt cggccgcgaa tgcgacgacg cgcagggcga cgaggcgatg gccgaggagc
      781 gccaggctgg cgtcgtccag aagcgccgcg atccggtccg ccgcctgcag gcccgacagg
      841 gcgctgccgg gcttggcgta gacgacgatt gcggccgcct gctcgtggcc gcgcgagccg
      901 tcgctcgacc agtccttcgc ctcggccgtg ccaaaggcgg cgtacacggg ctcggcgccg
      961 cgcggcggct cgtcgtgcag gcgcacgacg ccgcccatta gggtcgtgag ggcggcatcg
     1021 gtagaaaggc gcgccaggat cgcggcgcgc aacgcaagca ccgggcccgt catggcgaga
     1081 cctcctcgac gaggcacacg agatcgcgct tggcgccgtc cggatcggtc gcggccctga
     1141 tgcggaactg gcgcgggccg cacgacaggc gcatggcgcc ggtgacgccg tcgcgccagc
     1201 gcaggcgcac gcggtgcgtg acggcctgct cggtgctcgc cccgcgctcg cgctcagcct
     1261 gatgcacgat ctcgatggcg ccccagagca ggggtcccgg cgcataggag cggatcacgc
     1321 cgccgaagcc gtcgggcgtt tcgagcggca gctcgagcac taagcggcgc gcccgcgcgc
     1381 cgatgggcag gtgtttcatg cgaacgtctt tcgtgagggt cgcctctccc gcatgcggga
     1441 gaggtcgagt ccgcgcagcg gaccgggtga gggcggcagc gctacagacg ggcgcggcgg
     1501 taaggcgaga cgagcgtcac gacatcgtcc ggcaacgcgg cccgcgcggg ctccgcctcg
     1561 tcgccgcggt gctcgaacca gcgcgcaacg aggagccgga cggcgtgccg gaggggctcc
     1621 ggcaccgcgg ccgcggtggc accgaagccg gcgcggaatt cgatggcgat tccgcccggc
     1681 gtgatgcccg gctcgggcgc gctcgtatcg atgaagagcc gcgcggggtc gctcgcgacg
     1741 tggatgcggt aggcgctcgc cacgagcgcg tgcgccacgc ccgcagcatc cacgacctcg
     1801 acggtgtcga ccgcgatcac cggcgacagg ggaagccgca ccacgcgccc ggcgggccag
     1861 gcatcgacca ccgcgcgcca gcggctctcg atgaggatgc gccgggctgc ggtctccacc
     1921 gcgagccgag cggccatgat gagggctgcc acgaccgggt cttccgcagc gtcgtcgagg
     1981 cgcagccaag cgcgcatttc cggcacggtg acgggctcga cggcagggcc gtcgacgagt
     2041 atcgggtcca tggatttctc cggaacggtt gaggtgctgc acgtgctggt ccgattgccc
     2101 gcgcccgtcg ccgctatgct cggcctgctc gcggcgtcgc cggccgccgc catcgtgggc
     2161 ggtgccgaga acgccggtcc gctcggcgcg gcgagcctga tggtgctgtc gtcgaacggc
     2221 ggcgtgtgca gcgcagtcgt ggttgcacct gacgccgtgc tcaccgcggc gcactgcgcc
     2281 gcaggggggg ccgagcatcg ggtgcattgg cgcggcgacg acgctcatcc ggtgctgatc
     2341 gcgccggcgg caaaggacat acatccggga tacgtggcga acgccatcgc gacgcggcgg
     2401 cgctcgatcg atctcgcgct cctgcggcta cccaagcccc tgccggcgcg cttctcgcag
     2461 gccgtcttgt cgggcacgcc tgtcggcgcc ggaaccgcgc tcgaggtcgg cggctacggg
     2521 gttctgtcgg aaggcgacgc gcgtacaacc ggcacgttcc gcacggcggc cgtcacggtg
     2581 gtggagccgt acggcccgag caagatcctc gtgtggacgc gcgggcgcgc cggcgtcggc
     2641 gcctgcagcg gcgattcagg cgggccgatc gcggccggcg cgagcgtcgt cgccatcgtc
     2701 gccttcgcca aggggtccaa gggccgcgac tgcggcgacc tcacgcaagg cacgctttta
     2761 ttcccgcagc gcgcctggat cgacgccacg cttcggagct ggggccgcag cgcgcactgg
     2821 gagtgagtct cgaaaacgaa aacgccccgc gggcggtgag ccccggg
//
LOCUS       DASQWN010000509         2107 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1081766, whole genome shotgun sequence.
ACCESSION   DASQWN010000509 DASQWN010000000
VERSION     DASQWN010000509.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2107)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2107)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2107
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1081766"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..623
                     /locus_tag="VE686_09540"
     CDS             <1..623
                     /locus_tag="VE686_09540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009756622.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="aspartate dehydrogenase"
                     /protein_id="HYY84726.1"
                     /translation="GHADVAVEAAPAAVLEAICRPMLEAGKRVLVLSAGALLPRPELV
                     ELARARGGQIIVPTGALLGLDAVTAAAEGTIHSVRMITRKPPHGLAGAPHLVANGISV
                     DGLTEPKLVFSGTARDAAAGFPANVNVAAALSLAGIGPDRTTIEIWADPALTRNHHSI
                     EVDSDSARLTLAIENIPSENPKTGRITAQSVLATLRKLQAPLRIGT"
     gene            795..>2107
                     /locus_tag="VE686_09545"
     CDS             795..>2107
                     /locus_tag="VE686_09545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011926721.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="extracellular solute-binding protein"
                     /protein_id="HYY84727.1"
                     /translation="MADTKVTRRRFMQTTAASAALISAPFVRSAHAAGSLSIGFWDHW
                     VPGANQATEEIVRAWADKEKVEVKMDFITSQGNKNLLTIAAEAQAKSGHDIFAFPTWW
                     PQQHADNLEPVNDLMTELVKQNGAVNGTVEYLGKAKDKWLGVPATVGSQIKGPCSRID
                     LMKQHAGIDVQAMYPAGQAPKADNWNMDTFLKAAEACHKAGVPFGIGLGQTTDSVDTA
                     GAIFQAFGAELVDKSGKITVKSDNVRKVMEYYKRLATFLPPDAPAWDDASNNKWLVSG
                     RGALICNPPSAWAVAKRDAPQIAEQCWTHGMPAGPAGRYAPYLPYFWGIWSFSKNKSA
                     AKSALLALSTHDAIAKMVAVSGGYDLPAYDKLTTLPTWAEEGPPKGTLYHYPNPHNHQ
                     TLSIAAQPAPPAIAFQIYSQAVMTKMVARHLQGEALERTLAWAET"
BASE COUNT          395 a          750 c          682 g          280 t
ORIGIN      
        1 cgggccacgc cgacgtcgcc gtcgaggccg cgcctgccgc ggtgctcgaa gcgatctgcc
       61 gcccgatgct cgaggcgggc aagcgggtcc tcgtgctcag cgccggcgct ctgctacccc
      121 ggccggagct cgtcgagctc gcgcgcgcca ggggcgggca gatcatcgtg cccaccggcg
      181 cgctccttgg cctcgacgcg gtgacggcgg cagccgaagg caccatccat tccgtccgca
      241 tgatcacccg gaagcccccg cacgggctcg cgggcgcgcc gcacctcgtc gcgaacggca
      301 tttcggtcga cgggctgacg gaaccgaagc tggtgttcag cggcacggcg cgggacgccg
      361 cagccgggtt ccccgcgaac gtcaacgtcg cggcggccct gtccctcgcc ggcatcggac
      421 cagaccggac caccatcgag atctgggccg acccggcgct cacgcgcaac caccacagca
      481 tcgaggtcga ctccgactcg gcccggctca cgctggcgat cgagaacatc ccatccgaga
      541 acccgaagac cgggcgcatc acggcgcagt ccgtgctcgc gacgctccgc aagctccaag
      601 cccctctccg catcggcacc tgacgcacgg ttcggacggg attgtcgggc tcctgggaaa
      661 cgtgcaggat gggtgaagac tgtcatggcc ccgtagaatg gtcggacgtc ggctaagaac
      721 aacagaacac gtcgaagccg ccgtcagaca cagggtgtcc ggaaggtcgc tcgaatccaa
      781 tgggaggaaa cactatggcg gacaccaagg tcacccggcg tcgcttcatg cagacgacgg
      841 cagcgtcggc cgcgctcatc tcggcgccgt tcgtgcgcag cgcacatgcg gccggcagcc
      901 tctcgattgg gttttgggat cactgggtgc ccggcgccaa ccaggcgacc gaggagatcg
      961 tgcgcgcctg ggccgacaag gagaaggtcg aagtcaagat ggacttcatc acgtcgcagg
     1021 ggaacaagaa cctgctgacg atcgccgccg aggcgcaggc gaaatccggc cacgacatct
     1081 tcgccttccc gacctggtgg ccgcagcagc acgccgacaa cctcgagccc gtcaacgatc
     1141 tcatgacgga gctcgtcaag cagaacggcg ccgtgaacgg caccgtggag tacctcggca
     1201 aggccaagga caaatggcta ggggtgcccg ccaccgtcgg cagccagatc aagggtccgt
     1261 gctcgcgcat cgacctcatg aagcagcacg ccgggatcga cgtgcaggcc atgtatccgg
     1321 ccggtcaggc gcccaaggcc gacaactgga acatggacac cttcctcaag gccgccgagg
     1381 cgtgccacaa ggcgggcgtt ccgttcggca tcggtctcgg ccagacgacc gattcggtcg
     1441 acaccgccgg cgcgatcttc caggccttcg gcgccgagct cgtcgacaag agcggcaaga
     1501 tcaccgtcaa gtcggacaac gtccgcaagg tgatggagta ctacaagcgc ctcgccacgt
     1561 tcctgccgcc cgacgccccg gcatgggatg acgcctcgaa caacaaatgg ctggtgtcgg
     1621 gacgcggcgc tctcatctgc aacccgccga gcgcctgggc agtcgccaag cgcgacgcgc
     1681 cacagatcgc cgagcaatgc tggacgcacg gcatgcccgc cgggcccgcc gggcgctatg
     1741 ctccgtatct cccctacttc tggggcatct ggagcttctc gaagaacaag tcggcggcga
     1801 agagcgcgct cctcgccctg tcgacgcacg acgccatcgc caagatggtc gcggtgagcg
     1861 gcggctacga cctgcctgcg tacgacaagc tgacgacact cccgacctgg gcggaggaag
     1921 ggccgccgaa gggcacgctc taccattacc ccaacccgca caaccaccag acgctctcga
     1981 tcgcagccca gccggccccg ccggccatcg cgttccagat ctacagccag gcggtgatga
     2041 ccaagatggt cgcgcggcac ctccagggcg aggcgctgga gcggacgctc gcctgggccg
     2101 agaccga
//
LOCUS       DASQWN010000510         2271 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1082051, whole genome shotgun sequence.
ACCESSION   DASQWN010000510 DASQWN010000000
VERSION     DASQWN010000510.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2271)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2271)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2271
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1082051"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1049
                     /locus_tag="VE686_09550"
     CDS             <1..1049
                     /locus_tag="VE686_09550"
                     /EC_number="6.3.2.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012330249.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008765 -
                     UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate
                     ligase activity [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
                     6-diaminopimelate ligase"
                     /protein_id="HYY84728.1"
                     /translation="EGAAYGSLTTPDPISLHETLHRLAGDGITHLALEASSHGIDQRR
                     LDGVRLAAAGFTNLGHDHLDYHGTVDAYRDAKLRLFEVLLPQGAAAVVNADGTMAEPF
                     VEAAALRGLSLMTTGRAGDTVRLLETRSEGFVQKLLLRFHPPGGGARDFAAELPLVGE
                     FQVENALLAAGLVLAADRRVDPEQVFEAFAGLNGVPGRLERVGEVAGALCVVDYAHKP
                     EALAHVLDALRSFTTGRLVCVFGCGGDRDRAKRPMMGAIAAEKADVAIVTDDNPRSED
                     PAAIRAAILAAAPGAREIGDRAEAIRTAVRDLKPGDVLVVAGKGHETGQIVGDRTLPF
                     SDHEVVRAAIAERS"
     gene            1055..>2271
                     /locus_tag="VE686_09555"
     CDS             1055..>2271
                     /locus_tag="VE686_09555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018262897.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0047480 -
                     UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
                     activity [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA];
                     GO_process: GO:0071555 - cell wall organization [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
                     6-diaminopimelate--D-alanyl-D-alanine ligase"
                     /protein_id="HYY84729.1"
                     /translation="MTAPLWTPHDLVAATRGRLVGDMGPASGVSIDTRTLEAGDLFFA
                     IKGDVHDGHGFVRQALAKGAAAAVVAQERANECEGAGTLVVVPDVLAAMAALGIAARA
                     RSRARIVAVTGSVGKTGTKEALRLAFERLGPTHASVASYNNHWGVPLTLARMPAEAAY
                     GVFEIGMNHAGEIAPLTRMVRPHVAIITTVEPVHIEFFPSIAAIADAKGEIFAGIEPG
                     GVAVLNRDNPQFERVRAHALASRAGSILTFGEHAEADVRAERIVLHGDGSAVEARVLG
                     EPVMYRLGAPGRHVVMNSLSVLAAIKAVGGDLALGALALSEVSAPAGRGERIFLEMGD
                     GAFVLVDEAFNANPASMRAALANLAAAKPGPRGRRVAVLGDMLELGRNGPALHRELAE
                     AVTASGADLVFAAG"
BASE COUNT          312 a          839 c          785 g          335 t
ORIGIN      
        1 cggagggcgc cgcctacggc tcgcttacaa cgcccgatcc gatctcgctg cacgaaacgc
       61 tgcaccgcct tgccggcgac ggcatcaccc acctggctct cgaggcctcg tcgcacggca
      121 tcgaccagcg ccgcctcgac ggcgtgcgcc tcgccgccgc agggttcacc aacctcgggc
      181 acgaccatct cgactaccac ggtaccgtgg acgcctatcg cgacgcgaag ctgcgcctgt
      241 tcgaagtgct gctgccccaa ggcgccgccg ccgtcgtaaa cgccgacggc accatggcag
      301 agcccttcgt cgaggcggcg gccttgcgag gcctgtcgct tatgacgacg gggcgggccg
      361 gcgacacggt ccggctgctc gagacgcgca gcgaaggttt cgtgcagaag ctgcttctgc
      421 gcttccaccc gccgggcggc ggtgcccgcg acttcgcggc cgagcttcct cttgtcggcg
      481 agttccaggt cgagaacgct ctccttgcgg ccgggctcgt gctcgcggcc gatcggcgtg
      541 tggaccccga gcaggtgttc gaagccttcg ctgggctcaa cggggttccg gggcggctcg
      601 agcgggtggg ggaggtcgcc ggcgccctgt gcgtcgtcga ctacgcccac aagcccgagg
      661 cgctcgcgca cgttctcgac gccttgagga gcttcaccac gggccggctc gtctgcgtgt
      721 tcggctgcgg cggcgatcgc gaccgcgcca agcggccgat gatgggcgcc atcgcggccg
      781 agaaggccga cgtcgccatc gtcacggacg acaacccgcg ctcggaggac cccgccgcca
      841 tccgcgccgc catcctcgcg gccgccccgg gcgcgcggga gatcggcgac cgcgccgaag
      901 cgattcgcac ggcggtgcgg gacctgaagc ctggggacgt cctcgtcgtc gccggcaaag
      961 gtcacgaaac cggccagatc gtcggcgacc gcaccctgcc gttctccgac catgaggtcg
     1021 tccgggcggc gatcgcggag cgctcctgat cacgatgacg gcccccctct ggacccctca
     1081 cgaccttgtt gccgcgaccc gcgggcgtct cgtcggcgac atgggcccgg catccggcgt
     1141 gtcgatcgac acgcgcacgc tcgaagccgg cgatctcttc ttcgcgatca agggcgacgt
     1201 ccacgacggg cacggtttcg tccgccaagc cctcgcgaag ggagccgctg ctgcggtcgt
     1261 cgcgcaggag cgggcgaatg aatgcgaggg cgccggcacg ctcgtcgtcg tgccggacgt
     1321 gctcgccgcc atggcggcgc tgggcatcgc ggcgcgcgcg cgctcgaggg ccaggatcgt
     1381 cgccgtcacc gggtcggtgg gaaagaccgg caccaaggag gccttgcgcc tggccttcga
     1441 gcgcctcggg cccacgcacg cgtccgtcgc ctcctacaac aaccattggg gggtgccgct
     1501 cacgctcgcc cgaatgccgg ccgaggccgc gtacggcgtg ttcgagatcg gcatgaacca
     1561 cgccggcgag atcgcgccgc tgacccggat ggtgcgtcca cacgtggcca tcatcaccac
     1621 cgtcgagcct gtccacatcg agttcttccc gtcgatcgcc gccatcgccg acgccaaagg
     1681 cgagatcttc gccggcatcg agccaggcgg cgtcgccgtg ctcaaccgcg acaatccgca
     1741 gttcgagcgc gtccgcgccc acgccctcgc gtcccgggcg ggttccatcc tcacattcgg
     1801 cgagcacgcg gaggcggacg tccgggccga acgtatcgtc ctccacggcg acggctcggc
     1861 ggtcgaagca cgcgtcctcg gcgagccggt catgtaccgg ctgggcgcgc ccgggcggca
     1921 cgtcgtcatg aactcgttga gcgtgcttgc cgccatcaag gcggtggggg gcgacctcgc
     1981 gctcggagcg ctcgctctgt cggaggtttc ggcaccggcg ggccgcggcg agcgtatctt
     2041 cctcgagatg ggagacggcg cattcgtgct cgtcgatgag gcgttcaacg ccaatcctgc
     2101 atccatgcgc gccgcgctcg ccaatctcgc cgccgcaaag cccggccctc gtgggcgccg
     2161 ggtcgccgtc ctgggcgaca tgctggaact cggccgcaac ggtccggcac tgcaccgcga
     2221 gctcgccgag gccgtcacgg cgagcggggc cgacctcgtc tttgcggcgg g
//
LOCUS       DASQWN010000511         4253 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_241630, whole genome shotgun sequence.
ACCESSION   DASQWN010000511 DASQWN010000000
VERSION     DASQWN010000511.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 4253)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4253)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4253
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_241630"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(204..1727)
                     /locus_tag="VE686_09560"
     CDS             complement(204..1727)
                     /locus_tag="VE686_09560"
                     /EC_number="3.4.17.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012317728.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004181 - metallocarboxypeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="carboxypeptidase M32"
                     /protein_id="HYY84730.1"
                     /translation="MTDAPAPRAYDALERRFARLAAIEDALGILHWDAETMMPAAAEA
                     GRSDQLATLEAIAHDTLTAPDTGDLLDAAAADEALLDPWRRANLREMRRRYLHAAAVP
                     ADLVEANARAVFRSEMVWREARAASDFALLRPHLSEVLSLQRQVGEAKGAALGLSPYD
                     ALLDSYDPGLRRATIDPVFARLRAGLPELIAEARAAQERLPAAVPLDGPFPVAVQKAL
                     GEALMRAVGFDFARGRLDVSLHPFCGGATEDVRITTRYDEGGFIQALMGVLHESGHAL
                     YEQGRPPEWRRQPVGAARGMSLHESQSLLLEMQAARSPEFLAYLAPLVADAFGRNGPA
                     WTPQNLHRLMTRVEPGFIRVEADEVTYPAHILLRYELETAMIAGDLAVGDLPGAFNAG
                     MAELLGLEVPNDRLGCLQDIHWPGGSFGYFPTYTLGAMMAAQLFEAACRAEPKIPADL
                     GKGDFARLVSWLRQSVHGKASLLTTEELLVAATGRPLDADTFRSHLRRRYIEGAGAP"
     gene            complement(1764..2798)
                     /locus_tag="VE686_09565"
     CDS             complement(1764..2798)
                     /locus_tag="VE686_09565"
                     /EC_number="1.2.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007598796.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004073 - aspartate-semialdehyde
                     dehydrogenase activity [Evidence IEA];
                     GO_function: GO:0016620 - oxidoreductase activity, acting
                     on the aldehyde or oxo group of donors, NAD or NADP as
                     acceptor [Evidence IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA];
                     GO_process: GO:0008652 - amino acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate-semialdehyde dehydrogenase"
                     /protein_id="HYY84731.1"
                     /translation="MGFKVAVVGATGNVGREMLAILDERSFPADEVVAIASRRSQGSQ
                     VSFGDRVLTAKALDTYDFSDVDICLMSAGGEVSKEWSPKIAAQGAIVIDNSSAWRYDQ
                     DVPLVVPEVNAEAVRGFTKKNIIANPNCSTAQLVVALKPLHDHAVIKRVVVATYQSVS
                     GAGKDGMDELDRQTKALYSLQQLEQKKFTKRIAFNVIPHIDVFMEDGYTKEEWKMMVE
                     TKKILDPKIKLTATCVRVPVFIGHSEAVNVEFENPITADEARSILRRAPGIVVIDKQE
                     PGGYITPHEAAGEDPTYISRVREDSTVDNGISFWCVSDNLRKGAALNAIQIAEALVNR
                     GLIEAKKKAA"
     gene            3099..3745
                     /locus_tag="VE686_09570"
                     /pseudo
     CDS             3099..3745
                     /locus_tag="VE686_09570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010913832.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="LysE family translocator"
     gene            4046..>4253
                     /locus_tag="VE686_09575"
     CDS             4046..>4253
                     /locus_tag="VE686_09575"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY84732.1"
                     /translation="MAVVSAVSVAALAYLAEHDGPEHGRSRPVPARPPPALTAPAALW
                     QPLGNATPLFAVDASLLKGQPALVE"
BASE COUNT          570 a         1459 c         1529 g          695 t
ORIGIN      
        1 gaatctgccc gggcgtggtg gcctcgcgtc cgcggccggg ctcacgcgcc cgggcgtggt
       61 cgacgctcgc agccgcgggc tcgggctcgc ccacctcggc gcgccaatcg tcgccgcttt
      121 ccttctcgtc catgaacccg gagatgctca cgccacgcgg attcccgcag catgcctgcg
      181 cccgcagagg ttgggaagcc gcctcaggga gcgccggcgc cctcgatgta gcgccggcgc
      241 aggtggctcc ggaacgtgtc cgcatcgagc gggcggcccg tcgccgcgac gagcaactcc
      301 tccgtcgtga ggaggctcgc cttgccgtga acgctctgcc gcagccacga gacgaggcgc
      361 gcgaagtcgc ccttgcccaa atcggccggg atcttcggct cggcgcggca tgcggcctcg
      421 aaaagctgcg ccgccatcat ggcgccgagc gtataggtcg ggaaatagcc gaagcttccg
      481 cccggccagt ggatgtcctg caggcagccg agccgatcgt tcgggacctc gagcccgaga
      541 agctcggcca tgccggcgtt gaaggcgccc ggcaagtcgc cgaccgcgag gtcgccggcg
      601 atcatcgccg tctcgagctc gtagcgcagg aggatgtggg cggggtaggt gacctcgtcg
      661 gcttcgacgc ggatgaagcc gggctccacc cgcgtcatga ggcggtgcag gttctgaggc
      721 gtccaggcgg ggccgttgcg gccgaaggcg tcggcaacga gcggggcgag gtaggccagg
      781 aactccgggc tgcgcgccgc ctgcatttcg aggagcaggg actggctctc gtgcaggctc
      841 atgccgcgcg ccgcgccgac cggctgccgg cgccactccg gggggcggcc ctgctcgtag
      901 agcgcgtggc cgctctcgtg cagcacgccc atcagggcct ggatgaagcc gccctcgtcg
      961 tagcgcgtgg tgatgcgcac gtcctcggtc gcgccgccgc agaacggatg caggctgacg
     1021 tcgaggcgcc cacgagcgaa gtcgaagccg acggcgcgca tcagcgcctc gccgagcgcc
     1081 ttctgcaccg cgaccgggaa ggggccgtcg agcggcacgg ccgcggggag ccgctcctgc
     1141 gccgcacgag cctccgcgat gagctcgggc aggccggccc ttaggcgcgc gaagacgggg
     1201 tcgatggtcg cccggcgcag gcccgggtcg tagctgtcga gcagcgcgtc gtagggcgag
     1261 agcccgagcg ccgcgccttt ggcctctccg acctgccgct gcagggacaa aacctccgag
     1321 aggtgcggcc gcaggagggc gaagtcgctc gccgcgcgcg cctcgcgcca gaccatctcg
     1381 ctgcggaaca ccgcgcgggc gttggcctcg acgaggtcgg ccggcaccgc tgccgcgtgg
     1441 agatagcgcc gacgcatctc gcgcaggttg gcgcggcgcc agggatcgag gagcgcctcg
     1501 tccgcggcgg ccgcgtcgag gaggtcgccc gtgtccggtg ctgtcagcgt gtcgtgcgcg
     1561 atggcttcga gggtcgcgag ctggtcggag cggcccgcct cggcggcagc gggcatcatc
     1621 gtctcggcat cccagtgcag gatgccgagc gcgtcctcga tggcggcgag ccgcgcgaag
     1681 cgccgctcaa gggcgtcata ggcgcgcggc gcgggcgcgt cagtcaccgc gtcgtcctgc
     1741 agcagccggg ccgagaggcc gctttacgcg gccttcttct tcgcctcgat gaggccccgg
     1801 ttcaccagcg cctcggcgat ctggatggcg ttcagtgcgg cgcccttgcg caggttgtcg
     1861 gacacgcacc agaaggagat gccgttgtcg accgtgctgt cctcacgcac ccgcgagatg
     1921 taggtcgggt cctcgcccgc cgcctcgtgt ggcgtgatgt agccgcccgg ctcctgctta
     1981 tcgataacga cgatgccggg cgcccggcgc aggatcgacc gcgcctcgtc ggccgtgatc
     2041 gggttctcga actcgacgtt caccgcctcc gagtggccga tgaacaccgg cacccgcacg
     2101 caggtggccg tcagcttgat cttcgggtcg aggatcttct tcgtctcgac catcatcttc
     2161 cactcctcct tcgtgtaccc atcctccatg aacacgtcga tgtgggggat cacgttgaag
     2221 gcgatgcgct tggtgaactt cttctgctcg agctgctgca gcgagtagag ggccttggtc
     2281 tgccggtcga gctcgtccat gccgtccttg cccgcgcccg agaccgactg ataggtcgcg
     2341 acgacgacgc gcttgatgac cgcatggtcg tgcaggggct tcagcgccac gacgagctgt
     2401 gccgtcgagc agttcgggtt ggcgatgatg ttcttcttgg tgaagccgcg caccgcctcg
     2461 gcgttgacct cgggcacgac cagcgggacg tcctggtcgt agcgccaggc cgacgagtta
     2521 tcgatgacga tggcgccttg cgcggcgatc ttcggcgacc actccttcga gacctcgccg
     2581 cccgccgaca tcaggcagat gtcgacgtcg gagaagtcgt aggtgtcgag cgccttggcg
     2641 gtgaggaccc ggtcgccgaa agagacctgg ctgccctggc tgcggcgcga ggcgatggcg
     2701 acgacctcgt cggccgggaa tgagcgctcg tcgaggatgg cgagcatctc gcgcccgacg
     2761 ttgccggtgg cgccgaccac cgcgaccttg aaacccatga cccgtctcct gttggctcag
     2821 ctccccgata tataggagcg ccccgcgggc gccgcctctc gccacggctc gggagaggag
     2881 cggggacgag gttgaggatc agccggccgt tttcacggcc gtgcaggggg ctttcgattt
     2941 cagcgccagg gccgacatgg ccgatccatc aagttccgcg agaaatcgcg gttcgtatgg
     3001 agcaacatgc gacggctcct ctgtcaagcc gcgccggagg tggggtatcc ggtcgttgga
     3061 aaattggcac cctcgctttg atgctgtaac ggccggcgat gccagatctg atccagctcg
     3121 ccctgttctt cgccgcagcg ctcgtgctcg ccgtcactcc cggcccgggc atcttctacg
     3181 ttgcagcgcg tagccttgca ggcggtcgtg ccgagggcgt ggcgtccagc ttcggcaccg
     3241 gcctgggggc atggtccacg tcgtcgcggg cagcttgggg gtgtcggccc ttgtgctggc
     3301 gagcgccgag ctgttcacgg cgctcaagct gattggcgcg gcctacctgg tttggctcgg
     3361 cttccgcacg ttccaatcgg cccgcgggga agcgcttggg cttaccggcg gactggcggc
     3421 gccggcaatc gggacctggc gggcgttccg cgaaggggtg ctggtcgagg cgctgaatcc
     3481 gaagacggcg gcgttcttcc tcgcgttcgt tcctcagttc gtggacccgg ctgcgggcca
     3541 cgtagccgtg cagttcgtgg tgctcggtac catctcggtc gtgctcaata ccgctgccga
     3601 catcgtggtc gccgtggccg cgagcgggat ccgcgagggc gccgctgccc gtccggcgct
     3661 ggtccggcgc ctccgggagg ggtcgggagc cgccatgatt gccctcggac tcggcctcac
     3721 cctggcgaag cgtccgggcg gctgagccgg caccctgcgc tggcgccgca aggcgcgacg
     3781 ggggcagccc cgagaaggcc cttccgatcg cgcgggcgcg taaccaacga ttcacgcttc
     3841 cgcacgaaag cgcggccgtg agttaccaag cgttcaagct ggacggtcga atttgacccg
     3901 tccggccgtc gcgccggcgt cagtcgagtt tgcgtcgatg ccggtccctc ccgtccctca
     3961 cgacggcctg ccgtcccgga tggaagccgg gctgcgccgc cgtggagccc cggccagggc
     4021 ccccggcgag ctgccatggc tgcgcatggc cgtggtgtcg gccgtcagcg tcgcggccct
     4081 tgcgtatctc gccgagcacg acgggccgga gcatgggcgc agccgacctg tgccggcgcg
     4141 cccgccgcct gctctcactg ctcctgccgc gctgtggcag ccgctgggga acgcaacgcc
     4201 gttgttcgcc gtcgatgcgt cgctgttgaa agggcagcct gccctggtcg agg
//
LOCUS       DASQWN010000512         2675 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_143076, whole genome shotgun sequence.
ACCESSION   DASQWN010000512 DASQWN010000000
VERSION     DASQWN010000512.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2675)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2675)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2675
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_143076"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1089)
                     /gene="ribD"
                     /locus_tag="VE686_09580"
     CDS             complement(<1..1089)
                     /gene="ribD"
                     /locus_tag="VE686_09580"
                     /EC_number="1.1.1.193"
                     /EC_number="3.5.4.26"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015931750.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008703 -
                     5-amino-6-(5-phosphoribosylamino)uracil reductase activity
                     [Evidence IEA];
                     GO_function: GO:0008835 -
                     diaminohydroxyphosphoribosylaminopyrimidine deaminase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     diaminohydroxyphosphoribosylaminopyrimidine
                     deaminase/5-amino-6-(5-phosphoribosylamino)uracil
                     reductase RibD"
                     /protein_id="HYY84733.1"
                     /translation="MTRGAAAQASGSALRPHDERLMRLALALGQRHVGLTWPNPSVGA
                     LVVDESGGAPRIVAQGITQRAGRPHAERIALDAAGAAARGATLYVSLEPCAHTGKTPP
                     CVDAVIAGGVARVVTSIEDPDPRVSGKGHAALRAAGVEVVTGVLADEARRANQGHILR
                     VTRGRPMVTLKLARTADGFAASATGPRLMITGPAANARVHMMRAHADAIMVGAGTIAA
                     DDPLLSVRLPGLEQRSPVRVVVDSALRTSLTAAVVAGAGENPTWIVTADNAPIEAERR
                     LADRGAEVLRVRGDGEVDLAAALAHLAQRGITRVFCEGGPALADALAAAGLIDEVVLA
                     TAQRSLGGSGLPALGANLEGALASRFRLA"
     gene            complement(1086..1583)
                     /gene="nrdR"
                     /locus_tag="VE686_09585"
     CDS             complement(1086..1583)
                     /gene="nrdR"
                     /locus_tag="VE686_09585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009491100.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0140110 - transcription regulator activity
                     [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator NrdR"
                     /protein_id="HYY84734.1"
                     /translation="MRCPYCGSLDTQVKDSRPTDDSSAIRRRRVCPDCGGRFTTFERV
                     QLRELTVVKRSGRRVPFDRDKLERSVAVALRKRPVDAERVERMINGIVRQLESQGDSE
                     IASERVGELIMEGLKALDDVAYVRFASVYKNFREARDFEALLGSLAGDDAEPSPGRKK
                     ARGTP"
     gene            complement(1596..>2675)
                     /gene="glyA"
                     /locus_tag="VE686_09590"
     CDS             complement(1596..>2675)
                     /gene="glyA"
                     /locus_tag="VE686_09590"
                     /EC_number="2.1.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003601128.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004372 - glycine hydroxymethyltransferase
                     activity [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_function: GO:0070905 - serine binding [Evidence IEA];
                     GO_process: GO:0019264 - glycine biosynthetic process from
                     serine [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydroxymethyltransferase"
                     /protein_id="HYY84735.1"
                     /translation="RYYGGCQFVDIAEELAIERACRLFDCKFANVQANSGSQANQAVF
                     MALMKPGDTFMGLDLACGGHLTHGSPVNMSGKWFNVVSYNVRPDDQRVDMDQVERLAH
                     EHKPKVIVAGGSAYSRFWDFARFREICDAVGAIFMVDIAHFAGLVAGGAHPSPFPHAH
                     IVTTTTHKTLRGPRGGMILTNDEALAKKINSAIFPGLQGGPLMHVIAAKAVAFSEALR
                     PEFKLYARSVVENAKALADTIASAGFAIVAGGTDNHLMLVDLRPKKLTGKAAEAALGR
                     AHVTCNKNGVPFDTEKPMITSGIRLGTPACTTRGFGVAEFRRVGELLVEVLDGLARNG
                     EGDNAGVETAVRQRAHELTQRFPIY"
BASE COUNT          382 a          939 c          963 g          391 t
ORIGIN      
        1 ggcgagacgg aagcgcgacg cgagcgcccc ctcgaggttg gccccgagcg ccggcaggcc
       61 ggacccgcca aggctccttt gcgcggtcgc gagcacgacc tcgtcgatga ggccggccgc
      121 ggccagcgca tcggcgaggg ccggcccgcc ctcgcagaag acgcgggtga tgccgcgctg
      181 ggccaggtgt gcaagggcgg ccgcgagatc gacctcgccg tccccgcgca cccgcagcac
      241 ctcggcgccc cggtcggcga ggcgccgttc cgcctcgatc ggcgcgttgt cggccgtgac
      301 gatccaggtc gggttctcgc ccgcccccgc caccacggca gccgttaggg aggtccgcag
      361 cgcgctgtcc acgacgacgc gcaccggcga gcgctgttcg agaccgggca ggcggacgga
      421 cagcagcggg tcgtcggccg cgatggtccc cgcacccacc atgattgcat ctgcgtgcgc
      481 ccgcatcatg tgcacgcggg cgtttgccgc cggacccgtg atcatgaggc gcgggccggt
      541 cgcgctcgcc gcgaacccat ctgcggttcg cgcaagcttc agggtcacca tgggacggcc
      601 ccgtgtgacg cgcaggatgt ggccctggtt ggcgcgccgc gcctcgtcgg cgagcacacc
      661 ggtcacgacc tcgacgcccg cggctcgcaa agcggcatgc cccttgccgc tgacacgcgg
      721 atccggatcc tcgatcgagg tcacgacgcg ggccactccc ccggcgatga cggcgtcgac
      781 gcagggcggc gtcttgcccg tgtgggcgca gggctcgagc gatacgtaca gcgtcgcgcc
      841 gcgcgccgcg gcgccggcgg cgtcgagagc gatgcgttcc gcatgaggac gcccggccct
      901 ttgcgtgatg ccctgcgcga cgatgcgtgg cgccccgccg ctctcgtcga cgacgagcgc
      961 acccacagag gggttcggcc acgtcaggcc gacgtgtcgc tgcccgagcg ccagcgcgag
     1021 ccgcatcagc cgctcgtcat gcggccgcag cgcggaccct gacgcctggg cagcagcgcc
     1081 acgcgtcatg gcgttccgcg cgccttcttg cgacccggcg agggctcggc atcgtcgccc
     1141 gccaggctgc cgaggagcgc ctcgaagtcg cgggcctcgc ggaagttctt gtacacggag
     1201 gcgaagcgca cataggcgac atcgtcgagg gccttgaggc cttccatgat gagctcgccc
     1261 acgcgctcgc tcgcgatctc gctgtcgccc tggctctcga gctggcgcac gatgccgttg
     1321 atcatgcgct cgacccgctc cgcatcgacc ggacgcttgc gcagcgccac cgcgacggag
     1381 cgctcgagct tgtcgcggtc gaaagggacg cggcggccgg accgcttcac gaccgtaagc
     1441 tcgcgcagct gcacgcgctc gaaggtggta aagcggccgc cgcagtcggg gcagacgcgc
     1501 cggcggcgga tcgcggacga atcgtccgtc gggcgcgagt ccttcacctg cgtgtcgagg
     1561 ctgccgcaat agggacagcg catgaggtcc gccgctcagt agatcgggaa gcgttgcgtc
     1621 agctcgtgcg cgcgctgccg gaccgcggtc tcgacgcctg cgttgtcgcc ctcgccgttg
     1681 cgggcgagcc cgtcgagcac ctcgacgagg agctcgccga cgcggcggaa ctccgcgacg
     1741 ccgaaaccgc gggtcgtgca ggccggcgtg ccgaggcgga tgccggaggt gatcatcggc
     1801 ttctcggtgt cgaacggcac gccgttcttg ttgcaggtga cgtgcgcgcg cccgagggcg
     1861 gcctcggccg ccttgccggt gagcttcttc ggcctgagat ccacgagcat caggtggttg
     1921 tcggtgccgc ccgccacgat ggcgaagccc gccgacgcga tggtgtcggc gagcgccttg
     1981 gcgttctcga ccacgctgcg ggcgtagagc ttgaactccg gccgcagcgc ctcgctgaag
     2041 gcgaccgcct tagcggcgat cacgtgcatc aacggcccgc cctggaggcc ggggaagatc
     2101 gccgagttga tcttcttcgc caaggcttcg tcgttggtga ggatcatgcc gccgcgcggg
     2161 ccgcgcaggg tcttgtgcgt cgtcgtcgtg acaatgtggg cgtgcgggaa cggcgaggga
     2221 tgggcgccgc cggcgacgag accggcgaaa tgggcgatgt cgaccatgaa gatggccccg
     2281 accgcgtcgc agatctcgcg gaagcgcgcg aaatcccaaa accgcgaata ggccgagccc
     2341 ccggcaacga tcaccttcgg cttgtgctca tgggcgaggc gctcgacctg gtccatgtcg
     2401 acgcgctggt cgtcggggcg gacgttgtag ctcaccacgt tgaaccactt gcccgacatg
     2461 ttcaccggcg agccgtgggt caggtgcccg ccgcaggcga ggtcgaggcc catgaaggtg
     2521 tcgccgggct tcatcagcgc catgaacaca gcctggttgg cctggctgcc ggaattggcc
     2581 tgcacgttgg cgaacttgca atcgaacagc cggcaggcgc gctctatggc gagctcctcg
     2641 gcgatgtcga cgaactggca gccgccgtaa tagcg
//
LOCUS       DASQWN010000513         2752 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_440747, whole genome shotgun sequence.
ACCESSION   DASQWN010000513 DASQWN010000000
VERSION     DASQWN010000513.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2752)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2752)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2752
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_440747"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..829)
                     /locus_tag="VE686_09595"
     CDS             complement(<1..829)
                     /locus_tag="VE686_09595"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY84736.1"
                     /translation="MPSPLRPLLVLCVLATALTFAAPASALVVGIADNKPDMFADPRF
                     AATGIRTARLAVSWDALTSPWQTQQIDAWLGAARGAHVEPLVSFGHSAIDRRSLPTPE
                     RFLFEFRRFRARYPWVTTFATWNEANHCGEPTCHRARLVAAYYRALRRDCPTCRILAA
                     EVLDMPNMVTWVREFRRAARQEPRYWGLHNYIDANRRRTTGTKRMLRAVKGQVWFTET
                     GGIVRRTNRTKVTFPESARHAARATSFVFRRLLPLSRRATRVYIYHWNAISGPLTWDS
                     "
     gene            complement(1269..1733)
                     /locus_tag="VE686_09600"
     CDS             complement(1269..1733)
                     /locus_tag="VE686_09600"
                     /inference="COORDINATES: protein motif:HMM:NF024970.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HYY84737.1"
                     /translation="MRPHHDGPSESRQAVPGENGRAAGLVPFELDILATPTAAATARA
                     AVSAWIGHQVTEAVLVDLRLLVGELVANSVVHADVPRDSLVSIRVQLGADALHVEVAD
                     CGSGGTVALRTPDLANGGGFGLNVVDVVSRRWGVHRDAGTRVWAELAFPPTG"
     gene            2061..2471
                     /locus_tag="VE686_09605"
     CDS             2061..2471
                     /locus_tag="VE686_09605"
                     /inference="COORDINATES: protein motif:HMM:NF021568.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na-translocating system protein MpsC family
                     protein"
                     /protein_id="HYY84738.1"
                     /translation="MADPHEVPVPRPRVDGWLLQDVSNAMVALHKEQFGRGPTRAQSH
                     MAGADALLCVMDDALLPAEWAMVEMGEHQRVRESRTFFQVATAEQFVAAVERITGRTV
                     RAFASATDPAQGTVLETFVFEPEEDRGNAVASID"
     gene            complement(2504..>2752)
                     /locus_tag="VE686_09610"
     CDS             complement(2504..>2752)
                     /locus_tag="VE686_09610"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY84739.1"
                     /translation="PLDEMTASLARAGLVVTWQEDHTRAHRATAQALADAFAADAEHI
                     AAEIGRRALDELLAAHRLWVEWLDEGRVRKLAVVAERA"
BASE COUNT          382 a         1013 c          979 g          378 t
ORIGIN      
        1 ccgagtccca cgtcagcggc ccggagatcg cattccagtg gtagatgtag acgcgcgtcg
       61 cccgccggct gagcggcagg agccggcgga agacgaagct cgtcgcgcgg gccgcgtgcc
      121 gagccgactc cggaaacgtc accttggtgc ggttcgtgcg ccggacgatg ccgccggtct
      181 cggtgaacca cacctggccc ttgaccgccc gcagcatgcg tttggtgccc gtcgtccgcc
      241 ggcggttggc gtcgatgtag ttgtgaagcc cccagtaccg cggctcctgc cgcgccgcac
      301 gccggaactc gcggacccag gtgaccatgt tcggcatgtc gagcacctcg gccgccagga
      361 tccggcacgt cgggcagtcc cggcgcagcg cgcggtagta cgccgccacg aggcgcgccc
      421 gatgacacgt cggctcaccg cagtggttgg cctcgttcca ggtcgcgaac gtcgtcaccc
      481 acgggtaccg cgcccggaag cgccggaact cgaacaggaa ccgctccggc gtcggaaggc
      541 tccggcggtc gatcgccgag tggccgaacg agaccagcgg ctcgacatgg gcgcctcgcg
      601 cggcccccag ccacgcgtcg atctgctgcg tctgccacgg gctcgtcagc gcgtcccacg
      661 acacggccag ccgcgcggtc ctgatccccg tcgcggcgaa gcgggggtcg gcgaacatgt
      721 ccggcttgtt gtcggcgatc ccgaccacca gggcgctcgc cggagcggcg aacgtcaggg
      781 cggtggcgag gacgcagagg acgagcagcg ggcgtagcgg cgaaggcatc ggcatcctca
      841 agccacgcat cggcccgaag tcgcgccact ctagcgatgc caggcggcac tcgcggcgcc
      901 ggcggtcggg tgtcgatcca cggcctcgcc gtccccggga cagcgatccc tcgagcaggc
      961 cagaacgcgc cgatcgatgg gccgatggtc gaccgactcc ccgccccggg cctccgatcc
     1021 gacccgtccg cggcgtcagc tcgcttcgga ttcccgcgga tgcgcggcgc gcgcgacttc
     1081 ctcgtggctg cgcgcgagtc gggcttggaa gtccgccgcg cggcggtgcg agctgcgggc
     1141 gtactccgtg gtagcccggt tggccgcatc tcgggcggcc gcggctcgtt cgtgcgcctc
     1201 gtcggcccgc gcctgtgcgg cgagggctcg ctggcgcgcc tcatcccatt ctggatacgc
     1261 cacttgcctc accccgtcgg cggaaaggcg agctccgccc agacccgggt gcccgcgtct
     1321 cgatgcaccc cccaccgtcg ggagaccacg tcgacgacgt tgagaccgaa gccgccgccg
     1381 ttggccagat ctggcgtgcg cagggcgacc gtgccgccgc tgccgcagtc ggcgacctcg
     1441 acgtgcagcg catcggcccc gagctggacg cggatgctga cgagcgaatc gcgcggcacg
     1501 tcggcgtgga cgacgctgtt ggcgacgagc tcgccgacca gcaggcggag gtcgacgagc
     1561 acggcctcgg tcacctgatg gccgatccag gcgctcaccg cggcgcgcgc cgtcgccgcc
     1621 gcagtaggcg tggcgaggat gtccagctcg aacggaacga gtccggcggc gcgtccgttc
     1681 tcaccaggaa ccgcctgcct ggactcagat ggtccatcgt gatgcggtcg catgagcgac
     1741 ctccctggat cccatcgacc ggcccagcgt cacgcgcggc ccgcgatggt ctccattgtg
     1801 tccggaggac cgacgtccgc gcttctcgag atgccaccaa ggaccgatcg ggccgcgcgg
     1861 agaccgaggc tccctcagcc gggagtctac ccaccgccgc gcgatgccac gagtgaacga
     1921 gattaattgg agcggaatgg gccgaccggc ccctgcgccg gcgccggggc ggtagactcg
     1981 gtcggcagtc tccgcttgcg ggtcctcctt cctccaccct ttgcggccca cgccctcgga
     2041 ggaggagaag ggcggcactg atggccgacc cccacgaagt tcccgtgccg cgcccgcggg
     2101 ttgacggatg gctgctccag gacgtctcca acgcgatggt cgcgctgcac aaggagcagt
     2161 tcggccgcgg gccgaccagg gcgcagtcgc acatggcggg cgccgacgcg ctgctgtgcg
     2221 tgatggacga cgcgctgctg ccggccgagt gggcgatggt cgagatgggc gagcaccagc
     2281 gcgtccggga gtcgcgaacg ttcttccagg tcgcgactgc cgagcagttc gtcgcggcgg
     2341 tggagcgcat cacggggcgc accgtccgcg cgttcgcgag cgcgaccgac ccggctcagg
     2401 gcaccgtcct cgagaccttc gtcttcgagc ccgaggagga tcgcggcaac gccgtcgcgt
     2461 ccatcgactg acgcgtagcg gcgacggagg cgcgcttctc gtcctaggcc cgctccgcca
     2521 ccaccgcgag cttccgcacc cgcccctcgt ccagccactc gacccacaac cggtgggcgg
     2581 cgagcagctc gtccagcgcc cggcggccga tctccgcggc gatgtgctcg gcgtccgcgg
     2641 cgaacgcgtc cgccagcgcc tgcgccgtcg cgcggtgcgc gcgggtgtgg tcctcctgcc
     2701 acgtgacgac caggccggcg cgcgccaggg acgcggtcat ctcgtcgagc gg
//
LOCUS       DASQWN010000514         2338 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_540058, whole genome shotgun sequence.
ACCESSION   DASQWN010000514 DASQWN010000000
VERSION     DASQWN010000514.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2338)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2338)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2338
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_540058"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..901
                     /locus_tag="VE686_09615"
     CDS             <1..901
                     /locus_tag="VE686_09615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007560778.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="heme biosynthesis protein HemY"
                     /protein_id="HYY84740.1"
                     /translation="AALAGSLLARRGDLRRAAKVVEGAWKVQPHPDLAAVYLNLRPGD
                     SAQDRLHRAETLAKLSSWHPEARIALARAALDAREFPRARAALSPLLHERPTVRVCLL
                     MADLEEAENGASGRTREWIARASRAPRDPAWIADGVVSDRWAPMSPVTGRLDAFVWQA
                     PPDVLAAPDSPMDDVVGDLDEEGATAPALAAPEPAREPVAEQPRSSEPPPAASPPAAA
                     PDAAVVAVPVAASLSTVEPPHPATAPTDADPAHTAEPSTAKPNGAHAPAPEPVTFPVE
                     HAPDDPGPDKDDEEKRPRFRLFG"
     gene            974..1049
                     /locus_tag="VE686_09620"
     tRNA            974..1049
                     /locus_tag="VE686_09620"
                     /product="tRNA-Thr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1007..1009,aa:Thr,seq:cgt)
     gene            1198..1893
                     /locus_tag="VE686_09625"
     CDS             1198..1893
                     /locus_tag="VE686_09625"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY84741.1"
                     /translation="MRKPVSERIGELRDKVEYRRAATEQDHEAIFRLRYDACRRIAAI
                     DPCDGQRFDDKFDWLPNVHQLGVYIEDRLAASLRIHVLSQETPWSPALDNFPDVLEPE
                     LASNKRIVDPNRLMSDFDASRRYPELPYVTLRLAYMAAVHFEADLVTASVRREHEAFY
                     RREMLMRPACPPRPYGTVSKLIGLMVIDFPRDGHAIVERRPFYKSQAEEREHLFGPSR
                     ASGTSSKGARTAA"
     gene            complement(1868..>2338)
                     /locus_tag="VE686_09630"
     CDS             complement(1868..>2338)
                     /locus_tag="VE686_09630"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY84742.1"
                     /translation="NRHGDRPGGASPRDTDRLVVERALTMATVRCCAPGCSTAVDGSP
                     DWQEALCGEHLDLASRAARRRFSHRHGRRLRLETLRSDERYFEAAFASDRHLKLCAVI
                     DHASEMAEAAWLRVKLDVLLHMARQAGKPPVVQAWTAPAAATEERPFTRRFSRP"
BASE COUNT          333 a          858 c          800 g          347 t
ORIGIN      
        1 ggcggcgctg gcgggctcgc tgctggcgcg ccgcggcgat ctgcgccggg ccgccaaggt
       61 ggtggaaggg gcctggaagg tgcagccgca cccggacctc gccgccgtct acctgaacct
      121 gcgcccgggc gactccgcgc aggaccgctt gcaccgtgcc gagacgctcg ccaagctgtc
      181 gtcctggcat cccgaggccc gtatcgcgct cgcccgcgcg gcgctcgatg cccgcgagtt
      241 cccacgggcc cgcgcggcgc tctcgcctct gcttcacgag cgcccgacgg tccgcgtgtg
      301 cctgctcatg gccgacctcg aggaggccga gaacggagcc agcggccgca cccgcgagtg
      361 gatcgcccgc gcctcccgcg cgccccgcga cccggcctgg atcgccgacg gcgtggtctc
      421 ggaccgctgg gcgcccatgt cgcccgtgac gggccgtctc gacgcttttg tgtggcaggc
      481 gcctcccgac gtgctggccg cgcccgacag cccgatggac gacgtcgtcg gcgacctcga
      541 cgaggagggc gcgaccgcgc ccgcgcttgc tgctcccgag ccggcgcgcg agcccgtggc
      601 agagcagccg cgttcctccg agccgccgcc cgccgcctcg ccaccggcgg cagctccgga
      661 cgccgccgtc gtcgccgtgc cggtcgcggc ctcgttgtcg acagtcgagc cgccccatcc
      721 cgcgaccgcg ccgaccgacg ccgaccctgc ccacactgct gagccctcaa cggcgaagcc
      781 gaacggcgcg catgcgcccg cgcccgagcc ggtgacgttc ccggtcgagc acgcgccgga
      841 cgacccgggt cccgacaagg acgacgagga gaagcggcct cgcttccgcc tcttcgggtg
      901 aggcgcggcg ccgccttgcc ggccgcgccg tttcgcctta tgaccacccg gcctcatcga
      961 ggcccaccgg tcagccgcaa tagctcagtt ggtagagcac ctcattcgta atgagggggt
     1021 cgggagttcg agcctctctt gcggcaccat ctttcggtag cttgactgcc gtcgcctccc
     1081 gcgatgtccg atcgccccgc tggcgtgcgg ggcagcccaa ctagaaggca cgtgcgcgcg
     1141 gccatcgtta atgcaatcct acctctaatg ggggagggaa ggacggtggc agagggcttg
     1201 cgcaaaccgg tttcggagcg gatcggcgaa ctccgagaca aggtcgagta tcgccgggcc
     1261 gcgacggagc aggatcatga ggcgatcttc cggctcaggt acgatgcatg ccgtcggatc
     1321 gccgcgatcg acccgtgcga cgggcagcgc ttcgacgaca agttcgattg gctccccaac
     1381 gtgcaccagc tcggcgtgta catcgaggac cggctcgcgg cttcgctccg catccacgtg
     1441 ctgtcgcaag agacgccctg gtcgccggcg ctggacaact tcccggacgt gctcgagccc
     1501 gagctcgcca gcaacaagcg catcgtcgat ccgaaccgct tgatgtcgga cttcgatgcg
     1561 tctcgccgct atccagagct gccctacgtg acgctccgcc tcgcctacat ggctgccgtc
     1621 cacttcgagg ccgatctggt gacggcgtcg gtgcgacgcg agcacgaggc gttctaccgg
     1681 cgggagatgc tgatgaggcc ggcgtgtccg ccccgtcctt acggcaccgt gagcaagctc
     1741 atcgggctca tggtgatcga cttccctcgc gacggccacg ccatcgtgga gcggcggccg
     1801 ttctacaagt cgcaggccga ggagcgcgag cacctcttcg ggccctcgcg cgcaagcggc
     1861 acctcgtcta agggcgcgag aaccgccgcg tgaacgggcg ctcctccgtg gcggcagcgg
     1921 gggccgtcca cgcctgaacg acgggcggct tgcccgcttg tcgtgccatg tgcaggagca
     1981 cgtccagctt gacgcgcagc caggcggcct ccgccatctc gctggcgtgg tcgatgaccg
     2041 cgcacagctt cagatggcgg tcggatgcga aagcggcttc gaagtagcgc tcgtcgctgc
     2101 gcagcgtctc gagccggagc cgccttccat gtcgatggct gaagcgtcga cgggctgcac
     2161 gcgaggcgag atcgagatgc tccccgcaca gggcctcctg ccaatccggg cttccatcga
     2221 ccgccgtcga acagccgggc gcgcaacagc ggacggtagc catggtcaat gcacgctcga
     2281 cgacgaggcg gtccgtgtcg cggggcgaag cgcctcccgg gcggtcgcca tggcggtt
//
LOCUS       DASQWN010000515         2800 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_787472, whole genome shotgun sequence.
ACCESSION   DASQWN010000515 DASQWN010000000
VERSION     DASQWN010000515.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2800)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2800)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2800
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_787472"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1002)
                     /locus_tag="VE686_09635"
     CDS             complement(<1..1002)
                     /locus_tag="VE686_09635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009764221.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AMP-binding protein"
                     /protein_id="HYY84743.1"
                     /translation="MPYTAHLDTFARDSLPPKEQWPDLLFRLPELQYPEQLNCAAALL
                     DRWVEEGRGDAPAIFSAAERLTYRALQERVNRIANVLVRDLGLVPGNRVLLRSANNPM
                     MVAAYLAVLKAGGVVVATMPLLRAREIAYPLRKAKVQFALCDHRLADDMEKARPLAPD
                     FLRVVYWGAGDADSLETLMARASPQFSTVQTAADDVCLIAFTSGTTGEPKGTMHFHRD
                     MLAVCDTYGAHVLRPGPDDRFIASPPIAFTYGLGGIVLFPFRVGASTILIEKAAPDDL
                     LAAIAEHRATTCFTAPTAYRAMLAKLDAHDVSSLRACVSAGEALPKATFDAWHEATGV
                     "
     gene            complement(1005..2171)
                     /locus_tag="VE686_09640"
     CDS             complement(1005..2171)
                     /locus_tag="VE686_09640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006339457.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016627 - oxidoreductase activity, acting
                     on the CH-CH group of donors [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase family protein"
                     /protein_id="HYY84744.1"
                     /translation="MPDLSFLSWPFFDARHGAFADGLRAWAEREVEPLVDHHDVDGSC
                     RRLVAALGRGGWLRAAVPEAYGGLYPTFDVRTLCLARETLAYHAGLADFAFAMQGLGS
                     GPITLYGSEEVKQRYLPAVAAGDAIAAFALSEPEAGSDVAALATTATPDGPAHVRLDG
                     AKTWISNGGIADFYVVFARTGETPGARGLSAFVVDAQTPGLTVTERIEVIAPHPLATL
                     EFDGCRVPLGNSIGAPGDGFKVAMATLDVFRSTVGAAALGLARRALDEALNRARARTL
                     FGAPLGDLQMTQGALADMATAVDASALLVYRAAWTKDQGAERITREAAMAKLHATEAA
                     QGVIDKAVQIFGGLGVTRGVKVEELYREIRALRIYEGATEVQKVVIARDLMKGL"
     gene            complement(2395..>2800)
                     /locus_tag="VE686_09645"
     CDS             complement(2395..>2800)
                     /locus_tag="VE686_09645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011088822.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="enoyl-CoA hydratase-related protein"
                     /protein_id="HYY84745.1"
                     /translation="RASELLYTGRFMSAEEGERWGFFSRLVGQGRASELLYTGRFLSG
                     EEGAAWGFFNRLCAPESVLAEAQALARDMAAGPTFANAMTKRMLAMEWAMSVEEAIEA
                     EAVAQALCMTTEDFARAYRAFAAKEKPVFRGD"
BASE COUNT          437 a          968 c         1022 g          373 t
ORIGIN      
        1 gacgccggtc gcctcgtgcc acgcgtcgaa ggtggccttc ggcagcgcct cgcccgccga
       61 cacgcaggcg cgcagtgacg acacgtcatg cgcatcgagc ttcgccagca tggcgcgata
      121 ggccgtggga gcggtgaaac aggtcgtcgc gcggtgctcg gcgatcgccg ccagcaagtc
      181 gtcgggcgcg gccttctcga tcaggatcgt cgacgcgccg acgcggaacg ggaacagcac
      241 gatcccgccg agcccatacg tgaaggcgat cgggggcgag gcgatgaagc ggtcgtccgg
      301 gcccggccgc agcacatgcg cgccgtaggt gtcgcagacg gcgagcatgt cgcggtggaa
      361 gtgcatggtg cccttcggct cgcctgtcgt gccggaggtg aaggcgatga gacacacgtc
      421 gtcggcggcg gtctgcacgg tgctgaactg cggcgaagcc cgggccatga gggtttcgag
      481 cgaatccgcg tcgccggcgc cccagtagac cacccggagg aaatccggcg cgaggggcct
      541 tgccttctcc atgtcgtcgg ctaggcgatg gtcgcaaagc gcgaactgga ccttcgcctt
      601 gcgcagcggg taggcgatct cgcgcgcccg caggagcggc atggttgcga caacgacgcc
      661 gccggccttg aggacggcca ggtacgccgc aaccatcatg gggttgttgg ccgagcgcag
      721 aagcacgcgg ttgcccggca cgaggccgag atcgcgcacg agcacgttgg cgatccggtt
      781 cacccgctcc tgcagcgcgc gataggtgag gcgctcggcg gcgctgaaga tggccggagc
      841 gtcgccgcgc ccctcctcga cccagcggtc gaggagcgcg gcggcacagt tcagctgctc
      901 cggatactgc aactccggca gccgaaacag gaggtccggc cactgctcct tgggcggcag
      961 gctgtcccgc gcaaaagtat cgaggtgggc ggtgtagggc atggtcagag ccccttcatg
     1021 agatcgcggg cgatgacgac cttctgcacc tcggtcgcgc cctcgtagat gcgcagggcg
     1081 cggatctcgc ggtacagctc ctcgaccttg acgccgcggg taacgcccag gccgccgaag
     1141 atctgcacgg ccttgtcgat caccccctgc gccgcctcgg tcgcatgcag cttcgccatc
     1201 gcagcttcgc gggtgatgcg ctctgcgccc tggtccttgg tccaggccgc ccggtagacg
     1261 aggagcgccg aggcgtccac cgcggttgcc atgtcggcga gcgcgccttg cgtcatctgg
     1321 agatcgccca agggagcgcc gaagagggtg cgcgcgcggg cccggttgag agcctcgtcg
     1381 agagcccggc gcgcgaggcc gagcgccgcg gcgcccacgg tcgagcggaa cacgtcgagg
     1441 gtcgccatgg cgaccttgaa gccatccccg ggcgcgccga tgctgttgcc cagcggcacg
     1501 cggcagccgt cgaactccag cgtggcgagc ggatgggggg caatgacctc gatgcgctcg
     1561 gtgaccgtga ggcccggagt ctgcgcatcg accacgaagg ccgagagccc gcgcgcgccc
     1621 ggcgtctcgc cggtgcgggc gaagacgacg tagaaatcgg cgatgccgcc gttcgaaatc
     1681 caggtttttg cgccgtcgag gcgcacgtgg gccgggccgt cgggcgtcgc cgtcgtcgcg
     1741 agggccgcga cgtccgaccc ggcctccggc tcagagagcg caaaggcggc gatcgcgtcg
     1801 cctgcggcca cggcgggcag gtagcgctgc ttcacttcct ccgagccgta cagcgtgatc
     1861 gggccggagc cgaggccctg catggcgaac gcgaagtcgg caaggccggc gtgataggcg
     1921 agcgtctcgc gcgcaaggca tagggtgcgc acgtcgaagg tcggatagag cccgccgtag
     1981 gcctccggca cggcagcccg cagccacccc ccgcggccga gcgcagccac aagccgccgg
     2041 cacgagccgt cgacatcatg atggtcgacg agcggctcca cctcgcgctc cgcccaggcg
     2101 cgcaagccgt ccgcgaaggc gccatgccgg gcgtcgaaga acggccagga gaggaaggac
     2161 aggtcaggca tccaccacct cccccgtcct tcgagggcgc catccctccc cgcgagggga
     2221 gggcggagac gggaccgtca gggcccgccc gggtggggcg gaagcgcggt ccggaacggt
     2281 gagcacggtg gcgccgcccc accccgctcg cgcctgtagg cgcgagtcgc cctcccctcg
     2341 cggggaggaa tgaccccgcg aacgtgcggc gggaggcgcg tctcgcgaca tccctcaatc
     2401 tccccggaac acgggctttt ccttcgccgc gaaggcgcgg taggcgcggg cgaagtcttc
     2461 cgtcgtcatg cacagggcct gggcgacggc ctcggcctcg atggcttcct cgaccgacat
     2521 ggcccattcc atggcgagca tgcgcttcgt catcgcgttg gcgaaggtcg gccccgcggc
     2581 catgtcgcgc gcgagcgcct gggcctcggc gagcaccgac tcgggggcgc agaggcggtt
     2641 gaaaaagccc caggccgcgc cttcctcgcc cgagaggaag cggccggtgt aaaggagctc
     2701 ggacgccctc ccctgcccga cgaggcggct gaagaatccc cagcgctcgc cctcctcggc
     2761 gctcatgaag cggccggtat agagcagctc cgaggcacgg
//
LOCUS       DASQWN010000516         2722 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1182791, whole genome shotgun sequence.
ACCESSION   DASQWN010000516 DASQWN010000000
VERSION     DASQWN010000516.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2722)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2722)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2722
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1182791"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..318
                     /locus_tag="VE686_09650"
     CDS             <1..318
                     /locus_tag="VE686_09650"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY84746.1"
                     /translation="QAFADRPNLHGVVDSAAGGVEQLADRIRDRSVAEIFSDLEDIMR
                     QRPMTVAVATLAAGFFAARFVKASAEGMRENARQHRQTPRLGTQAQSRTPAPSGGMQA
                     AGG"
     gene            332..724
                     /locus_tag="VE686_09655"
     CDS             332..724
                     /locus_tag="VE686_09655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015933843.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phage holin family protein"
                     /protein_id="HYY84747.1"
                     /translation="MADNPHALQNLLAATLRDAADLARKEFALLKAEMAANVRTLGMA
                     IGMMIGAAVLAILSLIWLTQALVEWLATVVDSQSLAALIVGGVLAAAAVGLGLYGRSI
                     LSASTLTPDRSIESLRRDSEVLSESVSR"
     gene            784..1026
                     /locus_tag="VE686_09660"
     CDS             784..1026
                     /locus_tag="VE686_09660"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY84748.1"
                     /translation="MSGLAAEALGFVRRNPGQVAAWALALGFAVAGARRRRVRHRLPD
                     IPVMNTGHARLYDPDEKTRHTPHGGFDTRRDFPIRA"
     gene            1058..1840
                     /locus_tag="VE686_09665"
     CDS             1058..1840
                     /locus_tag="VE686_09665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012453597.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY84749.1"
                     /translation="MVANNNSSSGSGAKPQGSGSDTVSAANISAGTSTGNAGQPQPGS
                     SQSATLASHTSSPMGGTQGTGAGPEHLRHQDKDAGKGMGRTTSGGTGASSGSQGGSMS
                     DMTDRAGQMAGEAYDQASGMARDAYEQASSMASDAYDRGSRYYDEAAQRSLEGFGQAR
                     RGVERFVAENPMMVGVIGLAAGLVIGALLPRTRQEDRTLGRWADEVREQGMRYARDMA
                     HRGREMIDETFSGDDDRDDWRGQGGRGGQGGQRSQGGRYQPH"
     gene            2095..2445
                     /locus_tag="VE686_09670"
     CDS             2095..2445
                     /locus_tag="VE686_09670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020177525.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HYY84750.1"
                     /translation="MPVRILILEDDPFIALDLAAIVEEQGHEVLGSFASVASAAQHLD
                     DPVDFALLDIDVADGKSFGLAAALRRRDVPFAFVSGSRRSEIPAYLADALLIPKPYWH
                     AAIVQSLPRERRAA"
     gene            2508..>2722
                     /locus_tag="VE686_09675"
     CDS             2508..>2722
                     /locus_tag="VE686_09675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007569413.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxyltransferase domain-containing protein"
                     /protein_id="HYY84751.1"
                     /translation="MSSPRILACGDAALTVEFGSTIDPRLNARVLALDARLAAGVPGV
                     VETVPTYRSLLVHYDPLATDFDRLSEA"
BASE COUNT          418 a          999 c          914 g          391 t
ORIGIN      
        1 caagccttcg ccgatcgccc gaaccttcac ggcgtcgtgg acagtgccgc cggcggggtc
       61 gagcagcttg ccgatcggat ccgcgaccgt agcgtcgccg agatcttcag cgatcttgag
      121 gacatcatgc gccagcgccc gatgaccgtc gctgttgcga cgctcgcggc cggcttcttc
      181 gccgcccgct tcgtcaaggc ctcggcggaa ggaatgcgcg agaacgctcg tcagcaccgg
      241 caaacgccgc gcctcggcac ccaggcgcag agccgcacgc ccgcgccgtc cggcggcatg
      301 caggcggcgg gcgggtaggc ggaggtcccc catggccgac aatccacacg cgctgcagaa
      361 cctccttgcc gcgaccctgc gggacgcggc cgatctcgcc cgcaaggagt tcgcgctcct
      421 gaaagccgag atggccgcga acgtgcggac gctcgggatg gctatcggga tgatgatcgg
      481 cgcagcggtg ctggccatcc tctcgctgat ctggctcacg caggcgctcg tcgagtggct
      541 ggcgacggtg gtcgactcgc agtctctcgc ggccctcatc gtgggcggcg tgctggcagc
      601 ggcagctgtc ggcctcgggc tttacggccg cagcatcctc tcggcctcaa ccttgacccc
      661 cgaccgaagc atcgaatcgc tccgccggga cagcgaggtt ctgtcggaga gcgtctcgcg
      721 atgagccgcg gcgggcgggg ctcgcgcgct cccgtcgcag cccgcggcgg cgcggatcga
      781 gttttgtccg gcctcgccgc cgaggctctc ggcttcgtac gccgcaaccc aggacaggtc
      841 gccgcctggg cactcgcact cggcttcgcc gtcgccggcg cgcggcgccg tcgcgtgcgt
      901 caccgcctac cggacatccc ggtcatgaac accggtcacg cacgcctcta cgaccctgac
      961 gagaagacgc gccatacccc gcacggcggt ttcgacaccc ggcgcgactt ccccatcagg
     1021 gcctgacgaa caacctcagg gaaagggaga taagatcatg gtcgcgaaca ataattcatc
     1081 atcaggttcg ggcgcgaagc cgcagggaag cggctccgac acggtctccg ccgcgaacat
     1141 ctcggccggc acctccaccg gcaacgcagg ccagcctcag cccggctcgt cgcagagcgc
     1201 gacgctcgcc tcgcacacct cgagcccgat gggcggcacc cagggcactg gagccggacc
     1261 cgagcacctg cgccaccagg acaaggacgc cggcaaaggc atggggcgca cgacctccgg
     1321 cggcaccggc gcctcgagcg gctcgcaagg cgggagcatg tcggacatga ccgaccgcgc
     1381 cggccagatg gccggcgagg cctacgacca ggcctccggc atggcgcgcg acgcctacga
     1441 gcaggcgtcc tcgatggcat ccgacgccta cgaccgcggc tcgcgctatt acgacgaagc
     1501 tgcccagcgc tcgctcgagg gcttcgggca ggcgcgccgg ggcgtggagc gcttcgtcgc
     1561 cgaaaacccg atgatggtcg gcgtgatcgg gctcgccgcc ggcctcgtca tcggcgccct
     1621 tctgccgcgc acgcgccagg aggaccggac gcttggacgc tgggccgacg aggtccgcga
     1681 acagggcatg cgctacgccc gcgacatggc ccaccgcggc cgcgagatga tcgacgagac
     1741 cttcagcggc gatgacgatc gcgacgactg gcgcgggcaa ggcggacggg gcgggcaggg
     1801 aggccagcgc tcgcaaggcg gtcgctacca gcctcactaa ccggcctcgc cgacaccgac
     1861 agcgccggcc cccaggggcc ggcgttttca tttccggagc gacggcaatg gtccagcgtc
     1921 aaccgctgcc cgagggagcg cctgaccaac gctaacggat gcttaaccgt gctccgcgcg
     1981 atttgcctca aatgcccgct tgatccggaa cggcggggtc gccgcgccgg ttttccaggc
     2041 atgtgatccg gcggccttgc acgacaggcg gcgcgggcag cggaggaggg ggcagtgccg
     2101 gtgcgtatcc tcattctgga ggacgatccc ttcatcgccc tcgacctcgc ggcgatcgtc
     2161 gaggagcagg gtcacgaggt cctcggaagc ttcgcgtccg tggcctccgc ggcgcagcac
     2221 ctggacgacc cggtcgactt cgccctcctt gatatcgacg tcgccgacgg gaagagcttc
     2281 ggtctcgccg ccgcactaag acggcgcgat gtccctttcg ccttcgtttc cgggtcgcgc
     2341 cggagcgaga ttccggccta tctcgccgac gcgctcctca tcccgaagcc gtattggcac
     2401 gcggcgatcg tgcagtcgct tccacgcgag cgccgcgccg cctgaccgag cacagactgc
     2461 cgctgccccg cggctcgtgg taggtggttg ccgccggtcg accactcatg agctccccca
     2521 gaatcctcgc ctgcggcgat gccgcgctga ccgtcgagtt cggctcgacc atcgacccgc
     2581 gcctgaatgc gcgcgtgctg gcgctcgacg cccgcctcgc agcaggcgtg ccgggggtgg
     2641 tcgagacggt gcccacctac cgctcgctcc tcgtccacta cgatccgctc gccaccgact
     2701 tcgaccggct gtccgaggcg at
//
LOCUS       DASQWN010000517         2034 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_787922, whole genome shotgun sequence.
ACCESSION   DASQWN010000517 DASQWN010000000
VERSION     DASQWN010000517.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2034)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2034)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2034
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_787922"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..354)
                     /locus_tag="VE686_09680"
     CDS             complement(<1..354)
                     /locus_tag="VE686_09680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015314561.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SRPBCC domain-containing protein"
                     /protein_id="HYY84752.1"
                     /translation="MDASKESDPASGKNPTTVERKSERELVVTRTVNSPARIVFEAWT
                     KPELLRRWWAPKSFGLSIVSCEADVRVGGRYRLVFGHDPSNPDEFFGRYLEVTPHSRL
                     GWTNDEGGADGPITTV"
     gene            complement(332..697)
                     /locus_tag="VE686_09685"
     CDS             complement(332..697)
                     /locus_tag="VE686_09685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009735793.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metalloregulator ArsR/SmtB family transcription
                     factor"
                     /protein_id="HYY84753.1"
                     /translation="MVQCLTARLDISFAALSDPTRRGVLEQLGRADTSITDLAEKFHM
                     TLTGMKKHVGILEQAGLVSTEKVGRVRTCKLGPRRLADEAAWIEEYHRLWASRFNELD
                     KVVEELKQQEKVNGRKQRE"
     gene            complement(1193..>2034)
                     /locus_tag="VE686_09690"
     CDS             complement(1193..>2034)
                     /locus_tag="VE686_09690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010914044.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA];
                     GO_process: GO:0006313 - DNA transposition [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HYY84754.1"
                     /translation="LLFRAASETMLTIAADPKHLGARIGITAVLHTWGSALTHHPHVH
                     MIVPGGGIALDGSRWISSRPAFLLPVQVLGKLLRRLFLTRLIALHDAGQLAFFGTMAH
                     LADRRAFLRHLAPVRKKHWVVYAKPPFAGPEAVLASLSRYTHRVAISNRRLIAFDEAG
                     VTFRYKDYHRDGADRHQVMTLAADEFIRRFLLHVLPRGFHRIRHYGLLAGSTRRTHLA
                     LARELMAVAAPPDDDGGQEPVDARPPCPCCGGHMVIVETFERWRQPRAPPDHATATGT
                     ADP"
BASE COUNT          329 a          637 c          722 g          346 t
ORIGIN      
        1 caccgtggtg atgggcccat cggcaccgcc ttcgtcattg gtccagccga ggcgcgagtg
       61 cggagtcact tcgaggtacc tgccgaagaa ctcgtcaggg tttgagggat cgtggccgaa
      121 caccaaacgg tacctgcctc ccacacgaac gtcggcctcg caggagacga tcgacaggcc
      181 gaacgacttc ggcgcccacc atcgcctcag cagctcgggc ttggtccacg cctcgaacac
      241 gatgcgcgcc gggctattga cggtgcgggt aacgacgagc tcccgttctg atttccgttc
      301 caccgttgtg gggttcttcc ccgaggcggg atcactctct ttgcttgcgt ccattgacct
      361 tctcttgctg tttgagttcc tcgacaacct tgtccaactc gttgaaacgt gaggcccaga
      421 gccggtggta ctcctcgatc catgccgcct cgtccgccag tcggcgcggg ccgagcttgc
      481 aggtccgcac gcgaccgacc ttctccgtgc tgacgagccc ggcctgctct aagatgccga
      541 cgtgcttctt catgcccgtg agggtcatgt ggaacttctc ggcaagatcc gtgatcgaag
      601 tgtctgcacg tccgagctgc tccagaacgc cgcgtcgggt cggatccgag agcgcggcaa
      661 aggagatatc gagacgggcc gttaaacact gaaccatacg gttcagtgtt taacgcacgg
      721 atctgcgaca ggcaagcgga gaccgagcgc gccctgcgtg cccgccgctc tcgttcccaa
      781 gtagacctcg tttcgatgca gcttcatcga cttggtggtc cccaggccct tagtccgagc
      841 gggctgagcg tccgctatct tcgtagcgaa cccagaagcc gccagcctgc tttcgtgaag
      901 ggtttcgggc gccggcaggc gtacgaaagt cgccgaggaa cgaacccgcg ggtcacgggg
      961 ctgggttatg gggatttcga ttttcgaccg gtgtcggctg tgtcgtcgcg accggtggcg
     1021 agcgcggagc gtgatgcgga cggaccgcat cgtcgcctga tccggccggt cccaacggcg
     1081 ggttgatcac cgcgaccggt ccgtgaagca ctgcaggcgc cggcgggtgc gagcctgggt
     1141 gttggccgca gcagcgctgc ggcggcgggg gagcatggcg gcccgtgccg ggtcacggat
     1201 cggcggtccc ggttgcggtg gcgtggtccg gtggcgcccg tggctggcgc catcgctcga
     1261 acgtctcgac gatgaccata tggccgccgc agcacgggca cggcggccgt gcatcgaccg
     1321 gctcttgccc gccatcgtca tcgggcggcg cagcgaccgc catcagctcg cgggcgagcg
     1381 cgagatgggt cctgcgggtg gagccggcga gcaggccata atgccggatg cggtggaacc
     1441 cgcgtggtag gacgtggagc aggaagcggc ggatgaactc gtcggcggcg agggtcatga
     1501 cctggtgccg atcggcgccg tcgcgatggt agtccttgta gcggaacgtg acgccggcct
     1561 cgtcaaaggc gatgagccgc ctgttcgaga tggcgacgcg atgcgtgtag cgagagagag
     1621 aggcgagcac ggcctccggg ccggcgaacg gcggcttggc gtagacgacc caatgcttct
     1681 tccggaccgg cgccaggtgg cgcaggaagg ctcgccggtc ggcaaggtgc gccattgtcc
     1741 cgaagaaggc gagctggcca gcgtcgtgga gcgcgatcag ccgggtgagg aacaggcggc
     1801 ggagcagctt gcccagcacc tgcaccggca ggaggaaggc gggccgcgac gatatccagc
     1861 ggctcccgtc gagcgcgatg ccgccgcccg gtacgatcat gtggacgtgg ggatggtgcg
     1921 tcagcgccga gccccaggtg tggagcacgg cggtgatgcc gatccgagcg cccagatgct
     1981 tcgggtcggc cgcgatcgtc agcatcgtct ccgacgcggc ccggaacagc aggt
//
LOCUS       DASQWN010000518         2769 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1482284, whole genome shotgun sequence.
ACCESSION   DASQWN010000518 DASQWN010000000
VERSION     DASQWN010000518.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2769)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2769)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2769
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1482284"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..363
                     /locus_tag="VE686_09695"
     CDS             <1..363
                     /locus_tag="VE686_09695"
                     /inference="COORDINATES: protein motif:HMM:NF013786.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0008897 - holo-[acyl-carrier-protein]
                     synthase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="4'-phosphopantetheinyl transferase superfamily
                     protein"
                     /protein_id="HYY84755.1"
                     /translation="EATADMLDVAAQFFSASEAEALRALPPERQPERFFSIWTLKEAY
                     VKARGLGIAAVPLQDFSFALAADGCIGLSLAPSLGDEPAGWRFASVKVSADHLLAVAV
                     RLPAAARLRLRVGVWAPE"
     gene            452..1144
                     /locus_tag="VE686_09700"
     CDS             452..1144
                     /locus_tag="VE686_09700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015687941.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_process: GO:0006749 - glutathione metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione S-transferase N-terminal
                     domain-containing protein"
                     /protein_id="HYY84756.1"
                     /translation="MIKYYFNLSPNPMKVALFLEEAGVPYEAVPVDTRRGQQFDPAYL
                     AINPNGKVPAIVDGDATVFDSNAILLYLAEKTGRFLPPNTPGARGELLSWLMFVASGI
                     GPFSGQAVHFKHFAPERVPYADTRYQFEARRHYGIVEQRLATRPYMLGETYTIVDMAL
                     WGWARMVPFMMGEGAWADFPNLNRLHDEIAARPAAARVNALREKHAGAFKAEMDDEAR
                     RHMFPHLGQRAA"
     gene            complement(1164..2012)
                     /locus_tag="VE686_09705"
     CDS             complement(1164..2012)
                     /locus_tag="VE686_09705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018098832.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phytanoyl-CoA dioxygenase family protein"
                     /protein_id="HYY84757.1"
                     /translation="MTASALRTETHDPGLDLSADVDTLYRDGIVGRRGAFSREWAEAM
                     REDMTTAFWEAIQRPGGAVGRGPRRWYVEIHPQAFGGFVDLVTHPWIAGMAEAVCGPD
                     YQIVEIGFDTPFQGAKRQPWHRDFPSPRESYEERRITSLAFNLTGVDVTPDMGPFEIA
                     PGTQWDDGREWKHEMFPPQELWPRFEERAVKKYPQMGDVSCRSALTVHRGTPHPSPIA
                     RPVLVLGVDAPGAGHAELHDLMVTQDYYDALPQSVRDHLVCRVVDKLVPVTQKHDIEG
                     LVMGAE"
     gene            complement(2109..>2769)
                     /locus_tag="VE686_09710"
     CDS             complement(2109..>2769)
                     /locus_tag="VE686_09710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012318804.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="fatty acid--CoA ligase family protein"
                     /protein_id="HYY84758.1"
                     /translation="ELVRRMREVFPNSVPATGWGMTETSATFTHHQGEDYQHRPDSCG
                     PPLPVCEMQIRDGDGRVLPPNTVGELWVKGPNVVKGYWNKPEATAEAFVGGWLRTGDV
                     ARLDEEGFCYIVDRAKDMLIRGGENIYCIEVEDALYEHPAVMDVALVGIPHRTLGEEP
                     AAVVCLCPGATATEEELRAYVSERLAAFKVPVRVLFQTEPLPRNPNGKIMKGELKKLF
                     A"
BASE COUNT          394 a          949 c          982 g          444 t
ORIGIN      
        1 gaagccaccg ccgacatgct cgacgtcgcg gcgcagttct tctcggcgag cgaggctgag
       61 gccctgcggg cgctccctcc ggagcgacag ccggagcgct tcttctcgat ctggaccctg
      121 aaggaggctt acgtgaaggc gcgcgggctc ggcatcgccg cggtgccgct tcaggacttt
      181 tcgttcgctc tcgcggcgga cggctgcatc gggctctcgt tggcgccgag ccttggcgac
      241 gagcctgcgg gctggcgttt cgcctcagtc aaggtctcgg ccgaccacct gcttgctgtt
      301 gcggtccggc ttcccgcggc cgcgcggcta cgcctgcggg tgggggtgtg ggcgccggaa
      361 tgacgacgtt gcggtcccga cccgcgccgc gcaatgtgcc gccgcagacg accacggccg
      421 gctgaacggc cgtgcgggag agagcagcac gatgatcaag tactatttca acctatcacc
      481 gaaccccatg aaggtggcgc tcttcctcga ggaagccggc gttccctacg aggcggtccc
      541 ggtcgacacg cgccgcgggc agcagttcga cccggcctat ctcgccatca acccgaacgg
      601 caaggtgccg gcgatcgtcg acggagacgc caccgtcttc gacagcaacg ccatcctgct
      661 ctacctcgcc gagaagactg gccgcttcct gccgccgaac acgcccggcg cgcgcggcga
      721 gctcctctcc tggctcatgt tcgtggcgag cggcatcggc cccttctcgg gtcaggccgt
      781 gcacttcaag cattttgcgc ccgagcgggt gccgtatgcc gacacgcgct accagttcga
      841 ggcgcggcgc cactacggca tcgtcgagca acggctggcg acccggccct acatgctcgg
      901 cgagacctac acgatcgtcg acatggccct gtggggctgg gcgcgcatgg tgccctttat
      961 gatgggcgag ggcgcctggg ccgatttccc gaacctcaac cgcctgcacg acgagatcgc
     1021 ggcgcggccc gccgcggcgc gcgtcaacgc gcttcgcgaa aagcacgccg gcgccttcaa
     1081 ggccgagatg gacgacgaag cccgccgcca catgttcccg cacctcggcc agcgggccgc
     1141 atgacaggcc gtgtgggcgc gggttactcc gcgcccatca ccagcccttc gatgtcgtgc
     1201 ttctgggtca ccggcacgag cttgtcgacg acccggcaca ccaggtggtc gcgtaccgat
     1261 tgcggcaggg cgtcgtagta gtcctgcgtt accatgaggt cgtgcagttc tgcgtggccg
     1321 gcgccgggcg cgtcgacgcc gagcaccagc accggccgcg cgatgggcga ggggtgcggc
     1381 gtgccgcggt gcaccgtcag ggccgagcgg cacgaaacgt cgcccatctg cggatacttc
     1441 ttgacggcgc gctcctcgaa tcggggccag agctcctgcg ggggaaacat ctcgtgcttc
     1501 cactcccggc cgtcgtccca ctgcgtgccg ggcgcgatct cgaagggccc catgtcgggc
     1561 gtgacgtcga cgcccgtcag gttgaacgcg agcgacgtga tgcggcgctc ctcgtacgac
     1621 tcgcgtggcg acgggaaatc gcggtgccag ggctgacgct tggcaccctg gaacggcgtg
     1681 tcgaagccga tctcgacgat ctggtagtcg gggccgcaca ccgcctcggc catgccggcg
     1741 atccagggat gcgtgacgag gtcgacgaag ccgccgaagg cctgtggatg gatctcgacg
     1801 taccagcgcc gcgggccgcg accgaccgcg ccgcccggcc gctggatcgc ctcccagaag
     1861 gccgtcgtca tgtcctcgcg catggcctcc gcccactcgc gcgagaaggc gcctctgcgg
     1921 ccgacgatac cgtcgcggta gagcgtgtcc acgtccgccg agaggtcgag gccggggtcg
     1981 tgggtctcgg tacgaagggc gctggcggtc acggggtggc tcctcgaatc ggcgccgaga
     2041 tgcgggcggc cgcgcctctg tgagttggct ttgaggcagg agtgcggggg cttggcggtg
     2101 acggccgcct aggcgaacag cttctttagc tcgcccttca tgatcttgcc gttggggttg
     2161 cggggcaggg gctcggtctg gaagagcacg cgcacgggca ccttgaaggc ggcgaggcgc
     2221 tcggagacgt aggcgcgcag ctcctcctcc gtggcggtgg cgcccgggca tagacagacg
     2281 acggcggcgg gctcctcgcc gagcgtgcgg tgcgggatgc ccacgagggc gacatccatg
     2341 acggccgggt gctcgtagag cgcgtcctcg acctcgatgc agtagatgtt ctcgccgccg
     2401 cggatgagca tgtccttggc gcggtcgacg atgtagcaga agccctcctc gtcgaggcgc
     2461 gccacgtcgc cggtgcgcag ccagcccccg acgaaggctt cggcggtcgc ttccggcttg
     2521 ttccagtagc ccttgaccac gttggggccc ttgacccaga gctcgccgac ggtgttcggc
     2581 ggcagcacgc ggccgtcgcc gtcgcggatc tgcatctcgc agacggggag cggcgggccg
     2641 cagctatcag ggcggtgctg gtagtcctcg ccctgatggt gcgtgaacgt cgcggacgtc
     2701 tcggtcatgc cccagccggt cgccggcacg gagttcggga agacctcgcg catgcgccgc
     2761 acgagctcg
//
LOCUS       DASQWN010000519         2725 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_143739, whole genome shotgun sequence.
ACCESSION   DASQWN010000519 DASQWN010000000
VERSION     DASQWN010000519.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2725)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2725)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2725
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_143739"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            28..1236
                     /locus_tag="VE686_09715"
     CDS             28..1236
                     /locus_tag="VE686_09715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020093274.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UbiH/UbiF family hydroxylase"
                     /protein_id="HYY84759.1"
                     /translation="MSAARMVDVAVVGAGPAGLCAALALARDGFSVALAGAPEMRRDG
                     RTVALLDGSVRLMKALGAWQALEPDAAPLETMRLIDDTGSLFRPPPVAFRADEIGLEA
                     FGWNVENANLVARLTEPVARHGSVLHLPANARDFGNAGEHAALSLADGTELHAKLVVA
                     ADGRNSRLREAAGLRARTWSYPQSALTAILAHDRDHRDASTEFHTRAGPFTLVPLPGR
                     RSSLVWVMSPAQGERLSRLDDSDLEGAIERQAQSMLGRMRLDAPRGLFPLNGLSVERY
                     GAERIALVGEAAHVIPPIGAQGLNLGFRDVASLRDAVVDARAAGEDIGSAAALARYEA
                     SRRIDVPLRTTAVDGLNRSLLADFLPIDLLRGLGIVALSSIGPLRRAVMREGVLPRLG
                     APRLMRDEPA"
     gene            complement(1233..2219)
                     /locus_tag="VE686_09720"
     CDS             complement(1233..2219)
                     /locus_tag="VE686_09720"
                     /EC_number="1.8.5.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009029708.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004364 - glutathione transferase activity
                     [Evidence IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione S-transferase family protein"
                     /protein_id="HYY84760.1"
                     /translation="MGLLIDGLWRDQWYDTKSTGGRFVRSDSRFRNWITADGSAGATG
                     GGGFRAEPARYHLYVSLACPWAHRTLIFRALKGLEGMIGLSVVHWRMLENGWTFEDGP
                     GVVPDPINGARYLYEVYGAADPSYTGRVTVPVLWDKARATIVNNESAEIIRMLNSAFD
                     GVGAKPGDYYPVELRAEIDALNERIYHTVNNGVYKAGFATTQEAYEEAVGPVFDTLDG
                     LDERLATRRYLCGDTLTEADWRLFTTLVRFDAVYVGHFKCNRRRIADYPNLWPYLRDL
                     YAVPGVAATVNLQHIKGHYYESHRGINPTGIVPVGPDLDFTAPQERAALAWA"
     gene            complement(2332..>2725)
                     /locus_tag="VE686_09725"
     CDS             complement(2332..>2725)
                     /locus_tag="VE686_09725"
                     /inference="COORDINATES: protein motif:HMM:NF014564.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0008410 - CoA-transferase activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="CoA transferase"
                     /protein_id="HYY84761.1"
                     /translation="GLYPTADGRFLAVGALEQKFWDDFCAGVGLADALRNDKADPSAT
                     RAAVAALVRGKTAVQWEAILTPLDCCATVVASLEEAIADPHFRARGLLDAKTSVGAPA
                     VPAVAVPISPALRRAAEEPRQVPDPDRR"
BASE COUNT          368 a          991 c          969 g          397 t
ORIGIN      
        1 gctcgccgcc ggcgccgcac gaacggcatg agcgcagcgc gcatggtcga cgtcgcggtc
       61 gtcggcgccg ggccggcggg cctttgcgct gcgctggccc ttgcccggga cggcttctcg
      121 gtcgcgctcg ccggagcgcc cgagatgcgg cgcgacggcc gcactgtggc gctgctcgac
      181 ggttcggtcc gcctcatgaa ggcgctgggt gcgtggcagg cgctcgagcc ggacgcggcg
      241 cccctcgaga ccatgcgcct catcgacgac accggcagcc tgttccggcc gccgcccgtc
      301 gccttccgcg ccgacgagat cggcctcgag gccttcggct ggaacgtcga gaacgcgaac
      361 ctcgtggccc gtctcaccga gcccgtcgct cggcacggct ccgttcttca cctgcccgcg
      421 aacgcgcggg acttcggcaa cgccggggag cacgcggcgc tctccctcgc cgacggcacc
      481 gaactgcacg cgaagcttgt cgtcgcggcg gacgggcgca attcgcgtct gcgcgaggcg
      541 gcgggcttgc gtgcccggac gtggtcgtat ccgcagtcgg cactgacggc gatcctggcg
      601 cacgaccgcg accaccggga tgcctcgacg gagttccaca cccgcgccgg ccccttcacc
      661 ctggtgccgt tgccgggccg gcgctcgagt ctcgtctggg tcatgagccc ggcgcaaggc
      721 gagcgcctga gccgtcttga cgacagcgac ctcgagggcg ccatcgagcg acaggcgcag
      781 tcgatgctcg gccgcatgcg cctcgatgcg ccgcgcgggc tgtttccctt gaacggcctc
      841 tcggtcgagc gctacggcgc cgagcgcatc gcgcttgtcg gcgaggccgc gcacgtgatc
      901 ccgcccatcg gcgcgcaggg gctcaacctc ggcttccgcg acgtcgcgag cctgcgcgac
      961 gccgtggttg acgcccgtgc cgccggcgag gacatcggct cggccgcggc gctcgcccgc
     1021 tacgaggcaa gccggcgcat cgacgtgccg ctccggacga cggccgtcga tggcctcaac
     1081 cgcagcctgc tcgccgactt cctgccgatc gatttgttgc gcggcctcgg catcgtcgcc
     1141 ctgtcgagca tcggcccgct ccgccgcgcc gtcatgcgcg aaggcgtcct cccccgcctc
     1201 ggcgcgcccc ggctgatgcg ggacgaacct gcctaagccc aagccagcgc ggcgcgctcc
     1261 tgaggcgccg tgaaatcgag gtcgggcccg acggggacga tgccggtcgg attgatgccg
     1321 cggtggctct cgtaatagtg ccccttgatg tgctgcaggt tcaccgtcgc ggcgacaccc
     1381 gggaccgcgt agaggtcgcg cagatagggc cacagattcg ggtagtcggc gatgcggcgc
     1441 cggttgcact tgaagtgccc gacgtagacg gcatcgaagc gcacgagcgt cgtgaacagg
     1501 cgccagtcgg cttccgtcaa cgtgtccccg cagagatagc ggcgcgtggc aagccgctcg
     1561 tcgagcccat cgagcgtgtc gaacacaggt ccgaccgcct cctcgtaggc ctcctgggtg
     1621 gtcgcgaagc ccgccttgta cacaccgttg ttgacggtgt ggtagatgcg ctcgttgagc
     1681 gcgtcgatct cggcccggag ctccacgggg tagtagtcgc cgggcttggc gccgaccccg
     1741 tcgaacgcgg agttgagcat gcggatgatc tccgccgact cgttattgac gatcgtcgcg
     1801 cgcgccttgt cccacagcac cggcacggtc acgcggcccg tgtaggacgg gtcggcggcg
     1861 ccgtagacct cataaaggta tcgcgcgccg ttgatcggat ccggcacgac gcccgggccg
     1921 tcctcgaagg tccagccgtt ctcgagcatg cgccagtgga cgaccgacag gccgatcatg
     1981 ccctcgagcc ccttcagcgc gcggaagatc agcgtgcgat gcgcccacgg gcaggcgagc
     2041 gaaacgtaga ggtggtagcg cgccggctcg gccctgaacc cgcccccgcc cgtcgctccg
     2101 gccgacccgt ccgcggtgat ccagttgcgg aagcggctgt cgctgcgcac gaagcgcccg
     2161 cccgtgctct tcgtgtcgta ccactggtcc cgccacaggc cgtcgatgag aagtcccacg
     2221 cgccgctcct tcgcctcacc ccccgaaggt aggcgccggg cgacggagtg cgagagcgcc
     2281 ggatgcacgc acggtcctgc agcggcgcaa gcgccgggtc gtcgaggagc gctagcgccg
     2341 atccgggtcg ggcacctgcc gcggctcttc cgcggcacgg cgcagggcgg ggctgatcgg
     2401 gaccgcgacg gccggtacgg ccggcgcgcc gacgctggtc ttggcgtcga ggagcccgcg
     2461 ggcccggaag tgcggatcgg caatcgcctc ctcgagggag gcgaccacgg tggcgcagca
     2521 gtcgaggggc gtgaggatgg cctcccactg cactgcggtc ttcccgcgca cgagcgccgc
     2581 gacggccgct cgggtcgccg acgggtcggc cttgtcgttg cgcagtgcat cggccaaccc
     2641 gacgccggcg cagaagtcgt cccagaactt ctgctcgaga gcgccgacgg cgaggaagcg
     2701 gccgtccgcg gtcggataga gcccg
//
LOCUS       DASQWN010000520         4397 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_540819, whole genome shotgun sequence.
ACCESSION   DASQWN010000520 DASQWN010000000
VERSION     DASQWN010000520.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 4397)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4397)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4397
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_540819"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..345
                     /locus_tag="VE686_09730"
     CDS             <1..345
                     /locus_tag="VE686_09730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009735559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid ABC transporter
                     permease"
                     /protein_id="HYY84762.1"
                     /translation="ARLMGIDVRRSVAASYAASAVLAGIAGLLIAPLFNVSSEMGTMF
                     GLKAFAAAIIGGLGSAAGVMLAGVCLGLIEVFTTTYFGSVYTQLLTFAAVILILVVLP
                     NGLLGRAGVKKV"
     gene            342..2879
                     /locus_tag="VE686_09735"
     CDS             342..2879
                     /locus_tag="VE686_09735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019903156.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid ABC transporter
                     ATP-binding protein/permease"
                     /protein_id="HYY84763.1"
                     /translation="MRLAGWSIGAALFAAALAYAAMADSYGVFLVATTALTAIACIGL
                     NVLLGLSGQVSLGHVGFTAIGAYATALLMEKAGWSFWAAMPASVAIATVVGGALAMPA
                     LRVRGPYLAMITIAFGFIVEHGAVEWRELTGGGNGFLLTAAPTIFGTPLGERGIAILG
                     VCLVALALLLFWRLKESGWGFAMRAARDAEVASRAIGIDLVRVRTAAFMISAGAAALG
                     GALFAPLNGYISPSSFPFLQSILFLLAVMVGGAGTTFGPLIGAVIVVLLPELLSNLAE
                     YRLLVFGLLLLAVLRLAPAGIVGTVERLLARVLPGPAARRAQTEDIGPALQLADTPAA
                     TLEVRDLSLAFGGVRAVDAVSLTAAPGEVTSIIGPNGAGKTSALNLLCGFYRPDAGTV
                     TLGADVVSGLPSHALARRGIARTFQTTQLFGSLTAVENVALAARNGRLGGMVSPLLRA
                     DEMRFAGALLDFVGAQASAGRLASSLAHGEKRLVEIARALAMRPKVILLDEPAAGLSQ
                     ADKQRLGELLRRVAGLGITVILVEHDMGMVMSLSDRIHVLDAGSQIASGAPETVRASA
                     AVRKAYLGETAQPQHVLPAPRESASADGTLALAVEAMSASYGASAVLTDVSIRVRAGE
                     AVAVLGANGAGKTTLMRAVAGLAPPRASGSVHLGGTAIDHLPAHRRVRAGLVLVPEGR
                     QVFPELTVLENLKLGAFTRSEDVADEIEAMFTRFPRLRERKEQRAGLLSGGEQQMLAV
                     ARALLAKPKVLMLDEPSLGLAPKAAEELFAALRRLREEGMTLVVVDQMAGHALALSDH
                     AYLLETGAVVKQGRADDLAQDPGLEEAYLGRSRTQEATPETRHASIA"
     gene            2958..3155
                     /locus_tag="VE686_09740"
     CDS             2958..3155
                     /locus_tag="VE686_09740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002715069.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY84764.1"
                     /translation="MQDEPQDGDHGPAALLNGEVKVVNVGLESFARELAAGGVQVVHV
                     DWSPPAGGDPALADLLSKLGA"
     gene            3169..>4397
                     /locus_tag="VE686_09745"
     CDS             3169..>4397
                     /locus_tag="VE686_09745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019196112.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1116 domain-containing protein"
                     /protein_id="HYY84765.1"
                     /translation="MRLIEEGNAEALRRMLEGLPVLVDVVPAREVIPALEGKVLLHSG
                     PPIGWDRMCGPMQGAIAGAIVFEGWAPDLERATEMAAAGGVAFHPNHHFDAVGPMTGI
                     TTRSMPVMVVENRRFGNRAYCTINEGLGKVMRFGGNDAEVLARLAWLRDALGPALGAA
                     LRASGGIELKGIIARGLAMGDEMHQRNVACTGLILRELAPWLARTSRDTGELAEILSF
                     IGRNDQFFLNVAMALGKALTDPVRGIEGSSIVTAMCRNGTDFGVRVSGTGDTWFVAPV
                     EMPQGLYFAGFGPEDANPDMGDSAIVETIGLGGFAMGASPAVAGFVGAGSASSAALYT
                     KAMGEITAGESPEWTIPALDFAGVPTGIDVRLVVEAGVAPVINTGIAHKQPGVGQVGA
                     GVVRAPMACFEQAVRELA"
BASE COUNT          557 a         1623 c         1528 g          689 t
ORIGIN      
        1 gcccgcctca tgggcatcga cgtgcgccgc tcggtcgccg cgagctatgc cgcctccgcc
       61 gttctcgccg gcatcgccgg cctgctgatt gcgcctctgt tcaacgtgtc gtccgagatg
      121 ggcaccatgt tcgggctcaa ggccttcgcg gccgcgatca tcggcggcct cggcagcgcc
      181 gcgggcgtga tgctcgcggg cgtgtgcctc ggcctcatcg aggtgttcac gacgacctac
      241 ttcggctcgg tctacacaca gctcctgacc ttcgcggcgg tgatcctgat cctggtcgtg
      301 cttcccaacg ggctcctcgg ccgcgccgga gtgaagaagg tatgaggctc gctgggtgga
      361 gcatcggcgc ggcgctgttc gccgccgcgc tcgcctatgc ggccatggcc gacagctacg
      421 gcgtgttcct cgtcgccacg acggcgctga cggccatcgc ctgcatcggc ctcaacgtcc
      481 tcctcggcct gtcgggccag gtctccctcg ggcacgtcgg cttcacggcc atcggcgcct
      541 acgcgacggc gctcctgatg gagaaggccg ggtggtcgtt ctgggccgcc atgccggcga
      601 gcgtcgccat cgccaccgtc gtcggcgggg cgctcgccat gccggcgctg cgggtgcgcg
      661 ggccctacct cgccatgatc accattgcct tcggctttat cgtcgagcac ggcgcggtcg
      721 agtggcgcga gctcaccggg ggcggcaacg gcttcctgct cacggcggct ccgacgatct
      781 tcgggacgcc cctcggcgag cgcggcatcg ccatcctcgg cgtgtgcctc gtcgcgctgg
      841 cgctcctgct gttctggcgc ctgaaggaga gcggatgggg cttcgcgatg cgcgccgccc
      901 gggacgccga ggtcgcaagc cgcgccatcg gcatcgacct cgtccgggtg cgcaccgcgg
      961 cgttcatgat ctcggccggc gcggccgccc tcgggggcgc gctgttcgcg ccgctcaacg
     1021 gttacatcag cccgagctcg ttcccattcc tgcagtcgat cctgttcctc ctcgccgtga
     1081 tggtcggcgg cgccgggacc acgttcggcc cgctgatcgg cgcggtcatc gtcgtgcttc
     1141 tgcccgagct cctgtcgaac ctcgccgagt atcgcctgct cgtcttcggc ctgctgcttc
     1201 tcgccgtcct gcgccttgcc cccgcgggca tcgtcggaac cgtcgagcgg cttctcgcgc
     1261 gcgtgctccc gggcccggcg gcgcgccgcg cgcaaaccga ggacatcggc cccgccctcc
     1321 agcttgccga cacgcctgca gcgacgctcg aggtgcgcga cctgtcgctc gcattcggcg
     1381 gcgtgcgcgc cgtagacgcc gtctcactca ccgccgcccc gggggaggtg acgagcatca
     1441 tcggcccgaa cggggcgggc aagacgagcg ccctcaatct cctgtgcggc ttctatcggc
     1501 cggacgccgg caccgtgacg ctcggtgcgg acgtcgtctc ggggctgccc tcgcatgcgc
     1561 ttgcgcggcg cggcatcgcg cgcaccttcc agacgacgca gctcttcggc agcctcacgg
     1621 ctgtcgagaa cgtcgccctt gcggctcgca acgggcgcct cggcgggatg gtgtcgccgc
     1681 tgctgcgcgc cgacgagatg cgcttcgccg gcgcgctcct cgacttcgtc ggcgcgcagg
     1741 cgagcgccgg acggctcgcg tcgagcctgg cgcacggcga gaagcgcctg gtcgagatcg
     1801 cccgcgcact cgccatgcgg cccaaggtca tcctcctcga cgagccggcc gccggcctgt
     1861 cgcaggccga caagcagcgc ctcggcgagc ttctgcgccg ggtcgccggt ctcggcatca
     1921 ccgtcatcct tgtcgagcac gacatgggga tggtgatgag cctgtcggac cgcatccacg
     1981 tcctcgatgc gggctcccag atcgcgagcg gcgcgcccga gaccgtccgg gcgagcgccg
     2041 ccgttcgcaa ggcctacctc ggcgagacgg cgcagccgca gcacgtcctg ccggcgcccc
     2101 gcgagtccgc gtctgccgac ggcacgctcg cgctcgcggt cgaggcgatg tcggcctcct
     2161 acggtgcttc ggcggtgctg accgatgtct cgatccgggt ccgtgcgggg gaggccgtcg
     2221 ccgtcctcgg cgcgaatggc gccggcaaga cgacgctcat gcgcgccgtc gccgggctcg
     2281 cgccgccacg cgcctccggc tcggtccacc tcggcggcac ggccatcgac caccttccgg
     2341 cgcacaggcg cgtccgcgca ggcctcgtcc tcgtgcccga aggccggcag gtctttcccg
     2401 agctcacggt cctcgaaaac ctgaagctcg gcgccttcac gcggtcggag gacgtcgcgg
     2461 acgagatcga ggccatgttc acccgcttcc cgcgtctgcg cgagcgcaag gagcagcgcg
     2521 cgggcctgct ctccggcggc gagcagcaga tgctcgccgt ggcgcgcgcg ctcctcgcca
     2581 agcccaaggt gctgatgctc gacgagccct ccctcggcct tgcgccgaag gctgccgagg
     2641 agctgttcgc ggcgctccgg cgtctgcgcg aagaaggcat gacgctcgtg gtcgtggacc
     2701 agatggcggg ccacgcgctc gcgctctcgg atcacgccta cctgctcgag accggcgccg
     2761 tggtgaagca gggccgggcc gacgatctgg cgcaggatcc cggcctcgag gaggcctatc
     2821 tcggccgcag ccgaacccag gaggccacgc ccgagacgcg gcacgcatcc atcgcgtgac
     2881 ggacggcgat cctgccgggc ggcttgacac aagtaagcgt cttcttacaa acagcggcga
     2941 cggcgcggag gaccacgatg caagacgagc cgcaggacgg cgatcacgga cccgccgcgc
     3001 ttctgaacgg cgaggtcaag gtcgtgaacg tgggcctcga gagctttgcg cgcgagctcg
     3061 cggccggcgg cgtgcaggtc gtccacgtcg attggtctcc tcccgcaggc ggcgacccgg
     3121 cccttgccga ccttctctca aagctcggcg cctgaggctc gcgaccgcat gcggctcatc
     3181 gaagaaggca atgccgaggc gctgcggcgc atgctcgaag gcctgccggt cctcgtggac
     3241 gtcgtgcccg cgcgggaggt catccccgcg ctcgaaggaa aagtgctgct gcactccggg
     3301 ccgcccatcg gctgggatcg catgtgcgga cccatgcagg gcgccatcgc cggcgcgatc
     3361 gtgttcgagg gttgggcgcc ggacctcgag cgtgcgaccg agatggccgc cgccggcggc
     3421 gtcgcgttcc atccgaacca ccatttcgac gccgtggggc cgatgaccgg catcaccacg
     3481 cgctccatgc ccgtgatggt cgtcgagaac cgccgcttcg gcaaccgggc ctactgcacc
     3541 atcaacgaag gcctcggcaa ggtgatgcgc ttcggcggca acgacgccga ggtgctcgcg
     3601 cggctggcgt ggctgcggga cgcgctcggg ccggcgctcg gcgcggcgtt gcgcgcctcc
     3661 ggcggtatcg agctcaaggg catcatcgcc cgcggactcg ccatgggcga cgagatgcac
     3721 cagcgcaacg tcgcctgcac gggcctcatc ctgcgcgagc tcgcgccctg gctcgcccga
     3781 acctcgcgcg acaccggcga gcttgccgag atcctctcgt tcatcggccg caacgaccag
     3841 ttcttcctca acgtcgccat ggcgctcggc aaggcgctga cggaccctgt ccgcggcatc
     3901 gagggctcgt ccatcgtcac ggccatgtgc cgcaacggca cggacttcgg cgtccgcgtg
     3961 agcggcacgg gagacacctg gttcgtcgcc cccgtggaga tgccgcaagg gctctacttc
     4021 gcgggcttcg gccccgagga cgccaatccc gacatgggcg actcagccat cgtcgagacg
     4081 atcgggctcg gcggcttcgc catgggcgcc tcgcccgccg ttgcggggtt cgtgggcgcc
     4141 gggtccgcct cgtcggcggc gctctacacc aaggccatgg gcgagatcac ggcgggcgag
     4201 agtcccgagt ggaccattcc ggccctggac ttcgcgggcg tgccgaccgg gatcgacgtg
     4261 aggctcgtcg tcgaggctgg cgttgccccc gtcatcaaca ccggcattgc gcacaagcag
     4321 ccgggggtcg ggcaggtggg cgccggcgtg gtccgcgcgc ccatggcctg cttcgagcag
     4381 gccgtccggg agcttgc
//
LOCUS       DASQWN010000521         2059 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_243134, whole genome shotgun sequence.
ACCESSION   DASQWN010000521 DASQWN010000000
VERSION     DASQWN010000521.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2059)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2059)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2059
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_243134"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..880)
                     /gene="tsf"
                     /locus_tag="VE686_09750"
     CDS             complement(<1..880)
                     /gene="tsf"
                     /locus_tag="VE686_09750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012334545.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003746 - translation elongation factor
                     activity [Evidence IEA];
                     GO_process: GO:0006414 - translational elongation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="translation elongation factor Ts"
                     /protein_id="HYY84766.1"
                     /translation="MANITAAMVKDLREKTGAGMMDCKGALNETNGDLEAAVDWLRKK
                     GLAKAAKKAGRTAAEGLVAVESSGRTAAIVEVNSETDFVARNEQFQAFVRETAKLALM
                     GAGTLEALEATHFPGSQTTIRDRLQELIATIGENMTLRRVARLDVTQGVIATYVHNAV
                     SEGLGKIGVLVALESAGDVDQLSLLGRQIAMHVAATNPAALDASGIDAAVVERESVIL
                     REKNAGKPDHVMQKIVESGLKSYYKEVTLLEQPFVHDPSKSVAQILKEAAGKVGAPVA
                     LKAFARFALGESIEKDD"
     gene            complement(992..2023)
                     /locus_tag="VE686_09755"
     CDS             complement(992..2023)
                     /locus_tag="VE686_09755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003598033.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S2"
                     /protein_id="HYY84767.1"
                     /translation="MALPDFSMRQLLEAGAHFGHQSHRWNPKMAPYIFGTRNNIHVID
                     LAQTVPALYRALQAVSDTVAKGGRVLFVGTKRQAADQIAEAAKRSAQYYVNARWLGGM
                     LTNWKTISGSISRLRKVDEILAGGGQGLTKKERLMLAREKEKLERALGGIKDMGGVPD
                     LLFVIDTNKEALAIKEAQRLGIPVAAIVDTNSDPDGITFVVPANDDAGRAIALYCDLI
                     ARAAIDGISRGHGDLGIDVGASEDPMPEELPANVNEAPAVAEAPAEQFERLSAPRGAP
                     DDLTKLHGVGPQLEKKLNDAGVYHFWQIAAMQPDDAAKLDTDLKLNGRATRDGWIEQA
                     RTMLDAVAA"
BASE COUNT          261 a          693 c          736 g          369 t
ORIGIN      
        1 cgtcgtcctt ctcgatgctc tccccgagcg cgaaccgggc gaaggccttg agcgccactg
       61 gcgcgccgac cttgccggca gcctccttga ggatctgggc gacggacttc gagggatcgt
      121 gcacgaaagg ctgctcgagg agggtcacct ccttgtagta gctcttcagc ccgctctcga
      181 cgatcttctg catgacgtgg tcgggcttgc cggcgttctt ctcgcgcagg atgacgctct
      241 cacgctcgac cacagccgca tcgatacccg aagcgtcgag cgcggccggg ttggtggcgg
      301 cgacgtgcat ggcgatctgg cggcccagca gtgacagctg gtcgacgtcg ccggcggact
      361 ccagcgcgac gaggacgccg atcttgccca agccctcgga aaccgcgttg tggacgtagg
      421 tggcgatgac gccctgcgtg acgtcgagcc gcgcgacgcg gcgcagggtc atgttctcgc
      481 cgatggtggc gatgagctcc tgcaggcggt ccctgatggt cgtctgcgag cccgggaagt
      541 gggtcgcctc gagcgcctcg agggtgcccg cccccatgag ggcaagcttc gccgtctcgc
      601 gcacaaaagc ctggaactgc tcgttgcggg cgacgaagtc ggtctcggag ttcacctcga
      661 cgatcgccgc cgtgcggccc gacgactcga ccgccacgag cccctcggcg gccgtgcgcc
      721 cggctttctt ggccgccttg gcgaggccct tcttgcgcag ccagtcgacg gcggcctcga
      781 ggtcgccgtt ggtctcgttg agcgcgccct tgcagtccat catgccggcg ccggtcttct
      841 cgcgcaggtc cttgaccatc gcggcggtga tgttggccat gcctcgtcct ctcaaaagtc
      901 atgcgggcgc ccggccgctc gcttgcacaa ggagcgccgg gctgccggtt gtcacgctag
      961 cgcccggggt ccgccccggg cgtcgggatc tttacgcggc gacggcgtcc agcatggtgc
     1021 gggcctgctc gatccagccg tcgcgggtgg cgcggccgtt gagcttgagg tccgtgtcga
     1081 gcttcgccgc gtcgtcgggc tgcatcgcgg cgatctgcca gaaatggtag acgccggcgt
     1141 cgttgagctt cttctcgagc tgcgggccga cgccgtgcag cttggtgagg tcgtccggcg
     1201 cgccgcgcgg cgccgacagg cgctcgaact gctcggccgg cgcctcggcg accgccgggg
     1261 cctcgttcac gttcgccggc agctcctcgg gcatcgggtc ctcggaggcg ccgacgtcga
     1321 tgccgagatc gccgtggccg cgcgagatgc cgtcgatggc cgcccgggcg atgaggtcgc
     1381 agtagagcgc gatcgccctc cccgcgtcgt cgttcgccgg caccacgaag gtgatcccgt
     1441 ccgggtcgct attggtgtcg acgatcgccg cgaccgggat gccgaggcgc tgcgcctcct
     1501 tgatggcgag cgcctccttg ttggtgtcga tgacgaacag gaggtcgggc acgccgccca
     1561 tgtccttgat gccgccgagc gcgcgctcga gcttctcctt ctcgcgcgcc agcatcaggc
     1621 gctccttctt ggtgaggccc tggccgccgc cggcgaggat ctcgtcgacc ttgcgcaggc
     1681 gcgagatcga gcccgagatg gtcttccagt tggtcagcat gccgccgagc cagcgggcgt
     1741 tgacgtagta ttgcgccgag cgcttggccg cctcggcgat ctggtcggcc gcctggcgct
     1801 tggtgccgac gaagagcacg cgcccgccct tggcgacggt gtcgctcacg gcctgcaggg
     1861 cccggtagag cgccggcacg gtctgggcga ggtcgatgac gtggatgttg ttgcgcgtgc
     1921 cgaagatgta gggcgccatc ttcgggttcc agcggtgcga ctggtggcca aagtgggcgc
     1981 cggcctcgag cagctggcgc atggaaaaat cgggaagtgc catcggtgat ctgtctccgg
     2041 ttgagcctcc gcggagcga
//
LOCUS       DASQWN010000522         4555 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1085628, whole genome shotgun sequence.
ACCESSION   DASQWN010000522 DASQWN010000000
VERSION     DASQWN010000522.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 4555)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4555)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4555
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1085628"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            125..607
                     /locus_tag="VE686_09760"
     CDS             125..607
                     /locus_tag="VE686_09760"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY84768.1"
                     /translation="MSMPLSARRHAPPANVAQFPDRFIENEVVLSARETAAVSAMLRQ
                     AKSAIAALRQRVTDLESERDEAQGRAHAAEERADADTVLAKSLQENLADTLARNEALE
                     TDMTAALNEREQRLWSAEARVQELERRATEAEVRAAAAETREWETKARLARAREALGE
                     "
     gene            773..1840
                     /locus_tag="VE686_09765"
     CDS             773..1840
                     /locus_tag="VE686_09765"
                     /EC_number="2.3.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012317509.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016747 - acyltransferase activity,
                     transferring groups other than amino-acyl groups [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyltransferase"
                     /protein_id="HYY84769.1"
                     /translation="MRTPTVAAALARSYDNFAVIRLALALAVVVSHAFSVSVGSTRFE
                     PLFATTGFTLGEHAVNGFFAVSGFLVTMSFDRRGWRKYVLARVLRVAPGLIVATFAVV
                     ALGAALTRLPAAEYWREPSLWRFVLRTLTEFKSSAPLPGVFENNPYQFPMGTVWTLKY
                     EVFCYAGVFALGVAGLLRRRLTAMILVSGLFASLVAIDAFVPNASEKVHTALRLTLAF
                     SIGGSLYLWRDRARISTVAVVVLALATALLHASPFYKALLFATESYGVLWLALMPGLS
                     HPVLALRHDLSFGTYLYGWPVQQALVQLAPAAGALSLLAPSLAITLGVAALSWFFVER
                     PALSLKVRWGDTPRGDGSAAW"
     gene            complement(1850..3009)
                     /gene="rffA"
                     /locus_tag="VE686_09770"
                     /gene_synonym="fcnA"
                     /gene_synonym="wecE"
                     /pseudo
     CDS             complement(1850..3009)
                     /gene="rffA"
                     /locus_tag="VE686_09770"
                     /gene_synonym="fcnA"
                     /gene_synonym="wecE"
                     /inference="COORDINATES: protein motif:HMM:NF013227.4"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0019180 -
                     dTDP-4-amino-4,6-dideoxygalactose transaminase activity
                     [Evidence IEA];
                     GO_process: GO:0009246 - enterobacterial common antigen
                     biosynthetic process [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="dTDP-4-amino-4,6-dideoxygalactose transaminase"
     gene            complement(3058..4434)
                     /locus_tag="VE686_09775"
     CDS             complement(3058..4434)
                     /locus_tag="VE686_09775"
                     /inference="COORDINATES: protein motif:HMM:NF024880.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
                     /protein_id="HYY84770.1"
                     /translation="MTIRVLVFPSVNEPGLEIVQALLKSNKVEVLGGSSVAPAYDPSR
                     ILLDRHLACPALGETGFRARFEALLREHAVDLVFPTVDALVAEFAGWTGAPARFVVSS
                     PEAAALVLSKRRTYAFLAGHVPVPRIYGGDAPLPAFAKPDIGSGSRGGFPVETEQELA
                     LARSRGLLVHELLPGPEYTVDCVSGLGGELLFARGISVGTAGLRHPEIEESVRRIADR
                     LPLRGPWFAQFKAHELRRFLSLVLTGEEPRIFEVGCGYGDAVEVIRSVLGERAFKYYG
                     VDYWAAFIEHANATRSAPDIRFENRDLRDMAEEGFRLPEPPDCIIALETMEHVTELDV
                     PKIVDWLASMKVPTLITVPNEVGPALLVKNLGSALMGYRRHREYRIQDTLNAAFGRME
                     RLRAHGTGHLGFDWRWLLSVLKQRFTVEVRTSPLPFVPRSLAPSIFFYCWPRDWADPP
                     RSQRPLDV"
BASE COUNT          709 a         1557 c         1590 g          699 t
ORIGIN      
        1 aacccggacg cccagagcat caacattgtt gaacggtcgc tcgaggctgg agccgtcgcc
       61 cgttgctcca agtaggagag tgttaaccat gatgacctag gtgtcgcgct gtggagatct
      121 tgagatgagc atgcccctca gcgcccgccg ccacgcgccg ccggcgaacg tcgcgcagtt
      181 tcccgatcgc ttcatcgaaa acgaggtggt gctgtcggcc cgcgagaccg ccgccgtctc
      241 ggcgatgctc aggcaggcga aaagcgccat agcggcgctg cggcagcgcg tgacggatct
      301 cgagagcgaa cgcgacgagg cgcagggccg ggcccacgcc gccgaggaac gcgccgacgc
      361 cgatacggtg ctggcgaaat cgctgcagga gaacctcgcc gacaccctcg cgcgaaacga
      421 ggcgctcgag accgatatga ccgccgcgct gaacgagcgc gagcagcgcc tgtggagcgc
      481 cgaggcgcgt gtgcaggagc tcgagcgccg cgccaccgag gccgaggtcc gcgccgccgc
      541 ggcggagacg cgcgaatggg agaccaaggc tcgcctggcg cgcgcccgcg aggcgctcgg
      601 cgagtagggc cgccgcgacc gcgtccggaa tagccgggcg ccggttgcct cggcacgacg
      661 gtccatgaca gatgccctcg acggcgagtt ccctcgaggt gtcggagcag tgaggatcga
      721 caaggtcgcg caaggcgccg ggcaatcccg tgacgcgccc ggtctggcgc tcatgcgtac
      781 gccgaccgtg gctgccgcgc tcgcgcgatc ctacgacaat ttcgccgtca tccgcctcgc
      841 gctcgccctc gcggtcgtgg tctcgcacgc cttcagcgtg tccgtcggca gcaccaggtt
      901 cgagcctttg ttcgcgacga ccggcttcac cctcggcgag cacgccgtca acgggttctt
      961 cgccgtgtcg gggttcctgg tgaccatgag cttcgaccgg cggggctggc gcaagtacgt
     1021 gctggcgcgc gttctgcggg tcgcgcccgg tctgatcgtc gcgacgttcg cggtcgtggc
     1081 gctcggtgca gctctcacgc gcctgccggc cgctgagtac tggcgcgagc cgagcctgtg
     1141 gcgcttcgtc ctgcgcaccc tgaccgagtt caagagctcg gctcccctcc cgggcgtgtt
     1201 cgagaacaac ccctaccagt tccccatggg aacggtgtgg acgctgaaat acgaggtgtt
     1261 ctgctacgcc ggagtctttg ccctcggggt cgccgggttg ctgcggcgcc ggctcacggc
     1321 gatgatcctc gtttccggcc tcttcgccag tctcgtcgca atcgacgcgt tcgtcccgaa
     1381 cgcctcggaa aaagtgcaca cggccctgcg gctgacgctc gccttctcga tcggcggctc
     1441 cctctacctc tggcgcgacc gggcgcgcat ctcgaccgtc gccgtcgtcg tgctggctct
     1501 cgcgacggcg ctcctgcacg cctcgccctt ctacaaggcc ctcctgttcg cgaccgagag
     1561 ctacggcgtg ctgtggctgg cgctcatgcc cgggctgtcg cacccggtcc tcgcccttcg
     1621 ccacgatctt tccttcggaa cctacctcta cggctggccg gtgcagcagg ccctcgtgca
     1681 gctcgctccc gcggcgggcg cgctctcgct tctcgcgccc tcccttgcga tcacgctcgg
     1741 ggttgccgcc ctgtcgtggt tcttcgtcga gcggccggcg ctgtcgctga aagtgcgctg
     1801 gggcgacacg ccccggggcg acggctcggc cgcctggtga ggcaagcggt cagagcaggc
     1861 ggtcgaggtg gcgctgcagc cgctcgatca cccgcggaag cgcgtcgccc atgcgggggt
     1921 agagcggcag gcggacgagg cgggcgctga gatcctccgt cacggcgagc ttgcccgacg
     1981 tgcgtccgaa ccggcgcccg gcgggcgagc tgtgcagcgg cacgtagtgg aagggcgtca
     2041 tgatgccgtc ctcgcgcatc cgcccgatga gggcctcgcg cacatcggcg gacggcagga
     2101 tgacgtagta caggtgcccg ttgtgcccgc agtgcgacgg gatcgtgggc gtgccgatgc
     2161 cgcggttgcc gaagggccgc agggcctcgt cgtaggcggt ccagctcgcg agacggtcgg
     2221 cccggatggc gtccgccgcc tcgagctgcc cgaggaggaa ggacgcgatc aactcgcccg
     2281 gcaggaacga cgagccgatg tcgacccagg tgtacttgtc gacctccccg cggaagaagc
     2341 gcttccggtc ggtgcccttc tcgcggatga tctcggcgcg ctgcaccagg gccggatcgt
     2401 tgatggcaag gcagccgccc tcgcccgaga tgacgttctt ggtctcgtgg aagctgaagg
     2461 ccgcaagcgc cccgagcgag ccggcgctgc ggccccggta cgtcgagccg agagcctggg
     2521 cggcgtcctc aacgatggcg agcccgtgcc ggcgggcgat gccgtcgatc gggtccatct
     2581 cggccggaac cccggcgtag tgcaccggaa agatcgcctt cgtccgcgcc gtgacggcgg
     2641 cttcgaccag cctttcatcg agattgagcg tgtccaggcg aacgtccacg aacaccggca
     2701 cgccgcccct caggaccacc gcgttcgccg tcgacacgaa ggtgaacgac gcatgatcgc
     2761 ctcgtcgccc ggcccgatgt cgagaaggag cgccgccatc tcgagggcgg cggtgcagga
     2821 gtgcgtgagc agcaccgcac cggcgccgat ctcctcggca agccggcgct ggcaacgctc
     2881 cgtgaatgtg ccgtcgcccg cgagttgccc gcgctcggcc gcctcgcgga tgtagtcgag
     2941 ctcgttgcca gcgagcgtcg ggcggttgaa ggggacggtc acggcggctc cgcgaggtgc
     3001 gcgagccaca ataccggcgc cctgcaaagc ttcaaccgaa agtcgggacg gccaggatca
     3061 cacgtccagc ggccgttgcg accgcggcgg gtcggcccag tcgcgaggcc agcaatagaa
     3121 gaagatggaa ggcgcgaggc tgcgtggcac gaacggcaac ggcgacgtgc gaacctcgac
     3181 ggtgaagcgc tgcttcagga cggacaggag ccaacgccag tcgaagccca agtggccggt
     3241 gccgtgcgcc cgaagccgct ccattcggcc gaaagccgcg ttgagtgtgt cttgaatgcg
     3301 atactcgcga tggcggcgat agcccatgag agcgctgccg agattcttga cgaggagcgc
     3361 cggcccgacc tcgttcggca ccgtgatcaa ggtcggcacc ttcatgctgg cgagccagtc
     3421 gacgatcttc ggaacgtcga gctcggtcac gtgctccatt gtctcgagag cgatgatgca
     3481 gtcgggaggc tccgggaggc ggaagccttc ctccgccatg tcgcgcaggt cgcggttctc
     3541 gaaacggatg tcaggcgcgc tgcgggtcgc gttcgcgtgc tcgatgaagg ccgcccaata
     3601 atccacgccg taatacttga acgcgcgttc cccaagcacg ctcctgatga cctcgacagc
     3661 gtcgccgtag ccgcacccta cctcgaaaat cctcggttcc tccccggtaa ggacgagcga
     3721 caggaaccgt ctcagttcat gagccttgaa ctgcgcgaac cagggccctc tcagggggag
     3781 gcggtcggcg atgcgccgga cgctctcctc gatctcagga tggcgcaggc ccgccgtgcc
     3841 gacggagatg ccgcgcgcga agagaagctc gccgccgagg ccgctcacgc agtcgaccgt
     3901 gtattccggc ccgggcagca gttcgtgcac caggagcccg cggctgcgcg caagcgcgag
     3961 ctcctgctcc gtctcgaccg gaaagccgcc gcggctgccg ctgcctatgt cgggcttggc
     4021 aaaggcaggc agcggcgcgt cgccaccgta gatccgcggg accggaacat gccccgccaa
     4081 gaacgcgtag gtgcggcgct tcgagagcac gagggcggcg gcttccggcg agctcacgac
     4141 gaagcgggcg ggggcgccgg tccagccggc gaactcggcc acgagggcgt ccacggtcgg
     4201 aaagacgagg tcgacggcgt gctcccgcag cagcgcctcg aagcgcgcgc ggaatccggt
     4261 ctcgccaagg gcgggacagg cgaggtggcg gtccagaagg attcgcgacg ggtcgtacgc
     4321 cggggcgacg ctgctgccgc cgagcacctc gaccttgttg ctcttcaaaa gcgcctggac
     4381 gatctcgagc cccggctcgt tcacggacgg gaagacgagg acgcggatcg tcacgggcgc
     4441 ccttcgtcgg gatcgaggtt tacggtgtcg cggacgaagt agaggggccg cttcttcgcc
     4501 tcctcgaacg tcttgccgac gtagatgccg acgatccccg tgatgaagat ctgca
//
LOCUS       DASQWN010000523         2433 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_95113, whole genome shotgun sequence.
ACCESSION   DASQWN010000523 DASQWN010000000
VERSION     DASQWN010000523.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2433)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2433)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2433
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_95113"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..793
                     /locus_tag="VE686_09780"
     CDS             <1..793
                     /locus_tag="VE686_09780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018387382.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="glutamate synthase subunit alpha"
                     /protein_id="HYY84771.1"
                     /translation="SGEIAIRHGHEGLPDDTICVRLAGTAGQSFGAWVAAGVTLILEG
                     NANDYVGKGLSGGRIVVRPPASTSVVAERSMIVGNTVLYGAIAGECYFRGVAGERFAV
                     RNSGAIAVVEGTGDHGCEYMTGGVIVVIGQTGRNFAAGMSGGIAYVLDEDGSFAKRCN
                     LSMVDLEPVTEEDELMERLHHHGGDLEFKGRIDVLADMSGHDAERLHQLISNHRLYTG
                     STRAKEILDNWAEYRHRFVKVMPVEYRRALREIEESQRIASVAAE"
     gene            950..2368
                     /locus_tag="VE686_09785"
     CDS             950..2368
                     /locus_tag="VE686_09785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012029768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate synthase subunit beta"
                     /protein_id="HYY84772.1"
                     /translation="MGKVTGFLEIDRRDRKYAPASDRIRHYREFVIPLGAEATRDQAA
                     RCMECGIPFCHTGCPVNNQIPDFNDLVYNDDWHEALRNLQSTNNFPEFTGRVCPAPCE
                     ASCTLNLEDSPVTIKTIECAIADRGWQEGWIVPEPAEHQTGKRVAVIGAGPAGLAAAQ
                     QLARVGHEVHVYEKHARAGGLLRYGIPDFKMEKHLVERRVRQMEAEGVVFHYGVHVGH
                     TMPGKQLVDEYDAVLLSGGAEKPRDLAIEGRDLGGIHFAMDFLPQQNRRVSGENTDVA
                     DPILATAKHVVVIGGGDTGSDCIGTSVRQGALSVTQLEIMPQPPVKENKLLTWPDWPL
                     KMRTSSSHEEGAERDFAVTTTRFSGKNGRVTTLHCARVDGAFKPIPGTEFELKADLVL
                     LAMGFVSPVQEGLLSELGVEFDPRGNVKADTRAYRTSLDKVFSAGDMRRGQSLIVWAI
                     REGRQAARAIDEYLTGSTVLPS"
BASE COUNT          413 a          855 c          818 g          347 t
ORIGIN      
        1 gtcaggcgag atcgctatcc gccacggcca cgaagggctt cccgacgaca cgatctgcgt
       61 gaggcttgcc ggcaccgccg gccaaagctt cggagcctgg gtggcggcgg gcgtgacgct
      121 catcctcgag gggaatgcaa acgactacgt cggcaagggc ctctctggcg ggcgaatcgt
      181 ggtgcggccg ccggcgagca ccagcgtcgt ggcggagcgc tcgatgatcg ttggcaacac
      241 cgtgctctac ggcgcgatcg cgggcgagtg ctatttccgc ggcgtcgccg gcgagcgctt
      301 cgcagtgcgc aactccggcg ccatcgcggt cgtcgagggc acgggcgacc acggctgcga
      361 gtacatgacg ggcggcgtca tcgtcgtcat cggccagacc gggcgcaact tcgccgccgg
      421 catgtcgggc ggcatcgcct acgtgctcga cgaggacggc tcgttcgcca agcgctgcaa
      481 cctctccatg gtcgatctcg agccggtcac cgaggaggac gagctcatgg agcgcctcca
      541 ccaccacggc ggcgacctcg agttcaaggg ccgcatcgac gtcctcgccg acatgtcggg
      601 gcacgatgcg gagcggctgc accagctgat ctcgaaccac cgcctctaca cgggctcgac
      661 ccgcgccaag gagatcctgg acaattgggc cgagtaccgg caccgcttcg tcaaggtgat
      721 gcccgtcgag taccggcggg cgcttcgcga gatcgaggaa tcgcagcgca tcgccagcgt
      781 cgcggcggag tgatctcagc cgtcatcctc gggcggcgcg cagccgcgac ccgaggatct
      841 cgacgtctaa tgcgccggtc ggcacgggat ggccgggtca agcccggcga tgacgggaac
      901 gataaggacg atttggccgg gcggtgcccg gccatgacat gagagtgaca tgggcaaggt
      961 aacgggtttc ctcgagatcg accggcgcga ccgcaagtac gcgcccgcgt ccgatcgcat
     1021 ccggcactac cgcgagttcg tcatcccgct cggggccgag gcgacgcgcg accaggcggc
     1081 gcgctgcatg gaatgcggca tcccgttctg tcacacgggc tgcccggtca acaaccagat
     1141 cccggacttc aacgacctcg tctacaacga cgactggcac gaggcgctgc ggaacctgca
     1201 gtcgaccaac aacttcccgg agttcaccgg ccgcgtctgc cccgccccgt gcgaggcgtc
     1261 gtgcacgctg aacctcgagg actcacccgt caccatcaag acgatcgaat gcgccatcgc
     1321 cgaccgcggc tggcaggaag gctggatcgt tccggagccc gccgagcacc agacgggcaa
     1381 gcgggtcgcg gtgatcggcg ccggtccggc ggggcttgcc gcggcgcagc agctcgcgcg
     1441 cgtcgggcac gaggtccatg tctacgagaa gcacgcccgc gccggcggcc tgctgcgcta
     1501 cggtatcccc gacttcaaga tggagaagca cctcgtcgag cgtcgcgtcc gccagatgga
     1561 ggcggaaggc gtggtcttcc actacggcgt ccacgtcggt cacaccatgc cgggcaagca
     1621 gctcgtcgac gagtacgacg ccgtgctcct gtccggcggt gccgagaagc cgcgtgacct
     1681 cgccatcgaa ggccgcgatc ttggcggcat ccacttcgcc atggacttcc tgccgcagca
     1741 gaaccgccgc gtctcgggcg agaacaccga cgtcgccgac ccgatcctcg cgaccgccaa
     1801 gcacgtcgtg gtcatcggcg gcggcgacac cggctcggac tgcatcggca cgtcggtgcg
     1861 gcagggtgcg ctctcggtga cccagctcga gatcatgccg cagccgcccg tgaaggagaa
     1921 caagctcctc acctggccgg actggcccct caagatgcgg acgtcctcga gccacgagga
     1981 aggcgccgag cgcgacttcg ccgtcaccac aacgcgcttc tcgggcaaga acgggcgcgt
     2041 gacgacgctg cattgcgcgc gcgtcgacgg cgccttcaag ccgatccccg gcaccgagtt
     2101 cgagctgaag gccgacctcg tgctcctggc catgggcttc gtgagccccg tgcaggaagg
     2161 gctattgtcc gagctcgggg tggagttcga cccgcgcggc aacgtcaagg ccgacacgcg
     2221 cgcctatcgc acctccctgg acaaggtatt ctcagccggg gacatgcgcc gcggccaatc
     2281 cctcatcgtc tgggccatcc gcgaaggccg ccaggccgcc cgcgccatcg acgaatacct
     2341 caccggaagc acagtcctcc cgagctgagg cgggcggtcg ccctcacccg gtcggcttcg
     2401 ccgactcgac ctctcccgca cgcgggagag ggg
//
LOCUS       DASQWN010000524         4234 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_789584, whole genome shotgun sequence.
ACCESSION   DASQWN010000524 DASQWN010000000
VERSION     DASQWN010000524.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 4234)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4234)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4234
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_789584"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..620)
                     /locus_tag="VE686_09790"
     CDS             complement(<1..620)
                     /locus_tag="VE686_09790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012253607.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="shikimate kinase"
                     /protein_id="HYY84773.1"
                     /translation="MTEAANPESLFLAELGQRVRTMRAVRGMSRKVLSRVSGVSERYI
                     AQLESGQGNASVILLRRLSHAMGARLEDLVVGEAAPEWLVVRDLLKTAGAERIARAKE
                     ILSGTASHGAEDESSARRRVALIGLRGAGKSTLGRIAAERLGWAFVELNREIENENGL
                     SVPEIFALYGQEGYRRLEQSALRKLVERPGPMVLATGGGIVAEPLT"
     gene            735..2297
                     /locus_tag="VE686_09795"
     CDS             735..2297
                     /locus_tag="VE686_09795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011083897.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016405 - CoA-ligase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="benzoate-CoA ligase family protein"
                     /protein_id="HYY84774.1"
                     /translation="MREETYNAVAELLDRNVAEGRGNKVAFIDRRRRLTYSELQADSC
                     RVASLLTKLGVRREQRVAMIMLDTVEFPMVFLGAMRAGAVPVPLNTLLTPEQYAYMLK
                     DSRARALFVSAPLLKVIEPILPRLSDLEAVVGVGEGAASPHADFARALADMPATFDTV
                     QTHPDEPAFWLYSSGSTGMPKGVKHVHTSLMATARLFGQGVLGMREDDVVYSAAKLFF
                     AYGLGNALTFPMSVGATAVLLDERPTPAAVLDLFRREQPTIFCGAPTGYAAVLADPAF
                     ASDTGSKRLRLCVSAGEALPEHLGLSWKERFGVDIIDGIGSTEMLHIYVSNAPGDIRY
                     GTTGRPVPGYEVRLVGESGGDVPDGEIGELLVRGPSAAEGYWNQRDKSRSTFEGHWMR
                     TGDKFVRDADGRYTYCGRADDMFKVSGIWVSPFEVESALISHPAVLEAAVVPAGDKDG
                     LLKPKAFVVLKEAAGESDLDGALKEHVKASVGPWKYPRWIEVVDSLPKTATGKIQRYK
                     LRQADAQDGGHA"
     gene            2294..3115
                     /locus_tag="VE686_09800"
     CDS             2294..3115
                     /locus_tag="VE686_09800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002714208.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HYY84775.1"
                     /translation="MTRLASSGMLGIGSARLEYRMIGPQPDEAATIVMLHEGLGSVAQ
                     WGTFPDDLARTTGAGVFVYSRAGYGASSDVSLPRPVTYMHDEAREVLPRVLDAIGFRR
                     GLLVGHSDGASIAAIYAGSVQDHRVRGLSLIAPHFVVEDVSIASIEEAKRAYESGDLK
                     AKLARYHQDVDSAFRGWNDVWLDPAFRAWDISEELAYIRVPVQIVQGAADQYGTLRQV
                     EIAQEECYCPVDVTVLPGVGHAPHREAPDAALKAIAEFANRVLKVHGEGELRRAA"
     gene            3112..3597
                     /locus_tag="VE686_09805"
     CDS             3112..3597
                     /locus_tag="VE686_09805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015689168.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF309 domain-containing protein"
                     /protein_id="HYY84776.1"
                     /translation="MSAPALDLPRWAYLPGKTPAPDRAPLEHAKALVPKAYENGVDAR
                     DPAFRYGLALHDAGFFWEAHEVWEAVWKAAPKNGCDRLVLRALIQLANAKLKLRMGRA
                     RAAARLVEEARAELAEAGRRGCAAETGGLAAASLEELMTQVAVSLDVVAAGPLAGLFR
                     A"
     gene            3688..>4234
                     /locus_tag="VE686_09810"
     CDS             3688..>4234
                     /locus_tag="VE686_09810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014491284.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-CoA hydratase-related protein"
                     /protein_id="HYY84777.1"
                     /translation="MAGEERRLANGAERIDFQTEPSRYKHWKLSVEGDVATLTMDVDE
                     NGGLFEGYQLKLNSYDLGVDIELADAVERLRFEHPEVKTVVMRSAKNRVFCAGANIRM
                     LAGSPHAHKVNFCKFTNETRNGIEDSSQNSGQRYLCVVNGTAAGGGYELALAADHIML
                     VDDGSASVALPEVPLLAVLPGT"
BASE COUNT          679 a         1453 c         1464 g          638 t
ORIGIN      
        1 aacgtgaggg gctcggcgac gatgccgccg cccgtcgcga gcaccatggg ccccgggcgc
       61 tcgaccagct tgcgcagggc gctctgctcg agccggcgat agccttcctg gccgtagagg
      121 gcgaagatct ccggcaccga gaggccgttc tcgttctcga tctcgcggtt gagctccacg
      181 aaggcccagc cgaggcgctc tgccgcgatg cgtccgaggg tcgacttgcc ggcgccgcgc
      241 aggccgatca gcgcgacgcg ccgccgcgct gaggattcgt cctcggcacc gtggctggca
      301 gtgccggaca ggatctcctt ggcgcgcgcg atccgctctg ccccggccgt cttcaagaga
      361 tcgcggacga cgagccattc gggggccgct tcgccgacca cgaggtcctc gagccgggct
      421 cccatggcgt gcgaaaggcg gcgcaggagg atcaccgagg cgttgccctg gccggactcg
      481 agctgcgcga tgtagcgctc cgaaacgccc gacacccgcg acagcacctt gcgcgacatg
      541 ccgcgcacgg cgcgcatggt gcggacacgc tgccccagct cggcgaggaa caggctttcg
      601 ggattggcgg cttcggtcat gagcgcggaa aaatagtgcg ttcccggatt gacagcaaga
      661 atcccgcggc cgcttatctg aactataatg cacgaccgca tggccgcgag cgcggccgcg
      721 tacgggagag cgggatgcgg gaggagacct acaacgccgt cgccgagctt ctcgaccgca
      781 acgtcgcgga agggcgcggc aacaaggtcg ccttcatcga tcgacgccgc cggctcacct
      841 atagtgagct ccaggccgac agctgtcgcg tcgcgagcct cctgacgaag ctcggtgtcc
      901 gccgcgagca gcgcgtcgcc atgatcatgc tcgacacggt cgagttcccc atggtgttcc
      961 ttggcgccat gcgggccggc gccgtcccgg tgccgctcaa caccctgctc acgcccgagc
     1021 aatacgccta catgctgaag gactcgcgcg cccgcgcgct gttcgtcagt gcgccacttt
     1081 tgaaggtcat cgaaccgatt ctgccgcggc tttccgacct agaggccgtg gtgggcgtcg
     1141 gggagggcgc cgcatcgccg catgccgact tcgcccgcgc actcgccgac atgccggcga
     1201 ccttcgacac ggtgcagacg catccggacg agccggcctt ctggctctac tcctcgggct
     1261 cgaccggcat gcccaagggc gtcaagcacg tacacacgag cctcatggcg accgcgcggc
     1321 tgttcgggca gggcgtgctc ggcatgcgcg aggacgacgt ggtctattcg gccgcaaagc
     1381 tgttcttcgc ctatggtctc ggcaacgcgc tgaccttccc gatgtcggtc ggcgcgaccg
     1441 cggtactcct cgacgagcgc ccgaccccgg cagcggtgct cgacctgttc cggcgcgagc
     1501 agccgacgat cttctgcggc gcgccgaccg gctacgcggc ggtgctcgcc gaccctgctt
     1561 tcgcaagcga cacggggtcg aagcgcctgc gcctgtgtgt ctcagcgggc gaggcgctcc
     1621 ccgagcacct cggcttgagc tggaaggagc gcttcggcgt cgacatcatc gatggcatcg
     1681 gctcgaccga gatgctgcac atctacgtat cgaacgcgcc cggcgacatc cggtacggca
     1741 cgacggggcg gccggttccg ggctacgagg tgcgcctcgt gggcgagagc ggcggcgacg
     1801 ttcccgacgg cgagatcggc gagcttctgg tgcgcggccc gtcggccgcg gaaggctact
     1861 ggaaccagcg cgacaagagc cgcagcacct tcgagggcca ctggatgcgt acgggcgaca
     1921 agttcgtgcg cgatgccgac gggcgctaca cctactgcgg ccgcgccgac gacatgttca
     1981 aggtgtcggg catctgggtc tcgccgttcg aggtcgagag cgcgctgatc agccatccgg
     2041 cggtgctcga ggccgcggtc gtgccggccg gcgacaagga cgggctcctc aagccgaagg
     2101 ccttcgtggt gctcaaggag gcggcgggcg agagcgacct cgacggcgcg ctcaaggagc
     2161 acgtcaaggc gagcgtcggc ccgtggaaat atccccgctg gatcgaagtc gtcgacagcc
     2221 tgcccaagac ggcgaccggc aagatccagc gttacaagct gcgccaagcg gacgctcagg
     2281 acggaggaca tgcatgacga ggctcgcctc ctcggggatg ctcgggatcg ggtcagcccg
     2341 gctcgagtac aggatgatcg gcccgcagcc ggatgaggcg gcgaccatcg tgatgctgca
     2401 cgagggtctc ggctccgtgg cccaatgggg cacgttcccc gacgacctcg cgcgcacgac
     2461 gggcgcgggc gtgttcgtgt attcgcgcgc aggctatggc gcctccagcg acgtctcctt
     2521 gccgcggccg gtgacgtaca tgcacgacga ggcgcgcgag gtgctgccga gggtgctcga
     2581 cgccatcggc ttccggcgtg ggctcctcgt cggccattcc gacggcgcct ccatcgcagc
     2641 gatctacgcg ggaagcgtgc aggaccatcg ggtgcgcggg ctatcgctga tcgcgccgca
     2701 cttcgtggtc gaggacgtgt ccatcgcctc catcgaagag gcgaagcggg cctacgagag
     2761 cggcgacctc aaggcgaagc tcgcgcgcta ccaccaggac gtcgacagcg ccttccgcgg
     2821 ctggaacgac gtctggctcg accccgcctt ccgcgcctgg gacatctcgg aggagctcgc
     2881 ctacatccgt gtgccggtgc agatcgtgca aggagcggcg gaccagtacg ggaccctccg
     2941 ccaggtcgag atcgcgcagg aggagtgcta ctgcccggtg gatgtgaccg tgcttccggg
     3001 cgtcggacac gcgccgcacc gcgaggcccc cgacgccgcg ctgaaggcca tcgcggagtt
     3061 cgccaaccgc gtcctcaaag tccacggcga gggcgagctg cgccgcgccg cgtgagcgcg
     3121 ccggccctcg acctgccccg ctgggcctac ctgccgggca agacgcccgc gcccgaccgc
     3181 gctcccctgg agcacgccaa ggcgctggtt ccgaaggctt acgagaacgg agtcgatgcc
     3241 cgcgatcccg ccttccgcta cggcctcgcg ctgcacgacg cagggttctt ctgggaggcg
     3301 cacgaggtct gggaagcggt gtggaaagcg gcgccgaaga acggctgcga ccgtctcgtc
     3361 ctgcgtgcgc tgatccagct cgccaacgcg aagctgaagc tgcgcatggg ccgagcccgg
     3421 gccgctgcgc ggctcgtcga agaggcacgg gcggagcttg ccgaggcggg acgccgaggc
     3481 tgcgcggcgg agaccggggg cctcgccgcc gcttcactgg aggaactgat gacgcaggtg
     3541 gcggtgtcgc ttgatgtcgt ggctgcagga cctttggccg ggctcttccg cgcatgaacg
     3601 aaaatgcaca ttggcgatgc agctcgctgg acgctgcacc gactatgcat tattgtgcat
     3661 catccccgga ccggaaagtc gctcccgatg gcaggtgagg aacgcaggct cgcgaacggc
     3721 gccgagcgca tcgacttcca gaccgagccg tcgcgctaca agcattggaa gctgagcgtc
     3781 gagggtgacg tcgcgacgct gaccatggac gtcgacgaga acggcggcct gttcgagggt
     3841 tatcagctca agctgaactc ctacgacctc ggcgtcgaca tcgagctcgc cgacgccgtc
     3901 gagcgcctgc gcttcgagca ccccgaggtc aagacggtgg tgatgcgctc cgccaagaac
     3961 cgcgtgttct gcgccggtgc gaacatccgc atgctcgccg ggtcgcccca tgcccacaag
     4021 gtgaacttct gcaagttcac caacgagacc cgcaacggca tcgaggattc cagccagaac
     4081 tccggccagc gctacctctg cgtcgtcaac ggcacggcag cgggcggcgg ctatgagctc
     4141 gcgctcgcgg ccgaccacat catgctcgtc gacgacggct ccgcctcggt ggcgcttccc
     4201 gaggtgcccc tccttgcggt gctgcccggc acgg
//
LOCUS       DASQWN010000525         2246 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_95287, whole genome shotgun sequence.
ACCESSION   DASQWN010000525 DASQWN010000000
VERSION     DASQWN010000525.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2246)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2246)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2246
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_95287"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1626
                     /locus_tag="VE686_09815"
     CDS             <1..1626
                     /locus_tag="VE686_09815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012384953.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA domain-containing protein"
                     /protein_id="HYY84778.1"
                     /translation="DAIPCWIMPSWRVSEQLPGRLGAFDLVIMDEASQSDIRELPALL
                     RGKKILVVGDDKQVSPTAAFIETAKLDRLEHGFLKDMPFRTLLLPGSSLYDLAKVMFP
                     DRLVMLKEHFRCVEPIIRFSVPFYPEPLIPLRIPTAQERLDPPLVDIYVPDGRREGDK
                     LNPREARVVVDEITAFVADPEVARVPGAERWRSIGVVSLIGSKQAALINRMLVEELGE
                     EAMLRHRIACGDSATFQGNERDVVFLSMVADPTVKAAQTAMHFEQRFNVALSRARDRI
                     VLVRSVREEELNPNDLKARVIRHFREPMAGAAAPPADLEAACESDFERALLRRLTKRG
                     YRVRPQVGALGFRIDLVVEGADDRRLAIECDGDRYHGPERWADDMRRQRTLERVGWRF
                     WRCWASSFALDPDGCEADLVATLDRLGIEPLGPDAPARLYTRHRTAAPASSSTPAPRR
                     HPAKEAAVGISLGDRAALRFLDDDKVVTVTLDGARHDPVNGLAGADTPLGRALLGLGD
                     EDEGTYAEDGRERRFLVMRVETSRAAAAPGQAR"
     gene            complement(1623..1961)
                     /locus_tag="VE686_09820"
     CDS             complement(1623..1961)
                     /locus_tag="VE686_09820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018387073.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY84779.1"
                     /translation="MRNRFTTASLAAATVVLLATGAAAQPRPSTLAMSCGQARALVAS
                     RGAIVLGTGPHTYDRYVAHTGFCPHDQTTEPAFEPTRDNPQCYIGNRCIARRSEQPTG
                     DSGGGGGGMN"
BASE COUNT          308 a          822 c          779 g          337 t
ORIGIN      
        1 gacgccatcc cgtgctggat catgccgtcg tggcgcgtct cggagcagct gcccggcagg
       61 ctcggcgcct tcgacctcgt catcatggac gaggcctcgc agtccgacat ccgcgagctg
      121 ccggcgctcc tgcgcggcaa gaaaatcctt gtggtcggcg acgacaagca ggtgagcccg
      181 acggcggcct tcatcgagac cgcgaagctc gaccggctcg agcatggctt cctcaaggac
      241 atgccgttcc gcaccctgct gctgcccggc tcgtcgctct acgacctcgc gaaggtcatg
      301 ttcccggacc ggctcgtcat gctgaaggag cacttccgct gcgtcgagcc gatcatccgc
      361 ttctcggtcc cgttctatcc cgagcccctg atcccgctgc gtatcccgac ggcgcaggag
      421 cggctcgatc cgcccctcgt cgacatctac gtccccgacg ggcggcgcga gggcgacaag
      481 ctcaacccgc gcgaagcccg cgtggtcgtg gacgagatca cggcattcgt cgccgatccg
      541 gaggtggccc gcgtcccagg agccgagcgc tggcgctcca tcggcgtcgt ctccctcatc
      601 gggtcgaagc aggcggcgct catcaacagg atgcttgtcg aagagctcgg cgaagaggcg
      661 atgctgcgcc accgcatcgc gtgcggcgac agcgccacct tccagggcaa cgagcgcgac
      721 gtggtgttcc tgagcatggt ggccgatccg accgtcaagg cggcgcagac ggcgatgcac
      781 ttcgagcagc ggttcaacgt cgccctgtcc cgcgcccggg ataggatcgt cctggtgcgc
      841 tccgtccgcg aggaggaact caaccccaac gacctgaagg cccgtgtcat ccgccacttc
      901 cgcgagccca tggctggcgc ggccgcgccg ccggcagacc tcgaggcggc ctgcgagtcc
      961 gatttcgagc gcgccctcct gcgccgcctg accaagcgcg gatatcgggt gcggccgcag
     1021 gtcggcgcgc tcgggttccg catcgacctg gtggtcgagg gcgccgatga ccggaggctc
     1081 gccatcgagt gcgatggcga ccgctatcac ggccccgagc gctgggccga cgacatgcgc
     1141 cgccaacgta ccctggagag ggtcggctgg cgcttctggc gctgctgggc ctcgagcttc
     1201 gcgctcgatc cggacggttg cgaggccgac ctcgtcgcga ccctcgaccg gctcggcatt
     1261 gagcccctcg gccccgacgc tccggcgcgg ctctacacgc gccaccggac cgccgccccc
     1321 gcgtcgtcga gcacgcccgc cccgcgacgt catcccgcca aggaggcggc ggtcggcatc
     1381 tccctcggcg accgcgccgc cctccgcttc ctcgacgacg acaaggtggt caccgtcacg
     1441 ctggacggcg cgcgccacga ccccgtgaac ggcttggcag gcgccgacac gccccttggc
     1501 cgcgcgctcc tcgggcttgg cgacgaggac gaaggcactt acgccgagga cggccgcgag
     1561 cgccgcttcc tggtgatgcg ggtcgagacc tcccgggcgg cggctgctcc cgggcaggcg
     1621 cgttagttca tccccccgcc cccgcccccg ctgtcaccgg tcggctgctc gctccggcgc
     1681 gcgatgcacc ggttgccgat gtagcactgc ggattgtcgc gggtcggctc gaaggcgggc
     1741 tccgtcgtct ggtcgtgcgg gcagaagccg gtatgcgcca cgtagcggtc gtaggtgtgg
     1801 ggaccggttc cgagcacgat agcgccgcgc gaggctacga gggcccgggc ctggccgcag
     1861 gacatggcga gggtcgaggg gcggggctga gcggcggcgc cggttgcaag aagcacgacc
     1921 gtcgcggcag ccaacgatgc cgtcgtgaag cggtttctca tgaagacctc gtcgggcgtc
     1981 ccccgacgat atcgtgcacc tgacgttgcc gccagcggcc gggccggtcc cgcgccggag
     2041 ccgcggctgg attatgctcc cgctttcgcg catgctgcga cggctctgcg aacacccggg
     2101 ggcgcattcg catgcggcag tggactaagg cgttgcgctt gagctcgcgc gctggtcgcg
     2161 aacttggccg ctgcgccgcc gcccgacgat gagcggcggg acggcgatcg cggccgacgt
     2221 ggcgcccctc gggcgccctc gtacgc
//
LOCUS       DASQWN010000526         5920 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1383648, whole genome shotgun sequence.
ACCESSION   DASQWN010000526 DASQWN010000000
VERSION     DASQWN010000526.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 5920)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5920)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5920
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1383648"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1603)
                     /locus_tag="VE686_09825"
     CDS             complement(<1..1603)
                     /locus_tag="VE686_09825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003606390.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme lyase CcmF/NrfE family subunit"
                     /protein_id="HYY84780.1"
                     /translation="MLIEAGHYALALALGLSLLQFAVPLWGSRVSDRVLMGVAAPSAL
                     GVFALVAFSFGTLVYAYAVSDFSVANVVENSHSTKPFIYKLTGVWGNHEGSMLLWILI
                     LTLFGAVVALARNAIPARLQATTLAVQGSVSFTFTFFILATSNPFTRLSPAPFEGQDL
                     NPILQDPGLAIHPPLLYVGYVGFSISFSFAMAALIEGRIDAVWARAVRPWTLLAWCFL
                     TVGIAMGSYWAYYELGWGGWWFWDPVENASLMPWLAGTALVHSTVVMEKREALKVWTI
                     LLAILTFSLSLLGTFLVRSGVLTSVHSFASDPTRGVFILAILVAFIGGSLALFAARAP
                     MLRQGGIFAPVSREGALVLNNLLLATACATVFVGTLYPLALEAVTGDKISVGAPFFNL
                     TFLPLIAPLLLLVPFGQTLAWKRGDPLATGQRLMAAFGLALALALVLVAANFGGPVLA
                     PIGIGLGAFLVLGSANEIVTRSWRRGQGIGLTLTKAAGLPRSTWGTALAHSGVGLTVI
                     GIAAAAWGVEALGTLKPGEQLSAGPY"
     gene            complement(1611..2066)
                     /gene="ccmE"
                     /locus_tag="VE686_09830"
     CDS             complement(1611..2066)
                     /gene="ccmE"
                     /locus_tag="VE686_09830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011925751.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0020037 - heme binding [Evidence IEA];
                     GO_process: GO:0017004 - cytochrome complex assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c maturation protein CcmE"
                     /protein_id="HYY84781.1"
                     /translation="MTRKQRRLTLIASALGVLAIALGLVLYAMRDSIVFFYTPATVAE
                     KSIKPGARFRLGGLVKEGSVSRAVGQDIAFEIVDAQRSVRVQYRGLLPDLFREGQGVV
                     AEGMLDGSGVFKADTVLAKHDETYMPREVADALKKQGHWQGEQKPVATR"
     gene            complement(2063..3172)
                     /gene="ccmI"
                     /locus_tag="VE686_09835"
     CDS             complement(2063..3172)
                     /gene="ccmI"
                     /locus_tag="VE686_09835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012334164.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051082 - unfolded protein binding
                     [Evidence IEA];
                     GO_process: GO:0017004 - cytochrome complex assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="c-type cytochrome biogenesis protein CcmI"
                     /protein_id="HYY84782.1"
                     /translation="MTLWIILALMTGAAVLAVLWPLSQHAHRDPPHDPDSQFYRDQIA
                     EIERDQARGLISPPDAEAAKAEAARRLLHAAAVGEAQTEAFGEPALRRRRAASALALS
                     AIPLLALAAYGALGSPQLPAQPRAARLQSNPERLDMAAALAKVEAHLAASPEDGRGWE
                     VVAPVYLRLGRHDDAVKAYAAALRLLGETGERVSAYGEALVTAARGVVGAQARGAFER
                     AVALDPMNPTPQFYLARAAEQDGEYVVARTRYEAMLASAPEEAPWVALVRQQLAQLDA
                     RDKAAALAALPAAERESAVRGMVDHLATRLESGSGTPEDWQRLVRSYAVLGDRDKAAA
                     ALAKARAALAPDQTAMAGIDALAGDLALSSDDRKP"
     gene            complement(3254..4654)
                     /locus_tag="VE686_09840"
     CDS             complement(3254..4654)
                     /locus_tag="VE686_09840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009493925.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HYY84783.1"
                     /translation="MTPLRRLRVVLAGRSIAVRLAAFALFWSMLILLSAGAILSAVYR
                     EATERAYDQRLLVYATDLASALVAPGDPDRKDLGRVADPRFELPLSGWYWQVGRPGAP
                     LRDIRASKSLFGGDIPSLVAEGGDQRIGEVRKGYRRGPEDRFLRILERDVDLGEDGRF
                     VIRVAGPADDIDADVRRFTFALTVTFTLLGLLLGLTTLLQIRFGLRPLTVLRRAVGAV
                     RRGEADRIAGRYPQDLAPLARELNLLLETNREILERARTQVGNLAHALKTPLSVIVNE
                     VDHAPTELAGKVREQAALMRDQVDYYLNRARAAALAGTLGALTEVAPVVDGLSRTFSK
                     IHMGRQLAIEDRVAPGARFRGEGQDLEEMVGNLVDNACKWARSRVVVAAEVVARDGVA
                     SLQVTVDDDGPGLPEPAREEVLRRGRRLDETKPGSGLGLSIVADLAGLYRGHLHLEAS
                     PLGGLRAVLVLPGDAS"
     gene            complement(4651..5319)
                     /locus_tag="VE686_09845"
     CDS             complement(4651..5319)
                     /locus_tag="VE686_09845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012115153.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HYY84784.1"
                     /translation="MRLLVIEDDKTLNRQIVSALEHAGYAVDHALDGEDGQFLGETEP
                     YDAVVLDLGLPKVDGVSVLNAWRRAGRKMPVIILTARDRWSDKVQGFDAGADDYVTKP
                     FHMEELLARLRALLRRATGHATSELSCGPVRLDTRSGRVSVDGDPVKLTSHEYRLLSY
                     LMHHAGRIVSRAELTEHLYDQDFDRDSNTIEVFVGRLRKKLGVELIQTVRGLGYMVEA
                     RPDS"
     gene            complement(5350..5655)
                     /locus_tag="VE686_09850"
     CDS             complement(5350..5655)
                     /locus_tag="VE686_09850"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY84785.1"
                     /translation="MLPGIMLVSAVASAPQAQGAPLALHCMAPREMQDILADQKLVAP
                     TMAVVTARHALQGADVLRADLCRDPDGLIYVIMALRKDGRVVQVTIDAPSGKLKSVR"
     gene            complement(5734..>5920)
                     /locus_tag="VE686_09855"
     CDS             complement(5734..>5920)
                     /locus_tag="VE686_09855"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY84786.1"
                     /translation="MDAGVFSAVLALLFGLCGVRAWEKERGVARDSWTVPSAAGALVE
                     VGAAIIAGGTGARRERR"
BASE COUNT         1039 a         1998 c         2057 g          826 t
ORIGIN      
        1 aatacggccc tgcgctaagt tgctcgccgg gcttgagggt ccccagcgcc tccacgcccc
       61 atgcagccgc ggcgataccg atcacggtca gcccgacgcc cgaatgtgcg agggccgtgc
      121 cccaggtcga gcgcggcagg cctgccgcct tggtgagcgt caagcctata ccctggcccc
      181 tgcgccacga ccgcgtcacg atctcgttgg cggacccgag caccaggaat gcgccaaggc
      241 cgatcccgat gggcgccagc accgggcccc cgaaattcgc ggccaccagg acgagggcga
      301 gcgcaagcgc aagcccgaac gcggccatga ggcgctgccc ggtcgcaagc gggtcgcccc
      361 gcttccatgc gagcgtctgg ccgaagggaa cgaggagcag cagcggcgcg atcagcggca
      421 ggaaggtgag gttgaagaac ggcgcaccga cggagatttt gtcgcccgtc acggcctcga
      481 gcgcgagggg atagagcgtg ccgacgaaca ccgtcgcgca ggccgttgca aggaggaggt
      541 tgttgaggac gagagcgccc tcgcgcgaga ccggggcgaa gatcccgccc tggcgcagca
      601 tgggcgcacg cgcagcaaac agcgccaacg agccgccgat gaatgcgacg aggatggcga
      661 ggatgaagac ccctcgcgtg ggatcgctcg cgaacgaatg gacggaggtg agcacgcccg
      721 agcggaccag gaacgtgccg agcagcgata gcgagaaggt caggatggcg aggaggatgg
      781 tccagacctt cagcgcctcg cgcttttcca tgacgacggt ggagtgcacg agagcggtgc
      841 cggcgagcca cggcatcagc gaggcgttct cgacggggtc ccagaaccac cagccacccc
      901 acccgagctc gtagtaggcc cagtacgagc ccatcgcgat tccgacggtg aggaagcacc
      961 aggcgagcaa tgtccatggg cgaaccgcgc gagcccacac ggcgtcgatg cggccttcga
     1021 tcagcgccgc catcgcgaag gagaacgaga tcgagaaccc gacgtagccg acgtaaagga
     1081 gcggcggatg gattgcgagg cccggatcct gcaggatcgg gttgagatcc tgcccctcga
     1141 agggcgccgg gctgaggcgt gtgaaggggt tggaggtcgc gaggatgaag aaggtgaacg
     1201 tgaagctcac cgagccctga acggcaagcg tcgttgcttg aagccgggcc gggatggcgt
     1261 tgcgcgcgag cgccaccacg gccccaaaca gggtcaggat gaggatccag aggagcatcg
     1321 aaccctcatg gttcccccag acgccggtca gcttgtagat gaacggcttc gtcgagtgcg
     1381 agttctcgac gacgttggcg accgagaagt ccgagacggc gtacgcatac acgagcgtcc
     1441 cgaacgagaa ggccacgagc gcgaaaaccc cgagcgccga gggcgctgcg actcccatga
     1501 ggacgcgatc gctcacgcgc gatccccaca gcgggacggc gaactgaagg agcgagaggc
     1561 cgagcgcgag cgccaacgcg taatgccccg cctcgatcag catgggagcc tcatcgcgta
     1621 gccaccggct tctgctcgcc ctgccagtga ccctgcttct tgagcgcgtc ggcgacctcg
     1681 cgtggcatgt aggtctcgtc gtgcttggcc agcaccgtgt cggccttgaa cacgccagac
     1741 ccatcaagca tgccttcggc gaccacgccc tgtccttccc ggaacaggtc cggcaggagg
     1801 cccctgtact gcacgcgcac ggaccgttgc gcgtccacga tctcgaaggc gatatcctga
     1861 cccaccgcgc ggctgacgct gccttccttg acgaggccgc cgaggcggaa ccgggcgcca
     1921 ggcttgatgc tcttctcggc taccgtcgcg ggcgtgtaga agaaaacgat gctgtcgcgc
     1981 atggcgtaga gcaccagccc gagggcgatc gcgagcacgc cgagcgcaga agcgatgagg
     2041 gtaagccggc gctgcttgcg ggtcacggct tgcggtcgtc ggaggaaagc gcgaggtcgc
     2101 ccgcaagcgc atcgatgccc gccatcgcgg tctggtcagg cgcaagtgcc gcacgggcct
     2161 tggcgagcgc ggcagcggcc ttgtcgcggt ccccgagcac ggcataggag cgcacgagcc
     2221 gctgccagtc ctcgggagtg ccgctgcccg attcgagacg ggtggcgagg tggtcgacca
     2281 tgccgcgaac ggcgctctcc cgctccgccg ccggcagggc cgcgagtgct gccgccttgt
     2341 cgcgcgcgtc gagttgagcg agttgctggc gcacgagcgc gacccacggc gcctcttcag
     2401 gcgcggaggc aagcatggcc tcgtatcgcg ttctcgcgac cacgtactcg ccatcctgct
     2461 ccgccgcgcg ggcgagatag aactgcggtg tcgggttcat gggatccagc gcaaccgcgc
     2521 gctcgaacgc cccccgggcc tgcgcgccga cgaccccgcg agcggccgta accagtgcct
     2581 cgccgtaagc cgacacacgc tctcccgtct caccgagcag acggagcgcg gccgcgtagg
     2641 ccttcacggc atcgtcatgg cggccgagcc ggaggtacac gggggcgacg acctcccatc
     2701 cgcgtccatc ttccgggctc gccgcgagat gcgcttcgac tttcgcgagc gccgcggcca
     2761 tgtcgagccg ctccgggttg gattggaggc gcgcggctcg cggctgcgcc ggaagctgcg
     2821 gcgagccgag ggcgccatag gccgccaggg cgagcagcgg aatggccgag agtgcgaggg
     2881 ccgaggcggc gcgacggcgc cgcagggcgg gctcaccgaa ggcttcagtc tgcgcctccc
     2941 cgactgctgc ggcgtgcagc agccggcgcg ccgcttcggc cttcgcggct tctgcgtcgg
     3001 gcggggaaat caggccgcgt gcttgatcgc gctcgatttc ggcgatctgg tcgcggtaga
     3061 actggctgtc gggatcgtgc ggaggatcac ggtgcgcgtg ctgcgaaagc ggccagagca
     3121 cggccagcac agccgccccc gtcatcagcg cgagaatgat ccacagcgtc atcggcaatg
     3181 atgtaccgcg cacgcccgcg cgaaacgatg ccggaatgcg gcgacacggt gacgcgcgaa
     3241 ccgccaccgc tggtcacgac gcgtctcccg ggagaaccag aacggcgcgc aaaccgccca
     3301 ggggcgatgc ctcgaggtgc aggtggccgc gataaagtcc cgcgaggtca gcgacgatcg
     3361 acaagccgag gcccgaaccg ggcttcgtct cgtcgagacg gcgtcctcgg cgtagcacct
     3421 cctcgcgtgc aggctcgggc aggcccggcc catcgtcgtc cacggtaacc tgtaagctgg
     3481 ccacaccgtc tcgagccacg acctcggcgg cgacaaccac gcgcgatctt gcccacttgc
     3541 aggcattgtc gacgaggttg ccgaccattt cctcgagatc ctgcccctcg ccgcggaagc
     3601 gggcgccggg tgcgacgcga tcctcgatcg cgagctgccg gcccatgtgg atcttactga
     3661 aggtgcgaga caaaccgtca actaccgggg cgacctcggt cagtgcccca agggtcccgg
     3721 cgagagctgc tgcgcgcgcg cgattgagat agtagtcgac ctggtcacgc atcagggccg
     3781 cctgctcccg caccttgccg gcgagctccg tcggcgcgtg gtcaacctcg ttgacgatga
     3841 cgctgagcgg cgtcttgagg gcgtgcgcta ggtttccgac ctgggtgcgg gcccgctcga
     3901 ggatctcgcg gttcgtctcg agcagcaggt tcagctcgcg ggcgagcggc gccaggtctt
     3961 gcggataccg ccccgcgatg cggtcggcct cgccgcgccg gacagccccg acggctcgcc
     4021 gtagaaccgt gagcggacgc aggccgaaac ggatctgcag cagggtcgtc aggccgagga
     4081 gcaatccgag cagggtgaag gttacggtga gggcgaaggt gaaccgacgc acgtcggcat
     4141 cgatgtcatc ggccgggccg gcaacgcgga tgacgaaccg accgtcctcg ccaaggtcta
     4201 cgtcccgctc gagtatgcgc agaaagcgat cctcggggcc gcggcgatac cccttacgaa
     4261 cttcaccgat gcgctgatcg cccccctcgg cgacgaggga gggaatgtcg ccgccgaaca
     4321 gcgacttcga ggcgcggatg tcgcgcaacg gggcgcccgg ccgcccgacc tgccagtacc
     4381 agcccgagag cggcagctcg aatcgtgggt ccgcgacgcg cccgagatcc ttacggtccg
     4441 ggtcgcccgg ggccacaagc gcggatgcga gatccgtcgc atagacaagc aggcgctgat
     4501 cgtaggcgcg ctccgtcgcc tcccggtaca cggcagacag tatagcgccg gcactgagca
     4561 ggatcagcat gctccagaac agcgcgaatg cggccagacg aaccgcgatc gaccggcccg
     4621 caagaacgac cctcagtcgg cgcagcggtg tcacgagtcg ggtcgggcct cgaccatgta
     4681 gccgaggccg cgaacggttt ggatcagctc cacgccgagc ttcttgcgca ggcgccccac
     4741 gaacacctcg atggtgttcg agtcccggtc gaaatcctga tcgtacaggt gctcggtcag
     4801 ctcggcccgg gagacgatgc ggccggcgtg gtgcataagg tacgacagaa gccggtattc
     4861 gtgcgaggtt agcttcacgg gatcaccgtc cacgctcacc cggcccgagc gggtgtcgag
     4921 gcgcacgggt ccgcaggaaa gctcgctcgt agcgtgcccg gttgcacggc gaagaagggc
     4981 gcgcaggcga gccagcagct cctccatgtg gaacggcttc gtgacgtagt catccgcgcc
     5041 ggcatcaaag ccctggacct tgtcgctcca gcggtcgcgc gcggtaagga tgatgacggg
     5101 catcttgcgg ccggcgcggc gccaggcgtt caggaccgac acgccgtcga ccttgggcag
     5161 tccgagatct aggacgaccg cgtcgtacgg ctctgtctct cccaggaact gcccgtcctc
     5221 accgtcgagc gcgtggtcga ccgcgtagcc ggcgtgctcc agcgccgaca cgatctggcg
     5281 gttcagggtc ttgtcgtcct cgatcacgag aaggcgcacg ggctggcttt cctcttgtgc
     5341 tttggtccgc tagcggacgg atttcagctt gccggacggg gcgtcgatcg tcacctgcac
     5401 cacccggcca tccttgcgca gagccatgat gacgtagatc agcccgtcgg ggtctcggca
     5461 gagatccgca cgaagcacgt cggcgccctg cagggcgtgc cgggcagtca ccaccgccat
     5521 ggtcggggcc acgagcttct ggtccgccag gatgtcctgc atctcgcgcg gcgccatgca
     5581 atgcagcgcc agcggcgcac cctgcgcctg cggagcgctg gccacggcag agaccagcat
     5641 aatcccgggg agcaaggcgc gcattcccgt caagctcgca gccacggact gaatgactgc
     5701 tgaatatggg tgcccgcggc cggaccggga gggtcagcgc ctctccctgc gggcgcccgt
     5761 acccccggcg atgatggccg ccccgacctc gacgagcgct ccggcggccg agggcacggt
     5821 ccagctgtct cgcgcgacac cgcgctcctt ctcccaggct cggaccccgc agaggccgaa
     5881 gaggagggcg agcactgccg agaacactcc agcgtccata
//
LOCUS       DASQWN010000527         2022 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1185713, whole genome shotgun sequence.
ACCESSION   DASQWN010000527 DASQWN010000000
VERSION     DASQWN010000527.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2022)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2022)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2022
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1185713"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(121..312)
                     /locus_tag="VE686_09860"
                     /pseudo
     CDS             complement(121..312)
                     /locus_tag="VE686_09860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012334834.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
     gene            complement(519..794)
                     /locus_tag="VE686_09865"
     CDS             complement(519..794)
                     /locus_tag="VE686_09865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012334833.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1153 domain-containing protein"
                     /protein_id="HYY84787.1"
                     /translation="MTEAYRPRVKYVIGPDGSPLTIADLPPSNTRRWVIRRKAEVVAA
                     VRGGLLSLDEACQRYTLTTEEFLSWQSSIDEHGLAGLRTTRIQHYRQ"
     gene            1005..>2022
                     /gene="mnmA"
                     /locus_tag="VE686_09870"
     CDS             1005..>2022
                     /gene="mnmA"
                     /locus_tag="VE686_09870"
                     /EC_number="2.8.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018044449.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA];
                     GO_function: GO:0016783 - sulfurtransferase activity
                     [Evidence IEA];
                     GO_process: GO:0008033 - tRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 2-thiouridine(34) synthase MnmA"
                     /protein_id="HYY84788.1"
                     /translation="MLNSLDLPAAPCDTRVVVAMSGGVDSSVVAALLKREGYDVVGIT
                     LQLYDHGAAAHRAGACCAGQDIHDARRVAEVVGIPHYVLDYEARFREAVIDRFAASYL
                     SGETPIPCVECNRTIKFRDLLATAKELGADVLATGHYVASRALPDGRRALFRAADPDR
                     DQSYFLYATTPEQLAMLRFPLGELPKEETRALARELGLSVAEKPDSQDICFVPQGRYS
                     DVIERLKPGAAQTGEIVHLDGRVLGRHAGIIHYTVGQRRGLGVAAGEPLYVVRLDAAR
                     SRVVVGPREALATRTIHIADVNWLGNQALADIGPEGLEVAVRVRSTREPRPAVLRPRA
                     DGAAI"
BASE COUNT          298 a          717 c          711 g          296 t
ORIGIN      
        1 ggttggccca gggctcggag gaaagcgacg gcgactccga ccggaccgga cggcgggacg
       61 ccgagcggag ccggcgccgg acgcgctcct accgctgggg cccccacggc tgagccggtc
      121 tcacgctccc gggcggcggt cctgcccggc ctgggcaacc gcgaggccca gggccgcgta
      181 gtcggacagc ttgttgcgca aggtgcggat cgagatgccg agaagggccg ccgcgcgggt
      241 ccggttgccc tggcaatggt cgagcgtatc gaggatgagc tgacgctcga ggtcggcgac
      301 ggtgcggccg acgaagctgt gggtgagtgc cggcccgatg cccccggccg tgcggatcgt
      361 gcttgcagcc gctccgttca cgcgcgttcc gcctccccgt tgcgcagccc cgttgccgcg
      421 accccgccca agacttcgaa gccaatgact tcgcccgggc atggttaggg ttcggttaag
      481 cgcaggcggg ggagacgggg gccgtgcggc gcgcccggct actggcggta atgctggatg
      541 cgcgtggtgc gcaggcccgc gagcccatgc tcgtcgatgg acgactgcca gctgaggaat
      601 tcctcggtgg tgagggtgta gcgctggcac gcctcgtcca ggctcagcag accgccacgc
      661 acggccgcga cgacctccgc cttgcggcgg atgacccagc ggcgggtgtt cgagggcgga
      721 aggtccgcga tggtcagagg gctgccatcg ggcccgatca cgtatttaac cctcgggcga
      781 taggcttcgg tcatagcatt acgctcacac actctcgact gaccatgtcg agaacgaccc
      841 taggaccacg cacttaagat ttgcctaaac ggacagtgcg aatccgaccg ccttgcgcag
      901 agggatgcgc cccggactgg cagaacgcgg gggcgctcgc tataaatggg gtaactcctc
      961 gcgcaacgac ttcggcgccg acccccctgt cggcgggacc ctccatgctc aacagcctcg
     1021 accttccggc cgctccctgc gacacgcggg tcgtcgtcgc catgtcgggc ggcgtcgact
     1081 cctcggtcgt ggcggcgctc ttgaagcgcg agggctacga cgtcgtcggc atcacgctgc
     1141 agctatacga ccatggggcg gcggcacacc gggccggtgc gtgctgcgcc ggccaggaca
     1201 tccacgatgc ccggcgcgtc gcggaggtcg tcggcatccc gcactacgtc ctcgactatg
     1261 aggcgcggtt tcgggaggcg gtcatcgatc gcttcgccgc gagctatctg tcgggcgaga
     1321 cgccgatccc ctgcgtcgag tgcaaccgca cgatcaagtt ccgcgacctc ctcgccaccg
     1381 ccaaggagct cggcgccgac gtgctcgcga ccggccacta cgtcgccagc cgggcgctgc
     1441 cggacggccg gcgcgcgctc ttccgcgccg ccgatcccga ccgcgaccag agctacttcc
     1501 tgtacgccac cacgcccgag cagctcgcca tgctgcgctt cccgttaggc gaactgccga
     1561 aggaggagac ccgggccctg gcgcgcgagc tcggcctgtc cgttgccgag aagcccgaca
     1621 gccaggacat ctgcttcgtg ccgcagggcc gctacagcga cgtcatcgag cgtctgaagc
     1681 ccggagcggc gcagacgggc gagatcgtgc atctcgatgg acgagtcctc ggccgccacg
     1741 ccggcatcat ccactacacg gtcggccagc ggcgcggact cggcgtggcg gcgggcgagc
     1801 ctctctacgt ggtccggctc gatgcggccc ggtcgcgagt cgtggtcggt ccgcgcgagg
     1861 cgctggccac ccgcaccatc cacatcgccg acgtcaactg gctcggcaac caggcgctcg
     1921 ccgacatcgg cccggagggg ctcgaggtcg ccgtaagggt gcgctccacc cgggagccgc
     1981 ggccggccgt gctgcgccct cgtgctgacg gcgccgcgat cg
//
LOCUS       DASQWN010000528         5452 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_243908, whole genome shotgun sequence.
ACCESSION   DASQWN010000528 DASQWN010000000
VERSION     DASQWN010000528.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 5452)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5452)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5452
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_243908"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            165..1010
                     /locus_tag="VE686_09875"
     CDS             165..1010
                     /locus_tag="VE686_09875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020186335.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="EamA family transporter"
                     /protein_id="HYY84789.1"
                     /translation="MEPYVFAAVLAAAAMHAGWNSFVKVSLEPLLAMTLISAMGGLAA
                     VPLLIWFGWPKADAWPWLIGSVVVHLAYYGALGEAYRRADMSQIYPIARGGAPLLTAV
                     VSRLFVTEPISALALTGIAVLGSGVALMSVLGRRRGAAFDGAAVAFALLTAVIICAYT
                     IIDGIGARTAGDPHAYSAALFVLDGLPLPLFILWRRGLSGLAPARKFLGRGLAGGLMS
                     LGSYWIAIWAMTVAPIALVAALRESSVLWAAVIAVVFLKEPVVPARAIAAAMILCGLV
                     LIRAG"
     gene            1055..2026
                     /locus_tag="VE686_09880"
     CDS             1055..2026
                     /locus_tag="VE686_09880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015928226.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0008757 - S-adenosylmethionine-dependent
                     methyltransferase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
                     /protein_id="HYY84790.1"
                     /translation="MSVSRTIRSSGDLLADRRYGYADAALTQGEFAAAADLALQVLEL
                     APDYGPAHALLGRARAGLADRDGAVEALSRALACDPDDALGVRLDLARLGALAPESAI
                     TPGYVRALFDDYAPRFDRHLVRSLDYRGPELIHAAVHRAATDLVRPARFARMLDLGCG
                     TGLVGRAFADHAGLIEGVDLSPGMLAQARRTRAYAALHEGELVTALRAFPDDAFDLVT
                     AADVLVYMSALEPVFGEVRRVVAPRGLFAFTVEACAGADVLLGDGGRYAHSRAYLRRL
                     AADAGFEVARLDEVSTREDRGEAVPGFLAVLAAPRRRGAPDGGRPAG"
     gene            2081..4615
                     /locus_tag="VE686_09885"
     CDS             2081..4615
                     /locus_tag="VE686_09885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012455218.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0016818 - hydrolase activity, acting on
                     acid anhydrides, in phosphorus-containing anhydrides
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ligase-associated DNA damage response DEXH box
                     helicase"
                     /protein_id="HYY84791.1"
                     /translation="MPERFQAWFASRRWTARPHQLALIEHAAAGRSALLVAPTGAGKT
                     LAGFLPTLIELAGPSPGRRLPAATRPLPQAGEVKRGLHTLYISPLKALAVDIARNLER
                     PIAEMALPIRVETRTGDTSAHKRARQIERPPDILLTTPEQLSLLLAHPDARAMFGSLR
                     RVILDELHSLVTSKRGDLLSLGLARLYRMAPELTAVGLSATVREPDDLRRYLVPQPPS
                     DGARSGERLADLVVVEGGARPDIHMLEIEEHLPLAGHTAALSMPAIYDLIRRHRTTLV
                     FVNTRLQAEYTFQALWTLNDDGLPIALHHGSLDVEQRRRVEAAMGAGRLKGVVCTSTL
                     DLGIDWGDVDLVVNVGAPKGASRIMQRIGRSNHRMDEPSKAYLVPSNRFEILECRAAL
                     DAVHEAAQDTPDARIGALDVLSQHVLGMACAEPFSVADLYEEVRSAAPYADLTYEDFE
                     AVVDFVATGGYALRAYERFAKIVRGPDGLWRVRDGRVAQRYRLNVGTIVEATMIKVRL
                     ARTTRANPGTALPKGGRILGDIEESFAETMSVGDTFAFAGEVLRFGGIHENEVLVTRT
                     SGVDPKVPSYAGGKFPLSSFLAERVRNILADPFEWDRLPAQMSDWLLQQRRRSVLPGP
                     RDLLVETFARMNRHYLVCYPFEGRLAHQTLGMLLTRRLERAKLRPNGFVANDYGIAVW
                     GNGDITQRVGEEPGFLDDLFSEDMLGDDLEDWLAEAALMKRSFRQCAIIAGLIERRFP
                     GQEKTKRQVTMSTDLVYDVLRKYQPDHVLLRAARADAATGLLDVRRLGVMLARIRGRI
                     IHKALERVSPMSVSVMLEIGRERVHGEGADEILAEAEAELIEEALA"
     gene            4612..5316
                     /gene="pdeM"
                     /locus_tag="VE686_09890"
     CDS             4612..5316
                     /gene="pdeM"
                     /locus_tag="VE686_09890"
                     /EC_number="3.1.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012455219.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ligase-associated DNA damage response
                     endonuclease PdeM"
                     /protein_id="HYY84792.1"
                     /translation="MSAALAKPKTVTSDVALSGAAATLDITGALYLADADVLVVADLH
                     LEKGSSFAERGQMLPPYDTHATLAALANAVARFAPRTVVALGDSFHDVRGPERLDRAD
                     REAISRLQAGREWIWVTGNHDHTLPGHIGGTVTAEIKVAGLTLRHEPLVDGGAELAGH
                     LHPVGKVAMRGRSVRRRCFVTDSTRCLLPAFGAYAGGLNVCDAVFKPLFPQGFTAHLI
                     GDGRLFAIGRNMLCRD"
     gene            complement(5338..>5452)
                     /locus_tag="VE686_09895"
     CDS             complement(5338..>5452)
                     /locus_tag="VE686_09895"
                     /inference="COORDINATES: protein motif:HMM:NF021148.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="TIGR02186 family protein"
                     /protein_id="HYY84793.1"
                     /translation="EEQVGAIARNWSAAYGIVTAACAVLLGWFASVIFRRD"
BASE COUNT          723 a         2087 c         1815 g          827 t
ORIGIN      
        1 ggcgtggaca gcgatccgag cggcccaatg ctccaagccc gctgtagtat ccccagagcc
       61 tatcacaccg cgaggcgtct tcgggagccg caccgcccct tggcgcggcg gacgcgccgt
      121 ggctaacgtg ccgcgaaccc tctgaagcga ctcgctcccg gacaatggaa ccgtacgtct
      181 ttgcggccgt gcttgccgcc gcggccatgc acgccgggtg gaactcgttc gtgaaggtgt
      241 cgctcgagcc cttgctggcc atgacgctca tctcggcgat gggaggcctg gcggcggtgc
      301 ccctgctgat ctggttcggc tggcccaagg ccgacgcttg gccgtggctg ataggatcgg
      361 tggtcgtgca ccttgcctat tacggcgcgc tcggcgaggc ctaccgccgc gccgacatga
      421 gccagatcta cccgatcgcg cgtggcggag cgccgctgct caccgccgtg gtctcgcgcc
      481 tgttcgtcac cgagccgatc agcgcgctcg ccctgacggg catcgccgtc ctcggctcgg
      541 gcgtcgccct catgtcggtg cttggacgcc ggcgcggagc ggccttcgac ggcgctgccg
      601 tcgccttcgc gctgctcacc gccgtgatca tctgcgccta caccatcatc gacgggatcg
      661 gcgcccggac ggcgggcgat ccgcacgcgt actcggccgc gctgttcgtc ctcgacggct
      721 tgccgctgcc cctcttcatc ctctggcgcc gcggcctttc gggcctcgca ccggcgagga
      781 agtttctcgg ccggggcctg gccggcggcc tcatgtcgct cggctcgtac tggatcgcca
      841 tctgggccat gacggtggcg ccgatcgccc tggtcgcggc cctgcgcgag tcgagcgtct
      901 tgtgggccgc cgtgatcgcg gtcgtgttcc tcaaggagcc ggtggtgccg gcgcgcgcca
      961 tcgcggcagc gatgatcctc tgcggcctcg tgctgatccg ggccgggtag cgccgccgct
     1021 tgcgcctcgc ggcccgtcgc gtaaacgcgg ggccatgtct gtctcccgca ccattcgcag
     1081 ctcgggcgat ctcctcgccg accggcgcta cggctatgcg gacgccgcgc tgacgcaggg
     1141 cgagttcgcg gccgcggcgg acctcgccct gcaggtgctc gagctcgcgc cggattacgg
     1201 gcccgcgcac gcgctcctcg gtcgtgcccg cgccgggctt gccgatcgcg acggagccgt
     1261 cgaggcgctg tcgcgggcac tggcctgcga ccccgacgac gccctcggcg tgcgcctcga
     1321 cctcgcccgc ctcggcgcgc tcgcccccga gagcgccatc acgccgggat acgtgcgcgc
     1381 gctcttcgac gactacgccc cgcggttcga ccgccacctg gtgcgcagcc tcgactaccg
     1441 cgggcccgag ctgatccacg ccgccgtgca ccgcgcggcg acggacctcg tccgccccgc
     1501 ccgcttcgcc cgcatgctcg acctcggctg cggcaccggc ctcgtcggcc gcgcctttgc
     1561 cgaccatgcg ggcctcatcg aaggggtcga cctgtcgccc ggcatgctgg cccaggcgag
     1621 aaggacccgg gcctacgccg ccctgcacga gggcgagctc gtcacggccc tccgcgcatt
     1681 tccggacgac gccttcgacc tcgtcaccgc cgccgacgtg ctggtctaca tgtcggcgct
     1741 cgagccggtg ttcggggagg tccgccgcgt ggtcgcacca cgcggcctct tcgccttcac
     1801 ggtcgaggcg tgcgccgggg ccgacgtgct cctcggcgac ggcgggcgct acgcccattc
     1861 gcgagcctac ctgcgccggc tcgcggcgga tgccggcttc gaggtggcgc gcctcgacga
     1921 ggtctcgacc cgcgaggacc ggggcgaggc ggtgccgggc ttcctggcgg tgctcgccgc
     1981 accgcgccga cgcggcgcac ctgacggggg caggccggca gggtagggtt ccgaggtgcc
     2041 ccgccccgtc gccaagaaac ccgcccagaa gcccgacctt ctgcccgagc gcttccaagc
     2101 ctggttcgcg agccggcgct ggacggcgcg gccgcatcag ctcgccctca tcgagcacgc
     2161 cgcggccggc cgctccgccc ttctcgtcgc gccgacgggc gccggcaaga ccctcgcggg
     2221 cttcctgccc accctgatcg agctcgccgg gccctcaccc ggtcgccgcc tcccggcggc
     2281 gactcgacct ctcccgcaag cgggcgaggt gaagcggggc cttcacaccc tctacatctc
     2341 gcccctcaag gcgctggcgg tcgatatcgc gcgcaacctc gagcggccga tcgccgagat
     2401 ggcgctgccc atccgtgtcg agacgcgcac cggcgacacc tccgcgcaca agcgcgcccg
     2461 gcagatcgag cgcccgcccg acatcctcct gaccaccccc gagcagctct ccctcctcct
     2521 cgctcacccc gacgcgcggg cgatgttcgg ctccctgcgg cgcgtgatcc tcgacgagct
     2581 gcactcgctc gtgacctcca agcgcggcga cctgctctcg ctcgggctcg cgcgcctgta
     2641 ccgcatggcg ccggagctga ccgccgtcgg cctctcggcc accgtgcgcg aacccgacga
     2701 cctgcgccgc taccttgtcc cgcagccacc ctcggacgga gcgcggagcg gagaaaggct
     2761 cgccgatctg gtggtcgtgg aaggcggagc gcggcccgac atccacatgc tggagatcga
     2821 ggagcacctg ccgctcgccg gccacacggc cgcgctgtcg atgccggcca tctacgacct
     2881 catccgacgg caccgcacca ccctcgtgtt cgtcaacacg cgactgcagg ccgagtacac
     2941 cttccaggcg ctgtggactc tcaacgacga cggcctgccc atcgcgctgc accacggctc
     3001 cctcgacgtc gagcagcgcc gccgcgtgga ggcggcgatg ggggcgggca ggctgaaagg
     3061 ggtggtgtgc acctcgacgc tcgacctcgg catcgactgg ggcgacgtcg atctcgtcgt
     3121 caacgtcggc gcgccgaaag gggcgagccg cattatgcag cgcatcggcc gctcgaatca
     3181 ccgcatggac gaaccctcga aggcctatct cgtcccctcg aaccgcttcg agatcctcga
     3241 gtgccgcgcc gccctcgacg ccgtgcacga ggccgcgcag gacacccccg acgcccgcat
     3301 cggcgccctc gatgtcctct cgcagcacgt gctcggcatg gcctgcgcgg agccgttctc
     3361 ggtcgccgac ctctacgagg aggtccgctc ggcggcgccc tacgccgacc tcacgtacga
     3421 agacttcgag gcggtcgtcg acttcgtcgc gaccggcggc tacgcgctgc gcgcctacga
     3481 gcgcttcgcc aagatcgtcc gcggcccgga cgggctctgg cgcgtgcgcg acggccgcgt
     3541 ggcgcagcgg taccgcctga acgtcggcac catcgtcgag gccacgatga tcaaggtccg
     3601 cctcgcgcgc acgacacggg ccaaccccgg cacagcgctg cccaagggcg ggcgcatcct
     3661 cggcgacatc gaggagtcct ttgccgaaac catgagcgtc ggcgacacct ttgcgttcgc
     3721 aggcgaggtc ctgcgcttcg gcggcatcca tgagaacgag gtgctcgtca cccgcacctc
     3781 cggcgtcgac ccgaaggtgc cgtcctacgc gggcggcaag ttcccgctct cgagcttcct
     3841 ggccgagcgg gtgcgcaaca tcctcgccga tccgttcgaa tgggaccggc tgccggcgca
     3901 gatgtccgac tggctcctgc agcagcgccg ccgctcggtg ctgcccggcc ctcgcgacct
     3961 cctggtcgag acgttcgcgc gcatgaaccg gcactacctc gtctgctacc ccttcgaggg
     4021 ccggcttgcc caccagacgc tcggcatgct gctcacccgc cggctcgaac gggcgaagct
     4081 gcggccgaac ggcttcgttg cgaacgacta cggcatcgcc gtgtggggca acggcgacat
     4141 cacgcagcgt gtcggcgagg agcccggctt cctcgacgat ctcttctccg aggacatgct
     4201 cggcgacgac ctcgaggatt ggctggctga agcggcgctg atgaagcgca gcttccgcca
     4261 gtgcgccatc atcgccgggc tcatcgagcg ccgctttccc ggccaggaga agacgaagcg
     4321 ccaggtcacc atgtcgaccg acctcgtcta cgacgtgctc cgcaagtacc agccggacca
     4381 cgtcctcctg cgggccgcac gggcggatgc ggcaacgggg ctcctcgacg tgaggcgtct
     4441 tggcgtgatg ctggctcgca ttcgcgggcg aatcatccat aaggcgttgg agcgcgtgtc
     4501 gcccatgagc gtgtcggtca tgctcgagat cggccgcgag cgcgtccatg gcgagggcgc
     4561 ggacgagatt ctggcggaag ccgaagcaga gttgatcgaa gaggccctgg cgtgagcgcc
     4621 gcactggcaa agccgaagac ggtgacaagc gacgtggcgc tctcgggcgc cgcggcgacg
     4681 ctcgacatca cgggggcgct ctatctcgcg gacgccgacg ttctcgtcgt cgccgacctt
     4741 cacctcgaga aggggtcgtc ctttgccgag cgcggccaga tgctgccgcc ctacgacacc
     4801 cacgcgacgc tcgccgcctt ggccaacgcc gtcgcgcggt ttgcgccccg gaccgtagtg
     4861 gcgctcggcg acagcttcca cgacgtgcgc gggccggagc ggctcgaccg cgccgaccgc
     4921 gaggcgatct cccgcctgca agccgggcgc gagtggatct gggtcaccgg caaccacgat
     4981 cacacgctcc cgggccacat cggcggcacg gtcacggccg agatcaaggt tgcggggctg
     5041 acgctccggc acgagccgct cgtcgacggc ggagctgagc ttgccggcca ccttcacccc
     5101 gtcgggaagg tcgccatgcg cggccgctcc gtgcgccggc gctgcttcgt caccgacagc
     5161 acgcgctgcc tcttgcccgc cttcggcgcc tatgcgggcg gcctcaacgt ctgcgacgcg
     5221 gtgttcaagc cgctgttccc gcaaggcttt acggcccatc tcatcggcga cggccgcctc
     5281 ttcgccatcg gccgcaacat gctctgccgc gactgagcgg ctctttctcc cagcccgtca
     5341 gtcgcggcgg aagatcacgc tcgcgaacca gccgagcagc accgcgcaag ccgccgtcac
     5401 gatgccgtac gcggccgacc agttgcgggc gatcgctccg acctgctcct cg
//
LOCUS       DASQWN010000529         6922 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_839559, whole genome shotgun sequence.
ACCESSION   DASQWN010000529 DASQWN010000000
VERSION     DASQWN010000529.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 6922)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6922)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6922
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_839559"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(55..1239)
                     /locus_tag="VE686_09900"
     CDS             complement(55..1239)
                     /locus_tag="VE686_09900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012320648.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MltA domain-containing protein"
                     /protein_id="HYY84794.1"
                     /translation="MSVARLLALAALAVVPALSAPAEVVGPTIAGARVTPVVFEKLPG
                     WTSDDHAAAFAAFRRSCEALARGDPALRPAEPGSRDLRAICLKAAALPASSNPEEARR
                     FFEQTFAAFEVVPETGRGFLTGYFEPEYDGALEPSTEFRAPLLARPDDLVTIAQGETL
                     PGLAPGLQAARRTEAGNYEPYPDRAAIETGALGDKARPIAWVREPGQAFIIQVQGSAR
                     LRLPDGRTLRVAYAGRNGHPYTSIGRILVEEGRIPKDEMTLARLMGWLAANPDEARDL
                     MRRNRSFVFFRVADELEPSDGPIGGAGHPLVAGRSLAVDRTLWSYGLPVWLEGELPIS
                     LTASEPLRRLMIAQDTGSAIVGPARGDFYFGSGAEAGVRAGLLRHAVRFVVLWPRPQG
                     SP"
     gene            complement(1236..1958)
                     /locus_tag="VE686_09905"
     CDS             complement(1236..1958)
                     /locus_tag="VE686_09905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015927705.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Tim44/TimA family putative adaptor protein"
                     /protein_id="HYY84795.1"
                     /translation="MQDSLDVTTIIFLALAAFVIWRLRSVLGQKTGREQPPVMRREPP
                     PPARQEPGSPEPGNVVRLPGAAAGRANGSGAELAPDRWKGVAEAGSAVASGLDEIAKV
                     EPGFDARGFIEGAKMAYEMIVTAFAQGDRKTLKNLLSRDVYEGFDRAIGEREKRGEKA
                     ETTFVSIDKAEIVGVEVRNQVAHMMVRFVSQLITATRNAEGAVVDGSPEAVVEVTDVW
                     TFARPIGSRDPNWQLVATEAGQ"
     gene            2214..2714
                     /gene="secB"
                     /locus_tag="VE686_09910"
     CDS             2214..2714
                     /gene="secB"
                     /locus_tag="VE686_09910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003601188.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051082 - unfolded protein binding
                     [Evidence IEA];
                     GO_process: GO:0015031 - protein transport [Evidence IEA];
                     GO_process: GO:0051262 - protein tetramerization [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protein-export chaperone SecB"
                     /protein_id="HYY84796.1"
                     /translation="MADTPAPNGAQDESTPSLNALAQYTKDFSFENPNAPRSLTPQEQ
                     GPQISIQVNVNAKQLAETDFEVDLTLEGDAKTADDVLFKFELTYAGVFRIRNVPQDQL
                     HPVVMIECPRLLFPFARQMVAEAVRNGGFPPLYIDPIDFVGLYRQKAAEAQGQGGAPA
                     NANLSS"
     gene            complement(2778..3491)
                     /gene="dnaQ"
                     /locus_tag="VE686_09915"
     CDS             complement(2778..3491)
                     /gene="dnaQ"
                     /locus_tag="VE686_09915"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007598597.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit epsilon"
                     /protein_id="HYY84797.1"
                     /translation="MREVVLDTETTGTDVGAGDRIVEIGAVELINHIPTGRSFHAYVN
                     PQRSMPQGAFAVHGLSDAFLADKPRFAAVAGEFEEFIEDSRLVIHNAAFDIAFLNAEL
                     GRIGRPALGMGRVLDTLSMARRKHPGAPASLDALCARYGIDNSRRTKHGALLDAEILA
                     EVYIELIGGKQADLGLAIVRPETMPGAQAIEFRRRETRIIVTRLSEAERNAHAAFVAT
                     LGPNAVWNSYLGSTEAAAS"
     gene            complement(3503..4117)
                     /gene="coaE"
                     /locus_tag="VE686_09920"
     CDS             complement(3503..4117)
                     /gene="coaE"
                     /locus_tag="VE686_09920"
                     /EC_number="2.7.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019402635.1"
                     /note="Dephospho-CoA kinase (CoaE) performs the final step
                     in coenzyme A biosynthesis; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004140 - dephospho-CoA kinase activity
                     [Evidence IEA];
                     GO_process: GO:0015937 - coenzyme A biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dephospho-CoA kinase"
                     /protein_id="HYY84798.1"
                     /translation="MTFVLGLTGSIGMGKSATAAIFRRLGVPVHDADAAVHALYRGPA
                     APLIEAAFPGTVADGVVDRAALGRVVLGSPERMKQLEDIVHPLVRAQEEAFLARAVAS
                     GASVAVLDIPLLLETCAQGRCDAILVVTAPGPVQEERVLARADMTREKFEAIRLKQMP
                     DAEKRRRAHFLVETGRGHAAAEAQVRDILKALAGRPGRVLAERG"
     gene            complement(4114..4971)
                     /locus_tag="VE686_09925"
     CDS             complement(4114..4971)
                     /locus_tag="VE686_09925"
                     /EC_number="1.1.1.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015927972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004764 - shikimate 3-dehydrogenase
                     (NADP+) activity [Evidence IEA];
                     GO_process: GO:0019632 - shikimate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="shikimate dehydrogenase"
                     /protein_id="HYY84799.1"
                     /translation="MSAPVLPGANAFVVGHPIKHSRSPLIHGHWLRRYGIEGSYERVD
                     VPPQAIAAFLNSLAERGFRGGNVTIPHKEAAYRLAGELTDRARRLEAVNTVWLDDGRL
                     HGDNTDILGYVAHLDQTLGTGWEAGIDSALVLGAGGAARAVVAGLLDRGVGRIVVANR
                     TLARAEEIVALAPPRVAAAGWADLGKHMAAANLLVNTTSLGMAGQPPLDLNLEPMRAG
                     AVVSDIVYVPLETPLLADARRRHLRTVDGLGMLLHQAVPGFERWFGVRPEVTAELRAL
                     VVANIEGGR"
     gene            complement(4973..5596)
                     /locus_tag="VE686_09930"
     CDS             complement(4973..5596)
                     /locus_tag="VE686_09930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012330984.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0047429 - nucleoside triphosphate
                     diphosphatase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Maf family protein"
                     /protein_id="HYY84800.1"
                     /translation="MTAAAGPWRAPQPLLLASTSPVRRMLLESAGLPVETEAAGIDER
                     AIEVSLGTADSGALARVLAVEKALAVSRRRPGRIVVGADQILALDGELLHRPATVDDA
                     KAQLARLAGRTHRLHSGMAVARDGEAVASLVEGAQLTMRPLTSRAIDAYAAIAGTERL
                     TQSVGAYQLEGLGIHLFDGVEGDHATILGLPLLPLLRVLRDLDLLAL"
     gene            complement(5593..6423)
                     /locus_tag="VE686_09935"
     CDS             complement(5593..6423)
                     /locus_tag="VE686_09935"
                     /EC_number="2.7.11.33"
                     /EC_number="2.7.4.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019402632.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004674 - protein serine/threonine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016776 - phosphotransferase activity,
                     phosphate group as acceptor [Evidence IEA];
                     GO_process: GO:0006468 - protein phosphorylation [Evidence
                     IEA];
                     GO_process: GO:0006470 - protein dephosphorylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate, water dikinase regulatory protein"
                     /protein_id="HYY84801.1"
                     /translation="MGRSYFHLHLVSDSTGETLITVGRAVAAQYEGVSAIEHVYPLVR
                     SATQLERVIAEIENAPGIVLYTLVETDLVERLEEACRNSGSPHLSVLAPVHALLQAYL
                     GAASTARPGAQHVLNAEYFKRIDAMNFTLMHDDGQLPDDLNEADVVLIGVSRTSKTPT
                     SIYLANRGLKTANIPLVPGVPPPTAVETVRKPLVVGLVASPERIVQIRQNRLLSLRAD
                     EDTAYVDRDSVAEEIAFSRRLCARHHWPMIDVTRRSIEETAAAILDLYRDHRLKFIAV
                     "
     gene            6825..>6922
                     /locus_tag="VE686_09940"
     CDS             6825..>6922
                     /locus_tag="VE686_09940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012591527.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004853 - uroporphyrinogen decarboxylase
                     activity [Evidence IEA];
                     GO_process: GO:0006779 - porphyrin-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen decarboxylase family protein"
                     /protein_id="HYY84802.1"
                     /translation="MRVLAGEPVWPLPIWIMRQAGRYLPEYRELRA"
BASE COUNT         1076 a         2380 c         2471 g          995 t
ORIGIN      
        1 gggcccacag gcggcgctcg tccgccgtga ggccccgcgg gcgccgggcc cgcgtcacgg
       61 cgagccttgc ggcctcggcc acaggacgac gaagcggacc gcgtggcgca agagcccggc
      121 ccgcaccccc gcttccgcgc cgctgccgaa gtagaagtcg ccacgcgccg ggccgacgat
      181 ggcggagccc gtgtcctgcg cgatcatcag ccggcgcagg ggctcggagg cggtgaggct
      241 gatcggcagc tcgccctcga gccacaccgg caggccgtag ctccacagcg tccggtccac
      301 ggcgaggctg cgccccgcca cgagcgggtg cccagccccg ccgatcggtc cgtccgacgg
      361 ttcgagctcg tcggcgacgc ggaagaacac gaacgagcgg ttgcggcgca tgaggtcgcg
      421 cgcctcgtcg gggttggcgg ccagccagcc catgaggcgc gcgagcgtca tctcgtcctt
      481 cgggatgcgc ccctcctcga cgagaatgcg gccgatcgac gtgtagggat ggccgttgcg
      541 ccccgcgtag gcgacccgca gggtacgtcc gtccggcagg cgcaggcgcg cggatccctg
      601 gacctggatg atgaaggcct gccccggctc gcgcacccag gcgatcgggc gggccttatc
      661 gccgagcgcc cccgtctcga tggcggcgcg atccggatag ggttcgtagt tgcccgcctc
      721 cgtgcggcgg gcggcctgca ggcccggcgc gaggcccgga agggtctcgc cctgcgcgat
      781 ggtgacgaga tcgtccggtc gggcgagaag cggtgcccgg aactcggtcg atggctccag
      841 ggcaccgtcg tactccggct cgaagtaccc ggtcaggaag ccgcgcccgg tctcggggac
      901 gacctcgaaa gcggcaaagg tctgctcgaa aaagcggcgc gcctcctcgg gattggagct
      961 cgcgggaagg gcggcggcct tcaggcagat cgctcgcagg tctcgcgagc cgggctcggc
     1021 cggccggagt gccggatcgc cgcgggccag ggcctcacac gaccgccgga acgccgcgaa
     1081 ggcggcggca tgatcgtcgg acgtccagcc cggcagcttc tcgaaaacga ccggcgtgac
     1141 ccgggcaccg gcgatcgtcg ggcccacaac ttcggccggc gcgctcaggg ccggcacgac
     1201 ggcgagcgcc gcgagagcca gcaggcgcgc aacgctcact gcccggcttc ggtcgccacg
     1261 agctgccaat tggggtcccg gctgccgatc gggcgcgcga aggtccacac gtccgtgacc
     1321 tccaccaccg cctcggggct gccgtcgacc acggcgcctt cggcattgcg ggtcgcagtg
     1381 atgagctgcg acacgaagcg gaccatcatg tgcgcgacct gattgcgcac ttcgaccccg
     1441 acgatctcgg ccttgtcgat ggacacgaag gtggtctcgg ccttctcgcc gcgcttctcg
     1501 cgctcgccga tggcgcggtc gaagccctcg tagacgtcgc gggagagcag gttcttgagc
     1561 gtcttgcggt ccccctgcgc gaaggccgtg acaatcatct cgtaggccat cttggcgccc
     1621 tcgatgaagc cccgggcatc gaagcccggc tccaccttgg cgatctcgtc gagaccgctg
     1681 gcgacggccg atcccgcctc ggccacgccc ttccagcgat cgggagcaag ctcggcgccg
     1741 ctgccgttgg ctcggccggc cgctgcgccg ggcagtcgca ccacgtttcc gggctcgggt
     1801 gagcctggct cctggcgtgc cggaggcggc ggctcgcgcc gcatcacggg cggctgctcg
     1861 cggccggtct tctggccgag gaccgagcgc aggcgccaga tcacgaaggc cgcgagcgcc
     1921 aggaagatga tcgtcgtcac gtcgagggaa tcttgcatcg tccatccgga tggcagcggg
     1981 actcccgccg cacggccctc gagtgaggaa atcgggacga gagttcaagg ccgtcgcgac
     2041 tatatggggc gcgaggctcg tagcatccac ccacccctcc ggcaaggcaa ccgactcatg
     2101 cttgttcggc tctgtgaagc gtgatagcgc ggtcgcctcg taacccgcgc cgcgggcgct
     2161 cgcgcagcgc cgcccgggcc tcgccctcta ctagatctcg ggagccttcc ctcatggccg
     2221 acaccccggc acccaacggc gcgcaggatg aatccacgcc gtccctgaac gcgctggcgc
     2281 agtacaccaa ggacttctcg ttcgagaacc cgaacgcacc gcgctccctg acgccgcagg
     2341 agcaggggcc gcagatcagc atccaggtga acgtgaatgc gaagcagctc gccgagaccg
     2401 atttcgaggt cgacctaacc ctcgagggcg acgccaagac cgccgacgac gtcctgttca
     2461 agttcgagct gacctatgcg ggcgtgttcc ggatccgcaa cgtgccccag gaccaactcc
     2521 acccggtcgt catgatcgag tgcccgcgcc tgctgtttcc cttcgcgcgt cagatggtgg
     2581 ccgaggccgt gcgcaacggc ggcttcccgc cgctctacat cgatccgatc gatttcgtcg
     2641 ggctctaccg ccagaaggcc gccgaggctc agggacaagg cggcgctccc gcaaacgcca
     2701 acctgtcgtc ctaacaccgc ccattcggga ccgacggtcg cgataggtgc ccgccttcgc
     2761 gggcacggca gcgcgagcta ggacgctgcg gcctcggtcg agccgagata gctgttccaa
     2821 acagcattcg ggccgagcgt cgccacgaag gcggcgtgcg cgttgcgctc ggcctcgctc
     2881 aggcgcgtca cgatgatgcg ggtctcgcgg cggcgaaact cgatcgcctg cgcgcccggc
     2941 atcgtctcgg gccggacgat cgcgaggccg aggtcggcct gcttgccgcc gatgagctcg
     3001 atgtagacct cggccaggat ctcggcgtcg aggagtgcgc cgtgcttcgt ccggcgcgag
     3061 ttgtcgatgc cgtagcgcgc gcagagcgcg tcgaggctcg ccggcgcgcc ggggtgcttg
     3121 cgccgcgcca tgctgagcgt gtcgagcacc cgccccatgc cgagcgcagg tcggccgatg
     3181 cgccccaact cggcgttgag gaacgcgatg tcgaaggccg cattgtggat cacgaggcgg
     3241 gagtcctcga tgaactcctc gaactcgccc gcaacggcgg cgaagcgcgg cttgtcggcg
     3301 aggaacgcat ccgacaggcc gtgaaccgcg aaggcaccct gcggcatcga ccgttgcggg
     3361 ttcacgtagg cgtgaaacga gcgcccggtc gggatgtggt tgatgagctc gacggcgccg
     3421 atctcgacga tgcggtcgcc cgcgccgacg tcggtcccgg ttgtctcggt gtcgagcacg
     3481 acctcgcgca tggtctcgtc agctaccctc gttcggccag cacccggcca ggccggcccg
     3541 ccaacgcctt gagaatatcc cgtacctggg cctcggcggc agcgtgcccg cgccccgtct
     3601 ccacaagaaa gtgcgcgcgc cgccgcttct ctgcgtccgg catctgcttc aggcggatcg
     3661 cctcgaactt ctcgcgcgtc atgtcagcgc gggctagcac gcgctcctcc tggacgggcc
     3721 cgggcgcggt gaccacgagt atggcgtcgc agcggccttg cgcacatgtc tcgaggagaa
     3781 gcgggatgtc gagcaccgcc acggatgccc cgctggccac cgcacgggcg agaaaagctt
     3841 cttcctgcgc ccgtacgagc ggatgcacga tgtcctcgag ctgcttcatg cgctccggcg
     3901 agccgaggac cacgcggccg agagccgcgc ggtcgacgac cccgtcggcg accgtccccg
     3961 ggaaggccgc ctcgatcagg ggtgcggccg ggccgcggta aagcgcatgc acggctgcgt
     4021 cggcgtcatg gaccggaacg ccgaggcgcc ggaagatggc cgccgtcgcg gacttgccca
     4081 tgccgatcga gcccgtaagg ccgaggacga aggtcatcgc ccgccctcga tgttggccac
     4141 cacgagggcg cgtagctcgg ccgtaacctc ggggcgcacg ccgaaccagc gctcgaatcc
     4201 cggcacggcc tggtgcagca gcatgccgag accgtcgacc gtgcgcagat gccgccggcg
     4261 ggcgtccgcc aggagcggcg tctcgagggg cacgtagacg atgtcggaca cgaccgcacc
     4321 ggcacgcatg ggctccaggt tgagatcgag gggcggctgg cccgccatgc cgagcgacgt
     4381 ggtgttcacc aggagatttg cggcggccat gtgcttgccg aggtcggccc agcccgccgc
     4441 ggcgacccgg ggcggagcaa gggcgacgat ctcctcggcc cgggcgagcg tacggttcgc
     4501 caccacgatg cgcccgacac cacggtcgag aagccctgcc acgacggccc tcgccgcgcc
     4561 tccggcgccg agcacgaggg cgctgtcaat tcccgcctcc cacccggttc caagcgtctg
     4621 gtcgaggtgg gccacgtagc caaggatgtc ggtgttgtcg ccgtgcaggc gcccgtcgtc
     4681 gagccagacg gtgttgacgg cttcgaggcg ccgcgcccga tcggtcagct cgccggcgag
     4741 ccgataggcc gcctccttgt ggggaatggt gacgtttccg ccgcgaaagc cgcgttcagc
     4801 gaggctgttc agaaaggccg cgatcgcctg aggcgggaca tccacgcgct cgtaggagcc
     4861 ttcgatccca tagcggcgca gccagtggcc gtggatcagc ggcgaccgcg agtgcttgat
     4921 cggatgaccg accacgaagg cgtttgcgcc aggcaaaacc ggggcggaca tgtcagagcg
     4981 ccaggaggtc gaggtcgcgc aacacccgca gaagcgggag gagcggcagg ccgaggattg
     5041 tcgcgtggtc gccctcgacg ccgtcgaaga ggtgaatgcc cagcccttcg agctggtatg
     5101 cgccgacgct ctgagtcagg cgctccgtcc cggcgatcgc cgcataggcg tcgatcgcgc
     5161 gggacgtcag cggacgcatc gtgagctgcg cgccctcgac gaggctcgcg accgcctccc
     5221 cgtcccgcgc cacggccatg ccagagtgga ggcggtgggt tctgccggca aggcgagcga
     5281 gctgtgcctt cgcgtcgtca acggtcgcgg gccgatgcag cagctcgccg tcgagcgcca
     5341 ggatttggtc ggcgccgacc acgatccggc cagggcgacg ccggctcacc gcaagcgcct
     5401 tctcgaccgc gaggacgcgc gcgagcgcgc cagaatcagc ggttcccagg gagacctcga
     5461 tggcgcgctc gtcgatgccg gccgcttccg tctcgaccgg cagccccgcg ctctccagca
     5521 gcatgcgccg aaccgggctc gtcgaggcga ggagcagcgg ctgcggcgcg cgccacgggc
     5581 ctgcggcggc ggtcatacgg cgatgaactt caggcggtgg tcgcggtaga ggtcgaggat
     5641 cgcggccgcg gtctcctcga tcgagcggcg ggtgacgtcg atcatgggcc agtgatggcg
     5701 tgcgcagagg cgacgcgaga aggcgatctc ctcggcgaca gagtcgcggt cgacgtaggc
     5761 cgtatcctcg tcggcgcgca ggctgagaag ccggttctgg cggatctgga cgatgcgctc
     5821 cggcgaggcg acgaggccga cgacgagcgg cttgcggacg gtctcgaccg cggtaggcgg
     5881 cggcaccccg ggcacaaggg ggatgttggc ggtcttcagg ccgcggttgg caaggtagat
     5941 ggaggtcggg gtcttcgagg tccggctcac gccgatgagc accacgtcgg cctcgttgag
     6001 gtcgtcgggg agctgcccgt cgtcgtgcat cagcgtgaag ttcatggcgt cgatgcgctt
     6061 aaagtactcc gcgttgagca cgtgctgcgc gccggggcgg gccgtcgagg cggcgccgag
     6121 ataggcctgc agcagcgcgt gcacgggcgc gagcacggac aggtgcggcg atccggaatt
     6181 gcggcaggcc tcctcgaggc gctcgacgag atccgtctcg acgagtgtgt agagcacgat
     6241 gccgggcgcg ttctcgatct cggcgatgac gcgctcgagc tgcgtcgccg agcgcaccag
     6301 ggggtagacg tgctcgatcg ccgagacgcc ttcgtattgc gccgcgacgg cgcgcccgac
     6361 ggtgatcaag gtctccccgg tcgaatccga cacgaggtgc agatggaagt agctccgtcc
     6421 caaggctggg gtcctggcga gacaacctgt cgaccgatgt ggataaaggc gttgggcgga
     6481 cgggtccagg cgccaggggc cgggaagccc aggatatcgg tccacatgcc tcgaccgcgg
     6541 gaacggcctc ggcgcaatgc gggagaatcg cggacgaatc ggtcgcgggc ggcatgcaga
     6601 tgccgacgac cgcggtcgtt aacgccttgt taacctttgt gcttcgttaa gcccccccgc
     6661 cggccgttgg acgagcccgc gacggccccg ccagtgtgga cacggtgtgg acggggctgc
     6721 ggctccatga ttcagcctcc aagagaaaca acagaagaaa gattcaaaga ttccttttga
     6781 aggaagggac ggtggtgacg agcgcggcga cgacgaagcc tgtcctgcgc gttctcgccg
     6841 gcgaaccggt gtggccactc ccgatctgga tcatgcgcca agccgggcgc tatctccccg
     6901 agtacaggga gctccgcgcc aa
//
LOCUS       DASQWN010000530         3121 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1485299, whole genome shotgun sequence.
ACCESSION   DASQWN010000530 DASQWN010000000
VERSION     DASQWN010000530.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 3121)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3121)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3121
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1485299"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1283
                     /locus_tag="VE686_09945"
     CDS             <1..1283
                     /locus_tag="VE686_09945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019404734.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="amino acid permease"
                     /protein_id="HYY84803.1"
                     /translation="SLSVLDGVAMMVGIIIGVGIFKTPALVAAQASSEAAVIGLWLIG
                     GAVTLAGALVYAELGAAYPSTGGEYHYLDRALARSVAILFAWARVTVIQTGAIAAVAF
                     VFGDYAGQLLPLGPYSQAIYAALAILVFTAINLAGASPGTRAQHLFTGGTVLTVAVVV
                     AISLASEGSATTGTPPPAATGGGWGLAMIFILLTYGGWNEAAYLSAELKDARRAMVRV
                     LVFSIAAVAAIYLLFNIAVLHVLGLEGLRASAALGTDLMRRTTGDAGAWLVGIVVCCA
                     ALSTLNGTIFTGVRVYHAVGRDVPALRRFGIWDPHGQKPTMALLTQGAIAIALVAFGA
                     VSRDGFQAIVEYTAPVFWFFLFLVGVSLFRLRRLEPERERPFRVPLYPLTPAFFCATC
                     AYLLYSSVAYTGLGALLGVIVLVAGIPLLFLRRA"
     gene            complement(1288..2115)
                     /locus_tag="VE686_09950"
     CDS             complement(1288..2115)
                     /locus_tag="VE686_09950"
                     /EC_number="2.1.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019404735.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HYY84804.1"
                     /translation="MGLAKSLSRWVGLSSLAALVALGPAAAQPAVDFQPKVGQPGKDV
                     VWVPTADALVDKMLDMAQVTSADYVIDLGSGDGRTVIAAAKRGARAAGIEYDPAMVEL
                     SIRNARDAGVEDRAKFEKADLFETDFSQATVLTMFLLPDINLRLRPKILDMKPGTRVV
                     SNTFTMGEWAPDQTFRSPAECTQFCMAYFWIVPAKVEGTWKLGDGKLRLEQQFQKISG
                     TMTSGGTAAPITDATLSGDAIAFTAGKTTYTGRVNGNVIEGTSNSGETRTAWRATRA"
     gene            complement(2206..2784)
                     /locus_tag="VE686_09955"
     CDS             complement(2206..2784)
                     /locus_tag="VE686_09955"
                     /EC_number="2.5.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006265284.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008817 - corrinoid adenosyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0009236 - cobalamin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cob(I)yrinic acid a,c-diamide
                     adenosyltransferase"
                     /protein_id="HYY84805.1"
                     /translation="MVKLNRIYTRTGDDGTTGLATGPRRRKDDLRVEAYGTVDETNAC
                     VGLARVHLAADADFDAMLSRIQNDLFDLGADLATPDTGETLSYEPLRVVGAQVERVER
                     EIDRLNADLAPLRSFVLPAGSAAAAALHLARTVCRRAERIVVALSRVEGEVVSPAAVQ
                     YLNRLSDLLFVAARTANDKGARDVLWVPGQNR"
     gene            complement(2806..>3121)
                     /locus_tag="VE686_09960"
     CDS             complement(2806..>3121)
                     /locus_tag="VE686_09960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003601220.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="acyloxyacyl hydrolase"
                     /protein_id="HYY84806.1"
                     /translation="NLGGGTSFAYTGLTWTVDLGPRLFIEGSLGAAVHNGYTGRNPFA
                     TPLDRSPLGCSPLFREAGAVGVRLSANWSLLATVERLSNGGLCTENKGLTNLGARLGY
                     SF"
BASE COUNT          438 a         1073 c         1043 g          567 t
ORIGIN      
        1 caagcctctc cgtcctcgac ggcgtcgcca tgatggtcgg catcatcatc ggcgtgggca
       61 tcttcaaaac gccggcgttg gtggccgccc aggcctcgag cgaggcggcc gtcatcgggc
      121 tgtggctcat cggcggcgcc gtgacgctcg cgggcgcgct cgtctatgcg gagctcgggg
      181 cggcgtaccc gagcaccggc ggcgagtacc attatctcga ccgggcgctc gcccgctccg
      241 tcgccattct gttcgcctgg gcccgcgtga cggtgatcca gaccggcgcc atcgcggctg
      301 ttgcatttgt cttcggcgac tacgcgggcc agctcctccc cctcggcccc tacagccagg
      361 ccatctatgc tgcgctcgcg atcctcgtct tcacggcgat caatctcgcg ggcgcgtctc
      421 cggggacccg cgcccagcac ctgttcacgg gcggaaccgt cctcacggtc gctgtggtgg
      481 tcgcgatcag ccttgcctcc gagggctccg ccaccaccgg cacgcctcct cccgccgcga
      541 ccgggggcgg atgggggctg gcgatgatct tcattctttt gacgtacggc ggctggaacg
      601 aggccgccta cctctcggcc gagctcaagg acgcacgccg ggcgatggtg cgcgtgcttg
      661 tcttcagcat cgcggcggtc gcggcgatct atctcctttt caacatcgca gtcctgcacg
      721 tcctgggtct cgaaggcctg cgcgcgagcg ccgcgctggg taccgatctt atgcgcagga
      781 cgaccggcga tgcgggcgca tggctcgtcg gcatcgtggt ctgctgcgcg gctctgagca
      841 cgctgaacgg caccatcttc accggcgtgc gcgtctatca cgcggtcggg cgcgacgtgc
      901 ccgccctgcg ccgattcggg atctgggatc cgcacggcca aaagccgacc atggctttac
      961 tcacgcaagg cgcgatcgcc atcgcgctgg ttgctttcgg cgccgtgagc cgcgacggct
     1021 tccaggccat cgtcgagtac accgctccgg tgttttggtt ttttctcttc ctcgtcgggg
     1081 tgtcgctgtt tcggctgcgc cggctggaac cggagcgcga gcgccccttc cgggtgccgc
     1141 tgtacccgct cacgccggcg ttcttctgcg ctacctgcgc gtatctgctc tactcgagcg
     1201 tcgcttacac gggcctgggt gcgctgctcg gcgtgatcgt cctcgtggca ggcatacccc
     1261 tgctcttcct gcgccgcgca tgaggcttta agcccgggtc gcacgccagg cggtgcgcgt
     1321 ctcccccgag ttgctcgttc cttcgatgac attaccgttc acccgcccag tgtaggtcgt
     1381 cttcccggcc gtgaacgcga tggcgtcgcc gctcagggtc gcgtccgtga tcggcgcggc
     1441 cgtgccgccg gatgtcatgg tcccggaaat tttctggaat tgctgctcga gcctgagttt
     1501 accgtccccc agcttccaag tgccctccac ctttgcggga acgatccaga agtaggccat
     1561 gcagaactgc gtgcactcgg ccggggaccg gaaggtctgg tcgggtgccc actcgcccat
     1621 cgtgaaggtg ttcgacacca cgcgcgttcc gggcttcatg tcgaggatct tcgggcgcag
     1681 ccgaagattg atgtcgggca gcaggaacat ggtgagcacc gtcgcctgcg agaagtcggt
     1741 ctcgaacaga tccgccttct cgaacttcgc cctgtcctcg acgccggcat cacgggcatt
     1801 tcggatcgac agctcgacca tggccgggtc gtactcgatg ccggccgccc tggcgccgcg
     1861 ctttgcggcg gcgatcacgg tccgcccgtc acccgagccg agatcgatga cgtaatcggc
     1921 gctcgtgacc tgagccatgt cgagcatctt gtcgacgagc gcgtccgccg tcggcaccca
     1981 gacaacgtcc ttacccggct gtccgacctt gggctggaag tccacagcgg gctgagctgc
     2041 ggcaggtccg agggcgacga gcgccgctag cgaggacagc cccacccaac gggacaatga
     2101 cttggcgagt cccatgcgca tctccgatcg aattctgtgg cggtcgttgg cggctggcaa
     2161 acaagcaacg gcggacgatc ttcgttccag cgtccgccat ggttatcacc ggttctggcc
     2221 cggaacccag aggacgtcgc gggcgccctt gtcgttggcg gtgcgcgccg ccacgaacag
     2281 caggtcggac agtcgattga ggtactgcac ggccgcaggg gacacgactt cgccttcgac
     2341 gcggctcagt gcaaccacga tgcgctccgc ccggcggcac acagttcggg cgaggtgcag
     2401 cgccgcggcg gcggcgctcc ctgcggggag cacaaacgag cgcagcgggg caaggtcggc
     2461 gttgaggcgg tcgatctcgc gctccacgcg ctctacctgc gcaccaacga ctcgcagcgg
     2521 ttcgtacgac agggtctcgc ccgtgtcggg cgttgcgagg tcggcaccga ggtcgaacag
     2581 atcgttctgg atgcgcgaga gcattgcgtc gaaatccgcg tcggcggcga ggtgaacgcg
     2641 ggcgagaccg acgcaggcgt tggtctcgtc gaccgtgccg tacgcctcga cccgcagatc
     2701 gtccttacgg cgccgcggac cggtggcgag acccgtcgtg ccgtcgtccc ccgtgcgggt
     2761 gtagatgcgg ttgagcttga ccattggacg ggccccgcgt gagggtcaga agctataccc
     2821 gagccgcgcg cccaggttcg tcaagccctt gttctcggtg cacaggccgc cgttcgagag
     2881 ccgctcgacg gtcgcgagca ggctccagtt ggcgctgagc cgcacgccca ccgccccggc
     2941 ctcgcggaac agcggcgagc agccgagcgg actgcggtcg agcggggtcg cgaaggggtt
     3001 gcggcccgtg tagccgttgt gcacggccgc cccgaggctg ccctcgatga acaggcgcgg
     3061 gcccaggtcc accgtccagg tgagtccggt ataggcaaag cttgtcccgc cgccgaggtt
     3121 g
//
LOCUS       DASQWN010000531         2034 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_96894, whole genome shotgun sequence.
ACCESSION   DASQWN010000531 DASQWN010000000
VERSION     DASQWN010000531.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2034)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2034)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2034
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_96894"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1753
                     /locus_tag="VE686_09965"
     CDS             <1..1753
                     /locus_tag="VE686_09965"
                     /EC_number="3.5.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF013927.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016811 - hydrolase activity, acting on
                     carbon-nitrogen (but not peptide) bonds, in linear amides
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="penicillin acylase family protein"
                     /protein_id="HYY84807.1"
                     /translation="EALDAFKLATAAVTFSPERLAATLDQAFAWTKVDDLGDVIRDSA
                     FEGSNNWVVHGSRTATGRPILGSDPHRTHAVPSLRYLVHLSSPEFDAIGTGEAAVPGV
                     SLGHNGHSAFALTIFNTDQEDVYVYETAPGEADAYRYGDGFERMRVVEERFAVKGAPD
                     QTLALKFTRHGPVVFEDPSKRLALGVRSVWSQPGAAPYLVSLSSMRSKSLDEFREVMR
                     RWGTPSVNQVYADVTGTIAWMPAGYAPVRPNWDGLLPVPGDGRYEWAGMRDQRELPSA
                     VDPARGYCATANEMNLPPDWPHDEKKLGFEFTESSRAVRIHEALDAQDRHSIADACAL
                     QTDVLSVPARRLCAILRSMTSDHAEALPALALLRDWDFRLEVDSAAAALFEVWWTKHL
                     KGALFAALAPDPAVRSILLPGDPAGILQALERPDDRFGTDPRRGRDALLLRTLAAAFG
                     DCAERMGADAAAWGWGKLHHGFFEHALSGAGAAPQDADVGPLPTGGSASTPMHTGYRA
                     SDFRVIAGASVRMAIDVGAWDNSVCINAPGQSGDPRSPHYRDLAPLWAQGRYVPMLYS
                     WPRIDEATQTVLHLVPA"
     gene            1828..>2034
                     /locus_tag="VE686_09970"
     CDS             1828..>2034
                     /locus_tag="VE686_09970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018388293.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF892 family protein"
                     /protein_id="HYY84808.1"
                     /translation="MAEKDLQALFLHQLKDIYFAETTIVKALPKLAQAAQSEELRGAF
                     AVHLKETEGQVRRLEQVFKLLGEKP"
BASE COUNT          299 a          754 c          680 g          301 t
ORIGIN      
        1 cgaggcgctc gatgccttca agctcgccac cgccgccgtg accttctcgc ccgagcggct
       61 ggcggccacc ctcgaccagg ccttcgcctg gaccaaggtc gacgatctcg gcgacgtgat
      121 ccgggacagc gccttcgagg gctccaacaa ctgggtcgtc catggcagcc gcacggccac
      181 cggccggccc atcctcggaa gcgatccgca ccgcacgcac gcggtgccgt ccctgcgcta
      241 cctcgtccac ctgtcgtcgc cggagttcga tgcgatcggt accggcgagg ccgccgtgcc
      301 cggcgtctcc ctcggccaca acggccacag cgccttcgcg ctgaccatct tcaacaccga
      361 ccaggaggac gtatacgtct acgagaccgc gccgggcgag gccgacgcgt accgctacgg
      421 cgacggcttc gagcgcatgc gcgtcgtcga ggagcgcttc gccgtgaagg gcgcgccgga
      481 ccagacgctg gcgctgaagt tcacccgcca cggacccgtg gtgttcgaag atccgtcgaa
      541 gcgcctcgcg ctcggggtcc gctcggtgtg gtcgcagccc ggcgcggcgc cctacctcgt
      601 cagcctctcg tccatgcggt cgaagagcct cgacgaattc cgcgaggtga tgcggcgctg
      661 gggcacgccc tcggtgaacc aggtctatgc cgacgtgacc ggcaccattg cgtggatgcc
      721 ggccggctat gcgcccgtgc gcccgaactg ggacgggctg ctgcccgtgc cgggcgacgg
      781 ccgctacgaa tgggccggca tgcgcgacca gcgcgagttg ccctccgccg tcgatccggc
      841 ccgcggctac tgcgccacgg cgaacgagat gaacctgccg cccgactggc cgcacgacga
      901 gaagaagctc ggcttcgaat tcaccgagag ctcgcgcgcg gtccgcatcc acgaagccct
      961 cgacgcacag gaccggcaca gcatcgccga cgcctgcgcg ctgcagaccg acgtcctctc
     1021 ggtcccggcg cggcggctct gcgccatcct ccggtccatg acgtccgacc atgccgaggc
     1081 gctcccggcc ctggcgctcc tgcgcgactg ggacttccgc ctggaggtgg acagtgcggc
     1141 ggcggcactg ttcgaggtct ggtggacgaa gcacctcaag ggcgcgctgt tcgccgccct
     1201 tgcacccgat cctgcggtcc gctccatcct ccttcccggc gaccccgcgg gcatcctgca
     1261 ggcgctggag cgtcccgatg accgcttcgg cactgatccg cgccgcggcc gcgacgccct
     1321 cctcctgcgc acactcgcgg ccgcgttcgg tgattgcgcc gagcgcatgg gcgcggatgc
     1381 cgccgcgtgg ggctggggca aactgcacca cggcttcttc gagcatgcgc tgtcgggcgc
     1441 cggcgccgcg ccgcaggacg cggatgtcgg gccgcttccg acgggcggca gcgcctccac
     1501 gcccatgcac accggctacc gggcgagtga cttccgggtc atcgccggag cttccgtgcg
     1561 catggcgatc gacgtcgggg cctgggacaa cagcgtctgc atcaacgctc cgggccagtc
     1621 gggcgacccg cgctcgccgc attaccgcga cctcgcgccc ttgtgggcgc aggggcgcta
     1681 cgtacccatg ctctactcct ggccgcggat cgacgaggcg acgcagaccg tgctccacct
     1741 cgtgcccgcc tgaggcatgg tgcagcactc ggaacaccgt ccctcgggcc gggttgtcgg
     1801 agcgtccccg gaattcagga gagcccgatg gccgagaaag atctgcaggc gctgtttctg
     1861 caccagctga aagacatcta tttcgccgaa acaacgatcg tgaaggcgct gccgaagctt
     1921 gcgcaggcgg cgcaatcgga agagctccgc ggcgcctttg cggtgcatct caaggagacg
     1981 gaggggcagg tgcgccgcct cgagcaggtc ttcaagctcc tcggcgagaa gccg
//
LOCUS       DASQWN010000532         3192 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_145144, whole genome shotgun sequence.
ACCESSION   DASQWN010000532 DASQWN010000000
VERSION     DASQWN010000532.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 3192)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3192)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3192
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_145144"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..442)
                     /locus_tag="VE686_09975"
     CDS             complement(<1..442)
                     /locus_tag="VE686_09975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007876297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0015803 - branched-chain amino acid
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid ABC transporter
                     permease"
                     /protein_id="HYY84809.1"
                     /translation="MALQAELRSPFASWRGLSENTGLLAALGIAVLAVAPFVLYPVFM
                     MKVLCFGLFAAAFNLLIGYVGLLSFGHACFFGGAAYITAYTVKHWGLEPLTGILLGVA
                     FAAALGVVVGYLAIRRSGIYFSMITLALAQMFFFFCLQAPFTGGE"
     gene            complement(442..1326)
                     /locus_tag="VE686_09980"
     CDS             complement(442..1326)
                     /locus_tag="VE686_09980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007537765.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_component: GO:0043190 - ATP-binding cassette (ABC)
                     transporter complex [Evidence IEA];
                     GO_function: GO:0015658 - branched-chain amino acid
                     transmembrane transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid ABC transporter
                     permease"
                     /protein_id="HYY84810.1"
                     /translation="MSTVFGISTPALFGQLLIGLINGSFYAILSLGLAVIFGMLRVIN
                     FAHGAQYMLGAFVAWFLLQYTGMGFWPALIAAPLVVAAVSIVIERTMLARLYQLDHLY
                     GLLLTFGLALVIEGMFRHWFGTSGQPYAPPAQLTGAVNLGFMVLPIYRGFVVIASLVL
                     CIATWLLIEKTKFGAYLRAATENPVLVQAFGVNVPRLLTLTYALGAGLAAVARVLAAP
                     IYQVSPLMGQNIIIVVFAVVVVGGMGSILGAIVTGYGLGVLEGLTKVFYPQASSTVIF
                     IVMAIVLLIRPAGLFGRE"
     gene            complement(1345..2049)
                     /locus_tag="VE686_09985"
     CDS             complement(1345..2049)
                     /locus_tag="VE686_09985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006205659.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HYY84811.1"
                     /translation="MTEPLLSIRGLQAWYGESHVLHGVDLEVRQGETVTLLGRNGAGK
                     STTLKSIMGVIRRRKGEIRLKGEDIGGLALHQVAYRGLGYVPEERGIFASLTVDENLT
                     LPPTVAPGGFSTDEIYTLFPNLKERRSSQGTKLSGGEQQMLAIARILRTGASILLLDE
                     PTEGLAPVIVQRIGDVIRTLKQRGMTVLLVEQNFRFARRVADRYYVMEDGRMIDAFTA
                     AELPSRIDRLHETLGV"
     gene            complement(2042..2782)
                     /locus_tag="VE686_09990"
     CDS             complement(2042..2782)
                     /locus_tag="VE686_09990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009208877.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HYY84812.1"
                     /translation="MLSATGLTKEFKGFVAVKDVNLAVREGSIHALIGPNGAGKTTVF
                     NLLTKFLTPTRGQITFRGQDITRLAPADVARLGLVRSFQISAVFGHLSVLDNVRVALQ
                     RPRNLATQFWKPDSVLEELNDRAMELISAVGLDSYARTVAVELPYGRKRALELATTMA
                     LEPTVMLLDEPMAGMAHEDIDEIGALIRNVAKGRTVVMVEHNLHVVADLCDFVTVLQR
                     GEVLAEGSYDEVSRDPRVREAYMGTEID"
     gene            complement(2863..>3192)
                     /locus_tag="VE686_09995"
     CDS             complement(2863..>3192)
                     /locus_tag="VE686_09995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002972126.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HYY84813.1"
                     /translation="FMERTGRMPNMIHSGTYSAVTQYLKAVQAAGTDATEPVAKKIHE
                     MPVDDFFARNGKVLANGRMIHDMYLFQVKAPEESKAPWDYYKHLSTIKGDQAFATLQE
                     SGCQVTQ"
BASE COUNT          544 a         1008 c         1169 g          471 t
ORIGIN      
        1 cctcgccgcc cgtgaagggc gcctgcaggc aaaagaagaa gaacatctgc gcgagcgcga
       61 gcgtgatcat ggagaagtag atgccgctgc ggcggatggc gagatagccg acgacgacgc
      121 cgagcgccgc cgcgaaggcg acgccgagga ggatccccgt caacggctcg aggccccagt
      181 gcttgaccgt gtaggcggtg atgtaggccg cgccgccgaa gaagcaggca tgcccgaagg
      241 agagcaggcc gacgtagccg atgagcaggt tgaaggcggc ggcgaacagg ccgaagcaca
      301 gcaccttcat catgaacacg gggtagagga cgaagggcgc caccgcgagg acggcgatgc
      361 cgagggcggc gaggaggccg gtgttctcgg acagcccccg ccaggaggcg aagggcgagc
      421 gcagctcggc ttgcagtgcc atcattccct cccgaacagg cccgcgggcc ggatcaggag
      481 cacgatcgcc atcacgatga agatgacggt gctcgaggcc tgcggataga aaaccttggt
      541 cagcccttcg aggaccccga ggccgtagcc ggtgacgatg gcgccgagga tcgagcccat
      601 gccgccgacc accacgaccg cgaacaccac gatgatgatg ttctgcccca tgagcgggct
      661 cacctggtag atgggcgccg cgagcacgcg ggcgaccgct gcgaggcccg ccccgagcgc
      721 gtaggtcagg gtcaacagcc gagggacgtt cacgccgaag gcctgcacga ggaccgggtt
      781 ctcggtcgcg gcgcgcagat aggcgccgaa cttcgtcttc tcgatgagga gccacgtggc
      841 gatgcacagg acgagcgacg cgatcaccac gaagccgcgg tagatcggca gcaccatgaa
      901 gccgaggttc accgcgccgg tgagctgcgc cggcggcgca tagggctggc ccgaggtccc
      961 gaaccagtgc cggaacatgc cctcaatgac gagggcgagg ccgaaggtga ggagcagccc
     1021 gtagaggtgg tcgagctggt aaaggcgggc cagcatggtg cgctcgatga cgatgctcac
     1081 cgccgcgacg acaagggggg ccgcgatcag cgccggccag aagcccatgc cggtgtactg
     1141 cagcaggaac cacgccacga aggcgccgag catatactgc gcgccgtggg cgaagttgat
     1201 cacccgcagc atgccgaaga tgacggcgag gccgaggctc aggatggcgt agaacgagcc
     1261 gttgatcagc ccgatcagca gctggccgaa cagggcgggg gtggagattc cgaaaacggt
     1321 cgacatgcgg gctccggaga ggggctagac gccgagggtc tcgtgcaggc ggtcgatgcg
     1381 gctcggcagc tcggccgccg tgaaggcgtc gatcatgcgg ccgtcctcca tgacgtagta
     1441 gcggtcggcg acgcgccgcg cgaagcggaa gttctgctcg acgagcagca ccgtcatgcc
     1501 gcgctgcttc agggtccgga tgacgtcgcc gatgcgctgc acgatgaccg gcgccaggcc
     1561 ctccgtcggc tcgtcgagga ggaggatgct ggcgcccgtg cgcaggatgc gcgcgatggc
     1621 gagcatctgc tgctcgccgc ccgagagctt ggtgccctgg ctcgagcggc gttccttgag
     1681 gttcgggaac agcgtgtaga tctcgtcggt cgagaagccg cccggcgcga ccgtcggggg
     1741 cagggtcagg ttctcgtcga cggtcaggct cgcgaagatg ccgcgctcct cgggcacgta
     1801 gccgaggccg cggtacgcca cctggtgcag cgccagcccg ccgatgtcct cgcccttgag
     1861 ccggatctcg cccttgcggc ggcggatcac gcccatgatc gacttgaggg tggtgctctt
     1921 gccggcgccg ttgcggccga gcagcgtgac ggtctcgccc tggcggacct cgaggtcgac
     1981 cccgtgcagg acgtggcttt cgccgtacca ggcctgcagg ccgcggatgg agaggagagg
     2041 ctcagtcaat ctcggtcccc atgtaggcct cgcgcacgcg agggtcgcgg ctcacctcgt
     2101 cgtagctgcc ctcggccagc acctcgccgc gctgcagcac ggtgacgaag tcgcacaggt
     2161 cggcgacgac gtgcaggttg tgctccacca tgacgaccgt gcggcccttg gcgacgttgc
     2221 ggatgagcgc gccgatctcg tcgatgtcct cgtgcgccat gccggccatg ggctcgtcga
     2281 ggagcatcac ggtcggctcg agcgccatgg tggtggcgag ctcgagcgcc cgcttgcggc
     2341 cgtagggcag ctcgaccgcg accgtgcggg cgtaggagtc gagccccacc gcggagatca
     2401 gctccatggc gcggtcgttg agctcctcga gcacgctgtc gggcttccag aactgggtcg
     2461 cgaggttgcg agggcgctgc agcgcgacgc gcacgttgtc gagcacggag aggtgcccga
     2521 acaccgccga gatctggaac gagcgcacga gcccgagccg cgccacgtcg gccggcgcga
     2581 gcctggtgat gtcctgcccg cggaaggtga tctggccccg ggtcggggtc aggaacttgg
     2641 tgagcagatt gaagaccgtc gtcttgccgg cgccgttcgg gccgatgaga gcgtggatcg
     2701 agccctcgcg cacggcgagg ttcacgtcct tcacggcgac gaagcccttg aactccttgg
     2761 tcagccccgt cgcggacagg atcggcgcgg ccggtgccga ggcggcggcc gcatcctgcg
     2821 ggacggctgg ggcaatcgat gcgctcaccg ggtgcccctt ttttactgcg tcacctggca
     2881 gccgctttcc tgcagggtcg cgaaggcctg gtcacccttg atggtcgaga ggtgcttgta
     2941 atagtcccat ggcgccttgc tctcctccgg cgccttgacc tggaacaggt acatgtcgtg
     3001 gatcatgcgc ccgttcgcca ggaccttgcc gttgcgggcg aaaaagtcgt cgacgggcat
     3061 ctcgtggatc ttcttggcaa ccggctcggt ggcgtccgtg ccggccgcct ggacggcctt
     3121 gaggtactgg gtgacggccg agtaggtgcc ggagtggatc atgttgggca tgcggccggt
     3181 gcgctccatg aa
//
LOCUS       DASQWN010000533         4830 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_839965, whole genome shotgun sequence.
ACCESSION   DASQWN010000533 DASQWN010000000
VERSION     DASQWN010000533.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 4830)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4830)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4830
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_839965"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            26..562
                     /gene="thpR"
                     /locus_tag="VE686_10000"
     CDS             26..562
                     /gene="thpR"
                     /locus_tag="VE686_10000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009493682.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008664 - 2'-5'-RNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0008033 - tRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA 2',3'-cyclic phosphodiesterase"
                     /protein_id="HYY84814.1"
                     /translation="MPRLFTGLEIPGDVGLELSGYRGGLPGARWVDPENYHITLRFIG
                     DVDHATARDLFSLLGDGRRRGPLTVTLDELATFGGERPRAVFARAVPTSDLNELQSEH
                     ERLVRRVGLPPERRKFTPHVTLARLRDASPIDVAGYIGMRGRFPKLSFMARRFVLFSA
                     RASTGGGPYVVEAAYPLG"
     gene            646..1323
                     /locus_tag="VE686_10005"
     CDS             646..1323
                     /locus_tag="VE686_10005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009492693.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ParA family protein"
                     /protein_id="HYY84815.1"
                     /translation="MNVLVFASRKGGSGKSTLTAHLGAHIAKQSRPTLLVDADPQGSI
                     SLWHSLREAEQPVLKRATRGLQDAVKQAKRSGFEWVLVDTPPVKSAVVADAVRLATFV
                     VIPTRPSMFDLDAVRDTIALCRQLRRPYAVVINGAPAKRNDAEASVVADARRQLAEMD
                     APVWSGQLTSRGDYALSLAAGEGAREFDRESFATAEVAKLWSAVDRSVRAINAAHQKA
                     RTQRVAA"
     gene            1448..2638
                     /locus_tag="VE686_10010"
     CDS             1448..2638
                     /locus_tag="VE686_10010"
                     /EC_number="2.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009762969.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA];
                     GO_process: GO:0008360 - regulation of cell shape
                     [Evidence IEA];
                     GO_process: GO:0071555 - cell wall organization [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="murein L,D-transpeptidase family protein"
                     /protein_id="HYY84816.1"
                     /translation="MGASLQAIRFSLSILLFGAFASAAIAAPSGYSKEAAPIPGPTLA
                     AMRAKDTGPSSPILMRVFKKEAELEVWKKTSSGRFVHLKTFPICRWSGQLGPKTKEGD
                     RQAPEGFYAVTPAHMNPNSAHHLSFDTGFPNAYDKARGATGSALMVHGTCSSRGCYAM
                     TNEAIEEIYALAREAFAGGQQAFQFQAFPFRMTAENMVKHRTEAHVAFWNQLKEGSDR
                     FEATAEEPIVTVSAGRYAFRRSADPVREAKVAARRAEEDAKTAMLLAEGRGAVRTTYA
                     DGGQHRAFVSLARQGVSLGDVSRPEALAFAGREVVVIPARPKPIQVAAAAPPAPVVKV
                     WPVAPDLPTIQGALRPLPEPLSLFAFAPFNPATADPERPVPGSLKILPARLAEMTPLT
                     FAPI"
     gene            2741..3706
                     /locus_tag="VE686_10015"
     CDS             2741..3706
                     /locus_tag="VE686_10015"
                     /inference="COORDINATES: protein motif:HMM:NF013088.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HYY84817.1"
                     /translation="MADKLERGHRAAARTGVAALESDQDQGRSRVGAKRDDVPRAVAF
                     MMLSAILIPLLNASSKYLTQFYPVVEITWARYAGHFAFMVLVFAPRRGTRLLVSSRPV
                     LQLLRSTLLCLSSLIYISALTWVALPTATAISFTGPMIVTALAPFLLGERVGRTRWLA
                     VGTGFLGAVVIVRPGMDSANQAALLVLASAFASALYQILTRKLASQDPAETSITYIAL
                     AGFVLTSVPLPFVWVTPTSVWDALVFVGLGLFGGFGHYFLVRAFELAPAPVVSPFNYG
                     QLIGAGLLSYTVFGQVPDAWTWIGAAVIVASGIFMLYAERRKARG"
     gene            complement(3714..4124)
                     /locus_tag="VE686_10020"
     CDS             complement(3714..4124)
                     /locus_tag="VE686_10020"
                     /inference="COORDINATES: protein motif:HMM:NF019301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DoxX family protein"
                     /protein_id="HYY84818.1"
                     /translation="MLKRSDDAALLLGRMLVAALLLPTGIDKLLHFSRVVASFAARGL
                     PYPKVWAGFDVAIEVLGPIALIIGLWPRWTALVLIALTLATTWTTYRFGMFGAPFRQQ
                     PQVGALKSLAVIAGLLFYAVSGPGAWSRTALRRG"
     gene            4296..>4830
                     /locus_tag="VE686_10025"
     CDS             4296..>4830
                     /locus_tag="VE686_10025"
                     /inference="COORDINATES: protein motif:HMM:NF024267.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PAS-domain containing protein"
                     /protein_id="HYY84819.1"
                     /translation="MDDQGRLFEIAIDKMRQGLCFFDSDQRLIACNSRYAEIYGLSFA
                     ETSPGTTLAKIAERRRAAGTCPEMTDTEYLQWRDRVATGGRGHDSTVRLCDGRTIAIH
                     HEPMPGGGWVATHDDITASVEAHQRLMASEERHRALVQTGSLMMWRAAPDGTVLEASG
                     WELFSSATIEGLHARDWA"
BASE COUNT          717 a         1713 c         1626 g          774 t
ORIGIN      
        1 acggctgcca ggcaggaggg atgacatgcc ccgcctcttc accggcctcg agatccccgg
       61 cgacgtcggc ctcgagctct cgggctaccg cggcggcctg ccgggcgcgc gctgggtaga
      121 ccccgagaac taccacatca ccctgcgctt catcggcgac gtcgaccacg ccaccgcccg
      181 cgacctgttc tcgcttcttg gtgacgggcg ccggcgcgga cctctgacgg tcaccctcga
      241 cgagcttgcg acgttcggtg gcgagcgccc gcgggcggtg ttcgcccggg cggtgccgac
      301 gagcgacctc aacgagctgc agtccgagca cgagcgcctt gtgcgccggg tcgggctgcc
      361 gcccgagcga cgcaagttca cgccgcacgt gaccctcgcc cgcctacgcg acgcctcgcc
      421 catcgatgtc gccggctaca tcggaatgcg cggccgcttc ccgaagctgt ccttcatggc
      481 ccgccgcttc gtcctgttct cggcgagggc gtcgaccggc ggcggaccgt atgtcgtcga
      541 ggcggcgtac cctctgggtt gaggctccgc ctattcggcg gggcctttaa gccttcattt
      601 accatggccg acacacgctc cggctgtccg tgggagagtt gtgtcatgaa cgtgctcgtt
      661 ttcgcgtcgc gcaagggagg ctcggggaag agcacgctga cggcgcatct cggcgcccat
      721 atcgccaagc agtcccgtcc gacgctgctc gtcgatgccg atccgcaggg ctcgatctcc
      781 ctgtggcatt ccctgcgcga ggccgagcag ccggtcctca agcgggcgac gcgcgggctc
      841 caagacgcgg tcaagcaggc caagcgctcg ggcttcgagt gggtgctcgt cgacacgccg
      901 ccggtgaagt cggcggtggt cgccgatgcg gtgcgcctcg ccaccttcgt cgtcatcccg
      961 acccggccga gcatgttcga tctcgacgcg gtccgcgaca ccatcgcgct ctgccgccag
     1021 ctgcgccggc cttacgcggt cgtcatcaac ggcgcgcccg cgaagcgcaa cgatgcggag
     1081 gcgagcgtcg tcgccgacgc tcggcgccag ctcgccgaga tggacgcgcc agtctggtcc
     1141 ggccagctca cgagccgggg cgactacgcg ctgtcgctcg ccgccggcga gggcgccagg
     1201 gaattcgacc gcgagtcgtt cgcgacggcc gaggtcgcga agctttggag cgccgtcgat
     1261 cgctcggtgc gggccatcaa tgccgcccac cagaaagccc gcacgcagcg cgtggcggcc
     1321 tagcgggccc atggtgcgcc cgccggcctc cttccgggcc gcgtggaacc tctggattgc
     1381 gcgcgagcgc gcattctggc ctcattccct tgcgacatcc ccggccgcga ccgcgtccgg
     1441 agcggtcatg ggggccagtt tgcaggccat acggttcagc ctctccatcc tgctgtttgg
     1501 agcgttcgcc agcgcggcga ttgcggcgcc gagcggttat tccaaggaag cggccccgat
     1561 ccccggcccg accctcgcgg ccatgcgcgc gaaggatacc gggccgtcct cgcccatcct
     1621 gatgcgcgtg ttcaagaagg aagccgagct cgaagtctgg aagaagacat cgagcggccg
     1681 cttcgtccat ctgaagacgt tcccgatctg ccgctggtcc ggccagctcg gccccaagac
     1741 caaggagggc gaccgtcagg cgccggaggg cttttatgcc gtcacgccgg cccacatgaa
     1801 cccgaactcc gcccaccacc tctccttcga taccgggttc cccaacgctt acgacaaggc
     1861 acgcggcgca accgggtcgg cgctcatggt gcatggcacc tgttcgtccc gcggctgcta
     1921 cgccatgacg aacgaggcga tcgaggagat ctacgcgctc gcgcgtgagg ccttcgcggg
     1981 cggccagcag gcgttccagt tccaggcctt cccgttccgg atgacggccg agaacatggt
     2041 caagcaccgc acggaggcgc acgtcgcgtt ctggaatcag ctcaaggaag gctccgaccg
     2101 gttcgaggcg accgccgagg agccgatcgt caccgtgtcg gcgggacgct acgccttcag
     2161 gaggtccgcc gacccggtca gggaggcgaa ggtcgccgcc cgccgggccg aggaagatgc
     2221 caagaccgcg atgctcctcg ccgaaggtcg cggcgccgtg cggaccacct atgcggacgg
     2281 cggacagcac cgcgcctttg tcagcttggc gcgccagggg gtgtccctgg gcgatgtcag
     2341 ccgcccggaa gcgctcgcct ttgcgggccg cgaggtggtg gtcattccgg cccgaccgaa
     2401 gccgatccag gtcgccgccg cggcaccgcc cgccccagtc gtcaaggtat ggcccgtggc
     2461 gccggacctt ccgacgattc aaggagcgtt gcgccccctg cccgagccgt tgtcgctgtt
     2521 cgcctttgcg ccgttcaacc ccgcgacggc ggatcccgag cggccggtgc cgggctcgct
     2581 caagatcctg cccgcccgtc tcgccgagat gacgccgctc accttcgcgc cgatctaggc
     2641 gcaggattca agccggcagt aatcccgaaa gccctgttga gggttgtcga ggctcggccc
     2701 cgcaacgggc cgctggtgct gcgatgacgg cgtgctatcc atggccgaca agcttgagcg
     2761 cgggcatcgt gccgctgcgc gcaccggggt agcggctctg gagtcggacc aggatcaggg
     2821 tcggagccgg gtcggcgcta agcgcgacga cgtcccgcgg gcggtcgcct tcatgatgct
     2881 gtcggcgatc ctcatcccgc tgctcaacgc gtcgtcgaaa tacctgacgc agttctatcc
     2941 tgtcgtcgag atcacgtggg cacgctacgc cgggcacttc gccttcatgg tgctcgtctt
     3001 cgcgccgcgc cgaggcaccc ggctcctggt gtcttcgcgg ccggtgctgc agctgctgcg
     3061 ctcgacgctg ctgtgcctgt cgagcctgat ctacatctcg gccctgacgt gggtggcgct
     3121 gccgaccgcc acggcaatca gcttcacggg ccccatgatc gtcaccgcgc tcgcaccctt
     3181 cctgctcggc gagcgcgtcg gccggacacg gtggctcgcc gtcggcacgg gcttcctcgg
     3241 cgccgttgtg atcgtgcggc ccgggatgga cagcgccaac caggccgccc tgctcgttct
     3301 ggcgagcgcc tttgcctctg ccttgtacca gatcctcacg cgcaagctcg cctcccagga
     3361 tccggccgag acctccatca cctacatcgc gctcgcgggc ttcgtcttga cgagcgtgcc
     3421 gctgccgttc gtctgggtga cgccgacgag cgtgtgggac gcgctggtgt tcgtggggct
     3481 ggggctgttc ggcggctttg gccactactt cctggtgcgc gccttcgagc tcgcgccggc
     3541 gcccgtggtg tcgcccttca actatggcca gctgatcggc gccggcctgt tgagctacac
     3601 ggtcttcggg caagtgcccg atgcctggac gtggatcggc gccgccgtca tcgtcgccag
     3661 cggcattttc atgctctacg ccgagcgcag gaaggcgagg ggctgagcgc gcctcagccc
     3721 cggcgcaggg cggtacggct ccacgccccc ggcccgctga ccgcgtagaa cagcaggccg
     3781 gcgatcaccg ccaggctctt cagcgcgccg acctgcggct gctgccggaa aggcgcgcca
     3841 aacatgccga agcggtacgt cgtccaggtg gtcgcaagcg tcagcgcgat cagcaccagc
     3901 gccgtccagc gcggccacag gccaatgatc aaggcgatgg ggccgagaac ctctatggcc
     3961 acatcgaacc ccgcccacac cttcggatac ggcagtcctc gggcggcgaa cgaggccacc
     4021 acccgcgaga agtggaggag cttatcgatg cccgtaggaa ggagcagcgc ggccacgagc
     4081 atgcgcccga gcagcagggc cgcgtcgtca ctgcgcttga gcacgtctcc cctcccgtcc
     4141 ggccatgtcg agggaagagg attcgcgtta ccgcccggtt accgggcctg caacctcgaa
     4201 gggtgcccag tcgcattcac cggttggcaa catgcctcgc gtaaggaagc ttgcccggtc
     4261 gcgtgcggga gaaaacattg ccggaaggcg ttcgagtgga cgatcagggc cgcctcttcg
     4321 aaatcgcgat cgacaagatg cggcaggggc tgtgcttctt cgatagcgat cagcggctta
     4381 tcgcgtgcaa cagccgctac gcggaaatct atggcctctc gttcgccgag acgagccctg
     4441 gcaccacgct ggccaagatc gcggagcggc gccgcgcggc agggacttgc cccgagatga
     4501 cggacaccga gtacctgcag tggcgcgacc gcgtcgccac gggcgggcgg ggtcacgaca
     4561 gcaccgtcag gctatgcgac ggccgaacga tcgcgatcca tcatgagccg atgccgggcg
     4621 gcggctgggt cgccacccat gacgacatca cggcgagcgt cgaagcgcac cagcgcctga
     4681 tggcttcgga ggagcggcac cgggccctcg tccagaccgg ctcgctgatg atgtggcgcg
     4741 ccgcgcccga cggcaccgtg ttggaagcct ccgggtggga gctgttctcg tccgccacga
     4801 tcgaagggct gcacgccagg gattgggcca
//
LOCUS       DASQWN010000534         3675 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_443200, whole genome shotgun sequence.
ACCESSION   DASQWN010000534 DASQWN010000000
VERSION     DASQWN010000534.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 3675)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3675)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3675
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_443200"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(92..520)
                     /locus_tag="VE686_10030"
     CDS             complement(92..520)
                     /locus_tag="VE686_10030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003605286.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metallopeptidase family protein"
                     /protein_id="HYY84820.1"
                     /translation="MTDWSSLAAPSLADFEHLAEDAFARLPEDFRRLCEGVVIRVEDF
                     PDDETLDVMNCESEFDLLGLFRGVGLAQGGAMMGTGQFPNMVWLYRRPLLDYWASHEE
                     TLGHLVAHVLVHEIGHHFGLSDADMAAIEEAAHDSRAPAS"
     gene            complement(525..791)
                     /locus_tag="VE686_10035"
     CDS             complement(525..791)
                     /locus_tag="VE686_10035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009490815.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY84821.1"
                     /translation="MPDRDHDRDREAGEALERVTRDSESLGGSGIARAGRRLGRHFSG
                     GDAPVEADGAADWAEVWGRRIGRALSLVGVVVLAYLLGVQLKLW"
     gene            1428..1661
                     /locus_tag="VE686_10040"
     CDS             1428..1661
                     /locus_tag="VE686_10040"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY84822.1"
                     /translation="MLRRLILAAGLAVGFAGAAAAAPVSTSAPALPDDVAVAFAKKGG
                     HPAWGHKGGKGKHYGWNRGRHLGWYKHKRKHRW"
     gene            complement(1713..3119)
                     /gene="leuC"
                     /locus_tag="VE686_10045"
     CDS             complement(1713..3119)
                     /gene="leuC"
                     /locus_tag="VE686_10045"
                     /EC_number="4.2.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009490813.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009316 - 3-isopropylmalate dehydratase
                     complex [Evidence IEA];
                     GO_function: GO:0003861 - 3-isopropylmalate dehydratase
                     activity [Evidence IEA];
                     GO_process: GO:0009098 - leucine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydratase large subunit"
                     /protein_id="HYY84823.1"
                     /translation="MASARTLYDKIWDDHVVDVQPDGTALLYIDRHLVHEVTSPQAFE
                     GLRMTGRKLRAPEKTLAVVDHIVPTSNRVNGIDDPEAAIQLAALAENAREFGVEYYNE
                     LDVRQGIVHIIGPEQGFTLPGTTIVCGDSHTSTHGAFGALAQGIGTSEVEHVLATQTL
                     IQNKAKNMRVTVDGQLPAGVTAKDIVLAIIGEIGTAGGTGHVIEYAGEAIRALSMEGR
                     MTVCNMSIEGGARAGMIAPDEKTYAYLKDKPKAPKGDAWDAAMRYWETLRSDYGAHFD
                     KEIRLDAAQLPPIVTWGTSPEDVVSVTGAVPNPDDIADENKRASKWRALEYMGLKPGT
                     RITDITLDRVFIGSCTNGRIEDLRAVAKVVEGRRVADTVSAMIVPGSGLVKMQAEAEG
                     LDAIFKAAGFDWREPGCSMCLAMNADRLEPHERCASTSNRNFEGRQGFKGRSHLVSPA
                     MAAAAAIAGRFVDVRTIG"
     gene            complement(3259..>3675)
                     /gene="rplS"
                     /locus_tag="VE686_10050"
     CDS             complement(3259..>3675)
                     /gene="rplS"
                     /locus_tag="VE686_10050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012114530.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000311 - plastid large ribosomal subunit
                     [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L19"
                     /protein_id="HYY84824.1"
                     /translation="IIQQLEAEEAQRLAGLRKTPEFAPGDTLRVNVRIKEGERERVQA
                     YEGVCIARSGGGLNESFTVRKISYGEGVERVFPVHSPNIDSIKVVRRGKVRRAKLYYL
                     RDRRGKSARIAERTDNRGKTGAAGKAAPRAAPEAAE"
BASE COUNT          571 a         1244 c         1277 g          583 t
ORIGIN      
        1 catgtcgaag aaccttgtgg ccgcgaggac gcaagcgcgg ccggtatgta gcaaacctga
       61 gcctgaacgc ctagcgacgc tacggcagcg cctatgaggc cggcgcgcga ctgtcgtgcg
      121 ccgcctcctc gatggccgcc atgtcggcgt ccgagagtcc gaaatggtgg ccgatctcgt
      181 gcacgaggac gtgggcgacg aggtgcccga gggtctcctc gtgcgaggcc cagtagtcga
      241 ggagcggccg gcggtagagc cagaccatgt tggggaactg ccccgtgccc atcatggcgc
      301 cgccctgcgc gaggccgacg ccacggaaga ggccgagaag gtcgaactcg ctctcgcagt
      361 tcatgacgtc gagggtctcg tcgtccggaa aatcctcgac ccggatgacc acgccctcgc
      421 acaggcgacg aaagtcctcg ggcaggcgcg cgaaagcgtc ctcggcgagg tgctcgaagt
      481 cggcgagcga cggcgccgca aggctcgacc aatcggtcat cggatcacca gagcttgagc
      541 tgcaccccaa gcagataggc gaggacgacg acgccgacca gggacagggc gcggccgatg
      601 cggcggcccc aaacctcggc ccagtcggcc gcgccgtccg cctcgacggg agcgtcgcct
      661 cccgagaagt gccggccgag ccggcgcccc gcccgcgcga tgcctgagcc tccgaggctc
      721 tcactgtcgc gggtgacgcg ctcgagcgcc tcgcccgcct cgcggtcgcg gtcatggtcg
      781 cggtcgggca tgcgatgtcc ttgctcgcgg caagatctac cgctgctacg tgccgtggtc
      841 gagggtgccg ggcccgaccg gcgggttgcg ctagcgccgc ggcggagctc cgacgcaaat
      901 cggctcggca accccggcgt taacgacctg gaacgaccgc ggcccgcagt cgttcggcgc
      961 caagtccacc ttctcagtcc gccaggggcg cgagcccgga ccggcggacc tccgtgtctc
     1021 gtattcgtaa ctcgtcctgc ggatcgagac gcccccaaac gacacctgcg aggacacgct
     1081 gcggccgacg ccccgggtgg tccagctgga ataagactgt gccaacgccg aagtcgccaa
     1141 ccctatggcg agggcggata gaaaaccaag tccaacgcga agcttcatct ttgaatcttc
     1201 ttggatgcga atgcgccgaa caagccacaa cccgggtaaa ttgtcaggaa tcaagacagt
     1261 caaattcgca cgaaatcgcg tgcggaggtt aactccagcc tgcggcaatg ccgtaaagcg
     1321 aaatacttgg tgcggaacgc tcacccccac acgtgtcgtt gtacgagcac gatgccggac
     1381 cgctcgtcgc agacgagcag ggccgcgctg agctggaagg aacaatcatg ctgagacgac
     1441 tgatattggc cgcagggctc gccgtcggct tcgcgggagc ggccgcggcg gcgccggtct
     1501 cgacctccgc acccgccctg ccggacgacg ttgcagtcgc cttcgccaag aagggcggcc
     1561 acccggcctg gggccacaag ggtggcaagg gcaagcacta cggctggaac cgcggccgcc
     1621 acctcggctg gtacaagcac aagcgcaagc accgctggta gcgcgaccgt ccatgagggc
     1681 ggaggtggca agcccctccg cccttccggg catcagccga tggtgcggac gtccacgaac
     1741 ctccccgcga tcgcggcagc ggccgccatg gcgggggaaa cgaggtgcga gcgccccttg
     1801 aagccctggc ggccctcgaa gttgcggttc gaagtcgagg cgcagcgctc gtgcggctcg
     1861 agccggtcgg cgttcatggc gaggcacatg gagcagccgg gctcgcgcca gtcgaaaccg
     1921 gccgccttga agatggcgtc cagaccctcg gcctccgcct gcatcttcac gagcccggag
     1981 ccgggcacga tcatggcgct gacggtatcg gccacgcgcc ggccctcgac cacctttgcg
     2041 acggcccgca ggtcctcgat gcggccgttg gtgcacgagc cgatgaacac ccggtcaagc
     2101 gtgatgtcgg tgatcctggt gcccggcttg aggcccatgt actcgagggc gcgccacttc
     2161 gaggcgcgct tgttctcgtc cgcgatgtcg tccgggttcg gcaccgcgcc cgtgaccgac
     2221 accacgtcct cggggctcgt gccccaggtc acgatcggcg gcaactgcgc ggcgtcgagc
     2281 cggatctcct tgtcgaagtg tgcgccgtag tccgagcgca gggtctccca gtagcgcatg
     2341 gcggcgtccc aggcgtcgcc cttcggggcc ttgggcttgt ccttgaggta ggcgtaggtc
     2401 ttctcgtcgg gcgcgatcat gccggcgcgg gctccgccct cgatcgacat gttgcagacc
     2461 gtcatgcggc cttccatgga cagggcgcgg atcgcctcgc cggcgtactc gatgacgtgg
     2521 ccggtgccgc ctgccgtgcc gatctcgcca atgatggcga gcacgatgtc cttggcggtg
     2581 acgcccgcgg gcagctgccc gtcgacggtc acgcgcatgt tcttggcctt gttctggatc
     2641 agcgtctggg tcgcgagcac gtgctcgacc tccgaggtgc cgatgccttg ggcgagcgcc
     2701 ccgaaggcgc cgtgcgtcga cgtatgcgaa tcgccacaga cgatcgtggt gccgggcagc
     2761 gtgaagccct gctccggccc gatgatgtgg acgatgccct gcctgacgtc gagctcgttg
     2821 tagtattcga ccccgaactc ccgcgcgttc tcggcaagcg ccgcgagctg gatcgccgcc
     2881 tcggggtcgt cgatgccgtt gacgcggttg ctcgtcggca cgatgtggtc gacgacggca
     2941 agcgtcttct cgggcgcgcg cagcttgcgc ccggtcatgc gcaggccctc gaaggcctgc
     3001 gggctcgtca cctcgtggac gaggtggcgg tcgatgtaga ggagcgcggt gccgtcgggc
     3061 tggacgtcga cgacgtggtc gtcccagatc ttgtcgtaca gggtgcgcgc gctggccatc
     3121 ggatgagctc ttcgtctcgt actggagtgc cgtatgtagc gaggcctcgc gcaggcgaaa
     3181 aggcggtcgt tgcgcgcaag ccccggaacg caaaagcgcg gccctgcggc cgcgctggtc
     3241 ggttgaggcc ttgcccgcct actcggcggc ttcgggggcg gcccgaggcg ccgccttgcc
     3301 ggcagcgccc gtcttgccgc ggttgtccgt gcgctcggcg atgcgggccg acttaccgcg
     3361 gcggtcgcgc aggtagtaga gcttcgcccg gcggaccttg ccgcggcgca cgaccttgat
     3421 cgagtcgatg ttcggcgaat gcaccgggaa gacgcgctcg acgccttcgc cgtaggagat
     3481 cttgcggacc gtgaagctct cgttgaggcc gccgcccgag cgcgcgatgc acacgccctc
     3541 gtaggcctgc acgcgctcgc gctcgccttc cttgatgcgc acgttgacgc gcagggtgtc
     3601 gccgggcgcg aactcggggg tcttgcgcag gccggccaag cgctgggcct cttcggcctc
     3661 gagctgctgg atgat
//
LOCUS       DASQWN010000535         3373 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_97874, whole genome shotgun sequence.
ACCESSION   DASQWN010000535 DASQWN010000000
VERSION     DASQWN010000535.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 3373)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3373)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3373
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_97874"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..822)
                     /locus_tag="VE686_10055"
     CDS             complement(<1..822)
                     /locus_tag="VE686_10055"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="urea ABC transporter permease subunit UrtB"
                     /protein_id="HYY84825.1"
                     /translation="MQALTTAFRALALLAGLMLAALSPAAAGDPEAAFAKLATDSYSE
                     VEAGIVALAASGAKTAPAVLDALADARLFVRAADKAVVIKTADGKLLDARTGAEFAGD
                     AADLKPIRLNNRVRRALDAARGSLTLLSPDPDKRLAAAEAVFKGRDTAALPALATAIQ
                     AETDPRIRRVMQEAQAAALLAAPEGTDLDKVTAIEVLSQRGDQDALALLRMQIAQGSP
                     TVKSAAETAAAAIERRLALLANVQNAWYGLSLASVLFLAAIGLAVTFGVMGVINMA"
     gene            complement(1017..2318)
                     /gene="urtA"
                     /locus_tag="VE686_10060"
     CDS             complement(1017..2318)
                     /gene="urtA"
                     /locus_tag="VE686_10060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011474119.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0030288 - outer membrane-bounded
                     periplasmic space [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0033219 - urea binding [Evidence IEA];
                     GO_function: GO:0033221 - ATPase-coupled urea
                     transmembrane transporter activity [Evidence IEA];
                     GO_process: GO:0015840 - urea transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="urea ABC transporter substrate-binding protein"
                     /protein_id="HYY84826.1"
                     /translation="MRRLFGKLGAGAGALAASAIVAGGLSAATAQETIKVGILHSLSG
                     TMAISETTLKDVMLMLIDEQNKKGGLLGKKLEAVVVDPASNWPLFAEKARELITKDKV
                     SAVFGCWTSVSRKSVLPVFKELNSILFYPVQYEGEESERNVFYTGAAPNQQAIPAVDY
                     LMKDEKVQRWVLEGTDYVYPRTTNKILEAYLKSKGVKPEDISINYTPFGHSDWQTRVA
                     AIKKFGSEGKKTAVVSTINGDANVPFYKELGNQGVKATDIPVVAFSVGEEELAGIDTK
                     PLLGHLAAWNYFQSIDTPANKEFIGKWKAFTKNDKRVTNDPMEAHVIGFNMWVKAVEK
                     AGTVDPDKVIDALPGTEAPNLTGGTSKMLANHHITKPVFIGEIKADGQFDVVWKTDGL
                     VPGDAWSKELEGSRDLVADWVTLKCGNYNNATKKCGATASN"
     gene            complement(2635..>3373)
                     /locus_tag="VE686_10065"
     CDS             complement(2635..>3373)
                     /locus_tag="VE686_10065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012317632.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="EcsC family protein"
                     /protein_id="HYY84827.1"
                     /translation="RPSLVARLANIVGRPLEVLGHSLPAPVRDAVSSAAEAALRASLR
                     VALTTLRKEGTPSPRALHGALAAASGAVGGALGLATLPVELPISTTLMLRAIAEIARH
                     EGEDLADPEAALACVQVFALGGRSDADNLADSGYFAVRSALAKSVTEAARFVTERGVA
                     EGAPALVRLAAQIASRFGVVVSQKVAAQAVPVVGAIGGAAVNAAFMNHFRAIARGHFT
                     VRRLERAYGKAPVQVAYDDLRREEGLA"
BASE COUNT          485 a         1120 c         1218 g          550 t
ORIGIN      
        1 ggccatgttg atgacgccca tgacgccgaa ggtgacggcg aggccgatgg cggcgaggaa
       61 gagcacggag gcgagagaga ggccgtacca ggcgttctgg acgttcgcga ggagcgccag
      121 ccgccgctcg atggcggccg ccgccgtctc ggccgcgctc tttaccgtcg ggcttccttg
      181 cgcgatctgc atgcgcagga gcgcaagggc gtcctggtcg ccgcgctgcg acaggacctc
      241 gatggcggtg accttgtcga ggtcggtgcc ctcgggcgcg gcgagcaggg ccgcggcctg
      301 cgcttcctgc atgacgcgtc tgatgcgcgg atcggtctcg gcctggatgg cggtcgcaag
      361 cgccggcagc gcggcggtgt cgcggccctt gaacaccgct tccgctgcgg cgaggcgctt
      421 gtcgggatcg ggtgagagca gggtgagcga accgcgcgcg gcgtcgaggg ctcgccggac
      481 gcggttgttc aggcggatgg gcttgaggtc cgccgcgtcg cctgcgaatt cggcgccggt
      541 gcgagcatcg aggagcttgc cgtccgcggt cttgatgacg acggccttgt cggcggcgcg
      601 gacgaagagg cgcgcgtcgg ccagggcgtc gagcacggct ggcgcggtct tcgccccgct
      661 tgccgcaagc gcgacgatgc ccgcttcgac ttcggaatag ctgtccgtcg cgagcttggc
      721 gaaggcggcc tcgggatcgc cggccgccgc cggcgagagc gcggcgagca taagtccggc
      781 aagcagcgcg agtgctcgga aggcggtagt cagagcctgc atcggatatc ctggcgggtg
      841 cagctgcgct catccctccc cgtgagggga gggcgactta gcgcctgcag gcgctaagcg
      901 gggtggggcg gaacctcggt gctaaccgtg aagcacggtg gttccgcccc acccgggcgg
      961 gcgctgacgc gcccgtctcc gccctcccct cgcggggagg gaggggccgg tgagcctcag
     1021 ttcgacgccg tggcgccgca cttcttcgtg gcgttgttgt agttgccgca cttcagtgtc
     1081 acccagtcgg ccacgaggtc cctcgaaccc tcgagctcct tcgaccacgc gtcgccgggg
     1141 acgaggccgt ccgtcttcca caccacgtcg aactggccgt cggccttgat ctcgccgatg
     1201 aacaccggct tggtgatgtg gtggttcgcc agcatcttgg aggtgccgcc ggtcaggttc
     1261 ggcgcctcgg tgccgggcag ggcgtcgatg accttgtcgg gatcgaccgt gccggccttc
     1321 tcgacggcct tgacccacat gttgaagccg atcacgtggg cctccatcgg gtcgttggtc
     1381 acgcgcttgt cgttcttggt gaacgccttc cacttgccga tgaactcctt gttggcggga
     1441 gtatcgatcg actggaagta gttccaggcc gcgaggtggc cgaggagcgg cttggtgtcg
     1501 ataccggcaa gctcctcctc gccgaccgag aaggcgacca ccgggatgtc ggtcgccttg
     1561 acgccctggt tgccgagctc cttgtagaag ggcacgttgg catcgccgtt gatggtcgac
     1621 acgaccgcgg tcttcttgcc ttccgagcca aatttcttga tcgccgcgac gcgggtctgc
     1681 cagtccgagt ggccgaacgg cgtgtagttg atggagatgt cctccggctt cacgcccttc
     1741 gacttgaggt acgcctcgag gatcttgttg gtggtgcgcg gatagacgta gtcggtgccc
     1801 tcgagcaccc agcgctgcac cttctcatcc ttcatcaggt agtcgacggc cgggatcgcc
     1861 tgctggttcg gggcggcgcc ggtgtagaac acgttgcgct cgctctcctc accctcgtac
     1921 tggacggggt agaagaggat cgagttgagc tccttgaaca ccggcagcac ggatttccgc
     1981 gacacggaag tccagcagcc gaacacggcc gacaccttgt ccttggtgat gagctcgcgc
     2041 gccttctcgg cgaagagcgg ccagttcgac gccgggtcga ccaccaccgc ctccagcttc
     2101 ttgcccagca ggccgccctt cttgttctgc tcgtcgatga gcatgagcat cacgtccttc
     2161 aacgtcgtct ccgagatcgc catcgtcccc gagagcgagt ggaggatgcc gaccttgatg
     2221 gtttcctggg cggtggcggc cgagaggcct cccgccacga tcgcgctcgc ggccagcgca
     2281 cccgcgcccg ctccgagctt tccgaacagt ctccgcatgc accgctcccc tgtgagtgac
     2341 gggccgccaa gcagcctccg ccacccaacc gcaaggcgcg tgccacatcg ggaatgacac
     2401 gcgtcatccc tccccgcgag gggagggcgg agacgggcgc gtcagcgccc gcccgggtgg
     2461 ggcgaaaacc tccgtgcttg gacgataggc tccgggcttc cgccccaccc cggtcgcgcc
     2521 tgcaggcgcg actcgccctc ccctcgcggg gagggatgaa gcggctatgc tgcacacgaa
     2581 agcggcagct tgggccggga ggctaattcg taggcaggag gcctggctgg ggtgtcaggc
     2641 gaggccttct tcgcggcgaa ggtcgtcgta ggcgacctgg acgggggcct tgccgtaggc
     2701 gcgctcaagg cggcgcacgg tgaagtgccc gcgggcaatt gcccggaagt ggttcatgaa
     2761 ggcggcattg acggccgcgc cgccgatggc gccgaccacg gggaccgctt gcgcggcgac
     2821 cttctgcgac accaccacgc cgaagcggga ggcgatctgg gcggcaaggc gcacgagggc
     2881 cggggcaccc tcggcgacac cgcgctccgt cacgaaacgc gccgcctcgg ttacggactt
     2941 ggcgagcgcg ctgcgcacgg cgaagtagcc gctgtcggcg agattgtcgg cgtccgagcg
     3001 gccaccgagg gcgaagacct ggacgcaggc gagagccgcc tcggggtcgg cgaggtcctc
     3061 gccctcgtgg cgcgcgatct cggcaatcgc gcgcagcatc agcgtcgtcg agatcggtag
     3121 ctcgacgggg agcgtcgcta ggccgagggc gcccccgaca gcccccgaag cggccgcaag
     3181 cgcgccgtgc aacgcgcgcg gggagggcgt cccctccttg cgcagggtcg tgagcgcgac
     3241 tcgaagcgac gcccgcagcg cggcctcggc ggcgctcgat acggcgtccc gcaccggcgc
     3301 ggggagcgag tgcccgagca cctcgagcgg cctaccgacg atgttggcga ggcgcgcgac
     3361 gaggcttggc cgc
//
LOCUS       DASQWN010000536         3265 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_145873, whole genome shotgun sequence.
ACCESSION   DASQWN010000536 DASQWN010000000
VERSION     DASQWN010000536.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 3265)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3265)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3265
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_145873"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..198
                     /locus_tag="VE686_10070"
     CDS             <1..198
                     /locus_tag="VE686_10070"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY84828.1"
                     /translation="PAPGTAGSSGRAAPANTLNRTTGASGGRAPGTEDVSRNTQDRLS
                     DLERKSREIDRKVMRSICNGC"
     gene            333..1529
                     /gene="zapE"
                     /locus_tag="VE686_10075"
     CDS             333..1529
                     /gene="zapE"
                     /locus_tag="VE686_10075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012332030.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0051301 - cell division [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein ZapE"
                     /protein_id="HYY84829.1"
                     /translation="MNQQAPPSHAGPILARYDALVLRGAIERDPGQVALSRKLDALLT
                     ALADHELASKASALGWLFGKRAPAGPPRGIYVWGSVGRGKTMLMDLFFEALTVRRKRR
                     VHFHAFMADVHQRIHAWRQALKAGEVSGDDPIRPVAAALAQEHWILCFDEFAVTDIAD
                     AMILGRLFTALFAEGVVVVSTSNVPPDELYKGGLNRALFVPFIELLKQNMEVVELDAR
                     TDFRLEKLGDTPVYFVPADKTARKMLDSLFARLTGNATPKPVRLMVQGHPVEVPAQAM
                     GVARLSYGDVCQRPLGAADYIALARAYHTVIIDDVPVIAPDRRDEAKRFINLVDILYE
                     RHVKLIVSAQAEPSELYRADDGHEAFEFARTVSRLAEMRSREYLALPRGRGHAVTGNT
                     TGIVET"
     gene            1540..2157
                     /locus_tag="VE686_10080"
     CDS             1540..2157
                     /locus_tag="VE686_10080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015927826.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TetR family transcriptional regulator"
                     /protein_id="HYY84830.1"
                     /translation="MSRLPHPVPAPATDARLLTIAAEHLRRLGPRRVTVVGIAQAAGM
                     THANVYRYFPSKTALIDAVAAQWLRRLELGLAEIADAPDPADDKLERLLVAIAQGNRG
                     LLARDRHLFEVYAAAAETSRGFVRKHRARVRVLAERVIDEGIATGAFEPRDRDRAIAF
                     VFDAAHRFINPVAVRVDADMPQEMFDARLGATIQAIQRVLASGGL"
     gene            2301..3263
                     /gene="mdh"
                     /locus_tag="VE686_10085"
     CDS             2301..3263
                     /gene="mdh"
                     /locus_tag="VE686_10085"
                     /EC_number="1.1.1.37"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012332032.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016616 - oxidoreductase activity, acting
                     on the CH-OH group of donors, NAD or NADP as acceptor
                     [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="malate dehydrogenase"
                     /protein_id="HYY84831.1"
                     /translation="MARNKIALIGAGQIGGTLAHLVGLKELGDVVLFDIAEGVPQGKG
                     LDIAESAPVDGFDAKYKGANDYSAIEGADVIIVTAGVPRKPGMSRDDLLGINLKVMEA
                     VGNGIKQYAPNAFVICITNPLDAMVWALQKFSGLAPNKIVGMAGVLDSSRFRHFLAEA
                     FDVSVEDVTAFVLGGHGDDMVPLVRYSTVAGIPLPDLVKMGWTSQEKLDAMVERTRKG
                     GGEIVNLLKTGSAFYAPAASAIAMAESFLKDKKRVLPCAAYLTGQYGVDGLFIGVPIV
                     IGANGVERILEIELSADERAMLDKSLASVTSLVEACKGINGALA"
BASE COUNT          508 a         1184 c         1077 g          496 t
ORIGIN      
        1 ccggcacccg ggacggccgg cagctcgggc cgcgccgccc ccgccaacac cctgaaccgc
       61 accaccggcg cctccggcgg gcgcgcaccc ggcaccgagg acgtctcccg aaatacccag
      121 gaccgcctct cggaccttga gcgcaagagc cgcgagatcg accgcaaggt catgcgcagc
      181 atctgcaacg gctgctgacg cgagcgtttc caggccccgt gcgggctccc ttgtaactgc
      241 ctcgcatctt gcgtcatgcg ccgtagtctg cggccttcgg gcatcgagac ggctgcattg
      301 ctctcgcgcg gcgcggccgc taagtcgccc tggtgaacca acaagcgccg ccttcccacg
      361 ccggcccgat cctggcgcgc tacgacgcgc tcgtgctccg gggcgcgatc gagcgggatc
      421 ccgggcaggt cgccctgtcg cgcaagctcg acgccctcct gacggcgctc gccgatcacg
      481 agctcgcgtc gaaggcgagc gcactcggct ggctgttcgg caagcgtgcg cccgcggggc
      541 cgccgcgcgg catctacgtc tggggctcgg tcgggcgcgg caagaccatg ctcatggacc
      601 tgttcttcga ggccctgacg gtgcggcgca agcgcagggt ccacttccac gccttcatgg
      661 ccgacgtgca ccagcgcatc cacgcgtggc gccaggcgct gaaggccggc gaggtgagcg
      721 gcgacgatcc catccgcccc gtggcggcgg cgctggcgca ggagcactgg atcctgtgct
      781 tcgacgagtt cgccgtgacc gacatcgcgg acgccatgat cctcggccgg ctgttcacgg
      841 cgctcttcgc agagggcgtc gtggtcgtct cgacctccaa cgtgccgccg gacgaactct
      901 acaagggcgg gctcaaccgc gcgctcttcg tgccgttcat cgagctcctg aagcagaaca
      961 tggaggtcgt ggagctcgac gcccggaccg acttccgcct cgagaagctc ggcgacacgc
     1021 ccgtctactt cgttccggcc gacaagaccg cgcgcaagat gctcgacagc ctgttcgccc
     1081 ggctcaccgg caacgcaacg ccgaagcccg tgcgcctgat ggtgcagggc cacccggtcg
     1141 aggtccccgc gcaagccatg ggcgtggcgc gcctgtcgta cggcgacgtg tgccagcgcc
     1201 cgctcggggc cgccgactac atcgctctcg cccgcgccta ccatacggtg atcatcgacg
     1261 acgtgccggt catcgcaccc gaccggcgcg acgaagccaa gcgcttcatc aacctcgtcg
     1321 acatcctcta cgagcgccac gtgaagttga ttgtctcggc gcaggcggag ccgtccgagc
     1381 tgtaccgcgc cgacgacggc cacgaggcgt tcgagttcgc ccgcacggtg tcgcgcctcg
     1441 ccgagatgcg gtcgcgggag tacctggcgc tgccgcgcgg tcgcggccac gcggtgaccg
     1501 gcaacaccac cgggatcgtc gagacgtgag cggccgggga tgagccggct gccccatccc
     1561 gtccccgccc cggcaacgga tgcccgcctc ctgaccatcg cggccgagca cctgcgccgg
     1621 cttgggccgc ggcgcgtcac ggttgtcggc atcgcccagg cggcgggcat gacgcacgcc
     1681 aacgtctatc gctactttcc gtccaagact gcgctcatcg acgccgtggc ggcgcagtgg
     1741 ctgaggcggc tcgagctcgg gctcgccgag atcgccgacg cgcccgaccc tgccgacgac
     1801 aagctcgagc ggctgctggt cgccatcgcg caggggaacc ggggactgct cgcccgcgac
     1861 cgccacctgt tcgaggtcta cgcggctgcg gccgagacct cgcggggctt cgtgcgcaag
     1921 caccgcgctc gggtccgggt tctcgccgag cgggtcatcg acgagggcat cgcgacgggc
     1981 gctttcgagc cgcgggaccg cgatcgcgcc atcgccttcg tgttcgacgc cgcgcatcgc
     2041 ttcatcaatc cggtcgccgt ccgtgtcgac gccgacatgc cccaggagat gttcgacgcg
     2101 cgcctcggcg ccacgatcca ggccatccag cgcgtgctcg cgtcgggtgg gctatagaat
     2161 gacaaaagtc agagaatgta acagctcgcc gccgcacggc gacgcggtgc accttatctc
     2221 gcttgaagcg ggcgctctct tctgtctaaa gaggcgcgcg cgtcagcgcg gcctcgccgc
     2281 gcctccccaa ggattccgca atggctcgta acaagatcgc gttgatcggc gccggacaga
     2341 tcggcggcac gctggcccac ctcgtcggcc tgaaagagct cggagacgtc gtcctgttcg
     2401 acatcgccga gggcgtgccc cagggcaagg gcctcgacat cgccgaatcg gcgccggtcg
     2461 acggcttcga cgccaagtac aagggcgcca acgattactc ggcgatcgaa ggcgccgacg
     2521 tgatcatcgt caccgccggc gtgccccgca agcccggcat gagccgcgac gatcttctgg
     2581 gcatcaacct caaggtcatg gaggcggttg gcaacggcat caagcagtac gcgccgaacg
     2641 ccttcgtcat ctgcatcacc aacccgctcg acgccatggt ctgggcgctg cagaagttct
     2701 cgggcctggc cccgaacaag atcgtgggga tggccggcgt gctcgattcc tcgcgcttcc
     2761 gccacttcct cgccgaggcc ttcgacgtat cggtcgagga cgtcaccgcc ttcgtgctcg
     2821 gcggccacgg cgacgacatg gtgccgctcg tgcgctactc gacggtggcc ggcattccgc
     2881 tgcccgacct cgtcaagatg ggctggacaa gccaggagaa gctcgacgcc atggtcgagc
     2941 ggacccgcaa gggcggcggc gagatcgtca acctgctcaa gaccggctcg gccttctacg
     3001 cgccggcggc ctccgccatc gccatggccg agagctttct caaggacaag aagcgcgtcc
     3061 tgccctgcgc ggcatatctt accggccagt acggggtgga cggcctgttc atcggcgtgc
     3121 cgatcgtgat tggggcgaac ggcgtcgagc gcatcctcga gatcgagctc tcggccgacg
     3181 agcgggccat gctcgataaa tcgctcgcct cggtgacgag cctcgtcgag gcctgcaaag
     3241 gcatcaacgg agcgctggcc taagg
//
LOCUS       DASQWN010000537         4137 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_443625, whole genome shotgun sequence.
ACCESSION   DASQWN010000537 DASQWN010000000
VERSION     DASQWN010000537.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 4137)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4137)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4137
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_443625"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1014
                     /locus_tag="VE686_10090"
     CDS             <1..1014
                     /locus_tag="VE686_10090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012753786.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="magnesium and cobalt transport protein CorA"
                     /protein_id="HYY84832.1"
                     /translation="TLEPHAVTAASARAEPGVVASAAYMAGRRVAAVPIEEAGAWSRK
                     PGHVVWIGLHEPSLELLRRVQAQFGLHELAIEDALKAHQRPKLEQYREALFVVARTAQ
                     MVEGRISFGETHLFVGRGYVVSVRHGASTSYTPVRERCEGSPTDLSNGEDFILYAILD
                     FIVDNYMPVIEAIHTEVEAIEDTVLTGNPTQAQVTRLYQLRRDLLRLRNAAVPLVEVC
                     RRLEQPGLPGIDSSLHPLFRDVSDHIRRVQEEIESLREVLAFAFESSLMTGQAQQTEI
                     TRKLAAWAAMLAVPTAIAGIYGMNFEYMPELKWRYGYFIVLAIILGVCGALYWRFRLN
                     RWL"
     gene            1131..2285
                     /locus_tag="VE686_10095"
     CDS             1131..2285
                     /locus_tag="VE686_10095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015927525.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YncE family protein"
                     /protein_id="HYY84833.1"
                     /translation="MRKIMSALAIGGIAIVSASGARAEIAVSANDGKAYLDNGVAKTV
                     PNAPPDTVAVIDLSANPPKLLAEIQAPASVAGPPGSVAVAADESFALVTGAMKVDPSD
                     PTKQAPDDKLTFIDLKSSPPKVVQTVTVGKGAAGVSINKAGNLALVANRSEGTVSVLS
                     ISGGKVEEKEKIKLGAADSGPSMPVFSRDGTFALVTRDNDHKISVLSISGDKVEYTKR
                     DINAGLRPYQVDITGSGDIAIVANIGLGGGDADTISVIDLKAKPARVVNTVTVGQTPE
                     GLKMSPDGQHVAVTVMNGSNKPKDSPFFNDNGLVRIFRVAGRDLTHVADAPVGHWCQG
                     AAWSKDAKTVLVQCMVEKEIYAFSFDGKTLQKTTAIKVNGGPAGIRTAEP"
     gene            2341..3549
                     /locus_tag="VE686_10100"
     CDS             2341..3549
                     /locus_tag="VE686_10100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009029192.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0019104 - DNA N-glycosylase activity
                     [Evidence IEA];
                     GO_process: GO:0036297 - interstrand cross-link repair
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="crosslink repair DNA glycosylase YcaQ family
                     protein"
                     /protein_id="HYY84834.1"
                     /translation="MAAVRASRLALAHARHIWLRAQGLHTRRPFGDGPEATLAAVEHL
                     GYVQIDTINVIERCHHHILWTRIPTYRREHLHRAQAVDKTVFEYWTHALAYVPTSAYR
                     FFMPEMARRRATPGGWFGAVDPADVRRVLSLIRKEGPLSIRDIADDVLVDKNHPWASR
                     KPSKRALQLAFFTGALTVSARSGMLKTYELAERHFGWERRPRPASEQRVADYMLDRTL
                     RAQGVVSLDSICHLDVKRKPAVRRAIEARLRRRRLRAVALEGAERVEHWAAPEALEEG
                     FGEKNEDLTHVLSPFDPLIIQRKRLKLFFGYQHRFEAYVPKEKRSFGYFALPVLVGDE
                     IVAAIDLKADRRRGRLQVQQWTWLNPRSADAHKARVEEELHRFEEFQIGQNADETTKD
                     RLSAPSLALR"
     gene            3638..>4137
                     /locus_tag="VE686_10105"
     CDS             3638..>4137
                     /locus_tag="VE686_10105"
                     /EC_number="2.7.7.65"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011441054.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diguanylate cyclase"
                     /protein_id="HYY84835.1"
                     /translation="MLHSIRGKFAVVLLLGLAFGCLAGVGLQATNGDGGSDFSQPALV
                     IGTLTLVVMLLVERIVINPITNLTRDVVAIKNAEASVRLRVKGNDEVATLGTAFNDLL
                     EHLEERKRLEAQLLHMARHDALTGLPNRVLFQEHLGQELARGGRRGEDLALLCIDLDL
                     FKEVNDT"
BASE COUNT          738 a         1349 c         1366 g          684 t
ORIGIN      
        1 acgctcgaac cgcacgccgt cacggccgca agcgcccgcg ccgagcccgg agtcgtcgcc
       61 tcggcggcct acatggcggg ccggcgcgtt gccgcggtgc cgatcgagga ggccggcgca
      121 tggtcacgca agcccggaca cgtcgtctgg atcggcctcc atgaacccag tctcgaactc
      181 ctcaggcgcg tgcaggcgca gttcggtctg cacgagcttg caatcgagga tgcgctgaag
      241 gcgcaccagc ggccgaagct cgagcagtac cgcgaggcgc tgttcgtggt cgcccgcacg
      301 gcgcagatgg tggaggggcg gatctcgttc ggcgagacgc atctgttcgt cgggcgcggc
      361 tacgtcgtct ccgtccgcca cggcgcttcc acgtcgtaca cgcccgtgcg tgagcgctgc
      421 gaaggcagcc caacggatct gtcgaacggc gaagacttca tcctctatgc gatcctcgac
      481 ttcatcgtcg acaactacat gcccgtcatc gaggcgatcc acaccgaggt cgaagccatc
      541 gaggatacgg tcctgacggg aaatccgacg caggcgcagg ttacgcggct gtatcagctg
      601 cggcgtgacc tgctccggtt gcgcaacgca gcggtcccgc tcgtcgaggt gtgccgccgc
      661 ctcgagcaac ccgggctgcc cggcatcgac tcctccctgc atcccctgtt tcgcgacgtg
      721 tctgaccaca tccgtcgcgt ccaggaggag atcgagtcac tgcgagaagt gctggcgttc
      781 gcgttcgagt cgagcctcat gaccgggcag gcccagcaga ccgagatcac ccggaagctg
      841 gcggcatggg cggcgatgct ggcggtcccg accgccatcg ccggcatcta cggcatgaac
      901 ttcgaataca tgcccgagct gaagtggcgg tacggctact tcatcgtcct tgcgatcatc
      961 ctcggcgtct gcggtgccct gtattggcgt ttccggctga atcggtggct ctgatcgcat
     1021 cgagggctgc gtttgccgcg gagcagcgct tactgctgtt caagctccgc cgcttcgggc
     1081 taggctggag ggaagggcgg tcgagcacgc ccacagcggg aggttcagca atgcgcaaga
     1141 tcatgtcggc gctggcgatc ggcgggatcg cgatcgtgag tgcgtcgggc gcgagggccg
     1201 agatcgcggt gtccgccaat gacggcaaag cgtacctgga caacggcgtt gccaagaccg
     1261 tcccgaacgc accgcccgac acggtggcgg tgatcgatct ctcggcgaac ccgccgaagc
     1321 tgctggctga gatacaagcg ccggcgagcg ttgctggccc gccaggcagc gtcgccgtgg
     1381 cggccgacga gagcttcgcc ctagtgaccg gcgccatgaa ggtggatccc tccgatccga
     1441 ccaagcaggc tcccgacgac aagctcacgt tcatcgacct gaaatcctcg ccgccgaaag
     1501 tcgtgcagac cgtgacggtc ggcaagggcg cagcgggcgt gtcgatcaac aaggccggca
     1561 acctcgcact tgtggccaac cgaagcgagg gcaccgtgtc ggtgctgtcg atcagcggcg
     1621 gcaaggtcga ggaaaaggag aagatcaagc tcggggccgc cgactccggc ccaagcatgc
     1681 cggtcttctc gcgcgacggc acattcgccc tcgtgacacg cgacaacgac cataagatct
     1741 cggttctttc catttccggc gacaaggtcg agtacacgaa gcgcgacatc aacgccggcc
     1801 tacggcccta tcaggtcgac atcaccggat ccggcgacat cgccattgta gccaacatag
     1861 gtctcggcgg cggtgacgcc gatacgatca gcgtcatcga cctcaaggca aagccggcgc
     1921 gcgtcgtcaa cacagtcacc gtggggcaga cgcccgaggg cctcaagatg tcgccggatg
     1981 gccagcacgt cgccgtgacg gtgatgaacg gctcgaacaa accgaaggac tcgccgttct
     2041 tcaacgacaa cggccttgtc aggatcttcc gtgttgcggg ccgcgacctc acgcacgtcg
     2101 cggatgctcc cgtcgggcat tggtgccagg gcgcagcgtg gtccaaggac gcgaagacgg
     2161 tcctggtcca gtgcatggtc gagaaggaaa tctacgcctt ctcgttcgac ggcaagacgc
     2221 tgcagaagac cacggccatc aaggtcaatg gaggcccagc tggcatccgt acggccgagc
     2281 cataggagcg aaggggcggc tttagcacgg ccccggtgag gacgccgggg ctggtcctgc
     2341 atggcagccg tacgcgcatc ccggctggct ctcgcgcacg ccaggcacat ctggctgcgg
     2401 gcgcaggggc tgcacacgcg acgcccgttc ggggatggac ccgaggcgac gctggcggcc
     2461 gtggagcacc tcggctacgt gcagatcgat accatcaatg tcatcgagcg ctgtcaccac
     2521 cacatcctct ggacgcgcat tccgacctac cggcgcgagc atctccatcg cgcccaggcg
     2581 gtcgacaaga ccgtcttcga gtactggacg cacgccttgg cgtacgtgcc gactagtgcc
     2641 taccgcttct tcatgcccga aatggcgcgt cgccgcgcga ccccgggcgg ctggttcggc
     2701 gccgtcgacc ctgccgacgt tcgccgggtg ttgtccctca ttcgcaagga ggggccgctc
     2761 tcgatccgcg acatcgcaga cgacgtcctc gtggacaaga accacccgtg ggccagccgg
     2821 aagccgtcca agcgggcgct gcagctggcg ttcttcacgg gtgcgctgac cgtcagcgcg
     2881 cgctcaggaa tgctgaagac gtacgagttg gcggagcgcc atttcgggtg ggagcgacgg
     2941 ccccggccgg cgtccgagca acgggtcgcc gactacatgc tggaccgcac cctgcgcgcg
     3001 caaggcgtcg tcagtctcga ctccatctgc catctcgatg tgaagcggaa gcccgccgtc
     3061 cggcgcgcca tcgaagcacg cctccggcgc cgtcgcttga gggcggttgc cctcgagggc
     3121 gcggaacgcg tcgagcattg ggccgcgccc gaggcgctgg aggaagggtt cggagaaaag
     3181 aacgaggatc tcactcacgt gctgtcgccg ttcgatccgc tcatcatcca gcgcaagcgg
     3241 ctgaagctgt tcttcggcta ccagcatcgg tttgaggcgt acgtgccgaa ggagaagcgg
     3301 agctttggct attttgccct gccggtgctc gtcggcgacg agatcgtggc ggcgatcgac
     3361 ctcaaggccg atcgtcgcag ggggcggctt caggtccagc aatggacctg gctcaacccc
     3421 agatcagccg acgcccacaa ggctcgggtg gaggaagaac tgcatcggtt cgaagagttc
     3481 cagatcgggc agaacgcaga tgagaccacc aaggaccgtc tttctgcgcc ctcattagcc
     3541 cttcgctaac ttggctgctt aaggcgccgt ttcgctttgg ccgttacagc ttccggccta
     3601 acgccggagg tcggccggca tagcgaggca gactgcaatg cttcattcta ttcgcggaaa
     3661 gttcgcagtg gtgctgctgc tggggctggc attcggctgc ctcgccggcg ttggattgca
     3721 ggcgaccaac ggcgatgggg ggtcggactt cagccagccc gcgctcgtca tcggtacgct
     3781 cacgctcgtg gtcatgcttc tggtggagcg gatcgtcatc aacccgatca cgaacctcac
     3841 gcgcgacgtg gtcgcgatca agaacgccga ggccagcgtc cgcttgcggg tcaagggcaa
     3901 cgacgaagtc gcgaccctgg gcactgcttt caacgatctc ctagagcacc tcgaggagcg
     3961 caagcgcctg gaggcgcagc tcctgcacat ggcccggcac gacgcgctca ccgggctgcc
     4021 gaaccgggtg ctcttccagg agcacctcgg gcaggagctc gcacggggag ggaggcgcgg
     4081 cgaggatttg gctttgctgt gcatcgacct cgacctgttc aaggaggtca acgacac
//
LOCUS       DASQWN010000538         4427 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_940808, whole genome shotgun sequence.
ACCESSION   DASQWN010000538 DASQWN010000000
VERSION     DASQWN010000538.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 4427)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4427)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4427
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_940808"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..121
                     /locus_tag="VE686_10110"
     CDS             <1..121
                     /locus_tag="VE686_10110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015821024.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HYY84836.1"
                     /translation="GGRLWFAGEALSRAQWGTVGGAWEEGERAADAIADALPR"
     gene            complement(136..609)
                     /locus_tag="VE686_10115"
     CDS             complement(136..609)
                     /locus_tag="VE686_10115"
                     /EC_number="3.1.3.-"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_function: GO:0016791 - phosphatase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidine phosphatase family protein"
                     /protein_id="HYY84837.1"
                     /translation="MAPRTIVLMRHAEKTGEPGDRGLSPAGRARAERLATWVLEAFGR
                     PDFLIAAADSPKSRRSNLTLEPLARATGLPIDDAVENADFKVLAARLLADPRYAGKFV
                     VVAWHQGKLPKLAEALGAPAGSYPDKWGRETFDRVLRLDYGEGGTPKVEEVRQPF"
     gene            736..1998
                     /locus_tag="VE686_10120"
     CDS             736..1998
                     /locus_tag="VE686_10120"
                     /EC_number="3.5.4.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012331874.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003935 - GTP cyclohydrolase II activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTP cyclohydrolase II"
                     /protein_id="HYY84838.1"
                     /translation="MNSRNRSSHIRLTSHPEPGGGVARFPIGWGAATPQERGPVIGSV
                     TNPGDRNVVGAHGGSYSLYRALAVSAGAMNPLARPDLRNTHPTAVIGPHPQWREPGKI
                     VSLDPWGHLVGEVFAGEIAGGLDVRPTIAITKARLNMPEILAAMGAHRLAADGGVLHA
                     TGDISVTKIAIDPVWHLPGVAARFSVPEGDLRRTLFEQTGGMFPELVTRPDMSVFLPP
                     IGGMTAYIMGDLEGLTDDKRRIACRVHDECNGSDVFGSDICTCRPYLVHGIEECVKEA
                     QTGGVGVIVYNRKEGRALGEVTKFLVYNARKRQEGGDQAATYFERTECVAGVQDARFQ
                     QLMPDVLHWLGIRRIDRLMSMSNMKYDAIVGSGIEVVERVPIPAALVPPDANVEIEAK
                     KAAGYYTPDGAPAPAALVGVKGRDFETY"
     gene            2017..3255
                     /locus_tag="VE686_10125"
     CDS             2017..3255
                     /locus_tag="VE686_10125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018643696.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="URC4/urg3 family protein"
                     /protein_id="HYY84839.1"
                     /translation="MPDAAETRAARSLLSAAAVRERANQLLEHALAGRLDHFAVDLGR
                     LEACADEVLATIEQNYPDLDIPFHARWRHFSAGDIDRWGAVASAVEWEDAPALARAAF
                     DLAIVSVLLDAGAGPDWRYTEGRTGETYTRSEGLAVASFELVIGGAFSSRPEDPLRAD
                     TDALASFSVTELARGFQVAADNPLVGVEGRAALINRLGQVVAAAPDVFGQADDPRPGG
                     LFDVIAATAQGGRIEAPRILEAVLVHLGPIWPGRIELGGVDLGDTWRHRLAAAEDGTD
                     GLVPFHKLSQWLSYSLIEPLEWAGYEVADIDGLTGLPEYRNGGLLLDTGVLVLKDPRD
                     AERPHEVGSALVVEWRALTVALLDRVAPLVRDRLGLSAADFPLAKVLEGGTWAAGRRL
                     AQRRRGGEPPLRVVSDGTVF"
     gene            3288..3917
                     /gene="upp"
                     /locus_tag="VE686_10130"
     CDS             3288..3917
                     /gene="upp"
                     /locus_tag="VE686_10130"
                     /EC_number="2.4.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009494571.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004845 - uracil phosphoribosyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0009116 - nucleoside metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="uracil phosphoribosyltransferase"
                     /protein_id="HYY84840.1"
                     /translation="MQGVTVVDHPLVQHKLTLMRDKTRSTKGFRQLLHEIGMLLAYEV
                     TRDLPLEAVEIETPLVPMEAPQIAGKKLVLAPILRAGVGFLDGMLMLMPSARVAHIGL
                     YRDPESLQAVEYYFKAPSDLADRTVLVLDPMLATANSAVAAVDRLKERGARDLRFVCL
                     LAAPEGIERFRGAHPDVPIWTAAIDSHLDDHGYIVPGLGDAGDRMYGTR"
     gene            3933..>4427
                     /locus_tag="VE686_10135"
     CDS             3933..>4427
                     /locus_tag="VE686_10135"
                     /inference="COORDINATES: protein motif:HMM:NF016894.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-dehydro-3-deoxygalactonokinase"
                     /protein_id="HYY84841.1"
                     /translation="MRFIVADWGTSRFRAYLVDDGAIVDRVSSDEGVSNLTSGEHAGV
                     FRRQVGPWLDAERHAPVVLVGMVGSREGWVMAPYATCPAGPEDIARAMIEVDLGDGRK
                     GHIVPGLSCEPAPGAIDVMRGEETLCLGAGVDDGLVCLPGTHPKWVALKGGRIERFAT
                     YFTGE"
BASE COUNT          614 a         1622 c         1549 g          642 t
ORIGIN      
        1 cggtgggcgc ctgtggttcg ccggcgaggc gctctcgcgc gcgcaatggg gcacggtcgg
       61 aggcgcatgg gaggaaggcg agcgcgccgc cgacgccatc gccgacgcgc tgccgcgata
      121 acgggccaac cggggtcaga acggctggcg cacctcctcg accttcggcg ttccgccctc
      181 cccatagtcc aggcgcagga cgcggtcgaa ggtctcccgc ccccacttgt cgggatacga
      241 ccccgccggg gcgccgaggg cttcggcgag cttcggcagc ttgccctggt gccacgcgac
      301 gacgacgaac ttgccggcgt agcgcgggtc ggcgaggagc cgcgccgcca ggaccttgaa
      361 gtcggcgttc tcgacggcgt cgtcgatggg gaggccggtc gcccgggcga gcggctccag
      421 cgtcaggttc gacctgcggc ttttcggcga gtcggccgcg gcgatgagga aatccggccg
      481 gccgaacgcc tccaggaccc acgtggcgag ccgctcggcg cgcgcccttc cggccggcga
      541 cagcccgcgg tcgcccggct cgccggtctt ctcggcgtgc cgcatcagca cgatggtcct
      601 cggtgccacc cctgctctcc ccaagccatt gacgcccttg ttggtttagc ccagattcgg
      661 cgtggtcgcg acgacagggc tccccaggcg cttgctttgg ggagccttca tcttttcggc
      721 acagagtttg tcgccatgaa ctcacgcaac cgctcgagcc atatccggct cacctcgcat
      781 cccgagcccg gcggaggcgt ggcgcgcttc cccatcggct ggggcgcggc gacgccgcag
      841 gagcgcgggc ccgtcatcgg gtcggtcacc aacccgggcg accgcaacgt cgtcggcgcg
      901 cacggcggct cgtactcgct ctaccgtgcc ctcgcggtct cggccggggc catgaacccg
      961 cttgcgcgcc cggacctgag gaacacccac ccgacggccg tcatcggccc ccatccgcaa
     1021 tggcgcgagc cgggcaagat cgtgtccctc gatccctggg ggcatctcgt cggcgaggtc
     1081 ttcgcggggg agatcgcggg cggcctcgac gtcaggccga ccatcgccat caccaaggcg
     1141 cggctcaaca tgcccgagat cctggccgcc atgggcgcgc accgtctcgc ggccgacggc
     1201 ggcgtgctgc acgcgacggg cgacatctcg gtcaccaaga tcgccatcga tccggtgtgg
     1261 catctgcccg gcgtggcggc gcgcttctcg gtcccggagg gcgatctgcg ccgcaccctc
     1321 ttcgagcaga ccggcggcat gttccccgag ctcgtgacgc gccccgacat gagcgtcttc
     1381 ctgccgccca tcggcggcat gacggcgtac atcatgggcg acctcgaggg cctcacggac
     1441 gacaagcgcc gcatcgcctg ccgggtgcat gacgagtgca acggctccga cgtgttcggc
     1501 tccgacatct gcacctgccg gccctacctc gtgcacggca tcgaggaatg cgtgaaggag
     1561 gcgcagacag gcggcgtcgg cgtgatcgtc tacaaccgga aggaaggccg ggcgctcggt
     1621 gaggttacga agttcctcgt ctacaacgcc cgcaagcggc aggaaggcgg ggatcaggcc
     1681 gccacctact tcgaacgcac ggagtgcgtc gccggcgtgc aggacgcgcg cttccagcag
     1741 ctcatgcccg acgtgctgca ctggctcggc atccgccgca tcgatcggct catgtcgatg
     1801 tcgaacatga agtacgacgc catcgtgggc tccggcatcg aggtggtcga gcgcgtgccg
     1861 atcccggccg ccctcgtgcc gcccgacgcc aacgtcgaga tcgaggccaa gaaggccgcc
     1921 ggctactaca cgccggacgg cgcgcccgcc cccgccgccc tcgtcggcgt caaggggcgg
     1981 gacttcgaga cctactgaga tcgggatgtg agccggatgc ctgatgccgc cgagacgcgc
     2041 gcggcgcgaa gcctcctctc cgctgcggcg gtgcgcgagc gcgccaacca gctgctcgag
     2101 cacgcgctcg cgggccgcct cgaccacttc gccgtggatc tcgggcggct cgaggcctgc
     2161 gcggacgagg tcctggcgac gatcgagcag aactatcccg acctcgacat cccgttccac
     2221 gcccgctggc gtcacttctc ggcgggcgac atcgaccgct ggggcgccgt tgcgagcgcc
     2281 gtcgagtggg aggatgcgcc ggcgcttgcc cgcgcggcct tcgacctcgc catcgtcagc
     2341 gtcctgctcg acgcgggcgc cggcccggac tggcgctata ccgaaggccg caccggcgag
     2401 acgtacacgc gctcggaagg gctcgcggtc gcgagcttcg agctcgtcat cggcggcgcc
     2461 ttctcgagcc ggcccgagga cccgctgcgg gccgacaccg acgcgctggc gagcttctcg
     2521 gtcaccgagc tcgcccgcgg cttccaggtc gcagccgaca atccgctcgt gggggtcgag
     2581 ggccgcgcgg ccctgatcaa ccgtctcggg caggtcgttg cggcggcgcc cgacgtgttc
     2641 gggcaggcgg acgacccgcg cccgggcggc ctcttcgacg tgatcgccgc caccgcgcag
     2701 ggcgggcgga tcgaggcgcc gagaatcctc gaggccgtgc tcgtccacct cggcccgatc
     2761 tggcccgggc gcatcgagct cggcggcgtc gacctcggcg acacctggcg ccaccgcctc
     2821 gcagcggcgg aggacgggac ggacggcctc gtgccgttcc acaagctgtc gcaatggctc
     2881 tcgtactcgc tcatcgagcc gctcgagtgg gcgggatacg aggtcgccga catcgacggc
     2941 ctgacgggac tccccgagta ccgcaacggc ggactgctcc tcgataccgg cgtgctcgtg
     3001 ctgaaggacc cgcgagacgc cgagcggccg cacgaggtcg gctcggcact cgtcgtcgaa
     3061 tggcgcgcgc tcacggtcgc gctcctcgac cgggtcgccc cgctcgtccg cgaccgcctc
     3121 ggcctctcgg ccgccgactt ccccctcgcc aaggtgctcg agggcggcac gtgggcggcg
     3181 ggacggcgcc tcgcgcaacg ccggcgcggc ggagagccgc cgttgcgggt cgtcagcgac
     3241 ggaacggtgt tctagggtcc cgcgggcaca ccgagggaca cacaccgatg cagggcgtca
     3301 ccgtcgtcga ccatcccctg gtccagcaca agctgacgct catgcgcgac aagacgcgct
     3361 cgacgaaggg ttttcgccag ctcctgcacg agatcggcat gctcctggcg tacgaggtca
     3421 cccgcgacct gcccctcgag gccgtggaaa tcgagactcc gctggtcccg atggaggcgc
     3481 cgcagatcgc cggcaagaag ctcgtcctcg cgccgatcct gcgcgccggc gtcggctttc
     3541 tggacggcat gctcatgctg atgccgtccg cgcgcgtcgc gcacatcggc ctctaccgcg
     3601 atccggagtc gctccaggcc gtggagtatt acttcaaggc gccttccgac ctcgccgacc
     3661 gcaccgtgct ggtcctcgat cccatgctgg cgacggcgaa ctcggccgtc gccgcggtcg
     3721 accgcctcaa ggagcgcggc gcgcgcgacc tgcgcttcgt gtgcctgctc gccgcgccgg
     3781 agggcatcga gcgcttccgc ggcgcgcacc cggacgtgcc gatctggacg gcggccatcg
     3841 acagccatct cgacgaccac ggctacatcg tgccggggct tggagacgcc ggcgaccgca
     3901 tgtacggcac gcgctagagc cggaggacag cgttgcgctt catcgtcgcc gattggggca
     3961 cctcccgctt ccgcgcctac ctggtcgatg acggcgccat cgtcgaccgc gtgtcgtcgg
     4021 acgagggcgt ctcgaatctc acctccggcg agcacgccgg cgtgttccgc cgccaggtcg
     4081 gcccgtggct cgacgccgag cgccacgcgc ccgtcgtgct cgtcggaatg gtcggcagcc
     4141 gcgagggctg ggtcatggcg ccgtatgcca cctgtccggc gggaccggag gacatcgcgc
     4201 gggcgatgat cgaggtggat ctcggcgacg gacgcaaggg gcacatcgtg ccgggcctgt
     4261 cgtgcgagcc ggcgccgggc gccatcgacg tcatgcgcgg cgaggagacg ctgtgcctcg
     4321 gcgccggcgt cgacgacggg ctcgtgtgcc tgccaggcac gcatccgaaa tgggtcgcct
     4381 tgaagggcgg ccgcatcgag cgcttcgcga cctacttcac gggcgag
//
LOCUS       DASQWN010000539         3610 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1090661, whole genome shotgun sequence.
ACCESSION   DASQWN010000539 DASQWN010000000
VERSION     DASQWN010000539.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 3610)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3610)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3610
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1090661"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1098
                     /locus_tag="VE686_10140"
     CDS             <1..1098
                     /locus_tag="VE686_10140"
                     /EC_number="6.3.4.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018044921.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004055 - argininosuccinate synthase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006526 - arginine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="argininosuccinate synthase"
                     /protein_id="HYY84842.1"
                     /translation="ELEPARRKAQLLGIKDENIFIEDLREEFVRDYVFPMFRANAQYE
                     GLYLLGTSIARPLIAKKQIEIAERVGADAVSHGATGKGNDQVRFELGYYALKPDVTVI
                     APWREWDLRSREQLIAFAEAHQIPIAKDKRGEAPFSVDANLLHASSEGKVLEDPAQEV
                     PDYVFSRTLSPEEAPDTPTVIAIDFERGDPVAIDGQKLSPATLLTRLNELGRANGIGR
                     LDLVENRFVGMKSRGMYETPGGTILLLAHRAIESITLDRGAAHLKDELMPKYAELIYN
                     GFWFAPEREMLQALIDKSQELVSGTVRLKLYKGGVHVIGRESPNSLYDQDLVTFEEGA
                     VAYDHRDAAGFIKLNALRLRTLAQRRKKLGS"
     gene            1178..2491
                     /locus_tag="VE686_10145"
     CDS             1178..2491
                     /locus_tag="VE686_10145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015927096.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TAXI family TRAP transporter solute-binding
                     subunit"
                     /protein_id="HYY84843.1"
                     /translation="MHRTLFTILAAVLALVGVGLVGWQWLGQATTYRVAVGPLTGEDT
                     RLVAAITQYLTRERASVRLKLVLTDGVAGSAEAIQDEKADLAVVRTDVAMPAKAQTLA
                     IMHRAAAVLMTTEAAAVTKLADLQDKTVGIVRNMPANERLLETALAHYEIPRAGVATV
                     FLTAPAEVEAALKSRQVDAVLVVGTQAGRTMTETIAAVTRAGGGPPVFIPVGEADAIA
                     QRFPALESVEIVRGAFGGTPPRPAEALKTIGVSHRLVGLATLDDNKVAELTRLLFAMR
                     PAISAEVPLANRIEAPDTSKSSSLPVHPGASAYYEGEVQTFFERYGDWFYLVVMVGSI
                     VGSAIAGVASSAAGRSRARDMARLNELLDIVHKARDARSAEDLDALEREADDILAAAL
                     LKAGAGHLEGSSVAAFTLGLDQARRAIAERRRVVALAPRLSQAAE"
     gene            2603..3181
                     /locus_tag="VE686_10150"
     CDS             2603..3181
                     /locus_tag="VE686_10150"
                     /inference="COORDINATES: protein motif:HMM:NF016764.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0031267 - small GTPase binding [Evidence
                     IEA];
                     GO_process: GO:0006888 - endoplasmic reticulum to Golgi
                     vesicle-mediated transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Yip1 family protein"
                     /protein_id="HYY84844.1"
                     /translation="MTVVERAKRLILTPRAEWDVVAAEPTTIGQIYASYVLPLALIPA
                     AAGFVGASLVGMGVPGLGNFRVPLALGLASAVVQLGIGLALVYVLAMIVDGLAPTFGA
                     EKNLTAAFKLVAYAYTPAWLAGIFNILPSIAFLTLLGLYSVYLLHVGLPRLMRVPPGR
                     AAPYTAVVVIAGIVLAVVVGGVLGLAFGRRMM"
     gene            3190..>3610
                     /locus_tag="VE686_10155"
     CDS             3190..>3610
                     /locus_tag="VE686_10155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012383085.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MmcB family DNA repair protein"
                     /protein_id="HYY84845.1"
                     /translation="MNLAARSLTFDVPSDGRQSPTALAVALGVRRLLASHSFASVTEL
                     TLASGRRADIVGLGGNGDVWIVEIKSCIADFRADRKWPGYRDFCDRFFFAVPTDFPQE
                     VLPEDAGLMLADGYGAAVLRGAPIHRLAGARRKAVMLR"
BASE COUNT          536 a         1281 c         1229 g          564 t
ORIGIN      
        1 gagctcgagc cggcccgtcg aaaggcgcag ctgctcggca tcaaggacga gaacatcttc
       61 atcgaggacc tgcgcgagga gttcgtgcgc gactacgtct tcccgatgtt ccgcgccaac
      121 gcgcaatacg agggcctcta cctcctcggc acctcgatcg cgcggccgct catcgccaag
      181 aagcagatcg agatcgccga gagggtcggc gccgacgcgg tctcccatgg cgccaccggc
      241 aagggcaacg accaggtccg cttcgagctc ggctattacg cactcaagcc agacgtgacc
      301 gtcatcgcgc cctggcggga gtgggacctg cgctcgcgcg agcagctcat cgcgttcgct
      361 gaagcgcacc agatcccgat cgccaaggac aagcgcggcg aggcaccgtt ctcggtcgac
      421 gcgaacctcc tgcatgcctc gtccgagggc aaggtgctcg aggatcccgc ccaggaagtc
      481 ccggactacg ttttctcgcg cacgctttcg cccgaggagg cgccggacac gccgaccgtg
      541 atcgcgatcg acttcgagcg tggcgatccc gtcgccatcg acggccaaaa gctctcgccc
      601 gcgaccctgc tgacgcgtct caacgagctc gggcgggcga acggcatcgg ccgcctcgac
      661 ctcgtcgaga accgcttcgt cggcatgaag agccgcggca tgtacgagac gccgggcggt
      721 accatccttc tcctcgccca tcgcgccatc gagtcgatca cgcttgatcg cggcgcggcg
      781 catctgaaag acgagctcat gccgaaatac gcggagctca tctacaacgg cttctggttc
      841 gcgccggaac gcgagatgct gcaggccctc atcgacaaga gccaggagct cgtcagcggc
      901 acggtgcggc tgaagctcta caaggggggc gtccacgtca tcggccgcga gagcccgaac
      961 tcgctctacg accaggacct cgttactttc gaggagggcg cggtggccta cgaccaccgc
     1021 gacgcggcgg gcttcatcaa gctaaacgcg ctcaggctgc gcaccttggc ccagcgccgg
     1081 aagaagctcg ggagttgaag cccgccacgg attcgccccg aatgacccgc acgcctgccg
     1141 ctgcgtcgcg gcgcttcgcc cgccgccgtg aggggccatg caccgaacgc tgttcaccat
     1201 cctggccgcg gtgctggcgc tcgtcggcgt cggccttgtc ggctggcaat ggctcgggca
     1261 ggcgaccacc taccgggtgg ccgtcgggcc gctgaccggc gaggacacgc gcctcgtcgc
     1321 cgcgatcacg caatatctca cgcgcgagcg cgccagcgtg cgcctcaagc tcgtcctgac
     1381 cgacggcgtg gcggggagtg ccgaggcgat tcaggacgag aaggccgatc tcgccgtggt
     1441 gcgcaccgac gtcgccatgc ccgccaaggc gcagaccctc gccatcatgc accgggctgc
     1501 ggcggtcctc atgaccacgg aggccgccgc cgtcaccaag ctcgccgacc tgcaggacaa
     1561 gaccgtcggc atcgtgcgca acatgcccgc caacgagcgg ctgctcgaga ccgccctcgc
     1621 gcactacgag attcccaggg ccggggtcgc gaccgtgttc ctcaccgcgc ccgccgaggt
     1681 ggaggcggcc ctgaagagcc ggcaggtcga cgccgtgctg gtcgtgggca cgcaggctgg
     1741 ccggaccatg acggagacca ttgcagccgt gacacgggcc gggggcgggc caccggtctt
     1801 catccccgtg ggggaggcgg acgccatcgc gcagcgcttc ccggcgctcg agtccgtcga
     1861 gatcgttcgt ggggccttcg gcgggacgcc gccgcggccg gcagaggcgc tgaagaccat
     1921 cggcgtcagc catcgcctcg tcggcctcgc gacgctcgac gacaacaagg tggccgagct
     1981 gacgaggctt ctgttcgcca tgcgcccggc gatctcggcc gaggtgccgc tggcgaaccg
     2041 catcgaggcg ccggacacct cgaagagctc gtcgctgccc gtgcatccgg gcgcctcggc
     2101 ctactacgag ggcgaggtgc agacgttctt cgagcgctac ggcgactggt tctatctcgt
     2161 cgtcatggtt ggctcgatcg tcggctccgc gatcgcaggc gtggcgagct ccgcggcggg
     2221 ccggagccgc gcgcgcgaca tggctcgcct gaacgagctc ctcgacatcg tccacaaggc
     2281 ccgagacgcg cgttcggccg aggatctcga tgctctcgag cgcgaagccg acgacatcct
     2341 cgcggcggcc ttgttgaagg cgggcgcggg ccacctcgag ggatcgagcg tcgccgcctt
     2401 cacgctcggg ctcgatcagg ctcgccgcgc catcgcggag cggcgccgcg tggtggcgct
     2461 cgcgccgcgc ctgtcgcagg cggccgagta gcgggcggcc tcttccaccg tcggggtgga
     2521 tgcgatcacg ggatttgtcc aagatagctc cagcgttcgc tgagccgatt ctcaggcgag
     2581 gatggggcgt gcggggaagg gcatgaccgt cgtcgagcgc gccaagagat taatcctcac
     2641 gccccgggcg gagtgggacg tcgtcgcggc cgagccgacg accatcggcc agatttacgc
     2701 ctcctacgtc ctcccgctgg cgctgatccc cgccgcggcg gggttcgtcg gcgcctccct
     2761 tgtcgggatg ggcgtgccgg gcctgggcaa cttccgcgtc ccgttggcgc tcggcctcgc
     2821 atccgccgtg gtccagctcg ggatcggtct cgcgctcgtc tacgtcctgg cgatgatcgt
     2881 cgacgggctc gcgcccacgt tcggggcaga gaagaacctc accgcggcgt tcaagctggt
     2941 cgcctacgcg tacacgccgg cgtggcttgc gggcatcttc aacatcctgc cctcaatcgc
     3001 cttcctgacc ctgctcgggc tctactccgt gtacctgctc catgtcgggc tgccccggct
     3061 tatgcgcgtg ccgcccggcc gcgcggcgcc gtacacggcg gtggtggtca tcgccgggat
     3121 cgtactcgcc gtggtcgtcg gaggcgtgct cgggctcgcc ttcggccgcc ggatgatgtg
     3181 aggtgagcca tgaaccttgc cgcccgttcc cttaccttcg atgtcccgag cgacgggcgg
     3241 cagtcgccga cggcgctcgc cgtcgcgctc ggggtgcggc ggctgctcgc gagccacagc
     3301 ttcgccagcg tgacggagct gacgctcgcg tcagggcgcc gcgccgacat cgtcggcctc
     3361 ggcggcaacg gcgacgtttg gatcgtggag atcaagtcgt gcatcgcgga tttccgggcc
     3421 gaccggaaat ggccgggcta ccgcgatttc tgcgaccgct tcttcttcgc cgtcccgaca
     3481 gacttcccac aagaagtcct gccggaggac gcggggctca tgctcgccga cggctatggc
     3541 gcggcggtgc tgcggggcgc gccaatccac cgcctggcgg gcgcgcgccg caaggccgtc
     3601 atgcttcgct
//
LOCUS       DASQWN010000540         2293 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1090897, whole genome shotgun sequence.
ACCESSION   DASQWN010000540 DASQWN010000000
VERSION     DASQWN010000540.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2293)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2293)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2293
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1090897"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..444
                     /locus_tag="VE686_10160"
     CDS             <1..444
                     /locus_tag="VE686_10160"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY84846.1"
                     /translation="ELAIRANAADRAARMERMRSGERPTPPTDLMERLDRRAERLSER
                     AQRMTALQSALKPLWASFDERQKRLFPILMRAGAGGRHTVWAGGWRGGPDHMGPGRME
                     RMRERMGRDSMGREGMRRHRMDRDRMGPGERRSDRGRDGAPEPEL"
     gene            complement(523..1140)
                     /gene="rpsD"
                     /locus_tag="VE686_10165"
     CDS             complement(523..1140)
                     /gene="rpsD"
                     /locus_tag="VE686_10165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011580609.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0015935 - small ribosomal subunit
                     [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_function: GO:0019843 - rRNA binding [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S4"
                     /protein_id="HYY84847.1"
                     /translation="MSKRVEAKHKLDRRMGQNIWGRPKSPVNRREYGPGQHGQRRKGK
                     MSDFGTQLRAKQKLKGYYANITEKQFRRYYAEAIRMKGDSGENLVGLLERRLDAVVYR
                     AKFVPTPFAARQFVNHGHVKVNGRRVNIPSYLVKPGDVVEVKEKSKTMERVVVAAQLA
                     ERDVPDYVETDHSKMTARLTRIPTLSEVPYAVQMEPNLVIEFYSR"
     gene            complement(1333..2202)
                     /gene="murI"
                     /locus_tag="VE686_10170"
     CDS             complement(1333..2202)
                     /gene="murI"
                     /locus_tag="VE686_10170"
                     /EC_number="5.1.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017486459.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008881 - glutamate racemase activity
                     [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate racemase"
                     /protein_id="HYY84848.1"
                     /translation="MHVDLLAGTVYPPAIMLRRTPTILVFDSGLGGLTVFSEIVRARP
                     DARFIYAADDAGFPYGRLSEAALVARVEAVVARLIALHAPDLVVVACNTASTVVLHAL
                     RQRFAVPFVGTVPAIKPAAALSRSKRISVLATPGTVAREYTRDLVSTYAAGCRVTLVG
                     APRLAGLAEAELSGSPVGDADIAAEIAPCFVTDDGARTDVIALGCTHYPLLLPRLRAL
                     APWPVTWVDPAPAIARRVVQLVGNAACDHVHEDEATAVFTGGAGVTSALRDALSARGL
                     ARIDIEPVPFAAV"
BASE COUNT          366 a          762 c          846 g          319 t
ORIGIN      
        1 gagctcgcca tccgcgccaa cgcggccgat cgggccgcgc gcatggagcg catgcgctcc
       61 ggcgagcgcc cgacgccgcc gaccgacctc atggagcggc tcgaccgccg ggccgagcgc
      121 ctgagcgagc gggctcagcg catgaccgcg ctgcaatcag cgctgaagcc gctgtgggcg
      181 agcttcgacg agcgccagaa gcgcctgttc ccgatcctca tgcgcgccgg cgccggcggg
      241 cggcacacgg tctgggcggg cggctggcgc ggcggcccgg atcacatggg tccgggccgg
      301 atggagcgca tgcgcgagcg catgggacga gacagcatgg ggcgagaggg tatgcgaagg
      361 caccgcatgg accgcgaccg catgggcccc ggcgagcgtc gcagcgatcg ggggcgggac
      421 ggcgcgcccg agcccgagct ctgaggcagc cgccccggcg ccctgcggga acgaaaaagg
      481 ccgccccgag gggcggcctt ttgctgtgcc gtgcgtctcg cgtcagcgcg agtagaactc
      541 gatcacgaga ttgggctcca tctgcaccgc gtacggcacc tcggagaggg tcgggatgcg
      601 cgtgaggcgg gccgtcatct tggagtggtc ggtctcgacg tagtcgggca cgtcgcgctc
      661 ggcgagctgc gcggccacga ccacccgctc catcgtcttc gacttttcct tcacctcgac
      721 gacgtcaccc ggctttacga ggtagctcgg gatgttcacg cggcggccgt tgaccttcac
      781 gtggccgtgg ttgacgaact ggcgcgccgc aaacggtgtc ggcacgaact tcgcgcggta
      841 cacgacggcg tcgaggcgcc gctccagcag gccgacgagg ttctcgcccg agtcgccctt
      901 catgcggatg gcttccgcat agtagcgccg gaactgcttc tcggtgatgt tggcgtagta
      961 gcccttgagc ttctgcttgg cgcgcagctg cgtgccgaag tcgctcatct tgcccttgcg
     1021 gcgctggccg tgctggccgg ggccgtactc gcggcggttc acgggactct tcgggcggcc
     1081 ccagatgttc tggcccatgc ggcgatcgag cttgtgcttc gcctcaacgc gcttcgacat
     1141 tcgcgattcc tcttgcgatg ttgttcgagt tttcgaggaa cgcgccctcc tcttcccttc
     1201 cgggacgaca gcccttggac cgaagaaggt ccggagcacg ggagcgtaaa acgtaagcgc
     1261 ggcccgtcag gaccgcgcga acgaccggga tttagaggcg caggcccgga aagtcaaccg
     1321 gaacgggcga ggtcagacgg ccgcgaacgg caccggctcg atgtcgatgc gcgcgaggcc
     1381 ccgagccgag agagcatccc ggagagccga cgtcacgccc gcgccgccgg taaacaccgc
     1441 ggtcgcttcg tcctcgtgga cgtggtcgca ggccgcattg ccgacgagct ggacgacgcg
     1501 gcgggcaatg gcgggcgcgg gatcgaccca ggtgaccggc cagggcgcga gggcgcgcag
     1561 gcggggtagc agcagcggat agtgcgtgca gcccagcgcg atgacatcgg tgcgggcgcc
     1621 gtcgtcggta acgaagcagg gggcgatctc ggccgcgata tccgcgtcgc ccaccgggct
     1681 gcccgacagc tccgcctcgg ccaatccggc aagacgcggc gcaccaacga gggtcacccg
     1741 gcagccagcg gcgtaggtgg acacaaggtc gcgcgtgtac tcgcgggcga cggtccccgg
     1801 cgtggcgagg acgctgatac gcttcgagcg cgacagcgcg gccgccggct tgatggccgg
     1861 aacggtgccc acgaagggca cggcgaagcg ctggcgcagg gcgtgcagca ccaccgtcga
     1921 cgccgtgttg caggcgacga cgacgaggtc tggcgcatgc agggcgatca gccgcgcgac
     1981 aacggcttcg acgcgcgcca ccagggctgc ctcgctcagg cgtccgtacg gaaacccggc
     2041 gtcgtcggca gcgtagatga agcgggcgtc ggggcgggcg cgcacgatct cggaaaacac
     2101 cgtgagcccg cccaggccgg aatcgaagac gaggatggtc ggcgtgcggc gcagcatgat
     2161 cgcgggcggg tacacggttc cggcaaggag gtcgacgtgc attggggaac gggcccgctc
     2221 ggcaagagcc cccatcacgc tcccggcggg gttaacgcga ggtcaccgga ttaggtaaac
     2281 atctcacccc tgc
//
LOCUS       DASQWN010000541         2064 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_1290019, whole genome shotgun sequence.
ACCESSION   DASQWN010000541 DASQWN010000000
VERSION     DASQWN010000541.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2064)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2064)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2064
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1290019"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..552
                     /locus_tag="VE686_10175"
     CDS             <1..552
                     /locus_tag="VE686_10175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015928409.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inositol monophosphatase family protein"
                     /protein_id="HYY84849.1"
                     /translation="YVWVLDPIDGTRAFMAGLPVWGTLIGLTRLGTPAYGLMHQPFTG
                     ERFWGDGGKAVFRRAGDPGGERRLKTRRCSSLADAIVSTTSPRLFTGEALRAYDRVES
                     AAKLARYGTDCYAYCMLAAGHIDVVIESGLKPHDIVALIPIVEGAGGVVTTWDGGPAA
                     RGGSIVAVGDRRLHEAVLALLRG"
     gene            complement(490..1458)
                     /locus_tag="VE686_10180"
     CDS             complement(490..1458)
                     /locus_tag="VE686_10180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009763374.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HYY84850.1"
                     /translation="MRVLTSDGVPLRVVRWRPTTRRVRGTVCLLQGRAEFIEKYFEVV
                     RELRRRGFAVVAFDWRGQGLSGRQVGNPRKGHVRDFSHYFRDLEALREQVLEPLMPQP
                     HFALAHSMGGAIALSAASEGRLPFARLVTTGPMLALSLIRKPTSAKVAALVLNALGFG
                     RSFVPGGGETSIAEKPFPGNPLTSDPVRYARNGEAAAAVGDGAIGDPTVAWVAAAFRV
                     MNKLTRAATPLSIRLPTLVVAAGADAVCATPVIERFAARLKGGHAIVIPGARHEILME
                     RDPIRDDFWAAFDAFVPGTPDPSFGPSAAQEGEDGLMEPAVADGDD"
     gene            1667..>2064
                     /locus_tag="VE686_10185"
     CDS             1667..>2064
                     /locus_tag="VE686_10185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017483557.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Hsp20 family protein"
                     /protein_id="HYY84851.1"
                     /translation="MRQFDLAPLYRNTVGFDRLFSMLDQLVSVDSAPTYPPYNIERTG
                     ENAYRISVAVAGFTDQDLQIEVKENALTVRGERKPTEERKADVLYQGIAARTFERRFQ
                     LADGVQVTGANLENGLLHVDLVREIPEAKKP"
BASE COUNT          329 a          724 c          722 g          289 t
ORIGIN      
        1 tacgtctggg tcctcgatcc catcgacggc acgcgggcct tcatggccgg gctgccggtg
       61 tggggaacgc tcatcgggct cacccgcctc ggcacgcccg cctacgggct catgcatcaa
      121 ccgttcacag gcgagcgctt ctggggcgac ggcggcaagg cggtgttccg gcgggccggc
      181 gacccgggcg gcgagcgccg gctcaagacg cgccgctgca gctcgctcgc ggacgccatc
      241 gtgtcgacca cgagcccgcg cctgttcacc ggcgaggcgc tgcgggccta cgaccgcgtc
      301 gaaagcgccg ccaagctcgc ccgctacggc accgattgct acgcctactg catgctggcc
      361 gcgggccaca tcgacgtcgt catcgaatcg gggctgaagc ctcacgacat cgtcgcgctg
      421 atcccgatcg tcgaaggggc cggtggggtc gtcaccacct gggacggcgg cccggcggcg
      481 aggggcggct caatcgtcgc cgtcggcgac cgccggctcc atgaggccgt cctcgccctc
      541 ctgcgcggct gaggggccga agctggggtc cggggtcccc gggacgaagg cgtcgaaggc
      601 ggcccagaaa tcgtcccgga tggggtcgcg ttccatcagg atctcgtgcc gggcgcctgg
      661 gatcacgatg gcatggccgc ccttgaggcg ggcggcgaag cgctcgatca ccggcgttgc
      721 gcagaccgcg tcggcgccag cggcgaccac gagggtcggc agccggatcg acaggggcgt
      781 cgccgcgcgg gtcagcttgt tcatgacgcg gaacgccgcg gccacccagg cgaccgtcgg
      841 atcgccgatg gcgccgtcgc ccacggccgc cgccgcctcg ccgttgcggg cgtagcgcac
      901 aggatcgctc gtcagcggat tgcctgggaa gggcttctcg gcgatcgagg tctcgccgcc
      961 tcccgggacg aagctgcgcc cgaacccgag cgcgttgagg accagcgccg cgaccttggc
     1021 gctcgtgggc ttgcggatga gcgacagggc cagcatcggc cccgtggtca cgagccgcgc
     1081 aaacggaagg cgtccttcgg aagcggcaga cagcgcgatc gccccgccca tggagtgggc
     1141 aagcgcgaag tgcggctgcg gcataagcgg ttcgagcacc tgctcgcgga gggcttcgag
     1201 atcgcggaag tagtgcgaga aatcgcgcac gtggcccttg cggggattgc cgacctggcg
     1261 ccccgagagg ccctgcccgc gccagtcaaa ggcgacgacc gcgaagcctc gccggcgcag
     1321 ctcacgcacg acctcgaagt acttctcgat gaactcggcc cggccctgca gcaggcacac
     1381 cgtgccgcgc acccggcgcg tcgtcgggcg ccagcggacg actcgcaacg gcacgccgtc
     1441 cgaggtgagg acgcgcatga cgaccccttg gcggggagcc ggattgctgg gggtttcgtg
     1501 cagttgcaac ggctggccgc gctcgaatgg gcgctcttca aagcacggcg ggcttgaaag
     1561 cgaaagcctg caaaaccacc tctcatctgt gccggccaga cggcggcacg aacccggtcc
     1621 ggccctcagg gcggacccct gcatgtcgct tcaaggagga tatgccatgc gacagttcga
     1681 tcttgctccc ctgtaccgca acacggtcgg cttcgaccgg ctgttctcga tgctcgacca
     1741 gctcgtcagc gtcgattccg cacccaccta cccgccctac aacatcgagc gcaccggcga
     1801 gaacgcgtac cgcatttcgg tcgcggtcgc cggcttcacc gatcaggatc tccagatcga
     1861 ggtgaaggag aacgcgctca ccgtccgcgg cgagcgcaag ccgaccgagg agcgcaaggc
     1921 cgacgtgctc taccagggca tcgcggcgcg cacgttcgag cggcgcttcc agctcgcgga
     1981 cggcgtccag gtgacgggag ctaatctcga gaacggcctt ctgcacgtcg atctcgtgcg
     2041 cgagattccg gaagccaaga agcc
//
LOCUS       DASQWN010000542         5682 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_842059, whole genome shotgun sequence.
ACCESSION   DASQWN010000542 DASQWN010000000
VERSION     DASQWN010000542.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 5682)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5682)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5682
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_842059"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..671)
                     /locus_tag="VE686_10190"
     CDS             complement(<1..671)
                     /locus_tag="VE686_10190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012317915.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transglycosylase domain-containing protein"
                     /protein_id="HYY84852.1"
                     /translation="MSDEQSPPRPSPLRVGRWRRRVALSGLLSALLLAVGAGALWAYV
                     AGLGPLDLSAAERRSTVVLDREERLLRPFASEDGRWRLPIATGDVDPRYLAMLEAYED
                     AHFRKHHGVDLLALGRALGQLATHGRVISGGSTLTMQVARLLEPREERSLTAKLRQVV
                     RAVQLEQRLSKAEILTLYLSLAPYGGNLEGARAAALSYFGREPKRLSFAEAALLVALP
                     QSPEAR"
     gene            complement(668..>5682)
                     /locus_tag="VE686_10195"
     CDS             complement(668..>5682)
                     /locus_tag="VE686_10195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018046047.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004866 - endopeptidase inhibitor activity
                     [Evidence IEA];
                     GO_process: GO:0010951 - negative regulation of
                     endopeptidase activity [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="alpha-2-macroglobulin"
                     /protein_id="HYY84853.1"
                     /translation="DARRSLAGFAAAIAADPKDTKSWLGFSKAASAVGPRDYTERYKL
                     QERATAAAYAAYQRATTRADEAAALAVLAQTYAGRSVWRPALDSYRTSLQLVDDPQIR
                     STYEDMREKHGFRITDYKIDSDSASPRVCFNFSDPLAAGKVDFTPYVAVSGAANAAVT
                     AENAQLCVEGLKHGERYSMVLRQGLPSQVGENLLKSADYEIYVRDRSPQVRFTGRNYV
                     LPRTGQEGIPVVTVNTGQVAIEVARIGDRNLLPTVRSDEFLGQLRRYKADKIPTETGA
                     SIWKGTLETRSELNRDVVTAFPVLEAVGKLEPGVYVMMAQPANATKDPDDDWGPRATQ
                     WFVVSDLGLTALKGDGGVDVFVRSLASAEPVANVEIRLVARNNEVLATKSTDSRGHVA
                     FDPGLARGEGGLAPGLVVASAGADYGFLDLGLAAFDLTDRGVKGPAAPHAVDAHVFTE
                     RGVYRSGETVFVTALLRDSKGVAVPSVPLTLVAKRPDGVEYKRAVVEDQGLGGRSFSL
                     PILAGAARGTWRIAAYTDPKGAPVGEATFLVEDYVPERLEITLTPKAPVLRRGQPAEI
                     DVSARYLYGAPGSNLEVSGEVVVQAATKAGVPGLDGFTVGLEDEAVEASTVEIENKVT
                     TDAQGRATVLAPIQDVAAARLTEARITLRVGEPGGRAVERSLTVPIAPSGPVVGVRKA
                     FTELSEGAMATFDVVVASPDGARVARPGVTWTLYKVERRYQWFNSDGRWGFEPVKSSK
                     RIADGRVDAAADAAARIATPVEWGSYRLDVSAPGLAGAQTSVSFRVGWSGDQTADVPD
                     LLDMTLDKAAYTAGDTLTARLNPRFKGKATLAVVSDKVHHIQVIDVAPEGATVTLPVK
                     AEWGAGAYVVALAHRPLDEAAKRMPGRALGVAWFSVDRAGRSLSVELNAPAQVRPRGD
                     LTLPIKLAGLKAGEEARITVAAVDVGILNLTRYEAPNPAEHFFGQKQLGTEVRDLYGY
                     LIDGMQGTRGAIRSGGDGSGKGLEGIPPTQEPLARYSGVVTVGADGSAEVSFEIPAFN
                     GTARVMAVAWTKDRVGSASADVIIRDPVVLAGTLPRFLSVGDQSRFFMQLDNVEAPAG
                     DYTVDLDIHGPVVVAADALRRTVRLDKGAKGSVVIPVTAAGPGLAQLDVTLSGPGISA
                     TQRFAVRIQPGTSALVRRTVRPLEAGASLTVSGDLVADILPGTGAVSVSVSPLAALDV
                     PGLLQALDRYPYGCSEQIVSRALPLLYVNKLATNEHMALDDKLDERVRAAIEKVLARQ
                     GSNGAFGLWSVGGDDTWLDAYVTDFLTRARERGFAVPQQAFNQALDRLRNFVANTTDV
                     ESNGEDLAYAAYVLARNGRPVMGDLRYLVDTKMDDFDTPLSRAQLAAALALLGDRGRA
                     QTAFKSAVELLQEDEDDGVSRPDYGTRLRDGAGMMALASEAGFTRDLVQPIAKVITDE
                     RKPGRTTSTQENAWMILAAQAVGQDAAAITLSVAGEPHRGALYRTWRDGSLAQPVTIA
                     NGGTAPPQVVLSVTGNPIGPEPEASHGFTIERSYYRLDGTKVDPAQVRQNDRFVTVLK
                     VTEPEAKYGRVLLVDRLPAGFEIDNPKLVDSGSVGALSWLKPEVQPTNAEYRDDRFVA
                     AFDRGTDQSAFFTVAYVVRAVAPGRYVHPPASVEDMYRPDRFGRTDFGTVEVTATARR
                     PP"
BASE COUNT          802 a         1953 c         2093 g          834 t
ORIGIN      
        1 cgcgcctccg gcgactgcgg caacgcgacg agcaaagcgg cctccgcgaa cgacaggcgc
       61 ttcggctccc gtccgaagta cgacagcgcc gccgcgcgcg cgccctcgag gttgccgccg
      121 tagggcgcaa ggctgagata cagggtgaga atctcggcct tcgagaggcg ttgctcgagt
      181 tgcacggcgc gcacgacctg ccgcagcttg gcggtgaggc tacgctcctc gcgcggctcc
      241 agcaggcgcg ccacctgcat cgttagcgtc gacccgcccg agatcacccg gccgtgcgtt
      301 gcgagttggc cgagcgcccg gccaagcgcc aggagatcga cgccgtggtg cttgcggaag
      361 tgcgcgtcct catacgcctc gagcatggcg agatagcgcg ggtcgacgtc accggtcgct
      421 atcggcaggc gccaacggcc gtcctcgctg gcgaatggcc tcagcaatcg ttcctcgcgg
      481 tcgagaacga cggtcgagcg ccgctcggcg gccgatagat cgagtggccc gagacccgct
      541 acgtaggccc agagtgcgcc cgcgccgacg gccagcagga gcgccgacaa aagcccgcta
      601 agggcgacgc ggcgacgcca cctccctacc cgcaagggcg agggacgagg cgggctctgc
      661 tcgtcgctca tggtggcctc cgcgccgttg ccgtgacctc gacggtgccg aagtccgtgc
      721 ggccgaagcg gtcggggcgg tacatgtcct cgacgcttgc gggcgggtgc acgtagcggc
      781 ccggggccac tgcgcgcaca acataagcga ctgtgaagaa cgcagactgg tccgtgccgc
      841 gatcgaaggc ggcgacgaag cggtcgtcgc ggtactcggc gttggtgggc tggacctcgg
      901 gtttcagcca gctgagcgcc ccaacggaac ccgagtcgac gagcttcggg ttgtcgatct
      961 cgaagccagc gggcaggcgg tcgacgagga gcacgcggcc gtacttggcc tccggctccg
     1021 tgactttcag caccgtcaca aagcggtcgt tctggcgcac ctgggcgggg tccaccttgg
     1081 tgccgtcaag gcggtagtag ctgcgctcga tcgtgaaccc gtgcgacgcc tcgggctccg
     1141 gcccgatcgg gttgccggtg acgctcaaca cgacctgcgg cggcgccgtg ccgccgttcg
     1201 cgatggtcac cggctgggcg aggctgccgt ctcgccaggt ccggtacaaa gcgccgcggt
     1261 gcggctcgcc ggcaaccgac agggtgatgg ccgccgcgtc ctgcccgacc gcttgcgcgg
     1321 cgaggatcat ccaggcgttc tcctgcgtgc tcgtggtccg tccgggcttg cgctcgtccg
     1381 tgatcacctt ggcgatcggt tgcacgaggt cgcgcgtgaa acccgcctcg gaggcgagcg
     1441 ccatcatgcc ggcgccgtca cgcaggcgag tgccgtaatc gggccgcgat accccgtcgt
     1501 cctcgtcctc ctgcaggagt tcgacggcgg acttgaacgc cgtctgcgcc cgcccacggt
     1561 cgccgagcag ggcgagggcg gccgcgagct gcgcccgtga gagcggcgtg tcgaagtcgt
     1621 ccatcttggt gtcgacgagg tagcgcaggt cgcccatcac cggccgcccg ttgcgagcga
     1681 gcacataggc cgcgtaggcg agatcctcgc cgttactctc cacgtccgtg gtgttggcga
     1741 cgaagttgcg caggcggtcg agggcctggt tgaacgcctg ctgcggcact gcgaacccgc
     1801 gctcgcgcgc ccgtgtcagg aagtccgtga cataggcgtc gagccatgtg tcgtcgccgc
     1861 cgacggacca caggccgaag gcgccgttcg agccctggcg cgcgagcact ttctcgatcg
     1921 cggcccggac gcgctcgtcc agcttgtcgt cgagcgccat gtgctcgttg gtggcgagct
     1981 tgttgacgta gagcagcggc agcgcgcggc tgacgatttg ctccgagcag ccgtacggat
     2041 agcggtcgag cgcctgcagt aggccaggga cgtcgagcgc cgctagcggc gacaccgaca
     2101 ccgagaccgc gccggtgcct gggaggatgt cggcgactag gtcgcccgag acggtgaggc
     2161 tcgcccctgc ctcgaggggg cgcaccgtgc ggcgcaccag cgccgaggtg cctggctgga
     2221 tgcgcaccgc gaagcgctgc gttgcggaga tccctgggcc cgacaaggtg acgtcgagtt
     2281 gcgcgaggcc cgggccagcc gcggtgacgg ggatgacgac ggagcccttg gcgcccttgt
     2341 cgaggcgcac ggtccggcgc agggcgtcgg cggcgaccac gacaggcccg tggatgtcga
     2401 ggtcgaccgt gtagtcgccg gccggggcct cgacgttgtc gagctgcatg aagaagcgcg
     2461 actggtcgcc gaccgagagg aagcgcggca gggtgccggc gagcaccacc ggatcgcgga
     2521 tgatcacgtc ggcgctggcg ctgccgaccc ggtccttcgt ccaggcgacc gccatgacgc
     2581 gggcggtgcc gttgaaggcc gggatctcga agctgacctc ggcgctgccg tcggccccga
     2641 ccgtgaccac gcccgaatag cgcgcgaggg gctcctgcgt cggcgggatg ccctcgaggc
     2701 ccttgccgct gccgtcgccg ccggagcgga tggcgccgcg ggtgccttgc atgccgtcga
     2761 tgaggtagcc gtagaggtcg cgcacctcgg tgccgagctg cttctggccg aagaagtgct
     2821 cggccgggtt cggcgcctca tagcgcgtca gattgaggat gccgacgtcg accgccgcga
     2881 cggtgatgcg cgcctcctcg cctgccttca ggcccgcgag cttgatgggc agcgtgagat
     2941 cgccgcgcgg acgcacctgc gccggagcgt tgagctcgac cgagagcgag cgccccgcgc
     3001 ggtcgaccga gaaccacgca accccgagcg cgcggcccgg catgcgcttg gcggcctcat
     3061 cgagcggccg gtgggcgagg gcgacgacgt aggcccccgc gccccattcg gccttgacgg
     3121 gcagcgtcac ggtggcgccc tcgggggcga cgtcgatcac ctggatatgg tgcaccttgt
     3181 cgctgaccac cgcgagcgtc gccttgccct tgaagcgcgg gttgaggcgc gccgtaaggg
     3241 tgtcgccggc cgtgtaggcc gccttgtcga gggtcatgtc gaggaggtcg ggcacgtccg
     3301 ccgtctggtc gcccgaccag ccgacgcgga acgatacgct cgtctgcgcg ccggcgaggc
     3361 cgggcgcgct cacgtcgagg cggtaggagc cccattcgac cggggtcgcg atgcgagctg
     3421 cggcgtcggc cgccgcgtcc acgcgcccat ccgcaatgcg cttcgacgac ttgacgggct
     3481 cgaagcccca gcgcccgtcg gaattgaacc actggtaccg gcgctcgacc ttgtacaggg
     3541 tccaggtgac gcccggccgg gcgacgcgcg cgccgtctgg agaggcgacg accacatcga
     3601 aggtcgccat ggcgccctcc gagagctcgg tgaacgcctt gcgcacgccg acgaccggcc
     3661 cgctcggcgc gatcggcacc gtcaggctgc gctcgacggc gcggccaccc ggttcgccga
     3721 cgcgcagcgt gatgcgcgcc tccgtgagcc gggcggcggc gacgtcctgg atcggcgcga
     3781 gcaccgtcgc gcgcccctgc gcatcggtcg tgaccttgtt ctcgatctcg accgtcgagg
     3841 cctcgacggc ctcgtcctcg aggccgaccg tgaacccatc aaggcccggg acgccggcct
     3901 ttgtcgcggc ctgcaccacc acctcgccgg agacttcgag gttcgagccc ggcgcgccgt
     3961 agaggtagcg ggccgacacg tcgatctcgg ccggctgccc gcgccggagg acgggcgcct
     4021 tgggggtgag ggtgatctcg agccgctcag ggacgtagtc ctcgacgagg aaggtggctt
     4081 cgcccacggg cgcgcccttc gggtcggtgt aggctgcgat ccgccaggtg ccccgggcgg
     4141 cgccggccag gatcggcagg gagaacgagc gcccgccgag gccctggtcc tcgaccacgg
     4201 cgcgcttgta ctcgactccg tccgggcgct tggcgacgag ggtcagcggc acgcttggga
     4261 ccgcgacgcc cttggagtcg cgcaacagcg ccgtcacgaa caccgtctcg ccggagcggt
     4321 agacgccgcg ctccgtgaac acatgcgcgt cgacggcatg cggggcggcc ggacccttca
     4381 cgccgcggtc ggtgaggtcg aaggctgcaa ggccgaggtc gaggaagccg tagtcggcgc
     4441 cggcgctcgc gacgacgagc ccgggggcaa gcccgccctc gccgcgcgcg agccccgggt
     4501 cgaacgccac gtgaccccgg gagtcggtgc tcttggtcgc gaggacctcg ttgttgcgcg
     4561 cgacaagccg aatctcgacg ttcgcaaccg gttcggcgct cgccagcgag cgcacgaaga
     4621 cgtcgacgcc gccgtcgccc ttcagcgccg tcaggccgag gtcggagacg acgaaccact
     4681 gcgtcgcgcg cggaccccaa tcgtcgtcgg ggtccttcgt ggcgttcgcg ggctgcgcca
     4741 tcatgacgta gacgccgggt tcgagcttgc cgacggcctc gagcaccgga aacgccgtga
     4801 ccacgtcgcg gttgagctcg gaccgggtct cgagggtgcc cttccagatg ctcgcgcccg
     4861 tctcggtcgg gatcttgtcg gccttgtagc gccgcagctg gcccaggaac tcgtccgacc
     4921 gcacggtcgg caggaggttg cggtcgccga tgcgcgcgac ctcgatggcg acctggccgg
     4981 tgttgacggt gacgaccggg atgccttcct ggcccgtgcg cggcagcacg tagttgcgcc
     5041 cagtgaagcg cacctgaggg gagcggtcgc ggacgtagat ctcgtagtcg gccgatttca
     5101 gcaggttctc gccgacctgc gacggcagcc cctggcgcag caccatggaa tagcgctcgc
     5161 cgtgcttgag gccttcgaca cagagctgcg cgttctcggc cgtcacggcg gcgttcgccg
     5221 cgcccgagac ggcgacgtaa ggggtgaagt ccaccttgcc ggcggcgagc gggtcggaga
     5281 agttgaagca gacgcgcggt gaggcggaat cggagtcgat cttgtagtcg gtgatgcgga
     5341 agccgtgctt ctcgcgcatg tcctcgtagg tgctgcggat ctgcggatcg tccacgagct
     5401 ggaggctcgt acggtaggaa tcgagggcgg ggcgccacac cgaccggccg gcgtacgtct
     5461 gggcgagcac cgccagcgcg gcggcctcgt cggcgcgcgt cgtggcgcgc tggtaggcgg
     5521 cgtaagccgc cgccgtcgcg cgctcctgca gcttgtagcg ctcggtgtag tcgcgcggcc
     5581 cgacggcgct cgcggctttc gagaagccga gccagctctt cgtgtccttc ggatcggccg
     5641 caatggcggc cgcgaacccg gcgagcgaac ggcgcgcatc gc
//
LOCUS       DASQWN010000543         2394 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_346304, whole genome shotgun sequence.
ACCESSION   DASQWN010000543 DASQWN010000000
VERSION     DASQWN010000543.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2394)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2394)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2394
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_346304"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            486..1781
                     /locus_tag="VE686_10200"
     CDS             486..1781
                     /locus_tag="VE686_10200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006931974.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HYY84854.1"
                     /translation="MDRRSFLKSTAAAAVGTAFAAPAIAQGAPVEVSFFYPIAVGGPI
                     TKIIDGYVAEFEKANPDVKVRPIYAGTYQETIAKAITAHKSGTPPVLGVLLSTDMFTL
                     IDEEAVVPFDPFLRSYDDKKWAQSFFPAFMLNSQTGGKTWGIPFQRSTIVLYWNKELF
                     KEAGLDPEKPPTTWQEQADFAAKLTKRDGSGNVSQWGVQIPSSGFPYWLFQGLTTQAG
                     AILMNPEGDRTFYDKPEVTEALQYWVDLSQKHKVHPPGIVEWGTTPKDFFERKVAMMW
                     TTTGNLTNVRSNAKFPFGVAMLPAGKQPGSPTGGGNFYVFKKSTPEQQQAAVRFAKFL
                     TTPERAAQWSIDTGYVAVRPEAYDTPAMKTYVDGFPPAAVARDQLKFAVAELSTHENQ
                     RVTKALNDGLQAALTGTKPPAQAMKDAQAEAERILKPYR"
     gene            2148..>2394
                     /locus_tag="VE686_10205"
     CDS             2148..>2394
                     /locus_tag="VE686_10205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019404718.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter permease"
                     /protein_id="HYY84855.1"
                     /translation="MSARATATVHGWLLLLPAMALLVAFTHWPAVATFIDSFYSTPRP
                     RRPERFVGLDNYRQIVDDPVFWQSLVNNLWYALRTIPV"
BASE COUNT          392 a          830 c          813 g          359 t
ORIGIN      
        1 ccccgctatc cttgtcccag gtccagacct tcggcggggt gtagtcggag ggggtggtca
       61 tcggtgaggc tccgggcgtg tacggcgccg gcgatcgtgg tgggcgtgcg ccgccggcgc
      121 atatacgctc tttgcgacgg cgtgcgaacg gcaggagcgg cggggccgac ccgcgcactg
      181 acgtccctcc cccatgctcg tcagcgcatg acggagggat cgagtcgggc gaagctcggc
      241 cgagagtggg ggcgagtcgc cgaggcgcag ctattcgaca tcggcagatc tggcgcctga
      301 ccctccccca ccccgctccg gcctcgcggc ccgagtggac cctcccttca cccgctgacg
      361 cggccttgac gcggcaccgc cgcccggcac actcccttgc atcgcaacaa acggagcgcg
      421 gccgcgtcgc ctgagtgtca tcgggctgcg ataacgaggc cgcgaccatg gggaggagag
      481 ctgagatgga caggcgcagt ttcttgaaga gcacggcggc ggcggccgtc ggaacggcgt
      541 tcgcggcgcc tgcgatcgcg cagggggcgc ccgtcgaggt gtcgttcttc tatcccatcg
      601 cggtcggcgg accgatcacc aagatcatcg acggctacgt cgccgagttc gagaaggcga
      661 acccggacgt gaaggtgcgg ccgatctatg ccggcacgta ccaggagacc atcgccaagg
      721 cgatcacggc gcacaagagc ggcacgccgc cggtcctcgg cgtgctcctc tcgaccgaca
      781 tgttcaccct catcgacgag gaagccgtcg tgcccttcga cccgttcctg cgctcgtacg
      841 acgacaagaa gtgggcccag agcttcttcc cggccttcat gctgaacagt cagacgggcg
      901 gaaagacctg gggcattccg ttccagcgct cgacgatcgt gctgtactgg aacaaggagt
      961 tgttcaagga ggccggcctc gacccggaga agccgccgac gacctggcag gagcaggccg
     1021 acttcgccgc caagctgacg aagcgcgacg gctccgggaa cgtgagccag tggggcgtgc
     1081 agatcccctc ctcggggttt ccgtactggc tcttccaggg cctcacgacg caagccggcg
     1141 cgatcctcat gaacccggaa ggcgaccgca ccttctacga caagccggag gtcaccgagg
     1201 cgctgcagta ctgggtggac ctgtcgcaga agcacaaggt gcacccgccc ggcatcgtcg
     1261 aatggggcac cacgccgaag gacttcttcg agcgcaaggt cgccatgatg tggacgacca
     1321 ccggcaacct caccaacgtg cgctcgaacg ccaaattccc cttcggcgtc gccatgctgc
     1381 cggccggcaa gcagcccggc agcccgacgg gcggcggcaa tttctacgtc ttcaagaagt
     1441 cgacgcccga gcagcagcag gcggccgttc gcttcgcgaa gttcctgacg acgcccgagc
     1501 gcgcggcgca gtggagcatc gacacgggct acgtggcggt gcggccggag gcctacgaca
     1561 cgccggccat gaagacctac gtcgacggct tcccgcccgc agcggtggcc cgcgaccagc
     1621 tcaagttcgc cgtggcggaa ctctcgacgc acgagaacca gcgcgtgacc aaggccctta
     1681 acgacggcct ccaggcggcg ctcacgggca ccaagccgcc cgcgcaggcc atgaaggacg
     1741 cgcaagcgga agccgagcgc atcttgaagc cgtaccggtg agggtcaagc ttatccctcc
     1801 ccgcgagggg agggcggaga cgggcgcgtc agcgcccgcc cgggtggggc ggacacctcc
     1861 gtgcttgacc gatggacacc gtggttccgc cccaccccgg tcgcgcctgc aggcgcgact
     1921 cggccctccc ctcgcgggga gggatggagc gccggcgcga cgcgggcgcg cgaggaagat
     1981 cgtcgtcatc ttcccgggtc cggctgaggc gtgccgaggg gagacatctc ggcatcttcc
     2041 cggattggtc gccggatgcc ggcatcttcc cggattgctc ctgcgcgcgg tagggaatct
     2101 cgtcggcata gtcgcgtttt ttgccggggt cggcgatgcg tgaggcgatg agcgcgcgcg
     2161 ccaccgcgac cgtccacggc tggctcctgc tcctgcccgc catggcgctg ctcgtcgcct
     2221 tcacccattg gccggcggtc gcgaccttca tcgacagctt ctactcgacc ccgcggccgc
     2281 ggcggccgga gcggttcgtc gggctcgaca actaccggca gatcgtcgac gacccggtgt
     2341 tctggcagtc gctggtcaac aatctctggt acgcgctccg caccatcccg gtgt
//
LOCUS       DASQWN010000544         4396 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_942640, whole genome shotgun sequence.
ACCESSION   DASQWN010000544 DASQWN010000000
VERSION     DASQWN010000544.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 4396)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4396)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4396
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_942640"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1065
                     /locus_tag="VE686_10210"
     CDS             <1..1065
                     /locus_tag="VE686_10210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015952702.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl synthase N-terminal-like
                     domain-containing protein"
                     /protein_id="HYY84856.1"
                     /translation="APILSQRLAEVAADEAVSQARIGKSFPGPLFIAVPPVEMEWTQR
                     EALAEASGANGEVTYNDLLKAASTGRFKEWYDLFVFGTVGERIAERFGTKGSPISLST
                     ACSSGATAIQLGVESIRRGEAPAALCIATDGSVNPESLVRFSLLSALSTQNDPPEAAA
                     RPFSKNRDGFVMGEGAAALVLEDAEAARARGAKILGYVLGCGERGDAFHRTRSSPDGA
                     PIIAAVAAAIEDAGLSPDDIDYVNAHGTATPENDKMEAMGCMAVLGERMKIVPISSNK
                     SMIGHTLTAAGAVEAVFSLLTIQNGRIPPTINYEVPDPAIPLDVVPNTARDATVTHVL
                     SNSFGFGGQNTCLVFGAEPA"
     gene            1062..1811
                     /locus_tag="VE686_10215"
     CDS             1062..1811
                     /locus_tag="VE686_10215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019400860.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HYY84857.1"
                     /translation="MTGRVLVTGGAKGVGAAIVRALAAGGYDVDFTYRSSGDAGAALT
                     AELAAAHPERKVTAHAVDLADTAALDALCEALDGESFYGFVHNAGRPYDALAAMMAQD
                     KAEAVMQVNFWSFARLAKALIRGMVRARTGRIVAIGSAAALQGNPGNAAYAASKGALL
                     SYCRTLTVETAKRGITVNYLAPGFIDTDMLAPYAAYREQMEKQIPAGRFARPEEIAGL
                     AAFLMSPAAAYITGAVLPVDGGLTAMIGVQR"
     gene            1817..2839
                     /locus_tag="VE686_10220"
     CDS             1817..2839
                     /locus_tag="VE686_10220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012456748.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc-binding dehydrogenase"
                     /protein_id="HYY84858.1"
                     /translation="MKALQLFGDRDLRLSDIEPPPAPAEGEVQVRVRAIALNYLDLWG
                     FRGMAFAKRKMPQVTGVEAAGEVAAVGPGVSRFRVGDRVVMYGAETCGHCRACREGRD
                     NLCENVGGILGFHLDGFARELINRPERLVVPVPEGVSHEQAACAPIGFGTVQHMLFDN
                     AKLEPGESILVHAGGSGIGTAAVKMAKAIGCTVYATVGDDEKGAKAKALGADYVINYR
                     TERFEGEVRRLTKRKGVDVVFEHVGADTWNGSLLCLKRGGRLVTCGSTSGVSATMNLM
                     QLFQQQYRIFGSFGCSMKNIRESLDKMAQGLTPVIETVFPLERFQNGLDRLESRSVFG
                     KIVVTL"
     gene            complement(2885..4393)
                     /locus_tag="VE686_10225"
     CDS             complement(2885..4393)
                     /locus_tag="VE686_10225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018455927.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tripartite tricarboxylate transporter permease"
                     /protein_id="HYY84859.1"
                     /translation="MDILANVAQGFAVALVPVNLLYCFIGVFIGTLVGVLPGIGPVSA
                     MSLLLPVTLAGTPEAGIIMMAGIYYGSMYGGSTTSILVNIPGEAASVVTCLDGHAMAL
                     HGRAGPALGIAALGSFFAGTFAIVALMLVAPTLAIWAVAFGPAEYFSLMVLGLVVLTF
                     LTQGSMAKALLMACVGAVLGLIGLDSITAQPRLTFDRMELYDGIGLVPVVMGLFGLAE
                     VLSNLERPIARQVIKTKLSQLWPNRADWKASAGPMARGTVLGFFLGILPGGGAVISSF
                     ASYALEKRLSKTPERFGRGAIEGVAGPEAANNAAAGGAFIPLMTLGIPPNVVMALLLG
                     AFIIHGLQPGPLLMTQNPTLFWGIIVSMYIGNAMLLVLNLPLVGMWAQLLRVPYNVLF
                     PLIVLFSIVGVYCSSNNVFDVYVMIGFGILGYLMRKTGYEPAPLVLAFVLGPMLENNL
                     RKALILSQGDLTTFVSRPISAVCLAVAAVLLISPLLPALRRKREAVALDETS"
BASE COUNT          725 a         1519 c         1530 g          622 t
ORIGIN      
        1 gcgccgatcc tctctcagcg gctggccgaa gtcgcagccg acgaagccgt cagccaggcc
       61 cggatcggca agagtttccc cggtccgctg ttcatcgccg tgccgccggt cgagatggag
      121 tggacgcagc gcgaggcgct cgccgaagcc tcgggcgcga acggcgaggt gacctacaac
      181 gacctgctca aggcggcgtc gaccggccgc ttcaaggagt ggtacgacct cttcgtcttc
      241 gggaccgtcg gcgagcgcat cgccgaacgg ttcgggacca agggctcacc catctccctc
      301 tcgaccgcct gctcgtccgg cgcgacagcg atccagctcg gcgtcgagtc gatccgccgc
      361 ggcgaggctc cggcggccct gtgcatcgcg accgacggct cggtgaaccc ggagtcgctg
      421 gtgcgcttct cgctcctctc ggccctctcg acgcagaacg atccgcccga ggcggcggcg
      481 cggccgttct cgaagaaccg cgacggcttc gtcatgggcg agggcgcagc cgcactcgtc
      541 ctcgaggacg cggaggcggc gagggcccga ggcgcgaaga tcctcggtta cgtgctcggc
      601 tgcggcgagc gcggcgacgc tttccaccgc acccggtcga gccccgacgg ggcgccgatc
      661 atcgccgccg tcgcggccgc gatcgaagac gccgggctct cgcccgacga catcgactac
      721 gtcaacgccc acggcaccgc gacgcccgag aacgacaaga tggaggccat gggctgcatg
      781 gccgtgctcg gcgagcgcat gaagatcgtg ccgatctcgt ccaacaagtc catgatcggc
      841 cacacgctga cggctgcggg ggccgtcgag gccgtgttct cgctcctgac gatccagaac
      901 ggccgcatcc cgcccaccat caactacgag gtccccgacc ccgcgatccc tctcgacgtg
      961 gtcccgaaca ctgcgcgcga cgcgaccgtg acgcacgtgc tctcgaactc cttcggcttc
     1021 ggcgggcaga acacctgcct cgtcttcgga gccgagccgg cgtgaccggg cgcgttctcg
     1081 tcaccggcgg ggcgaagggg gtcggggcgg ctatcgtccg ggctctcgca gcgggcggct
     1141 acgacgtcga tttcacctat cgctcctccg gcgacgccgg cgcggcgctc accgcggagc
     1201 tcgccgcggc gcaccccgag cgcaaggtca ccgcccacgc tgtcgatctg gccgacacgg
     1261 ccgccctcga cgcgttgtgc gaggctctcg acggggagag cttctacggt ttcgtccaca
     1321 acgccggccg gccctatgac gccctcgcgg ccatgatggc gcaggacaag gcggaggccg
     1381 tcatgcaggt gaacttctgg tccttcgctc ggctggccaa ggcgctcatc cgcggcatgg
     1441 tccgggcgcg cacgggacgc atcgtcgcca tcggctcggc cgccgccctg cagggcaatc
     1501 ccggcaacgc cgcctatgcg gcttcgaaag gcgcgctttt gtcgtactgc cgcacgctga
     1561 cggtcgagac cgccaagcgc ggcatcacgg tcaattatct ggcaccgggc ttcatcgaca
     1621 cggacatgct cgccccctac gctgcctacc gcgagcagat ggagaagcag atccccgccg
     1681 ggcggttcgc ccggcccgag gagatcgccg gccttgctgc cttcctgatg agccccgcgg
     1741 ccgcctacat caccggcgcc gtgcttcccg tcgacggcgg cctgacggcc atgatcggcg
     1801 tccagcggta gttcccatga aagcgcttca gctcttcggc gaccgcgacc tgcgcctcag
     1861 cgacatcgag cctccgcccg cgccggcgga gggcgaggtc caggtgcggg tgcgggcgat
     1921 cgcgctcaac tacctggacc tttggggctt tcgcggcatg gcgtttgcca agcgcaagat
     1981 gccccaggtc acgggcgtcg aggcggccgg cgaggtcgcg gcggtcgggc cgggcgtgtc
     2041 gcgcttccgg gtcggcgatc gcgtcgtcat gtacggcgcc gagacgtgcg gccactgccg
     2101 cgcatgccgc gaaggccgcg acaacctctg cgagaacgtc ggcggcatcc tcggcttcca
     2161 tctcgacggc ttcgcgcgcg agctcatcaa ccgccccgag cggctcgtcg tccctgtgcc
     2221 ggagggcgtg tcgcacgagc aggcggcctg cgcgccgatc ggcttcggga ccgtgcagca
     2281 catgctcttc gacaacgcca agctcgagcc gggagaatcg atcctcgtgc acgcgggcgg
     2341 gtcgggcatc ggcacggcag cggtcaagat ggccaaggcc atcggctgca ccgtctacgc
     2401 gacggtcggc gacgacgaga agggcgcgaa ggccaaggcg ctcggggccg actacgtcat
     2461 caactaccgc acggagcgct tcgagggcga agtgcggcgc ctgaccaagc gcaagggcgt
     2521 cgacgtcgtc ttcgagcacg tcggcgccga tacctggaac ggctcgctcc tgtgcctcaa
     2581 gcgcggcggg cgcctcgtga cctgcggctc gacctcgggc gtctcggcga ccatgaacct
     2641 gatgcagctc ttccaacagc agtaccgcat attcgggtcg ttcggctgct ccatgaagaa
     2701 catccgcgag tcgctcgaca agatggcgca ggggctcact cccgtgatcg agacggtgtt
     2761 tccgctggag cgttttcaga acgggctcga ccgtctcgag tcgcgcagcg tcttcggaaa
     2821 gatcgtcgtc acgctgtagc gccggtctgc ggcggccctc acccggtcgc gccgaggacg
     2881 cgcctcagct cgtctcgtcg agcgcaacgg cctcgcgctt gcggcgcagg gccggcagga
     2941 gcgggctgat cagcagcacg gccgcaaccg cgagacacac ggccgagatc ggccgcgaca
     3001 cgaaggtcgt aaggtcgccc tgcgacagga tcagcgcctt gcgcaggttg ttctccagca
     3061 tcgggccgag cacgaaggcg aggacgagcg gcgccggctc gtagcctgtc ttgcgcatca
     3121 gatagccgag gatgccgaag ccgatcatga cgtagacgtc gaagacgttg ttgctcgagc
     3181 agtacacgcc gacgatcgag aacagcacga tcaaggggaa gagcacgttg taaggcaccc
     3241 gcaacagctg cgcccacatg ccgacgaggg gcaggttgag gacgagcagc atggcgttgc
     3301 cgatgtacat gctgacgatg atcccccaga acagggtcgg gttctgggtc atcaggagcg
     3361 ggccgggctg gagcccgtga atgatgaagg cgccgagcag gagcgccatg acgacgttcg
     3421 gcgggatgcc cagcgtcatc agggggatga aggccccgcc ggccgcggcg ttgttggccg
     3481 cctccggccc ggcgacgccc tcgatggcgc cgcggccgaa gcgctccggc gtcttcgaga
     3541 ggcgcttctc gagcgcatag gacgcaaacg acgagatcac cgcgccgccg cccggcagga
     3601 tgccgaggaa gaagcccagc accgtgcccc gcgccatcgg tccggcgctc gccttccagt
     3661 cggcgcggtt cggccacagc tgcgacagct tggtcttgat cacctggcgg gcgatgggcc
     3721 gctcgaggtt cgacagcacc tcggcaaggc cgaagaggcc catgaccacc gggacgagcc
     3781 cgatgccgtc gtagagttcc atgcggtcga aggtgaggcg tggctgggcg gtgatcgagt
     3841 cgaggccgat gagcccgagc acggcgccga cgcaggccat gagcagggcc ttagccatcg
     3901 agccctgcgt gaggaaggtc agcaccacga gcccgagcac catcagactg aaatactcgg
     3961 ccgggccgaa ggcgacggcc cagatggcga gcgtcggcgc gacaagcatc agcgccacga
     4021 tggcgaaggt gccggcgaag aacgagccga gcgccgcgat gccgagcgcc ggccccgcgc
     4081 gcccgtggag cgccatggca tgcccgtcga ggcaggtgac gacggaggcg gcctcgccgg
     4141 ggatgttgac gaggatcgag gtcgtggagc ccccgtacat ggagccgtag tagatgccgg
     4201 ccatcatgat gatgccggcc tccggcgtcc ccgcgagcgt cacggggagg agcagcgaca
     4261 tcgccgagac cgggccgatg ccgggcagca cgccgacgag cgtgccgatg aacaccccga
     4321 tgaagcagta cagcaggttg acgggcacga gcgcgaccgc gaagccctgg gcgacgttgg
     4381 cgaggatgtc caccgt
//
LOCUS       DASQWN010000545         5431 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_843779, whole genome shotgun sequence.
ACCESSION   DASQWN010000545 DASQWN010000000
VERSION     DASQWN010000545.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 5431)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5431)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5431
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_843779"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..389
                     /locus_tag="VE686_10230"
     CDS             <1..389
                     /locus_tag="VE686_10230"
                     /EC_number="6.1.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009025864.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004820 - glycine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006426 - glycyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="glycine--tRNA ligase subunit alpha"
                     /protein_id="HYY84860.1"
                     /translation="GVDNGFELNFNGQDGSGKVTYGDVFLQAEQEYSRHNFEAADVDM
                     LFEQFRMAERACRDYLAFGDKGDRHEMALPAYDQCIKASHVFNLLDARGVISVTERQS
                     YILRVRELAKACGAAWLKTEGGRAAA"
     gene            386..823
                     /locus_tag="VE686_10235"
     CDS             386..823
                     /locus_tag="VE686_10235"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY84861.1"
                     /translation="MKTLAERHIRVAVTKVSYDLVLTSNLDTGVAKLAGTGRLVHHAD
                     PTMMLDDLGPVDLTIWGSTTEQLKMRAKTWPTRFDRVTGDYFGVSAAGEHRFDIFIAT
                     ERFMRLLDLAHGSRRAVITLRCEVSPDGAADLLREMEISAARG"
     gene            complement(905..1888)
                     /locus_tag="VE686_10240"
     CDS             complement(905..1888)
                     /locus_tag="VE686_10240"
                     /inference="COORDINATES: protein motif:HMM:NF016292.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HYY84862.1"
                     /translation="MRRRDVLLTLGPGLAAWSRNAGAQNRRPVIGFFGVHSSTTLAPT
                     LLPAFRRGLAEQGYVEGRNVTIEYLWADGLYERLPALVSELVTRNVDVIVAAGGSIAA
                     QAAKAATGSIPVIILAGDDPVRLGLVSSINRPGTNITGVAQLVVASEGKRLELMHELV
                     PAAKVIAFLTNPARSNSERQVAAMQVAAKAVGVELAVLEADDDGDLRSVLGTAKSRAG
                     ALIVGADPYFFVRHELIVSLVESHAIPTMYFFREFVAAGGLVSYGSNLANAFHQIGVY
                     AGKVLSGIKPAEMPMVQQSDKLELVLNATTAKKLGLAIPPTFLARADEVIE"
     gene            complement(1988..2896)
                     /gene="miaA"
                     /locus_tag="VE686_10245"
     CDS             complement(1988..2896)
                     /gene="miaA"
                     /locus_tag="VE686_10245"
                     /EC_number="2.5.1.75"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015933038.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0052381 - tRNA dimethylallyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (adenosine(37)-N6)-dimethylallyltransferase
                     MiaA"
                     /protein_id="HYY84863.1"
                     /translation="MADAKRAVLIAGPTASGKSALALALAQERAGVVLNADSMQVYRD
                     LRILTARPSEAEERAAPHRLYGHVDGAENYSVGRYLRDAAAALDEAWNAGLLPILVGG
                     TGLYFKALLEGLSEIPPVPAEIREEVRREAQGASAEDMHGRLAACDPESAARLHARDR
                     LRVQRAMEVFRATGRALASFRGSKTPGPLAGVEVKKLFLAPDRDATRARIDARFLAML
                     RDGALDEVRALGARGLDPMLPIMRAHGVPALLAHLRGEVTLEDAIAVGQSDTRRYAKR
                     QVTWFRHQMPGWTPVAPDEAAARFLP"
     gene            2905..3804
                     /gene="serB"
                     /locus_tag="VE686_10250"
     CDS             2905..3804
                     /gene="serB"
                     /locus_tag="VE686_10250"
                     /EC_number="3.1.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018387764.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0036424 - L-phosphoserine phosphatase
                     activity [Evidence IEA];
                     GO_process: GO:0006564 - L-serine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoserine phosphatase SerB"
                     /protein_id="HYY84864.1"
                     /translation="MTFVATLISSPARPSIEDDVLAEARRILGTRHPTRVLHGEVAAE
                     MLVDCDAPAAKALEAELRARFSGLPIDVAVLPSEGRRKRLFLADMDSTMIEQECIDEL
                     ADYVGLKAEVSQITERAMRGELPFEPALRERVALLRDLPIGVVDEIIARRITLMPGGR
                     TLVATMRANGAYACLVSGGFTMFTGPVAAKIGFDEHRSNRLAVAGEKLAGRVEEPILG
                     REAKRATLVELRERLGLSPQDTLAVGDGANDLAMLEAAGLGVAFRAKPAVAEAAHVRI
                     QHGDLTALLYLQGYAASEFVGAA"
     gene            complement(3960..>5431)
                     /locus_tag="VE686_10255"
     CDS             complement(3960..>5431)
                     /locus_tag="VE686_10255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009764093.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DegQ family serine endoprotease"
                     /protein_id="HYY84865.1"
                     /translation="RLTRLAARLVAAVLLVAAQALPALARGPESLADLADQVMGAVVN
                     ISAATTVEARGRTLPQMPQGTPFEDLFEEFFNRRGQQGPGGGDAPQQRQRRSNSLGSG
                     FVIDASGIIVTNNHVIGDANEITVIFHDGQRLKAEIIGKDSKIDLAVLRVKPEKPLKA
                     VPFGDSDKMRPGDWVMAIGNPFGLGGSVTAGIVSARGRNIESGPYDNYIQTDASINKG
                     NSGGPLFNMNGEVIGINTAILSPTGGSVGIGFAVPAATATAVIDQLRQFGETRRGWLG
                     VRIQNVDDATAEALNLGGARGALVAGVDEKGPAKPAGIEVGDVITRFDGKEVKDSRDL
                     PRIVASTPVGKAVDVTVVRKGKEQVKSVTLGRLEDNDRQQQAGLNQPPAEAPSVTRQA
                     LGLNLSSISDEVRKRFSIKENVKGVVVTRVDPNSPAADKRIQPGDVVVEVGQEPVATP
                     ADVTRRLDQLKKDGRKSALLLVSNAQGEVRFVALSLDKD"
BASE COUNT          791 a         1854 c         1935 g          851 t
ORIGIN      
        1 agggcgtcga caacggcttc gagctcaact tcaacggcca ggacggttcg ggcaaggtca
       61 cctatggaga cgtgttcctg caggccgaac aggagtattc gcgccacaac ttcgaggccg
      121 cggacgtcga catgctgttc gagcagttcc gcatggccga gcgcgcctgc cgcgactatc
      181 tcgcgtttgg cgacaagggc gaccgccacg agatggcgct tcccgcctac gaccaatgca
      241 tcaaggcgag ccacgtcttc aacctgctcg acgcccgggg cgtgatctcg gtcaccgagc
      301 gccagagcta catcctccgg gtccgcgagc tcgccaaggc ttgcggcgcg gcctggctca
      361 agacggaagg cgggagggcc gcggcttgaa gactcttgcc gagcgtcaca tccgcgtagc
      421 cgtcacgaag gtctcctatg acctcgtgct gacctcgaac ctcgacaccg gggtcgccaa
      481 gctcgccggc accgggcgtc tcgtccatca cgccgatccg acgatgatgc tcgacgacct
      541 cgggccggtc gacctcacga tctggggctc gacgaccgag cagctgaaga tgcgcgcgaa
      601 gacgtggccg acccgcttcg accgcgtgac cggcgactac ttcggcgtct cggcggcggg
      661 cgagcaccgc ttcgacatct tcatcgccac cgagcgcttc atgcgcctcc tggacttggc
      721 gcacggctcg cgccgcgctg tcatcacgct gcgctgcgaa gtctcccccg acggcgccgc
      781 cgacctcctg cgcgagatgg agatctccgc cgcgcggggg tgatcacaaa gccgtcccct
      841 cgagccggcg gcacgcgccg cggtcgccgg catcgacctc ggctgcaata gccggctcac
      901 cagctcattc gatcacttcg tccgcccggg caaggaaggt tggcggaatg gcgaggccga
      961 gcttcttggc cgtcgtggcg tttaggacga gttcgagctt gtccgactgc tgcaccatcg
     1021 gcatctcggc gggcttgatg ccgctgagca ccttgccggc atagacgccg atctggtgga
     1081 aggcgttggc gaggttcgag ccgtagctga cgaggccgcc cgccgcgacg aattcacgga
     1141 agaagtacat ggtcgggatc gcgtggctct cgacgagcga cacgatgagc tcgtgccgga
     1201 cgaagaaata cgggtccgcc cccacgatga gggcgcccgc cctcgacttt gccgtgccga
     1261 gcacgcttcg cagatcgccg tcatcgtcgg cctcgaggac ggcgagctcg acgccgaccg
     1321 ccttggcggc cacctgcatg gcggcgactt gccgttcgga gttcgaccgg gccggattgg
     1381 tcaggaatgc gatgactttc gcggccggga cgagctcatg catgagctcg agccgcttcc
     1441 cttcggaggc cacgacaagc tgcgccacac cggtgatgtt cgtgccgggc cggttgatgc
     1501 tcgagacgag accgagccgc acggggtcgt cgccggcaag gatgatcacc gggatcgatc
     1561 ccgtcgcggc cttcgccgcc tgtgccgcga tgctgccacc agccgcgacg atcacgtcga
     1621 cgttgcgggt gacgagctcg gacaccaacg ccggcagacg ctcgtacaag ccgtcggccc
     1681 acaggtactc gatcgtgacg ttgcgtcctt cgacgtagcc ctgttcggcg aggcccctgc
     1741 ggaaggcggg caggagtgtg ggggcgaggg tcgtcgagga gtgcaccccg aagaacccga
     1801 tcaccgggcg ccggttctgg gcgcccgcat tgcgcgacca agccgcgagg ccagggccga
     1861 gagtcaagag gacgtcgcgc cgtctcatcc gttcaccccg tcggcggtgg cgagcttgca
     1921 cgcaagcggt cgcgcagcga ggttagcacg ttgcatcgcg gcaagcagtt tgccgggcga
     1981 gcgagtctca cgggagaaac cgggcggccg cctcgtccgg cgcgaccggc gtccagccgg
     2041 gcatctggtg gcggaaccag gtgacctggc gcttggcata gcggcgggtg tcggactggc
     2101 cgacggcaat ggcgtcttcg agcgtgacct cgccgcgaag gtgggcgagg agggcgggga
     2161 cgccgtgggc gcgcatgatc ggcagcatgg gatcgaggcc gcgcgcaccc agcgctcgca
     2221 cctcgtcgag ggcgccgtcg cgcagcatcg ccagaaagcg cgcgtcgatg cgggcccggg
     2281 tggcgtcgcg gtcgggagcg aggaagagct tcttcacctc cacgccggcg agcgggcccg
     2341 gcgtcttgct gccgcggaag gaggcgaggg cgcggcccgt cgcgcggaac acctccatgg
     2401 cgcgctgcac ccggaggcgg tcgcgggcgt gtagcctggc ggcggactcc gggtcgcagg
     2461 ccgcgagtcg cccatgcatg tcctcggcgc tggcgccctg cgcctcccgg cgcacctcct
     2521 cgcggatttc cgccggcacg ggcgggatct ccgacaggcc ttccagcagc gccttgaagt
     2581 agaggccggt gccgccgacc aggatcggga gaagccccgc gttccatgcc tcatcgagcg
     2641 cggccgccgc gtcgcgcaga taacgcccga ccgaatagtt ctccgcacca tccacgtggc
     2701 cgtagagccg atgcggcgcg gcgcgctctt ctgcctcgct cggccgcgcc gtgaggatgc
     2761 gcagatcgcg gtagacctgc atcgagtcgg cgttgaggac gacgccggcg cgctcctgcg
     2821 cgagcgcgag cgccagggcc gacttgcctg aggcggtggg ccctgcgatg aggaccgccc
     2881 gtttcgcgtc agccatctgc ttccgtgacc ttcgtcgcca ccctcatatc aagcccggcc
     2941 cggccgtcca tcgaggacga cgtgctggcc gaggcgcgtc gcatcctggg cacgcgccat
     3001 ccgacgcggg tgctccatgg cgaggtcgcg gcggagatgc tggtcgactg cgacgccccg
     3061 gccgccaagg cgctcgaggc ggagctgcgc gcgcgctttt ccgggctgcc catcgatgtc
     3121 gccgtcctgc cgtccgaggg ccggcgcaag cgcctgttcc tcgccgacat ggactccacc
     3181 atgatcgagc aggagtgcat cgacgagctc gccgactatg tgggcctgaa ggccgaggtg
     3241 tcgcagatca ccgagcgcgc catgcgcggc gagctgccct tcgagcccgc cctgcgcgag
     3301 cgcgtggcgc tcctgcgcga cctgccgatc ggcgtggtgg acgagatcat cgcgcggcgc
     3361 atcacgctca tgccgggcgg gcgcaccctc gtggcgacca tgcgggcgaa cggcgcctac
     3421 gcgtgcctcg tgtcgggcgg cttcacgatg ttcactggac cggtggcggc caagatcggc
     3481 ttcgacgagc accgctcgaa ccgcctcgcg gtcgccgggg agaagctcgc cggccgggtg
     3541 gaggagccga tcctcgggcg cgaggccaag cgcgcgaccc tcgtcgagct gcgcgagcgg
     3601 ctgggcctga gccctcaaga caccctggcg gtcggcgacg gggcgaacga cctcgccatg
     3661 cttgaggcgg cgggactcgg ggtcgccttc cgggcaaagc cggcggtcgc cgaagccgcc
     3721 cacgtgcgca tccagcacgg cgatctcacg gcgcttctct acctgcaagg ctacgcggcg
     3781 agcgagttcg ttggcgccgc gtaggccgga acggctccgg cgcgtcgtgg gatgtgatgt
     3841 gtcgattgtc cacggaccga ttcttcagac cgcgttgcgg cgtccggacg taagcatctg
     3901 cggcgcatga caaaaagggc ggccgaagcc gcccttttgc attttgctct tgtcctgcgt
     3961 cagtccttgt cgagcgaaag cgccacgaag cgaacttctc cctgggcgtt ggagaccaga
     4021 aggagcgccg acttgcggcc gtctttcttg agctggtcga gacgacgggt gacgtccgcc
     4081 ggcgtcgcga ctggctcctg accgacctcg acgaccacgt cgccgggctg gatgcgcttg
     4141 tccgccgcgg gagagttcgg gtcgacgcgg gtgaccacga cgcccttgac gttctccttg
     4201 atgctgaagc gcttgcggac ctcgtcgctg atgctcgaca ggttgaggcc gagggcctgg
     4261 cgcgtgacgc tcggcgcttc cgcgggcggc tggttgaggc ccgcctgctg ctggcggtcg
     4321 ttgtcctcga ggcgcccgag ggtcaccgac ttcacctgct ccttgccctt gcggacgacg
     4381 gtgacgtcga cggccttgcc gaccggggtg ctcgcgacga tgcgcgggag gtcgcggctg
     4441 tccttcacct ccttgccgtc gaagcgcgtg atgacgtcgc cgacctcgat gccggcgggc
     4501 ttcgccggac ccttctcgtc gacgccggcg acgagcgcgc cgcgggcgcc gccgaggttc
     4561 agggcttccg cggtcgcgtc gtcgacgttc tggatgcgga cgccgagcca gccgcggcgg
     4621 gtctcgccga actggcgcag ctggtcgatc accgccgtcg ccgtcgccgc cggcaccgcg
     4681 aagccgatgc cgaccgagcc gccggtcggc gacaggatcg ccgtgttgat gccgatgacc
     4741 tcgccgttca tgttgaacag gggcccgccc gagttgccct tgttgatgga cgcgtcggtc
     4801 tggatgtagt tgtcgtacgg ccccgactcg atgttccgcc cccgcgccga gacgatgccg
     4861 gcggtgaccg agccgccgag gccgaacggg ttgccgatcg ccatcaccca gtcgcccgga
     4921 cgcatcttgt ccgagtcgcc gaacgggacg gccttcaacg gcttctcggg cttcacgcgc
     4981 aggacggcga ggtcgatctt ggagtccttg ccgatgatct cggccttgag acgctgcccg
     5041 tcatggaaga tgacggtgat ctcgttggcg tcgccgatga cgtggttgtt cgtgacgatg
     5101 atgccggatg cgtcgatgac gaagccggag ccgagagagt tcgagcggcg ctggcgctgc
     5161 tgaggggcat ccccgccgcc cgggccctgc tggccgcggc ggttgaagaa ctcctcgaac
     5221 aggtcctcga acggcgtccc ctggggcatc tgcggcaggg tgcggccgcg ggcctcgacg
     5281 gtggtggccg ccgagatgtt cacgaccgcg cccatcacct ggtcggcgag gtcggcgagc
     5341 gattccgggc cgcgggcgag cgcgggcagc gcctgcgcgg cgacgagcag gaccgcggcg
     5401 acgagccgcg ccgcgaggcg ggtgaggcgc a
//
LOCUS       DASQWN010000546         4635 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_446859, whole genome shotgun sequence.
ACCESSION   DASQWN010000546 DASQWN010000000
VERSION     DASQWN010000546.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 4635)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4635)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4635
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_446859"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..957
                     /locus_tag="VE686_10260"
     CDS             <1..957
                     /locus_tag="VE686_10260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012029370.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoacid:acceptor oxidoreductase subunit alpha"
                     /protein_id="HYY84866.1"
                     /translation="GISLMQEFIGLAYFAEVPAVIFDVQRGGPSTGMPTRTQQSDILL
                     AAYASHGDTKHVLLFPEDPRECFEFAAEAFDLADRLQTPVFVLLDLDIGMNEWLCEPL
                     AWDDGRAFDRGKVLTAGDLEAGREFGRYLDVDGDGIPFRTYPGTHPSKGAFFTRGTSR
                     DRYARYTEEGAAYVDNMQRLLRKFETAKSFVPAPIRRDANEPTRYGALYFGSTAPAMD
                     EAIAALEAKGVHLDTLRVRAFPFSEEVIDFILGHDQVFVIEQNRDAQLRALLLNEGAI
                     DPTRLISVLHYDGTPITARFIVDEIARRWALITGPARKEAAE"
     gene            954..2009
                     /locus_tag="VE686_10265"
     CDS             954..2009
                     /locus_tag="VE686_10265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015664952.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoacid:ferredoxin oxidoreductase subunit
                     beta"
                     /protein_id="HYY84867.1"
                     /translation="MTYLAKPKLHHPKLPENALGFTRRDYEGAVSTLCAGCGHDSISG
                     AIIQACFELSLPPHRVAKLSGIGCSSKTPTYFLGASHGFNSVHGRMPSVLTGASLANR
                     ELIYLGVSGDGDSASIGLGQFAHCIRRGVNMVYIVENNGVYGLTKGQFSATADKGSKS
                     KKGVGNQDSPIDLASMAMLLGATFVARSFSGDKGQLVPLIKAAIEHRGAAFIDVISPC
                     VAFNNHPDSTKSYDYVREHNEAVNFLDVMVGREEITIDHAPGSVEFVTQHDGSILKLR
                     KVAPEHDATDKLAAMSFMQRHQAHGEIVTGLLYVDPDSEELHDRLDTVERPLNALAEP
                     DLCPGSGALAKVNASLR"
     gene            2166..2585
                     /locus_tag="VE686_10270"
     CDS             2166..2585
                     /locus_tag="VE686_10270"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HYY84868.1"
                     /translation="MSGAKSALPCCLVVEDQALIGMALEASLEDAGFQISGPFARAGD
                     ALRWLKANTPDIALLDLVLGDGPCTQLATTLRERGVPFAIYSGVRPPAIRPPEFDGVP
                     WLEKPVSRSDLAAVLADLARTSAAALLAVVPVPAGYA"
     gene            2644..2859
                     /locus_tag="VE686_10275"
     CDS             2644..2859
                     /locus_tag="VE686_10275"
                     /inference="COORDINATES: protein motif:HMM:NF037848.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016989 - sigma factor antagonist activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NepR family anti-sigma factor"
                     /protein_id="HYY84869.1"
                     /translation="MTFSRTGSAGPIPSRRPSDQPRDPKTAPLPPVQDVVGERLRAVY
                     SQILRDPIPQRFVELLDRLDGGTEDRA"
     gene            2862..3413
                     /locus_tag="VE686_10280"
     CDS             2862..3413
                     /locus_tag="VE686_10280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009494035.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HYY84870.1"
                     /translation="MVIEPAVRDAMYAALPHLRAFAISLTGSLDRADDLVQETLLRAL
                     SNLDRFERGTNLQAWMFTILRNLFHSDYRKRRREIEDPEGAFAEKLAVMPEQGAKLDF
                     DDMRIALTKLSPEQREAILLVGAEGLTYEEAAVVCGVVVGTIKSRVNRARNRLSELLQ
                     LDGADEIGPDRLVRAVLETRHPG"
     gene            complement(3543..3791)
                     /locus_tag="VE686_10285"
     CDS             complement(3543..3791)
                     /locus_tag="VE686_10285"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY84871.1"
                     /translation="MKKLFLALVAAATLVPTASWAQGFSVGPGGVRVDSGDRYERRWD
                     GDRGRRGWREDRRRGCRVTIVKKRNEWGRMETKRIERC"
     gene            3944..>4635
                     /locus_tag="VE686_10290"
     CDS             3944..>4635
                     /locus_tag="VE686_10290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018457102.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TRAP transporter substrate-binding protein"
                     /protein_id="HYY84872.1"
                     /translation="MRRTLLKLAVLAGALFAAPLAQAQQVITLHGASQFNDDHAFTKA
                     LVKFEELVKQYYGKPINFVLHKNSELGLEKDYFAYMNQGISVDYAIVSPAHMSTFSRA
                     APFIDAPFLFKDLAHWNKVLDADILKPVADEIAQKADVMLIGYAGGGVRNIFSNKPAK
                     NLAELKGLKVRVQGAPIWSRTFQAIGMSPTVIAYNEVYNAIQNGVINAGENEAAGVES
                     MKFFEVGPNLLMT"
BASE COUNT          779 a         1652 c         1464 g          740 t
ORIGIN      
        1 ggcatctcgc tgatgcagga gttcatcgga ctggcgtact tcgccgaggt tccggcggtg
       61 atcttcgacg tgcagcgcgg tgggccttcg accggcatgc cgacgcgcac gcagcagtcc
      121 gacatcctgc tcgccgccta cgcctcccac ggcgacacca agcacgtgct cctgtttcca
      181 gaggacccgc gcgagtgctt cgagttcgcc gccgaggctt tcgacctcgc cgaccggctg
      241 cagacgccgg tattcgtgct tctcgacctc gacatcggca tgaacgagtg gctgtgcgag
      301 cctctcgcct gggacgacgg ccgcgctttc gaccggggca aggtgctcac cgccggcgac
      361 ctcgaggccg gccgcgagtt cggccgctac ctcgacgtcg acggagacgg catcccgttc
      421 cgtacctatc cgggcacgca cccgtccaag ggcgcgttct tcacccgcgg aacctcgcgc
      481 gaccgctacg cccgctatac ggaggaggga gcggcctacg tcgacaacat gcagcgcctc
      541 ctgcgcaagt tcgagacggc gaagtcgttc gtgcccgcgc cgatccggcg tgacgccaac
      601 gagccgacgc gctacggcgc cctctacttc ggctcgacag cgccggccat ggacgaggcg
      661 atcgcggcgc tcgaggcaaa gggcgtgcac ctcgatacgc tgcgcgtgcg agcctttccg
      721 ttctcggagg aggtcatcga cttcatcctg gggcacgacc aggtcttcgt catcgagcag
      781 aaccgcgacg cgcagctgcg cgcgcttctc ctgaacgagg gcgccatcga cccgacgcgc
      841 ctcatctcgg tgctgcacta cgacgggacg cccatcacgg cccgcttcat cgtcgacgag
      901 atcgcccggc gctgggcgct catcacggga ccggcgcgca aggaagccgc ggaatgacct
      961 atctcgcgaa gcccaagctg catcatccga agctgcccga gaacgcgctc gggttcacgc
     1021 ggcgcgacta cgagggtgca gtctcgaccc tgtgcgccgg atgcgggcac gattcgattt
     1081 cgggtgccat catccaggcc tgcttcgagc tgtcgctgcc gccgcaccgc gtcgcgaagc
     1141 tctcgggcat cggctgctcg tcgaagacgc ctacctactt cctcggcgcc agccacggct
     1201 tcaactcggt gcacgggcgc atgccctcgg tgcttaccgg agcgagcctg gccaaccggg
     1261 agctcatcta cctcggcgtg tcgggcgacg gcgattcggc ctcgatcggc cttgggcagt
     1321 tcgcgcactg catccggcgg ggcgtgaaca tggtctacat cgtcgagaac aacggggtct
     1381 acggccttac caagggccag ttctcggcca ccgccgacaa gggctcgaaa tcgaagaagg
     1441 gcgtcggcaa ccaggacagc ccgatcgacc tcgcctcgat ggcgatgctg ctcggggcga
     1501 ccttcgtggc gcgctcgttc tcgggcgaca agggccagct cgtcccgctc atcaaggcag
     1561 cgatcgagca ccgcggcgcc gctttcatcg acgtgatcag cccctgcgtc gccttcaaca
     1621 accatccgga ctcaacgaag agctacgact acgtgcggga gcacaatgag gccgtgaact
     1681 tcctcgacgt gatggtcgga cgcgaggaga ttaccatcga ccacgccccg ggatcggtcg
     1741 agttcgtgac gcagcacgac ggctcgatcc tgaagctgcg caaggtcgcg cccgagcacg
     1801 atgctaccga caagctcgcg gcgatgtcgt tcatgcagcg ccaccaggcg cacggcgaga
     1861 tcgtcacggg gctgctctac gtcgaccccg attcggagga actgcacgac cgcctcgaca
     1921 cggtcgagcg tcccctcaat gccctcgccg aaccggacct ctgtccgggc agcggcgctc
     1981 tcgccaaagt caacgccagc ctgcgctgag gcgcccgccg cgacacttga tgtttgtgaa
     2041 tgcgggcgcc ctcacgcgcg catacgaccg gggtttgggg ggcgggagtc gcccccctct
     2101 acacacatcg tgcccgcttg ggccccgatc cggcgccgcg ccacccccat cgaaagctcg
     2161 acctgatgtc cggcgctaaa tccgccttgc cctgctgcct tgtcgtcgag gaccaggccc
     2221 tcatcgggat ggcccttgag gcgtccctcg aggacgccgg ctttcagatc tccgggccgt
     2281 tcgcgcgggc cggggacgcg ctgaggtggc tcaaggcaaa caccccggat atcgcgctcc
     2341 tggacctcgt cctcggcgac ggcccctgca cgcagctcgc gacgacgctg cgcgagcgcg
     2401 gtgtgccgtt cgccatctac tcgggagtgc gcccgcccgc catccgtccg ccggagttcg
     2461 acggcgtgcc atggctcgag aagccggtga gccgcagcga tctcgccgcg gtgctggccg
     2521 acctcgcccg cacgagcgcg gccgcgctgc ttgccgtggt ccccgttccg gccggatacg
     2581 cctgaccgcc ctcgttcacc taagtgaatg cgagatgaag gcgaccccag ctatccggga
     2641 tcgatgacgt tctcccgcac cggcagcgcc ggcccgatcc cctcccgccg tccatccgat
     2701 cagccccgtg acccaaaaac ggccccgctc ccgcccgtgc aggacgtcgt cggcgagcgg
     2761 ctgcgggcgg tgtactccca aatcctgcgc gatccgatcc cgcaacgctt cgtagagctt
     2821 ctcgatcgcc tggacggtgg gaccgaggac cgcgcgtgag cgtggtcatc gagccggcgg
     2881 tccgcgacgc catgtacgcg gccctgccgc acttacgcgc cttcgcgatc tccctgaccg
     2941 gcagcctcga ccgcgccgac gacctcgtcc aggaaaccct gctgcgggcc ttgagcaacc
     3001 tcgaccggtt cgagcgcggc accaatctgc aggcgtggat gttcacgatc ctgcgcaacc
     3061 tgttccactc cgactaccgc aagcgccggc gcgagatcga ggacccggaa ggcgccttcg
     3121 ccgagaagct cgcggtgatg ccggagcagg gcgccaagct cgatttcgac gacatgcgca
     3181 tcgcgctgac gaagctctcg cccgagcagc gcgaggcgat cctgctcgtc ggtgcggagg
     3241 gcctcaccta cgaggaggcc gcggtggttt gcggcgtcgt cgtcggcact atcaagagcc
     3301 gggtcaaccg cgcccgcaac cggctttcag agctgctgca gctcgacggc gccgacgaga
     3361 tcggccccga tcgcctggtc cgcgccgtcc tcgagacccg ccacccgggc tgaggccctt
     3421 gtgatcggcg gtgcatcatc atgacgatgg tgcggcgcgc gccgatcatc atgaccgcgc
     3481 ggcaggccgg acagcctcta aacgggcgcg aaggcgagct ggcccgccct cgcgcctggt
     3541 tgctagcagc gctcgatgcg cttcgtctcc atgcggcccc actcgttccg cttcttgact
     3601 atagtgacgc ggcagccgcg gcggcgatcc tcacgccagc cgcgccggcc gcgatcgcca
     3661 tcccagcggc gctcatagcg gtcccctgag tcgacccgga cgccgccggg gccgaccgag
     3721 aagccttgcg cccatgaggc agtgggaacg agggtggcag cggcgacgag cgccagaaat
     3781 agcttcttca tgcgatatcc tccatcgaag agcggcacct tgccccggcc tacattgacc
     3841 tgaggtgaac gcggcaggtg cgccacaccg ttggacaacc cggcagcgcc tgtccatagt
     3901 gcctctgagc tcctgccaaa acggagcatc gagggagagg acgatgagac gaacgctgct
     3961 caagctcgca gtgctggccg gcgccctttt cgcggcaccg ctcgcccagg cgcagcaggt
     4021 catcacgctg cacggcgcgt cgcagttcaa cgacgaccac gccttcacca aggcgctggt
     4081 gaagttcgag gagctggtga agcagtatta cggcaagccg atcaacttcg tcctgcacaa
     4141 gaactcggag ctcggcctgg agaaggacta tttcgcctat atgaaccaag gcatctcggt
     4201 cgactacgcg atcgtgtcgc cggcccacat gtcgacgttc tcgcgcgccg cccctttcat
     4261 cgacgcgccg ttcctgttca aggatctggc ccactggaac aaggtgcttg acgccgatat
     4321 cctcaagccc gttgccgacg agatcgccca gaaggccgac gtgatgctga tcggctacgc
     4381 cggcggcggc gtgcggaata tcttctccaa caagccggcc aagaacctcg ccgagctcaa
     4441 aggactgaag gtgcgcgtcc agggcgcccc gatctggagc cggacgttcc aggcgatcgg
     4501 catgtcgccg acggtcatcg cctacaacga ggtctacaac gccatccaga acggcgtcat
     4561 caatgcaggc gagaacgagg ccgccggggt cgagtcgatg aagttcttcg aggtcggccc
     4621 gaacctcctg atgac
//
LOCUS       DASQWN010000547         3429 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_247807, whole genome shotgun sequence.
ACCESSION   DASQWN010000547 DASQWN010000000
VERSION     DASQWN010000547.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 3429)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3429)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3429
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_247807"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(93..166)
                     /locus_tag="VE686_10295"
     tRNA            complement(93..166)
                     /locus_tag="VE686_10295"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(130..132),aa:Arg,seq:tcg)
     gene            complement(392..655)
                     /locus_tag="VE686_10300"
     CDS             complement(392..655)
                     /locus_tag="VE686_10300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018459399.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GlsB/YeaQ/YmgE family stress response membrane
                     protein"
                     /protein_id="HYY84873.1"
                     /translation="MGFIWTIIIGFVAGLIAKFLHPGPNEPSGFILTTILGIVGAFVA
                     TWLGQALGWYRPGEGAGLIGAVVGAVIVLAIWSMIARRSTRSI"
     gene            complement(925..2172)
                     /locus_tag="VE686_10305"
     CDS             complement(925..2172)
                     /locus_tag="VE686_10305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004115169.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF763 domain-containing protein"
                     /protein_id="HYY84874.1"
                     /translation="MARRAGSADLPLHGGRVPRWLGDRMTRLGAVVSQAIVHHYGRDE
                     LLRRLAHPFWFQSFGAVMGMDWHSSGITTSVIGALKRGLTPLSGELGIHVCGGRGKHS
                     RQTPHELVTIGDQVGFNGADLARSSRLVAKVDSAAVQDGFDLYLHGFIVTDDGNWVVV
                     QQGMNGDLRQARRYHWLSEGLTSFVDEPHAAIDGPGQGNIINITDRRADRSRRAQVDV
                     LSSLGPDRIVQELEALSPAATESAQLSLPHLLMPTRHDVRPSDIVLRRLHGNLAAAAD
                     RGPTDFTELLLTPGVGARTVRSLAMVAEVVHGAPYRFSDPARFSLAHGGKDRHPFPVP
                     TRVYDETIRVLKSAVQKAKLGNDEELSAIKRLDAQARALECDAAGLGLSQIVAGELDR
                     SPEYGGRSVFGWEPLSSASRTAG"
     gene            complement(2177..2776)
                     /locus_tag="VE686_10310"
     CDS             complement(2177..2776)
                     /locus_tag="VE686_10310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012592332.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1993 domain-containing protein"
                     /protein_id="HYY84875.1"
                     /translation="MGLPTGHTSINALTGCDSHPRKDQPMSLSISQASVPVFEVGLNA
                     LSGVLDKAASFAAAKKVEESVLVGWRLAPDMLALARQVQIASDMAKNGAARLGGVEPP
                     RFEDTETTIQQLKERIEKTLAFVKTVDTTAIDASADREITFPLGPTNKGQMRGVDYLN
                     HFVLPNFYFHLTAAYAILRHCGVELGKRDFLGAIPMKMT"
     gene            complement(3093..3302)
                     /locus_tag="VE686_10315"
     CDS             complement(3093..3302)
                     /locus_tag="VE686_10315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012452746.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005829 - cytosol [Evidence IEA];
                     GO_function: GO:0001072 - transcription antitermination
                     factor activity, RNA binding [Evidence IEA];
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0003723 - RNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cold-shock protein"
                     /protein_id="HYY84876.1"
                     /translation="MPTGIVKWFNETKGYGFIQPDQGGKDVFVHVSAVERSGMRGLAE
                     GMKISYDVEADRKSGKEAATNLKAV"
BASE COUNT          634 a         1130 c         1049 g          616 t
ORIGIN      
        1 tggccacctc ctatcgggat ccgtcgtgac actgcagagt gtgacgacag accgagcctc
       61 ttcccctcgc atctcgctgt caatccgaaa cacggccgcg acagggttcg aacctgtaac
      121 cctcagcttc gaaggctgat gctctatcca gttgagctac gcggcctaga gccaacgcgc
      181 gggatctcaa cagcgtcatc tagcccgccg atccactcag cgccggacgg ttcgcttgac
      241 tcggtcctcg atctcagtgg cgacgagcaa tccagcaagt atggcggcag ccggcactaa
      301 cccgtccacc aaagcgctca cggccgagcc tctctgtagc ctcgcggtcg gcacccacct
      361 cgggagcccc gcttgacaac atgcccgggc ctcagatgct cctggtgctc cggcgagcaa
      421 tcatgctcca aatcgcgagc acgatgaccg ccccaacgac tgcgccaatc aacccagcac
      481 cttctccggg acggtaccac ccaagagctt ggcctagcca cgtagcgacg aatgcgccca
      541 cgatcccaag gatggttgtc agaatgaagc cggatggttc gttcgggccg ggatggagga
      601 acttcgcgat caagcccgct acgaacccga tgattatcgt ccaaatgaag cccacgttac
      661 gatcctccct cacagcttgg acagacactc tctcgcatta gcgtcctcat cgcaaacacg
      721 ggatacgata aagcgagcca gagccccgag tgaggtctgt gcggcccagc gaaagcgggt
      781 gcagtagtgc agctccccga cgcgctcgcc gctggagctc agaaaaacat gcggttctag
      841 gacacggtca gcgggcgaca cgctgcgcgt ctgcctgcca cgccacccac ttgccctcgc
      901 ccgcggcgcg cgtggatgca gcgctcagcc tgccgtccga cttgcggacg acaggggctc
      961 ccatccgaac acgctccgcc cgccatactc aggggacctg tcgagctcac ccgctacgat
     1021 ctgggataaa cctagtccag cggcatcgca ctcgagggct cgggcctgag catcgaggcg
     1081 cttgattgca ctgagctcct catcattgcc aagcttcgct ttctgaaccg ccgatttcag
     1141 cacacggatg gtctcgtcgt agacgcgcgt cggcactgga aacgggtggc ggtccttgcc
     1201 gccgtgggcg agcgagaagc gggccggatc gctgaagcgg tagggcgctc catgcacgac
     1261 ctcggcgacc atcgcgagcg atcgaacggt ccgcgccccc acgcccggcg ttaacagcag
     1321 ctcagtgaag tccgttgggc cgcgatctgc tgcggccgca agattgccgt gcaatcggcg
     1381 gagcacgata tcgcttggcc tgacgtcgtg gcgcgtcggc atgagcaaat gcggaagcga
     1441 cagctgagca ctttccgtcg cagcaggcga aagagcctct agctcctgca cgatccggtc
     1501 gggtccgagc gacgacagca catcgacctg agcgcggcgg gagcgatccg cgcgtcggtc
     1561 cgtgatgttg atgatattcc cctgccccgg cccgtcgatt gcggcatgag gctcgtccac
     1621 aaagctcgta agtccttccg agagccagtg gtaccgacgc gcctgtcgaa gatcaccgtt
     1681 cattccttgc tgaacgacga cccagttgcc gtcgtccgtc acgatgaagc cgtggaggta
     1741 gagatcgaag ccgtcctgaa ccgcagcact gtcaactttg gccacgaggc ggctcgagcg
     1801 cgcgaggtcc gcgccattga agcccacttg atcgccgatc gtgacgagtt cgtgcggcgt
     1861 ttggcgtgag tgcttcccgc ggccaccgca cacgtgaatg ccgagctcgc ccgacaacgg
     1921 cgtaagcccg cgtttgagcg cacctattac gctcgtcgtg atcccggacg agtgccagtc
     1981 catgcccatg acggctccga aggactggaa ccagaatggg tgggcgaggc ggcgcagcag
     2041 ttcgtcacgt ccgtagtgat ggacgatcgc ttggctcacg acggcgccaa gacgcgtcat
     2101 gcgatcgcca agccacctcg gcacgcgccc cccgtggagg gggaggtcgg cgctgccagc
     2161 ccgtcgagcc attgtctcag gtcatcttca tcgggatggc gccgaggaag tcgcgtttgc
     2221 cgagctccac gccgcaatgg cgcaggatcg cgtaagccgc ggtcaggtgg aaatagaagt
     2281 tcgggagcac gaagtggttc aggtaatcga cccctcgcat ctggcccttg ttcgtcgggc
     2341 cgagcggaaa cgtgatctct cggtcggctg aggcgtcgat tgcggtcgtg tcgaccgttt
     2401 tgacgaacgc gagcgtcttc tcgatgcgct ctttgagctg ttggattgtc gtctcggtat
     2461 cttcgaaacg agggggctcg acgcccccga gacgcgccgc cccgttcttt gccatgtccg
     2521 aagcgatctg cacctggcgc gccagcgcca gcatgtcagg ggcgaggcgc cacccgacga
     2581 gcacagactc ctccaccttt ttcgccgccg cgaacgacgc ggccttgtcg agcacgcctg
     2641 agagcgcgtt cagcccgacc tcgaacacag ggacagaggc ctgagaaatc gagagtgaca
     2701 tgggttggtc cttacgaggg tgcgaatcac agccagtgag agcgttgata gaggtgtgac
     2761 cggtcggcaa gcccattgcg ggagcacgcg tcggggtggg tgcggatgaa gcactcccga
     2821 ttccagcgcc tcgaacggcg gttcctcgcc agcaggccga accggcgccc tcgatatccc
     2881 cttgcccctg cggttatcgc cgttgcactg gtcgtggccg ccgcaaccct tcttcactgg
     2941 ccgcaggatc aaacagtcag ctccttgatc aggagcgtcg cgagcttcgg ctccggtatc
     3001 cgcgtcgtcg atggcgacac tgtcgatgcc gttgtgccac cgggcgggag aggcgacgcg
     3061 agacgaggcg cgcgcgtcgg acacctcgcc ggtcagactg ccttcaggtt cgtcgcggct
     3121 tccttgccgc tcttgcgatc tgcttccacg tcgtaggaga tcttcatccc ttcagcgagg
     3181 ccgcgcatcc ccgaccgctc cacagcactc acgtgcacga agacatcctt gccgccctgg
     3241 tcgggttgga tgaagccata gcctttggtc tcgttgaacc actttacaat cccggtcggc
     3301 atacccgctt ccttctgctc acatggcgcc agcttcgagt ggctggcgca tatcgacgag
     3361 gcgtaacggc aggcgcgtgg gatcgcaagg cacatgcacg tccttgaggc cagcaaaggg
     3421 cttttgcag
//
LOCUS       DASQWN010000548         2659 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_844308, whole genome shotgun sequence.
ACCESSION   DASQWN010000548 DASQWN010000000
VERSION     DASQWN010000548.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2659)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2659)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2659
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_844308"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            83..616
                     /gene="rplF"
                     /locus_tag="VE686_10320"
     CDS             83..616
                     /gene="rplF"
                     /locus_tag="VE686_10320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015928601.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_function: GO:0019843 - rRNA binding [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L6"
                     /protein_id="HYY84877.1"
                     /translation="MSRVGKKPVAVPSGVTATVDGQLIKVKGSKGELSFVVPENVSIA
                     MEDGAVAVNPRDATKDARAKWGMSRSQVANLVEGVTKGFERKLEINGVGYRAAVAGKV
                     LKLSLGYSHDVEYAIPTGITITTPKPTEVVVAGIDKRQVGQTAAEIREFRSPEPYKGK
                     GVKYADEFIFRKEGKKK"
     gene            628..990
                     /gene="rplR"
                     /locus_tag="VE686_10325"
     CDS             628..990
                     /gene="rplR"
                     /locus_tag="VE686_10325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018044213.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L18"
                     /protein_id="HYY84878.1"
                     /translation="MAEKLGAEDRRKARVRRAIRKAANGRPRLSVFRSSKQIYAQVID
                     DERGTTLAAASSLEKDMRDKLKSGGNLDAAKEVGRLIAERASAAGVTSVVFDRSGYLY
                     HGRVKALADAAREGGLSF"
     gene            1056..1637
                     /gene="rpsE"
                     /locus_tag="VE686_10330"
     CDS             1056..1637
                     /gene="rpsE"
                     /locus_tag="VE686_10330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012330325.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000312 - plastid small ribosomal subunit
                     [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S5"
                     /protein_id="HYY84879.1"
                     /translation="MAREPSRGGRQDDRKKDGDGEFVDRLVHINRVAKVVKGGRRFGF
                     AALVVVGDQKGRVGYGHGKAREVPEAIRKATEAAKRGLIRVSLREGRTLHHDVNGRWG
                     AGKVILRSAPQGTGIIAGGPTRAVFEALGMQDVVAKSLGSSNPYNLVRATFDALKNED
                     SPRSVAARRGLKVSTLQSRRRDADPGDLAGEAA"
     gene            1649..1846
                     /gene="rpmD"
                     /locus_tag="VE686_10335"
     CDS             1649..1846
                     /gene="rpmD"
                     /locus_tag="VE686_10335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012330324.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L30"
                     /protein_id="HYY84880.1"
                     /translation="MADITVKQIGSPIRREAKQRQTLVGLGLNKINRTKTLPDTPEVR
                     GMIEKVKHLVTVVDGESGRAS"
     gene            1843..2328
                     /gene="rplO"
                     /locus_tag="VE686_10340"
     CDS             1843..2328
                     /gene="rplO"
                     /locus_tag="VE686_10340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015928605.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L15"
                     /protein_id="HYY84881.1"
                     /translation="MRLNEIRDNEGASKNRMRVGRGIGSGKGKQAGRGGKGQTARSGV
                     AIKGFEGGQMPLHRRLPKRGFNKPNRRELNEVNLGRIQEAVAAGKLGEGAPITIDTLV
                     AAGVVSKPRDGVKILGVGELTAKLSFEVYGASKSALEAIERAGGSVKILAAGDEAVAE
                     A"
     gene            2436..>2659
                     /locus_tag="VE686_10345"
     CDS             2436..>2659
                     /locus_tag="VE686_10345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011580996.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecY"
                     /protein_id="HYY84882.1"
                     /translation="MASAAEQLAANINFGAIAKAEELKKRIWFTLGALLVYRLGTYIP
                     MPGIDPEALRQSFQNASGGVLGLFNMFSGGA"
BASE COUNT          503 a          855 c          936 g          365 t
ORIGIN      
        1 gaacgtgggc ggcgaagtgc tttgcaagat cttctaagat cgactgcaaa gcaccgaacc
       61 gaaaccacgg gaggctagag agatgtctcg agtaggcaag aagccggtgg cggtaccgtc
      121 cggcgtgacg gcgaccgtcg atggtcagct tatcaaggta aaagggtcga agggcgagct
      181 gtcgttcgtc gtgcccgaga acgtgtcgat cgccatggag gacggcgccg tcgccgtgaa
      241 cccgcgcgac gcgaccaagg acgcccgggc gaagtggggc atgtcgcgct cccaggtcgc
      301 gaacctcgtc gagggagtta cgaaggggtt tgagcgcaag ctcgagatca acggcgtcgg
      361 ctatcgcgcc gctgtggccg gcaaggtcct caagctctcg cttggctaca gccacgacgt
      421 cgagtacgcg atcccgacgg gcatcacgat cacgacgccg aagccgaccg aggtcgtcgt
      481 cgccggcatc gacaagcgcc aggtggggca gaccgccgcc gagatccgcg agtttcgcag
      541 ccccgagccc tacaagggca agggcgtgaa gtacgcggac gaattcatct tccgcaagga
      601 aggcaagaag aagtaaggac cgcggctatg gctgagaaac ttggagccga agaccgccgc
      661 aaggcgcggg ttcggcgtgc gatccgtaag gcggcgaacg gccgtccgcg gctttcggtg
      721 ttccgctcgt cgaagcagat ctatgcgcag gtcatcgacg atgagcgcgg tacgacgctg
      781 gcggccgcct cgtccctcga aaaggacatg cgggacaagc tgaagagcgg cggcaacctc
      841 gacgctgcga aagaggtcgg gcgcctgatc gccgagcgcg cgagcgcagc cggcgtgacg
      901 agcgtcgtgt tcgaccgctc cggctatctc tatcacggcc gcgtcaaggc gctggccgac
      961 gccgcccgcg agggcggact gagcttctga tcggcgggtc gaccaaaaac ccattcaagc
     1021 gagcgggccg ccgcccgcgc tagtgagacg gtgatatggc aagagaacca agcaggggcg
     1081 gtcgccagga cgaccgcaag aaggacgggg acggcgaatt cgtcgaccgc ctggtccaca
     1141 tcaaccgcgt cgccaaggtg gtaaagggcg gccggcgctt cggctttgcc gccctcgtcg
     1201 tcgtcggcga ccagaagggg cgcgtcggct acggccacgg caaggcccgc gaggtgccgg
     1261 aggcgatccg caaggcgacg gaggcggcta agcgcggcct catccgcgtt tccctgcgcg
     1321 agggccgcac gctgcatcac gacgtcaacg gccgctgggg agcgggcaag gtcatcctgc
     1381 gctccgcccc gcagggcacc ggcatcattg ccggcggccc gacccgcgcc gtgttcgagg
     1441 cgctcggcat gcaggacgtc gtcgccaagt cgcttggctc gtcgaacccc tacaacctcg
     1501 tgcgggcgac cttcgacgct ctgaagaacg aagacagccc gcgctcggtc gcggcgcgtc
     1561 gcggcctcaa ggtctcgacg ctgcagtcgc gccgccgcga cgccgatccc ggcgacctcg
     1621 ccggcgaagc ggcttgagga gcgcgacaat ggctgacatc accgtgaagc agatcggctc
     1681 gccgatccgc cgcgaggcca agcagcgcca gacgctggtc ggcctcggcc tcaacaagat
     1741 caaccgcacc aagaccctgc ccgacacccc cgaggtgcgc ggcatgatcg agaaggtgaa
     1801 gcacctcgtg accgtcgtcg acggcgagtc ggggagggca tcatgagact gaacgaaatc
     1861 cgcgacaacg aaggcgcctc gaagaaccgc atgcgcgtcg gccggggcat cggctccggc
     1921 aagggcaagc aggcgggccg cggcggcaag ggccagacgg cgcgcagcgg cgtcgccatc
     1981 aagggcttcg aaggcggcca gatgccgctt caccggcggc tgccgaagcg cggcttcaac
     2041 aagccgaacc ggcgcgagct gaacgaggtg aaccttggcc gtatccagga ggcggtcgcg
     2101 gcgggcaagc tcggcgaagg cgctccgatc acaatcgaca cgctggtcgc ggcgggcgtg
     2161 gtctcgaagc cgcgcgacgg ggtcaagatc ctcggcgtcg gcgagctgac cgcgaagctg
     2221 tcgttcgagg tctacggggc gtcgaagtcg gccctcgagg cgatcgagcg ggccggcgga
     2281 tcggtcaaga tcctcgctgc cggcgacgag gccgttgcgg aagcttaagc gggcccacat
     2341 cttccgtttg acctgaagcg gcggcccgcg agcgttcgcg aggccgccgt tcgcgtgacg
     2401 gacgtcacgc ttgtaagatt tcgagggcag gacccatggc ttcagcagcc gagcaactcg
     2461 ccgcgaatat caacttcggg gccatcgcca aggccgaaga gctgaagaag cgcatctggt
     2521 ttacgctcgg cgcgctcttg gtctaccgcc tcggcaccta catcccgatg ccgggcatcg
     2581 accccgaggc tctccgccag agcttccaga atgcgtccgg aggcgtgctc gggctgttca
     2641 acatgttctc gggcggggc
//
LOCUS       DASQWN010000549         2548 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_844321, whole genome shotgun sequence.
ACCESSION   DASQWN010000549 DASQWN010000000
VERSION     DASQWN010000549.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2548)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2548)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2548
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_844321"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..225)
                     /locus_tag="VE686_10350"
     CDS             complement(<1..225)
                     /locus_tag="VE686_10350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014762986.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tripartite tricarboxylate transporter permease"
                     /protein_id="HYY84883.1"
                     /translation="MDLLANLALGFSVAVTPTNLVFCLLGALVGTLVGVLPGIGPLAT
                     ISMLLPLTYHFEPVTALIMLAGIYYGAQYGG"
     gene            complement(231..692)
                     /locus_tag="VE686_10355"
     CDS             complement(231..692)
                     /locus_tag="VE686_10355"
                     /inference="COORDINATES: protein motif:HMM:NF018979.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tripartite tricarboxylate transporter TctB
                     family protein"
                     /protein_id="HYY84884.1"
                     /translation="MKPTAPGPVWAAQHLWAGLLLSGFGIAALIFGSDLPMGTARRMG
                     PGYMPYGLAWLLILCGLVVAVRGVATARTGVERMRLRPFVGVLGGGLAFALLIGRGGI
                     LLASAGAIVGAAIADRTTRWGEVAALAVLAMGFCALVFVKLLGLNIPLWFS"
     gene            complement(743..1981)
                     /locus_tag="VE686_10360"
     CDS             complement(743..1981)
                     /locus_tag="VE686_10360"
                     /inference="COORDINATES: protein motif:HMM:NF015780.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY84885.1"
                     /translation="MSRPTNESVYQRLRVRTIVNASGPSTRLSGGIMRAEVAAAMADA
                     SQWCVDVAELQGRASEILAQVSGAEAGYVTAGASAALMLASAACLAGLDPGKMNRLPD
                     TTGMANEVVMARSQRNMYDRAVAQAGAKLVEVGIPDRFSGAGVRDAQVWEYEDALSDR
                     TAAILWVAQPHSEPGLAEIVALARRHAVPVIVDAAGQLPPVQNLQRFIAEGADLVAFS
                     GGKAIGGPQASGILIGRRDLIQSAALQQLDHDTHFDQWSPPASLFDKNELVGLPASGI
                     GRAAKCGKEEIVGLLTALELFLAEDSDQRHKLLLTICEEVADGLKDIAGITVTLADGT
                     GGRGPSVQVAVHANELGLTAREVVKRLQDGEPSVHANHSRVRDGIVVLGATCMKPGDA
                     AVVVRRVRAELGSARRRDQL"
BASE COUNT          438 a          900 c          829 g          381 t
ORIGIN      
        1 gccgccatat tgggcaccgt agtaaatgcc ggcgagcatg atcagggccg tgaccggctc
       61 gaagtggtag gtcaggggca gcagcataga gatcgtcgca agcggcccga tgccgggcag
      121 cacgccgacg agcgtcccga caagtgcgcc gagtaggcaa aacacgaggt tcgtgggcgt
      181 gaccgcgacc gaaaagccga gtgccaggtt tgcgagcagg tccatcgttg tcagctgaac
      241 cagagcggga tgttgaggcc gaggagcttg acgaagacga gggcacagaa ccccatcgcc
      301 aggactgcga gggccgcgac ctcgccccag cgagttgtgc gatccgcgat ggcagctccg
      361 acgatcgcgc ccgcggaggc cagaagaatg ccgccgcgtc caatgaggag cgcgaacgcc
      421 aagccaccgc cgagcacgcc gacgaaaggc ctgagccgca tgcgctcgac tcctgttcgc
      481 gcggtcgcga cgccacggac agccacgacg aggccgcaga ggatcagcag ccaggcgagc
      541 ccgtacggca tgtacccggg ccccattcgg cgggccgtgc ccatcgggag gtccgacccg
      601 aatatcaagg cggcgatgcc gaacccggac agaagcagcc ccgcccaaag gtgctgggcc
      661 gcccacacag gcccgggcgc cgtcggcttc actggcccct cctcaacacc ttggctggac
      721 tgtcgaacag tacgggtgct catcacaact ggtctcgcct gcgtgcggaa ccgagttccg
      781 cgcggacgcg ccgaacgacg accgctgcat cgcccggctt catgcacgtc gcgcctaaca
      841 cgacgatccc gtcgcggacg cgcgagtggt tggcgtggac cgacggctcg ccgtcctgca
      901 agcgcttgac gacttcgcgc gccgtcagcc ccagctcgtt tgcatgcacc gcgacttgca
      961 cggaagggcc ccggccaccc gtcccgtcgg cgagcgtcac cgttatgccc gcaatgtcct
     1021 tgaggccgtc cgcgacctcc tcgcagatcg tgagcaacag cttgtgcctc tggtcggagt
     1081 cctccgccag gaagagctcg agtgcggtca gcagaccgac gatctcctct ttgccgcact
     1141 tcgccgcgcg gccgatcccg cttgccggca gcccaacgag ctcattcttg tcgaacaggc
     1201 tcgccggcgg actccactgg tcgaaatgcg tgtcgtggtc gagttgctgc agcgccgccg
     1261 actggatgag atcgcgccgg cctatgagta tgccggacgc ctgcgggccg ccgatcgcct
     1321 tgccgccgga gaaggcaacc aggtcggctc cttcggcaat gaagcgctgc aggttctgca
     1381 ccggtggaag ctggcctgcg gcgtcgacga tcaccggcac ggcatgacgt cgcgcgagag
     1441 cgacgatctc tgccaaaccg ggctccgagt gcggctgcgc cacccacagg atagctgcgg
     1501 tccggtcgct caatgcatcc tcgtactccc acacctgagc gtcgcgtacg ccggcacctg
     1561 agaatcggtc cgggatgccc acctcgacca gcttcgcgcc cgcttgcgcg acggcgcggt
     1621 cgtacatgtt gcgctggctt cgggccatga cgacctcgtt cgccatcccc gtcgtgtccg
     1681 gaagcctgtt catcttgccg gggtccagcc cggccaggca cgccgccgac gcgagcatca
     1741 aggccgcgga agcgcccgct gtcacgtacc cggcctcggc cccggacacc tgggcgagga
     1801 tttcgctcgc acgcccctgc aactcagcga catcgacgca ccactgcgat gcgtcggcca
     1861 tcgctgcggc gacctcggcc cgcatgatgc cgccgctcag ccgcgtagac ggaccagacg
     1921 cgttgacgat cgtgcggacg cgcaggcgct gatagacgct ttcattggtc ggccggctca
     1981 tcgggcggcg agcgtcccgg tccgccacgc ccgagcgatg acgagcgcgc tcccgccgat
     2041 ggccatgaac agcgccccca cagcaatgtc ctgaggtgcg cgctctcggc tcacagcgag
     2101 tgtccagtcg cggccgaagt ttcgagcgat tggggcccga cgtgctcatc ggaggcaagg
     2161 ggcccacgcg acccgatgcg cacagggcta cgggccccaa ctctcaccga ggcagttccc
     2221 atgcttggcc cctctcgctc tctggcactt cgctggcgca tcatgacgaa actgctgcca
     2281 gtccgccacc ggcccgagtt tgcgccagcg ctgaacgtcc gtgaaggtca gtggctgcca
     2341 cccgctgtcc accctcaccg tccgctttgg ccggcccagg tgaagccgag gccggctcgg
     2401 cggacgaacc gaactgcgga cgcgcctacg tccgcacgcg tagcgaagac gggctaagtc
     2461 tctgacttcc cgcggtttgc caaggcgacg aagaggcggt ctctccagga aactggatgg
     2521 tggtgctacg cgtgcggacg taggcgcg
//
LOCUS       DASQWN010000550         2035 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_545458, whole genome shotgun sequence.
ACCESSION   DASQWN010000550 DASQWN010000000
VERSION     DASQWN010000550.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2035)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2035)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2035
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_545458"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            276..998
                     /locus_tag="VE686_10365"
     CDS             276..998
                     /locus_tag="VE686_10365"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY84886.1"
                     /translation="MRKLLIGALTGTVMLLIAAVAYAATVQEYDQKYSTKKPKTSAGT
                     TFTTKSIDEENTANNKQPAPVRQLDIKFPAGTKIDQRAKPFCKNFNESEEKPCPDNTL
                     IGKGNAEAIVPLEGFQTVLLDVFAYNRKGGLYVYAVPTSPPGQAPVLLRPTFKGLTLS
                     TNIPPQCIASAPDASGNCPNGEAILSKFFLKTKAFKKGKRIFIRTPKTCPKSKKWVFT
                     AKFQYGHGEPNATRKSNSPCKK"
     gene            complement(1056..1757)
                     /locus_tag="VE686_10370"
     CDS             complement(1056..1757)
                     /locus_tag="VE686_10370"
                     /inference="COORDINATES: protein motif:HMM:NF014052.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="stage II sporulation protein M"
                     /protein_id="HYY84887.1"
                     /translation="MDPDKLVLARGMRDTRATLAAWNLNPWPVLGRWAGWSLLTAVGL
                     LAAVYVVARTAQPDPTKLALPGVNVPARVGDLGHILLRNGLVLALHSMACVAGFIAGS
                     AMPQQAAQRSGLSKVVHERAGTYAIVFVVAATAFSLATQAYVLGNSLSTLSEQFGMSP
                     GLLLLGILPHAVPELTALFLPLAAWVVASRRGRWEELLAATVVTTAVAAPVLIASALV
                     ELYVSPQLIIELAGG"
     gene            1856..>2035
                     /locus_tag="VE686_10375"
     CDS             1856..>2035
                     /locus_tag="VE686_10375"
                     /inference="COORDINATES: protein motif:HMM:NF015213.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_component: GO:0033573 - high-affinity iron permease
                     complex [Evidence IEA];
                     GO_function: GO:0005381 - iron ion transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0034755 - iron ion transmembrane transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FTR1 family protein"
                     /protein_id="HYY84888.1"
                     /translation="MVGSALILLREGLEGALIIAIVLAYLAKLGRRDRFPTIWAGAGA
                     ALGISLAAGFVLFATV"
BASE COUNT          357 a          688 c          708 g          282 t
ORIGIN      
        1 gcgaagtccc agaactcgac gagcaccgcg tggcggccga gcagcttgtc gacgcgcagg
       61 aagggcgtgt tcagccattc gacgcccgcg gggatctcgg gcgccgggat ctccttgccg
      121 ggcggggctc tcacgggcga agcatggcgc atccccccgc gcaactcggg ttgccggggg
      181 gtgttggagt tctctaaggt gcgagatgtc tcgcagccct aacgcgcgcc gaggggccca
      241 tggcgcgcga agtaccccct aaaaggagag agtaagtgcg caagctactc atcggcgccc
      301 tcacgggtac cgtcatgctg ctgatcgccg cggtggcgta tgccgcgacg gttcaggagt
      361 acgaccagaa gtactcgacc aagaagccca agacctcggc gggcacgacc ttcacgacga
      421 agtcgatcga cgaggagaac acggcgaaca acaagcagcc ggcgccggtg cgtcagctcg
      481 acatcaagtt cccggccggc acgaagatcg accagagggc caagccgttc tgcaagaact
      541 tcaacgagtc cgaggagaag ccgtgcccgg acaacacgct gatcggcaag ggcaacgccg
      601 aggccatcgt cccgctcgag ggcttccaga cggtgctgct cgacgtgttc gcctacaacc
      661 gcaagggcgg cctctacgtg tacgccgtcc cgacgagccc gcccggccag gcgccggtgc
      721 tgctgcgtcc gaccttcaag ggcctgacgc tgtcgacgaa catcccgccg cagtgcatcg
      781 cctccgcgcc tgacgcgagc ggcaactgcc cgaacggcga ggcgatcctg tcgaagttct
      841 tcctgaagac gaaggccttc aagaagggca agcggatctt catccgcacc ccgaagacct
      901 gcccgaagag caagaagtgg gtcttcacgg ccaagttcca gtacggccac ggcgagccca
      961 acgcgacgcg caagtcgaac tcgccctgca agaagtaacc agccagttcg gctgacgcag
     1021 gttcgagcgg ccccgcttcg gcggggccgc tttttttatc cgccggcgag ctcgatgatg
     1081 agctgcggcg agacgtacag ctcgaccagc gcgctggcga tcaggacggg cgccgcgacc
     1141 gcggtggtca cgaccgtggc cgcgagcagt tcctcccagc gcccgcgccg gcttgcgacc
     1201 acccaggccg cgagcggcag gaacagcgcg gtcagctcgg ggacggcgtg ggggaggatg
     1261 ccgaggagga gcaggccggg cgacatgccg aactgctccg agagcgtgga gagcgagttg
     1321 cccagcacgt aggcctgcgt ggcgagcgag aacgcggtgg cggcgacgac gaacacgatc
     1381 gcgtacgtgc cggcgcgctc gtggacgacc ttgctgaggc cgctgcgctg ggccgcctgc
     1441 tggggcatgg cgctgccggc gatgaagccg gcgacgcagg ccatcgagtg cagcgcgagc
     1501 accaggccgt tgcgcaggag gatgtggccg aggtcgccga cccgcgcggg gacgttgacg
     1561 ccggggagcg cgagcttcgt cgggtcgggc tgggccgtac gcgcgacgac gtacaccgcg
     1621 gcgagcagcc cgacggcggt caggaggctc cagccggccc agcgcccgag caccggccag
     1681 gggttcagat tccaggccgc gagcgtcgcg cgggtgtcgc gcatgccgcg cgcgagtacg
     1741 agcttgtcgg ggtccaccca cctcggatcg gcaggcgcgc aaacaccctt gactcccatc
     1801 cctagtcgtg tagtaggatt cgccgcccgc cggagttagg cacccctaag acaccgtggt
     1861 cggctcagca ctcatccttc tccgcgaggg cctcgaaggc gccctcatca tcgcgatcgt
     1921 gctcgcctat ctcgcgaagc tcgggcgccg cgatcgcttc ccgacgattt gggccggcgc
     1981 cggcgccgcg ctcggcatct cgctcgccgc cggtttcgtg ctgttcgcga ccgtg
//
LOCUS       DASQWN010000551         2751 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_248397, whole genome shotgun sequence.
ACCESSION   DASQWN010000551 DASQWN010000000
VERSION     DASQWN010000551.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2751)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2751)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2751
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_248397"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(133..273)
                     /locus_tag="VE686_10380"
     CDS             complement(133..273)
                     /locus_tag="VE686_10380"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY84889.1"
                     /translation="MMGTKTVVRAVGERLGGGRPTRMRASLTAAVAGGAFAATVYKAL
                     RS"
     gene            complement(303..482)
                     /locus_tag="VE686_10385"
     CDS             complement(303..482)
                     /locus_tag="VE686_10385"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="CsbD family protein"
                     /protein_id="HYY84890.1"
                     /translation="MARSSARDKSGGTVDKLKGRLKEAGGALSGNEGRKARGQASQAK
                     GGARKKKGHLKDLFK"
     gene            complement(522..776)
                     /locus_tag="VE686_10390"
     CDS             complement(522..776)
                     /locus_tag="VE686_10390"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY84891.1"
                     /translation="MVAGLATGAAGLIGGAVLGSRLGKKPKKVLGISVPGTGGGIDGL
                     AKQVGKAGKQFKKASKQVGELTDEVRAAREKAEEIGKAFS"
     gene            835..972
                     /locus_tag="VE686_10395"
     CDS             835..972
                     /locus_tag="VE686_10395"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY84892.1"
                     /translation="MLVEALLLFAAPPLFEAVERRAELALEPFELRELFFCPADEPVF
                     A"
     gene            complement(1081..>2751)
                     /locus_tag="VE686_10400"
     CDS             complement(1081..>2751)
                     /locus_tag="VE686_10400"
                     /inference="COORDINATES: protein motif:HMM:NF015338.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease/exonuclease/phosphatase family
                     protein"
                     /protein_id="HYY84893.1"
                     /translation="CTAPDFPAGIFGASAFANLSITEIDRATVAPAGTGAIAPTVVGE
                     GGRVPPTTVIDNDTADPQTDDPPLVTGNVESKSSAPLDTANQDPTFDPSEDGIDFYES
                     LEGMLTQVNRAVVIAPTNTFSSGAANENSELAVLADNGEHAGLRTPRGGILVRSFDEE
                     LPHEYRLGDFNPERIILNDPVARDSGEAAAPDAQVRDHFAGPIEAIVDYSFGNYKFLA
                     RSFPPLEDGGLTPESAPPAGKHDLSVASYNVENLDPVNDAARIEAIARQIKDNLRSPD
                     ILGLEEVQDFDGEGPGGPAGDATFAAIVDAIADVGGPTYEYRQIDPVHNQDGGAPNAN
                     IRVGFLFRPDRVSFVDRPGGTALTATEDDPAEPGAQLTLSPGRIDPQNAVWEDSRKPL
                     AGEFVFDGRRLFVVANHFASKGGDAPLFGRFQEPYRPSELQRRGQARVVNAWVERLLE
                     ADKHARVVVLGDLNDFEFSETVNVLQRGAPGSEYELTELWQTLPEREHYSYIFEGNGQ
                     VLDHILASRALLAPRPDFAPVHMNAEFDEEQQSDHDPPLARFRVTGEK"
BASE COUNT          354 a          971 c          937 g          489 t
ORIGIN      
        1 tcggactggg cgtcgcgatc gcccccgccg acgtcccggg cttcgcggag cccggcatgc
       61 cgatgccgga cggcggcgga ggctcgggcg acggcatgca gatgatgcgc tgagcccgcc
      121 ggccagcgcg cgctagctgc ggagcgcctt gtaaacggtg gcggcgaagg cgccgcccgc
      181 gactgccgcc gtgagcgacg cgcgcatccg cgtggggcgc cctccgccaa gccgctcgcc
      241 gacggcgcgc accactgtct tcgtccccat catctgcgcc tcattcgtct cggcatccgt
      301 ttctacttga aaaggtcctt gagatggccc ttcttcttgc gggcgcctcc cttggcctgg
      361 ctcgcctgcc cccgagcctt gcgtccttcg ttgccgctga gcgcgcctcc tgcttccttg
      421 aggcgtccct tcaacttgtc gacggtgcca ccggacttgt cgcgtgcgct gctcctcgcc
      481 atcgtctcct cactccctcg tttcgtcgcg cttgaacgga cctaggagaa cgccttaccg
      541 atctcctcgg ccttctcgcg cgccgcgcgc acctcgtcgg tcagctcacc gacttgcttg
      601 cttgcctttt tgaactgctt gccggccttg ccgacctgct tcgcgagacc gtcgatgccg
      661 ccgcccgtgc ccggcaccga aatgccaagg accttcttgg gcttcttgcc aagacgtgac
      721 ccgaggacgg cgcccccgat caggccggcc gcgccggtcg cgagtcccgc gaccacggct
      781 gccttcggaa cgccaccgtt ttgctgctgg gacgaggagg agccgctcgc cgccttgctg
      841 gtcgaggcgc tcctgctctt cgccgcgccg ccgctcttcg aagcggttga acgccgcgcc
      901 gagcttgcgc ttgaaccatt cgagctccgc gagctcttct tctgcccggc ggacgaaccg
      961 gtctttgcct gaggcataac ccctccgtgg gtattcgaca tcgatgggct aacaaaatgg
     1021 ataccccgat tggaaccccc gaaacgcttg ggggtatggc tgcagcgagg cgtgctggag
     1081 ctacttctcg cccgtcaccc ggaagcgcgc gagcggcggg tcgtggtcgc tctgctgctc
     1141 ctcatcgaac tcggcgttca tgtggaccgg cgcgaagtcc ggacgtgggg ccagcagcgc
     1201 gcgcgacgcc aggatgtgat caagcacctg gccgttgccc tcgaagatgt acgagtagtg
     1261 ctcgcgctcc ggcagcgtct gccacagctc ggtgagctcg tactccgacc cgggcgcgcc
     1321 gcgctggagc acgttgacgg tctctgagaa ctcgaagtca ttgagatccc cgagcacgac
     1381 cacgcgcgcg tgcttgtcgg cctccagcag gcgctcgacc cacgcgttca cgacgcgggc
     1441 ctggccgcga cgctgaagct cgctcggccg gtagggctcc tggaagcggc cgaacagcgg
     1501 ggcgtcgccg cccttggacg cgaagtggtt cgcgaccacg aacagcctgc ggccgtcgaa
     1561 cacgaactcg cccgcgagcg gcttgcggct gtcctcccag acggcgttct gcgggtcgat
     1621 tcgacccggg ctgagcgtga gctgcgcgcc cggctcggcc gggtcgtcct cggtggcggt
     1681 cagcgcggtg ccacctgggc gatccacgaa gctcacgcga tccggccgga acaggaaccc
     1741 gacccggatg ttcgcgttcg gcgctccgcc gtcctggttg tgcaccgggt cgatctggcg
     1801 gtactcgtag gtcggtccgc cgacgtcggc gatggcgtcg acgatcgcgg cgaacgtcgc
     1861 atcgccggcg ggcccgccgg gaccctcgcc gtcgaagtcc tgcacctcct ccaggccaag
     1921 gatgtccggt gagcggaggt tgtccttgat ctggcgcgcg atggcctcga tgcgcgccgc
     1981 gtcgttgacg ggatcgaggt tctcgacgtt gtaggacgcg accgagaggt cgtgcttgcc
     2041 cgcgggcggg gcggactctg gggtgaggcc gccgtcctcg agtggcggga agctccgtgc
     2101 caggaacttg tagttgccga acgagtagtc gacgatcgcc tcgatcgggc cggcgaagtg
     2161 gtcgcgcacc tgcgcgtcgg gcgcggccgc ctcgccgctg tcgcgcgcaa ccgggtcgtt
     2221 caggatgatc cgctccgggt tgaagtcacc cagccggtac tcgtgcggca gctcctcgtc
     2281 gaacgagcgc acgaggatgc cgccgcgagg cgtgcgcagg ccggcgtgct ctccgttgtc
     2341 ggcgagcacg gccagctccg agttctcgtt ggccgcgccg gagctgaagg tgttggtcgg
     2401 cgcgatcacc acggcgcggt tgacctgcgt gagcatgccc tccagcgact cgtagaagtc
     2461 gatcccgtcc tcgctcggat cgaaggtcgg gtcctgattc gccgtgtcga gcggcgcgct
     2521 cgacttgctc tcgacgttcc ccgtcacgag cggcgggtcg tcggtctgcg ggtccgccgt
     2581 gtcgttgtcg atcacggtcg tgggcggcac ccggccgccc tcgcccacca ccgtcggcgc
     2641 gatcgcgccg gtgccggccg gcgcgacggt cgcgcggtcg atctcggtga tcgacaggtt
     2701 cgcgaacgcc gaggccccga agatgccggc tgggaagtcc ggcgcggtgc a
//
LOCUS       DASQWN010000552         4420 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_448188, whole genome shotgun sequence.
ACCESSION   DASQWN010000552 DASQWN010000000
VERSION     DASQWN010000552.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 4420)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4420)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4420
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_448188"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..707)
                     /locus_tag="VE686_10405"
     CDS             complement(<1..707)
                     /locus_tag="VE686_10405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011443525.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0015803 - branched-chain amino acid
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid ABC transporter
                     permease"
                     /protein_id="HYY84894.1"
                     /translation="MLGRRAALGRAGAALVIAAALALPFVAQTYYVQFATKVLLIGLL
                     AMALNFVVGFGGLVSLCHAAFFGLSGYVLALLAPRYEPASIWTSLPLAVGAAALAAAA
                     IGALSLRTRGVYFIMVTLAFGEMLFFLFHDTKIGGGSDGAYIYFKPAIEIAGVTLLDL
                     ERATSFYFLVLGATAAAILLLHTLTRSPFGHALAAARDNERRARSLGFPIYRIRLTAF
                     VISGALAGVAGYLAAAQ"
     gene            complement(707..1579)
                     /locus_tag="VE686_10410"
     CDS             complement(707..1579)
                     /locus_tag="VE686_10410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009734952.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0015803 - branched-chain amino acid
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid ABC transporter
                     permease"
                     /protein_id="HYY84895.1"
                     /translation="MDLPTLGVQLLNGVQYGLVLFLVASGLTLVFGILGVINLAHGAF
                     YMLGAYVAYWLAAYTGSFLAALGGGVVIAFVAGMLLETVFIRRLYGRDHLAQVLLSFG
                     LILVLDEVRDVLFGKDVHSVAAPAWLAGSIQLTDYLSYPVYRLFLCAFCLVVAVVIFA
                     VIRHTRVGMIVRAGAENRDMTRALGIPFDQVNRYVFAVGIALAALGGIVVAPISTVFP
                     GMGDQMLILSFVVVVLGGIGSVTGAAVGALLIGLTDTFGKVFFPTFSSIAIYLVMAAV
                     LVWRPNGILGRQEA"
     gene            complement(1622..2842)
                     /locus_tag="VE686_10415"
     CDS             complement(1622..2842)
                     /locus_tag="VE686_10415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011443527.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HYY84896.1"
                     /translation="MSDHKQSKLILSRRSVLTGAAGVAGASLTSHFPMPALAQAAPYK
                     VGFMLPYTGTFAKLGKFIDEGFRLYVEQKGGKLGGRAVTFLQVDDESKPESATDNMSR
                     LVGREKVDVVVGTVHSGVAMAMAKVARDTNTMLVIPNAGANEATGPLCAPHIFRTSFS
                     NWQTSFPMGKVVADAGHKNVVTISWRYAAGQQMVEAFKEGFGKAGSGGKIVEELYLPF
                     PEVEFQALLTRIASLKPDAVFSFFAGGGAVKFVKDYAAAGLKDKIPLYGSGFLTDGTI
                     EAQGEAANGIKTTLHYADNLDNPANKAFSEAFKKKSGQDADVYAVQGFDSATLLDIGL
                     MAAGGDAAARDKMVAAMAGAKINSPRGPISFSKAHNVVQNFYLREVRNGRNEFISVAH
                     ADLADPAPGCRMTS"
     gene            complement(3008..3925)
                     /locus_tag="VE686_10420"
     CDS             complement(3008..3925)
                     /locus_tag="VE686_10420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012318022.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrodipicolinate synthase family protein"
                     /protein_id="HYY84897.1"
                     /translation="MLGSKRKGAMMLTGLSAFPITPSDAAGRVDAAALRDLLAPLLAA
                     RVDSIGLLGSTGTYAYLAREERRRTVEAAVEMAGGRTPILVGIGALRTDEAVRLAQDA
                     KASGASAGLLAPVSYTPLTDDEVFKHFATVAGESGLPLCIYDNPSTTHFKVGPALVGR
                     VSRIPGVVGLKTSAPDAPQVAGHLAELRAVSPAGFQIGYSADWNVVEGLLAGADAWYS
                     VVAGLFPEICMAMVRAARSGDAAQARSLNAQLQPLWDVFKAHSSLRVMYAVAKLRGLT
                     RADPPRPLLPLPKPAEEKVAEALRAAKLT"
     gene            complement(3980..>4420)
                     /locus_tag="VE686_10425"
     CDS             complement(3980..>4420)
                     /locus_tag="VE686_10425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018854786.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uracil-DNA glycosylase family protein"
                     /protein_id="HYY84898.1"
                     /translation="DDRSGERLRDWMGVSREEFYDASRVAILPMGFCFPGYDAHGSDL
                     PPRRECAALWRSRFVLALPDIELILCIGAFAQGWHLGAARGPSMTATVADWRRFLGSN
                     AGPRIMPLPHPSWRNTGWIRRHPWFEAELLPALRMEVARTLRRP"
BASE COUNT          730 a         1457 c         1609 g          624 t
ORIGIN      
        1 tattgcgcgg ccgcgagata gccggcgacg cccgcgagcg cgcccgagat gacgaaggcc
       61 gtgaggcgga tgcggtagat cgggaacccg agcgaccgcg cgcggcgctc gttgtcgcgc
      121 gccgccgcga gcgcgtggcc gaagggggac cgggtcaggg tgtgcaagag caggatcgcg
      181 gcggcggtgg cgccgaggac caggaagtag aagctcgtcg cgcgctcgag gtcgaggagg
      241 gtcacgccgg cgatctcgat cgccggcttg aaatagatgt aggcgccgtc cgacccgccg
      301 ccgatcttgg tgtcatggaa gaggaagaag agcatctcgc cgaaagcgag agtgaccatg
      361 atgaagtaga cgccgcgcgt gcgaaggctc agcgcgccga tggcggcggc ggcgagcgcc
      421 gcggcgccga cggcaagcgg caggcttgtc cagatcgacg ccggctcgta gcgcggcgcg
      481 agcagcgcga ggacgtagcc tgacaagccg aagaacgccg cgtgacagag gctcacgagc
      541 ccaccgaagc cgaccacgaa gttgagcgcc atggcgagga gcccgatcag gagcaccttg
      601 gtggcgaact gcacgtaata ggtctgcgcc acgaacggca gcgcgagcgc ggccgcgatg
      661 acgagcgccg cgccggcgcg gcccagcgct gcgcgtcgcc ccagcatcag gcctcctgcc
      721 ggccgaggat cccgttcggc ctccacacca ggacggcggc catgacgagg tagatcgcga
      781 tgctggagaa ggtcgggaag aagactttgc cgaaggtgtc ggtgaggccg atcaggaggg
      841 cgccgacggc cgcgcccgta accgagccaa tgccgccgag caccacgacg acgaaggaga
      901 ggatgagcat ctggtcgccc attccgggaa acaccgtcga gatcggcgcg accacgatgc
      961 cgccgagggc cgccagggcg atcccgacgg cgaagacgta gcggttgacc tggtcgaagg
     1021 ggatgccgag cgcccgcgtc atgtcgcggt tctcggcccc cgcgcgcacg atcatgccga
     1081 cgcgcgtgtg gcggatgacg gcgaagatga cgacggcaac gacgaggcag aacgcgcata
     1141 ggaacagccg gtagaccgga taggacaggt agtcggtcag ctggatcgac cccgcgagcc
     1201 aggctggcgc cgcgaccgag tgcacgtcct tgccgaacag cacgtcgcgc acctcgtcga
     1261 gcaccaggat cagcccgaag ctcaagagca cctgggcgag gtggtcgcgc ccgtagagcc
     1321 gccggatgaa cacggtctcg agcagcatcc cggcgacgaa ggcgatcacc accccgccgc
     1381 cgagggcggc gaggaagctc cccgtatagg cggcaagcca gtacgccacg taggcgccca
     1441 gcatgtagaa ggccccatgc gccaggttga tgacgccgag gatgccgaac accagggtca
     1501 gcccgctcgc caccaggaag agcacgaggc cgtactgcac gccgttcaga agctgcacgc
     1561 cgagcgtcgg aagatccatc tctgtccgtc gaacctccga ccgctcaggc gggcgcctcc
     1621 gtcaggaggt catgcggcag cctggagccg gatcggcgag atcggcgtgg gcgacggaga
     1681 tgaactcgtt gcgcccgttg cgcacctcgc gcaggtagaa gttctgcacg acgttgtggg
     1741 ccttcgagaa gctgatcggc ccgcgcggcg agttgatctt cgcgcccgcc atggcggcga
     1801 ccatcttgtc ccgcgccgcg gcgtcgccgc ccgcggccat gaggccgatg tcgaggaggg
     1861 tcgccgagtc gaagccctgc acggcgtaga cgtcggcgtc ctggccggac ttcttcttga
     1921 acgcctccga gaaggccttg ttggccgggt tgtcgaggtt gtcggcgtag tggagcgtcg
     1981 tcttgatgcc gttcgcggcc tcgccctgcg cctcgattgt gccgtcggtc aggaacccgg
     2041 agccgtagag cgggatcttg tccttcagcc ctgccgctgc gtagtccttc acgaacttca
     2101 cggcgccgcc gccggcgaag aaggagaaca ccgcgtcggg cttcaggctc gcgatgcgcg
     2161 tgaggagggc ctggaactca acttcgggga agggcagata gagctcctcg acgatcttgc
     2221 cgccgctgcc cgccttgccg aagccctcct tgaacgcctc gaccatctgc tggccggccg
     2281 cgtagcgcca gctgatggtc acgacgttct tgtgccccgc gtcggcgacg accttgccca
     2341 tcgggaacga ggtctgccag ttcgagaacg aggtgcggaa gatgtgcggt gcgcacaacg
     2401 ggccggtggc ctcgttggcg ccggcgttcg ggatcaccag catggtgttg gtgtcgcgcg
     2461 cgaccttcgc catcgccatg gcgacgcccg agtgcacggt gccgaccacc acgtcgacct
     2521 tctcgcggcc gacgaggcgg ctcatgttgt cggtcgcgct ctcgggcttc gactcgtcgt
     2581 cgacctgcag gaacgtgacc gcgcggccgc cgagcttgcc gcccttctgc tcgacgtaga
     2641 gccggaagcc ctcgtcgatg aacttgccga gcttcgcgaa ggtgcccgtg tagggcagca
     2701 tgaagccgac cttgtagggc gccgcctgcg ccagcgccgg catgggaaaa tgcgaggtga
     2761 ggctcgcccc tgcgaccccg gccgcgccag taagcaccga cctgcggctc aggatgagct
     2821 tcgactgctt gtggtcgctc atggcgttcc tccctgaagg ctgtcccggc cgattatgtc
     2881 gccgtggcgc ggcatgcctg aggcatgccg tcccggcgtc ggctcgggcg tatcatgcat
     2941 gatagtgccg cgtttcgcgc ctttgcaaca gaaccatagt tcaggagccc gtcatcgccg
     3001 ggccgcctca ggtcagcttg gcggcgcgca acgcctcggc cactttctcc tcagcgggtt
     3061 tcggcagcgg caggagcggg cgaggcgggt cggcgcgggt caggccgcgc agcttggcga
     3121 cggcatacat cacgcgcagg ctggaatggg ccttgaagac gtcccagagc ggctggagct
     3181 gggcgttgag ggatcgcgct tgcgccgcgt ccccgctgcg cgcggcgcgc accatggcca
     3241 tgcagatttc cgggaacagg ccggcgacga cgctgtacca ggcatcagcg ccggccagca
     3301 gcccttccac gacgttccag tcggcgctgt agccgatctg gaagcccgcg ggcgagacgg
     3361 cccgcagctc ggcgaggtgc ccggcaacct gtggcgcgtc gggcgcggag gtcttgagcc
     3421 cgacgacacc gggaatgcgg ctgacgcgtc cgacgagggc ggggccgacc ttgaagtgcg
     3481 tcgtgctcgg gttgtcgtag atgcacaagg gcagcccgct ctcgccggcg accgtggcga
     3541 agtgtttgaa aacctcgtcg tcggtgagcg gggtgtagga caccggcgcc agcaagcccg
     3601 ccgaggctcc cgaggccttg gcgtcctgcg ccaggcgcac ggcttcgtcg gtgcgcaggg
     3661 cgccgatgcc gacgaggatg ggggttcgcc ctcccgccat ctcgacggct gcctcgacgg
     3721 tgcggcggcg ctcctcgcgc gcgagatacg cgtaggtgcc ggtgctgccg aggaggccga
     3781 tggagtcgac ccgcgcggcg agcaagggcg cgagcaggtc gcgcagcgca gccgcgtcga
     3841 cccggccggc agcgtcggac ggggtgatcg ggaaggccga aagtccggtc agcatcatgg
     3901 cacccttgcg cttcgagccg agcatacgcc tcggccctcc gccgcgaaac gtcgtccgtg
     3961 acctaagcgc aagtgtaggt catggtcgcc gcaaggtgcg ggcgacctcc atccgcaggg
     4021 cgggcagcag ctcggcctcg aaccacgggt ggcggcggat ccagccggtg ttgcgccagg
     4081 acgggtgggg caggggcatg atgcgcggcc cggcattgct gccgaggaag cgccgccaat
     4141 ccgcgaccgt cgccgtcatg ctggggcccc gcgccgcgcc gaggtgccag ccttgcgcga
     4201 acgcgccgat gcacaggatc agctcgatgt ccggcagggc gaggacgaag cggctgcgcc
     4261 acagggcggc gcattcgcgc cggggcggca ggtcgctgcc gtgcgcgtcg tagcccggaa
     4321 agcagaagcc catgggcagg atggcgacgc ggctcgcgtc gtagaactct tcgcggctca
     4381 cccccatcca gtcgcgcagg cgctcgccgc tgcggtcgtc
//
LOCUS       DASQWN010000553         3848 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_448807, whole genome shotgun sequence.
ACCESSION   DASQWN010000553 DASQWN010000000
VERSION     DASQWN010000553.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 3848)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3848)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3848
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_448807"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1280
                     /locus_tag="VE686_10430"
     CDS             <1..1280
                     /locus_tag="VE686_10430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012332237.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase"
                     /protein_id="HYY84899.1"
                     /translation="GSDLAAIRSRAEPAGDGTYRITGQKIFITYGEHDLTDNIVHLVL
                     ARLPDAPPGTRGISLFLVPKILPDGTRNDVRCHSIEEKLGIHASPTCTMVFGDNGGAT
                     GFLVGQENRGLNCMFTMMNNARLAVGLQGVAVAERATQQALAYAKERRQGRSVRGGAD
                     SMAPIVEHPDVKRMLMTMKGLTAAARAICYMTAAAIDRAHLSGDEAVRKIANERASLL
                     TPVAKAFSTDIANEVASIGVQVHGGMGFVEETGAAQHLRDARILPIYEGTNGIQAIDL
                     VIRKLPLSGGDTVRRQIASMRAVAVDLVKDASPAFGLSAPRLREAVDSLDRATSFMLK
                     ALAGNRQEDALAGATPYLRLFGLAQGGAALARAALAANAAVKAGATDPAHAARVVLCR
                     FFAENLVPACRGLEEAVVSGASFVEDAELALAS"
     gene            1294..2052
                     /locus_tag="VE686_10435"
     CDS             1294..2052
                     /locus_tag="VE686_10435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012320761.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-CoA hydratase-related protein"
                     /protein_id="HYY84900.1"
                     /translation="MTEHVSVTREGEVVLVRLNRPDKKNAMTGAMYGALVETFDAADR
                     DAAGAIVITGSGGSFMAGNDIADFLARAERPDDIAAFSFIKRLATLQTPLVAAVEGVA
                     VGIGTTLLLHCDLVYAAPTAVFRTPFVDLGLVPEAASTLLLPQRVGLAKASELLMLGE
                     PFDAAEALRLGLVSAIVPAESLVEHALERARKLAAKPREAIMATRRLIRGDRTEVLAA
                     MDREGAEFSKALRSPAAKAAFSAFLSKAKAPAAS"
     gene            2082..2894
                     /locus_tag="VE686_10440"
     CDS             2082..2894
                     /locus_tag="VE686_10440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019904835.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HYY84901.1"
                     /translation="MVAGASRGVGRGVARALGEAGATVVVTGRSVEAGPRTDGRSEVI
                     EDTAREVELAGGRGYPYQCDHTSEREVDALVQWTLRRFGRIDVAVSSVWGGNEGYDGE
                     RYADGSRFGTPFWRRPAAQLGRFMESGVYAALLLARAVAPPMVSSRAGLIALVSFGTE
                     DGYLGDLHYDLAKSSLNRLAFACAAELKPHGVAAVAVSPGSVRTERVRDAGLAEDATE
                     SPLYAGRAIAALAADPDVMRHSGGTLFAADLARAYGFTDADGAQPPRFTPPT"
     gene            2917..>3848
                     /gene="lpxD"
                     /locus_tag="VE686_10445"
     CDS             2917..>3848
                     /gene="lpxD"
                     /locus_tag="VE686_10445"
                     /EC_number="2.3.1.191"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009491148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016410 - N-acyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0009245 - lipid A biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-3-O-(3-hydroxymyristoyl)glucosamine
                     N-acyltransferase"
                     /protein_id="HYY84902.1"
                     /translation="MTSGSVLQASVTLSLADVAAIAQADLPGGADPTAVVRGAAPLED
                     AGPEDVAYVESGKYAEALAHTRAGVCLVPARFRDAVPAGAVALVCKQPHLAFARVMTR
                     LYPEAARPSSSFAEGSISPHALVHPTAQIADGVMVDPGAIVGPGAQIGAGSRIGAYSV
                     VGPEVRIGRDCALAAQVNVIHAVLGDRVVLHPGVRIGQDGFGFVMTPQGHTKVPQLGR
                     VIIGDDVEIGANCTIDRGSSRDTIIGEGTKMDNMVHVAHNVVIGKHCVLVAQVGIAGS
                     TVLEDFVAVGGQTAIAPHLRLGAGVQIAADAGVMT"
BASE COUNT          554 a         1365 c         1358 g          571 t
ORIGIN      
        1 cgggttccga tctcgcggcg atccgctccc gggccgagcc tgcgggcgac ggcacctatc
       61 ggatcacggg ccagaagatc ttcatcacct acggcgagca cgatctcacg gataacattg
      121 tccacctcgt gctcgctcgc ctgccggacg cgcctccagg aacgcggggg atatcgctct
      181 tcctcgtgcc caagatcctg cccgacggca cgcgcaacga cgtccgctgc cactcgatcg
      241 aggagaagct cggcatccac gcctcgccga cgtgcacaat ggtcttcggc gacaacggcg
      301 gcgcgaccgg attcctcgtc ggccaggaga accgcggcct caactgcatg ttcacgatga
      361 tgaacaacgc tcgcctcgcc gtgggcctgc aaggggtcgc cgtcgcggag cgcgccacgc
      421 agcaggcgct cgcctacgcc aaggagcggc gccaaggccg ctcggtgcgc ggcggcgccg
      481 acagcatggc gccgatcgtc gagcatcccg acgtgaagcg catgctgatg accatgaagg
      541 gcctcacggc tgcggcgcga gcgatctgct acatgacggc cgccgccatc gacagggcgc
      601 acctgtcggg tgacgaggcc gtgcgcaaga tcgcgaatga gcgcgcctcg ctgctgaccc
      661 ccgtggccaa ggctttctcg accgacatcg ccaacgaggt cgcctcgatc ggggtgcagg
      721 tgcacggcgg catgggcttc gttgaggaga ccggcgcggc gcaacacctg cgcgacgccc
      781 ggatactgcc aatctacgag ggcaccaacg gtatccaggc catcgacctc gtcatacgca
      841 agctgccttt gtcgggcggc gacaccgtgc gccgccagat cgcctcgatg cgcgccgtcg
      901 cggtcgacct cgtgaaggat gcgagccccg ccttcggcct ctccgccccg cggctgcggg
      961 aggcggtcga cagcctcgat cgcgcgacga gcttcatgct caaggcgctg gccggcaacc
     1021 ggcaggagga cgcgcttgcg ggcgcgacgc cgtacctgcg gctcttcggc ctcgcgcagg
     1081 gaggggcggc gctggcgaga gcggcgctcg cggcgaatgc tgccgtgaaa gccggcgcga
     1141 ccgatccggc ccatgctgct cgcgtggtgc tgtgccggtt cttcgccgag aacctcgtgc
     1201 cagcgtgccg agggcttgag gaggctgtcg tgtcgggcgc cagctttgtc gaggatgccg
     1261 agctcgccct cgcgagctga cccggagaca gcaatgaccg agcacgtgag cgtcacgcga
     1321 gagggggagg tcgtgctcgt ccgactcaac cggccggaca agaagaatgc catgacgggc
     1381 gccatgtacg gcgcactcgt cgagaccttc gacgcggcgg accgggacgc cgccggcgcc
     1441 atcgtgatca cgggctcggg cggctctttc atggccggca acgacatcgc cgatttcctc
     1501 gcccgcgccg agcggcccga cgacatcgcc gcgttcagct tcatcaagag gctcgcgacc
     1561 ttgcagacgc cgctcgtcgc cgccgtcgaa ggtgtcgcgg tcgggatcgg cacgacgctg
     1621 ctcctccact gcgacctcgt gtatgccgcg ccgacggctg tgttccgcac gcccttcgtg
     1681 gacctcggcc tcgtgcccga ggcggcctcc acgctcctgc tcccgcagcg cgtcggcctc
     1741 gccaaggcga gcgagcttct catgctcggc gaacccttcg acgcggcaga agcgctccgg
     1801 ctcggcctcg tcagcgcgat cgtgccggcc gaaagcctcg tcgagcacgc cctcgagcga
     1861 gcccgaaagc tcgccgcaaa gccccgcgag gccattatgg ccacgcgccg cctcatccgc
     1921 ggtgaccgga ccgaggtcct cgctgcgatg gaccgggaag gcgccgagtt ctcgaaggcc
     1981 ctgcgctcgc cggctgcgaa ggcggcgttc agcgccttcc tctcgaaagc gaaggctccg
     2041 gccgcctcgt gagcgcgggt gcgcttgccg acaaggtttg cgtggtagcc ggcgcctccc
     2101 gcggcgtcgg gcgcggcgtc gcccgcgccc ttggcgaggc aggtgcaacg gtcgtggtca
     2161 cgggccggtc ggtcgaggca gggccgcgca ccgacgggcg ctccgaggtc atcgaggaca
     2221 cggcccgcga ggtcgagctc gccggggggc gcggctaccc ctaccagtgt gaccatacga
     2281 gcgagcgcga agtcgacgcg ctggttcaat ggacgctgcg ccgcttcggc cgcatcgacg
     2341 tcgcggtctc gagcgtctgg ggcggaaatg agggttacga cggcgagcgc tacgccgacg
     2401 gctcgcgctt cgggacgccg ttctggcgcc gccccgccgc gcagcttggg cgtttcatgg
     2461 agagcggcgt ctacgcagcc ctgctgctcg cccgcgccgt cgcgccgccc atggtgtcgt
     2521 ctcgggcggg cctgatcgcc ttggtgtcgt tcggaacgga ggacggctat ctcggcgacc
     2581 tccactacga ccttgccaag agctcgctca accgactcgc gttcgcgtgc gccgcggagc
     2641 tcaagccgca cggcgtcgcg gccgtcgcgg tctcgcccgg gtccgtgcgg acggaacggg
     2701 tgcgcgacgc cggcctcgcc gaagatgcga ccgagagccc gctctacgcc ggcagggcga
     2761 tcgcggcgct cgcggccgac ccggacgtga tgcgccatag cggcggcacg ctgtttgccg
     2821 ccgatctggc ccgggcgtat ggcttcaccg acgcggatgg cgcgcaaccg ccgcgcttca
     2881 cgcccccgac ctgacggggc cgcgaggagg tgagatgtga cgagtggaag tgtccttcaa
     2941 gcctcggtga cactgtcgct cgccgatgtc gcggcgattg cgcaggccga tctccccggc
     3001 ggcgccgatc cgactgcggt cgtgcgcggc gcggcgccgt tggaggacgc cggaccggag
     3061 gatgtcgcct atgtcgagag cgggaagtat gcggaggccc tggcgcacac ccgcgcaggt
     3121 gtctgcctcg tgcccgcgcg ctttcgcgac gcggtgccgg caggtgcggt cgcgcttgtg
     3181 tgcaagcagc cgcaccttgc cttcgcgcgg gtgatgacgc ggttgtatcc cgaggcggcc
     3241 cggccgtcct cgagcttcgc tgagggcagc atctccccgc acgccctcgt ccacccgacc
     3301 gcgcagatcg ccgacggcgt gatggtcgac cccggcgcca tcgtcgggcc gggcgcacag
     3361 atcggtgccg gttcccgcat cggtgcctat tcggtcgtcg gccccgaggt gcgcatcggg
     3421 cgggattgcg cgctggccgc acaggtgaac gtgatccacg cggtgctcgg cgaccgcgtg
     3481 gttctgcatc cgggcgtgcg catcgggcag gacggcttcg gcttcgtgat gaccccgcag
     3541 ggccacacca aggtgcccca gctcgggcgc gtgatcatcg gtgacgacgt ggagatcggc
     3601 gccaactgca ccatcgaccg cggcagcagc cgcgacacga tcatcggcga gggcaccaag
     3661 atggacaaca tggtgcacgt cgcccacaac gtggtgatcg gcaagcactg cgtgcttgtc
     3721 gcgcaggtcg ggatcgcggg ctcgaccgtc ctcgaggact tcgtcgccgt cggcgggcag
     3781 acggcgatcg ccccgcacct gcgcctcggg gcgggcgtgc agatcgccgc cgacgccggc
     3841 gtgatgac
//
LOCUS       DASQWN010000554         3359 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_946042, whole genome shotgun sequence.
ACCESSION   DASQWN010000554 DASQWN010000000
VERSION     DASQWN010000554.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 3359)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3359)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3359
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_946042"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..701
                     /locus_tag="VE686_10450"
     CDS             <1..701
                     /locus_tag="VE686_10450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018648452.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0042597 - periplasmic space [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="tripartite tricarboxylate transporter substrate
                     binding protein"
                     /protein_id="HYY84903.1"
                     /translation="LSSLAVLPEADRLFGRTPGYEVSQLAPVARVLADPTLLAVPASA
                     PWRSVQDLVDDARKRPGEIPYGSSGPYGTLHVAMEMFANAAGIKLLHVPYRGAGPAVT
                     GLLSGQIQALASAPGVLKPHVDGGAMRVLANWGPTRIDSFPDLPTFKELGYAEVEFLI
                     WAGLFAPRGLPEPVMAKLREAMRQAMANPEVVRVFENAGSPPAYLDAPDFEKFVQADS
                     ARLIEAVRKIGKVE"
     gene            1178..1747
                     /locus_tag="VE686_10455"
     CDS             1178..1747
                     /locus_tag="VE686_10455"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015933678.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0046933 - proton-transporting ATP synthase
                     activity, rotational mechanism [Evidence IEA];
                     GO_process: GO:0015986 - proton motive force-driven ATP
                     synthesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit delta"
                     /protein_id="HYY84904.1"
                     /translation="MAENGSQTGMISGVAGRYASALFDLARDENAMDAIGTELERFDA
                     LVRESPDLQRLLRSPAFTEDEQKNAVGAILDRAGISGLGATFIRLVAAKRRLFALPDM
                     IRAYRQLVADAKGIVRAQVTVAERPSDRVVDDIKAALKDAARAEIDLDLRVDPALIGG
                     LVVKMGSRMLDASLRTKLNSIRLAMKEVR"
     gene            1748..3277
                     /gene="atpA"
                     /locus_tag="VE686_10460"
     CDS             1748..3277
                     /gene="atpA"
                     /locus_tag="VE686_10460"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012561767.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000275 - mitochondrial
                     proton-transporting ATP synthase complex, catalytic sector
                     F(1) [Evidence IEA];
                     GO_component: GO:0045261 - proton-transporting ATP
                     synthase complex, catalytic core F(1) [Evidence IEA];
                     GO_component: GO:0045262 - plasma membrane
                     proton-transporting ATP synthase complex, catalytic core
                     F(1) [Evidence IEA];
                     GO_function: GO:0046933 - proton-transporting ATP synthase
                     activity, rotational mechanism [Evidence IEA];
                     GO_process: GO:0015986 - proton motive force-driven ATP
                     synthesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit alpha"
                     /protein_id="HYY84905.1"
                     /translation="MDIRAAEISAILKEQIKNFGSEAEVTEVGQVLSVGDGIARCYGL
                     DNVQAGEMVEFESGVRGMALNLESDNVGIVIFGSDRDIAEGQTVKRTGAIVDVPVGKG
                     LLGRVVDALGNPIDGKGPIASSERRRVDVKAPGIIPRKSVHEPMATGLKAVDALIPIG
                     RGQRELIIGDRQTGKSAITLDTILNQKPLNQQPDESLKLYCVYVAIGQKRSTVAQFVK
                     TLEENGALEYSIIVAATASDPAPMQFLAPFSGCAMGEFFRDNGMHAVIIYDDLSKQAV
                     AYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLNEGSGSGSLTALPVIETQANDV
                     SAYIPTNVISITDGQIFLETDLFYQGIRPAVNVGLSVSRVGSAAQTKAMKKVAGRIKG
                     ELAQYREMAAFAQFGSDLDAVTQRLLNRGARLTELLKQPQFSPLKMEEQVVAIYAGVN
                     GYLDPLPVNRVRAFEEGLLGHVRGRHPDILENIRTSRDLSDDNGAKLKSAVESFAKSF
                     A"
BASE COUNT          523 a         1216 c         1107 g          513 t
ORIGIN      
        1 ccctgtcgtc cctcgccgtg ctgccggagg ccgaccggct gttcggacgc acacccggct
       61 atgaagtcag ccagctcgcc ccggtcgccc gcgtcctcgc cgatccgacg ctgctcgccg
      121 ttccggcgtc cgcgccctgg cgcagcgtgc aggacctcgt cgacgacgcc cgcaagcgcc
      181 ccggcgaaat cccctacggc tcctcaggcc cctacggaac gctgcacgtc gcgatggaga
      241 tgttcgccaa cgcggcgggg atcaagctcc ttcacgtgcc ctatcgcggg gcgggaccgg
      301 ccgtgaccgg gctgctctcg ggacaaatcc aggcgctcgc gtctgcgccc ggcgtgctca
      361 agccccacgt ggatggcggc gccatgcggg tgctggcgaa ctggggtccg acccgcatcg
      421 acagcttccc cgacctgccg accttcaagg agctcggcta cgccgaggtg gagttcctga
      481 tctgggccgg cctgtttgcc ccgcggggct tacccgagcc ggtcatggcg aagctgcgcg
      541 aggcgatgcg ccaagcgatg gcgaaccccg aggtcgtgcg cgtcttcgaa aatgcgggaa
      601 gcccgcccgc ctatctcgac gcgccggact tcgagaagtt cgtgcaggcc gacagcgccc
      661 gtctgatcga ggcggtccgg aagatcggga aggtggaatg atcgtgcggc cttgccagag
      721 agcacggagc aggagggctg cgctccgttc caggcgtccg ggaaagggct cgctggagca
      781 taacgccatc ctgggtccga tcctgctcta gtgcggcgcc ggcctgccgt tctgcgaccg
      841 ggggccgagg atacggccgc gcctagccgg catcttccgg aatgccggca tcttcccgga
      901 ttgctccgga tttgagccgg catcttccgc cggttcccga gggcgcattc cggcatcgtc
      961 cgcctcgcgc gggtgctcgg aggatgccgg cgtgcacggc ccggcgtcca ggcccgtcgg
     1021 cctgcgcctt cgccttgcgc accccaatcc accatgctag tgcacgcccg cctttggggc
     1081 gggccttcgt cccccattgc gcgcattccc ttgcctgacg cggcgtgccg ccccctccgg
     1141 gcgtgctccg agcccgtgag acctgagaga gaagccggtg gctgaaaacg gttcgcagac
     1201 cggaatgata tcgggcgtcg ccgggcgcta cgcctccgcc ctgttcgacc tcgcgcgcga
     1261 cgagaacgcg atggacgcga tcgggaccga gctcgagcgg ttcgacgcgc tcgtgcgcga
     1321 gagcccggat ctgcagcgcc tcctgcgcag cccggccttc acggaagacg agcagaagaa
     1381 cgccgtcggg gcgatcctcg accgcgccgg catctcgggg ctcggggcga ccttcatccg
     1441 cctcgtcgcc gccaagcggc gcctgttcgc cctgccggac atgatccgcg cctaccgcca
     1501 gctcgtcgcc gacgccaagg gcatcgtgcg ggcccaggtg acggtcgccg agcgcccctc
     1561 cgaccgcgtc gtcgacgaca tcaaggccgc cctcaaggac gccgcccggg ccgagatcga
     1621 cctcgacctg cgcgtcgacc cggcgctcat cggcggcctc gtggttaaga tgggctcgcg
     1681 catgctcgac gccagcctcc gcaccaagct caactccatc cgccttgcca tgaaagaggt
     1741 ccgataaatg gacatccgcg ctgctgaaat ctccgcgatc ctcaaggagc agatcaagaa
     1801 cttcggctcc gaggccgagg tcaccgaggt cggccaggtt ctctcggtcg gcgacggcat
     1861 cgcccgctgc tacggcctcg acaacgtcca ggccggcgag atggtcgagt tcgagtcggg
     1921 cgtgcgcggc atggcgctca acctcgagag cgacaacgtc ggcatcgtga tcttcggctc
     1981 cgaccgcgac atcgcggaag gccagacggt gaagcgcacc ggcgcgatcg tggacgtgcc
     2041 ggtcggcaag gggctgctcg gccgcgtcgt cgacgcccta ggcaatccca tcgacggcaa
     2101 gggcccgatc gcctcgtccg agcgccgccg ggtcgacgtg aaggcgcccg gcatcattcc
     2161 tcggaaatcc gtgcacgagc cgatggcgac gggcctcaag gccgtcgacg cgctgatccc
     2221 gatcggccgc ggccagcgcg agctcatcat cggcgaccgc cagactggca agtcggcgat
     2281 cacgctcgac accatcctga accagaagcc gctgaaccag cagcccgacg agagcctcaa
     2341 gctctactgc gtctacgtcg ccatcggcca gaagcgctcg acggtcgcgc agttcgtgaa
     2401 gacgctcgag gagaacggcg ccctcgagta ctcgatcatc gtcgcggcga cggcatcgga
     2461 cccggccccg atgcagttcc tggcgccctt ctcgggctgc gccatgggcg agttcttccg
     2521 cgacaacggc atgcatgccg tgatcatcta cgacgacctc tcgaagcagg ccgtcgccta
     2581 ccgccagatg tcgctgctgc tgcgccgccc gccgggccgc gaggcgtacc cgggcgacgt
     2641 gttctacctc cactcgcggc tgctcgagcg cgccgcgaag ctcaacgagg gcagcggctc
     2701 gggctcgctg acggcgcttc cggtcatcga gacgcaggcg aacgacgtct cggcctatat
     2761 cccgaccaac gtgatctcga tcaccgacgg ccagatcttc ctcgagaccg atctgttcta
     2821 tcagggcatc cgcccggccg tgaacgtcgg cctttcggtg tcgcgcgtcg gctccgcggc
     2881 ccagacgaag gcgatgaaga aggtcgccgg gcgcatcaag ggcgagctcg cgcagtaccg
     2941 cgagatggcg gcgttcgcgc agttcggctc ggacctcgac gcggtcacgc agcgcctcct
     3001 caaccgcggc gcgcgcctga ccgagctcct caagcagccg cagttctcgc cgctgaagat
     3061 ggaggagcag gtcgtcgcga tctacgccgg cgtcaacggc tacctcgacc cgctgccggt
     3121 caaccgcgtg cgcgccttcg aggagggcct cctgggccat gtgcgcggcc gtcatccgga
     3181 tatcctcgag aacatccgca cctcgcgcga cctctcggac gacaacggcg ccaagctgaa
     3241 gagcgccgtc gagtccttcg ccaagtcgtt cgcgtgatgt cgttgcaggt tgtgacaagc
     3301 gccgcgcaaa gcccctcgcc ccttgtgggg gaggccgagt cgcgccggag gcgcgaccg
//
LOCUS       DASQWN010000555         2981 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_449540, whole genome shotgun sequence.
ACCESSION   DASQWN010000555 DASQWN010000000
VERSION     DASQWN010000555.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2981)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2981)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2981
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_449540"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..577
                     /locus_tag="VE686_10465"
     CDS             <1..577
                     /locus_tag="VE686_10465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003604387.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="LptF/LptG family permease"
                     /protein_id="HYY84906.1"
                     /translation="VENTATLAGVTVFAFDETGTFRERVEAAEAVLRDGYWELKDARV
                     LTEDEEPQSYGTYLIASNLAPGQVRQSFTPPEAVPFWKLDDTIAQTERAGLDATRYRL
                     QYDVLLARPLLFVAMVLVAASVSLRFFRFGGVARMVLGGVAAGFLLYVATRLMEDLGG
                     SGLVSPVVAAWFPGVVGSLLGTLALLYQEDG"
     gene            613..>2981
                     /locus_tag="VE686_10470"
     CDS             613..>2981
                     /locus_tag="VE686_10470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009764373.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPS-assembly protein LptD"
                     /protein_id="HYY84907.1"
                     /translation="MGRVQGSVAGAAIATALMCSVASAPASAQTMNDALSSRMQNDGN
                     ARLLAEAKELIYDNERNVVTASGNAELHYQGRTLQADRVVYDRNSGRVFAEGNARLTE
                     ANGAVITGDRFELTDDFKNGFIDSLRLTQTMKDRSGLVTARFSAPRAERIEGESMVFE
                     RGTYTACEPCREDPERPPLWQVKSARIIHNNSEKTIYYENSTLEFAGIPVAYIPYFWS
                     PDPTEKRRTGFLAPHYLSGSAIGTGVGLPFFWNLAPNYDVTITPTFLSRQGVLGNVEW
                     RHRLMTGSYNIRAAGIFQQEGDAFLPAPLGPRDREFRGSLESTGRFHINERWRWGWDI
                     AVLSDKWFLNNYRVRSESIGANYSGLRESISTLYLQGQGDRSWFDMRGYYFRGLTSYD
                     WQKQLPVVLPVIDYNKRIDGPQPLGGEVAVDVNVTNLHRDAASFVQPGKITNLFFPTI
                     AGGGVYPLYETCTVFQRGQCLVRGIAGDYTRASATVSWRRTFIDGMGQSWTPFAYLRG
                     DAYGVRPDFTNFQNPMLANFIGGDTAGARFMPAIGLEYRYPFAGALGTWGTQQVEPIA
                     QIIARPNESRIGSLPNEDAQSLVFDDTSLFNWNKFSGYDRIEGGVRANLGVKYSIQGP
                     NGFYADALFGQSYQVAGRNSYAVGDIANVGLNSGLDSNPSDYVGRTIVSPNQNISFMS
                     RARFDKDDFSVRRFEAGIVANLNPIVPITTSLMYARYAAQPELGLNQRREGIVASAGY
                     NLTSRWSINGGLTFDLDRYLTNRDAFQTAYASYTAGGSIGTAPVYRRPGL"
BASE COUNT          508 a         1003 c          961 g          509 t
ORIGIN      
        1 ggtcgagaat accgcgacgc ttgccggcgt caccgtgttc gccttcgacg agacgggcac
       61 tttccgcgag cgggtcgaag cggcggaagc cgttctgcgc gacggctatt gggagctgaa
      121 ggacgcccgg gttctgacag aggacgagga gccccagagc tacggcacgt acctgatcgc
      181 ctccaatctg gcgccgggcc aagtccggca gtcgttcacg ccgcccgagg cggtcccttt
      241 ctggaagctc gacgacacca tcgcgcaaac ggaacgcgcg gggcttgatg ccacgcgcta
      301 tcgcctgcaa tacgacgtgc ttctggcaag gccgctcctc ttcgtcgcca tggtcctcgt
      361 ggcggcttcc gtttccttaa gattcttccg ctttggtggc gtagcgcgta tggttctcgg
      421 tggcgtggcc gcaggctttc tcctctacgt ggcgacgcgg ctgatggagg acctcggagg
      481 gtccggtctg gtgagccccg tcgtcgcggc gtggttcccg ggcgtggtgg gaagtttgct
      541 cggaacactt gctttgttgt accaggagga cggctgatgg tcctccgggc gaggtgccgg
      601 caggggtcgg gtatgggacg agtacagggg tcggtcgcgg gcgctgcgat cgcgacggcg
      661 ctgatgtgct ccgtcgcgtc cgctccggcg tcggcccaga cgatgaacga cgccctcagc
      721 agccgcatgc agaatgacgg gaacgcccgg ctcttggccg aggcgaagga gctcatctac
      781 gacaacgaga gaaacgtcgt cacggcttcc ggaaacgcgg agctgcacta ccagggccgg
      841 acgcttcagg ccgatcgggt cgtgtacgac cgcaactccg ggcgcgtgtt tgcggaaggc
      901 aatgcccgcc tcaccgaggc caacggggcg gtcatcaccg gcgatcggtt cgagctcacc
      961 gatgatttca agaacggctt catcgattcg ctgcgcctga cgcagaccat gaaggaccgc
     1021 agcggcctcg tgacggcgcg cttctccgcc ccgcgcgccg agcgaatcga aggcgaaagc
     1081 atggtcttcg agcgcgggac ctacacggcc tgcgagcctt gccgcgagga tccggagcgc
     1141 ccaccccttt ggcaggtgaa atcggcgcgc attatccaca acaacagcga gaagacgatc
     1201 tactacgaga attcgacgct cgagttcgcc gggatcccgg tcgcttacat cccgtatttc
     1261 tggtcgccgg atccgaccga aaagcgcagg acgggcttcc tcgcgccgca ctacctctcg
     1321 ggcagcgcca tcggaacggg cgtcgggctg ccgttcttct ggaatctcgc cccgaactac
     1381 gatgtgacga tcacgccgac gttcttgtcc cgccagggag tcctcggaaa cgtcgaatgg
     1441 cgccaccggc tgatgaccgg ctcgtacaac atccgcgccg ccggcatctt tcagcaggag
     1501 ggcgacgcct tcctgccggc cccgctcggc ccccgcgacc gcgagttccg cgggtccctc
     1561 gagtcgacgg gccgcttcca catcaacgag cgctggcgct ggggctggga catcgccgtc
     1621 ctcagcgaca agtggttcct gaacaactac cgggttcgca gcgagagcat cggggcgaac
     1681 tacagcgggc tgcgcgagtc gatctccacc ctttacctgc agggccaggg tgatcgctcg
     1741 tggttcgaca tgcgcggcta ctacttccgc ggactcacct cgtacgactg gcagaagcag
     1801 cttccggtcg tgctgcccgt gatcgattac aacaagcgca tcgatgggcc gcagccgctc
     1861 ggcggcgagg ttgccgtcga cgtgaacgtc acgaacttgc accgcgacgc ggcctcgttc
     1921 gtgcagcccg gcaagatcac caacctgttc ttcccgacca ttgccggggg cggggtgtac
     1981 ccgctctacg agacctgcac ggtgttccag cgcgggcagt gcctggtgcg cgggatcgcc
     2041 ggagactaca cgcgcgcttc cgcaaccgtc tcctggcggc gcaccttcat tgacggcatg
     2101 ggccagagct ggacgccgtt cgcctacctc cgcggagacg cctacggcgt ccggccggat
     2161 ttcacgaact tccagaaccc gatgctcgcg aacttcatcg gcggcgacac cgccggcgcg
     2221 cgcttcatgc cggcgatcgg cctcgagtac cgctacccat tcgccggggc tctcgggaca
     2281 tggggcacgc agcaggtcga gcccattgcg cagatcatcg cgcgccccaa cgagtcgcga
     2341 atcggcagcc ttccgaacga ggacgcccag agcctcgtgt tcgacgacac gtcgctgttc
     2401 aactggaaca agttctccgg ctacgaccgc atcgaaggcg gcgtgcgggc gaatctcggc
     2461 gtcaagtaca gcatccaggg gccgaacggg ttctacgccg acgcgctgtt cggccagtcg
     2521 taccaggtgg ccggacgcaa ctcgtatgcc gtgggcgaca tcgccaacgt cgggctgaac
     2581 tccggcctcg actcgaatcc gagcgactac gtcggccgca cgatcgtttc gccgaaccag
     2641 aacatctcgt tcatgagccg ggcccggttc gacaaggacg acttcagcgt tcgccgcttc
     2701 gaggccggca tcgtcgcgaa cctcaacccg atcgtgccga tcaccacatc gctgatgtac
     2761 gcgcgctatg ccgcgcaacc cgagctcggg ctcaaccagc ggcgcgaggg catcgtcgcg
     2821 tcggcgggtt acaatctgac ctcccgctgg tcgatcaacg gcgggctgac attcgacctc
     2881 gaccgctacc tgacgaaccg ggatgccttc cagaccgcct acgcgagcta cacagcgggg
     2941 gggagcatcg gcaccgcgcc ggtgtatcgc cggcccggcc t
//
LOCUS       DASQWN010000556         2225 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_946469, whole genome shotgun sequence.
ACCESSION   DASQWN010000556 DASQWN010000000
VERSION     DASQWN010000556.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2225)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2225)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2225
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_946469"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(123..1145)
                     /locus_tag="VE686_10475"
     CDS             complement(123..1145)
                     /locus_tag="VE686_10475"
                     /inference="COORDINATES: protein motif:HMM:NF015366.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tripartite tricarboxylate transporter
                     substrate-binding protein"
                     /protein_id="HYY84908.1"
                     /translation="MPIVVEEAHYVWTRRLACASALFAALSTLVSAHAHAQPASRVIT
                     IVVPYAAGGGTDAVARLVGEKMSSALGRPVIVENVVGAGGTIANDRVARSTPDGSTML
                     INHTALLSAPSLFSNLRYDTRTAFEPIGLVNIAPLLLVGRKSIPGSSPKDFVAWIKEQ
                     GAKTTFAHGGVGTNTQLCAVLIGNVLGFKPVFTAYRGSGPALTDLVAGQIDLLCDQAT
                     SALPQVQAGLLHGIAVTSTTRLEQAPDIPTTAEVGLSDLVYTFWHGLYVPKGTPKETV
                     AALNAALRTAVSDSGVREKLKAIGTEPFPAERMSPEAHAALFAEDLDRITKLVESSGL
                     KPSEAK"
     gene            complement(1519..2169)
                     /locus_tag="VE686_10480"
     CDS             complement(1519..2169)
                     /locus_tag="VE686_10480"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY84909.1"
                     /translation="MKPQTRPFVVETKTRRRPAQASDRSWSTVIDEPSPDDLPSRDIR
                     VDGSASEIDTPFAAANRVFSAFASSAISTASTLGDFAESAFGLSRSQDGESESRVAAT
                     GESRTGRILPSLSPLNQFETRVEGEARSISAPLKKGRKRAPKITDTFAGPEPAKEPSR
                     EVVTEQASTESFGATPQSDPERLLVRQPRHRKRDPSGDRVRAGEGWKRRRLPKAMW"
BASE COUNT          362 a          748 c          718 g          397 t
ORIGIN      
        1 ccgtcccgtc tcgcgcactg taattcgccg gacgaacggt gggaaaggcc ccccaggccg
       61 ggcgcttacg tccactatac ggcgcgagca gcggcgtaca gccagcctcc ttattgcgcc
      121 gactacttcg cctcgctcgg ctttaggccg gagctttcga ccagcttcgt gatgcggtcc
      181 aggtcctcgg cgaagagagc cgcgtgggcc tctgggctca tccgttcggc ggggaacggc
      241 tccgtcccga tcgccttgag cttttcgcgg acgcccgaat cgctgacggc ggtccgcagc
      301 gccgcattga gcgccgcgac cgtctccttc ggcgtgccct tcggcacgta caaaccgtgc
      361 cagaacgtgt aaaccaagtc tgacaggcca acctcagcgg ttgtcgggat gtcgggcgcc
      421 tgttccagcc tcgttgtcga cgtcaccgcg atcccgtgca gcaatccggc ctgcacctgg
      481 ggcagggcgc tggtcgcctg atcgcacagc aggtcgattt gcccggcgac caggtcagtg
      541 agagcagggc cggatccgcg ataggcggtg aagactggct tgaagccgag cacgttcccg
      601 atcaacacgg cgcagagttg cgtgttcgtc ccgacgcccc cgtgcgcgaa ggtcgtcttc
      661 gcaccttgct cttttatcca ggcaacgaag tctttcggcg acgacccggg tatcgacttc
      721 cggccgacca ggagcagcgg cgcgatattg acgaggccga tcggctcgaa cgccgtcctc
      781 gtgtcatagc gaaggttgct gaagaggctc ggcgccgaca ggagcgccgt gtgattgatg
      841 agcatcgtcg agccgtccgg cgtcgatcgc gcgacgcggt cgttggcgat ggttccgccc
      901 gcaccgacca cgttctccac gataacgggc cgacccagcg cgctcgacat cttctccccg
      961 acgagtcgcg ctacggcgtc cgtgcctcct cctgccgcgt aaggaacgac gatcgtgatg
     1021 accctcgacg ccggctgagc atgagcgtgc gccgagacga gagtgctcag cgctgcgaac
     1081 agcgccgaag cgcatgcgag ccgtcgtgtc cacacgtaat gggcctcctc aacaacgatg
     1141 ggcacgcgag ctcatcgctg ccgcgacgcg aaacgtacga ggtaccgtcc acgaagggaa
     1201 ccgccgtccc accccgaccc gcacccgaag ccgcatgcgc actgccgagc cgacgcgact
     1261 tgcataaccg caagggcggc cctccggaca gcttcagccc cgagccgggc gaagcgccgc
     1321 ggcgagcgtc gctcgcagac cagggagagc gcatcaacat gcgggcgctc cctggcgaga
     1381 cgggcggggt gaacgtcaac acgggagtgc catccgcaca gagaacagct tgtgccgcac
     1441 tgccgatctc catgcccccg atccgagcgg gtgctccggt ccttttcgcg gcagccacgc
     1501 ggcgctagag gctgcgggtt accacatggc cttcggcaac cggcggcgct tccagccttc
     1561 gccagcacgg acgcgatcgc cagatggatc ccgcttgcga tgccggggtt gccgcacaag
     1621 caatctttcg ggatcactct ggggtgtagc gccgaagctt tcagtgctcg cctgctcggt
     1681 gacgacttct cggctcggct ccttcgccgg ttctgggcca gcaaaggtgt ccgtgatctt
     1741 gggcgcgcgt ttccggcctt tcttgagggg cgctgagatc gaacgtgcct ctccttcgac
     1801 ccgcgtttcg aactggttta gcggcgatag cgacgggaga atgcgtccgg tgcggctctc
     1861 cccggtggca gcgacccggc tctcgctctc cccgtcctgc gacctcgaca ggccgaatgc
     1921 gctttcggcg aagtccccta gggtagatgc cgttgagatg gcgctcgacg caaaggcgct
     1981 aaacacgcga ttcgccgcgg cgaatggcgt gtcgatttca ctggctgagc cgtccacgcg
     2041 gatatcccgg ctgggcagat cgtcaggcga tggttcgtcg atgacagtgc tccagctcct
     2101 gtcgcttgcc tgggccggcc tgcgcctggt tttcgtttcg accacgaagg gtcgggtctg
     2161 cggcttcatg cgtgctcgta tctcgaaaaa ggggaggcca cgccgactcg gcggaggtct
     2221 agttc
//
LOCUS       DASQWN010000557         2524 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_150262, whole genome shotgun sequence.
ACCESSION   DASQWN010000557 DASQWN010000000
VERSION     DASQWN010000557.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2524)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2524)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2524
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_150262"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..525)
                     /locus_tag="VE686_10485"
     CDS             complement(<1..525)
                     /locus_tag="VE686_10485"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter permease"
                     /protein_id="HYY84910.1"
                     /translation="MEAATARLGRGRKKRGKTYGSEERRLAALLLTPAMAVIALVAAY
                     PIGYAIWLSLTEYSVRVPGKWRFAGFDNYTEAFGSSEFWTAVKNTFIFTGVSVTLELA
                     IGLGMAIAMHEAFKGRGLLRTVVLVPWAVLTVVSAITWRTLFEPNLGLAPQVLDVFGI
                     GGNIVWLGQEGYAMA"
     gene            complement(530..1792)
                     /locus_tag="VE686_10490"
     CDS             complement(530..1792)
                     /locus_tag="VE686_10490"
                     /inference="COORDINATES: protein motif:HMM:NF024808.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HYY84911.1"
                     /translation="MKTPRFMVVLVATVVLAIAGCGSDDSDTGGGGDAKKATKAKASG
                     DVTWCIGKDTSGAFGTVVDSFNKANPNANVKLLELPEDAGEQRRLQIQRLEAESPECD
                     VLGTDVIWTAEYAAQGWLQDVSDFISQNGDKFIPSTVDTTEFEGKNYAVPFNSNAGFI
                     YYRKDQVSQPPDDWQALYDEAKQNNGVVYQGFRYEGLTVNFLELLYSAGGTVISEDGK
                     EATADSPEVKDVLTFMSDGIKDGAAPKANTTYKEEESRRAFESGNATFMRNWPYAYAL
                     GKDSKIADKFDISTFPGYNGNEGAGVLGGYNLAISSYSKNPEGSLAFIEYATEPEQQK
                     IMATEASLPPTVTETYDDPEVKKAMPFAAELRDAIDQAQPRPVSPVYPQISEAIFNNV
                     YSALQGKTSPDEAASKMNEEIQKALETF"
     gene            complement(1883..2458)
                     /locus_tag="VE686_10495"
     CDS             complement(1883..2458)
                     /locus_tag="VE686_10495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020181373.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type 1 glutamine amidotransferase
                     domain-containing protein"
                     /protein_id="HYY84912.1"
                     /translation="MGQRLEGKKVAFLATDGVEQVELTEPWKKVEEEGGTPELVSLES
                     GEIQGFDHLDKGDMFKVDRAVEDASEGDYDGLVLPGGVANPDFLRVDENAVSFVRSFF
                     EAGKPVAAICHAPWTLVEADVVRDRKLTSWPSLQTDIRNAGGNWVDEEVVVDNGLVSS
                     RKPDDLPAFCAKLAEEICEGEHAGQRAGSAH"
BASE COUNT          381 a          866 c          799 g          478 t
ORIGIN      
        1 cgccatcgcg tagccctcct gcccgagcca cacgatgttc ccgccgatcc cgaagacgtc
       61 gaggacctgc ggtgcgagcc cgaggttcgg ctcgaagagc gtccgccacg tgatcgcgct
      121 gaccacggtg agcacggccc acggcacgag tacgacggtc cgcaataggc cgcggccctt
      181 gaacgcctcg tgcatcgcga tcgccatgcc gaggccgatc gccagctcaa gcgtgaccga
      241 gacgccggtg aagatgaagg tgttcttcac cgcggtccag aactccgacg agccgaacgc
      301 ctccgtgtag ttgtcgaagc ccgcgaaccg ccacttgccg ggcacgcgga cgctgtactc
      361 ggtcagggac agccagatcg catacccgat cgggtacgcg gccaccagcg cgatgaccgc
      421 catggccggc gtgaggagca gcgcggcaag gcgccgctcc tcgctgccgt aggtcttgcc
      481 gcgcttcttg cggccgcgac ccaatcttgc cgttgcggct tccatgcgcc tagaacgtct
      541 cgagggcctt ctggatctcc tcgttcatct tgctcgccgc ttcatcgggc gaggtcttcc
      601 cctgaagcgc cgagtacacg ttgttgaaga tcgcctcgct gatctgcggg tagaccggcg
      661 acaccgggcg cggctgcgcc tggtcgatgg cgtccctcag ctcggcggcg aacggcatgg
      721 ccttcttcac ctcggggtcg tcgtaggtct cggtgaccgt cggcggcagc gatgcctccg
      781 tcgccatgat cttctgctgc tcgggctcgg tggcgtactc gatgaatgcg agcgaaccct
      841 cggggttctt cgagtaggac gagatcgcca ggttgtaacc gccgagcacg cccgcgccct
      901 cgttgccgtt gtagcccggg aaggtcgaga tgtcgaactt gtcggcgatc ttcgagtcct
      961 tgcccagcgc gtaggcgtac ggccagttgc gcatgaaggt ggcgttgccg gactcgaagg
     1021 cccgccgcga ctcctcctcc ttgtaggtcg tgttggcctt cggcgccgcg ccgtccttga
     1081 tgccgtcgga catgaaggtc aggacatcct tgacctccgg agagtcagcg gttgcctcct
     1141 tgccgtcctc cgagatcacg gttccgccgg cgctgtaaag gagctcgagg aagttcacgg
     1201 tcaggccctc gtagcggaag ccctggtaga cgacgccgtt gttctgcttc gcctcgtcgt
     1261 agagcgcctg ccagtcatcg ggcggctgcg aaacctggtc cttgcggtag tagatgaagc
     1321 ccgcgttcga attgaacggg accgcatagt tcttgccctc gaactcggtc gtgtcgaccg
     1381 tcgaggggat gaacttgtcg ccgttctgcg agatgaagtc tgagacgtcc tggagccagc
     1441 cctgggccgc gtactccgcg gtccagatca cgtcggtgcc cagaacgtcg cactcgggcg
     1501 actccgcctc gaggcgctgg atctgaagcc tgcgctgctc gcccgcgtcc tcaggcagct
     1561 cgaggagctt cacgttggcg ttcgggttcg ccttgttgaa gctgtccacg accgttccga
     1621 acgcgccgct ggtgtccttg ccgatgcacc aggtcacgtc gccggaggcc ttggccttcg
     1681 tcgccttctt ggcgtcgccg cctccaccgg tgtcgctgtc gtcgcttccg catccggcga
     1741 tcgccaggac caccgtcgcc accagcacga ccatgaaccg cggggtcttc atcagagagt
     1801 tccctcctcc tagggcacgt tcacttgggc gatacccgct gagcgcggga aatactccga
     1861 tggcctggag gccaatgtgc gcttaatgcg ctgagccggc cctctggccc gcgtgctcgc
     1921 cctcgcagat ctcctccgcc aacttggcgc agaaggccgg gagatcgtcc ggcttgcgac
     1981 tcgacacgag gccgttgtcc acgacaacct cctcgtcgac ccagttgccg cccgcgttgc
     2041 ggatgtccgt ttgcaggctc ggccacgagg tgagcttccg gtcgcggacc acgtcggcct
     2101 cgacgagcgt ccacggggcg tggcagatcg ccgccaccgg cttgccggcc tcgaagaacg
     2161 agcgcacgaa gctcacggcg ttctcgtcga cccgcaggaa gtcggggttg gccacgccgc
     2221 ccggaagcac caggccgtcg tagtcgccct cgctggcgtc ctcgaccgcg cgatcgacct
     2281 tgaacatgtc gcccttgtcg aggtgatcga agccctggat ctcgccgctc tcgagcgaga
     2341 cgagctcagg tgtgccgccc tcctcctcga ccttcttcca cggctcggtc agctcgacct
     2401 gctccacgcc atccgtagcg agaaacgcga ccttcttgcc ttcaagtctt tgtcccatga
     2461 catcggggta ccggggcggt gggcggctaa acgagcagct cgagcacttc ggcggcggca
     2521 gcct
//
LOCUS       DASQWN010000558         2045 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_449628, whole genome shotgun sequence.
ACCESSION   DASQWN010000558 DASQWN010000000
VERSION     DASQWN010000558.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2045)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2045)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2045
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_449628"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(3..410)
                     /locus_tag="VE686_10500"
     CDS             complement(3..410)
                     /locus_tag="VE686_10500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009490897.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY84913.1"
                     /translation="MNKAVVLALALAAAASPAFGQSQGSSRSDDQEGYSSGRERGGGA
                     WREDRGWRERDGDRWKRAWDDERSSRRPTSGASFMVRSGDARVAVRCDAGESMRACVD
                     ATLVLLDRVRSGSTASGPGTSAGSGSPTPTPPR"
     gene            complement(857..1507)
                     /locus_tag="VE686_10505"
     CDS             complement(857..1507)
                     /locus_tag="VE686_10505"
                     /EC_number="2.3.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020092879.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016746 - acyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0071972 - peptidoglycan L,D-transpeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0018104 - peptidoglycan-protein
                     cross-linking [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="L,D-transpeptidase"
                     /protein_id="HYY84914.1"
                     /translation="MHRTVVAALAGLVSAVALAASPATAQTYDRYGYDRYAAYAPQTS
                     YSAYSVDPLTGQALSPYQEEYRPQASAIPRELVQFDPRYAPGTIVISTEERRLYYVTQ
                     RGEAIQYAVGVGRPGFEWAGTKSVTAKKEWPSWTPPAEMLRRRPDLPRHMVGGLDNPL
                     GARAMYLGGSLYRIHGSNEPETIGQAVSSGCIRMTNEDVIDLYNRVKLGTKVVVLR"
     gene            complement(1682..>2045)
                     /locus_tag="VE686_10510"
     CDS             complement(1682..>2045)
                     /locus_tag="VE686_10510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012321848.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="gfo/Idh/MocA family oxidoreductase"
                     /protein_id="HYY84915.1"
                     /translation="GDLSELSIEATLTAGGVPVRLTGGVGATDKDDHNTFELEGEAGS
                     VRVRDWAFAERLVGDLWTASPDALPNERMRPLVLARQLAKVAALTRGESQNLATVREA
                     LEVQEVVEAILQGRSGRG"
BASE COUNT          311 a          698 c          708 g          328 t
ORIGIN      
        1 gctcagcggg gcggggttgg cgtcggcgag ccagagcccg cgctcgtacc ggggcccgag
       61 gcggtggacc ccgaccgcac acgatcgagc aggacgagcg tcgcatcgac gcaagcacgc
      121 atactctcgc cggcatcgca gcgcaccgcc accctggcgt cgccgctgcg aaccatgaag
      181 ctcgcgccgc ttgtcggcct gcggctggag cgctcgtcat cccacgccct tttccatcgg
      241 tcgccatcgc gctcacgcca accccgatcc tcgcgccacg ccccgccgcc tcgttcgcgg
      301 ccgctggagt agccttcctg atcatccgag cgggacgacc cctggctttg gccgaatgcc
      361 ggcgaggccg cggcggcgag cgccaatgcc aacacgactg ctttgttcat ggctctcatt
      421 cctggagttc ggggggcaaa ccgctttcag cggcggctgt ggcgggtcaa cgcgcgccct
      481 agtccatcgt tcgcttcgtg tcctaggccc accactcctc aacgagacga cccccttcca
      541 gaatgcgtgc gccttctgca ctgcgtggcc agccgccccg acctgagagg gcccttaatc
      601 gtgcgatcaa cacgtcggcg ctcaccgccg tctctccggg gctacgggca atgacctccg
      661 gtcgcccgtc ctggcctcgt cgaacgaact gaacctcgaa gatcatggcg acgcgctccc
      721 ttggcctgca cagaaaccct cgcgggaggc acttgtttca caacgatgag cgggggtgag
      781 agtccgtggc gatcccgggc gctagacgcg aaacggccgg ccgcgagggc cggccgttgt
      841 ggtgaaggat ggcgggtcag cgcaggacga cgaccttggt gccgagcttg acgcggttgt
      901 agaggtcgat cacgtcctcg ttggtcatgc ggatgcagcc cgacgagacc gcctgcccga
      961 tggtctccgg ctcgttcgag ccgtgaatgc ggtacaggga gccgccgaga tacatggcgc
     1021 gcgcgccaag cgggttgtcg agcccgccga ccatgtggcg cggcaggtcg ggacggcggc
     1081 gcagcatctc ggccggcggc gtccagctcg gccactcctt cttggccgtc acggacttgg
     1141 taccggccca ctcgaagcca gggcggccga cgccgacggc gtactggatc gcctcgccgc
     1201 gctgggtcac gtagtagagc cggcgctcct cggtcgagat gacgatggtg cccggggcgt
     1261 agcgcgggtc gaactgcacg agctcgcgcg gtatcgcgga ggcctgcgga cggtactctt
     1321 cctggtaggg cgagagcgcc tgtccggtga gcggatcgac cgagtaggcc gagtagctcg
     1381 tctggggcgc gtaggccgcg tagcggtcat agccgtagcg gtcataggtc tgtgcagtgg
     1441 ccggagaggc cgcgagggca acagcgctca cgagcccggc gagggcggcg acgacggtgc
     1501 gatgcattgg gaagtgtccc cgtgactgtt gggaagagaa cgcaatggcc acggttcggt
     1561 tgcatcgtgc ctcgctgtat tcccgacgcg gaacacgtca tcgtgaatcg aggcttaggt
     1621 ccatcgcgta gccggaacgc aaagcctggc agcttcccgc caacgcagcg agggacggat
     1681 gctagcctcg tccagagcgt ccctgcagga tcgcttcgac gacctcctgg acctcgagcg
     1741 cctcacgcac ggtcgcgagg ttctggctct cgccccgggt cagggccgcg accttggcga
     1801 gctggcgcgc gagcacgagg ggccgcatgc gctcgttcgg cagggcgtcc ggcgaggccg
     1861 tccagaggtc accgacgagg cgctcggcga aagcccagtc gcggacgcgg actgagccgg
     1921 cctctccctc cagctcgaag gtgttgtggt cgtccttgtc ggtggcgccg acgcccccgg
     1981 tgaggcgcac cggtacgccc ccggccgtca gggtcgcctc gatgctgagt tcgctcaaat
     2041 ccccg
//
LOCUS       DASQWN010000559         2324 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_150568, whole genome shotgun sequence.
ACCESSION   DASQWN010000559 DASQWN010000000
VERSION     DASQWN010000559.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2324)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2324)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2324
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_150568"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..370
                     /locus_tag="VE686_10515"
     CDS             <1..370
                     /locus_tag="VE686_10515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015688271.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HYY84916.1"
                     /translation="LLGSGLQGFALLLYLGFDGMTSLYVISALFGLFQGGIVPSYAII
                     VREYFPANEAATRLGVVLMATLFGMAFGGWLSGAIFDLTGSYKAAFLNGVLWNVLNFG
                     IVAWLITRSTWRLRLQGSAA"
     gene            484..1230
                     /locus_tag="VE686_10520"
     CDS             484..1230
                     /locus_tag="VE686_10520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011504551.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YebC/PmpR family DNA-binding transcriptional
                     regulator"
                     /protein_id="HYY84917.1"
                     /translation="MAGHSQFKNIMHRKGRVDAQRSKLFSKLAREITVAAKMGMPDPN
                     MNPRLRAAILAARAENMPKDNIERAIKKAQGGDAENYDEIRYEGYGPGGAAIIVEAMT
                     DNRNRTASDVRSTFTKSGGNLAETGAVSFMFDHVGVVQFAPEAADADAMFEAAIEAGA
                     EDVVSTPGGHEVYCEQGALADVTKALEARFGEPRKSALVWRPQNTIAVDDDAGEKLLR
                     LMESLEDHDDVQNVFVNFEVSDALMQKMGG"
     gene            1290..1736
                     /gene="ruvC"
                     /locus_tag="VE686_10525"
     CDS             1290..1736
                     /gene="ruvC"
                     /locus_tag="VE686_10525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016918913.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008821 - crossover junction DNA
                     endonuclease activity [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="crossover junction endodeoxyribonuclease RuvC"
                     /protein_id="HYY84918.1"
                     /translation="MVTIEGTRLSFVACGAVVSNDKLPLSERLKQLHAGLTEVMRGFT
                     PDEVGVEETFVNKDAQATLKLGHARGVALLVPALAGIPVAEYAANLVKKTVVGAGHAE
                     KRQIHAMVRVLLPKADPQTDDAADALAIAITHAHHRKARALAAASR"
     gene            1783..>2324
                     /gene="ruvA"
                     /locus_tag="VE686_10530"
     CDS             1783..>2324
                     /gene="ruvA"
                     /locus_tag="VE686_10530"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012330819.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009379 - Holliday junction helicase
                     complex [Evidence IEA];
                     GO_function: GO:0009378 - four-way junction helicase
                     activity [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction branch migration protein RuvA"
                     /protein_id="HYY84919.1"
                     /translation="MIGKLKGVLDAYGEDFVIIDVHGVGYVVHCSSRTLQNLPPVGEA
                     ATLSIETHVREDMIRLFGFRSDGEREWFRLLQTVQGVGAKVALGILSVLDPGGLGTAI
                     ATGDKASVARAPGVGPKLAARIVAELKDKAPAFAGVDPALIRLSGGIEERTAPQPVSD
                     AVSALVNLGYAQAQASAAIAA"
BASE COUNT          357 a          841 c          770 g          356 t
ORIGIN      
        1 gctcctcggc tcgggccttc agggctttgc gctgcttctc tatctcggct tcgacggcat
       61 gacgtctctg tacgtcatct cggccctgtt cgggctcttc cagggcggca tcgttccgag
      121 ctacgccatc atcgtgcgcg agtacttccc cgccaacgag gcggcgacgc ggctcggcgt
      181 ggtgctcatg gcgacgctgt tcggcatggc tttcggcggc tggctttcgg gcgcgatctt
      241 cgacctcacc ggctcgtaca aggccgcgtt cctgaatggc gttctgtgga acgtgctcaa
      301 tttcggcatc gtggcctggc tgatcacccg ctcgacctgg cgcctgcggc tgcagggctc
      361 cgccgcgtga ggggacccgc aagggtggag ttcgcgggtg ccgcgcccta taaggccgga
      421 aatcttcaca acgtcgcgtc gacgggccgc ctgggcggcc ctccgcatcg ccgcaggtga
      481 gccatggccg gtcattccca gttcaagaac atcatgcacc gcaaggggcg ggtcgacgcc
      541 cagcgctcca agctcttctc caagctcgcc cgcgagatca ccgtggccgc caagatgggc
      601 atgcccgacc cgaacatgaa cccgcgcctg cgcgccgcga tcctcgccgc ccgggccgag
      661 aacatgccga aggacaacat cgagcgcgcg atcaagaaag cgcaaggcgg cgacgcggag
      721 aactatgacg aaatccgcta cgagggctac ggcccggggg gcgcggcgat catcgtcgag
      781 gcgatgaccg ataaccgcaa ccgcaccgcg tcggacgtgc gctccacctt cacgaagtcg
      841 ggcggcaacc tcgccgagac cggggcggtg tcgttcatgt tcgaccacgt cggggtggtg
      901 cagttcgccc ccgaggcggc cgacgccgac gccatgttcg aggccgcaat cgaggccggc
      961 gccgaggacg tcgtctcgac gcccggcggt cacgaggtct actgcgagca gggcgcgctc
     1021 gccgatgtga ccaaggccct cgaggcgcgc ttcggcgagc cgcgcaagtc cgccctggtg
     1081 tggcggccgc agaacaccat cgcggtcgac gacgatgccg gcgagaagct cctgcgcctc
     1141 atggagagcc tcgaggacca cgacgacgtg cagaacgtct tcgtcaactt cgaggtctcc
     1201 gacgccctca tgcagaagat gggcgggtga gccctcccgc ggtccggatc ctcggcatcg
     1261 atccgggcct gcgccgcacc gggtggggga tggtgaccat cgagggcacg cgcctgtcgt
     1321 ttgttgcctg cggggccgtc gtctcgaatg acaagctgcc cctgtccgag cgcctgaagc
     1381 agctccacgc cgggctcacc gaagtgatgc ggggctttac gcccgacgag gtcggggtcg
     1441 aggagacctt cgtcaacaag gacgcccagg cgacgctgaa gctcggccat gcccgcggcg
     1501 tcgcgctgct cgtcccggca ctcgccggca tccccgtcgc cgaatacgcc gccaatcttg
     1561 tcaagaagac cgtcgtcggg gccggtcacg ccgagaagcg gcagattcac gccatggtcc
     1621 gcgtgctcct gcccaaggcc gacccgcaga ccgacgacgc cgccgacgcg ctcgccatcg
     1681 ccatcaccca cgcccaccac cgcaaggccc gcgcgctcgc ggccgcctcc cgttgacacg
     1741 gcgccgcgaa tcctcctccc ctccgagcga gaggggcacg gcgtgatcgg caagctcaag
     1801 ggcgtcctcg acgcctacgg cgaggacttc gtcatcatcg acgtccacgg cgtcggctac
     1861 gtcgtgcact gctcctcccg cacgttgcag aacctcccgc ccgtaggcga agccgcgacc
     1921 ctgtccatcg agacgcacgt gcgcgaggac atgatccgcc tgttcgggtt ccggtcagac
     1981 ggcgagcgag agtggttccg cctgctccag accgtgcaag gcgtcggcgc gaaggtggcg
     2041 ctcgggatcc tgtcggtgct cgatcctggc ggcctcggga ccgcgatcgc gacgggcgac
     2101 aaggcgtcgg tcgcccgcgc gcccggcgtc ggcccgaagc tcgccgcccg aatcgttgcc
     2161 gagctcaagg acaaggcgcc cgccttcgcc ggggtcgatc ccgccctcat ccgcctctcg
     2221 ggcggcatcg aggagcgcac ggcgccgcag cccgtctccg acgcggtgtc ggccctggtc
     2281 aacctcggct acgctcaggc ccaggcctcc gcggcgattg ccgc
//
LOCUS       DASQWN010000560         2511 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_150647, whole genome shotgun sequence.
ACCESSION   DASQWN010000560 DASQWN010000000
VERSION     DASQWN010000560.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2511)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2511)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2511
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_150647"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..666)
                     /gene="lpxI"
                     /locus_tag="VE686_10535"
     CDS             complement(<1..666)
                     /gene="lpxI"
                     /locus_tag="VE686_10535"
                     /EC_number="3.6.1.54"
                     /inference="COORDINATES: protein motif:HMM:NF037151.4"
                     /note="LpxI, functionally equivalent to LpxH, replaces it
                     in LPS biosynthesis in a minority of bacteria; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-2,3-diacylglucosamine diphosphatase LpxI"
                     /protein_id="HYY84920.1"
                     /translation="MRVGEGGPVAIMAGSGQLPVLLSDSLRRSGREHKILAFRGFAEG
                     PTRERADRVVDLLDLQGMTRVLDEWRPSAVTFAGAVGRPRAAAFLNALSALRNRRELA
                     ALMAKGDDGLLRSAVGFFEERGYVVVGAHELAPELLAAPGLLTLAAPGAHDTRALEIG
                     FGTLEDLSARDMGQACVVTGERILAIEGPEGTDSMLARVRAFRRPWSRVRVEAGGVLV
                     KTAK"
     gene            complement(663..1493)
                     /gene="lpxA"
                     /locus_tag="VE686_10540"
     CDS             complement(663..1493)
                     /gene="lpxA"
                     /locus_tag="VE686_10540"
                     /EC_number="2.3.1.129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019905346.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008780 -
                     acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine
                     O-acyltransferase activity [Evidence IEA];
                     GO_process: GO:0008610 - lipid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-ACP--UDP-N-acetylglucosamine
                     O-acyltransferase"
                     /protein_id="HYY84921.1"
                     /translation="MSETLIHPTAVIDPDARVRDGARIGASCVIGPFCLIGPDVELGE
                     GCELISHVVLAGHAKIGARTRIYPFASLGHPPQDLTYAGEATTLTVGSDCIIREGVTM
                     NPGTARGTRATVVGDRCAFFANSHVAHDCVVGNNVIMSNNVMLGGHCRIGDFVILGGG
                     VGVHQFVRIGSHAFAAGMSALPEDVIPYGMALGNRAHLAGLNIVGMRRRGFTREQIHD
                     VRRAYRLLFADEGTLKERVEDVAEEFSKHPIVHEILDFIREGADRAICTPRRDPAESG
                     "
     gene            complement(1493..1954)
                     /gene="fabZ"
                     /locus_tag="VE686_10545"
     CDS             complement(1493..1954)
                     /gene="fabZ"
                     /locus_tag="VE686_10545"
                     /EC_number="4.2.1.59"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017483427.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-hydroxyacyl-ACP dehydratase FabZ"
                     /protein_id="HYY84922.1"
                     /translation="MNDTPVKLDSADITKILELLPHRYPFLLVDRIVDIDGDRSCVGI
                     KNVTFNEPQFTGHFPSRPVFPGVLLIEGMAQTAGAICVLSKLDQARPQQVFFMTIDKA
                     KFRKPVMPGDTVEFHMSKLNQRRNMWWYRGEAKVTGVLVAEAEVSAMLVLD"
     gene            complement(1991..>2511)
                     /locus_tag="VE686_10550"
     CDS             complement(1991..>2511)
                     /locus_tag="VE686_10550"
                     /EC_number="2.3.1.191"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012453947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016410 - N-acyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0009245 - lipid A biosynthetic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="UDP-3-O-(3-hydroxymyristoyl)glucosamine
                     N-acyltransferase"
                     /protein_id="HYY84923.1"
                     /translation="GNRVIVHPGARIGQDGFGFAMGPGGHVKVPQIGRVIIQDDVDIG
                     ANSTVDRGSTRDTVIGEGTKIDNLVHIGHNVVIGRHCVIVAMTGLSGSTTLEDFVVLG
                     GQVGVVGHVRIGQGAQIVGSSNVNSDVPPGARWGGTPAKPVRDWFREMTTLKTLASRS
                     VLAKDDGRLPPE"
BASE COUNT          412 a          852 c          861 g          386 t
ORIGIN      
        1 cttcgcggtc ttgaccagaa cgcccccggc ctcgacgcgg acgcgactcc aggggcggcg
       61 gaaggcgcgc acgcgggcga gcatgctgtc ggtgccctcg ggaccctcga tggcgaggat
      121 tcgctcgccg gtcacgacgc aagcctgccc catgtcgcgg gcggagagat cctcgagcgt
      181 cccgaagccg atttcgaggg cgcgcgtgtc gtgggccccc ggagcggcca gggtcaggag
      241 acccggggct gcgaggagct ccggcgcgag ctcgtgcgct cccacgacca cgtagccgcg
      301 ctcctcgaag aagccgacag cgctgcgcag gagcccgtcg tcgcccttgg ccatcagcgc
      361 ggcgagctcg cggcgattgc gcagggctga gagggcgttg aggaacgccg ccgctcgggg
      421 ccgacccacc gcccccgcga aggtgacggc gctcggacgc cactcgtcga ggacgcgcgt
      481 catcccctgc aggtcgagaa gatcgacgac ccggtcggcc cgctcgcgtg tcggcccctc
      541 ggcaaagcca cggaaggcga ggatcttgtg ctcccggccg ctccgacgaa ggctgtccga
      601 gagcagcacg ggaagctggc ccgaccccgc catgatggcg acgggaccgc cttcgcctac
      661 cctcatcccg actccgccgg gtctcggcgc ggcgtgcaga tcgcccggtc ggctccctcg
      721 cggatgaaat cgaggatctc gtgcacgatc gggtgcttcg agaactcctc ggcgacgtcc
      781 tcgacccgct ccttgagcgt gccctcgtcg gcgaaaagga gccggtaggc acggcggacg
      841 tcgtggatct gctcgcgcgt gaagccgcgc cgccgcatgc cgacgatgtt gaggccggcc
      901 agatgcgcgc ggttgccgag ggccatgccg taggggatca cgtcctcggg cagcgccgac
      961 atcccggccg cgaaagcatg cgatccgatg cgcacgaact ggtgcacgcc gacgccgccg
     1021 ccgaggatca cgaagtcgcc gatccggcag tgcccgccga gcatcacgtt gttcgacatg
     1081 atgacgttgt tgcccaccac gcaatcatgc gccacatgcg agttggcgaa gaaggcacag
     1141 cgatcgccga cgaccgtcgc ccgggtgccg cgcgcggtcc cgggattcat cgtgacccct
     1201 tcgcggatga tgcaatcgga gccgacggtc agggtcgttg cctccccggc gtaggtgagg
     1261 tcctgcggcg ggtgaccaag gctggcgaag gggtagatgc gcgtgcgcgc gccgatcttc
     1321 gcgtggcctg cgaggacgac gtggctgatg agctcgcagc cctcaccgag ctccacgtcg
     1381 gggccgatga ggcagaacgg gccgatgacg caggaggctc cgatccgcgc gccgtcgcgc
     1441 acgcgcgcgt cggggtcgat gacagccgtc ggatggatga gagtctcgga catcagtcca
     1501 gcaccaacat ggcgctgact tccgcctcgg cgacgagcac gcccgtcacc ttcgcctcgc
     1561 cgcggtacca ccacatgttc cggcgctggt tcagcttcga catatgaaac tcgacggtgt
     1621 cgcccggcat gaccggcttg cggaacttgg ctttgtcgat ggtcatgaag aacacctgct
     1681 gcggccgcgc ctgatcgagc ttcgacaaga cgcagatcgc cccggcggtc tgcgccatgc
     1741 cctcgatcag cagcacgccc ggaaacaccg gacgagacgg gaaatggccg gtgaactgag
     1801 gctcgttgaa ggtgacgttc ttgatgccga cgcacgaacg gtcgccgtcg atgtccacga
     1861 tgcggtcgac gagcaggaac gggtagcgat gcggaagcag ctcgaggatc ttggtgatgt
     1921 cagcggaatc gagcttcacc ggcgtgtcgt tcatcgcgca ctccgcaagg ggggcggccg
     1981 ccccactctg tcactcgggc gggagcctgc cgtcgtcttt ggcgagaacg gaccgggatg
     2041 caagcgtttt cagggtcgtc atttcgcgga accagtcacg aacgggtttc gccggcgttc
     2101 cgccccaacg tgcgccggga ggcacatccg agttgacgtt gctcgatccg acgatctggg
     2161 cgccttgccc gatgcggacg tgaccgacga cccccacttg cccgcccagc acgacgaaat
     2221 cctcgagggt ggtcgagccc gaaagcccgg tcatcgcgac gatgacgcag tgccgaccga
     2281 tgaccacgtt gtggccgatg tgcacgaggt tatcgatctt ggtgccctcg ccgatcaccg
     2341 tgtcgcgggt gctgccgcga tcgacggtcg agttcgcgcc gatgtcgacg tcgtcctgga
     2401 tgatgacgcg cccgatctgc ggcaccttga catgtccccc cggccccatg gcgaagccga
     2461 acccgtcctg gccgatccgc gcgcccggat ggacgatgac tcgattgccg a
//
LOCUS       DASQWN010000561         3897 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_450706, whole genome shotgun sequence.
ACCESSION   DASQWN010000561 DASQWN010000000
VERSION     DASQWN010000561.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 3897)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3897)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3897
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_450706"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(333..1940)
                     /locus_tag="VE686_10555"
     CDS             complement(333..1940)
                     /locus_tag="VE686_10555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011089326.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HYY84924.1"
                     /translation="MADLSSTYDVVVVGAGHNGLTCAAYLALAGLKVKVVERRDVVGG
                     AAVTEEFHPGFRNSVAAYTVSLLAPKVIQDLRLHEHGLRIVERRAQNFLPTLDGRYLL
                     TGGGRTRDEIAKFSARDAERWEAFSAELGAVADVLRGLMLKPPPNVVEGFGIRAAAEV
                     VRAATLGGTMSRLPMEQRRALLDLFTKSAADYLDGWFEGDGIKALLGFDAVVGNYASP
                     YAPGTAYVFLHHAFGEVNGKKGVWGHAIGGMGAITQAMASAGRAAGVEIETGAPVDEV
                     LTERGGAVGVRLSDGRTIRARAVAANVNPKLLYTRMIPEAALRPEFLARMRRWRCGSG
                     TFRMNVALSELPSFTCLPGRDLADHHTSGIIIAPSLAYMDRAYDDARRHGWSREPVVE
                     MLIPSTVDDTLAPPGRHVASLFCQHVAPDLPDGRSWDECRDEVADVMIETVDRYAPGF
                     KASVIARQALSPLDLERVFGLTGGDIFHGALSLDQLFSARPMLGHADYRGPLRGLYHC
                     GSGAHPGGGVTGAPGHNAAATIARDLA"
     gene            2013..2591
                     /locus_tag="VE686_10560"
     CDS             2013..2591
                     /locus_tag="VE686_10560"
                     /inference="COORDINATES: protein motif:HMM:NF015639.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YkgJ family cysteine cluster protein"
                     /protein_id="HYY84925.1"
                     /translation="MAERVIKDDQKRVYFDCNKCPAFCCSVYERVEVTKRDLNRLARH
                     FGVTPEQAKRRYTRQREGQRVLKRVEDEIFNEVCMFLDQKTRRCGIYLGRPAVCRTYP
                     ARSRCAYYDLLQFERKQQGNENVVPVVTITFREVEEEVVGGEDGPEVVEEWGRDVTQE
                     VGGAKKDPDAVEVRDLADAAAPLLNPTQKPDA"
     gene            complement(2563..>3897)
                     /locus_tag="VE686_10565"
     CDS             complement(2563..>3897)
                     /locus_tag="VE686_10565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013504570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-amylase family glycosyl hydrolase"
                     /protein_id="HYY84926.1"
                     /translation="AAHGRGLKVILDYVPNHTSDRHPWFIESRSSRTNPKRDWYIWRD
                     GKPDGSPPTNWVSEFGGPAWTFDEGTGQHYYHAYLNEQPDLNWRNPDVRAAMLDVLRF
                     WFERGVDGFRVDAIHQLIESEELIDNPRNPDWRPGMSPARSLIRAYTMDQPEVHEAIA
                     AMRHVADEYSGRVMIGEAYLPIDRLMAYYGVDLTGFHLPFNFHLIASAWQPVAISALI
                     DAYEAALPPGGWPNWVLGNHDRSRVATRLGPAQARIAAMLLLTLRGTPTIYQGEEIGM
                     TDVPIPPEKVQDPWERNVPGLGLGRDPERTPMQWDPSPNAGFTTGEPWLPLASDYAAM
                     NVAAQAADPRSMLSLYRALLALRRAEPALSVGRYVPVSADAAVLAYERRHDDARLLVA
                     LNLSADEQPLDRACEGTLLLSTSLDRPSGQGMPPTLRSNEGVVIRRPASAWD"
BASE COUNT          600 a         1298 c         1418 g          581 t
ORIGIN      
        1 aaggctcgac ccgctggtcc tgcgctgggc gcggtgagcc ccagggccga gcgaggccat
       61 caggcgtcca gacagacgtg cgtcattgtc cccgcggcct ccttggcccg agtttttgag
      121 agaaaggtcg aggggctgcg cggagcgcga cgggcccgat aactttttac gggcccatcg
      181 gccccgcgca cggtgttttt tggtcagccg ctgaggccta tggcgcctgc accgatccca
      241 tcccacgtca cgacgcctcg cgagcgcgcc cctcgggtgg atgggacaac ggcttggtag
      301 gacagaattc tgagaacgtc aaggtatgtt ttctacgcga ggtcgcgggc gatggtggcg
      361 gcggcgttgt ggccgggggc tcccgtgacc ccgccgcccg ggtgggcgcc ggagccgcag
      421 tggtacaggc cgcgcaaggg cccgcggtag tcggcgtggc cgagcatcgg ccgcgccgag
      481 aagagctggt cgagcgacag agcgccgtgg aagatgtcgc cgcccgtgag cccgaacacg
      541 cgttcgaggt cgagcgggct caaggcctgg cgggcgatga cgctcgcctt gaaccccggc
      601 gcgtagcggt cgacggtctc gatcatgacg tcggcgacct cgtcgcggca ctcgtcccac
      661 gagcgcccgt ccggcagatc cggagcgacg tgctggcaga acaggctcgc cacgtgccgg
      721 cccggcggcg cgagggtgtc gtcgacggtc gaggggatga gcatctcgac gaccggctcc
      781 cggctccagc cgtggcggcg cgcgtcgtca taggcgcggt ccatgtaggc gaggctcggg
      841 gcgatgatga tgcccgacgt gtggtggtcg gcgaggtcac ggccgggcag gcaggtgaag
      901 ctcggcagct cggacagcgc gacgttcatg cggaacgtcc cggagccgca gcgccagcgc
      961 cgcatgcgcg ccaggaattc agggcggagc gccgcctcgg gaatcatgcg ggtgtacagg
     1021 agcttcgggt tgacgttcgc ggcgacggcg cgcgcccgga tcgtgcgccc gtcactcaag
     1081 cgcacgccga ccgcgccgcc gcgctccgtc agcacctcat ccacgggagc accggtctcg
     1141 atctcgacgc ccgccgcccg gcccgcgctg gccatggcct gcgtgatcgc gcccatgccg
     1201 ccgatggcat ggccccacac gcctttcttg ccgttcacct cgccgaaggc gtgatgcagg
     1261 aagacgtaag cggtgccggg cgcgtagggg ctcgcgtagt tccccacgac ggcgtcgaag
     1321 ccgagcagcg ctttgatgcc gtcgccctcg aaccagccgt cgaggtagtc cgcggccgac
     1381 ttggtgaaga ggtcgaggag cgcgcggcgc tgctccatcg ggagccggct catggtgccg
     1441 ccgagagtcg ccgcgcgcac cacctcggcg gcggcccgga tgccgaaccc ctcgaccacg
     1501 ttcggcggcg gcttcagcat caggccgcgc aggacgtcgg cgaccgcgcc gagctcggcg
     1561 ctgaacgcct cccagcgctc ggcgtcccgc gcgctgaact tggcgatctc gtctctggtg
     1621 cggcccccgc cagtgaggag gtagcgccca tcgagggtcg gcaggaagtt ctgggcccgg
     1681 cgctcgacga tgcgcaggcc gtgctcgtgc aggcgcaggt cctggatcac cttgggcgcc
     1741 agcaggctga ccgtgtaggc cgcaaccgag ttgcggaaac ctggatggaa ctcttccgta
     1801 acggccgcgc cgccgaccac gtcgcgccgc tcgacgactt tgactttgag gcccgcaagg
     1861 gcgaggtagg cggcgcaggt caggccgtta tggccggctc cgacgaccac cacatcatag
     1921 gttgacgaca ggtcggccac ggtgtggagc tatcctgagc gcggacacac gagggtcccg
     1981 taaacgcacc tttcagggga actttcaacc tcatggcgga acgggtcatc aaggacgacc
     2041 agaagcgcgt ctatttcgat tgcaacaagt gccccgcgtt ctgctgctcc gtctacgagc
     2101 gcgtcgaggt gacgaaacgc gacctcaacc gcctcgccag gcatttcggc gtcacgcccg
     2161 agcaggcgaa gcgccggtac acgcggcagc gcgagggcca gcgcgtgctg aagcgcgtcg
     2221 aggacgagat cttcaacgag gtctgcatgt tcctcgacca gaagacccgc cgctgcggca
     2281 tctatctcgg ccggcctgcc gtctgccgca cctaccccgc ccgctcgcgc tgcgcctact
     2341 acgacctcct gcagttcgag cggaagcagc agggcaacga gaacgtggtg cccgtggtca
     2401 ccatcacctt ccgtgaggtc gaggaggagg tggtcggggg tgaggacggt cccgaggtgg
     2461 tcgaggagtg gggccgcgac gtcacgcagg aggtcggcgg cgccaagaag gatcccgacg
     2521 cggtggaggt gcgcgacctc gccgacgccg ccgcgccgct cctcaatccc acgcagaagc
     2581 cggacgcctg atcaccacgc cctcgttgga gcgcagtgtc ggcggcatgc cctgccccga
     2641 ggggcggtcc agggaggtcg agagcagcag ggtcccctcg catgcgcgat cgagcggctg
     2701 ctcgtcggcg ctgagattca gggccacaag caggcgcgcg tcgtcatgcc ggcgttcgta
     2761 ggcgagcacg gccgcgtccg ccgaaaccgg gacgtagcgg ccgacgctca aggccggctc
     2821 ggcgcggcgc agggccaaga gcgcgcgata gagcgacagc atggagcgcg ggtcggcggc
     2881 ctgcgctgcg acattcatgg ccgcgtagtc cgaggcgagc ggcagccaag gctcgccggt
     2941 ggtgaagccg gcgttggggc ttgggtccca ctgcatcggc gtgcgctccg gatcgcggcc
     3001 gaggccgaga cccgggacgt tcctctccca cggatcctgt accttctcgg gcgggatcgg
     3061 cacgtcggtc atgccgatct cctcgccctg gtagatggtc ggagtgccgc gcagggtgag
     3121 cagcagcatg gccgcgatgc gcgcctgcgc cggcccgagg cgtgtcgcca cccttgaccg
     3181 gtcgtgattg ccgagcaccc agttgggcca cccgcccggc ggcagagccg cctcgtaggc
     3241 atcgatcagg gcggagatgg ccacgggctg ccaggcgctg gcgatcaggt ggaagttgaa
     3301 cggcaggtgg aagcccgtca ggtcgacgcc gtagtaggcc atgaggcggt cgatcggcag
     3361 gtaggcctcg ccgatcatca cgcggccgga gtactcgtcg gcgacgtggc gcatggccgc
     3421 gatggcctcg tgcacctcgg gctggtccat ggtgtaggcc cggatcaggc tgcgggcggg
     3481 cgacatcccc gggcgccagt ccgggtttcg cggattgtcg atcaactcct ccgactcgat
     3541 gagctggtgg atggcgtcga cccggaaccc atcgacgccg cgctcgaacc agaagcgcag
     3601 gacatcgagc atcgccgcgc ggacgtccgg gttgcgccag ttcaggtcgg gctgctcgtt
     3661 caggtaggcg tggtaatagt gctggccggt gccctcgtcg aaggtccacg ccggcccgcc
     3721 gaactcgctg acccagttcg tcggaggcga gccgtccggc ttgccgtcgc gccagatgta
     3781 ccaatcccgc ttcgggttgg tgcgcgacga gcggctctcg atgaaccagg gatgccggtc
     3841 cgaggtgtgg ttcggaacgt aatcgaggat caccttgagg ccgcggccgt gggcggc
//
LOCUS       DASQWN010000562         3643 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_150838, whole genome shotgun sequence.
ACCESSION   DASQWN010000562 DASQWN010000000
VERSION     DASQWN010000562.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 3643)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3643)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3643
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_150838"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..827)
                     /locus_tag="VE686_10570"
     CDS             complement(<1..827)
                     /locus_tag="VE686_10570"
                     /inference="COORDINATES: protein motif:HMM:NF012925.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 16 protein"
                     /protein_id="HYY84927.1"
                     /translation="MAIDPNNLAGTATLTFHDEFSSGPLNTSVWGTGYPWGAANGSTN
                     AGNGEAQWYINANYAPTANLGTYTVRDGVLDIKEAPADAATQSLINGYKYTSGMINSA
                     QSFSQTYGYFEMRADIPDGKGMWPAFWLLPTNGGWPPELDVMEVVGTAPNNLVTSVHW
                     DANGHKMVNHDTTVPGLSSGGMHTYGVDWQPDTITWYLDGAKVFSAATPADMHQPMYM
                     LANLAAGGAWAGAPDGSTNHMEIDYIRAYASMPGGGTPPPSDAPATPTPTPTPTPTPT
                     "
     gene            complement(1046..2356)
                     /locus_tag="VE686_10575"
     CDS             complement(1046..2356)
                     /locus_tag="VE686_10575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019904405.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0030253 - protein secretion by the type I
                     secretion system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HlyD family type I secretion periplasmic adaptor
                     subunit"
                     /protein_id="HYY84928.1"
                     /translation="MNRLSHDTAQAVRRHILGGTIGAAALVCGVGGWAATAEFSGAVI
                     TSGFLVVESDVKKVQHPTGGVVGELLVKEGDQVAAGDVLVRLDETVARANLAIVTKAL
                     DESAARRARLEAERDGATAITFLPDVLTRAALEPEVAWLVAGERKLFETRHAAREGQK
                     SQLSERIGQLEEQIQGLDEQIAAKTRELELINQELGGVRELWQKKLVPIQRVMVLERE
                     LVRIQGERGTLVSSVAQCKGKITETRLQLLQIDQDLRTEVSRELAEIRGKVSELVERK
                     ISAEDLLRRVDIRAPQDGTVHQLAVHTVGGVVGAGETVMMVVPAADHLAVEAKLAPQD
                     RDQTHLGQRATLRFSAFNQRTTPEIDGEVSRISADITTDPRTGQGYYTTRLKVPPQEV
                     ARLGNVKLAPGMPVEVFVKTQARTVLSYFTKPLTDQVARAFREK"
     gene            complement(2353..>3643)
                     /locus_tag="VE686_10580"
     CDS             complement(2353..>3643)
                     /locus_tag="VE686_10580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019904404.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0030253 - protein secretion by the type I
                     secretion system [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="type I secretion system permease/ATPase"
                     /protein_id="HYY84929.1"
                     /translation="VWIGVAALVGALMLVALTAVAEMRARRPAREATAAASMRIYVAD
                     AARRNAESVKAMGMGPDVSVIWDRANAPHRSSQESASAASTGLGSISRVLRIALQSAV
                     LGIGAYLVIRQEATAGVIIASSILTARALTPVDQAVGNWKSFTAARQSWNRLVTLLAA
                     VPAKPEAMTLPEPREKLTIEAAAVAPPAVPRLTAADVTFSLTAGQGLGIIGPSASGKS
                     SLARLLVGAWPAVRGAVRLDGSALEDWDRDQLGRYVGYVAQEIELFPGSVAANIARFR
                     RDATADEVIEAAKAANVHEMIQALPRGYETDIGEHGSDLSAGQRQRIALARALYGRPF
                     LVVLDEPNSNLDSEGEHSLTQAMLGVRRRGGIVVVIAHRPSALAAVDHVLVMKDGRMH
                     SFGTKDEIFAHTLKAVTPGQAGGAPAQAPRAVGGHRA"
BASE COUNT          518 a         1235 c         1230 g          660 t
ORIGIN      
        1 gtgggagtgg gagtgggagt gggagtcggc gtcggggtgg cgggggcgtc gctcggggga
       61 ggcgtgccgc cgcccggcat cgacgcgtag gcgcggatgt agtcgatctc catgtggttg
      121 gtgctgccgt ccggtgcgcc cgcccaggct cctccggctg ccagattggc gagcatgtac
      181 atcggctgat gcatgtcggc cggggtggcc gccgaaaaca ccttggcacc gtcgaggtac
      241 caggtgatcg tgtcaggctg ccagtcgacc ccgtaggtgt gcatcccgcc gctcgacagg
      301 ccgggcacgg tcgtgtcgtg gttgaccatc ttgtggccgt tggcgtccca gtggaccgac
      361 gtgacaagat tgttcggcgc ggtcccgacc acctccatga cgtcgagctc gggcggccag
      421 cccccgtttg tcggtaggag ccagaacgcg ggccacatgc ccttgccgtc cgggatgtcg
      481 gcgcgcatct cgaagtagcc gtaggtctgg ctgaaggact gcgccgagtt gatcatgccg
      541 gacgtgtact tatagccgtt gatcagggac tgcgtggccg catcggccgg ggcttccttg
      601 atgtcgagca cgccgtcccg gactgtgtag gtgccgaggt tcgccgtcgg ggcgtagttg
      661 gcgttgatgt accattgggc ctcgccgttg ccggcgttcg tgctgccgtt tgcggcgccc
      721 cacgggtatc cggttcccca gacggacgta ttgaggggcc cggagctgaa ctcgtcgtgg
      781 aacgtcagcg ttgcagtccc ggctagattg ttcggatcga ttgccattgt tttcctcatc
      841 gggccacgcc cctgtgaagg acgaggcctt gctgatgctg tattgaagtc acccgccacg
      901 caggacgcgt gccgttgtca ctttccgctg gctccggcgt tgcaccggac gcgtttcaag
      961 tcgtttgctc tcactcacct aattcgacat cgcgcctccc acgacgtgac ttggaatact
     1021 gccgcgcccg gcgccgcgat ctcgctcact tttcgcggaa agctctggcg acctggtcgg
     1081 taagaggctt ggtgaagtag gaaagtaccg tccttgcctg cgtcttgacg aagacctcga
     1141 ccggcatgcc cggggcgagc ttcacgttgc ccagccgcgc gacctcctgt gggggcactt
     1201 tcagccgggt cgtgtagtag ccctgccccg ttctcggatc ggtggtgatg tcggccgaga
     1261 tccgcgagac ctcgccatcg atctcgggcg tggtccgctg gttgaaggcc gagaacctca
     1321 gcgttgcgcg ttggcccaag tgggtttggt cgcggtcttg gggcgccagc ttcgcctcga
     1381 cggcgaggtg gtcggcggcg ggcacgacca tcatcacggt ctcgccggcg cccacgaccc
     1441 ccccgaccgt atgaacggcg agctgatgga ccgttccgtc ctgcggtgct cggatgtcga
     1501 ccctcctcag gaggtcctcc gcggagatct tgcgctcgac gagctcggag accttgccgc
     1561 ggatctccgc gagctccctg gacacctcgg tccgcaggtc ctggtcgatc tggagcagct
     1621 gcaggcgcgt ttcggtgatc tttcccttgc actgggcgac ggaggagacc agcgttccgc
     1681 gctccccctg aatgcggacc agctcgcgct cgagcaccat cacccgctgg ataggcacga
     1741 gcttcttctg ccaaagctcg cgcacgcccc cgagctcctg attgatgagc tcgagctctc
     1801 gtgtcttcgc cgcaatctgc tcgtcgaggc cctggatctg ttcctcgagc tgtccgatgc
     1861 gctccgacag ctgcgacttc tgtccctcgc gcgcggcgtg cctcgtctcg aacagcttcc
     1921 gttcgcccgc gacgagccac gctacctcgg gctccagggc ggcgcgcgtc agaacgtcgg
     1981 ggaggaacgt gatggcggtg gcgccgtccc gctcggcttc gaggcgtgcg cgcctcgcgg
     2041 ccgactcgtc gagcgccttc gtgacgattg cgaggttcgc ccgcgcgacg gtctcgtcga
     2101 gacggacgag cacgtcgccg gcagcaacct ggtcgccctc cttgacgagc aactcgccga
     2161 ccaccccgcc ggtcgggtgc tgcacctttt tcacgtcgga ctccacgaca aggaaccccg
     2221 aggtgatcac cgcacccgag aactcggctg tcgcggccca tccgccgacg ccgcacacca
     2281 gggcggccgc cccaatggta cccccgagaa tgtgcctgcg gacggcttgc gccgtgtcgt
     2341 gcgagagacg gttcatgccc tgtgccctcc gacggcgcgg ggggcctgcg ctggcgctcc
     2401 cccggcctgc ccgggcgtga ccgccttcaa cgtgtgtgcg aaaatctcat ccttcgtccc
     2461 gaaggagtgc atccgcccgt ctttcatcac cagcacatga tcgaccgcgg cgagcgcgct
     2521 cggccggtgg gcgatgacca cgacgatccc gcctcgacgg cggacaccga gcatcgcctg
     2581 ggtgagagag tgctcgccct cgctgtcgag gttcgagttc ggctcgtcga gcacgaccag
     2641 gaacggcctg ccgtacaggg cccgcgcgag cgcgatccgc tgacgctgac ccgccgagag
     2701 gtccgagccg tgctcgccga tgtcggtttc gtaaccgcgc ggcagggcct ggatcatctc
     2761 atggacgttc gccgccttcg ccgcctcgat cacctcgtcg gcggttgcgt cgcggcggaa
     2821 tctcgcgatg ttcgccgcca cgctgcccgg gaaaagttcg atctcctgcg ccacgtatcc
     2881 gacgtatcgg ccgagctggt cccgatccca gtcctccagc gccgagccgt cgagcctgac
     2941 ggcgccccga acggccggcc acgcgccgac caggaggcgg gcgagcgacg acttgccgga
     3001 ggcgctcggg ccgatgatcc cgagcccctg ccctgccgtg agggagaagg ttacatcggc
     3061 agcggtaagc cgcggtacgg cgggtggcgc cacggcggca gcttcgatgg tcagcttctc
     3121 gcgcggctcg ggcagggtca tggcttcggg ctttgccggc acggcggcga ggagcgtgac
     3181 gaggcgattc cagctttggc gcgccgccgt gaagctcttc cagttgccga cagcctggtc
     3241 gacgggcgtg agagcccgcg cggtcaggat cgagctggcg atgataaccc ccgccgtcgc
     3301 ctcctgtcgg atcaccaggt aggcaccgat ccccaacacg gccgactgca aggcgatgcg
     3361 cagaacccgc gagatcgacc cgagcccggt agaggccgcg gacgcagatt cctggctcga
     3421 cctatggggc gcgttggcgc ggtcccatat caccgagaca tccgggccca ttcccatggc
     3481 cttgacgctt tcggcgttcc tacgcgccgc gtcggcgacg tagatgcgca tgctggctgc
     3541 ggcggtcgcc tcgcgtgcgg ggcggcgagc gcgcatctca gccacggcgg tgagcgccac
     3601 aagcatgagc gcgccaacca gtgcggccac tccgatccag acg
//
LOCUS       DASQWN010000563         3377 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_948262, whole genome shotgun sequence.
ACCESSION   DASQWN010000563 DASQWN010000000
VERSION     DASQWN010000563.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 3377)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3377)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3377
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_948262"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..316)
                     /locus_tag="VE686_10585"
     CDS             complement(<1..316)
                     /locus_tag="VE686_10585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009490933.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal phosphate-dependent aminotransferase"
                     /protein_id="HYY84930.1"
                     /translation="MMKAAAQTPVPALAGRLERVAPFLAMDVLAAAAVKERRGESVVH
                     MEVGQPSAPAPRPAIEAARAALDAGRIGYTEALGIAPLRERIARHYRDAYGVAIAPER
                     VVV"
     gene            492..1259
                     /locus_tag="VE686_10590"
     CDS             492..1259
                     /locus_tag="VE686_10590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017484470.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DsbA family protein"
                     /protein_id="HYY84931.1"
                     /translation="MFPTFRAAALAGLMMAAAPFAQAQAPQFSPEQRRAIGEVVKEYL
                     LQNPEVLQEAIVELERRQQDAQKVAQASALKDSREALVNSPHGNLVGNPQGDVTLVEF
                     FDYNCGYCKRALSDLRTLMKADPKLRVVLKDFPVLGPDSVESARVALAVKQQLKGDKL
                     FDYHARLIETRGKVNGERAMAVAKEAGVDMARLAKDMEGPEVRAALQENMSLADKLGL
                     TGTPAFVIGDEVISGAVGVEPIRRTLAGVRQCGKAVC"
     gene            complement(1436..2203)
                     /locus_tag="VE686_10595"
     CDS             complement(1436..2203)
                     /locus_tag="VE686_10595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011581393.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HYY84932.1"
                     /translation="MPHGTFVWYELMAKDAQAAERFYAEVVGWNMRDSGMPGGRYTIV
                     SAGEAGVGGIMGFPPEGCPPGASPGWTGYIAVDDVDAYAGRVKAAGGSILRDADDIPG
                     VGRFAVAADPYGAPFVLFRPTSTEAPPRPAPGTPGTIGWHELHAGDGQAAFAFYSDLF
                     GWQKDQAMDMGPMGTYQLFKAGAEPIGAMMTKPPQIPAPFWLYYFVVEAIDAAHARVT
                     GNGGEVLHGPMEVPGGSWIVQCRDPQGAMFALVAPRR"
     gene            complement(2234..2980)
                     /locus_tag="VE686_10600"
     CDS             complement(2234..2980)
                     /locus_tag="VE686_10600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018327952.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin family protein"
                     /protein_id="HYY84933.1"
                     /translation="MQHHPVVSREEWLVARKALLLREKEATHLRDKINAERLALPWVK
                     VDKPYVFDTPSGERTLAELFAGRSQLLTYHFMLAPGWDAGCTGCSFLADHFDGALPHL
                     EHHDVTLTAVSRAPLSEIEAYKARMGWRFPWASSFRSDFNRDFHVSFSEAELGTGEVF
                     YNFTKTPAKQAAPELPGLSAFVRDEAGQVFHTYSGYTRGLEEIIGTLMILDRAPLGRN
                     ETSTMSFVRRHDEYEPAPQAKACCAAPAAA"
     gene            3049..>3377
                     /locus_tag="VE686_10605"
     CDS             3049..>3377
                     /locus_tag="VE686_10605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018235642.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family transcriptional regulator"
                     /protein_id="HYY84934.1"
                     /translation="MSKPATPPFETTLRVRDACLCLHTQRAARALGRRFDEALRPHGL
                     TSGQFSLLMSLNRPEAPNMGAVASILAMDRTTLTAALKPLERRGLVTVAIDPADRRGR
                     RLTLTAAG"
BASE COUNT          494 a         1206 c         1191 g          486 t
ORIGIN      
        1 tgaccaccac ccgctccggc gcgatggcga ccccgtaggc gtcccggtaa tggcgcgcta
       61 tgcgctcgcg cagcggcgcg atgccgagcg cttcggtgta gccgatccgg ccggcgtcga
      121 gcgccgcccg ggcggcctcg atagcggggc gcggcgccgg agcggagggc tggccgacct
      181 ccatatgcac cacgctctcg ccccggcgct ccttcacggc ggcggcggcg agcacgtcca
      241 tggcgaggaa cggcgccacg cgctcaagac gcccggcgag ggctgggacg ggcgtctgcg
      301 cggcggcttt catcatgcgc agggtcagta ggcgcttggc cccccgggct caagccaacg
      361 aagccgtgaa ttgacgacag cgggccccgg cccgcctagt atgaggcgag acagacgccg
      421 caatgctttc tcaatgccgc cgcgatccaa tgcgacgagc cttgccgagc acataaccag
      481 gacgaccccg catgtttccg accttccgcg ccgcggccct tgccggcctg atgatggccg
      541 ccgccccctt cgcgcaggcg caggcgccgc agttcagccc cgagcagcgc cgggccatcg
      601 gcgaggtcgt caaggagtac ctgctccaga acccggaggt gctgcaggag gcgatcgtcg
      661 agctcgagcg gcgccagcag gacgcgcaga aggtcgcgca ggcgagcgcc ctcaaggact
      721 cgcgcgaggc cctggtgaac tcgccccacg gcaacctcgt cggcaacccg cagggcgatg
      781 tcaccctggt cgagttcttc gactacaact gcggctactg caaacgcgcg ctgtcggacc
      841 tgcgcaccct catgaaggcc gacccgaagc tgcgggtcgt gctgaaggac ttccccgtgc
      901 tcgggcccga ctcggtcgag tcggcgcgcg tcgccctcgc ggtgaagcag cagctcaagg
      961 gcgacaagct gttcgactac cacgcgcgcc tgatcgagac gcgcggcaag gtcaacggcg
     1021 agcgcgccat ggcggtcgcc aaggaggccg gcgtcgacat ggcccgcctc gccaaggaca
     1081 tggaggggcc cgaggtgcgc gcggccctcc aggagaacat gtcgctcgcc gacaagctcg
     1141 ggctcaccgg caccccggcc ttcgtgatcg gcgacgaggt catctcgggc gccgtcggcg
     1201 tcgagcccat ccgccgcacc ctcgcgggcg tccgccagtg cggcaaggcg gtctgctgac
     1261 ggaaggcggt atccctcccc gcgaggggag ggccgagtcg cgcctgcagg cgcgaccggg
     1321 gtggggcgga agccctcact cgaacgttca ggcaccgagg ttttcgcccc acccgggcgg
     1381 gcgctgacgc gcccgtctcc gccctcccct cgcggggagg gataaggcag ggcgttcagc
     1441 gcctgggggc gacgagggcg aacatggcgc cttgcgggtc gcggcactgg acgatccagc
     1501 tgccgcccgg gacctccatg gggccgtgca gcacctcgcc gccgttgccg gtgacccggg
     1561 cgtgggcggc atcgatcgcc tcgaccacga agtagtacag ccagaacggc gccgggatct
     1621 gcggtggctt cgtcatcatg gcgccgatcg gctcggcgcc ggccttgaag agctggtagg
     1681 tgcccatggg acccatgtcc atggcctggt ccttctgcca gccgaacagg tcggaataga
     1741 aggcgaaggc cgcttgtccg tcgccggcgt gcagctcgtg ccagccgatg gtgcccgggg
     1801 tgccgggcgc aggccgcggc ggcgcctccg tgctcgtcgg cctgaacagg acgaagggag
     1861 cgccgtaggg atcggccgcg acggcgaagc ggccgacgcc ggggatgtcg tcggcgtcgc
     1921 gcaggatcga cccgcccgcc gccttcacgc gccccgcgta ggcgtcgacg tcgtcgacgg
     1981 cgatgtagcc ggtccatccg gggctggcgc ccggcgggca tccctcgggc ggaaagccca
     2041 tgatgccgcc gacgccggcc tcgcccgccg acacgatggt gtagcgcccg cccggcatgc
     2101 cggagtcgcg catgttccag ccgaccacct cggcatagaa gcgctcggcc gcctgcgcgt
     2161 ccttggccat cagttcgtac cagacgaatg tcccgtgggg catggcgact tccttttttc
     2221 gcgttcttga tgatcaggcc gccgccgggg cggcgcagca cgccttcgcc tggggcgccg
     2281 gctcgtactc gtcgtggcgg cgcacgaagc tcatggtgct cgtctcgttg cggccgagcg
     2341 gcgcgcggtc gaggatcatc agcgtgccga tgatctcctc gagcccgcgc gtgtagcccg
     2401 agtaggtgtg gaacacctgc cccgcctcgt cgcggacgaa ggcgctgagg cccggcagct
     2461 ccggtgccgc ctgcttcgcc ggcgtcttgg tgaagttgta gaacacctcg ccggtcccga
     2521 gctccgcctc gctgaaggag acgtggaagt cgcggttgaa atcgctgcgg aacgacgacg
     2581 cccacggaaa gcgccagccc atgcgggcct tgtaggcttc gatctcggag agcggggcgc
     2641 gcgacacggc cgtgagggtc acgtcgtggt gctcgaggtg cggcagcgcg ccgtcgaaat
     2701 ggtcggcgag gaacgagcag ccggtgcagc ccgcgtccca gccgggcgcc agcatgaaat
     2761 ggtacgtcag gagctggctg cgcccggcga acagctcggc gagcgtccgc tcgccggaag
     2821 gcgtgtcgaa cacgtaaggc ttgtcgacct tgacccaggg cagcgccaga cgctcggcgt
     2881 tgatcttgtc gcgcaggtgc gtcgcctcct tctcgcgcag gaggagcgct ttgcgcgcga
     2941 cgagccactc ctcgcgcgag accaccggat ggtgctgcat gtcccctctc ctacttaggc
     3001 ctgtgcccgg ccttgacaag ttgcgttgat atcaacattc ctgagttgat gtcaaagcct
     3061 gcgacccctc ctttcgagac cacgctgcgg gtccgcgacg cctgcctgtg cctgcacacg
     3121 cagcgcgccg cccgggcgct ggggcggcgc ttcgacgagg ccctgcggcc gcacgggctg
     3181 acgagcggcc agttctcgct cctgatgtcc ctcaaccggc cggaggcccc caacatgggc
     3241 gccgtcgcct ccatccttgc catggaccgc acgacgctga cggccgccct gaagcccctc
     3301 gagcgccgcg gcctcgtcac cgtcgccatc gatcccgcgg accggcgcgg gcgccggctc
     3361 acgctcaccg cggcggg
//
LOCUS       DASQWN010000564         2371 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_948403, whole genome shotgun sequence.
ACCESSION   DASQWN010000564 DASQWN010000000
VERSION     DASQWN010000564.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2371)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2371)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2371
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_948403"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1000)
                     /locus_tag="VE686_10610"
     CDS             complement(<1..1000)
                     /locus_tag="VE686_10610"
                     /inference="COORDINATES: protein motif:HMM:TIGR01187.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HYY84935.1"
                     /translation="MPTGPANSPLIRFERVAKRFGDVTAVDGVSLDIQEGEFFCLLGP
                     SGCGKTTLMRMLAGFEEPDAGRVVLGGEDLAGTPPHRRPVNMMFQSYALFPHLSVSAN
                     IAFGLKQEGRRKAEIAERVAEMLRLVQLEPCATRYPHQLSGGQRQRVALARALAKRPR
                     VLLLDEPLGALDRKLREETQFELKEMQARLGTTFLVVTHDQQEAMAMADRIAVMDRGR
                     VVQVGSPSEIYEAPVSRFVAQFLGDVNLLEGRVRGREGELWVVEGPAAPEGLLVDGAA
                     TGLAQGQEVAVAVRPEKMVLHREPPTGWGNLLSGEVADLSYLGDWSVVRVRLDTGGT"
     gene            complement(1159..1920)
                     /locus_tag="VE686_10615"
     CDS             complement(1159..1920)
                     /locus_tag="VE686_10615"
                     /EC_number="3.5.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011503040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016810 - hydrolase activity, acting on
                     carbon-nitrogen (but not peptide) bonds [Evidence IEA];
                     GO_function: GO:0017168 - 5-oxoprolinase (ATP-hydrolyzing)
                     activity [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="5-oxoprolinase subunit PxpA"
                     /protein_id="HYY84936.1"
                     /translation="MRIDLNSDMGEGFGPWRMGDDEAMLAIVTSANVACGWHAGDPLI
                     MHRTAEVAKERGVAIGAHPGFGDLWGFGRRVILGDSPAEIEKMIAYQIGAFQGVAALA
                     GHRVTFVKTHGSLGNMSNDDDELALAVGRAIKGVDRDLVYVVMPGLATERAAERLGLR
                     AAREVFADRTYDDGGNLTSRNKPGAVIHDAREAAERVVRMVEDGAITTVSGKRIKVAI
                     DTICVHGDKPPAVEMARKVRARLEEAGATLAPFAR"
     gene            complement(2104..>2371)
                     /locus_tag="VE686_10620"
     CDS             complement(2104..>2371)
                     /locus_tag="VE686_10620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007562839.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY84937.1"
                     /translation="AASKPENEGLPPVATLQPAQTAPAAPAAPAAPAPEAAATTENDS
                     RIDDVIASLSQALGAADETPEQQPRQGEAVEVERWTSRLRRSQG"
BASE COUNT          339 a          851 c          824 g          357 t
ORIGIN      
        1 ccgtcccgcc ggtgtcgaga cggacccgca ccacagacca atcgccgagg tagctcaagt
       61 ccgccacctc gcccgacaga agattgcccc aaccggtggg cggctcgcgg tgcaggacca
      121 tcttctccgg gcgcaccgcc accgcgacct cctggccctg cgccagcccc gtcgcggcac
      181 cgtcgaccaa gagtccctct ggcgcggcgg gcccttcgac tacccagagc tcgccctctc
      241 ggccgcgcac gcggccctcg aggaggttca cgtccccaag gaactgcgcc acgaaacgcg
      301 acaccggcgc ctcatagatc tcgctcgggc tccccacctg cacgacccgg ccccggtcca
      361 tgaccgcaat acggtcggcc atcgccatgg cctcctgctg gtcgtgggtg acgacgagga
      421 aggtcgtccc gagccgcgct tgcatttcct tcagctcgaa ctgcgtctcc tcgcggagtt
      481 tccggtcgag cgctccgagg ggctcgtcga gcaggagcac cctcgggcgc ttggcgaggg
      541 cgcgcgcgag cgccacgcgc tgacgctgcc cgcccgagag ctggtgggga tagcgggtgg
      601 cgcagggctc gagctgcacg agccgcagca tctcggcgac ccgctcggcg atctcggcct
      661 tgcggcggcc ctcctgcttc aggccgaacg cgatgttggc agacacgctg aggtgcggga
      721 acagggcgta ggactggaac atcatgttga cgggccgccg gtgcggcggg gttccggcaa
      781 ggtcctctcc gcccagcacg acgcgcccgg cgtcaggctc ctcgaagccc gcgagcatgc
      841 gcatgagggt cgtcttgccg cagcccgagg gcccgagcag gcagaagaac tcgccctcct
      901 ggatgtcgag gctgacgccg tcgacggcgg tgacgtcgcc gaagcgcttg gcgacgcgct
      961 cgaaccggat cagcggcgag tttgcgggcc ctgttggcat ctctcggacg ggggacaaca
     1021 ggttggacac gtcgcctcgg cagcctcgtg acaaacagtc ggaggcttag ccgcatagct
     1081 accactgaac aaccgccggc aacgcgagtc cgagccggat gctaccctcc ctcgggccgg
     1141 cgatagagac gagcggcgct acctcgcgaa gggcgcgagc gtcgcgccgg cctcctcgag
     1201 gcgagcgcgc accttgcgcg ccatctccac ggcaggcggc ttgtcgccgt ggacgcagat
     1261 ggtgtcgatg gcgaccttga tgcgcttgcc cgacaccgtc gtgatggcgc cgtcctcgac
     1321 catgcgcacg acccgctcgg cggcctcccg cgcgtcgtgg atcacggcac cgggcttgtt
     1381 gcggctcgtc aagttgccgc cgtcgtcgta ggtgcggtcc gcgaagacct cccgggcggc
     1441 gcggagccct aagcgctcgg ctgcgcgctc cgtcgcgagc ccgggcatga ccacgtacac
     1501 gaggtcgcgg tcgacgccct tgatggcgcg gccgaccgcg agcgcaagct cgtcgtcgtc
     1561 gttcgacatg ttgccgagcg agccgtgcgt cttgacgaag gtgaccctgt gcccggcgag
     1621 cgcggcaacg ccctggaagg cgccgatctg gtaggcgatc atcttctcga tctcggcggg
     1681 gctgtctccg aggatgaccc ggcggccgaa gccccacagg tcgccgaacc cggggtgcgc
     1741 cccaatggcg acgccgcgct ccttcgcaac ctcggcggtc cggtgcatga tgagcgggtc
     1801 gccggcatgc cagccgcagg cgacgttggc ggacgtgacg atggcgagca tggcctcgtc
     1861 gtcgcccatg cgccacggcc cgaagccctc gcccatatcg gagttcagat cgatgcgcat
     1921 cggcgagcct ctccagcgac gccgattgcg cgccgcgagc tttaatcgat cgttaacccc
     1981 gccggaccat tgtcaacatt gagtcgcgga agcggcccgc aaacgtgaag gggagaggca
     2041 cggatgtact gcctctcccc ttcgtcgttt gccaccgccg ccggctgacg ccagcgtcgg
     2101 gcttcagccc tgcgagcggc gcaggcgcga cgtccagcgc tcgacctcga cggcctcgcc
     2161 ctgacgcggc tgctgctcgg gcgtctcgtc tgcggcgccg agcgcctgcg acaggctcgc
     2221 gatcacgtcg tcgatgcggg agtcgttctc ggtcgtcgcg gcggcttcgg gcgccggagc
     2281 ggcgggtgca gcgggggcgg ccggcgccgt ctgggcgggc tgtagcgttg cgaccggggg
     2341 gagcccctcg ttctcgggct tcgaggcggc c
//
LOCUS       DASQWN010000565         2577 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_547104, whole genome shotgun sequence.
ACCESSION   DASQWN010000565 DASQWN010000000
VERSION     DASQWN010000565.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2577)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2577)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2577
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_547104"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..2277
                     /locus_tag="VE686_10625"
     CDS             <1..2277
                     /locus_tag="VE686_10625"
                     /EC_number="1.1.1.40"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009763470.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004470 - malic enzyme activity [Evidence
                     IEA];
                     GO_function: GO:0004471 - malate dehydrogenase
                     (decarboxylating) (NAD+) activity [Evidence IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADP-dependent malic enzyme"
                     /protein_id="HYY84938.1"
                     /translation="RPPRRSRPTFTDQEALQFHAQGRPGKLEVVATKPMATQRDLSLA
                     YSPGVAVPVLAIAENPALAFDYTAKGNLVAVISNGTAILGLGNRGALASKPVMEGKAV
                     LFKRFADIDAFDLEVGTEDADEFINCVRYLAPTFGGVNLEDIKAPECFIIEERLRELM
                     DIPVFHDDQHGTAIIAAAGLINALHLTGRDMRDTKLVVNGAGAAGIACLDLLKALGFK
                     PANVLLCDTKGVVYDGRREGMNQWKSAHAVGTSARTLADAMRGADAVFGLSAKGAFTD
                     DMIRSMAANPIIFAMANPDPEITVEEVAAIRDDAIMATGRSDYPNQINNVLGFPYIFR
                     GALDVRATTINMEMKIAAAQALAELAREDVPDEVAAAYQGSRPRFGRDYIIPVPFDPR
                     LIHTIPPAVARAAMDTGVARRPIVDARAYKATLSARRDPIAGTLNGIFERVRKFPKRV
                     VFAEGEEEQVIRAATSYVNQGLGTAILVGREDRVMETAEAAGVDLAGREGIEIHNARL
                     SHRNSTYAQFLYERLQRQGFLFRDCQRMINQDRNHFAASMVALGDADAMVTGVTRNQS
                     IALSDVRHVIDAKPGHRVIGVSLCLARGRAVVVADTAIHEMPSAQELAEIAVEAAGVA
                     RRLGYEPRVALLSFTTFGQPKAERSEKIQDAVKILDGMRLDFEYDGDIAADVALNRDL
                     MAAYPFCRLTGPANVLVMPAFHSASISTKLLQEMGGAMVLGPLMVGLDRPVQIVGLGA
                     TDADIVNMAALAAYNIGG"
     gene            complement(2287..>2577)
                     /locus_tag="VE686_10630"
     CDS             complement(2287..>2577)
                     /locus_tag="VE686_10630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003603614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX domain-containing protein"
                     /protein_id="HYY84939.1"
                     /translation="GKVEPGERPEETLIRELHEELGIVVKEPCLAPLTFASHAYDTFH
                     LLMPLYACRRWDGFVQPRERQALKWLRPRDLASYPMPPADEPLIPFLIELLG"
BASE COUNT          417 a          939 c          850 g          371 t
ORIGIN      
        1 cgtccgccgc gccgcagccg cccgaccttc accgaccagg aggcgctgca gttccacgcg
       61 caggggcggc cgggcaaact cgaggtggtc gcgacgaagc cgatggcgac ccagcgggac
      121 ctttcgctcg cgtattcgcc gggcgtggcc gtgccggtgc tcgccatcgc cgagaacccg
      181 gcgctcgcct tcgactacac ggcgaagggg aacctcgtcg cggtgatctc gaacggcacc
      241 gccatcctcg gcctcggcaa ccgcggcgcc ctcgcgtcga agcccgtcat ggaaggcaag
      301 gcggtgctgt tcaagcgctt tgccgacatc gacgccttcg acctcgaggt cggaacggaa
      361 gacgcggacg agttcatcaa ctgcgtgcgc tacctcgcgc cgaccttcgg gggcgtcaac
      421 ctcgaggaca tcaaggcgcc ggagtgcttc atcatcgagg agcgcctgcg cgagctgatg
      481 gacatccccg tgttccatga cgaccagcat gggacggcca tcatcgcggc ggcgggcctc
      541 atcaacgcgc tccacctcac cggccgcgac atgcgggaca ccaagctcgt cgtgaacggt
      601 gccggcgcag ccgggatcgc ctgcctcgac ctgctgaagg cgctcggttt caagcccgcc
      661 aacgtgctcc tctgcgacac caaaggcgtc gtctacgacg gccgccgcga aggcatgaac
      721 caatggaagt cggcccacgc cgtcggcacc tccgcccgca cgctggcgga cgctatgcgc
      781 ggcgcggatg cggtgttcgg cctctccgcc aagggcgcct tcacggacga catgatccgc
      841 tcgatggcgg ccaatcccat catcttcgcc atggcgaacc cggatccgga gatcaccgtc
      901 gaggaggtcg cggccatccg cgacgacgcc atcatggcga cgggtcgctc agactacccg
      961 aaccagatca acaacgtgct gggcttcccc tacatcttcc gcggcgccct cgacgtgcgc
     1021 gcgaccacca tcaacatgga gatgaagatc gccgccgcgc aggcgctcgc cgaactcgcc
     1081 cgcgaggacg tgcccgacga ggtcgcggcc gcctatcagg gctcgcggcc gcgcttcggg
     1141 cgcgactaca tcatcccggt gccgttcgat ccgcgcctca tccacaccat cccgccggcg
     1201 gtcgccaggg cggccatgga cacgggggtg gcgcgccggc cgatcgtcga tgcgcgcgcc
     1261 tacaaggcca ccctctcggc gcgccgcgac cccatcgccg gcacgctgaa cggcatcttc
     1321 gagcgggtgc gcaagttccc aaagcgggtc gtgttcgccg aaggcgagga ggagcaggtc
     1381 atccgcgcgg cgacatccta cgtgaaccag ggcctcggca ccgccatcct cgtcggccgc
     1441 gaggaccggg tgatggagac cgccgaggct gcgggggtcg acctcgccgg tcgcgagggc
     1501 atcgagattc acaacgcgcg cctgtcgcac cgcaacagca cctacgcgca gttcctctac
     1561 gagcgcctgc agcgccaggg attcctgttc cgcgactgcc agcgcatgat caaccaggac
     1621 cgcaaccact tcgcggcctc catggtggcg ctcggcgacg ccgacgccat ggtcacgggg
     1681 gtcacgcgca accagtcgat cgcgctctcc gacgtgcgcc atgtcatcga cgccaagccc
     1741 ggccaccggg tcatcggcgt gtcgctctgc ctcgcgcgcg ggcgtgccgt cgtggtcgcc
     1801 gacacggcga tccacgagat gccgtcggcg caggaactcg ccgagatcgc cgtcgaggcc
     1861 gccggggtgg cgcgccggct cggctacgag ccgcgcgtcg cgctcctgtc gttcacgacc
     1921 ttcggacagc ccaaggccga gcggtcggag aagatccagg acgccgtcaa gatcctcgac
     1981 ggcatgcggc tcgacttcga gtacgacggc gacatcgccg ccgatgtggc gctcaaccgc
     2041 gacctcatgg cggcctatcc gttctgccgc ctcaccggcc ccgcgaacgt gctcgtcatg
     2101 ccggcgttcc actcggcctc gatctcgacc aagctcctgc aggagatggg cggcgccatg
     2161 gtgctcgggc cgctcatggt cggcctcgac cgcccggtcc agatcgtcgg actcggcgcc
     2221 acggacgccg acatcgtcaa catggcggcg ctcgccgcct acaacatcgg cggatgagcg
     2281 gcgcgctcag ccgaggagct cgatcaggaa cgggatcagg ggctcgtcag cgggcggcat
     2341 cgggtaggag gcgaggtcgc gcgggcgcaa ccatttcagc gcctggcgct cgcgcggctg
     2401 cacgaagccg tcccagcgcc gacaggcgta gagcggcatc aggaggtgga aggtgtcgta
     2461 ggcgtggctc gcgaaggtga gcggcgccag gcacggctct ttcaccacga tgccgagctc
     2521 ttcatgcaat tcgcggatca gcgtctcctc gggccgctcc ccgggctcca ctttgcc
//
LOCUS       DASQWN010000566         3733 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_949493, whole genome shotgun sequence.
ACCESSION   DASQWN010000566 DASQWN010000000
VERSION     DASQWN010000566.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 3733)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3733)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3733
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_949493"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..884)
                     /locus_tag="VE686_10635"
     CDS             complement(<1..884)
                     /locus_tag="VE686_10635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019402484.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="homocysteine S-methyltransferase family protein"
                     /protein_id="HYY84940.1"
                     /translation="MSSYRRALPQLTGAPFITDGGLETSLIFLAGQELPCFAAFPLLE
                     TSGGREILRAYFRAYLDVARRRRAGFVLSTPTWRANRDWGARLGYSVEELRRANADSV
                     ALMTELRDEQDTGAPIVIEGVIGPRGDGYRADARMTADDAERYHAPQVEAFRDSDADM
                     VGAFTMTYPEEAIGIARAAAACSLPVAISFTVETDGRLPSGDSLQSTIEQVDAACNGS
                     RPEYYMVNCAHPSHFESVLVPGAAWSDRIRGLRANASTMSHAELDEATELDAGDPQDL
                     GRRYRALRERMPRLCVLGG"
     gene            1120..1353
                     /locus_tag="VE686_10640"
     CDS             1120..1353
                     /locus_tag="VE686_10640"
                     /inference="COORDINATES: protein motif:HMM:NF018294.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1127 domain-containing protein"
                     /protein_id="HYY84941.1"
                     /translation="MSELALSYAPQRTGVIAARLGAAFTSAVRKLRAHRSARQAVKQL
                     SQLDDRMLKDIGFYRTDIIALGSKYGSARRWRS"
     gene            complement(1361..2956)
                     /locus_tag="VE686_10645"
     CDS             complement(1361..2956)
                     /locus_tag="VE686_10645"
                     /inference="COORDINATES: protein motif:HMM:NF012698.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HYY84942.1"
                     /translation="MVRFAFADCELDLPRQELRRAGEVVHVEPQVFDLLVFLIQNKDR
                     IVSKDEILEAVWHGRIVSEAALSSRINAARKAVGDNGHDQGLIRTFHKRGFRFVAEAA
                     EHSQAAELPELAPALTGAAGLEPAELPDASSTGMPSVAVLPFANVTGAPDHEYFAYGL
                     TEDIIRLLGRNRWLRVLTRHATVAYRGKDVDAREVGAALGVRYLVQGSVRKLGDHVRI
                     AAELVSAGNARQLWSEAYEFDLPEIFDVQDSMAKQIAAVVEPELATIEQAIASRKPPE
                     SLDALDCYQRGLWHLWGFTNPGFDEAEVLFRRAIDLEPGLARAHAGLSYVQLQKAFYA
                     TRDDRPALLERGMAAARAAVSFDGRDSLCRCVLGRAYCMHQQYAEAIAELEETIAMNP
                     SFAQGYFALAFTLVWCGRCDEAIALLEQACELSPRDPHLWTFHHCRAVAHFSLGELES
                     AVFFARQACRHPNATSWGYATLASILGHLGELKEAAAAISELLSRKPCYSQGAAHDDF
                     YFCADEAFIDRYLDGLRRAGLPA"
     gene            3131..3454
                     /locus_tag="VE686_10650"
                     /pseudo
     CDS             3131..3454
                     /locus_tag="VE686_10650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012333060.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
BASE COUNT          601 a         1239 c         1282 g          611 t
ORIGIN      
        1 ccgccgagga cgcagaggcg cggcatgcgc tcacgcaagg cgcggtagcg acggccgaga
       61 tcctgcgggt cgccggcgtc gagctccgtc gcttcgtcga gttcggcgtg gctcatcgtg
      121 gaggcgttcg cccgcaggcc gcggatgcga tcgctccacg ccgcaccagg aacaagcacg
      181 ctctcgaaat gcgacgggtg cgcgcagttg accatgtagt actccggcct gcttccgttg
      241 caggcggcgt cgacctgctc gatcgtcgat tgcaagctgt cgccggatgg cagtcgtccg
      301 tcggtctcga cggtgaagga gatcgcgact ggcaagctac aagccgctgc cgcacgggcg
      361 atgccgatcg cctcctccgg ataggtcatc gtgaacgcgc cgaccatgtc ggcgtcgctg
      421 tcgcgaaatg cctcgacctg cggggcgtgg tagcgctccg cgtcatcggc ggtcatgcgc
      481 gcgtcggccc ggtagccgtc gccacgcggc ccgatcacgc cttcgatgac gattggcgcg
      541 ccggtgtctt gctcgtcccg cagctcggtc atcagcgcga ccgagtcggc gttcgcgcgc
      601 cggagttcct cgacggagta gccgagccgc gcgccccagt cgcggttggc gcgccaggtc
      661 ggggtactga ggacgaagcc cgcgcggcgc cgccttgcca cgtcgaggta agcgcggaag
      721 taggctcgaa ggatctcgcg accgccgctc gtctcgagga gcggaaaagc cgcgaagcac
      781 ggcaactcct ggcccgcgag gaagatcagg ctggtctcga gcccgccgtc ggtgatgaac
      841 ggagcgccgg tgagctgcgg cagggcgcgt ctgtacgagg acatcgagaa gctccggagg
      901 ttcgaggtga ccggggcacc ttcgccgacc tcgcggcggc atgcttggag acgagcttga
      961 gatttcgtgg agattgcgcg gaagctgcca ttggggcgct cagcggaaga tcaggaatat
     1021 ctccatgaaa gctccacctc tcctgaaagc ctgcccgaaa tcgcgcgagt agattcgggc
     1081 ctgagctgcc ggccggcagc atgcaacagg agaacgatca tgtccgaact cgccctgtca
     1141 tacgctccgc aaaggaccgg cgtgatcgcc gcccggctcg gcgccgcgtt cacgagcgcc
     1201 gtccggaagc ttcgcgccca taggagcgca cgccaggcgg tgaagcagct gagccagctc
     1261 gacgaccgca tgctgaagga catcggattc taccgaaccg atatcatcgc gctcggttcg
     1321 aagtacggct cggcgcgccg gtggcgctcg tagtccttgc tcaggcgggc aatcccgctc
     1381 gcctgagccc atcaaggtag cggtcgatga aagcctcgtc cgcgcagaag taaaaatcgt
     1441 cgtgcgccgc gccctgactg tagcagggct tgcggctcag gagctccgag atcgccgccg
     1501 ccgcctcctt cagttcgccg aggtggccga gaatcgacgc cagcgtggcg tatccccagg
     1561 atgtcgcgtt cgggtgccgg caggcctggc gcgcgaagaa cacggcgctt tcgagctcgc
     1621 cgagcgaaaa gtgcgcgacc gcacggcagt ggtggaacgt ccataggtgg gggtcccgcg
     1681 ggctcaattc gcaggcctgc tcgagcagcg cgatcgcctc gtcacaccgg ccacaccaca
     1741 ccagcgtgaa cgcgagggcg aaatagccct gcgcgaagct ggggttcatg gcgatggttt
     1801 cctcgagttc cgcgatcgcc tcggcatact gctgatgcat gcagtaggcg cgcccgagga
     1861 cgcagcggca gagggaatca cggccgtcga agctgaccgc ggcccgcgcc gccgccatcc
     1921 cgcgctcgag caacgccgga cggtcgtccc gcgtcgcata gaacgccttc tgcagctgga
     1981 cgtagctcag cccggcatgg gcccgtgcga gaccaggctc gaggtcgatt gcgcggcgga
     2041 acagcacctc cgcctcgtcg aaccccggat tggtgaaccc ccataggtgc cacaggccgc
     2101 gctggtagca gtccaaggcg tcgaggctct cgggaggctt gcgcgaggca atcgcctgct
     2161 cgatggtcgc gagctcgggc tcgacgaccg ccgcgatctg ctttgccatc gagtcctgga
     2221 cgtcgaatat ctcggggagg tcgaactcgt aggcttcgga ccagagctgg cgcgcgttcc
     2281 cggcactcac cagctcggcc gcgatgcgga cgtggtcgcc gagcttgcgc acgctgccct
     2341 gcaccaggta gcgcacgccg agcgcggccc cgacctctcg cgcgtccaca tccttgcccc
     2401 gataggcgac ggtcgcgtga cgcgtgagca cgcgcagcca ccggttcctg ccgaggagcc
     2461 ggatgatgtc ctccgtgagt ccgtaggcga aatactcgtg gtcgggggcg ccggtcacgt
     2521 tcgcaaacgg cagcaccgcg accgacggca tccccgtcga cgaggcatcg ggaagttcgg
     2581 caggctccag cccagccgcc ccggtcaggg ccggggcaag ctcgggcagc tcggcggcct
     2641 gcgaatgctc tgcggcttca gcgacgaatc ggaagccgcg cttgtggaag gtgcggatca
     2701 gcccttgatc gtggccgttg tcgccgacgg ccttgcgggc agcgttgata cggctcgaca
     2761 gcgccgcttc cgacacgatg cggccatgcc agaccgcctc aaggatctcg tccttgctga
     2821 cgatgcggtc cttgttctgg atcaggaaga caaggaggtc gaagacctgc ggctcgacgt
     2881 gcacgacctc gccggcccgg cgcagctcct gccggggcag atcgagctcg cagtcggcga
     2941 acgcaaaccg caccatctcc tccgctccgg cgcaccagcc tataccggat cgaaggtcgc
     3001 atacagggcg tcgcgtccgc caccgatcct cgggaccgtg gctgggcccc tggacgggaa
     3061 cgaggtgggg ctggcggggt cggcgccggg cagactaacc tgcgcgggtc ctcgcctccg
     3121 ggatcgagcc atggtcgctg cctgggccgt gcttctgtcg gccctcgtct atctctgcct
     3181 tctgttcgcg gtcgcccact ggggcgatct gtcgggccgg cgcctcatgg aggggcgggc
     3241 gcgggggacg atctatgcgc tcgcgcttgc ggtctattgc acgtcgtgga cgttcttcgg
     3301 ctcggtgggg ctcgcgaccc gcagcggcct cgacttcctg accatctaca tcggcccgat
     3361 cctggtgatc ggcttcggcc accgcctcgt cgcgcgggtg gtgcgcatcg ccaaggcgca
     3421 gaacatcacc tcggtggccg acttcgtcgc ggcgtgcctc gatccgatcc gcgtggtcct
     3481 gatagaagtt gctcatcgct cggagttgcc aaatgatggt cccgaggatg atgatcaccg
     3541 cgagcgcgat ggcgaacaag gcggcgagcg gatccatctt catgcccgga ctatgccacg
     3601 gctggcctag ccttttcatt ggcggtcact acccagaatt gactatcttg cgccagtagg
     3661 aggggcgtcc cgagaggtag ggcgcagtct gccaagcgag ggcctttgag gagcgggtcg
     3721 ccgcccggga ttg
//
LOCUS       DASQWN010000567         2379 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_252977, whole genome shotgun sequence.
ACCESSION   DASQWN010000567 DASQWN010000000
VERSION     DASQWN010000567.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2379)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2379)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2379
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_252977"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..226)
                     /locus_tag="VE686_10655"
     CDS             complement(<1..226)
                     /locus_tag="VE686_10655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018689559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent epimerase/dehydratase family
                     protein"
                     /protein_id="HYY84943.1"
                     /translation="MGAVLTRTQQLVTVFGGSGFLGRYVVRSLAQRGYRIRIAVRRPD
                     LAGHLQPLGKVGQIHAVQANLRHRGSVEHAV"
     gene            361..445
                     /locus_tag="VE686_10660"
     tRNA            361..445
                     /locus_tag="VE686_10660"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:395..397,aa:Leu,seq:cag)
     gene            complement(474..1100)
                     /locus_tag="VE686_10665"
     CDS             complement(474..1100)
                     /locus_tag="VE686_10665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008974206.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="trimeric intracellular cation channel family
                     protein"
                     /protein_id="HYY84944.1"
                     /translation="MEAASLLVRALDLVGTFVFALSGAMQGVRRGMDLFGVLVLGCVT
                     AVLGGIVRDLLIGAVPPAAIASWHYLALAIAAGLLAFFFYGQFDRMQQPVLFFDAAGL
                     GVFAAAGAQKALDYGLDWPMAAVLGMLSGIGGGMARDVLTAEVPIVLRSDIYAVAGLA
                     GALVVTAGSAAGLPSAPVALAGAAACVFLRMMALYRGWKLPSAPPREP"
     gene            1374..2048
                     /locus_tag="VE686_10670"
     CDS             1374..2048
                     /locus_tag="VE686_10670"
                     /EC_number="2.1.1.77"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010967809.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004719 - protein-L-isoaspartate
                     (D-aspartate) O-methyltransferase activity [Evidence IEA];
                     GO_process: GO:0036211 - protein modification process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protein-L-isoaspartate(D-aspartate)
                     O-methyltransferase"
                     /protein_id="HYY84945.1"
                     /translation="MKGLTEEHLAVLRRHMVDVIAIHAELTSDEIGKAALDPRVIEAM
                     REVPRHKFVLAPLAQLAYEDSPLPIGFDKTVSQPFIVALMTDLLEVGPEDGVLDVGTG
                     LGYQAAILSRLARQVWTVEIVEEFAAEAEVRLRRLGYANVALRTGDGSRGWAEHAPFD
                     RILVAAAAEEPPRALLDQLEPGGRLVMPVGSTESQTLAVFDKSPAGQVARRDVLPVRF
                     GQLETI"
     gene            2141..>2379
                     /locus_tag="VE686_10675"
     CDS             2141..>2379
                     /locus_tag="VE686_10675"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY84946.1"
                     /translation="MLCDGCEEVSLGEGLTYGDCVFCSEPCFEEWFAGPRAARKMEPA
                     VALDRRPCARATLRLVAATAVVAGAVLLAGHGPAQA"
BASE COUNT          378 a          861 c          820 g          320 t
ORIGIN      
        1 cgacggcgtg ctcgaccgag ccgcggtggc gcaggttcgc ctgcacggcg tggatctggc
       61 cgaccttgcc gaggggctgg agatggccgg cgaggtccgg ccggcgcacg gcgatccgga
      121 tccgataccc gcgctgggcc agcgaccgca cgacgtagcg gccgaggaag cccgagccgc
      181 cgaacaccgt cacgagctgc tgcgtgcgcg tcagcaccgc gcccatcatg gcaagaccct
      241 ccgtcgcctg aagcgattgg cgttccttag tcgccgccgc gggcggtgtg aaggggcgcc
      301 ggcggcggca ttgacgcctg ccgacccgca ccgtaaacga tccccgccga caccctcggc
      361 gcccaggtgg cggaattggt agacgcgctg gtttcaggta ccagtggtga aagccgtgga
      421 ggttcgagtc ctctcctggg caccaacgct tctctagcga ccagtgggag gacctagggc
      481 tccctcggtg gagctgaggg cagcttccag ccgcggtaga gcgccatcat gcgcaggaac
      541 acgcatgccg ccgcaccggc gagcgcgacg ggtgcggacg gcagcccggc ggcggagccg
      601 gcggtcacga ccagcgcgcc cgcgaggccg gcaaccgcat agatgtcgga gcgcagcacg
      661 atcggcacct ccgccgtcag gacatcgcgg gccatgcctc cgccgatgcc gctcagcatt
      721 ccgaggacgg cagccatggg ccaatcgagc ccgtagtcca gcgccttctg ggcccccgcc
      781 gcggcgaaga cgccgagccc ggccgcgtcg aagaagagca ccggctgctg catccggtcg
      841 aactgcccgt agaagaagaa cgcaagcagc ccggccgcta tggcgagagc gagataatgc
      901 cagctagcga tggccgcggg cgggaccgct ccgatgagga gatcgcgcac gatgccgccc
      961 aggaccgccg tgacgcagcc cagcaccagg actccgaaca ggtccatgcc gcgccgcacc
     1021 ccctgcatcg ccccgctgag ggcgaagacg aaggttccga cgaggtcgag ggcccggacc
     1081 agcaggcttg cagcttccat gccggtcagg aatctccatc gccggcagcg cgccgcacgg
     1141 acaggggacc catcagcacg acgtgaccgc gagggccctt catgcgccgt ctccctgatc
     1201 aatgcgggtt gtgaactcgc gtgatgacga gcgtaacagg tcgcgaaccc tgacgacaat
     1261 cgacggccgc tctcggtgcc ttccgggcct tcgccgccgc gctcggcaac agcgccaggt
     1321 cgaactcctg cctcaatggt gattgcacct ggggcttgga ggagccggag ctcatgaagg
     1381 gtctgacgga ggagcacctc gccgtcctgc gccgccacat ggtcgacgtg atcgcgatcc
     1441 acgcggagct cacgagcgac gagatcggca aggcggcgct cgacccccgc gtcatcgaag
     1501 cgatgcgcga ggtgccgcgg cacaagttcg tcctcgcccc cctggcgcag ctcgcctacg
     1561 aggacagccc gctgcccatc ggcttcgaca agacggtgtc gcagcccttc atcgtcgccc
     1621 tgatgacgga cctcctggag gtcggcccgg aggatggcgt gctcgacgtc ggaaccgggc
     1681 tcggctacca ggccgccatc ctgtcgaggc tcgcgcgcca ggtctggacc gtggagatcg
     1741 tcgaggagtt cgcggccgaa gccgaagtgc gcctgcgccg cctcggctac gccaacgtcg
     1801 ccctccgcac cggcgacgga tcgcgcggct gggccgagca cgcccccttc gaccgcatcc
     1861 tcgtcgccgc cgccgccgag gagccgcccc gcgccctcct cgaccagctc gagcccggag
     1921 gacggctcgt catgcctgtc ggatccacgg agagccagac gctggccgtc ttcgacaaga
     1981 gccccgcggg ccaagttgcc cgccgcgacg tccttccggt caggttcggc cagctcgaga
     2041 cgatctgagg gaccgtcagc gggttgtccc cagcgatccg accgacccgc gccgcccccg
     2101 cgcacgcccc acgctaatct cctcccgcgg aggtgattcg atgctgtgcg acggctgcga
     2161 ggaggtctct ctcggggagg ggctcacgta tggagactgc gtgttctgct ccgagccgtg
     2221 cttcgaggaa tggttcgccg gtccgcgcgc ggcgcggaag atggagccgg ccgtggctct
     2281 cgaccggcgc ccctgcgcgc gggcgacgct caggctcgtc gccgcgaccg ccgtcgtggc
     2341 cggggcagtc ctgctcgccg gtcacggacc cgcgcaggc
//
LOCUS       DASQWN010000568         3098 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_254098, whole genome shotgun sequence.
ACCESSION   DASQWN010000568 DASQWN010000000
VERSION     DASQWN010000568.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 3098)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3098)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3098
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_254098"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1462
                     /locus_tag="VE686_10680"
     CDS             <1..1462
                     /locus_tag="VE686_10680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017487327.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="toprim domain-containing protein"
                     /protein_id="HYY84947.1"
                     /translation="DSQARFRIGYAPADRYALRDHLAAKSVSVEAMVEAGLLVTGDEI
                     QVPYDRFRDRVMFPIADPRGRIVAFGGRALAADVPAKYLNSPDTPLFSKGRLLYNFHH
                     ARKAAHEHGTVIAVEGYVDVIAMTAIGYGNAVAPLGTALTEEQLALLWRLADEPILCF
                     DGDKAGRRAAYRALDVALPSLVPGKSLRFALLPEGQDPDDLARAGGQAALARVLDAAR
                     PLADMLWSRELEAGPLDTPERRAALERRLKEALQVIRDETLKRYYRQDIEARLAALSS
                     GSRAGRFLRQNGSGGRFRPQQDPRRGYLGRPLPMASRIMASSVVVASDQVSPREAMML
                     AVLAAHPELLQAHAETLSDLDFGGRPAERLRSALLDCAASGGRLDSAVIEARLSRAGL
                     DEAVERLTALVRPGDRWALDPHADPLRLEDALRQAFILQRRARTLHSELRAAERALAE
                     GESEANLAWMRQVQNELFSIEGAEAETDGISGRMAG"
     gene            1637..>3098
                     /locus_tag="VE686_10685"
     CDS             1637..>3098
                     /locus_tag="VE686_10685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020184365.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor region1.1
                     domain-containing protein"
                     /protein_id="HYY84948.1"
                     /translation="MATKTKTKTAERDDAEAAPEQQADGPLLDLTDQSVRKMIKAAKK
                     RGYVTYDQLNEVLPSEEFSSEQIEDVLGQLSEMGINVVESEEAEEGQPAEAPAADADD
                     DEEDGEAPQTAPARAVAVRPETTKEPTDRTDDPVRMYLREMGSVELLSREGEIAIAKR
                     IEAGREAMIAGLCESPLTFQAIIIWRDELNEGRVLLRDIIDLEATYAGPDGKNAPKGD
                     GEGAGEPGASGAAAVAPDGEAEEPEIPPPEADLDDDDLESNVSLSAMEAELKPRVVET
                     FDSIADNYKKLRRLQVENVDLRLQNKQLTPAQERKYKKLKDDIVKDVKSLSLNGNRIE
                     ALVEQLYDINKRLISHEGRLMRLAESYGVSRDEFLKHYQGQELDPKWVLRVSKLGGRG
                     WKEFVAKGKTSIHDLRENIHNLASETGLEIQEFRKIVSMVQKGEREARQAKKEMIEAN
                     LRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFE"
BASE COUNT          548 a         1066 c         1037 g          447 t
ORIGIN      
        1 cgacagccag gcgcgcttcc gcattggcta cgctccggca gaccgctacg cacttcgcga
       61 ccacctcgcg gccaagagcg tttccgtcga ggcgatggtg gaggcggggc tcctcgtcac
      121 gggcgacgaa atccaggtcc cgtatgaccg gttccgtgat cgggtcatgt tcccgatcgc
      181 cgaccctcga gggcgcatcg tcgccttcgg cggccgggcg ctcgccgccg acgtgccggc
      241 aaagtacctg aactcgcccg acaccccgct cttcagtaag ggccggcttc tctacaactt
      301 ccaccatgcg cgcaaggccg cgcatgagca tggcaccgtc atcgccgtcg agggctacgt
      361 cgacgtgata gcgatgacgg ccatcggtta cgggaacgcg gtcgcccccc tcgggaccgc
      421 tctcactgag gaacagcttg cgctattgtg gcgcctcgcg gatgagccaa tcctctgctt
      481 cgacggcgac aaggcgggcc gccgcgccgc ctatcgcgcc ctggacgttg cgcttccgtc
      541 cctagtgccc ggaaagtccc ttcgcttcgc tttgctgccg gaagggcagg atcccgacga
      601 tctcgctcgc gccggcggtc aggcggcgct cgcgcgggtg ctcgacgcag cccgccctct
      661 cgcagacatg ctttggagcc gggaactcga ggcggggccc ctcgacaccc cggagcgccg
      721 cgccgccctc gagcgccgcc tcaaggaggc gctgcaggtg atccgggacg agaccctgaa
      781 acgctactat cgccaggata tcgaggcgcg gctcgccgcg ctgagctcgg gaagccgcgc
      841 cgggcggttc ctccgacaaa acggaagcgg agggcgcttc cgcccgcagc aggatccccg
      901 ccgggggtat ctcggacgcc cgctgccgat ggcgagccgg atcatggcga gttcggtcgt
      961 agtcgcgtcg gatcaggttt cgccgcgcga ggccatgatg ctggctgttt tggcggcgca
     1021 ccccgagctg ctgcaggccc acgcggaaac cttgtcggac ctcgacttcg gtgggcggcc
     1081 agccgagcgc ctgcggagcg cccttcttga ctgtgccgcc tcgggcgggc gcctcgattc
     1141 ggccgtgatc gaggcgcgct tgtcccgggc tggcctcgac gaggccgtcg agcggctcac
     1201 cgccctggtg cggcctggcg accgctgggc cctcgacccg cacgctgacc cgctgcggct
     1261 tgaggacgca ttgcgtcaag ccttcatctt gcaacgtcgc gcccgaacgc tacatagcga
     1321 actccgcgca gccgaacggg cgcttgccga aggtgagagc gaggcgaacc tcgcctggat
     1381 gcggcaggtt cagaacgagc tcttctcaat cgaaggagcc gaggccgaaa cggatgggat
     1441 ttccgggcgg atggcgggct agacgcggac gccgggcggc cttcgggccg gacgggagat
     1501 ggttacggtt ggtcaagcga ctcactgttt cctgctatgg aacgacggcg ctgccgggcc
     1561 gtaagctcgg gggcgccctt tgccgttgcg ccggcgtcgg gaccgaccga tgcgcgtggg
     1621 ctgatatggg ttgatgatgg cgacgaagac aaaaaccaag acggccgagc gcgacgacgc
     1681 cgaggcggct cccgagcagc aggccgacgg gccgctcctc gacctcacgg atcagtccgt
     1741 ccgcaagatg atcaaggccg ccaagaagcg cggctacgtc acctacgacc agctcaacga
     1801 ggtcctgccc tcggaggagt tctcctccga gcagatcgag gacgtgctcg gccagctctc
     1861 cgagatgggc atcaacgtcg tcgaatcgga ggaggccgag gagggccagc cggcggaagc
     1921 tcccgccgcc gacgcggacg acgacgagga ggacggcgag gcgccccaga cggcgccggc
     1981 ccgcgccgtg gcggtgcgtc ccgagaccac caaggagccg accgaccgca ccgacgaccc
     2041 ggtgcgcatg tacctgcgcg agatgggctc ggtcgagctc ctctcccgcg agggcgagat
     2101 cgccatcgcc aagcgcatcg aggccggccg cgaggcgatg atcgccgggc tctgcgagag
     2161 cccgctcacc ttccaggcca tcatcatctg gcgcgacgag ctgaacgagg gccgcgtcct
     2221 cttgcgcgac atcatcgacc tcgaggcgac ctacgccggc cccgacggca agaacgcgcc
     2281 gaaaggcgac ggcgaaggcg ccggggagcc cggcgccagt ggtgccgcgg ccgtggcccc
     2341 cgacggcgag gccgaggagc ccgagatccc gccccccgag gccgacctcg acgacgacga
     2401 cctcgagtcc aacgtctccc tctcggccat ggaagccgag ctgaagccgc gcgtcgtcga
     2461 gacgttcgat tccatcgccg acaactacaa gaagttgcgc cgcctccagg tcgagaacgt
     2521 cgatttacgc ctgcagaaca agcagctcac ccccgcccag gagcgcaagt acaagaagct
     2581 caaggacgac atcgtcaagg acgtgaagtc cctctcgctc aacggcaacc gcatcgaggc
     2641 gctggtcgag cagctctacg acatcaacaa gcgcctgatc tcgcacgagg gccgcctcat
     2701 gcggctggcc gagagctacg gcgtctcgcg cgacgagttc ctcaagcact accagggcca
     2761 ggagctcgac ccgaagtggg tcttgcgcgt gtcgaagctc ggcggccgcg gctggaagga
     2821 gttcgtggcc aagggcaaga cctcgatcca cgacctgcgc gagaacatcc acaatctcgc
     2881 gtcggagacc ggcctggaga tccaggagtt ccgcaagatc gtgtccatgg tccagaaagg
     2941 cgagcgcgag gcccgccagg ccaagaagga gatgatcgag gccaacctgc gcctcgtgat
     3001 ctccatcgcc aagaagtaca cgaaccgcgg cctgcaattc cttgatctta ttcaggaagg
     3061 caacatcggc ctgatgaagg ccgtcgacaa gttcgagt
//
LOCUS       DASQWN010000569         2497 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_254290, whole genome shotgun sequence.
ACCESSION   DASQWN010000569 DASQWN010000000
VERSION     DASQWN010000569.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2497)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2497)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2497
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_254290"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            435..614
                     /locus_tag="VE686_10690"
     CDS             435..614
                     /locus_tag="VE686_10690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017266853.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY84949.1"
                     /translation="MQDPRTRPSPPRQLLIALDATRLRGMSPHDRRQAVTRLATLLTE
                     AAGAAADAERGDDGR"
     gene            601..>2497
                     /locus_tag="VE686_10695"
     CDS             601..>2497
                     /locus_tag="VE686_10695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006199992.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000150 - DNA strand exchange activity
                     [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase family protein"
                     /protein_id="HYY84950.1"
                     /translation="MTDGEILPPAILQRKAVVYVRQSTQTQVEANTEGRRRQYELVDV
                     ARRRGFQTVEVIDDDLGRSASGMVARPGFEKLVAALCAGEIGAVLCFDASRLARNGRD
                     WHHLLELCGLVEARVIDLDGIYDPCRPNDRLLLGMKGSISEFELGVIRARMLDAARAK
                     ARRGELRISVPIGYVWHREIGLGFDPDVRLQQAIRRVFERFRQLGSARQTHLSLAAED
                     LFFPRPSDGKRLTSFDWTPIRYRNVIGLLKNPFYAGAYVYGKSEKRIAVVDGRARKSY
                     GHGKPAEDWDVLIRDHHEGYIDWSEYQRNQALLAANAYGRVGGQKSGRGGRALLSGML
                     TCGRCGRGLAVAYTGAPPGRPTYRCDRPNLMLGLPRCLGFGGSRVDAAIAAEILSVAE
                     PMTIEAALEAERMHREGEAERRCVAELDLRQADYDASLAERRYAACDPENRLIAAQLE
                     KHWEAALRRVEACRARLAALDAPKPATPMPDFGGLAADLATAWSAPGVTTRARQQLIR
                     ALVADIIADVDEATREVVLTIHWRGGQHSQLRVRKPKTGEHGCRTPDTALAVMARMVT
                     RFSDVDIAATLNRMGVRTGQGKTWTAHRVGSIRKVHGMHAFRSAEKDGEWLTMREAAA
                     KLGVTSHA"
BASE COUNT          377 a          873 c          892 g          355 t
ORIGIN      
        1 agccacgcct ggggctcgac cccgttcagc ttggcggtcg gcaccaagct cgccacgatc
       61 gcccagtgcc gcgccccgcc atccgagccg gcgaacaagg cgttcttgcg gcccaaggcc
      121 atcatccgtc cattctgccc atatcgggca acacgctgtc gtccattatc gctggcatgc
      181 gctgttcggc cgtcgcgtcc ggatcgagcg ggccgacaac cgtaaggcgg gccggttcgt
      241 ccacgtcgag gtgctgcccg gcgtcgtgac ggtggtggcc gcatggatgc tcgacgcgtc
      301 ggcctgcgtc ggcatggaga tcggcgcgcc gcgcgcgtcc ctggcggcgc tgcaggatct
      361 cgacgacctt ctgaagcgac gcggacttcg ccgaagctgc tcgggcgaca tcgccgccag
      421 agaggagcag cccgatgcaa gacccgcgga cgaggccttc gccaccccga caactgctga
      481 tcgcgctgga cgcgacgcgg ttgcgcggaa tgagcccgca cgatcggcgt caggccgtga
      541 cgcgcctcgc gaccctgctg acggaagcgg ccggggccgc ggcggacgcg gagcggggcg
      601 atgacggacg gtgagatcct cccgccggcg atcctgcaac gcaaggcggt ggtctatgtg
      661 cggcagtcga cgcagaccca ggtcgaggcg aacaccgagg gtcgacggcg ccagtacgag
      721 ctggtcgacg tcgcccgacg ccgcggcttc cagaccgtcg aggtgatcga cgacgatctc
      781 ggccgctcgg cgagcggcat ggtcgcccgg cccggcttcg agaagctcgt cgccgcgctc
      841 tgcgcgggcg agatcggcgc cgtgctgtgc ttcgacgcat cgcgactggc ccgcaacggc
      901 cgggactggc atcacctgct cgagctgtgc gggctggtcg aggcgagggt catcgacctc
      961 gacggcatct atgatccctg ccgaccgaac gatcgcttgc tgctcggcat gaagggcagc
     1021 atcagcgagt tcgagctcgg cgtgatccgc gcgcgcatgc tcgacgccgc ccgggcgaag
     1081 gcccgccggg gcgagctgcg gatcagcgtg ccgatcggct atgtctggca tcgcgagatc
     1141 gggctcggct tcgatccgga cgtccgcctg cagcaggcga tccgacgggt gttcgagcgg
     1201 ttccgccagc tcggcagcgc gcgccagacg cacctgtcgc tggcggcaga ggatctgttc
     1261 ttcccgcggc cctccgacgg caagcggctg acatccttcg actggacgcc gatccgctac
     1321 cgcaacgtga tcgggctcct gaagaacccc ttctacgcag gcgcttacgt ctacggcaaa
     1381 agcgagaagc ggatcgcggt ggtcgacgga cgggcgcgca agtcctacgg tcacggcaag
     1441 cctgccgagg actgggacgt gctgatccgc gatcatcacg aaggctacat cgactggtcg
     1501 gagtaccagc ggaaccaggc gctgctcgcc gccaacgcct acgggcgggt cggcggacag
     1561 aagtccggcc ggggtggccg ggcgctgctg tcggggatgc tcacctgcgg ccgctgcggc
     1621 cgcgggctgg cggtggccta cacgggcgcg ccgcccggtc gcccgaccta tcgctgcgac
     1681 cggcccaatc tcatgctcgg cttgccgcgc tgcctcggtt tcggcggctc ccgcgtggac
     1741 gccgcgatcg cggcggagat cttgagcgtg gccgagccga tgaccatcga ggcggcactg
     1801 gaggccgagc ggatgcaccg ggaaggggag gccgagcgcc ggtgcgtcgc cgaactcgac
     1861 ctgcggcagg ccgactacga cgcctcgctt gccgagcggc gctacgccgc ctgcgatccg
     1921 gagaaccggc tcatcgccgc gcagctcgag aagcactggg aggccgcgct gcgacgcgtc
     1981 gaggcctgtc gagcgcgtct cgcggcgctg gacgcgccta agcccgcaac gccgatgcct
     2041 gatttcggcg gtctggcggc ggacctcgcc acggcatggt ccgcgcccgg cgtcaccacc
     2101 cgcgcgcggc agcagctgat ccgggcgctg gtcgccgaca tcatcgccga cgtcgacgag
     2161 gcgacccggg aggtggtgct gacgatccac tggcggggcg gccagcattc gcagctgcgc
     2221 gtccgcaagc cgaagacggg cgagcacggc tgccggacgc ctgacaccgc cctcgccgtg
     2281 atggcgcgca tggtgacgcg attttctgac gtcgacatcg cggccacctt gaaccgcatg
     2341 ggcgtgcgca ccggccaggg caagacctgg acggcgcacc gcgtcggctc catccgcaag
     2401 gttcacggca tgcacgcctt ccgctcggcg gagaaggatg gcgaatggct caccatgcgt
     2461 gaggctgctg ccaagctcgg cgtcaccagc cacgcca
//
LOCUS       DASQWN010000570         2187 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_254919, whole genome shotgun sequence.
ACCESSION   DASQWN010000570 DASQWN010000000
VERSION     DASQWN010000570.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2187)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2187)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2187
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_254919"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(1..667)
                     /locus_tag="VE686_10700"
                     /pseudo
     CDS             complement(1..667)
                     /locus_tag="VE686_10700"
                     /inference="COORDINATES: protein motif:HMM:NF015423.4"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="trimeric intracellular cation channel family
                     protein"
     gene            complement(1262..1474)
                     /locus_tag="VE686_10705"
     CDS             complement(1262..1474)
                     /locus_tag="VE686_10705"
                     /inference="COORDINATES: protein motif:HMM:NF012790.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhodanese-like domain-containing protein"
                     /protein_id="HYY84951.1"
                     /translation="MVERIDRDELRTKIDRGDPFVLLEVLAPRYYRHSHLPGALNLPP
                     GKATEMAPDLLPDKEAEIVLYCWDAA"
     gene            complement(1476..>2187)
                     /locus_tag="VE686_10710"
     CDS             complement(1476..>2187)
                     /locus_tag="VE686_10710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007759094.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="NAD(P)-binding domain-containing protein"
                     /protein_id="HYY84952.1"
                     /translation="RGSFSARGVINATGTWEAAYIPEYPGAERFKGRQLHTKDYRTAE
                     EFAGKHVIVVGGGISAIQLLDEVSRVTTTTWVTRRPPDFREGPFTEERGRAAVALVEE
                     RVRRGLPPRSVVSVTGLPVTPAIEAMRARGVLHRLPMFSEILEDGVRWSDGAYLRADV
                     ILWCTGFRSSLDHLAPLMLREPGGGITMSGKLATQVAKDPRLHLVGYGPSASTIGANR
                     AGRAAARELMAFLGEEKG"
BASE COUNT          393 a          742 c          693 g          359 t
ORIGIN      
        1 agatcgaacc acacggcaga caggcggagg agcagcgtga ccgctatgga agccgtgagg
       61 gttatggcgc cctgccccac ccacgcactc aacacgacgt aggtggacgc cccggcgatc
      121 gcggcggtcg cgtagatatc ctgccgcagt atcatcggag tctcgccgca gagcacgtcc
      181 cgcacggcgc cgcccacgac gcccgtgatc gcgcccatga tgacggcgat gagcggcgag
      241 acccccgcct ccagccccgc gcgcacgccc agcacggcga agaccgccaa accgaaggcg
      301 tcggcgacga gcaacgcgcc gtggggcggc ctgcgaaaac gagcatagac gagcgtgcag
      361 accgccgccg cagcgatgac gtagaggtag gcggcgtcgg tgagccaaaa gacgggccgg
      421 tcgaggagca cgtcgcggac cgtgccgccg ccgatggcgt caccgccgcg actaccggca
      481 cgccgaagag gtccatccct cggcgggagg ccgtcaaggc gccgctgacc gcgaaagcga
      541 acacgccgac gagatccata aggtggaggt acatgtgccg agaggttagc agacgatgac
      601 cggctggaac ttcgtccggg tcacgccgcg gcggtctcgg cacgcggcag acgcgacctc
      661 cgctcattgt gcccagtggc gtcaaaatgc gcgcggtaag tatccgggcg cttctcagct
      721 ctccggcatt ccctactaat gttcagccga attgattaag ccgacgagcg gactcgaacc
      781 gctttgctgc tcattacgag tgagaaaagt gtatggctag ggattgcatg ggcctgcaaa
      841 acccgcttag agaagccgtt attgttctgc ggactgccct ccgttgcagg acgtagcgcg
      901 ctgggtgcta tcagaatgat atacgcgaag accttaccag atgcgagtac attggccgct
      961 gcggctgctg cctgtcggga ggcgccttca gaaccaccct ggtacgggcg ccaggtcccg
     1021 ggcctagatg taggctcgcc tccagcacct ctgccctccc ccatcgtgcc acgcggaccg
     1081 atccgagtga actagtaggc atcgatcccc cgtatcctca tcgaccgcgt tgtcggtgtc
     1141 gtcggcttct gccctccact ggcagcccgg acgcgatcca ggctttcttg ccctcgccgt
     1201 actcccgcac gttggtgtag cccatggccg ccagctcacg ggcggcccgc agggacgtgc
     1261 gtcacgccgc gtcccagcaa tagagcacta tctcggcctc cttatcgggt agcaagtccg
     1321 gcgccatctc ggtagccttg ccgggcggaa ggttcaacgc tccgggcaaa tgagagtgcc
     1381 ggtagtacct aggagccagc acttccagca agacgaaagg gtctcccctg tcgatcttcg
     1441 tccgcagttc gtcgcgatct atgcgctcga ccacgctacc ccttctcctc tcccagaaac
     1501 gccatcagct cgcgggcggc ggccctgccg gcacgattcg cgccgatggt cgacgcggag
     1561 ggtccgtagc cgacgagatg gagcctcggg tccttcgcaa cctgcgtggc cagcttgccg
     1621 ctcatggtta tgccgccgcc gggttcgcgc agcatcagcg gcgccaggtg atcgagggag
     1681 ctacgaaaac ccgtgcacca gaggatcacg tcggcacgca gataagcccc gtccgaccag
     1741 cggacgccgt cttcgaggat ttcgctgaac atcggcagac ggtgcagcac ccctcgggct
     1801 cgcatggcct cgatcgctgg ggtgaccggc agccccgtca ccgaaaccac ggatcggggc
     1861 ggcaagccgc ggcgcacccg ttcttcgacc agcgccacgg cggcgcggcc cctttcttcg
     1921 gtaaagggtc cctctcggaa gtcgggcggt ctgcgggtga cccaggtcgt ggtggtcacg
     1981 cgcgagacct cgtcgagcag ctgtattgcc gagataccgc caccgacgac gatcacgtgc
     2041 ttaccggcga actcctcggc cgttcggtaa tctttggtgt gaagttgcct gcccttgaac
     2101 cgttccgcgc ctgggtactc cgggatgtac gcagcctccc atgtgcccgt ggcgttgatc
     2161 accccgcggg ccgagaagct gcccctg
//
LOCUS       DASQWN010000571         2159 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_952600, whole genome shotgun sequence.
ACCESSION   DASQWN010000571 DASQWN010000000
VERSION     DASQWN010000571.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2159)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2159)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2159
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_952600"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..592)
                     /locus_tag="VE686_10715"
     CDS             complement(<1..592)
                     /locus_tag="VE686_10715"
                     /inference="COORDINATES: protein motif:HMM:NF016908.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FkbM family methyltransferase"
                     /protein_id="HYY84953.1"
                     /translation="MDLFYAQNLEDYHLAQAFADRADGFYVDIGAGHPVADNVSFSFY
                     LRGWRGLVVEPQRRLAELYGHVRPRDGVFAGLAADRIGEAEFHEVESMHGFSTMLPDA
                     AQAARDLGASVATVTVPVTTLAALLAEHGVEKVDFLKIDVEGAEAQVLAGADWSRWRP
                     RIIVLEAVAPGSMAPAWEAWEPMLTSNGYRFGLFDGL"
     gene            702..1340
                     /locus_tag="VE686_10720"
     CDS             702..1340
                     /locus_tag="VE686_10720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009763011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HYY84954.1"
                     /translation="MQDLRALIVPVTPFEQNCGILWSEATKRGAVIDPGGDLDRVEEG
                     IAQAGVTIEKILLTHGHIDHAGGAAALKEKLGVPIEGPHRADAFLLDRLAETGRSYGI
                     VGARNVTPDRWLEEGDEVTVGGVAFQVLHCPGHSPGSVVFVNAAERFAVVGDVLFQGS
                     VGRTDLPGGSHAALIESITTKLLPLGDDMAFICGHGPPSTIGDERATNPFLR"
     gene            1353..1967
                     /locus_tag="VE686_10725"
     CDS             1353..1967
                     /locus_tag="VE686_10725"
                     /EC_number="3.2.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012330759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003905 - alkylbase DNA N-glycosylase
                     activity [Evidence IEA];
                     GO_process: GO:0006284 - base-excision repair [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-3-methyladenine glycosylase"
                     /protein_id="HYY84955.1"
                     /translation="MASLPPEFFGDPAAVVARNLIGATLLVDGVGGMIVETEAYARDD
                     PAAHSFGGETARNASMFGPPGRAYVYRSYGIHWCLNVVCGEQAGSAVLIRALAPEVGI
                     DVMRERRRLTDVRLLCAGPGRLCEALAITRAHDGLRLDRAPFTLAAPTAEPDVVVGPR
                     IGIARGVETPWRFGAAGSPFLSRPFRSSPPAPRVPRGTDHASRR"
BASE COUNT          316 a          774 c          741 g          328 t
ORIGIN      
        1 tgagcccgtc gaagagcccg aagcgatagc cgttgctcgt gagcatcggc tcccaggcct
       61 cccacgccgg cgccatgctg cccggcgcga ccgcttcgag gacgatgatc cgcgggcgcc
      121 agcggctcca gtccgcgccg gcaagcacct gcgcctcggc gccctcgacg tcgatcttga
      181 ggaagtcgac cttctcgacc ccgtgctcgg ccaacagcgc ggcgagcgtg gtcaccggca
      241 ccgtcacggt tgcgacgctc gcaccgaggt ctcgcgctgc ctgcgccgca tcggggagca
      301 tggtcgagaa gccatgcatg ctctcgacct cgtggaactc ggcctcgccg atccggtcgg
      361 cagcgaggcc cgcgaagacc ccgtcgcggg gccgtacatg cccatagagt tcggctagcc
      421 ggcgctgcgg ctcgaccacg agcccgcgcc agccgcgcag gtagaacgag aacgacacgt
      481 tgtcggcgac cgggtgcccg gccccgatgt cgacgtagaa cccgtccgcc cgatccgcga
      541 aggcctgggc gagatggtag tcctcgaggt tctgggcata gaacaggtcc aacggcggct
      601 cctccggtcg ctcccaccat acattgcgcc gccgcgcgcc gcttgcacgg gcggccccgg
      661 tccgccacat ggcgcaggtc cgtctcatcc tggcaggccc catgcaagac ctacgcgccc
      721 tgatcgtccc ggtgacgccg ttcgagcaga actgcggcat cctgtggagc gaggcgacca
      781 agcggggtgc tgtcatcgat cccggcggcg acctcgaccg cgtcgaggag gggatcgcgc
      841 aggcgggcgt cacgatcgag aagatcctgc tgacgcacgg ccacatcgat cacgccggcg
      901 gggccgccgc gctcaaggag aagctcggcg tgccgatcga ggggccgcat cgggctgacg
      961 ccttcctgct cgatcgcctt gccgagacgg ggcgatcgta cggcatcgtg ggcgcccgca
     1021 atgtcacgcc cgaccggtgg ctcgaggaag gcgacgaggt caccgtcggc ggggtcgcgt
     1081 tccaggtgct gcattgcccg gggcactcgc cggggagcgt cgtgttcgtc aatgcggccg
     1141 agcgctttgc cgttgtcggc gacgtgctgt tccagggctc cgtcggacgc accgacctgc
     1201 cgggcggcag ccatgccgcg ctgatcgagt cgatcaccac gaagcttctg ccactcggcg
     1261 acgatatggc tttcatctgc ggccacggcc cgccgagcac catcggcgac gagagggcca
     1321 cgaacccctt cctgcgctga cgcgcccgcc gcatggcatc tctgcccccc gagttcttcg
     1381 gcgaccccgc cgcggtggtc gcccgcaatc tcatcggagc gacgctcctg gtggacggcg
     1441 tcggcggcat gatcgtggag accgaagcct acgctcgtga cgatcctgcc gcgcatagct
     1501 ttggcggcga gactgcccgc aacgcatcca tgttcggccc acccgggcgt gcctacgtgt
     1561 accgctcgta cggcatccac tggtgcctca acgtcgtctg cggcgagcaa gccggaagcg
     1621 ctgtgctcat ccgtgccctc gcgccggagg tgggcatcga cgtgatgcgc gagcggcggc
     1681 gcctcacgga cgtgcggctc ctgtgcgccg ggccgggacg cctgtgcgag gcactcgcca
     1741 tcacgcgggc gcacgacggg ctgcggctcg atcgcgcgcc gttcactctc gcagcgccaa
     1801 cggctgagcc ggacgtggtc gtcggcccgc gtatcggcat tgcgcgcggg gtcgagacgc
     1861 cgtggcgctt cggggctgcg ggctccccct tcttgagccg ccctttccgt tcctctccgc
     1921 cggccccgcg cgttcctcgc ggaacggacc acgcaagccg gcgttgaagt tcgacctgtc
     1981 agggtgtcat cggaggatgc gatgagccag gcaaccacca ccaccgatca cgacgagatc
     2041 aggcgctggg ccgaggagcg cggcggccgc ccgtccgtcg tgcgcaccgg ccaaggacgc
     2101 ggcggcattc ttcggttcga cttcggcgag aaggaggaga gcctcgagga gatttcctg
//
LOCUS       DASQWN010000572         2263 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_953357, whole genome shotgun sequence.
ACCESSION   DASQWN010000572 DASQWN010000000
VERSION     DASQWN010000572.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2263)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2263)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2263
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_953357"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..311)
                     /locus_tag="VE686_10730"
     CDS             complement(<1..311)
                     /locus_tag="VE686_10730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018095782.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate/tyrosine/aromatic aminotransferase"
                     /protein_id="HYY84956.1"
                     /translation="MILPINPHLRDVGSPPIPEAQAWLKRYDGAHGPLIDLSQAAPGY
                     PPPPELLARLGTAAGSTDATRYGPIAGDADLRAAYAAHFAALYGGDIGAGDVAITAGC
                     N"
     gene            complement(559..1128)
                     /gene="efp"
                     /locus_tag="VE686_10735"
     CDS             complement(559..1128)
                     /gene="efp"
                     /locus_tag="VE686_10735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019904601.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003746 - translation elongation factor
                     activity [Evidence IEA];
                     GO_process: GO:0006414 - translational elongation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor P"
                     /protein_id="HYY84957.1"
                     /translation="MKVIASSLRKGNVVEMTDGRLYVVLSAENIHPGKGTPVTQLDMR
                     RISDGVKVSERYRTTEQVERAFVEDRDHTFLYKDGEGSHFMNPETYEQLAVPDDVIGE
                     QAAYLQEGMVVKLSVYNGIPIAIELPQRATFEVVDTEPAMKGQTASSSYKPATLSNGA
                     RAMVPPHISPGTRIVILTADGSYVERAKD"
     gene            1274..>2263
                     /gene="epmA"
                     /locus_tag="VE686_10740"
     CDS             1274..>2263
                     /gene="epmA"
                     /locus_tag="VE686_10740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010968468.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004824 - lysine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006430 - lysyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="EF-P lysine aminoacylase EpmA"
                     /protein_id="HYY84958.1"
                     /translation="MQSPSPWWSPERHADRRPMLMARNRVISAIRGWFEARAFTEVET
                     AALQISPGNEAHLHAFATQALSPDGAQTPLYLHTSPEFACKKLLAAGEERIFTLARVW
                     RNRERGALHHPEFTLLEWYRARAPYERLMDDCAGLLGLAAEAAGTKRLTFRGAETDPF
                     AAPERVTLAEAFARFAGMDLLASVDRDGGTDRDGLAAAARDAGIRVAPDDTWADVFSR
                     VLVEKIEPRLGLGRATILYEYPTAQAALARRTAHDPRVAERFELYACGVELANAFGEL
                     TEPAEQRRRFEAEMDEKARVYGERYPIDEDLLAALAQMPEASGGALGLDRLVML"
BASE COUNT          309 a          783 c          832 g          339 t
ORIGIN      
        1 atgttgcagc cggccgtgat ggcgacgtca ccggcgccga tgtcgccgcc gtagagcgcc
       61 gcgaaatgcg ccgcgtaggc ggcgcgcaga tcggcgtcgc cggcgatcgg gccgtagcgc
      121 gtcgcgtcgg tcgatcccgc cgcggtcccg aggcgcgcga ggagctccgg cgggggcggg
      181 tagcctggcg ccgcctggga caggtcgatc aggggtccgt gcgccccgtc gtagcgcttg
      241 agccaggcct gcgcttccgg gatcggcggc gagccgacat cccgcagatg ggggttgatg
      301 gggaggatca tgccggcgtt ctaaccccct ccgagggaac ggcgaaatcg cggacgccgt
      361 ccgccgcgcg cctggtcgtt cgcgcgccat ccctccccgc gaggggaggg cggagtcggg
      421 cgcgtcagcg cccgcccggg tggggcggaa ccacgatgct gatgacgaga ggctttaggg
      481 cttccgcccc accccggtcg cgcgtgaacg cgcgactcgc cctcccctcg cggggaggga
      541 tcgccgagcg ggcgggcgtc agtccttggc gcgctcgacg taggagccgt cggcggtgag
      601 gatgacgatg cgggtgcccg ggctgatgtg cggtggcacc atggcgcggg cgccgttgga
      661 cagggtcgcg ggcttgtagg acgacgaggc ggtctggccc ttcatggccg gctcggtgtc
      721 gaccacctcg aacgtcgccc gctgcggcag ctcgatggcg atcgggatgc cgttgtagac
      781 cgacagcttc accaccatgc cttcctggag gtaggcggcc tgctcgccga tgacgtcgtc
      841 gggaaccgcg agctgctcgt acgtctcggg gttcatgaag tgcgagccct cgccgtcctt
      901 gtagaggaag gtgtggtccc ggtcctcgac gaaggcgcgc tcgacctgct cggtggtgcg
      961 gtagcgctcc gacaccttca cgccatcgga gatgcggcgc atgtcgagct gcgtcaccgg
     1021 cgtgcccttg ccggggtgga tgttctcggc cgagagcacg acgtagagcc ggccgtcggt
     1081 catttcgacg acgttgccct tgcggagcga ggaggcgatg accttcacgg gagagattcc
     1141 ttggaacaga gcgagcccac gcacgccgaa ccgcgcggct tgcgtcgcgc gccggggaag
     1201 ctctaagccg cacctagccg atctcgcccc ggatcgccag ccctcgcggc tgccgttccc
     1261 ctcaaggatt cacatgcaat ccccgtcccc atggtggtcg cccgagcgac acgcggaccg
     1321 caggccgatg ctgatggccc gcaaccgcgt catctcggcc atccggggct ggttcgaggc
     1381 gcgcgccttc acggaggtcg agacggcggc gctgcagatc tcgccgggga acgaggccca
     1441 tctgcacgct tttgcgacgc aggcgctgtc gcccgacggg gcgcagacgc ccctctacct
     1501 ccacacctcg cccgaattcg cctgcaagaa gctgctcgcg gccggggagg agcgcatctt
     1561 caccctcgcc cgcgtgtggc ggaaccggga gcgcggcgcg ctgcaccacc cggagttcac
     1621 cctgctcgag tggtaccgcg cgcgggcgcc ctacgagcgg ctgatggacg actgcgccgg
     1681 gcttttgggc ctcgccgccg aggctgcggg gacgaagcgc ctgacctttc gcggcgccga
     1741 aacggacccc tttgcggcgc ccgaacgcgt gacgctcgcc gaagccttcg cgcgcttcgc
     1801 cggaatggac ctcctcgcga gtgtcgaccg tgatggtggc actgatcggg atggccttgc
     1861 ggctgcggca cgcgatgccg gcatccgggt cgcgccggac gatacctggg ccgacgtgtt
     1921 cagccgcgtc ctcgtcgaga agatcgagcc tcggctgggt ctggggcggg cgacgatcct
     1981 gtacgagtac ccgacggccc aggcggcgct cgcgcggcgg acggcgcacg acccgcgcgt
     2041 ggccgaacgc ttcgagctct acgcctgcgg cgtcgagctc gccaacgcct tcggcgagct
     2101 caccgagccg gccgagcagc gccggcgctt cgaggccgag atggacgaga aggcgcgcgt
     2161 ctacggcgag cgctacccta tcgacgagga tctcctcgcg gcgctcgcgc agatgcccga
     2221 ggcgagcggc ggcgcgctcg gcctcgaccg gctcgtcatg ctg
//
LOCUS       DASQWN010000573         3226 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_153417, whole genome shotgun sequence.
ACCESSION   DASQWN010000573 DASQWN010000000
VERSION     DASQWN010000573.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 3226)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3226)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3226
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_153417"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..596
                     /gene="mutM"
                     /locus_tag="VE686_10745"
     CDS             <1..596
                     /gene="mutM"
                     /locus_tag="VE686_10745"
                     /EC_number="3.2.2.23"
                     /EC_number="4.2.99.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015933357.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0003684 - damaged DNA binding [Evidence
                     IEA];
                     GO_function: GO:0003906 - DNA-(apurinic or apyrimidinic
                     site) endonuclease activity [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_function: GO:0008534 - oxidized purine nucleobase
                     lesion DNA N-glycosylase activity [Evidence IEA];
                     GO_function: GO:0016799 - hydrolase activity, hydrolyzing
                     N-glycosyl compounds [Evidence IEA];
                     GO_function: GO:0019104 - DNA N-glycosylase activity
                     [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006284 - base-excision repair [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="bifunctional DNA-formamidopyrimidine
                     glycosylase/DNA-(apurinic or apyrimidinic site) lyase"
                     /protein_id="HYY84959.1"
                     /translation="DAGAEQTHDHVVLRLSNGATVTYNDARRFGFMDLVPRAEIETCR
                     HFDGMGVEPLGNELSGETIARLFQGKRTPLKAALLDQRLIAGLGNIYVSEALFRARLH
                     PEAPAGSLVTAKAKPRAKAHVLAQVIREVLNEAVEAGGSTLRDFAQADGSLGYFQHRF
                     RVYDREHEPCTAPGCRGTIRRLVQSGRSTFYCAACQR"
     gene            669..1442
                     /locus_tag="VE686_10750"
     CDS             669..1442
                     /locus_tag="VE686_10750"
                     /EC_number="4.2.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019964247.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-CoA hydratase"
                     /protein_id="HYY84960.1"
                     /translation="MAYETILVEKRGRVALVTLNRPQALNALNSTVFRELNAAFDGFD
                     ADPEVGCVVITGSEKAFAAGADIREMQPKTYPATYVEDMFAAWDRVADRRKPMVAAVS
                     GFALGGGCELAMMCDIILAAENAKFGQPEIKLGVMPGAGGTQRLTKAIGKSKAMEMCL
                     SGRMMDAAEAERSGLVSRVLPVADLLPEALRVAETIASMSLPIAMMTKESVNRAFETT
                     LTEGVRFERRLMLAMFATADQKEGMTAFMEKRPAKFENR"
     gene            1442..2440
                     /locus_tag="VE686_10755"
     CDS             1442..2440
                     /locus_tag="VE686_10755"
                     /EC_number="4.3.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018236855.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="threo-3-hydroxy-L-aspartate ammonia-lyase"
                     /protein_id="HYY84961.1"
                     /translation="MTASASVAAPAAVRVPTFDDVAAAAGRIAGIAHRTPVLTSRTFD
                     SRAGARVFFKAENLQRAGAFKFRGACNAIANLDPAARERGVLTFSSGNHGQSLAYAGQ
                     LQGVPVTVLMPQDAPAMKIAATRGYGAEVVHFDRYKDDRDVLGAKLAAERGLTLIPPY
                     DHADVIAGQGTAALELIDEVGDLDVLLAPLGGGGLLAGCALAARQRSPGCRVVGVEPE
                     AGNDGQRSFRSGAVVRIPTPKSIADGALTTHLGEHNFPIIRSLVDDVVTVPDEALVEM
                     MRFFAERMKIVVEPTGCLAAAAVLRAVYPCDGKRVGVVISGGNVDPAAFARFLGEG"
     gene            2607..2873
                     /gene="rpsT"
                     /locus_tag="VE686_10760"
     CDS             2607..2873
                     /gene="rpsT"
                     /locus_tag="VE686_10760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015933959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000312 - plastid small ribosomal subunit
                     [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S20"
                     /protein_id="HYY84962.1"
                     /translation="MANTTSAKKMTRKIAKRTAVNRSRRSRMRTFVRKVEEAIASGDK
                     TAAAEAFRAAQPELMRAAQKGIVHKNAASRKVSRLASRISSLNA"
BASE COUNT          505 a         1148 c         1079 g          494 t
ORIGIN      
        1 gcgacgccgg ggccgagcag acgcatgacc acgtggtcct gcggctctcg aacggcgcca
       61 cggtcactta taatgacgcg cgccgcttcg gcttcatgga cctcgtgccg cgggccgaga
      121 tcgagacctg ccggcatttt gacggcatgg gggtcgagcc cctcggcaac gagctctcgg
      181 gcgagaccat cgcgcgcctg ttccagggaa agcgcacgcc attgaaggcc gccctcctcg
      241 accagcgcct catcgcgggt ctcggcaaca tctatgtgtc ggaggcgctg ttccgggcgc
      301 gcctccatcc cgaagcgccg gcagggtccc tcgtcaccgc aaaggctaag ccgcgcgcca
      361 aggcgcacgt gctcgcgcag gtgatccgcg aggtgctcaa cgaggccgtc gaggccggcg
      421 gctcgacgct gcgcgacttc gcgcaggccg acgggtcgct cggctacttc cagcaccggt
      481 tccgggtcta cgaccgcgag cacgagccct gcacggctcc gggctgccgc ggcacgatcc
      541 gccgccttgt ccagtccggc cgctccacct tctattgcgc cgcgtgtcag aggtgacggc
      601 ggtttcgccc ttgccgtcgc tgccaggctt gcgctagcgc tgtcgcgaac gacgggcagg
      661 aacgctcaat ggcctacgag accatcctgg ttgagaagcg cggcagggtc gcgctcgtca
      721 ccctgaaccg gccgcaggct ctcaacgccc tgaactcgac ggtcttccga gagctcaacg
      781 cggccttcga cgggttcgac gccgacccgg aggttggctg cgtggtcatt accgggtccg
      841 agaaggcctt cgcggcgggc gccgacattc gcgagatgca gcccaagacc tatcccgcaa
      901 cctacgtcga ggacatgttc gccgcctggg accgcgtcgc ggaccggcgc aagcccatgg
      961 tagcggcggt ctcgggcttt gccctcggag gaggctgcga gctcgccatg atgtgcgaca
     1021 tcatcctggc ggccgagaac gcgaagttcg ggcagcccga gatcaagctc ggcgtcatgc
     1081 cgggcgccgg cgggacccag cgcctgacga aggcgatcgg caagtccaag gccatggaga
     1141 tgtgcctcag cgggcgcatg atggacgccg ccgaagccga gcgctccggg ctggtgtcgc
     1201 gggtcctgcc cgtggccgac ctcctgcccg aagcattgag ggtcgccgag acgatcgcgt
     1261 ccatgtcgct gccgatcgcc atgatgacga aggagagcgt caatcgcgcg ttcgagacca
     1321 cgctcaccga aggcgtccgc ttcgagcgcc gcctgatgct cgccatgttc gccaccgccg
     1381 accagaagga gggcatgacc gccttcatgg agaagcggcc cgcaaagttc gagaaccgct
     1441 gatgaccgcc tccgcctccg tcgccgcccc cgcagccgtg cgggtcccga ccttcgacga
     1501 cgtcgccgca gccgccgggc gcatcgccgg catcgctcac cgcacccccg tgctcacgtc
     1561 gcggacgttc gactcacgcg cgggcgcgcg cgtgttcttc aaggccgaga acctgcagcg
     1621 ggcaggggcc ttcaagttcc gcggcgcctg caacgccatt gcgaacctcg acccggcggc
     1681 ccgcgagcgc ggcgttctca ccttctcgtc cggcaatcac ggacagtcgc tcgcctacgc
     1741 ggggcagctc cagggcgtgc ccgtcacggt gctgatgccg caggacgcgc cggcgatgaa
     1801 gatcgcggcg acgcgcggct acggcgccga ggtcgtgcac ttcgaccgct acaaggacga
     1861 ccgcgacgtg ctcggggcga agctcgccgc ggagcgcggc ctgacgctca ttcctcccta
     1921 cgaccacgcg gatgtgatcg ccggccaggg cactgcggct ctggagctta tcgacgaggt
     1981 cggcgacctc gacgtcctcc tggctccgct cggtggcggc ggtcttctcg ccggctgtgc
     2041 gcttgcggcg aggcagcgct cgccgggttg ccgcgtcgtc ggcgtggagc cggaagccgg
     2101 caacgacggc cagcgctcgt tccgctcagg tgcggtggtc cgcatcccga cgccgaagtc
     2161 catcgccgac ggggcgctca ccacccatct cggcgagcac aacttcccca tcatccgcag
     2221 cctcgtcgat gacgtcgtca ccgtccccga cgaggcgctg gtggagatga tgcggttctt
     2281 cgccgagcgc atgaagatcg tcgtcgagcc gacgggctgc ctcgccgccg ctgcggtcct
     2341 gcgcgcggtc tacccctgcg acggcaagcg ggtgggcgtg gtgatcagcg gcggcaacgt
     2401 cgatcccgcc gccttcgcgc gcttcctcgg cgagggctga ggctcgcctg gcgtttcgcg
     2461 ttgacgcatg gagggcgcgt ggctataagc gcgccttcgc gagcccgcct tgaacagcgc
     2521 gggctctcac gtttcatgat cagcagccga tcgcgcttgg ccctctcgca tggcggagcc
     2581 gcggccgtat agaagagggc tcgcccatgg ccaacaccac gtcggccaag aaaatgaccc
     2641 gcaagatcgc caagcgcacg gcggtcaacc gttcacgccg cagccgcatg cggaccttcg
     2701 tccgcaaggt cgaggaggcg atcgcgtcgg gcgacaagac cgccgccgcc gaggccttcc
     2761 gcgccgcgca gcccgagctc atgcgggccg cccagaaggg catcgttcat aagaatgccg
     2821 catcccgcaa agtttcgcgc ctggcgagcc ggatcagcag cctcaacgcc tgatcggtgc
     2881 cgccttcgcg tccgaaaagc ccggcttttg ccgggctttt ttgtggccgc gaggaccacg
     2941 gcgggcgcgc cacaccgcac cgattccgcc gtccaggaac tctggttcgc gctccgttcg
     3001 gcttgaccgc cggccggcaa tgaggggtgc cgagagcgcc cttcggcggg ccttgccgcg
     3061 cagaaataac cattccacgg cagccactta ccagcaaaga cgggggccgc tccgggattc
     3121 gctgataggg cggcgcgaat cgtccgatgt ggacaagtcc ctgtccggca aggccggcgg
     3181 taaacaaaat atgagagccc acaggctttt atgacggccc ggcgac
//
LOCUS       DASQWN010000574         2298 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_351372, whole genome shotgun sequence.
ACCESSION   DASQWN010000574 DASQWN010000000
VERSION     DASQWN010000574.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2298)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2298)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2298
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_351372"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1082
                     /locus_tag="VE686_10765"
     CDS             <1..1082
                     /locus_tag="VE686_10765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010685911.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="SEC-C metal-binding domain-containing protein"
                     /protein_id="HYY84963.1"
                     /translation="SRRIDNQLRGRSGRQGDPGRSKFYLSLKDDLMRIFGSDRMDGML
                     QKLGLEPGEAITHPWINKAIEKAQQKVEARNFDVRKNILKYDNVMNDQRKVVFEQRKD
                     FMGQETVRETVDEMRHGVIDDLVAAHIPPDAYPEQWDVAGLKEAVSQTLNLDAAIEEW
                     AKEEGIADDEIRERLRKASDEAYAERVSKNSAEVMTYVEKQVLLQSLDHLWREHLVTL
                     DHLRQVIGWRGFAQRDPLNEYKSEAFDLFNELVGRLREQVTGQLMRIEVVFQDPEPQG
                     PPAMFAQHLDPLTGENEFASGGSVGLGSPGGYGGLGTALADAPTLTDQRDPRDPSSWG
                     KVGRNEPCPCGSGKKFKHCHGSLVA"
     gene            complement(1141..2058)
                     /locus_tag="VE686_10770"
     CDS             complement(1141..2058)
                     /locus_tag="VE686_10770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019905007.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015288 - porin activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TorF family putative porin"
                     /protein_id="HYY84964.1"
                     /translation="MGRAFKAWMIGGLAVVGWSAAAAAADLGVRRELPPEAVPAPASV
                     AADMLFGVRVQSDYIFRGISQSNRNPSPQSYFELQFLDNLLYAGLAVYRVDLATRPTM
                     EQDWTIGIRPKFGPLQFDFGLIYYNYPSERRLIDPFTNTIWTPANTDMLELAGKVSWT
                     YQDALTLGANAFHAHNWLGTRAPGTYGSLTAKYAFPEAVLGFSGLAVSGELGHYWLGT
                     TSATLGSVRLPDYTYWNAGLSYTWKMLTFDLRYHDTDLSRRDCFTLTSDPRGIFNGSG
                     RSRWCGSTVVGTISVDLQASTLPGIFAPK"
BASE COUNT          406 a          772 c          792 g          328 t
ORIGIN      
        1 agtcgcggcg catcgacaac cagctgcgcg gccgctcggg ccgccagggc gatcccggcc
       61 gctcgaagtt ctacctgtcg ctcaaagacg acctgatgcg catcttcggc tccgaccgta
      121 tggacggcat gctgcagaag ctcggcctcg agccgggcga ggcgatcacg cacccgtgga
      181 tcaacaaggc gatcgaaaag gcgcagcaga aggtcgaggc gcgcaacttc gacgtccgca
      241 agaacatcct caagtacgac aacgtcatga acgaccagcg caaggtcgtc ttcgagcagc
      301 gcaaggactt catgggccag gagacggtcc gggagaccgt cgacgagatg cgccacggcg
      361 tcatcgacga cctcgtcgcc gcccacatcc cgccggacgc ctatccggag cagtgggacg
      421 tcgccggcct gaaggaggcc gtgtcgcaga ccctcaacct cgacgccgcc atcgaggagt
      481 gggcgaagga agaaggcatc gccgacgacg agatccgcga gcgcctgcgc aaggcgtccg
      541 acgaggccta cgccgagcgc gtgtcgaaga actccgccga ggtgatgacc tatgtcgaga
      601 aacaggtgct cctgcagagc ctcgaccacc tgtggcgcga gcatctcgtc accctcgacc
      661 acctgcgcca ggtcatcggc tggcgcggct tcgcccagcg cgatcccctg aacgagtaca
      721 agtcggaggc cttcgacctc ttcaacgagc tcgtcggacg cctgcgcgag caggtgacgg
      781 ggcagctgat gcgcatcgag gtggtgttcc aggatccgga gccgcagggt ccgccggcga
      841 tgttcgcgca gcacctcgat ccgctcaccg gcgagaacga gttcgcctcc ggaggctcgg
      901 tcgggctcgg ctcgccgggc ggctacggcg gcctcggcac ggcgctggcc gacgcgccga
      961 cgctgaccga ccagcgcgac ccccgcgacc cctcgagctg gggcaaggtc gggcgcaacg
     1021 agccctgccc gtgcggctca ggcaagaagt tcaagcactg tcacggcagc ctcgtcgcct
     1081 gaggcacaac gacaaagggc gcccgcgggc gcccttttcg cgttcctctt ccggcgcgcg
     1141 ctacttcggc gcgaagatcc ccggcagcgt gctcgcctgc agatcgaccg agatcgtccc
     1201 gaccaccgtc gagccgcacc agcgcgaccg gcccgagccg ttgaagatgc cgcgggggtc
     1261 ggaggtgagc gtgaagcagt cccgccggga caggtcggta tcgtggtagc gcaggtcgaa
     1321 ggtcagcatc ttccaggtgt acgacaggcc ggcgttccag taggtgtagt cgggcagccg
     1381 caccgagccg agggtcgccg aggtggtgcc gagccagtag tggccgagct cgcccgagac
     1441 cgcgaggccc gagaagccca gcaccgcctc cggaaaggca tacttcgcgg tcagcgagcc
     1501 gtaggtgccc ggcgcgcggg tgccgagcca gttgtgggca tggaacgcgt tggcgccaag
     1561 cgtcagcgcg tcctggtagg tccagctcac cttgccggcg agctccagca tgtcggtgtt
     1621 cgccggggtc cagatcgtgt tcgtgaacgg gtcgatgagc cggcgctcgc tcgggtagtt
     1681 gtagtagatc aggccgaagt cgaactggag aggtccgaac ttcgggcgga tgccgatcgt
     1741 ccagtcctgc tccatggtcg ggcgcgtcgc caggtcgacg cggtagacgg ccagccccgc
     1801 gtacagcagg ttgtcgagga actgcagctc gaagtagctc tgcgggctcg gattgcggtt
     1861 cgactggctg atgccgcgga agatgtagtc gctctggacg cgcacgccga acagcatgtc
     1921 ggcggcgacg gaggcgggcg ccggcacggc ttccggcgga agctcgcgcc tcacgccgag
     1981 gtcggcagct gcggcggccg cgctccagcc gacaacggcg agccccccga tcatccaagc
     2041 cttgaaggct cgccccatcg cacccatcga cctctcctcg cctccaggag gcgcatcgcg
     2101 ccccgcgtcg ccaggacggt gcggaaggcg cggcgggcgg acaatttcat attctgtgca
     2161 actgctgcct tcatgagcaa cgaaggcgac gcagcgcgag aaccggggct ggtgttgcag
     2221 cgcagcaacg tgcccgggac gcaaaaaagg cccgcgctgc gggccttttt gaacgtcgcc
     2281 tcaccgcggc gcgctagt
//
LOCUS       DASQWN010000575         2827 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_549403, whole genome shotgun sequence.
ACCESSION   DASQWN010000575 DASQWN010000000
VERSION     DASQWN010000575.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2827)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2827)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2827
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_549403"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1006)
                     /gene="ispG"
                     /locus_tag="VE686_10775"
                     /gene_synonym="gcpE"
     CDS             complement(<1..1006)
                     /gene="ispG"
                     /locus_tag="VE686_10775"
                     /gene_synonym="gcpE"
                     /EC_number="1.17.7.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018260999.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046429 - 4-hydroxy-3-methylbut-2-en-1-yl
                     diphosphate synthase activity [Evidence IEA];
                     GO_process: GO:0044237 - cellular metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flavodoxin-dependent
                     (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase"
                     /protein_id="HYY84965.1"
                     /translation="MTFEVRSETAGPAPRARTVGVRVGPVTVGGGAPIVVQSMTNTDT
                     ADVDATVAQVAALAQAGSELVRITVDRNEAAAAVPRIRERLERLGVVVPLVGDFHYIG
                     HQLLAAYPACAEALDKYRINPGNVGFKEKKDRQFASIVELAARHGKAIRIGANWGSLD
                     QELLTRLMDANATSAAPLDTRAVTREAMVQSALLSAARAEEIGLPRDRIILSAKVSAV
                     QDLIAVYRELARRSDYALHLGLTEAGMGSKGIVASSAAIGILLQEGIGDTIRYSLTPE
                     PGGDRTLEVKAAQELLQTMGFRTFVPLVAACPGCGRTTSTVFQELARDIQDWISTSMP
                     E"
     gene            complement(1047..1553)
                     /locus_tag="VE686_10780"
     CDS             complement(1047..1553)
                     /locus_tag="VE686_10780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019400506.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Fur family transcriptional regulator"
                     /protein_id="HYY84966.1"
                     /translation="MQDHHHDGACAHAEHQHARGPEALARAETACREKSVRLTPIRRA
                     VLEALYATHRPLGAYDIADALTGMESRRLAPITIYRALEFLMEQGLVHRLASRNAFVA
                     CPHEHGSNDLVAFLICDTCGGVDELSSAGLRRAVSEVLHGQGFEPQLQVLEISGRCAH
                     CRAPADAA"
     gene            1699..2484
                     /locus_tag="VE686_10785"
     CDS             1699..2484
                     /locus_tag="VE686_10785"
                     /EC_number="1.1.1.30"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018259549.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003858 - 3-hydroxybutyrate dehydrogenase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-hydroxybutyrate dehydrogenase"
                     /protein_id="HYY84967.1"
                     /translation="MMLTSKTALVTGSTSGIGLAIARAMAKEGANVVLNGFGDAGEIE
                     SLRAGMEAEFGVKAIHSGADMTKPDEIAAMVRQAQEAFGSLDVLVNNAGIQHVSPVED
                     FPPEKWDQIIAINLSAAFHATRAAVPGMKARKWGRIISTASAHSLVASPFKSAYVTAK
                     HGIAGFTKTVALELATFGITVNCISPGYVWTPLVERQIPDTMKARNMTKVQVINDVLL
                     AAQPTKQFVTVDQVAALAVFLCSDAASQITGANLSMDGGWTAA"
BASE COUNT          439 a          965 c          992 g          431 t
ORIGIN      
        1 attctggcat ggatgtcgag atccaatcct ggatgtcccg cgccagttcc tggaagaccg
       61 tcgaggtggt gcggccgcag cccggacagg ccgccacgag gggcacgaac gtgcggaacc
      121 ccatggtctg caagagttcc tgcgccgcct tgacctcgag ggtgcggtcg ccgcccggct
      181 ccggcgtcag ggagtagcgg atggtatcgc cgatgccctc ctgcaacagg atgccgatgg
      241 ccgccgagga ggcgacgatg cccttggagc ccatgccggc ctccgtgagg ccgaggtgga
      301 gggcgtaatc ggagcgccgc gcgagctcgc ggtagacggc tatgaggtct tgcaccgccg
      361 agaccttggc ggaaaggatg atgcggtctc gggggagccc gatctcctcg gcgcgtgccg
      421 ccgacaggag ggcggattgc accatcgcct cgcgggtgac cgcccgggtg tcgaggggag
      481 ctgcactcgt cgcgttcgcg tccatcaggc gggtcagcag ctcctggtcg agggagcccc
      541 agtttgcgcc gatgcggatg gccttgccgt ggcgcgccgc gagctcgacg atcgacgcga
      601 actggcggtc cttcttctcc ttgaagccga cgttgccggg attgatccgg tacttgtcga
      661 gggcttccgc gcaggccggg taggccgcga gcagctggtg gccgatgtag tggaagtcgc
      721 cgacgagggg cacgaccacg ccaaggcgct caagccgctc gcgaattctc ggaaccgccg
      781 ccgcggcctc gttgcggtcg acggtgatgc gcacgagctc cgagccggcc tgcgcgagcg
      841 ccgccacctg cgccacggtg gcgtcgacgt cggccgtatc ggtgttggtc atcgactgga
      901 cgacgatcgg cgcgccgccg ccgaccgtga ccgggccgac ccgcacgccg acggtgcggg
      961 cgcgtggagc gggcccggcg gtctcgctgc gaacctcgaa cgtcatgacg agccttctac
     1021 gacgggggag gcgcaggcgc caccgctcag gccgcgtccg ccggcgcgcg gcagtgggcg
     1081 cagcgccccg agatctccag aacctggagc tgcggctcga agccctggcc gtgcaggacc
     1141 tcggatacgg cccggcgcag gccagccgac gacagctcgt cgacgccgcc gcacgtgtcg
     1201 cagatcagga aggcgacgag gtcgttcgag ccgtgctcgt gcgggcaggc gacaaaggcg
     1261 ttgcggctcg ccagccgatg cacgaggccc tgctccatga ggaactcgag ggcgcggtag
     1321 atcgtgatcg gcgcaaggcg gcggctctcc atccccgtga gggcgtcggc gatgtcgtag
     1381 gcgccgagcg ggcggtgcgt cgcatagagc gcctcgagga cggcgcggcg gatcggcgtc
     1441 aggcggacgc tcttctcccg gcaggcggtc tcggcccggg ccagcgcctc cggtccgcgc
     1501 gcgtgctggt gctccgcgtg agcgcaggcg ccgtcatggt gatggtcttg cacagccgcc
     1561 cttatgtccc cggcccgctc cccctgcaac ctgctacatc gtcgccccac cccggtggtg
     1621 ttcggtgaca atgcccccgg gtgacttttg cgggctcgcg acctagacgg gcgcagcttt
     1681 gaggcggagt gctgatccat gatgctgaca tcgaagaccg ccctcgtcac cggatcgacc
     1741 agcggcatcg gcctcgcgat cgcccgcgcc atggccaagg agggcgcgaa cgtcgtcctc
     1801 aacgggttcg gcgatgcagg cgagatcgag agccttcgtg ccggcatgga ggccgagttc
     1861 ggcgtcaagg cgatccactc cggggccgac atgacgaagc ccgacgagat cgccgccatg
     1921 gtgcggcagg cgcaggaggc gttcggttcc ctcgacgtgc tcgtcaacaa tgccggcatc
     1981 cagcacgtct cgcccgtgga ggacttcccg cccgagaagt gggatcagat catcgccatc
     2041 aacctgtcgg ccgccttcca tgcgacccgc gcggcggtgc cgggcatgaa ggcgcgcaag
     2101 tggggccgta tcatctcgac ggcgtccgcc cactcgctcg tcgcctcgcc cttcaagtcg
     2161 gcctacgtca ccgccaagca cggcatcgcg ggcttcacca agacggtggc gctcgagctc
     2221 gcgaccttcg gcatcaccgt gaactgcatc agcccgggct acgtctggac gcccctcgtc
     2281 gagcgccaga tccccgacac catgaaggcc cgcaacatga cgaaggtgca ggtcatcaac
     2341 gacgtcctcc tcgccgccca accgacgaag cagttcgtta cggtcgacca ggtggcggcg
     2401 ctcgcggtgt tcctgtgctc cgacgcggcg agccagatca cgggcgccaa cctgtccatg
     2461 gacgggggct ggaccgccgc ctgacggccg gcttcagcct cgcgcctcgg cgccgtcggc
     2521 ggcaaaacgg ttaccgcgca tcatcatgat cgcaagaggg agcgcgtttc gctcgaaatg
     2581 cgcaccatca tgatctttgg agcccggcgg catacgccgg gctccagttg ggtatccaat
     2641 cgtcgcgccg gtcagaagct gagcgcgagc ccgctcacga cacggtagct cggcttcgac
     2701 tgcagcccgt tcatgtggtt cacgaccggc acgccgacgg acacgaaccc cgacaggttg
     2761 gcgtaggacg cgcgcaagcc cggcgagagg tagacggtgt tgccgccgga actccggttg
     2821 ctgatcc
//
LOCUS       DASQWN010000576         2012 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_351438, whole genome shotgun sequence.
ACCESSION   DASQWN010000576 DASQWN010000000
VERSION     DASQWN010000576.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2012)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2012)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2012
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_351438"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..287
                     /locus_tag="VE686_10790"
     CDS             <1..287
                     /locus_tag="VE686_10790"
                     /inference="COORDINATES: protein motif:HMM:NF024770.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="substrate-binding domain-containing protein"
                     /protein_id="HYY84968.1"
                     /translation="SDVQAVGVLEAAQAAGVPVPEQLSVIGFDNVEAAGYTGLTTIAQ
                     PLEETGALGADLLLRALSGDRISGRRMPLHVVRRDSTGPPRLTRAAQEGY"
     gene            325..1647
                     /locus_tag="VE686_10795"
     CDS             325..1647
                     /locus_tag="VE686_10795"
                     /inference="COORDINATES: protein motif:HMM:NF024808.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HYY84969.1"
                     /translation="MRRNRHVALLFGCAALMAGAVASCGGDDDGGGGGGGASSGGGGE
                     AVSGAKVVDLKTEDGAKGNVTYCTGKDTSGDLIAGVKDFNAKNPGITAKLLEFPEQAD
                     QQRAQFIQRQRAKAPDCDVFESDVVWTAEFASQKWLYDLTPLLEKRKSEFIPSTLEST
                     HYGGKYWGVPRSTDSGLLYYNTDQVKSLPATWQAVYADAAKKKGIVYQGSSYEGLTVN
                     FLEIAFAAGGKVLSDDGKKSEFDSPENLKALQFMVDGIKNGAAPKAVTTYDEEAARRA
                     FEAERATYERQWPYAYALGNLKGSKVKGKFKVAPYPPFEGGGKAAILGGHNMVISAYS
                     KNPGAALKLIDYFTGPEVMKRAAVKWSKAPVLAQTYDDPAVKKALPFADQLKQSVEQA
                     KSRPVSPVYTQISQAIYKNVNEALSGSTDPKAALKKADDQINSALATF"
     gene            1657..>2012
                     /locus_tag="VE686_10800"
     CDS             1657..>2012
                     /locus_tag="VE686_10800"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY84970.1"
                     /translation="MEAATVKAGTPTKRRSRGLSERRLAAAMVSPSMILIAIVAAYPI
                     IYAIWLSLHEYSVRVAGLQRWAGPFGMRNYSNALQDPDFWAAFKTTFIFTGASVVLET
                     LLGLAMALAMHSAFKG"
BASE COUNT          361 a          662 c          705 g          284 t
ORIGIN      
        1 cctccgacgt ccaggcggtc ggggtgctgg aggcggcgca ggccgcaggt gtcccggtgc
       61 ccgagcagct ctcggtcatc ggcttcgaca acgtggaggc cgcggggtac acggggctga
      121 ccacgatcgc gcagccgctg gaggagaccg gcgccctcgg cgccgacctg ctgctgcgcg
      181 cgctctccgg cgaccggatc tccggacgcc ggatgccgct gcacgtcgtg cggcgggatt
      241 cgaccggacc gcccaggttg acgcgggcgg cccaagaggg gtactgatgg cagacgagaa
      301 ccgaccacta ggaggagggg ttcagtgaga aggaatcgac acgtcgcgct gctgttcgga
      361 tgcgcggcac tgatggccgg cgccgtagcc agctgcggcg gcgacgacga cggcggcggc
      421 gggggcggcg gcgccagctc cggcggcggc ggcgaagcgg tcagcggcgc gaaggtcgtc
      481 gacctcaaga ccgaggacgg cgccaagggc aacgtcacct actgcacggg caaggacacg
      541 tcgggcgacc tgatcgccgg cgtgaaggac tttaacgcga agaacccggg gatcacggcg
      601 aagctgctcg agttccccga gcaggccgac cagcagcgcg cccagttcat ccagcgtcag
      661 cgcgccaagg ccccggactg cgacgtcttc gagtccgacg tcgtctggac ggcggaattc
      721 gcgtcgcaga agtggctcta cgacttgacg ccgctcctcg agaagcgcaa gtccgagttc
      781 atcccctcga cgctcgagtc gacgcattac ggcggcaagt actggggcgt cccgcgctcg
      841 accgactcgg gcctcctcta ctacaacacc gaccaggtca agtcgctccc cgccacgtgg
      901 caggccgtct acgccgacgc ggccaagaag aagggcatcg tctaccaggg ctcgtcgtac
      961 gagggcctga ccgtgaactt cctcgagatc gcgttcgcgg cgggcggcaa ggtgctctcc
     1021 gacgacggca agaagtcgga gttcgactcg ccggagaacc tgaaggcgct gcagttcatg
     1081 gtcgacggga tcaagaacgg cgcagccccg aaggcggtga cgacctacga cgaggaggcc
     1141 gctcgccgcg ccttcgaggc cgaacgcgcg acgtacgagc gccagtggcc gtacgcgtac
     1201 gcactgggga atttgaaggg ctcgaaggtc aagggcaagt tcaaggtcgc tccgtatccg
     1261 ccgttcgagg gcggcgggaa ggcggcgatc ctcggtggcc acaacatggt catctcggcc
     1321 tactcgaaga acccgggcgc ggccctgaag ctgatcgact acttcaccgg acccgaggtc
     1381 atgaagcggg cggcggtgaa gtggtccaag gccccggtgc tcgcccagac ctatgacgac
     1441 ccggccgtca agaaggcgct gccgttcgcc gaccagctca agcagtcggt cgagcaggcc
     1501 aagtcgcgtc ccgtctcgcc ggtctacacg cagatctcgc aggcgatcta caagaacgtc
     1561 aacgaggcgt tgtccgggtc gacggatccg aaggcggcac tgaagaaggc cgacgaccag
     1621 atcaacagcg ccctggcgac gttctagggg cgaatgatgg aagcggccac cgtaaaggcc
     1681 ggcacgccca ccaagcggcg ctcccgagga ctctcggagc gccgcctggc ggcggccatg
     1741 gtctcgccgt cgatgatcct gatcgcgatc gtcgcggcgt acccgatcat ctacgcgatc
     1801 tggctgtcgt tgcacgagta cagcgtgcgc gtggccgggc tgcagcgctg ggccgggccg
     1861 ttcggcatgc gcaactactc gaacgcgctc caggacccgg acttctgggc cgcgttcaag
     1921 acgacgttca tcttcaccgg ggcctcggtg gtactggaga cgctgctcgg cctggcgatg
     1981 gcgctggcca tgcactccgc cttcaagggc ca
//
LOCUS       DASQWN010000577         4207 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_256970, whole genome shotgun sequence.
ACCESSION   DASQWN010000577 DASQWN010000000
VERSION     DASQWN010000577.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 4207)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4207)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4207
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_256970"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..630
                     /locus_tag="VE686_10805"
     CDS             <1..630
                     /locus_tag="VE686_10805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018272787.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_function: GO:0004673 - protein histidine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAMP domain-containing sensor histidine kinase"
                     /protein_id="HYY84971.1"
                     /translation="MIKTNLDKVVQHGRRADSIVKNMLLHSREGTGERRSVDLNATAE
                     ESLNLAYHGARAEKPNFNVTLKTELDPAVGSVEIYPQEFVRVLLNLISNGFYAAHKRK
                     NQDGTDASFEPTLSLTTKGYPDRVEIRVRDNGTGIPEEIKEKMFNPFFTTKPAGEGTG
                     LGLSLSYDIIVKQHGGTIEVDTKPGEFTEFTIALPRPVGPATADLRRAS"
     gene            627..1034
                     /locus_tag="VE686_10810"
     CDS             627..1034
                     /locus_tag="VE686_10810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012335002.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HYY84972.1"
                     /translation="MTVRILVVDDESDIEMLFKQQFRRELREGRFVLDFAGSGDEALA
                     KMKANGAGSLILLVSDINMPGMSGLDLLVRIKEERPDLPVLMITAYGDASTRKVALER
                     GADGLLTKPLDFSALRAEIQARVAGGAAGAVGP"
     gene            1031..2278
                     /locus_tag="VE686_10815"
     CDS             1031..2278
                     /locus_tag="VE686_10815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018648151.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009190 - cyclic nucleotide biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0035556 - intracellular signal transduction
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenylate/guanylate cyclase domain-containing
                     protein"
                     /protein_id="HYY84973.1"
                     /translation="MTKILVVDDEPDLEALVVQRFRRQIRDGSVSFVFAHDGVEALAV
                     LAENRDLDMVVSDINMPRMDGLSLLQKLQETDEKPSTVIVSAYGDMANIRTAMNRGAF
                     DFLTKPIDFADFESTIAKTVRHVEVLRDARRRLAEAERAHASLSRYFSPALAVQLAGG
                     GHGLDLGGQRREVAALFTDIAGFTTLAETLDPSLLGALLNDYLEGMTDTVFAHDGTVT
                     KIVGDAVHVLFGAPSDQPDHATRAVACALALDASAEAFRERWRERGVEVGVTRIGVHA
                     GPAIVGNFGGGRFFDYTAYGDTINTAARLETVNKQLGTRLCVSAAVAERAEDFRGRPI
                     GDLVLRGRTEPLRAYEPLTAREFDEAATGLYLSAFAKLEGNEAGAMPAFAALLGMREN
                     DCLASFHLKRLLNGGKGTRIATD"
     gene            complement(2292..2537)
                     /locus_tag="VE686_10820"
     CDS             complement(2292..2537)
                     /locus_tag="VE686_10820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007601192.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY84974.1"
                     /translation="MQSGVLLIWLGALLVIAGVVQTALQPMLRGRLSGHRGTSDGAGR
                     ETLEPAQPARGFSLRANWPGLAMIGAGAAVLLLSAAF"
     gene            3169..3729
                     /locus_tag="VE686_10825"
     CDS             3169..3729
                     /locus_tag="VE686_10825"
                     /inference="COORDINATES: protein motif:HMM:NF025731.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="superinfection immunity protein"
                     /protein_id="HYY84975.1"
                     /translation="MIQELNRLRRELQELDAKYRSELKWRIAAERHEAKPRSAIEGAQ
                     TEPQDATRRLKRAPESADAAPLPSPTALEHGARSSSRRYRMLLAAALLLAVVAGAALV
                     WPELAQVLSPYGTGLISAGLALALASTPLLALMLYFGPSFLAGYQQHARAPAIFAINL
                     CLGWTIVGWLGALAWSTSTPVSDDRR"
BASE COUNT          742 a         1395 c         1387 g          683 t
ORIGIN      
        1 atgattaaaa ctaacctcga caaggtcgtc cagcacggtc gccgggccga ctccattgtc
       61 aagaacatgc tgctgcactc gcgcgagggc acgggcgagc gccgcagcgt cgatttgaac
      121 gcgaccgccg aggagagtct caacctcgcc tatcacggcg ccagggccga aaagccgaac
      181 ttcaacgtca ccctcaagac ggagctcgat ccggctgtcg gctcagtcga gatctatccg
      241 caggaattcg tccgggtgct gctcaacctc atctcgaacg ggttctatgc cgcgcacaag
      301 cgcaagaacc aggacgggac cgatgcgtcc ttcgagccta cgctgtcgct cacgaccaag
      361 ggttatccgg acagggtgga gatccgcgtg cgcgacaacg gcacgggcat tcccgaggag
      421 atcaaggaga agatgttcaa tcccttcttc acgacgaagc ccgccggcga gggcaccggg
      481 ctcgggctct cgctcagcta tgacatcata gtgaagcagc acggcggcac catcgaagtg
      541 gacaccaagc ccggcgagtt cacggaattc acgatcgcgc tgccgcggcc tgtcggcccg
      601 gccacggccg atctgcggag agcgtcatga ccgtccgcat cctcgtcgtc gacgacgaaa
      661 gcgacatcga gatgctgttc aagcagcagt tccggcgcga gctgcgcgaa ggccgctttg
      721 ttctcgactt cgcaggctcc ggtgacgagg ccttggccaa gatgaaggcg aacggcgcgg
      781 gtagcctgat cctgctcgtc tcggacatca acatgccggg catgagcggg ctcgacctcc
      841 tggtgcgcat caaggaggaa cgcccggacc tccccgtcct catgatcacg gcgtacggcg
      901 acgccagcac tcgcaaggtg gctctcgagc ggggcgccga cggcctgctg acgaagcccc
      961 tcgatttctc ggcgcttagg gccgagatcc aggcgcgtgt cgccggcggc gcggccgggg
     1021 ccgtcggccc atgaccaaga ttctcgtggt cgacgacgag cccgatctag aggcgctcgt
     1081 cgtgcagaga ttccgccgtc agatccgcga cgggagcgtc agtttcgtgt tcgcccacga
     1141 cggggtggag gccttggcgg tgctcgccga gaaccgcgat ctcgatatgg tcgtgagcga
     1201 catcaacatg ccccggatgg acgggctgtc gctcctgcag aaactccagg agaccgacga
     1261 gaaaccttcg actgtcatcg tctcggccta tggcgacatg gctaacatcc gcaccgcgat
     1321 gaaccgcggg gctttcgact tcctgacgaa gcccatcgac ttcgccgatt tcgagagcac
     1381 gatcgccaaa acggtccgtc atgtggaggt gctgcgcgac gcgaggcgac gcctcgccga
     1441 ggccgagcgc gcgcacgcat cgttgtcgcg ctacttctcg cccgcccttg cggtccaact
     1501 cgcgggcggg ggccacggcc tcgatctcgg aggacagcgt cgcgaggtcg ccgcgctgtt
     1561 cacggacatt gccgggttca cgacgctcgc cgagaccctg gatccgagcc tcctgggggc
     1621 gcttctcaac gactatctcg agggcatgac cgacaccgtc ttcgcccacg acggcacggt
     1681 gacgaagatc gtcggcgacg cagtccacgt cctatttggc gctccgagcg atcagccaga
     1741 ccacgccacc cgggccgttg catgcgctct ggcgctggac gcctcggctg aggcattccg
     1801 ggagcgctgg cgcgagcgcg gggtcgaggt cggggtgacc cgcatcggcg tgcacgccgg
     1861 gccggcgatc gtcggcaact tcggcggcgg ccgcttcttc gactacacgg cgtacggcga
     1921 caccatcaac accgccgcgc ggctcgagac cgtcaacaag cagcttggga cacgcctgtg
     1981 cgtcagcgcc gccgtcgccg agcgggcgga ggactttcga ggacggccca tcggcgacct
     2041 cgtcctgcgc ggccggaccg aaccgctgcg ggcgtacgag cccttgacgg cgcgggagtt
     2101 cgacgaggcc gcgaccgggc tctacctgag cgcgttcgca aagctcgaag gcaacgaggc
     2161 gggcgccatg ccggcgtttg cggccctgct cggcatgcgc gagaacgact gcctcgcaag
     2221 cttccacctg aaacgcctgc tgaatggcgg caaggggacc aggatcgcga ccgactgaga
     2281 tttggatgcg atcagaaggc ggccgagagc aacagcaccg ctgcgccggc gccgatcatg
     2341 gcgagccctg gccagttcgc gcgcaagctg aagccccggg ccggctgcgc cggctcgagc
     2401 gtctcccggc ctgcgccgtc ggaggtgccg cggtggccac tgagccgccc tcgcagcata
     2461 ggctgcaaag ccgtttgcac gacccctgca atgaccagca gggcccctag ccagatcagc
     2521 agcacaccag attgcacggc acgcctcccc aggtgacctt aggtcatggt agcgaggttt
     2581 gtgccccacg ggaatggagt tcggcgcgac cgcgacggcc gaggaatggc ggcagggggc
     2641 acgccgctcc cgagccgcgc aggggtctac cggaacgcga gcagggccag gggtccggcg
     2701 aggcctacga ccagcccgag cgtgaagaca agagaagcgg gggtacggtt acgcatggtg
     2761 cctactccac tcacgcccca acggtaactc tgacgccctg aggtccgttg aaggcgaaag
     2821 ctcaaattgt aacgattcga ccgcacgacc ctggagcctg ggcgatctcc gacgatcgcg
     2881 cctcggttga gcggctcgat tccatgccgg agtgcttgcg ctgcagcccg atctgaacga
     2941 ccgttcgcaa gcgaacggcc ggcggcaagc atctgccggc gccgatacat cgcggagggg
     3001 ggccgagtgg cgtggcttgg ggaagatctg cctcggctga caggcgcgct cttcgacgat
     3061 gcccgtcatc tcgccgaggc gagccctact cacgccgtgg gctttgcggc cgccatcaca
     3121 gttgttgcct tcgtcggatg gctgcgggct gcccgccggg gaaagcactt gatccaagag
     3181 ctcaatcggc tgcggcgcga gctccaggag ctggacgcca agtaccgcag cgaactgaag
     3241 tggcgcatcg cagccgagcg gcatgaggcg aagcccagaa gtgcgatcga gggtgctcaa
     3301 accgagcctc aggatgccac gaggcgcctg aaacgagcac ctgaaagcgc tgatgcggcg
     3361 ccgctccctt cgccaacggc cctcgagcac ggcgcacgca gctcgtcccg gcggtaccgc
     3421 atgctcctgg cggccgcctt gctgctagct gtcgtggcag gagcggccct ggtatggccg
     3481 gagttggccc aagttctgtc gccctacggc accggcttga tctcggcggg gcttgctctc
     3541 gctctggcgt cgaccccgct cctagctctg atgctgtact tcgggccctc gttcctggcc
     3601 ggatatcaac aacacgcacg cgcgcccgcc atcttcgcca tcaacctttg tctcggctgg
     3661 accatcgtcg ggtggctcgg cgcgctcgct tggtccacca gcacgcccgt ctcggatgac
     3721 cgcagatgaa gcgctgcggc gaccttacca agctttggtg cgacagcttc atagtcgttc
     3781 ggaactggcc cacagcgctc gcgttggaaa gaggaggtgg aggtcgatga gcgatgtatg
     3841 ggccgcagtc tccgggtaat gcgcaggata caacgcttat gttcgtgctc ggcgttgcag
     3901 taggggcagc cgttccattg ttcctgtttg ccgtcggcta gccacgccat ccttcaagaa
     3961 ggctcgacct cgacctcgac cgcggccgct aacggctaag cgacgatact gtagcgctgc
     4021 aggtgctgcg cggcgtggat cagcgaggga acggtgcccc gggtctcggc gagtcggtga
     4081 tggcctgccg gtccaacggt gccacaacga agggctttag aacgttgtca cctttcctgc
     4141 cgggatcccg cgcgatgctg ggccgtccgc ttgcactcgc cgggtccagc gtacccacgt
     4201 acaggtg
//
LOCUS       DASQWN010000578         2076 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_257053, whole genome shotgun sequence.
ACCESSION   DASQWN010000578 DASQWN010000000
VERSION     DASQWN010000578.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2076)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2076)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2076
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_257053"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            14..2068
                     /locus_tag="VE686_10830"
     CDS             14..2068
                     /locus_tag="VE686_10830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012029524.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor G"
                     /protein_id="HYY84976.1"
                     /translation="MATNGRSAAGPRCIAIVGPFQSGKTTLLESILERTGAIERAGRM
                     STGNTVGDASAEARGHAMSVEPNVATVTFLGETMTFLDCPGSVEFQHDMRAIAPVCDA
                     AIVVCEADDRKIPALEIVLRELEEAQIPRILFVNKIDTASRRLRETVAALQKASRTPL
                     LLRQIPIWKDGTAVGFIDLALERAFIYREHAPSDAVALPEDELPREKEARFSMLERLA
                     DHDDALMEDLISEVEPPKDRVFEDLRKEMCDGKVVPVLIGSADRGNGVTRLLKAIRHE
                     APALTETRARLGVEASGSPVAQVVKTLHTAHGGKLSIARVLRGSFKEGDTVVGSRGAE
                     ARIAGLVSLSGSHTTRVPDAKEGATVGFARLEGIATGDAFATGKTRPEAILSIAPPEP
                     VYAMAIKVKDRKDDVRLSSAITKIIEEDPALALETRPEIGEMRLLGQGEMHLRMAVER
                     LASRFQVGVETAKPRVGYAETIKGSASARGRHKKQTGGHGQFGDVVIEVQGLPRGEGF
                     VFHDKITGGVVPRQYIPSVETGVRDFVKKGPLGFPVVDVAVTLTDGSYHTVDSSDAAF
                     QSAAKLAMAEALPKAKPVLLEPILSVEIAIPSEALSKATGLVTARRGQILGYDARPGF
                     EGWEVLNAMIPKSEIGDLIVELRSATAGVGTFSTKFDHMAELTGRPADEVLASAKAAA
                     AH"
BASE COUNT          334 a          745 c          723 g          274 t
ORIGIN      
        1 gaaaggacgg atcatggcaa cgaacggcag atcagccgcg gggccgcgat gcatcgccat
       61 cgtcggcccc ttccagagcg gcaagaccac ccttctcgaa tccatcctcg aacgtaccgg
      121 cgccatcgag cgcgccggcc ggatgtcgac cggcaacacg gtgggcgacg cgagcgccga
      181 ggcccgcggc cacgccatga gcgtcgagcc gaacgtcgcg acggtgacct tcctcggcga
      241 gaccatgacg ttcctcgact gcccgggctc cgtcgagttc cagcacgaca tgcgcgccat
      301 cgcgccggtg tgcgacgccg ccatcgtggt gtgcgaggcc gacgaccgga agatcccggc
      361 gctcgagatc gtgctccgcg agctcgagga ggcgcagatc ccgcgcatcc tgttcgtcaa
      421 caagatcgac accgcgtcgc ggcgcctgcg cgagaccgtg gcggcgctgc agaaggcctc
      481 gcgtacgccg ctgctcctgc gccagatccc gatctggaag gacggcaccg ccgtcggctt
      541 catcgacctc gcgctcgagc gcgccttcat ctaccgcgag cacgcgccga gcgacgccgt
      601 cgcgctgccg gaggacgagc tgcctcggga gaaggaagcg cgcttctcca tgctcgagcg
      661 cctcgccgat catgacgacg ccctcatgga ggacctcatc tccgaggtcg agccgcccaa
      721 ggaccgcgtc ttcgaggacc tgcgcaagga gatgtgcgac ggcaaggtcg tgccggtgct
      781 gatcggctcg gcggaccggg gcaacggcgt cacgcggctt ctgaaagcca tccgtcacga
      841 ggcgccagcc ctcaccgaga cccgcgcgcg gctcggcgtc gaggcgagcg gcagcccggt
      901 cgcgcaggtg gtcaagaccc tgcacacggc gcacggcggc aagctgtcca tcgcgcgcgt
      961 gctgcgcggc tcgttcaagg aaggcgacac cgtcgttggc tcgcgcggcg ccgaagcgcg
     1021 catcgccggg ctcgtctcgc tctcagggag ccacaccacg cgcgtgccgg acgccaagga
     1081 gggcgcgacg gtcggcttcg cgcggctcga gggcatcgcc accggggacg ccttcgcgac
     1141 cggcaagacg cggccggagg cgatcctgtc gatcgcgccg cccgagcccg tctacgccat
     1201 ggccatcaag gtcaaggacc gcaaggacga cgtgcgcctg tcgagcgcca tcaccaagat
     1261 catcgaggag gatccggcgc tcgccctcga gacgcggccc gagatcggcg agatgcgcct
     1321 cctcggccag ggcgagatgc acctgcgcat ggcggtggag cgcctcgcct cgcgcttcca
     1381 ggtcggggtc gagacggcaa agccccgggt cggctacgcc gagaccatca agggctcggc
     1441 ctcggcgcgc ggccggcaca agaagcagac cggcggccac ggccagttcg gcgacgtggt
     1501 catcgaggtc caggggctgc cgcgcggcga gggcttcgtg ttccacgaca agatcaccgg
     1561 cggcgtggtg ccgcggcagt acatcccctc cgtcgagacg ggggtgcgcg acttcgtcaa
     1621 gaaaggcccc ctcggcttcc ccgtggtgga cgtcgcggtg acgctgaccg acggctcgta
     1681 ccacaccgtc gattcatcgg acgcggcctt ccagtcggcc gcgaagctcg ccatggcgga
     1741 ggccctgccg aaggcgaagc ccgtgctgct cgagccgatc ctctcggtcg agatcgccat
     1801 tccgtccgag gccttgtcga aggcgacggg cctcgtcacg gcgcggcgcg ggcagatcct
     1861 cggctacgac gcgcgtccgg gcttcgaggg ctgggaggtc ctcaacgcca tgatccccaa
     1921 gtcggagatc ggcgacctca tcgtcgagct gcgctcggcg acggcgggtg tcggcacctt
     1981 ctcgacgaag ttcgaccaca tggccgagct caccggccgc cccgccgacg aggtgctcgc
     2041 gagcgcgaag gccgccgcgg cgcactgagg cacgcg
//
LOCUS       DASQWN010000579         2494 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_257096, whole genome shotgun sequence.
ACCESSION   DASQWN010000579 DASQWN010000000
VERSION     DASQWN010000579.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2494)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2494)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2494
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_257096"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..512)
                     /locus_tag="VE686_10835"
     CDS             complement(<1..512)
                     /locus_tag="VE686_10835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009763385.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-formylglutamate amidohydrolase"
                     /protein_id="HYY84977.1"
                     /translation="MPSAVARRLDPSVAPHPVEEIAGRVASGALILCDHASNAVPPEL
                     GDLGLTADQFERHIAYDIGAAAVTRELARLLDAPAVLTRFSRLVIDPNRGRDDPTLVM
                     RLSDGAVVPGNARVDEAEVARRVARFYDPYEAAITAAIDRALRAGHPPCIVAVHSYTP
                     VWRGWPRPWHV"
     gene            730..1038
                     /locus_tag="VE686_10840"
     CDS             730..1038
                     /locus_tag="VE686_10840"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY84978.1"
                     /translation="MALQRIDDFDQAYFQTVIGACFQAIARTTLDGESERVRPTEISA
                     ALAHVMGMIAATTDARAAHDPRALAEEIAAEFLDSFRAARESLDACAAVSGPGVARAA
                     "
     gene            1202..>2494
                     /locus_tag="VE686_10845"
     CDS             1202..>2494
                     /locus_tag="VE686_10845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010686905.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MDR family MFS transporter"
                     /protein_id="HYY84979.1"
                     /translation="MDAAAPRQRLTHREIRSIIFGIMLAMLLAALDQTIVATALPTIG
                     RELGDVEHLPWVVTANLLAATAVTPLYGKFSDIHGRRITLLIGITTFVVGAVACALAP
                     TMILLILARGLQGLGGGGLISLAQTIIADVVAPKERGRYQVYIASVFMAASVLGPVLG
                     GFFAEHLHWSAIFWLDVPLGALALWMAYASLRHLPRHERRHRLDLLGAVLLVGATVTL
                     MLALSWGGRHYPWTSREILGLVTASALLWALFALRQRTAREPLIPLDVLRNPVVRSGT
                     LSACFAMGVYIGLTIYLPIYFEGVRGMTSSQSGLCLIPLMLGTVVGATTSGNVMARFR
                     HYKRLPTAGLLAAMAGTGILAASAPQLPLLWIEVTLATISLGLGTLLPVTTVSIQNAV
                     AVHDLGTATGTANFFRSLGGAIIVAVFGAIVLGFTGATG"
BASE COUNT          322 a          921 c          858 g          393 t
ORIGIN      
        1 acatgccagg ggcgcggcca gccacgccac accggcgtat agctgtggac cgcgacgatg
       61 cagggcgggt gccccgcccg cagcgcccgg tcgatcgccg ccgtgatcgc ggcctcgtag
      121 ggatcgtaga agcgggcgac gcgccgcgcc acctcggcct cgtcgacgcg cgcattgccg
      181 ggcacgacgg ctccgtccga gagccgcatg accagggtcg ggtcgtcgcg gccgcggttc
      241 ggatcgatga cgaggcgcga gaagcgcgtc agcaccgcgg gcgcgtcgag gagccgcgcg
      301 agctcgcgcg tcaccgccgc cgcgccgatg tcgtaggcga tgtggcgctc gaactggtcg
      361 gccgtgaggc cgaggtcgcc gagctccggc gggacggcgt tcgaggcatg gtcgcacagg
      421 atcagcgcac ccgacgcgac gcggcccgcg atttcctcga cggggtgcgg agcgaccgat
      481 gggtcgaggc ggcgggcgac ggctgacggc atcaaggcct tgtcgtgacg gcttttgtcg
      541 aagggaggac cggcgcttaa cctgccctgg gagtgctggc aacgctaagg gcgcggcggt
      601 ccccgcaacc cacagacccg gcctcaagcg cctgcgcgcg atcgccgacc ggcgctgtgc
      661 tcaggtggcg ttagcacctt gtttacgacg gcttgcgagg gtcgacctcg ttcgagcggg
      721 gagacgtgcg tggcgttgca gcggatcgac gatttcgacc aggcgtattt ccagaccgtc
      781 atcggcgcct gcttccaggc gattgcgcgc accaccctcg acggcgagtc ggagcgggtc
      841 cgaccgacgg agatcagcgc cgcgctcgcg cacgtcatgg gcatgatcgc cgcgacgacg
      901 gacgcccggg cggcgcacga cccccgagcc cttgcggagg agatcgccgc cgagttcctc
      961 gacagcttcc gcgccgcccg cgagtctctc gacgcctgcg cagccgtgtc gggcccgggc
     1021 gtcgcccgcg cggcctgacc cttccctgtt acctcgcggc cgcgaggatc cattggccac
     1081 cggctttgcc gatccataaa gggtgccccc cggcgcgggc atgaccgagg gtctccggcc
     1141 ctatcgggcg ggcgtcggcc ccgctatgtg tccgcgctcc gtgcagccag cagcaggacc
     1201 gatggacgcc gccgcgccgc gacagcgcct gacgcaccgc gagatccgct cgatcatctt
     1261 cggcatcatg ctcgccatgc tgctcgcggc cctcgatcag accatcgtgg cgacggcgct
     1321 gccgaccatc gggcgcgagc ttggcgacgt cgagcacctg ccctgggtcg tcaccgccaa
     1381 cctcctcgcc gcgacggcgg tcacgcccct ctacggcaag ttcagcgaca tccacggccg
     1441 ccggatcacg ctcctcatcg gcatcaccac cttcgtggtc ggtgccgtcg cgtgcgcgct
     1501 tgcgccgacc atgatcctcc tgatcctcgc ccgcgggctg cagggcctag gaggcggcgg
     1561 cctgatctcg ctcgcccaga ccatcatcgc cgacgtggtc gcgccgaagg agcgcgggcg
     1621 ctaccaggtc tacatcgcga gcgtgttcat ggccgcgagc gtgctcgggc cggtgctggg
     1681 cggcttcttc gccgagcacc tgcattggtc ggcgatcttc tggctcgacg tgccgctcgg
     1741 cgccctcgcg ctctggatgg cttacgcgag cctgcgtcac ctgccgcgcc acgagcggcg
     1801 acaccggctc gacctgctcg gcgccgtgct cctcgtcggc gcgaccgtga cgctgatgct
     1861 ggccctgagc tggggcgggc ggcattaccc ttggacgtcg cgcgagatcc tcggcctcgt
     1921 caccgcctcg gcgctcctgt gggccctttt cgccctgcgc cagcgcacgg cgcgcgagcc
     1981 gctcatcccc ctcgacgtgc tgcgcaaccc cgtcgtgcgc agcggcacgc tgtcagcctg
     2041 cttcgccatg ggcgtgtaca tcgggctcac catctacctg ccgatctatt ttgagggcgt
     2101 ccggggcatg acctcgagcc agtcgggctt gtgcctgatc ccgctgatgc tcggaaccgt
     2161 cgtcggcgcg acgacgtccg ggaacgtcat ggcgcgcttc cggcactaca agcgcctgcc
     2221 gacggccggg ctccttgccg ccatggcggg gaccggcatc ctcgcggcct ccgcgccgca
     2281 gctgcccctg ctttggatcg aggtgacgct cgcgaccatc agcctcggcc tcggcacgct
     2341 gctcccggtg acgaccgtgt cgatccagaa cgcggtggcc gtccatgatc tcggtacggc
     2401 gacgggcacc gccaacttct tccgctccct cggcggcgcg atcatcgtcg cggtgttcgg
     2461 cgccatcgtg ctcggcttca ccggcgcgac gggc
//
LOCUS       DASQWN010000580         2152 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_257121, whole genome shotgun sequence.
ACCESSION   DASQWN010000580 DASQWN010000000
VERSION     DASQWN010000580.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2152)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2152)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2152
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_257121"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..457)
                     /locus_tag="VE686_10850"
     CDS             complement(<1..457)
                     /locus_tag="VE686_10850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019400113.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldo/keto reductase"
                     /protein_id="HYY84980.1"
                     /translation="MLTPLVHANGAAIPAIGLGTWPMKGEEAARAVARALETGYRAVD
                     TAAMYGNEDAVGQGLRAAGVPRADVFVTTKVWYTDLAPAALQRSAEASLKRLGLDQVD
                     LLLIHWPSPDIPLEGSIAALCEATRHGLARHVGVSNFPVALLDRAVSLAT"
     gene            complement(496..1248)
                     /locus_tag="VE686_10855"
     CDS             complement(496..1248)
                     /locus_tag="VE686_10855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019400112.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aspartyl/asparaginyl beta-hydroxylase
                     domain-containing protein"
                     /protein_id="HYY84981.1"
                     /translation="MVRPGLVTLFFMRVVAFAERLNLKYAKLGNPPVYDNTVFPWVAG
                     IEREWDKIRAELERVLERQDELPTFQSISTDVASITKDAHWKTFFLAGFGLSSERNIA
                     QCPETWRIVQTIPGLKTAMFSIFEPGKHLPAHRGPYNGVLRLHLGLIVPDVGPDKLAI
                     RVHDRVCTWQEGKALVFDDAYEHEAWNHSDRTRVVLFVDFVKPTRFPANFANWALMNL
                     AVFTPFIREGLDNHKAWEQRFYAEAETLRNRK"
     gene            complement(1412..2029)
                     /locus_tag="VE686_10860"
     CDS             complement(1412..2029)
                     /locus_tag="VE686_10860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012330363.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_process: GO:0006749 - glutathione metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione S-transferase family protein"
                     /protein_id="HYY84982.1"
                     /translation="MITLWGRKNSINVQKALWCLEELGLAYERIDAGRGYGVTDTAEY
                     GRRNPNRLVPTLEDDGFVLWESNAIVRYLCAKHSAGTLWATDPRARAEADRWMDWQAT
                     AFTPAFGPIFHGLVRTPGSRSREEIDAAIAQSEAYAAILDAQLADRRYVTGETFTMGD
                     IPAGAAAFRWLNLPIDRQPRPNVERYVADLLSRPAAERVLILPLT"
BASE COUNT          335 a          695 c          767 g          355 t
ORIGIN      
        1 cggtggcgag cgacacggcg cggtcgagga gggcgacggg gaagttagag acgccgacgt
       61 gccgcgcgag gccgtgccgc gtcgcttcgc acaacgctgc aatcgagccc tcgaggggga
      121 tgtcggggct cggccagtgg atcaggagga ggtccacctg atcgaggccg agccgcttga
      181 ggctcgcctc cgccgagcgc tggagggcgg ccggtgcaag gtcggtgtac cagaccttgg
      241 tcgtgacgaa gacgtcggct cgcggcacgc ccgcggcgcg caggccttgg ccgacggcat
      301 cctcattgcc gtacatggcg gcggtgtcga cggcccggta gccggtctcg agggcccggg
      361 cgacggcgcg cgccgcctcc tcgcccttca tcggccaggt gccaaggccg atcgccggga
      421 tcgcggcgcc gttcgcgtgg accaggggcg tgagcatggc gtctctctga aggacgggag
      481 cgaggcagct gccgattact tgcggttccg cagggtctcg gcctcggcgt agaagcgctg
      541 ctcccaggcc ttgtgattgt cgagcccctc gcggatgaac ggcgtgaaca cggcgaggtt
      601 catgagtgcc cagttggcga agttcgcggg aaagcgcgtc ggcttcacga agtcgacgaa
      661 cagcaccacg cgcgtccggt cgctgtggtt ccaggcctcg tgctcgtagg cgtcgtcgaa
      721 gacgagggcc ttgccttcct gccaggtgca gacccggtca tgcacgcgga tcgcgagctt
      781 gtcgggtccg acgtcaggca caatgaggcc gaggtggagg cgcagcacgc cgttgtatgg
      841 gccgcggtgg gcaggcaggt gcttgccagg ctcgaagatc gagaacatcg ccgtcttgag
      901 cccggggatg gtctggacga tgcgccatgt ttcggggcac tgcgcgatgt tgcgctcgga
      961 cgacaggccg aagcccgcga ggaaaaacgt cttccagtgg gcgtccttgg taatgctcgc
     1021 gacgtccgtc gagattgact gaaacgtcgg caactcgtcc tggcgctcga gcacgcgctc
     1081 gagctccgcc cggatcttgt cccactcgcg ctcgatgccg gcgacccaag ggaagacggt
     1141 gttgtcatag accggcgggt tcccgagctt cgcgtacttg aggttcagcc gctccgcgaa
     1201 ggcgacgacc cgcatgaaga agagcgtgac gagacccggg cgcaccatgg tctgctcaag
     1261 gccttccgtg gcgaaggcct gggtcggttc agaactggta gtctctgcca tcggatgtgc
     1321 gtcgatcccg caacgaggcc gcctcatatc ggccctcggc tgccgccgcg caacgcccgt
     1381 gccgcatggc agaagtgctt cgtaccagcc cttaggttag cggcaggatt agcaccctct
     1441 cggcagcggg gcgcgagagg aggtcggcga cgtagcgctc cacgttcggg cggggctggc
     1501 ggtcaatcgg caggttgagc cagcggaacg ccgccgcgcc ggccgggatg tcgcccatcg
     1561 tgaaggtctc gcccgtgacg tagcggcgat ccgcgagctg cgcatcgagg atggccgcgt
     1621 aggcttcgct ttgcgcaatc gcggcgtcga tctcctcccg cgagcggctt cccggcgtgc
     1681 gcacgaggcc gtggaagatc gggccgaaag cgggcgtgaa ggcggtcgcc tgccagtcca
     1741 tccagcggtc cgcctcggcc cgggccctcg gatcggtcgc ccacagagtg cccgccgagt
     1801 gcttcgcgca caggtagcgc acgatggcat tcgactccca gaggacgaag ccgtcgtcct
     1861 cgagcgtcgg caccagacgg ttcggattgc ggcggccgta ctccgccgtg tccgtgacgc
     1921 cgtaaccccg cccggcgtcg atgcgctcgt atgcgagacc gagctcctcg aggcaccaca
     1981 gcgccttctg cacgttgatc gaattcttgc ggccccatag ggtgatcatg gcaatccttt
     2041 gcgcgcgcag gatcgtgcgc gtcagctcgc gagcttgccc atctgggcag ttgggtcaat
     2101 cacagcctcg cgatcaagtc gtgtccccgc gcgatccggc gaacccgtcc ga
//
LOCUS       DASQWN010000581         3227 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_854478, whole genome shotgun sequence.
ACCESSION   DASQWN010000581 DASQWN010000000
VERSION     DASQWN010000581.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 3227)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3227)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3227
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_854478"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(417..971)
                     /locus_tag="VE686_10865"
     CDS             complement(417..971)
                     /locus_tag="VE686_10865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018457301.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0042597 - periplasmic space [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Spy/CpxP family protein refolding chaperone"
                     /protein_id="HYY84983.1"
                     /translation="MTRRRDTTAAVLLGLALAAAADLALAQDHQARSPYAGMQAREVK
                     ALDAKTVEDLRAGRGMGLALAAELNGYPGPMHVLELADRLRLSPDQRAKVQQLFERMK
                     AEAVPLGQRLLDEERSLDRHFAERTITADLLASLTRSIGETTGALRQAHLSYHLATLE
                     ALTPEQVRQYAVARGYGAQHRHRH"
     gene            complement(986..1834)
                     /locus_tag="VE686_10870"
     CDS             complement(986..1834)
                     /locus_tag="VE686_10870"
                     /inference="COORDINATES: protein motif:HMM:NF017262.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CopD family protein"
                     /protein_id="HYY84984.1"
                     /translation="MAFEQVVVARSVFLATTFVLFGAALFPHYSRVAAQQPILPRPGR
                     VILASVALIAALVWFAAIVDAAAQEGEGSLETAHAVLFETSFGPVWLTRLGALALLVV
                     ASFVRRDVPVLALSAAAVACEGWTGHAAAWGALASLNQALHALAGAAWIGALVALMLL
                     LRRASRQPEHAAGACRALSSFSGAGVALVVVIAATGAVNTWMVLKGLPDPSRLYDRVL
                     LAKVGLFLAMIVVAATNRFVLVPAMQTSGRLRAPTLAVAVEQVLGVLVLVDVGALGLL
                     SPASGR"
     gene            complement(1840..2184)
                     /gene="copC"
                     /locus_tag="VE686_10875"
     CDS             complement(1840..2184)
                     /gene="copC"
                     /locus_tag="VE686_10875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015932967.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0042597 - periplasmic space [Evidence
                     IEA];
                     GO_function: GO:0005507 - copper ion binding [Evidence
                     IEA];
                     GO_process: GO:0006825 - copper ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="copper homeostasis periplasmic binding protein
                     CopC"
                     /protein_id="HYY84985.1"
                     /translation="MRALVAALSLGWTAGSALAHPELVEATPRDGSVVAAPPEVRLTF
                     TERIEPRLSGAEITDASGKRANAARLRVEGAQAIVALREPLPPGRYRVNWHVIGADAH
                     RVQGTVTFEVKP"
     gene            complement(2181..2828)
                     /locus_tag="VE686_10880"
     CDS             complement(2181..2828)
                     /locus_tag="VE686_10880"
                     /inference="COORDINATES: protein motif:HMM:NF015658.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF305 domain-containing protein"
                     /protein_id="HYY84986.1"
                     /translation="MLPNADGAAFARPFHRRPLASTLVAAILLIAAGAATPGMAQHQG
                     HRGHEGHVGSQPQRAKATKPSAKQHSGHAHAGHGARNRAGPQAPAVREFEAAHDTMMR
                     NMAVPYTGDPDADFRIQMIPHHQGAIDMAQVAMRHAKDPWTRQLAEGVIVEQQREIAE
                     MQAWLQRRGFASPPTRHPTHTIRANSFRTAPEEPGTRAELRGQSWAPGAGIPAAR"
     gene            complement(2914..>3227)
                     /locus_tag="VE686_10885"
     CDS             complement(2914..>3227)
                     /locus_tag="VE686_10885"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY84987.1"
                     /translation="VVGLALGQAGARLHAAPFVPPAHDHAASQHVGHHAHEHPAPGRH
                     DHSDRACITACCIVPSSWTQPAAASACVHFGSAVVYGEPTQPGSGRSEAPEPGIPKHR
                     A"
BASE COUNT          480 a         1122 c         1175 g          450 t
ORIGIN      
        1 gcgggccggc atgcgggcgc gcgggagcgc gcgccgcgga gcaccggctc ggcttgagat
       61 tcgtggtgtg gtggaacggc ccgggcgtct tggcgccggg cggcgtcttc aaggcgcgcg
      121 ggcgggcgcc gggggaccga cggacgggat catgaggcac tccaagcggc gaggttcaag
      181 gccaggcgat tgggcggcgc agtcgcgcgc cgctgcgccg gactatcgct gaaaatctcg
      241 cccgtacaag gccttacgcc aacatcggaa agcttctaaa acagccgcga agccgttgcg
      301 ccaagcaccg aaatcgccac cttcgaacgc gtccaaggta ctttttccgc cgtgcaagcg
      361 ccccgaacgg cagcgcgcgc tcgcgcagcg tctccgagtt cgagccgtcg tctcggtcaa
      421 tgcctgtgtc ggtgctgcgc gccgtagccg cgcgcgacgg cgtattgccg aacctgctcg
      481 ggcgtgagcg cttcgagcgt cgccaggtga tagctcaggt gcgcttgcct cagcgccccc
      541 gtggtctcgc cgatcgagcg cgtcagcgac gcgaggaggt ctgcggtgat cgtgcgctcg
      601 gcgaagtgcc ggtcgagcga cctctcttcg tcgagcagtc tctgcccgag ggggaccgcc
      661 tccgccttca tgcgctcgaa gagctgttgc actttcgccc gctgatcggg cgagagccgc
      721 aggcgatcgg cgagctccag cacgtgcatc gggccgggat agccgttgag ctcggcggcg
      781 agcgccagcc ccatgccgcg cccggcccgg agatcctcga ccgtcttggc atcgagcgcc
      841 ttgacctcgc gcgcctgcat gccggcgtag ggcgagcggg cctggtggtc ctgcgcaaga
      901 gcaaggtccg ctgcggcggc cagtgcaagt ccaagcaaca ccgccgccgt cgtgtctcgt
      961 ctgcgagtca tggctggtcc tccagttagc gccccgatgc gggactgagc agcccaagcg
     1021 cgccgacgtc gaccaagacc agcacgccca gaacctgctc cacggcgaca gcgagcgtcg
     1081 gtgcgcgcag cctaccgctg gtctgcatgg ctggcacgag cacgaagcgg ttcgtggcgg
     1141 cgaccacgat catggcgagg aacaggccga ccttggcgag gaggacgcgg tcgtagaggc
     1201 ggcttggatc gggcagcccc ttcaggacca tccaggtgtt caccgcgcct gtcgcagcga
     1261 tgaccaccac aagggcgacc cccgccccgg agaaggacga gagcgcccgg caggcgcctg
     1321 cggcatgctc gggctgccgt gaggcccgcc gcagcaggag catcagggcg acgagtgcgc
     1381 cgatccaggc cgctccggcc agcgcatgga gcgcctggtt gagggatgcg agcgcgcccc
     1441 atgccgcggc gtggccggtc cagccttcgc aggccacggc cgccgccgag agcgccagga
     1501 cgggcacgtc ccgccggacg aagctcgcga cgacgagcaa cgcgagggcc ccgagccggg
     1561 tcagccaaac cgggccgaag ctcgtctcga acaggaccgc gtgagccgtc tcgagagagc
     1621 cttcgccctc ctgcgcggcg gcatcgacga ttgccgcgaa ccacacgagc gccgcgatca
     1681 gcgcgacgga cgccaggatc acccgtccgg gtcgcggcag gatcggctgc tgcgccgcga
     1741 cgcgggaata atgcggaaac agcgccgcgc cgaacaggac gaacgtcgtg gcgaggaaga
     1801 cgctcctcgc cacgacgact tgctcgaacg ccatcgcgct cagggcttca cctcgaaggt
     1861 gaccgtgccc tgcacacgat gcgcgtcggc accgatgaca tgccagttca cccggtagcg
     1921 acccggcggc agcggctcgc gcagggcgac gatcgcctgg gctccctcga ccctcagtcg
     1981 ggcggcattc gcccgcttgc cgctcgcatc ggtgatctcc gcgcccgaga ggcgcggttc
     2041 gatgcgctcg gtgaaggtga ggcgaacctc gggcggcgcc gcgacgacgc tgccgtcacg
     2101 cggcgtcgcc tcgacgagct ccgggtgggc gagggccgag cccgccgtcc agccgaggct
     2161 caaggccgcg acgagggctc tcatcgcgca gcgggaatgc ccgcccccgg cgcccacgac
     2221 tgcccgcgca gctcggcccg ggttccgggc tcctccggag ccgtccggaa cgagttcgcc
     2281 cggatcgtat gcgtcgggtg ccgggtcgga ggcgacgcga agccgcgacg ctggagccag
     2341 gcctgcatct cggcgatctc ccgctgctgc tcgacgatga cgccctcggc gagctgccgc
     2401 gtccacgggt ccttggcgtg gcgcatggca acctgcgcca tgtcgatggc cccctggtgg
     2461 tgcgggatca tctggatgcg gaaatcggcg tccgggtcgc ccgtgtaggg cacggccatg
     2521 ttgcgcatca tggtgtcgtg agccgcctcg aattcgcgaa cggccggggc ttggggcccg
     2581 gcacggttcc gcgctccatg gcccgcgtgc gcatggccgg agtgctgctt ggcgctgggc
     2641 ttcgtcgcct tcgcgcgttg cggctgcgac ccgacatggc cttcatggcc ccgatggccc
     2701 tggtgctggg ccatgcccgg cgttgcagcg cctgccgcga tgagcaggat cgccgcaacg
     2761 agcgtggacg cgagtggacg acggtgaaat gggcgcgcga aagcggcgcc gtctgcattg
     2821 ggaagcatgg gctccctcct gatacgggaa aaacattcat cctgccgccg ctcactggag
     2881 cggtggcgat cgacccgtcg aggcgggtgc aggtcatgcg cggtgcttgg ggattcctgg
     2941 ctcgggagcc tcgctgcgcc ccgacccggg ctgcgtcggc tcgccgtaga caacggccga
     3001 gccgaagtgg acgcaggcgg aggccgcggc cggctgcgtc cagctcgacg gaacgatgca
     3061 gcacgccgtg atgcacgccc ggtccgagtg gtcgtgccgg cccggcgcgg gatgctcgtg
     3121 cgcatggtgc ccgacgtgct ggctcgcggc atggtcgtgc gccggcggca cgaacggagc
     3181 cgcgtggagc cgcgcgccgg cctgacccaa cgccaagccg acgacgg
//
LOCUS       DASQWN010000582         2880 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_457274, whole genome shotgun sequence.
ACCESSION   DASQWN010000582 DASQWN010000000
VERSION     DASQWN010000582.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2880)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2880)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2880
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_457274"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            194..1003
                     /locus_tag="VE686_10890"
     CDS             194..1003
                     /locus_tag="VE686_10890"
                     /inference="COORDINATES: protein motif:HMM:NF012596.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-CoA hydratase/isomerase family protein"
                     /protein_id="HYY84988.1"
                     /translation="MSDAGMTVGHTGAVTVERRDAIAIVRFAGPSRANPLSAAVMRDL
                     VAAARLFEEDARTAVVVVAGRDAVFSAGLDLRDEATRRMTDGDLGERRVLAETGRRLL
                     DTFSGLAPVTVAAIEGPCLGGGLALAAALDFRVASRSAVFGAPEVAVGLNMAWGSLAQ
                     LAAVAGVQVTRRLVLAGDRLDTAQAHAAGLVDEVAPDGAALDHALAMAARLSAYPVAP
                     LRMAKRALAAIVQASGTGAALDTDQFVAATGSPTFKASLARFAETRLKQGD"
     gene            1008..2081
                     /locus_tag="VE686_10895"
     CDS             1008..2081
                     /locus_tag="VE686_10895"
                     /EC_number="1.13.12.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012044727.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_function: GO:0016703 - oxidoreductase activity, acting
                     on single donors with incorporation of molecular oxygen,
                     incorporation of one atom of oxygen (internal
                     monooxygenases or internal mixed function oxidases)
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nitronate monooxygenase"
                     /protein_id="HYY84989.1"
                     /translation="MWQDRRFLDLVGIEIPIVQAPMAGSVTSEMVIAVSEAGGLGSLP
                     CAMLNAEQIRTELGIIRQRTARPINVNFFCHAPPQRDARREAAWKERLTPYYAELGID
                     PDAQPSGPARAPFDDAMCDAVLEFRPEVVSFHFGLPDQRLLRRLKESGAKVLSSATSV
                     AEARALEAQGCDAVIAQGYEAGGHRGMFLTDDIASQAGTMALVPQVVDAVRVPVIAAG
                     GIADGRGIVAALALGASAVQIGTAYLFCPEAKVGAAHRAALNSANESATVLTNVFTGR
                     PARGIVNRIVREVGPMSQHAPAFPLAATGVGPLRSKGEAAGSGDFTPLWSGQAAALGR
                     ELPAGELTRTLASEAAERLAALR"
     gene            complement(2121..>2880)
                     /locus_tag="VE686_10900"
     CDS             complement(2121..>2880)
                     /locus_tag="VE686_10900"
                     /inference="COORDINATES: protein motif:HMM:NF012371.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="serine hydrolase"
                     /protein_id="HYY84990.1"
                     /translation="RSIDDPVRDYSLDDGFASPQNRDITWRHLLDQTSEWEGTLFDKP
                     DAVDRHRQVGPGTGAKPKGSHRDLQRPGTYWEYNDVRVNRLALSLLHVFRRPLPEVLR
                     EAIMDPIGASADWEWRGYRNSTVEIDGKPMESVSGGAHWGGGMFISARDHARLGYLIQ
                     RRGTWDGRQLLSESWIDALTTPCAINPIYGLLWWLNTDRAYYAAAPETSFFAVGMGTN
                     LIWIDPALDLLVVARWVNKERVGDLIASVMKAMR"
BASE COUNT          377 a         1023 c         1037 g          443 t
ORIGIN      
        1 tgatctcgtc gcgcaccatg gtgcggacct tgtcgacgag gggcttcacc cgctccgtca
       61 tgcccagatc catgtgaggc ctcccggttt tcgtgttcga ctgtctgccc tactttagcg
      121 cctcgcacgg cagtgtcatg ctcgtcgagt cgccctaaga ggcgcgacca ccattgggga
      181 ggcgacgatc gcgatgagcg acgcggggat gacggtcggg cacaccggcg cggtcacggt
      241 cgagcgccgg gacgccatcg ccatcgtccg ctttgccggg ccgagccgcg cgaatccctt
      301 gtcggccgcg gtcatgcgcg acctcgtcgc ggcggcccgg ctgttcgagg aggacgcccg
      361 gacggccgtg gtcgtcgtgg ccggccgcga cgcagtgttc agcgcgggcc tcgacctgcg
      421 cgacgaggcg acgcgccgaa tgaccgacgg cgatctcggg gagcgccgcg tccttgcgga
      481 gaccgggcga cggctcctcg acaccttctc ggggctggct ccggtcaccg tcgcggcaat
      541 cgagggtccg tgcctcggcg gcggcctggc gctcgccgcc gccctcgact tccgggtcgc
      601 ctcgcggagc gccgtcttcg gcgcgcccga ggtggcggtc ggcctcaaca tggcctgggg
      661 ctccctcgcg cagctcgccg ccgtcgccgg cgtgcaggtc acgcgccggc tggtgcttgc
      721 cggcgaccgg ctcgacactg cgcaagctca tgccgccggc ctcgttgacg aagtggcgcc
      781 ggacggcgcg gcgcttgatc acgcgctggc aatggcggcg cggctgtcgg cctatccggt
      841 cgcgccgctg aggatggcca agcgagcgct cgccgccatc gtgcaggcgt caggcacggg
      901 ggccgccctc gacacggacc agttcgtcgc cgcgacgggg tcgcccacgt tcaaggcgtc
      961 gctcgcccgc ttcgcggaaa cgcgcctcaa gcaaggggac taggaccatg tggcaggacc
     1021 gccgcttcct tgatctcgtc gggatcgaga tcccgatcgt gcaggctccc atggctgggt
     1081 cggtgacctc cgagatggtc attgcggtgt cggaagcggg agggctcggc tcgcttccgt
     1141 gcgccatgct caatgcggag cagatccgga ccgagctcgg tatcatccgc cagcgcaccg
     1201 cccggccgat caacgtcaac ttcttctgcc atgcgccgcc gcagcgggac gctcggcgtg
     1261 aagccgcgtg gaaggagcgc ctgacgccct actacgccga actcgggatc gacccggacg
     1321 cacagccctc cggccccgca cgcgccccgt tcgacgacgc catgtgcgat gcggtgctgg
     1381 agttccggcc ggaggtggtg agctttcact tcggcctgcc ggaccagcgg ctgctccggc
     1441 gcctcaagga gagcggcgcc aaggtgctct cctcggcaac ctcggtcgcc gaggcgcggg
     1501 ctctcgaggc gcaaggctgc gacgccgtca tcgcgcaggg gtacgaggcc ggcgggcacc
     1561 ggggcatgtt cctgaccgac gacatcgcct cgcaagccgg caccatggcg ctcgtgcccc
     1621 aggtcgtcga tgccgtccgc gtcccggtga tcgccgccgg cggcattgcc gacgggcgcg
     1681 gcatcgtcgc cgccctggcg ctcggggcct ctgcggtcca gatcggcacc gcgtacctgt
     1741 tctgccccga agcgaaggtc ggagcggcgc atcgcgcagc cctcaacagc gcgaacgagt
     1801 ccgccaccgt cctcaccaac gtcttcacgg gccgtccggc ccgcggcatc gtcaaccgca
     1861 tcgtgcgcga ggtcgggccg atgtcgcagc acgctcccgc gttcccgctc gccgcgaccg
     1921 gcgtcggccc gctccggtcg aagggcgagg ccgccggctc gggcgacttc accccgttgt
     1981 ggtcgggcca ggcggccgcc cttgggcgcg agcttccggc cggtgagctc acccgcacgc
     2041 tcgcgtccga ggcggcggag cgtctcgcgg ctctgcgatg accgggattc tcccctgccg
     2101 cgcgggggag atgcccgcga tcagcgcatc gccttcatca cgctcgcgat gaggtcccca
     2161 acccgctcct tgttgaccca ccgcgccacc acgaggaggt cgagagccgg gtcgatccag
     2221 atcaggttgg tgcccatgcc gacggcgaag aagctcgtct ccggggcagc ggcgtagtag
     2281 gcgcggtcgg tgttgagcca ccacaggagg ccgtagatcg ggttgatggc gcagggtgtc
     2341 gtcagggcgt cgatccagct ctccgacagg agctgccggc cgtcccaggt cccgcggcgt
     2401 tggatgaggt agccgagccg ggcgtggtcg cgggcggaga tgaacatgcc gccgccccag
     2461 tgggcgccgc ccgagaccga ctccatgggc ttgccgtcga tctcgacggt ggagttgcgg
     2521 tagccgcgcc actcccagtc ggccgaggca ccaatcgggt ccatgatggc ctcgcgcagc
     2581 acctccggaa gcgggcggcg gaagacatgc agcagcgaca gggcgagccg gttcacccgg
     2641 acgtcgttgt actcccagta cgtcccgggc cgctgcaggt cgcggtgcga gcccttgggc
     2701 ttggcgccgg tgccggggcc gacctggcgg tgccggtcga cggcgtcggg cttgtcgaac
     2761 agcgttccct cccactcgct cgtctggtcg agcaggtggc gccaggtgat gtcgcggttc
     2821 tggggcgagg cgaagccgtc gtcgagcgag tagtcccgta cggggtcgtc gatggagcgg
//
LOCUS       DASQWN010000583         2404 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_854968, whole genome shotgun sequence.
ACCESSION   DASQWN010000583 DASQWN010000000
VERSION     DASQWN010000583.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2404)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2404)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2404
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_854968"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..692)
                     /locus_tag="VE686_10905"
     CDS             complement(<1..692)
                     /locus_tag="VE686_10905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019404103.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NTP transferase domain-containing protein"
                     /protein_id="HYY84991.1"
                     /translation="MTRAAPTPSAEPRSCLAVVLAAGEGTRMRSALPKVLHRIAGRSM
                     LAHVLAGVAAAGASRLAVVVGPDRDDVAREAMAAAPEGSVFVQRQRLGTAHAVLAARE
                     ALAQGADDVIVAYADTPLIAPTTLAALRAPLADGAAVAVLGFEPADPTGYGRLIVQGG
                     ALTAIREEKDASPAERAIGFVNGGLMALRGDVALAILERIGNRNARAEYYLTDAVEVA
                     AAMGERALAVAVP"
     gene            866..>2404
                     /locus_tag="VE686_10910"
     CDS             866..>2404
                     /locus_tag="VE686_10910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012335204.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucan biosynthesis protein D"
                     /protein_id="HYY84992.1"
                     /translation="MPATPGHSPLSPRRREVLKLIGASLAGATLAPAAAQAQNPSALA
                     VIQNALGDGQRFDPAIVADLARQIARRPYAAPPADLPEPFANLPFDQYSAIKAQPSSF
                     LWAGENRGIVVEPLHRGSFFTNAVALFAVEDGQVRRLVYDKARFSFGKLNVPPSVGDI
                     GFSGVRLYSASNGHLADFASIQGATFFRARARGQDYGAVARALTLRPAEARGEEFPIF
                     RAMWLERPAPGATALVLHAIFESESVAGALRMTWRPGDMVIVDVEQSLFPRVDLDHVG
                     IGGMGASYLYGPNDRRTADDIRPAVYEASGMQMLNGQGEWLWRPLHNPERLQVSAFID
                     RNPKGFGLVQRDREFTAFQDDVERWERRPTLWVEPLGEWGDGVVQLIEIPSDAEMNDN
                     ILAYWRPKGPLPAGGEVALAFRQFWCWTMPERPPLAAVTATRVGKGSAGRRRRFSIDF
                     AGEIPDAAAADLRPALTTAPGTIHAPRLWRYPERKTTRVTFELDPGSENACEMRLVLE
                     AGGKP"
BASE COUNT          349 a          907 c          811 g          337 t
ORIGIN      
        1 gggaccgcga ccgccagggc gcgctcgccc atggccgcgg caacctcgac ggcatcggtg
       61 aggtagtact ccgccctggc gttgcggttg ccgatccgct ccaggatcgc aagcgcgaca
      121 tcgccgcgca gcgccatgag cccgccgttg acgaagccga tcgcccgctc ggccggcgag
      181 gcgtccttct cctcgcggat cgccgtgagc gcgccgccct gcacgatcag ccgcccatag
      241 cccgtcggat cggccggctc gaacccgagc accgcgacag ccgcgccgtc cgccagtggg
      301 gcccggagtg ccgcaagcgt cgtcggcgcg atgagcgggg tgtcggcata ggcgacgatc
      361 acgtcgtccg ccccttgcgc aagcgcctcc cgggccgcaa gcacggcgtg cgcggtcccg
      421 agccgctggc gctgcacgaa gaccgagccc tccggcgccg ccgccatggc ttcgcgcgcc
      481 acatcgtccc ggtccggccc gacgacgacg gcgagccgtg acgcccccgc tgcggcaacc
      541 ccggcgagga cgtgcgcgag catcgatcgc cccgctatgc ggtgcagcac cttgggaagc
      601 gccgagcgca tgcgggtccc ctcccccgca gcgaggacga cggcaaggca gctcctcggc
      661 tcggcggagg gggtcggggc ggcgcgcgtc atgggcttcc ggtgctctgc gattctcgcg
      721 cagctaccat atcgccccgt ggtccggaaa tcgccgagcg gcggcagcgc aaaaccgctc
      781 cgcgcgccgc aaaagacgtg gtagagagcg cgccggccgc ctggacgggc gaagacctgc
      841 aatcggacga tctaaagtgt gcgtcgtgcc cgccaccccg ggacattccc ccctgtcgcc
      901 gcggcgccgc gaggtgctca agctcatcgg agcgtccctc gcgggagcga ccctggcgcc
      961 cgccgcggcc caggcccaga acccgtcggc cctggcagtc atccagaacg cgctcgggga
     1021 cgggcagcgc ttcgatcccg ccatcgtggc ggacctcgcc cgccagatcg cccgccggcc
     1081 gtatgcggcc cctcctgccg acctgccgga gcccttcgcg aacctcccct tcgaccagta
     1141 cagcgccatc aaggcccagc cctcgagctt cctctgggcc ggcgagaacc gcggtatcgt
     1201 ggtcgagccg ctgcaccgcg gctcattctt caccaacgcc gttgcgctct tcgcggtcga
     1261 ggatggccag gttcgccgcc tcgtctacga caaggcccgg ttctcgttcg gcaagctcaa
     1321 cgtgccgcca agcgtcggcg atatcggctt ctcgggcgtg cgcctgtatt cggcgtccaa
     1381 cggccacctc gccgactttg cgtcgatcca gggagcgacg ttcttccggg cccgggcacg
     1441 cggccaggac tacggcgccg tggcgcgggc gctcacactc cgccctgccg aagcgcgcgg
     1501 cgaggagttt ccgatatttc gggccatgtg gctcgagcgg ccggcacccg gtgcgaccgc
     1561 gctggtcttg cacgcgatct tcgagtccga atccgtagcc ggcgcgcttc gcatgacctg
     1621 gcggcccggc gacatggtca tcgtcgatgt cgagcagagc ctgttccccc gtgtcgacct
     1681 cgaccacgtc ggcatcggcg gcatgggcgc gagctacctc tacggaccga acgaccgccg
     1741 caccgccgac gacatccgcc cggccgtcta tgaggcttcc ggcatgcaga tgctcaacgg
     1801 ccagggcgag tggctgtggc gcccgctgca caatccggag cggctgcagg tgtcggcctt
     1861 catcgacagg aaccccaagg gcttcggcct cgtgcagcgc gaccgcgagt tcaccgcgtt
     1921 ccaggacgac gtcgagcgct gggagcggcg cccgacgtta tgggtcgagc ccctcggcga
     1981 gtggggcgac ggcgtcgtgc agctcatcga aatcccgagc gacgccgaga tgaatgacaa
     2041 catcctcgcc tattggcgcc caaaggggcc cctgccggcc gggggcgagg tggcgctcgc
     2101 gttccgccag ttctggtgct ggaccatgcc ggagcgccct ccccttgccg cggtcacggc
     2161 cacgcgggtc ggcaaaggtt cggcgggccg gcgccgccgc ttcagcatcg acttcgcggg
     2221 cgagatcccg gacgcggccg cggccgacct caggccggcg ctcacaaccg ctccaggcac
     2281 catccatgcg ccgaggctct ggcgctaccc ggagcgcaag accacccgcg tgaccttcga
     2341 gcttgaccct ggcagcgaaa acgcgtgtga gatgcgcctc gtcctcgaag cgggcggaaa
     2401 accc
//
LOCUS       DASQWN010000584         5507 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_352002, whole genome shotgun sequence.
ACCESSION   DASQWN010000584 DASQWN010000000
VERSION     DASQWN010000584.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 5507)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5507)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5507
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_352002"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1124
                     /gene="trmFO"
                     /locus_tag="VE686_10915"
     CDS             <1..1124
                     /gene="trmFO"
                     /locus_tag="VE686_10915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012332354.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA];
                     GO_process: GO:0008033 - tRNA processing [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="methylenetetrahydrofolate--tRNA-(uracil(54)-
                     C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO"
                     /protein_id="HYY84993.1"
                     /translation="DRDGFSDAVTAALEAHPLVTIERGEVAGLPPDEWSSAIVATGPL
                     TSPALAEAILSVTGEKELAFFDAIAPIVYRDSIDMSVAWFQSRYDKAGPGGTGADYIN
                     CPLDKEGYEAFIDALIAGDKTSFKEWEASTPYFDGCLPIEVMAERGRETLRHGPMKPV
                     GLTNRHAPDVKPYAVVQLRQDNALGTLFNMVGFQTKLKHGEQARVFRMIPGLEKAEFA
                     RLGGLHRNTYINSPRLLDPTLRLNAMPRIRFAGQITGCEGYVESAAVGLMAGRFAAAE
                     RLGRPILPLPSTTALGALINHITGGHIETIDEGPRSFQPMNVNFGLFPPLERAPKAED
                     GKRLRGPAKALARKQALTNRARADLSAWLAAGEMPQAAE"
     gene            1287..1745
                     /locus_tag="VE686_10920"
     CDS             1287..1745
                     /locus_tag="VE686_10920"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY84994.1"
                     /translation="MKKIALALAGMLALGTGIATAPSPAAANWGYGYRHHHARFYGPP
                     VRRVVVHRPAFARPVIYRSAYYHPRPAFVRKVVYRDVYRPRPVVTRVVYRPATRIVYR
                     RPVVRHVVHAGFYQPRPLVTRVVYRDGFRRAHWGGHWGGGWGHRWGGHWR"
     gene            complement(1800..2675)
                     /locus_tag="VE686_10925"
     CDS             complement(1800..2675)
                     /locus_tag="VE686_10925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019903886.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phytoene/squalene synthase family protein"
                     /protein_id="HYY84995.1"
                     /translation="MTAAQDSSSAAAHCEALVRAGDPDRYFATLFAPADKRPHLFALY
                     AFSLEVARVREAVSEALTGEIRLQWWRDTLQGEARGDVRANPVAAALDAAIVTFRLPR
                     QALVDLIDARVFDLYDDLMPTLTDLEGYCGETSSALIRLASLILADGDDPGAADAAGH
                     AGVAYAITGLLRAFPWHARQGRLYVPAAVLDAHAVTREEILAGRGGEGLARALSDMRG
                     VARRHLDAAHRHTTNLPPRIAPAFLPAALVPPYLQAMERPGYEPFTTVVDVPQWRKLW
                     TLWWAARRRRPWPSA"
     gene            2780..3193
                     /locus_tag="VE686_10930"
     CDS             2780..3193
                     /locus_tag="VE686_10930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011088906.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3830 family protein"
                     /protein_id="HYY84996.1"
                     /translation="MDHLKITAGDVSFVARLETAAAPKTCAAFVRSLPFVSEIVHVRW
                     SGEAVWMPLGDLDFGVGYENATSFPAPGQLILYPGGVSETEILLAYGPVCFASKAGQL
                     AGNHFLTIVEGLEKVHPLGRAVLYKGAHPIRFDPV"
     gene            complement(3200..3934)
                     /locus_tag="VE686_10935"
     CDS             complement(3200..3934)
                     /locus_tag="VE686_10935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015932340.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate/glutamate racemase family protein"
                     /protein_id="HYY84997.1"
                     /translation="MKLLLINANTTVGVTDRLVEHARTLAGPEVEVVGATGRFGARYI
                     SSRAAVAVAAHAAVDALAEHGEDADAVCLACFGDPGLTALKELSPVPVIGMAEASCHA
                     AAMMGRRFSIVTGGALWGPMLEDFVASLGMSERLASVATIALTGDQIARDPEGSLPTL
                     AQACAACVRDDGADVVILGGAALVGLAERLADRVPVPLICSATTSVAMTLAVARAKPA
                     RTSSAASPVESVGLSPALARALARRA"
     gene            4126..>5507
                     /locus_tag="VE686_10940"
     CDS             4126..>5507
                     /locus_tag="VE686_10940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014439491.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HYY84998.1"
                     /translation="MTSRSLTALCFGLALGTSLTTAALAQEKTLRVGMTAADIPRTLG
                     QPDQGFEGNRFTGIPIYDSLTQWDLSKEKEPSILIPGVATEWKVSDADKTKWVFKLRP
                     GVKFHDGSDFNADAVVWNVQKVLDKSAPHFDPSQVGVTASRMPTLRSARKIDDSTVEL
                     TTSEPDSFLPINLTNLFMASPAHWNAKLQAVPASVTDAAERAKQAWAAFAADPSGSGP
                     FRVTRFVTRERLELAKNANYWDEKRRPKVDRVVLLPLPEANARTAALLGGQVDWIEAP
                     SPDAIAQIKSRGFTIYQNAQPHVWPWQLSFVEGSPWLDKRVRHAANLCVNRGELKELL
                     AGQMAEPKGTVGPTHPWWGNPKFDIKYDPAAAKKLMQEAGFSASKPLKVKVQTSASGS
                     GQMQPIPMNEFVQQNLKDCFFDVELDVIEWNTLFTNWRHGAKDQSARGSNAINVSFAA
                     MDPFFDMVRFT"
BASE COUNT          889 a         1956 c         1853 g          809 t
ORIGIN      
        1 tcgaccgcga cggcttctcg gacgccgtga cggccgccct cgaggcgcac ccgctcgtca
       61 ccatcgagcg cggcgaggtc gccggcctgc cgccggatga gtggtcctcg gcgatcgtcg
      121 ccaccgggcc cctcacctcc ccggcccttg ccgaggcaat ccttagcgtc acgggcgaga
      181 aggagctcgc cttcttcgac gccatcgcgc ctatcgtcta ccgcgactcg atcgacatga
      241 gcgtcgcctg gttccagtcg cgctacgaca aggcgggccc tggcggcacc ggcgccgact
      301 acatcaactg cccgctcgac aaggagggct acgaagcctt catcgacgcg ctcatcgccg
      361 gcgacaagac gagcttcaag gagtgggaag cctcgacgcc gtacttcgac ggctgcctcc
      421 ccatcgaggt catggcggag cgcggccgcg agaccctgcg acacggaccg atgaagcccg
      481 tcgggctcac caaccggcat gcgcccgacg tgaagcccta cgcggtggtg cagctgcgcc
      541 aggacaacgc gctcggcacc ctgttcaaca tggtcggctt ccagaccaag ctgaagcacg
      601 gcgagcaggc ccgcgtgttc cgcatgatcc cgggcctcga gaaggccgag ttcgcgcgcc
      661 tcggcggcct gcatcgcaac acctacatca actcgccgcg cctcctcgac ccgaccctgc
      721 ggctcaacgc catgccgcgc atccgcttcg cgggccagat caccggctgc gagggctacg
      781 tcgagagcgc cgctgttggc ctcatggccg gccgcttcgc cgccgcggag cgcctcgggc
      841 ggccgatcct gccgcttccg agcacgacgg cacttggcgc gctgatcaac cacatcacag
      901 gcggccacat cgaaaccatc gacgaggggc cgcgctcgtt ccagcccatg aacgtcaact
      961 tcggcctgtt cccgcccctc gagcgcgcgc ccaaggccga ggacggcaag cgtctgcgcg
     1021 gccccgccaa ggccctcgcg aggaagcagg cactgacgaa ccgcgcccgc gccgacctct
     1081 cggcctggct cgccgccggc gagatgccgc aggcggcgga gtagcgggat tcgtacagca
     1141 acgccgtcta agtaagcttt gcctttacaa caaacacacg ggcgcggccg cgcttgccag
     1201 catttaattt cagtaatgct gcacccggcg cgacggcccc gagttgttcc ggcaagcagg
     1261 gggccctgct cgtctggaga acgaccatga agaagattgc gcttgccctg gcgggcatgc
     1321 tggctctcgg caccgggatt gcgaccgcgc cgagccccgc cgccgccaat tggggttacg
     1381 gctaccgtca ccaccatgcc cggttttacg gcccacccgt gcgccgcgtc gtggtgcatc
     1441 gcccggcgtt tgcccggccg gtgatttacc gcagtgccta ttaccacccg cgcccggcgt
     1501 tcgtgcgcaa ggtggtgtac cgcgacgtct accggccgcg accggtggtg acgcgggtcg
     1561 tgtaccgccc cgccacgcgg atcgtgtacc gccgtcctgt cgtgcgtcac gtggtgcacg
     1621 ccggcttcta ccagccgcgc ccgctcgtca cccgcgtcgt gtaccgcgac ggcttccgcc
     1681 gcgcgcactg gggcggccat tggggcggcg gctggggcca ccgctggggc ggtcactggc
     1741 gctgacgcca gcccgcatcc aagcttgcga ggcgcgagcc gggaaaccgg ctcgcgtttt
     1801 catgctgacg gccacggccg ccggcgccgc gccgcccacc acagggtcca cagcttgcgc
     1861 cactgcggca cgtcgacgac ggtcgtgaac ggctcgtagc cggggcgctc catggcctgc
     1921 agatatgggg gcacgagcgc ggcgggcagg aacgccgggg cgatcctcgg cggcaggttc
     1981 gtcgtgtgcc tgtgggcggc atcgagatgc cgtcgcgcga ccccgcgcat gtcggagagg
     2041 gcgcgcgcaa gcccttcgcc gcctcgcccc gcaaggatct cctcgcgtgt gacagcatgc
     2101 gcatcgagca ccgcagcggg aacgtacagg cggccttggc gggcgtgcca cgggaacgcc
     2161 cgcaacaggc ccgtgatggc gtaggcgaca ccggcatggc cggcggcgtc cgcggctccg
     2221 ggatcgtccc cgtcggcaag gatgaggctc gcgagcctga tcagggccga cgaggtctcg
     2281 ccgcaatagc cctcgaggtc ggtgagcgtc ggcatgaggt catcgtagag gtcgaacacg
     2341 cgtgcatcga taagatccac gagcgcctgc cgcggaagcc tgaaggtcac gatggcggcg
     2401 tcgagggcgg cggcgacggg gttcgcccgg acgtcgccgc gagcctcgcc ctgcagggta
     2461 tcgcgccacc actgcagccg gatctcgccc gtcagcgcct cgcttacggc ttcgcgcaca
     2521 cgggccacct cgaggctgaa ggcgtagagc gcgaacaggt gtggccgctt gtcggccggc
     2581 gcgaacaggg tcgcgaagta gcggtctgga tcgccggccc gcacgagggc ttcgcagtga
     2641 gcagcggccg atgaggagtc ctgcgcggcg gtcatcgccg ctccgtatag ggccgcgtcg
     2701 cgcggcgcgc gaggccggcc cggttggttt ccgcccggcg atgcagtaag gccgaccgca
     2761 gacgttcggg gatgttgcaa tggaccatct gaagatcacg gccggcgatg tgtcattcgt
     2821 cgcgcgcctc gagaccgcgg ccgcccctaa gacctgcgcg gcgttcgtgc gctcgcttcc
     2881 gttcgtgagc gagatcgtgc acgtgcgctg gagcggcgag gccgtgtgga tgccgcttgg
     2941 cgacctcgac ttcggcgtcg gctacgagaa cgccacgagc ttccccgccc ccgggcagct
     3001 gatcctctac ccgggcggcg tgagcgagac cgaaatcctc ctcgcctacg gcccggtgtg
     3061 cttcgccagc aaggcgggcc agctcgccgg caaccacttc ctcaccattg tcgaggggct
     3121 cgagaaggtg catccgctcg gccgcgccgt cctctacaag ggcgcgcatc cgatccgctt
     3181 cgacccggtc taaccgggct caagctcggc gcgcgagagc gcgcgcgagc gccggcgaca
     3241 ggccgacgga ctcgaccggc gaggccgctg agcttgtcct cgccggctta gcgcgcgcga
     3301 ccgccagcgt catcgcgacg gacgtcgtgg cggagcagat gagcggcacc ggcacgcggt
     3361 cggcgagccg ctcggccagg ccgacgagcg ccgcaccgcc gaggatcacc acgtcggcgc
     3421 cgtcgtcgcg gacgcaagcc gcgcaggctt gcgcgagcgt cggcaggctg ccttcgggat
     3481 ccctcgcgat ctggtcgccc gtaagcgcga tggtggcgac gctcgccagc cgctcggaca
     3541 tcccgagcga ggcgacgaag tcctcgagca tgggtcccca cagcgcgcct ccagtcacga
     3601 tcgaaaagcg acgccccatc atcgcggcgg catggcacga ggcctcggcc atgccgatca
     3661 ccgggacggg cgaaagctcc ttgagcgcgg tgaggccggg atcgccgaag caggcgaggc
     3721 agacggcgtc ggcgtcctcg ccatgctcgg ccagggcatc gacagccgca tgcgccgcga
     3781 ccgcaacggc ggcgcggctc gagatgtagc gcgcgccgaa gcgtccggtg gcgccgacga
     3841 cctcgacctc agggcccgca agcgtccgcg catgctcgac gagcctgtcg gtgacgccca
     3901 cggttgtgtt ggcattgatg agcagcagct tcacgaccgg cgtctccatg gaacatgccg
     3961 attggcggcc attccgattg cttctttgcg cgcagtttgc ctattttctc tccagcggtc
     4021 tcgctacgcg ccgggaaggt cggtgacctc ttgagcttgg cacgtaggtt gctgcccacg
     4081 aaacaagaac ggacgaccat atgggtcgcc gacggggaga cacggatgac atcgcgatca
     4141 ctgacggcgc tctgcttcgg tctggcgctc ggaacgagcc tcacgaccgc cgcgcttgcg
     4201 caggagaaga ccttgcgcgt cggcatgacg gccgccgaca tcccgcgcac gctcggccag
     4261 ccggaccagg gcttcgaagg caaccgcttc actggcatcc cgatctatga ttcgcttacc
     4321 caatgggacc tgtcgaagga gaaggagccc tccatcctga tcccgggcgt cgcgaccgaa
     4381 tggaaggtct cggacgccga caagacgaag tgggtgttca agctgcggcc gggcgtgaaa
     4441 ttccacgacg ggtcggactt caacgccgac gcggtcgtct ggaacgtgca gaaggtcctc
     4501 gacaagtcgg cgccgcactt cgacccgagc caggtcggcg tcaccgcctc gcgcatgccg
     4561 acgctgcgct cggcgcgcaa gatcgacgac tcgacggttg agctgacgac ctcggagccg
     4621 gactcgttcc tgcccatcaa cctcacgaac ctgttcatgg cgtcgccggc acactggaac
     4681 gccaagctcc aggccgttcc tgcctccgtg accgacgctg ccgagcgggc caagcaggcg
     4741 tgggccgcct ttgcggccga tccgtcgggc agcggcccgt tccgggtgac gcgcttcgtc
     4801 acgcgcgagc ggctcgagct tgccaagaac gcgaactact gggacgagaa gcgccggccc
     4861 aaggtcgatc gcgtcgtgct cctgccccta ccggaagcga acgcgcgcac ggcggcgctt
     4921 ctcggcggcc aggtcgactg gatcgaggcg ccctcccccg acgccatcgc gcagatcaag
     4981 agccgcggct tcaccatcta ccagaacgcg cagccgcacg tgtggccgtg gcagctgtcc
     5041 ttcgtcgaag gatcgccgtg gctcgacaag cgcgtccggc acgccgcgaa cctgtgcgtg
     5101 aaccgcggcg agctgaagga gctcctcgcc ggccagatgg cagagccgaa gggcaccgtc
     5161 ggcccgaccc atccgtggtg gggcaacccg aagttcgaca tcaaatacga tcccgcggca
     5221 gcgaagaagc tcatgcagga ggcgggcttc tcggcctcga agccgctcaa ggtgaaggtg
     5281 cagacctccg cctcgggctc gggccagatg cagccgatcc cgatgaacga gttcgtgcag
     5341 cagaacctca aggactgctt cttcgacgtc gagctcgacg tcatcgagtg gaacacgctg
     5401 ttcacgaact ggcgccacgg cgcgaaggac cagagcgcgc gcggctcgaa cgccatcaac
     5461 gtctcattcg cggccatgga cccgttcttc gacatggtgc ggttcac
//
LOCUS       DASQWN010000585         3945 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_458008, whole genome shotgun sequence.
ACCESSION   DASQWN010000585 DASQWN010000000
VERSION     DASQWN010000585.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 3945)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3945)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3945
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_458008"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            551..1738
                     /locus_tag="VE686_10945"
     CDS             551..1738
                     /locus_tag="VE686_10945"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HYY84999.1"
                     /translation="MVLPSSIAAPVLLLILSLCGFSGALATRLIDPLITSIAADFAAS
                     VGVVALLSSAFALPFGLSQPFLGPIGDSIGKTWVIKLATAVLAVCLLASALAPGLTIL
                     FISRIFGGVAAGGIMPVCMALIGDSFPLAVRQVAMSRYIGATLVGQLVGVSVGGIVAE
                     WIGWRGVLGCAAGLGVLAAVAAITMLPRSARSRTPLRVDEAAARYRLVLGNPRSFVCF
                     GVVFLEGLAIYGVTPFIGDLLQSRGAGGLREAGFVIGGLGIGGLLYAFVVPVILRFAK
                     RPAMMAAGGLIAAMGLGGVGLEVAWTVQMVCMIVLGFGFFLLHNSVQTEVTELAPSAR
                     ASSFSLHAFSFFMGQALGPIVYGIALPGVGAAASLAGGAAVLAGTGLVASKLLGPPSR
                     END"
     gene            2102..>3945
                     /locus_tag="VE686_10950"
     CDS             2102..>3945
                     /locus_tag="VE686_10950"
                     /EC_number="3.4.24.-"
                     /inference="COORDINATES: protein motif:HMM:NF013594.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M48 family metalloprotease"
                     /protein_id="HYY85000.1"
                     /translation="MRVNGLYGHVRSNDLRSAVLFGGFVVAFHTLSILALVIPLAMLD
                     PEHAPLFGWTGYLVRWVPIVTAVGALLFAVQMAWHTRVVRGRTEFRFVNEAEEPRLCR
                     LVGPLAIAAGLPTPKVGVIESSALNAFACGIRRKDAVLVFTRGLIDALDDDELAAVAA
                     HEIVHIVNGDIRLIAATNVCLDTLRLLQHRRNPSFSKRASEAFSLPLLALTLPLLAVL
                     VLVVCFLRRLAVDGSHLTRRLIASAREFIADAEAVRLTQNPAALVSALSRVEGRSTLP
                     GLAAGQDAMMIDGAHAGPMATHPPIAERIAAIVAVTGSVALIAPARRDTRPPNLRAAA
                     NLAGRPRPWQGLGPWGSRQPRAGTAVAGASSQEGFNRFGLTPEMTLGALAALVAFAWV
                     HRADLGRPAAIAAALDPTSMQVLFAAGGKGLSCQLRGLGSLVQLAAKPTDCGEEAMIQ
                     ILTSHRGQGGTVGQITEPTARQTERGLQARGDGTFSNVATPAVKLAEVRTARCFQTSG
                     YKVGDRGLHSVTEEPAPDATISLPRWLAHSDNVARRVSESERAGRDGALLDYFKTRKS
                     HGEVIHRFFGDPGLAVARARYETAAHQLAITILRERLTDPAFGSGLSPL"
BASE COUNT          602 a         1331 c         1271 g          741 t
ORIGIN      
        1 ctcgtaacgc agatgtactt cccgggcgat cccctgctcg cgctcgatcc ggcggtgcgc
       61 cgccaacaga tgtgatcccc gttacgtcca gcgcctggat agatttgacg gaaccgctaa
      121 cgaaaaggcc aaacgccata gcggcaacgg taaatccgag cttctatggc aagaaacacg
      181 tcaccgtgag ctatgtatat ccgcaccggt tccccttcat ggaatccctc atgacggatt
      241 atataccgta gggcaggccg tcgtagccga ggaaaaatgg gcgaaggtga tgctcgcaaa
      301 ctcccagctg atgttctggc gcacgagcaa cctgtgttcg atgtgaacaa accggcgcta
      361 tgcgtcgaat tcccttcgac gtgtgccgct aagagctttc atcgcccgag ctaaatgcag
      421 cctttcgtga tcggtgacgc atcgggtgcg atcaccattg aggcaggagc cgacctacgg
      481 gcaccggagg cgtcacgcac gtcccgtcat aaccggcgcg cccctacgca gacgggcgcg
      541 aatgtggcac ttggtcctgc ccagctcgat tgcggcgccc gtgcttctgc tcatcctctc
      601 cctctgcggg ttctcgggcg cgctcgcgac gcgcctcatc gacccgctga tcacgtcgat
      661 agcggcggac ttcgccgcct cggtcggcgt cgtcgcgctc ctgtcctccg ccttcgcgct
      721 gccgtttggc ctcagccagc cattcctggg ccccatcgga gactccatcg gcaaaacctg
      781 ggtgatcaag ctcgcgacgg cggtgctggc cgtgtgcctg ctcgcgtcag cgctcgcgcc
      841 ggggctgacg atcctgttca ttagccgcat tttcggcggc gttgctgccg gcggcatcat
      901 gccggtgtgc atggcgctga ttggcgacag cttcccgctt gccgtgcggc aggtcgccat
      961 gagccggtac atcggcgcga cccttgttgg gcagctcgtc ggcgtcagtg tcggcggcat
     1021 tgtcgccgag tggatcggct ggcgcggcgt gctcggctgc gcggccgggc tcggcgtgct
     1081 cgccgcggtc gccgccatca ccatgctgcc gcgctcggcg cgcagtcgga ccccgctccg
     1141 ggttgatgag gccgccgccc gttaccggct ggtgctcggc aacccgcgct cgttcgtctg
     1201 cttcggcgtg gtcttcctgg aaggtcttgc gatctacggc gtcacgccgt tcatcggcga
     1261 cctcctgcag tcgcgcggcg ccggcggcct ccgggaggcc ggcttcgtca taggcggcct
     1321 aggaatcggc gggctcctct atgccttcgt agtgccggtg atcctcaggt tcgcgaagcg
     1381 gccggccatg atggcagccg gcggcctcat cgccgcgatg ggacttggcg gggtcggact
     1441 cgaggttgcc tggacggtcc agatggtctg catgatcgtc ctcgggttcg ggttcttcct
     1501 cctgcacaat tcggtgcaga ccgaggtcac cgaactcgcc ccttcagcgc gagcgtcttc
     1561 gttttcgctt catgccttca gcttcttcat gggacaggcg ctcggtccga tcgtgtatgg
     1621 catcgccctg ccgggtgtcg gcgcggcggc gagcctcgcc ggcggcgccg ccgtcctggc
     1681 cggtaccggc cttgtggcca gcaagctcct cgggccaccg tcccgtgaga atgactgaga
     1741 cacagtcatc ccgaactcaa acgagctgca cacctgagca cagagtagat tcagccgcag
     1801 ttaagcagca tgccgagatt ttctgttctc gcaacgaatc tgcaagcgta atgagcgtag
     1861 agaggaacgg ctagcgaagc gacttgcgcc aggagctcgt tgacgtggaa agccggtcca
     1921 cggcctcgcg ccggttctac aatgcggtcg gcgaacatgg cgcgaccctg cgccactgtc
     1981 ccgccagtgc cgtccaagct ccgcaagatg aacgtccgca tgccgttcga cctcggcatc
     2041 gagcgagttc cgatcgagcc ggccccgatc aaatcctaac atatcgctag gaggctacgc
     2101 catgcgggtg aacggtcttt acggacacgt ccgcagcaat gacctgcgtt cggccgtcct
     2161 gttcgggggc ttcgtcgtcg ccttccacac cctgtccatt cttgccctgg tcataccgct
     2221 ggcgatgcta gatccggagc atgcgcctct cttcggctgg acggggtatc tggtccgctg
     2281 ggtaccgatc gttacggccg tcggcgcgct tctgtttgcc gtgcagatgg cctggcatac
     2341 ccgggtggtt cgcggccgga cggaattccg tttcgtcaac gaggccgagg agccgcgtct
     2401 ctgccgcctc gtcgggccgc tggccatcgc ggccggattg ccaaccccca aagttggagt
     2461 gatcgaaagc tcggccctga acgcctttgc ctgcggcata cggcggaagg acgccgtgct
     2521 ggttttcacc cgaggactga tcgatgcgct ggacgatgac gagctggccg ccgttgcggc
     2581 gcacgagatc gtccacatcg tcaacggcga catccggctg atcgcggcca cgaatgtctg
     2641 tctcgatacc ctgaggctgc tgcagcaccg gcgcaatccc agcttctcta agcgagcctc
     2701 ggaggcattc agcctgcctc tgctcgcgct gacgctgccg ctcctggccg tgctggtcct
     2761 cgtcgtgtgc tttttgcgcc ggctggcggt cgacggcagc cacttaacgc gacgcctgat
     2821 cgcctccgcc cgcgagttca tcgccgacgc cgaagcggtg cggttgaccc agaaccctgc
     2881 cgcgctggtc tccgctctca gccgcgtcga gggacgcagc accctcccgg gtctcgcggc
     2941 cgggcaggac gcgatgatga tagacggcgc gcatgcgggt ccgatggcga cgcatccgcc
     3001 cattgccgag cggatcgcgg ccatcgtcgc tgtcaccggc tcggtggccc tgatcgcgcc
     3061 ggcccgccgc gatacgcgtc cgcccaatct tcgtgcggca gcgaacctcg ccggtaggcc
     3121 gaggccgtgg caagggctcg ggccctgggg ttcccggcag cctcgggctg gaacggcggt
     3181 cgcgggcgcc tcgtcgcagg aggggttcaa ccggtttgga ctgacgccgg agatgacgct
     3241 tggcgcgctc gccgcgctcg tcgcgttcgc ctgggtgcac cgcgccgacc ttggccggcc
     3301 tgctgccatc gctgcggcgc tggacccgac ctcgatgcag gtgctgttcg cagcgggcgg
     3361 caagggattg agctgccagc tccgcggact gggctcgctc gtccaactcg cagctaagcc
     3421 gaccgattgc ggcgaggaag ccatgatcca gattctgacc tcacatcgag gccagggcgg
     3481 aactgtggga caaatcaccg agccaacggc ccgtcagacg gagcgcggcc tgcaggcgcg
     3541 cggcgacggg accttcagca atgtcgcgac gcccgcggtt aagctggccg aggtgcgaac
     3601 agcacgttgc ttccagacct ctggctataa ggtcggcgat cgcggccttc actccgtgac
     3661 cgaagagccg gccccggacg cgacgatctc cctgccgcga tggctcgccc acagtgacaa
     3721 cgtagcccgt agagtgagcg agtccgagcg cgcggggcgt gatggcgccc tcctcgacta
     3781 cttcaagacg cgcaagtcgc acggcgaagt gatccaccgc ttctttggag accccggctt
     3841 ggcggttgct agggctcgct acgagacagc agcgcaccaa cttgcgatta ccatcttacg
     3901 cgagcggctg accgaccccg cgttcggttc gggcctgagc ccgct
//
LOCUS       DASQWN010000586         2115 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_258269, whole genome shotgun sequence.
ACCESSION   DASQWN010000586 DASQWN010000000
VERSION     DASQWN010000586.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2115)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2115)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2115
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_258269"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1025
                     /locus_tag="VE686_10955"
     CDS             <1..1025
                     /locus_tag="VE686_10955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019400344.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="helix-hairpin-helix domain-containing protein"
                     /protein_id="HYY85001.1"
                     /translation="RAGHRVEISVPQRGEKKELVQHALSNAREALARKNAETGSQARL
                     LAGLGEAFGLPHPPRRVEVYDNSHVMGTNAVGAMIVAGASGFMKTHYRTFNIKSEELT
                     PGDDYGMMREVLRRRFGRLVKEAPRQPSPGGGGSDRVSDPGWGDAASGESAGGVAASG
                     NAVTPALAFGATSPLQGEVGEGDEAFPAWPDLVLIDGGKGQLDAARQALAEVGVSDAD
                     VALVGIAKGRDRDAGRETFFIPGKAPLKLPPRDPALYFVQRLRDEAHRFAIGTHRAKR
                     KRELVANPLDEIPGIGPRRKRALLHAFGTVKAIQRAALEDLAKTPGVNAATARAVYEF
                     FHDGAG"
     gene            1076..1675
                     /gene="pgsA"
                     /locus_tag="VE686_10960"
     CDS             1076..1675
                     /gene="pgsA"
                     /locus_tag="VE686_10960"
                     /EC_number="2.7.8.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019400345.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008444 -
                     CDP-diacylglycerol-glycerol-3-phosphate
                     3-phosphatidyltransferase activity [Evidence IEA];
                     GO_process: GO:0008654 - phospholipid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CDP-diacylglycerol--glycerol-3-phosphate
                     3-phosphatidyltransferase"
                     /protein_id="HYY85002.1"
                     /translation="MSLASPARRSTALSLPNLLTYGRLVAVPAVVALMFWSHDDRERW
                     VALTIFVAAALTDYFDGYFARLYAQQSALGRMLDPIADKLLVAACLLMLVADETIVGW
                     SLWAAMVILCREILVSGLREFLAGLKVSVPVSRVAKWKTMLQLVAVGFLIAGPAGDRI
                     LPWTTDIGIVLLWAAAILTIYTGWDYFQAGIRHVINEDA"
     gene            1675..1932
                     /gene="moaD"
                     /locus_tag="VE686_10965"
     CDS             1675..1932
                     /gene="moaD"
                     /locus_tag="VE686_10965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003600610.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0006777 - Mo-molybdopterin cofactor
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin converting factor subunit 1"
                     /protein_id="HYY85003.1"
                     /translation="MRLKLVYFAWVRERIGKTEEEVELPPEATTVGDVLCWLKGRGDE
                     YAYAFENEGVIRTALDQKHVRAGASLLGARELAFFPPMTGG"
     gene            1934..>2115
                     /locus_tag="VE686_10970"
     CDS             1934..>2115
                     /locus_tag="VE686_10970"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="RidA family protein"
                     /protein_id="HYY85004.1"
                     /translation="MIRRIPGSAPTRSRAVVYNGVVHAVAASPEKTPSVYDQTRLALA
                     VIDDSLTEAGSDKSRIL"
BASE COUNT          313 a          751 c          713 g          338 t
ORIGIN      
        1 agcgtgccgg acaccgcgtc gagatttcgg ttccacagcg tggcgagaag aaggagctcg
       61 tccagcacgc gctttccaat gcgcgggagg cgctggcgcg caagaacgcc gaaacgggca
      121 gccaggcgcg gctgctggcc ggacttggcg aggccttcgg tctcccccac ccgccccgcc
      181 gcgtcgaggt ctacgacaac tcgcacgtca tgggcacgaa cgccgtcggc gccatgatcg
      241 tcgcaggcgc cagcggcttc atgaagacgc actaccgcac cttcaacatc aagtccgagg
      301 agctcacgcc gggcgatgac tacggcatga tgcgcgaggt cctgcgccgc cggttcgggc
      361 gcctcgtgaa agaggcgccg cgccaaccct cccctggagg gggagggtcg gatcgcgtca
      421 gcgatccggg gtggggtgac gccgcctccg gagagagcgc aggcggcgtc gccgcttctg
      481 gaaacgctgt cacccccgcc ctcgccttcg gcgcgacctc ccccctccag ggggaggtag
      541 gggaggggga cgaggccttc ccggcttggc ccgacctggt gctcatcgac ggcggcaagg
      601 ggcagctcga tgcggcgcgc caggctctcg ctgaggtggg cgtgagcgac gccgacgtgg
      661 ccctcgtcgg catcgccaag gggcgcgacc gcgatgccgg gcgtgagacc ttcttcattc
      721 ccggcaaggc gcccctcaag ctgccgcccc gcgaccccgc cctgtatttc gtccagcgcc
      781 tgcgcgacga ggcgcaccgc tttgcgatcg gtacgcatcg ggcgaagcgc aagcgcgagc
      841 tcgttgccaa cccgctcgac gagatcccgg gcatcgggcc gcggcgcaag cgcgcgctcc
      901 tgcacgcctt cgggaccgtg aaggcgatcc agcgcgccgc gctcgaagat ctcgcgaaga
      961 cgccgggcgt taacgccgcg acggcgcgcg ccgtctatga gttcttccat gacggggcag
     1021 ggtgacgccg gatgctgttg acgctccttg ccggcgcatg ttttgtgcgc gcctgatgtc
     1081 gctcgcgtcc cccgcccgcc gttccaccgc gctgagcctg ccgaacctgc tgacgtacgg
     1141 gcgtctcgtc gcggtgcctg ccgtcgtggc gctgatgttc tggtcccatg acgaccggga
     1201 gcgctgggtg gctctcacga tcttcgtcgc ggcggcgctc accgactact tcgacggtta
     1261 tttcgcgagg ctctatgccc agcagtcggc gctcgggcgc atgctcgatc ccatcgccga
     1321 caagctgctc gtcgccgcct gcctgctgat gctcgtcgcc gacgagacca tagtcggctg
     1381 gtccttgtgg gccgcgatgg tgatcctgtg ccgcgagatc ctcgtctccg gcctgcgcga
     1441 gtttctcgcc ggcttgaagg tcagcgtccc ggtgagccgc gtcgccaagt ggaagaccat
     1501 gctgcaactc gtcgccgtgg gcttcctcat cgccggcccg gcgggcgacc gcatcctgcc
     1561 ctggacgacg gacatcggca tcgtgctcct gtgggcggcc gccatcctca ccatctacac
     1621 ggggtgggac tacttccagg ccggcatccg tcacgtcatc aacgaggacg cgtgatgcgc
     1681 ctcaagctcg tctatttcgc ctgggtgcgc gagcgtatcg gcaagaccga agaggaggtc
     1741 gagctcccgc ccgaagcgac gacggtcggc gacgtgctgt gctggctcaa ggggcggggt
     1801 gacgaatacg cctacgcctt cgaaaacgag ggcgtcatcc gcaccgccct cgaccaaaag
     1861 cacgtgcggg cgggcgcgag cctcctgggc gcccgcgagc tcgcgttctt tccgcccatg
     1921 acaggaggtt gacatgatcc ggcgcattcc cggcagcgcc ccgacccgca gccgcgctgt
     1981 ggtctacaac ggcgtcgtcc acgccgtcgc ggcctcgccc gagaagacgc cgtccgtcta
     2041 cgaccagacc cggctggcgc tcgccgtcat cgacgatagt ctcaccgagg ccggcagcga
     2101 caagagccgg atcct
//
LOCUS       DASQWN010000587         2154 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_154268, whole genome shotgun sequence.
ACCESSION   DASQWN010000587 DASQWN010000000
VERSION     DASQWN010000587.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2154)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2154)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2154
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_154268"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(59..694)
                     /locus_tag="VE686_10975"
     CDS             complement(59..694)
                     /locus_tag="VE686_10975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015928458.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arylesterase"
                     /protein_id="HYY85005.1"
                     /translation="MLVVAAGMGFSARAQGAAMRPLKLVALGDSLTAGYSLPGEAAFP
                     AVLERALRAKGYAVSIANAGVSGDTTSGGLARLDWSVPDGTDGVILELGANDMLRGID
                     PNIPRQALDEILARLRERGIPVLLTGMYASRNLGADYVARFEAIFPDLANKYGVPLYP
                     FFLDGVAGVRALALPDGLHPTAKGVEVVVERILPAVERFVAQIAARPPAGG"
     gene            832..1524
                     /locus_tag="VE686_10980"
     CDS             832..1524
                     /locus_tag="VE686_10980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015824152.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HYY85006.1"
                     /translation="MTDKAIALENVDLSLGRGPARVHILKRLSLEVGRGEAIGLVGPS
                     GSGKSTLLMTMAGLERPDSGRVIVEGTDLSGLDEDGLARFRGRRIGIVFQSFHLIPTM
                     TALENVALPLELADADDAFERAEAELRLVGLGERLDHYPAQLSGGEQQRVAIARAMAP
                     NPAILVADEPTGNLDERTGDSIIELLFGLKRDRGGTLVLVTHDLHLAQRCDHIVRLRS
                     GRIEADADAAAA"
     gene            1545..>2154
                     /locus_tag="VE686_10985"
     CDS             1545..>2154
                     /locus_tag="VE686_10985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015950930.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HYY85007.1"
                     /translation="MHGSLPASPRPRRSRLPIALRFALRELRGGLRGFGIFLACIALG
                     VMAIAGVSSISRSLTEGLSREGRKILGGDMAFSLIHREASPAERAFLSARGRVSSVAT
                     MRAMAVAGDKGSALIELKAVDAAYPTAGALETDPAMTPADLLAPKDGAFGAGVDPGLL
                     ARLDLNLGDRISVGAATIELRARLLSEPDKIANGVGFGPRLIV"
BASE COUNT          310 a          787 c          734 g          323 t
ORIGIN      
        1 atcggcgacg acggcaatgc cgcgagacag acgatcaaca gccgcttctt gttccagctc
       61 agccgccggc cggagggcgc gccgcgatct gggccacgaa acgctccacc gccggcagga
      121 tgcgctcgac gaccacctcg acgcccttgg ccgtcggatg gaggccgtcc ggcagggcga
      181 gcgcgcgcac ccccgcgaca ccgtcgagga agaacgggta gagcgggacg ccgtacttgt
      241 tggcgaggtc ggggaagatc gcctcgaacc gcgcgacata gtcggcgccg agattgcggg
      301 aggcgtacat gcccgtcagg agcaccggga tgccgcgctc gcgcaggcgg gcgaggatct
      361 cgtcgagtgc ctggcgcggg atgttcgggt cgatgccgcg cagcatgtcg ttggccccga
      421 gctcgaggat gaccccgtcg gtcccgtccg ggaccgacca gtccaggcgc gcaagcccgc
      481 ccgaggtggt gtcgcccgat acgcccgcgt tggcgatcga gacggcgtag cccttggccc
      541 tgagcgcccg ctcgagcacg gccgggaagg cggcctcgcc gggcaggctg tagccggcgg
      601 tcaggctgtc gccgagcgcc acgagcttga gcggccgcat ggccgcccct tgcgcacggg
      661 cggaaaaccc catgcctgcc gcaacaacaa gcatcagcgt cgccatgacg aagccttgaa
      721 ggaagccgtg ttggcgcttc atgcggagat gacccatatg ctggcggacc aaggggcggc
      781 aggccctcgt aaaccccgct tcttcgaagc gcacacatcg ggcttccagg catgaccgac
      841 aaggccattg cgctcgaaaa cgtcgacctc agcctcggcc ggggtcccgc gcgcgtgcac
      901 atcctcaagc gcctttcgct cgaggttggg cgaggcgagg cgatcggcct cgtcgggccg
      961 tctggctcgg gcaaatcgac gcttctgatg accatggcgg gtctcgagcg gccggattcc
     1021 ggccgcgtga tcgtcgaggg cacggacctg tcgggcctcg acgaggacgg gcttgcccgc
     1081 ttccgcggcc gccgcatcgg catcgtgttc cagtcgttcc acctgatacc gaccatgacg
     1141 gcgctcgaga acgttgccct gccgctcgag ctcgccgacg ccgacgatgc cttcgagcgc
     1201 gccgaggccg agcttcgcct cgtcggcctc ggcgagcgcc tggaccacta tccggcgcag
     1261 ctctcgggcg gcgagcagca gcgcgttgcc attgcgcgcg ccatggcgcc gaaccccgcg
     1321 atcctcgtcg ccgacgagcc gaccggcaat ctcgacgagc gcacgggcga ctcgatcatc
     1381 gagctcctgt tcgggttgaa acgcgaccgc ggcggcaccc tggtgctcgt cacccacgac
     1441 cttcatctcg cacagcgctg cgaccacatc gtccgactgc gctcgggccg gatcgaagcc
     1501 gacgccgacg cggccgccgc ctgattgccg atgtcctgac cgccatgcat ggctcccttc
     1561 ccgcctcccc tcgcccgcgc cgatcccggc tgcccatagc cttgcgcttc gccttgcgcg
     1621 agctgcgcgg cggcctgcgg gggttcggca tcttcctcgc ctgcatcgcg ttaggcgtca
     1681 tggcgatcgc cggcgtgtcg tcgatctcgc gctccctcac cgaggggctg tcgcgcgagg
     1741 gccgcaagat cctcggcggc gacatggctt tcagcctcat ccatcgcgag gcgagcccgg
     1801 ccgagcgggc cttcctgtcg gcgcggggcc gggtgtcctc ggtcgccacc atgcgcgcca
     1861 tggcggtcgc gggggacaag ggttcggccc tcatcgagct gaaggccgtc gatgccgcct
     1921 atccgactgc cggcgccctc gagaccgatc cggccatgac gccggccgat ctccttgccc
     1981 ccaaggacgg cgcctttggc gccggcgtcg accccggcct gctcgcccgg ctcgacctca
     2041 acctcgggga ccgcatcagc gtgggcgcgg cgaccatcga gctgcgggcc cgccttctgt
     2101 cggagcccga caagatcgcc aacggcgtcg gcttcgggcc gcggctgatc gtgt
//
LOCUS       DASQWN010000588         2460 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_855848, whole genome shotgun sequence.
ACCESSION   DASQWN010000588 DASQWN010000000
VERSION     DASQWN010000588.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2460)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2460)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2460
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_855848"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..840)
                     /locus_tag="VE686_10990"
     CDS             complement(<1..840)
                     /locus_tag="VE686_10990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009494020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016811 - hydrolase activity, acting on
                     carbon-nitrogen (but not peptide) bonds, in linear amides
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetamidase/formamidase family protein"
                     /protein_id="HYY85008.1"
                     /translation="MASHRVEAGPDTVHWGYFDAALPPVLTVDSGDTVTVSTVSGGRD
                     MMPGSPLKVPAALAAVQAAHTPKLPGHMCTGPVAVRGARAGQVLEVRIKAIELHYDWG
                     YTYSAPLKGALPDDFTEMHLMHIPLDKERMTGRLPWGLELPLRPFFGVMAVAPPAPWG
                     AVSTLPPRRNGGNLDNKELVAGTTLYLPIHADGALFSVGDGHGVQGDGEVCVTAIETG
                     LIGTFELHLRDDMELIWPTAETPTHVMTMAFDPDLDDCVVIALRDMVDLIAARTGLAK
                     AEAY"
     gene            complement(856..1293)
                     /locus_tag="VE686_10995"
     CDS             complement(856..1293)
                     /locus_tag="VE686_10995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011470956.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HYY85009.1"
                     /translation="MSPKAPGALDRYVGTRMRVRRLEVGMSQEKLGEFLGITFQQVQK
                     YEKGTNRVSISRLHQIAQALETPISYFYEGAADGLDAGGSLADPELAGVASDFLKLGE
                     GRALMRSFVGMTTAQRRQVIEFVRQIAGDVDNPARKAPSRKPS"
     gene            1607..>2460
                     /locus_tag="VE686_11000"
     CDS             1607..>2460
                     /locus_tag="VE686_11000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015689347.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HYY85010.1"
                     /translation="MRPALLKIAVACALAPFAVSHALSADLKIALIAGKTGPLEAYAK
                     QTETGFMMGLEYLTKGSMTWQGRKVVVVVKDDQLKPDLAKTLLEQAYNDEKVDFAVGT
                     TSSAAALAMLPVVEESGKVLIVEPAVADIITGEKWNKYIFRTSRNSTQDAYAAAAALP
                     ASGEVSIATLAQDYAFGKDGVAALKSAIQAIRPNVKVVFEEYAPQNATDFTASAQRLF
                     DALKDKPGKKIISIIWAGQQPLPKIADLKPERYGIEIAPGGNILPVMKLYKNYPGMEG
                     AIYYYHAFP"
BASE COUNT          420 a          842 c          802 g          396 t
ORIGIN      
        1 gtaggcctcg gccttggcga gccccgtgcg ggcggcgatg agatcgacca tgtcgcgcag
       61 cgcgatgacg acgcagtcgt cgaggtcggg atcgaaggcc atggtcatga cgtgcgtcgg
      121 ggtctccgcc gtcggccaga tcagttccat gtcgtcccgc aggtggagct cgaacgtgcc
      181 gatgaggccg gtctcgatgg cggtgacgca gacctcgcca tccccctgca ccccgtggcc
      241 gtcgccgacc gagaacagcg cgccgtcggc gtggatcgga aggtagagcg tcgtgccggc
      301 gacgagctcc ttgttgtcga ggttgccccc gttgcggcgc ggcggcagcg tgctgaccgc
      361 gccccaaggc gccggcggcg cgaccgccat cacgccgaag aacggccgca ggggcagctc
      421 gaggccccag ggcaggcgcc cggtcatccg ctccttgtcg agcggaatat gcatcaggtg
      481 catctcggtg aaatcgtcgg gcagggcgcc cttcaggggc gccgagtagg tgtagcccca
      541 gtcgtaatgc agctcgatcg ccttgatgcg gacctcgagc acctggcccg cgcgggcgcc
      601 gcgaacggcg accggacccg tgcacatgtg acccggaagc ttcggcgtgt gcgccgcctg
      661 cacggccgcg agcgcggccg ggaccttcag cggggagccc ggcatcatgt cgcgcccgcc
      721 cgacacggtc gagaccgtaa ccgtgtcgcc ggagtcgacc gtcagcacag gcggcagggc
      781 cgcgtcgaag tagccccagt ggacggtgtc cggtccggcc tcgacgcggt ggctcgccat
      841 ggtgtgtccc tgccgtcagc tcggcttgcg tgaaggcgcc ttgcgcgccg ggttgtcgac
      901 atcgccggcg atctgccgga cgaactcgat gacctggcgc ctctgcgcgg tcgtcatccc
      961 gacgaagctg cgcatcaggg cgcgcccctc gccgagcttg agaaagtccg aagccacccc
     1021 cgcgagctcc ggatcagcga ggctccctcc ggcatcgagt ccatcggcag ccccctcata
     1081 gaaatagctg atgggcgtct cgagcgcctg cgcgatctgg tgcagtcggc tgatgctgac
     1141 gcgattcgtg cccttctcgt acttctgcac ttgctggaaa gtgatgccga ggaattcccc
     1201 gagcttctcc tggctcattc caacctcgag ccggcgcacc cgcatgcgag ttccgacgta
     1261 gcggtcgagc gcccccggcg ccttaggact catcatcgct tctccttccc ctgcgtgtcg
     1321 gctgtttggc ctaaaggcgg gtgcctgcgc tccagcgcct tggcatttcg ggaggattcc
     1381 cgatgacacg ctcaagcttg gtgccgcctt ccgcccggaa gagcaagggg atatctacga
     1441 ctttcgacta ggcctgattg tagcagccgg cggagtcatg cttttggcgc gcggccccct
     1501 ccaaccatag attttcccgg gcgaaggtca gccgggcttg atccagcttg acaggcaccg
     1561 cgacggcccg cgacacatga gtgacaaaca tacccaggag ggggccatgc ggcctgcgct
     1621 gctcaaaatc gccgtcgcct gcgcgttggc tccgtttgcc gttagccatg cactcagcgc
     1681 ggacctcaag atcgcgctga ttgccggcaa aacgggcccg ctcgaggcct acgcgaagca
     1741 gaccgagacc ggcttcatga tgggccttga gtacctcacg aagggctcca tgacgtggca
     1801 gggccgcaag gtcgtcgtgg tcgtcaagga cgaccagctc aagcctgatc tggccaagac
     1861 gctgctcgag caggcctaca acgacgagaa ggtggacttc gccgtcggca cgacctcctc
     1921 ggccgccgcg cttgccatgc tcccggtcgt cgaggaaagc ggcaaggtgc tcatcgtcga
     1981 gccggcggtc gccgacatca tcaccggcga gaagtggaac aagtacatct tccgcacctc
     2041 ccggaactcg acgcaggacg cctacgcggc cgcagcggcc ctgccggcga gcggcgaggt
     2101 gagcatcgcc acgctcgcgc aggactacgc cttcggcaag gacggcgtcg ccgccctgaa
     2161 gagtgccatc caggccatcc gcccgaacgt gaaggtggtg ttcgaggaat acgcgccgca
     2221 gaacgccacc gatttcacgg cctcggcgca gcgcctgttc gacgcgctca aggacaagcc
     2281 cggcaagaag atcatctcga tcatctgggc cggccagcaa ccgctgccga agatcgccga
     2341 cctcaagccc gagcgctacg gcatcgagat cgcaccgggc ggcaacatcc tgccggtgat
     2401 gaagctctac aagaactacc ccggcatgga aggcgccatc tactactacc acgcgttccc
//
LOCUS       DASQWN010000589         2669 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_856541, whole genome shotgun sequence.
ACCESSION   DASQWN010000589 DASQWN010000000
VERSION     DASQWN010000589.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2669)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2669)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2669
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_856541"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(151..591)
                     /locus_tag="VE686_11005"
     CDS             complement(151..591)
                     /locus_tag="VE686_11005"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY85011.1"
                     /translation="MTRSTLFGYIVEKEEDDDSVVITVSGPMARTFLQRLAGDPRNRH
                     GTGLLPAPLPWRALGSRPVEINTGRERQPNGADDKPDLKDIFGQGFDRSYSEFDAQLA
                     TYRSLLREEEPRPADRPSPNGSGRGARRKARRQGTSKRATARGD"
     gene            complement(661..846)
                     /locus_tag="VE686_11010"
     CDS             complement(661..846)
                     /locus_tag="VE686_11010"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY85012.1"
                     /translation="MNCFALAKRAKSVGNTRHARAMLAMGRRALALSKAELRLWKRGL
                     ALARRSFATHRALVATR"
     gene            1266..>2669
                     /locus_tag="VE686_11015"
     CDS             1266..>2669
                     /locus_tag="VE686_11015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015931872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HYY85013.1"
                     /translation="MHPLRGRRRFAGRVQPLEAELEALHDRLWRLAESEERHRGLVEA
                     QLDLIVRRDGAGRITFANDGYAALVGVARDELLGSALEPAVADARALTMRPDGVRLVD
                     EAFAMPDGLRWIGWIETTIPGPDGPETLRAGRDVTQRVAAERALEEARARAEAASEAK
                     SRFLANVSHEIRTPLSGILGMADLVLDTDVDPEQATYAEAIKASGETLLSLIDEILDF
                     SRIEAGKLELAAEPFGLEPLVQGVVELLAPRAQGKGIEIAGFVAQDAPRRVVGDADRL
                     RQVLVNLAGNAIKFTDVGGVGIVVEPGAAGGITITVSDTGPGIAPDRVASLFEEFEQG
                     DGSASRHHGGAGLGLAITRRIVERMGGSITVSGALGRGAGFALHLPLDAIEDAGSRTA
                     MPGVAGRRVVIVAQSPFEAPLLARRLREAGAAVSVAEPGAGLRTALAARTDAVLADRA
                     LGDDAVREVAREARAAGA"
BASE COUNT          381 a          925 c          969 g          394 t
ORIGIN      
        1 ctggaaggtc tcggcgcgcc agaggacgag gggccactcg agtggctgcc gcacgatcgc
       61 ggccagccgc tcgtcgtcgg cgggacggag ctcgggccgg caggtcagca gaacgaccga
      121 ctcttcgcgc gacagctgga ccatggcgga ttagtcgcct cgcgcggtcg cccgcttcga
      181 cgttccctgg cggcgcgcct tgcgcctcgc accgcgcccc gagccgttcg gcgacggacg
      241 gtcggccggc cggggctcct cctcacggag gaggctgcgg tacgtggcaa gttgtgcgtc
      301 gaactcggaa taggagcggt cgaagccctg gccgaagatg tctttgagat cgggcttgtc
      361 gtcagcgccg ttgggctggc gttcgcgtcc ggtgttgatc tcgaccggcc tcgagccgag
      421 ggctcgccag ggcagcgggg cgggcaggag cccggtcccg tgccggttgc gcgggtcgcc
      481 ggcgaggcgc tggaggaacg tcctcgccat cgggccggag acggtaatga cgacggagtc
      541 gtcatcctcc tccttctcca cgatgtatcc gaacaaggtc gatcgcgtca ttcggaaatc
      601 tccgcgtcag tggccgcgcc ccgccttgcg gcgcttgggc agtgaccggc gccgccgcgg
      661 ctaccgggtc gcgacgagcg cgcgatgcgt cgcgaacgag cggcgcgcga gtgcgaggcc
      721 gcgcttccac agcctgagct cggccttgga cagcgcgagg gcccgccgtc ccatcgccaa
      781 catcgcgcgg gcgtgccgtg tgttgccgac gctcttcgcg cgcttggcga gggcaaagca
      841 gttcaaggcg agctgccggt gacggccggc cggcgacgcc gcgaagccgc cggctttcga
      901 tctggtgctc cgccgcgcgg atgtctgcgc agctctgaat ggagctgcct tccaccttct
      961 tgcaccatag gacgctctga aaccggccat tgaatgtccc tcctcaaagc aagtaacggt
     1021 tgcgccagaa aagcatactt caggacgtcg cgcaagcgac gccgatagcc gagattccga
     1081 ggctgaaggg accgttttgg caagcgagcg gcagaggcgt cccaaggctt aaccctgttc
     1141 ctcaagcggc cgttcagtga tgccgtgcaa cgctgggcca cggaggctct gaagcgatga
     1201 ggcgtgtcgc gttgttcagt tctgccgcag cctggctgcg aggggcggcc aacgcagcgg
     1261 ctgcggtgca ccccctgcgc ggccgccgac gtttcgccgg gcgcgttcaa ccgctcgagg
     1321 ccgagctcga agccctgcac gaccgcctgt ggcgcctggc ggaaagcgag gagcgccatc
     1381 gcgggctcgt agaggcgcag ctcgacctca tcgtccgccg cgacggggcg gggcggatca
     1441 ccttcgccaa cgacggttac gccgcgctcg tcggcgtggc gcgtgacgaa ctcctcgggt
     1501 ccgcgctcga gcccgcggtc gcggacgcgc gggcgctgac catgcgtccc gacggcgtgc
     1561 ggctcgtcga cgaggccttc gccatgcccg acggcctgcg ctggataggc tggatcgaga
     1621 ccacaatccc gggccccgac ggacccgaga cgcttcgggc cgggcgcgac gtgacgcagc
     1681 gcgtcgcagc cgagcgcgca ctggaggagg cgcgagcacg agccgaggcg gcgagcgagg
     1741 caaagtcgcg cttcctcgcc aacgtcagcc acgagatccg cacgccgttg agtggcatcc
     1801 tcggcatggc cgacctcgtt ctcgacacgg acgtcgatcc cgagcaggcg acctacgccg
     1861 aagccatcaa ggcgtcgggc gagacgctgc tctcgctcat cgacgagatc ctcgacttct
     1921 cccgcatcga ggcgggcaag ctggagctgg cggcggagcc gttcggcctc gagcccctgg
     1981 tgcagggtgt ggtcgaactc ctcgcgccgc gcgcgcaggg caagggcatc gagatcgccg
     2041 gcttcgtcgc gcaggacgcg ccgcggcgcg tcgtcggcga cgccgaccga ctgcgccagg
     2101 ttctcgtcaa cctcgccggt aacgccatca agttcacgga cgtcggcggc gtgggcatcg
     2161 tcgtcgagcc aggcgccgca ggcgggatca cgatcaccgt gagcgacacc gggccaggca
     2221 tcgcgccgga ccgggtggcg agcctgttcg aggagttcga gcagggcgac ggctcggcga
     2281 gccggcacca tggcggcgcc ggtctcggcc tcgccatcac ccgccgcatc gtcgagcgca
     2341 tgggcggttc catcacggtc tcgggtgcgc ttgggcgcgg tgcaggtttc gccctgcatc
     2401 tgccgctgga cgccatcgag gatgccgggt cgcgcacggc catgcccggg gtggcggggc
     2461 gccgcgtcgt catcgtcgcg caatcgcctt tcgaagcgcc gctccttgcg cgccggctca
     2521 gggaagcagg tgccgccgtc tcggttgcag agcctggggc aggactccgc acggcgcttg
     2581 ccgcccgcac cgacgccgtt ctggccgacc gggcgctcgg cgacgatgcc gtgcgcgagg
     2641 tcgcacgcga ggcccgcgcc gccggcgcc
//
LOCUS       DASQWN010000590         2559 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_460050, whole genome shotgun sequence.
ACCESSION   DASQWN010000590 DASQWN010000000
VERSION     DASQWN010000590.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2559)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2559)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2559
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_460050"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..265
                     /locus_tag="VE686_11020"
     CDS             <1..265
                     /locus_tag="VE686_11020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012497889.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="shikimate kinase"
                     /protein_id="HYY85014.1"
                     /translation="LTFELVLSSFFTVWLKARPEEHMGRVRDQGDLRPMGDDRSAMQE
                     LRAILTSREPLYARAGAVVDTAGLTVERAADRLVAVLEPAPSR"
     gene            complement(269..1609)
                     /locus_tag="VE686_11025"
     CDS             complement(269..1609)
                     /locus_tag="VE686_11025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008974753.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HYY85015.1"
                     /translation="MDKDAVREPARDTPVHGEYEVVVLGGGPAGIAAAASAAGAGRRT
                     LLVERYGFLGGMGTAAGVTNFCGLHANIHGDIRRVVHGVADELLDRIDRLGGLNEPHV
                     VLGRTMAQAYDTAAYKCAADDLLTSRGAQLLFHALGAGVVLGEGGAVEALLVETKSGR
                     RAVRGQVFVDCSGDGDLAAWAGAPFAVGDGVGNMLYPTMMFRVNGVDPEAAGDAWRTI
                     PQLMADAERAGRRRFPRRGAIVRPQRHPTEWRVNVTQLTTADGRAVSGIDAEELSAAE
                     AQGRRQAIEYFGFLKDEVPGFAASYIVEIAPQLGIRETRRVTGRHVLVSEEVISCASF
                     ADSMGVNGWPIEKHVAGDVEWIWPDIPASRGYNQLPYRMLLPLGVPNLLVAGRCASMD
                     HEAQSAARVSGACFVMGQAAGTAAHLALATGQELATIDVAALQARLERDGTWLG"
     gene            1786..>2559
                     /locus_tag="VE686_11030"
     CDS             1786..>2559
                     /locus_tag="VE686_11030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018269149.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HYY85016.1"
                     /translation="MAQAPTKLRVGVLRLSSSGPVFIAQERGYFREAGIDIDFKYFDA
                     AQPIAVAIASGDLDVGVTALTAGLFNLANKGAIRVVAGQSREAAGFPLIGYLATKAAY
                     EAGLKTPKDLAGRTIGMTQVGSSFHYSMGLLARKYGFDLSKTRLVPLQSMSNVASAVK
                     GGRVDAALLPATAAQPLIDSGDAKLLGWVGDETPWQLGGVFAGPNFIEKNRDAMVRFL
                     AAYQKGARDYHDILLKPQKEGVTPLDDTTRPVLAMIAKNV"
BASE COUNT          372 a          947 c          878 g          362 t
ORIGIN      
        1 cctcacgttc gagctcgtgc tctcgtcgtt cttcaccgta tggctgaagg caaggcccga
       61 ggagcacatg ggccgcgtgc gcgaccaggg cgacctccgc cccatggggg acgaccgctc
      121 ggccatgcag gagctgcgcg ccatcctcac cagccgcgag ccgctctacg cccgcgccgg
      181 agccgtggtc gacaccgccg gcctcaccgt cgagcgcgcc gccgaccgtc tggtcgctgt
      241 tcttgaaccg gccccgtccc gctgaggctc acccgagcca ggtgccgtcg cgttcgagcc
      301 gcgcctgcag ggcggcgacg tcgatggtcg ctagctcctg accggttgcc agggcgaggt
      361 gcgccgccgt gccggccgcc tggcccatga cgaagcaggc gccgctcacg cgcgccgccg
      421 actgcgcctc gtggtccatg gacgcgcagc gcccggccac gagcaggttg ggcacgccga
      481 ggggcagcag catgcggtag ggtagctggt tgtagccgcg cgacgccggg atgtcgggcc
      541 agatccattc cacgtcgccg gcaacgtgct tctcgatcgg ccacccgttg acgcccatgc
      601 tatcggcaaa gctcgcgcag gagatcacct cctcgctgac taggacgtgg cggcccgtga
      661 cgcgccgggt ctcgcggatg ccgagctgcg gcgcgatctc gacgatgtac gacgcggcaa
      721 agcccggcac ctcgtccttc agaaatccaa agtattcgat cgcctggcgc cgtccttgcg
      781 cctcggcggc gctgagttcc tcggcgtcga tgccgctgac ggcgcgaccg tctgcggtcg
      841 tcagctgggt gacgttgacc cgccactccg tcgggtgccg ctgcggccgc acgatcgcgc
      901 ccctgcgcgg gaagcggcgg cggcccgccc gctccgcgtc cgccatgagc tgcgggatgg
      961 tgcgccaggc gtcgcctgcg gcttccggat caacgccgtt cacccggaac atcatggtcg
     1021 ggtagagcat gttgccgacc ccgtcgccga ccgcgaaggg cgcacccgcc caggccgcga
     1081 gatcgccgtc gcccgagcag tcaacgaaga cctgcccgcg cacggcgcgc cggcccgatt
     1141 tggtctcgac gaggagcgcc tcgaccgcgc cgccctcccc aaggaccact ccggccccga
     1201 gggcgtggaa caggagctgc gcgccgcgcg acgtcaggag atcatcggct gcgcatttgt
     1261 aggccgcggt gtcgtaggcc tgcgccatcg tccggccgag cacgacatgc ggctcgttca
     1321 ggccgccgag ccggtcgatg cggtccagga gctcgtcggc gacgccgtgc accacgcggc
     1381 ggatgtcgcc gtggatgttg gcgtgcagcc cgcagaagtt cgtgacgccg gcagcggtgc
     1441 ccatcccgcc gaggaagccg tagcgctcga cgaggagcgt gcgccgcccc gcacctgcgg
     1501 cgctcgccgc ggccgcaatg ccggccggcc cgccaccgag cacgacgacc tcgtactcgc
     1561 catgcaccgg cgtgtcgcgc gccggctcgc gcaccgcgtc cttgtccatg gcccgggacc
     1621 atcgagcggg gccgcagcgc ggtcaagcgc ggttgccgtg cgccggggtg cgccgtagaa
     1681 gcggaaaagc gacaactcgg gagtgaaacg atgcgggtca gccggcgtga gatcatccga
     1741 gggttggcgg cggctgcggc cctcacggcg gccggagccc ccgccatggc gcaggccccg
     1801 accaagctgc gcgtcggcgt gctgcggctg tcgtcctccg gcccggtgtt catcgcgcag
     1861 gagcgcggtt acttccgtga ggccggcatc gacatcgact tcaagtactt cgacgcggcc
     1921 cagcccattg ccgtagccat cgcgtcgggc gatctcgacg tcggcgtcac cgccctcacg
     1981 gccggattgt tcaacctcgc caacaagggc gccatccggg tcgtcgccgg ccagagccgc
     2041 gaggccgccg ggttccccct catcggctac ctcgccacca aggccgccta cgaggcgggc
     2101 ctgaagacgc cgaaggacct cgccggccgc accatcggca tgacgcaggt cggctcgagc
     2161 ttccactaca gcatggggct gcttgccagg aagtacggct tcgacctctc gaagacccgc
     2221 ctcgtcccgc tgcagtccat gagcaacgtg gcgtcggccg tgaagggggg cagggtcgat
     2281 gccgccctcc tgcccgcgac cgccgcgcag ccgctcatcg attcgggcga cgccaagctg
     2341 ctcggctggg tcggcgacga gacgccgtgg cagctgggcg gcgtgttcgc cggcccgaac
     2401 ttcatcgaga agaaccgcga cgccatggtt cgcttcctcg cggcctacca gaaaggcgcg
     2461 cgcgactacc acgacatcct gctcaagccg cagaaggagg gcgtcacacc cctcgacgac
     2521 acgacgcggc cggtgctcgc catgatcgcc aagaatgtg
//
LOCUS       DASQWN010000591         2010 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_550951, whole genome shotgun sequence.
ACCESSION   DASQWN010000591 DASQWN010000000
VERSION     DASQWN010000591.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2010)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2010)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2010
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_550951"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..195)
                     /locus_tag="VE686_11035"
     CDS             complement(<1..195)
                     /locus_tag="VE686_11035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012254652.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0043953 - protein transport by the Tat
                     complex [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="twin-arginine translocase TatA/TatE family
                     subunit"
                     /protein_id="HYY85017.1"
                     /translation="MGGASIWHWIVVGLIVMLLFGRGKISEMMGDVAKGIKAFKKGMA
                     EDETPTTTAVPPPSAGEPVRT"
     gene            complement(364..1071)
                     /gene="scpB"
                     /locus_tag="VE686_11040"
     CDS             complement(364..1071)
                     /gene="scpB"
                     /locus_tag="VE686_11040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011664110.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_process: GO:0007059 - chromosome segregation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SMC-Scp complex subunit ScpB"
                     /protein_id="HYY85018.1"
                     /translation="MENRATVVPFKPPQARGAPDHAEAMRIAEALLFASAEPLSSQEL
                     AARLPEGGDIEAVLADLVEHYAPRGVNLVRIAGKWSFRTSSDLAFLLARDVVEPRKLS
                     RAAMETLAIVAYHQPVTRAEIEDIRGVATSKGTLDTLLETGWIRLRGRRKAPGRPVTY
                     GTTAGFLEHFGLDAIGDLPGLEELKGSGFVEGRAATALTVPLPSDDTTLRDDEEPLDD
                     DLFPPPLDPGPEVASED"
     gene            complement(1075..1884)
                     /locus_tag="VE686_11045"
     CDS             complement(1075..1884)
                     /locus_tag="VE686_11045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020175643.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0007059 - chromosome segregation [Evidence
                     IEA];
                     GO_process: GO:0051301 - cell division [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ScpA family protein"
                     /protein_id="HYY85019.1"
                     /translation="MAERLAFDDVDRVERAEGEPGLRVDVDGFEGPLDLLLELARRQK
                     VDLHRISILALAEQYLVFVEEARRLRLELAADYLVMAAWLAYLKSRLLLPEPPRGEEP
                     SASDLATALALRLRRLEAIRAAAKKLDERDRLGRDVFARGRPEPIDVRAEPRWEATLY
                     DLLSAYAKQRNRQLNAHVTMPKRHVWSLNEAREALERLIGYAADWTALDHYLVRYMVE
                     PAMRSTVLATAFSATLELVREGRIVLRQDRPFAPLWVRAEAQAAPAAHGEV"
BASE COUNT          298 a          685 c          754 g          273 t
ORIGIN      
        1 tgtccgcacc ggctcgcccg cgctcggcgg cggtacggcc gtggtggtcg gggtctcgtc
       61 ctcggccatg cccttcttga aggccttgat gcccttggcg acgtcgccca tcatctcgga
      121 gatcttgccg cggccgaaca gcagcatcac tatcaggccg acgacgatcc agtgccaaat
      181 gcttgcgcca cccatggcga aacctcctac gcccgagcat tccgctcaag cctcactcgc
      241 cgccaaccta cgggggggag gtggcgaaaa caagaaactt cggccgcgca aggccacccc
      301 ccgacatcgt gtctcaggca tggtgaacgg cggcgacggg gccggcgcgc gagcccgcgg
      361 tcgtcagtcc tcgctcgcga cctccgggcc ggggtcgagg ggcggcggga agaggtcgtc
      421 gtcgaggggc tcctcgtcat cgcgcagggt cgtgtcgtcc gagggaagcg ggacggtcag
      481 cgccgtcgcg gcgcggccct cgacgaagcc cgaccccttg agctcctcga ggcccggcag
      541 gtcgccgatg gcatcgaggc cgaaatgctc gaggaagccc gccgtggtgc cgtaggtcac
      601 cggccggccc ggcgccttgc ggcggccgcg caggcgtatc catccggtct cgagcagggt
      661 gtccagagtg cccttcgagg tcgcgacgcc gcggatatcc tcgatctcgg cccgggtgac
      721 gggctggtga taagcgacga tcgccagcgt ctccatggcg gcgcgcgaca gcttgcgggg
      781 ctcgacgacg tcgcgcgcca gcaggaaggc gaggtcgctc gaggtccgga agctccactt
      841 ccccgcaatg cggacgaggt tcacgccccg gggcgcgtag tgctcgacga ggtcggcgag
      901 gacggcctcg atgtcgccgc cctcgggcag gcgggccgca agctcctgcg acgacaaggg
      961 ctcggcggac gcaaacagca gcgcctcggc gatgcgcatc gcctcggcgt gatcgggtgc
     1021 gccgcgggcc tggggcggct tgaacgggac gacggtggcg cggttttcca tggctcagac
     1081 ctccccgtgc gcggcaggcg ccgcctgcgc ctcggcgcgc acccaaagcg gggcgaatgg
     1141 acgatcctgc cgcaagacga tcctgccctc ccggacgagc tcgagggtgg ccgagaacgc
     1201 cgtcgcgagc accgtcgagc gcatggccgg ctcgaccatg tagcgcacca ggtagtggtc
     1261 gagggcggtc cagtcagcgg cgtagccgat caggcgctcg agcgcctcgc gggcctcgtt
     1321 gagggaccac acgtggcgct tgggcatggt cacgtgggca ttgagctgcc ggttgcgctg
     1381 cttggcgtag gccgagagga ggtcgtagag ggtcgcctcc caccgcggct cggcgcggac
     1441 atcgatcggc tcggggcggc cgcgggcgaa cacgtcgcgc ccgagccggt cgcgctcgtc
     1501 gagcttcttc gccgcggcgc ggatggcctc gaggcggcgc aggcgcaggg cgagcgcggt
     1561 ggcgaggtcg gacgccgacg gctcctcccc cctcgggggc tccggcagga ggaggcggga
     1621 tttgaggtag gcgagccagg ccgccatgac gaggtagtcg gccgcgagct cgaggcgcag
     1681 ccggcgcgcc tcctcgacga aaacgaggta ctgctcggca agggccagga tggagatgcg
     1741 gtggaggtcg accttctgcc ggcgggcgag ctcgagcagg aggtcgaggg gcccctcgaa
     1801 cccgtccacg tcgacgcgca ggccgggctc gccctcggcg cgctccaccc tgtccacgtc
     1861 gtcgaatgcc aaacgctccg ccatcgcggt cccgaatcac cagtgaggta gaatcggcgc
     1921 cctaggcagc aacggcaagg gcggcgtcga ggcgcgcccg cgcttccaca ggatcgaagg
     1981 gctcggggac gtggcggatg cggccgagcg
//
LOCUS       DASQWN010000592         2970 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_155066, whole genome shotgun sequence.
ACCESSION   DASQWN010000592 DASQWN010000000
VERSION     DASQWN010000592.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2970)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2970)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2970
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_155066"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..895
                     /locus_tag="VE686_11050"
     CDS             <1..895
                     /locus_tag="VE686_11050"
                     /inference="COORDINATES: protein motif:HMM:NF022834.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF2877 domain-containing protein"
                     /protein_id="HYY85020.1"
                     /translation="FRTMPEIAIAGRIARRAMRDGTGGRVRAVFDRSFYVDLDGQWIC
                     LGPQTLGAGPLNALWHDGGAVPLPRRGDPVSFGAGTLVIAATPFAQIRLGPEPPPAVP
                     RPWTAATLAHGLRQLERVAEPAAPGEGLGSVISGRVGRSPCALAARAPVAYLNELVLS
                     RCREGCLPDFDPAKLAPLVGLGPGLTPSGDDFLGGALVALTAIGLLDLRDAIWTGLRP
                     HAAEGTNDIARAHLTAAAEGECADALDQALGALLSGGDEVVSALRAVAAVGHTSGWDA
                     LAGVVVVLRAAAAGQASAEAA"
     gene            complement(903..1409)
                     /locus_tag="VE686_11055"
     CDS             complement(903..1409)
                     /locus_tag="VE686_11055"
                     /inference="COORDINATES: protein motif:HMM:NF019301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DoxX family membrane protein"
                     /protein_id="HYY85021.1"
                     /translation="MRDWTLLLARLAMAACLLPSAIAHVSNVSGLALSLWMKGMPFSH
                     GVATACAIAELFGALALALGLAPRLTVSALASSLVITTGTLHRFWDVPGSARALEQAV
                     FLGNAAMLAALAFYVVSGPGAWSWQAFWRPAASPAPQSAPKKQPRPRKPRAKAAPAAK
                     EQELAEAA"
     gene            complement(1542..2597)
                     /locus_tag="VE686_11060"
     CDS             complement(1542..2597)
                     /locus_tag="VE686_11060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009491218.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histone deacetylase family protein"
                     /protein_id="HYY85022.1"
                     /translation="MKLFFSEAQLAHQPKQYMVHGRIVDPFENPSRAITLIDALAAVG
                     LDRVEPDDFGREPILSVHDEHYVTFLEGAYARFKELPNHGPEVLPNVHPYLGAGADLA
                     RRGPPRPTGIIGQAGWYVGDLSCAMMEGTYRAAYASAQTAIAGAQAVSAGEQAAFSLC
                     RPPGHHAYADRASGFCYFNNAAIAAEVLRRTYQKVAIIDFDTHHGDGTQAIFYRRRDV
                     FYGSVHTDPSAYYPHFAGYADETGAGDGEGANLNLPLAWGSGDDAFIDANERLCSAVE
                     RFQADALVLSAGWDAHEADPLSRLTVTTEGFRRIGEVWGKLRLPTVIVQEGGYSLEVI
                     EDAAPAFVASFRDLAGT"
     gene            2699..>2970
                     /locus_tag="VE686_11065"
     CDS             2699..>2970
                     /locus_tag="VE686_11065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011439935.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HYY85023.1"
                     /translation="MALKDIVGIDHAVVLVRDLDQGAAAWRRLGFTISPRGTHSPQMG
                     SGNYTIMLGPDYIELLGIIAETPLNAASRAFLSRRGEGIERIAFTTT"
BASE COUNT          449 a         1033 c         1039 g          449 t
ORIGIN      
        1 atttcggacg atgcctgaga tcgcgatcgc cgggcggatc gcccggcgcg ccatgcgtga
       61 cggcaccggc gggcgggtgc gcgccgtgtt cgaccgcagc ttctacgtcg acctcgacgg
      121 acaatggatc tgccttggac cgcagacgct gggcgctgga cccctgaacg cgctctggca
      181 cgacggcggc gccgttcccc tgccgcgacg cggcgatccc gtgagcttcg gagcgggaac
      241 gctggtgatt gccgcgaccc cgttcgcgca gattcgactc ggtcccgaac cgccgcccgc
      301 cgttccgcgg ccctggacgg ccgccaccct cgcccacggc ttgcgccaac ttgagcgcgt
      361 ggctgagccg gctgctccgg gggagggatt ggggtccgtg atttccggac gcgtcggccg
      421 ctcgccctgt gcgctcgccg cgagggcgcc tgtggcgtac ctgaacgaac tcgtgctttc
      481 gcggtgtcga gagggctgcc tcccggattt cgatcccgcg aagctcgcgc ccctcgtcgg
      541 actcggcccg ggactgaccc cttcgggcga cgacttcctg ggcggggccc tcgtcgcact
      601 gacggcaatc gggttgctcg atcttcgcga cgcgatctgg acgggcctgc gaccgcacgc
      661 ggccgagggc acgaacgaca tcgcccgcgc gcatctcacg gcggcagccg agggcgagtg
      721 cgccgacgcc ctcgatcagg cccttggagc gctgctgagc ggcggcgacg aggtcgtatc
      781 ggccctccgc gcggttgcgg ctgtcgggca cacgtccggg tgggatgcgc tcgcgggcgt
      841 cgtggtcgtc cttcgcgccg cagcggccgg tcaggccagc gccgaggccg cgtagagcgc
      901 cctcacgccg cctcggcaag ctcctgctct ttggctgccg gtgccgcctt ggcgcgcggc
      961 ttgcgcgggc gaggctgctt cttcggcgcg ctctgcggcg ccggagatgc ggcaggcctc
     1021 cagaacgctt gccagctcca cgctccggga ccgctcacga cgtagaaggc cagtgccgcg
     1081 agcatcgccg cgttgccgag gaaaaccgcc tgctccaggg cccgggcgct gcctggcacg
     1141 tcccagaagc ggtgcagcgt cccggtggtg atcacgagag aggacgccag cgccgatacg
     1201 gtcagtcggg gcgcaaggcc cagcgcaagc gcgagcgcgc cgaagagctc ggcgatggca
     1261 caggcggtcg caacgccatg cgagaacggc atccccttca tccagagcga aagcgccagc
     1321 ccggagacat tcgacacgtg cgcgatcgcg ctcgggagca ggcacgcggc cattgcgagc
     1381 cgcgcaagca ggagcgtcca gtccctcacg tagattgtct ccttccgcca gaatcggtcg
     1441 ggcaccctga ttgggacagc agaccctaag cccgtattac cgggtcggtc gccggcgacg
     1501 cgcgctccgg cgccaaacgg ccccggtccc gctcgcttag atcatgtccc ggcgaggtcg
     1561 cgaaagctcg cgacgaaggc cggggcggca tcctcgatga cctcgagcga gtagccgcct
     1621 tcctggacga tgacggtcgg cagcctgagc ttgccccaca cttcgccgat gcgccgaaat
     1681 ccctccgtgg tcacggtaag cctggacagc ggatcggcct cgtgcgcatc ccagccggcc
     1741 gagagcacga gcgcgtccgc ttggaaacgc tcgacggcgg agcagagacg ctcgttcgcg
     1801 tcgatgaacg cgtcgtcgcc ggagccccag gccagcggga gattgagatt cgctccttcc
     1861 ccgtccccgg cgcctgtctc gtcggcatag cccgcaaagt gcgggtaata ggctgaaggg
     1921 tcggtgtgga ccgagccata gaacacgtcg cgccgtcgat agaagatcgc ctgcgtgccg
     1981 tcgccatggt gcgtgtcgaa gtcgatgatc gccaccttct ggtaggtgcg ccgcaggacc
     2041 tccgcggcaa tcgccgcatt gttgaagtag cagaagccgg aggcccggtc ggcgtaggcg
     2101 tggtggccgg gcggccggca tagcgagaag gcggcctgct cacctgcgct gactgcctgc
     2161 gctcccgcga tggccgtctg ggcggacgcg taggcggccc ggtaggtgcc ctccatcatc
     2221 gcgcacgaga gatcccccac ataccagccc gcctgcccga tgatgccggt cggccgcggc
     2281 gggccgcgtc gggcaagatc ggcgccggcg ccgagatagg gatgcacgtt cgggagcacc
     2341 tccggtccgt ggttcggcag ctccttgaag cgcgcgtagg caccctcgag aaaggtgacg
     2401 tagtgctcgt catgcacgct caggatcggc tcacgcccga agtcgtcagg ttcgacgcgg
     2461 tcgagtccga ccgccgcgag agcgtcgatc agggtgatgg cgcgcgaagg gttctcgaac
     2521 gggtccacga tccggccgtg caccatgtac tgcttcggct ggtgcgcgag ctgcgcctcg
     2581 gagaagaaga gcttcatgcg gcctccgcga tctgcggtca ggggagttcg attgcacacc
     2641 ctctcccgat ccgctcaact acgccaccct ccgggagggc acagatcagg cggagaccat
     2701 ggcgctcaag gacatcgtcg gcatcgatca cgcggtggtg ctggtccggg acctcgacca
     2761 gggcgcggcg gcgtggcggc gtctcggctt cacgatctcg ccgcgcggca cgcacagccc
     2821 gcagatgggc tcgggcaact acacgatcat gctcgggccg gactacatcg agctcctggg
     2881 catcatcgcc gagacgccgc tcaacgcggc gagccgcgcg ttcctcagcc ggcgcggaga
     2941 aggcatcgag cggatcgcct tcacgacgac
//
LOCUS       DASQWN010000593         6847 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_957454, whole genome shotgun sequence.
ACCESSION   DASQWN010000593 DASQWN010000000
VERSION     DASQWN010000593.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 6847)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6847)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6847
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_957454"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..894
                     /locus_tag="VE686_11070"
     CDS             <1..894
                     /locus_tag="VE686_11070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018388797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tripartite tricarboxylate transporter permease"
                     /protein_id="HYY85024.1"
                     /translation="VVIGLFGIGELLLTMEEGLKFEGVKAKVSLRGVLAALKMMPRYW
                     VALLRASFIGVWMGITPGGPTAASFMSYGIAKRFSRRRDKFGTGEPEGVIAPETADHG
                     AGTAAMLPMLALGIPGSATAAVMMGGLMIWGLNPGPMLFIERPDFVWGLIASMYLGNV
                     VAVILVLTTVPLFAAILRIPFAIIGPLIVVVCFIGAWTVAASVPDLWLALIFGVVGYV
                     FKKLDYPIAPLVLALVLGDKAEDAFRQSMLMSQGSLSIFVSNPLVATITTIALLLITW
                     PLWAMLFGFARNRFAPAEIGE"
     gene            923..2176
                     /locus_tag="VE686_11075"
     CDS             923..2176
                     /locus_tag="VE686_11075"
                     /EC_number="2.8.3.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009210685.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CoA transferase"
                     /protein_id="HYY85025.1"
                     /translation="MAAKTVAKNYGPLAGVKVVELAHIMAGPICGLMLADMGATVIKV
                     EKIPGGDDTRRSIPPTIDGESAAFMMMNRNKRGIALDLKSEDGKEVLRRLLADADILI
                     ENFRPGTLARLGFGYEALRETNPGLVYCALSGFGRTGPYAERAGFDLIAQGMSGIMSA
                     TGEGPGRPPVKTGPPITDITAGILAAMGVLAAYTHRLKTGEGQMIDTSLFEAGIVQTY
                     WQSAIALATGVAPGPMGSGHPLSAPYQAFATADGWITIGAANQGNWVRLLSVLDAPEI
                     AADPRFVDNDHRMRHLADLEAALTPHFRKRTSADWLERLETAGVPAGPVLDVNEMHAD
                     PQTLARKMVVEVQHTKVGAVKTLGLPVKFSKTPGEVTTGAPVYGEHTREVLREHGFSA
                     EDIERLAAGGAVIIAEAAHALRRPS"
     gene            2173..2973
                     /locus_tag="VE686_11080"
     CDS             2173..2973
                     /locus_tag="VE686_11080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012045638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-CoA hydratase/isomerase family protein"
                     /protein_id="HYY85026.1"
                     /translation="MNDNATTPDEDLLYEVRDGVARITFNRPQARNALTFAMYERMAQ
                     ICEAANADKSIKAVIVSGAGGKAFASGTDISQFRAFKTAQDGLDYEGRIDRVLGTLES
                     CRVPTIAAIDGFCTGGGLGIAMCCDLRIATKPSKFGIPIARTLGNMLSTANLSRLAAL
                     IGPARVKDLLFTARLAGAEESHRIGLVTEVVEDGAALTARADEIAALISGHAPLTLQA
                     VKEGLRRLQPRLSREEGEDLITLCYTSNDFREGMEAFLNKRQPKWTGT"
     gene            3030..3917
                     /locus_tag="VE686_11085"
     CDS             3030..3917
                     /locus_tag="VE686_11085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009490831.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016829 - lyase activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CoA ester lyase"
                     /protein_id="HYY85027.1"
                     /translation="MIPIRPRRSVLYMPGSNARAMEKARTLPADAIILDLEDAVAPDV
                     KDTARTQVCTAVRDGGYGGREVIIRVNGLDTPWGEADLAAAAQAGPDAILVPKVSSPE
                     TLAVVGSRLRRLGTPQRTRVWAMIETPLAILNAAAIASAAADVDSRLACFVMGTNDLA
                     KETRAQLVPGRAPMLPWLMTALAAARAYDLDVLDGVYNGLSDEAGLREECAQGRELGF
                     DGKTLIHPNQIAPANEAFAPDADEVARSRAIIAAFDKPENAGRGAISLDGRMVERMHA
                     DMARRVVALADAIEARATR"
     gene            complement(3907..4107)
                     /locus_tag="VE686_11090"
     CDS             complement(3907..4107)
                     /locus_tag="VE686_11090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012330467.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Trm112 family protein"
                     /protein_id="HYY85028.1"
                     /translation="MTESTPVEATRIDPKLLEILVCPLTKGRLEYDAERQELISPQAR
                     LAYPIRDGIPIMLPEEARQLSE"
     gene            complement(4119..4790)
                     /locus_tag="VE686_11095"
     CDS             complement(4119..4790)
                     /locus_tag="VE686_11095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015931653.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LON peptidase substrate-binding
                     domain-containing protein"
                     /protein_id="HYY85029.1"
                     /translation="MPMNAVYNGPQDLPDVIPVFPLPGALLLPRGQMPLNIFEPRYLA
                     MVDEALRTNRIVGMVQPDLERGGTPLVPKLYPVGCAGRITGFAETGDGRYLITLTGIA
                     RFRLAEEVPNTAPYRLCRVAFEPYRGDFEAGAGEAAVDREGVLKALRDFAQATGLKID
                     WKSIDEAGNETLVNALCMMSPFGVGEKQAMLEAPDLKARADVLVAATQIELARKGESP
                     QPTLQ"
     gene            complement(4819..5715)
                     /gene="trxA"
                     /locus_tag="VE686_11100"
     CDS             complement(4819..5715)
                     /gene="trxA"
                     /locus_tag="VE686_11100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009490834.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0015036 - disulfide oxidoreductase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin"
                     /protein_id="HYY85030.1"
                     /translation="MLAENTAAQDGLIKDTTTAGFRQDVIAESAKQPVLVDFWAPWCG
                     PCKQLTPVIEKAVKAAGGKVKLVKMNIDEHPQIPGQLGIQSIPAVIAFTKGQPVDGFM
                     GALPESQVKGFIERLVGPVGPSASEDMLAEAAGLAAQGDAAGAAELYAAVLAQEPDNV
                     AAIAALAKLHLDLGDLDGAKRFLTMAPKGKENDPAIAGARAAIELAEQAASLGDVGEL
                     MRRVEADPRDHQARFDLAVALNARNKREEAVDALLEIVRRDRTWNEDGARKQLVQFFE
                     AWGPMDPATVAGRKRLSSVLFA"
     gene            complement(5749..6291)
                     /locus_tag="VE686_11105"
     CDS             complement(5749..6291)
                     /locus_tag="VE686_11105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018259720.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prolyl-tRNA synthetase associated
                     domain-containing protein"
                     /protein_id="HYY85031.1"
                     /translation="MPHATPADLFRLLADLGIENRTVEHEAVFTVEQSRAIKDDIAGG
                     HSKNLFVKDKKGRLFLIVAQADTRIDLKRVHDAIGASGRVSFGSAELLREVLGVEPGS
                     VTPFAVMNDRARRVAVVLDLRLMDNELVNFHPLVNTATTTVSRQGLVAFLRATGHDPL
                     TLALPEPVVADCGSGEAIPS"
     gene            6441..6515
                     /locus_tag="VE686_11110"
     tRNA            6441..6515
                     /locus_tag="VE686_11110"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:6473..6475,aa:Gly,seq:gcc)
BASE COUNT         1026 a         2469 c         2295 g         1057 t
ORIGIN      
        1 gtcgtcatcg gcctgttcgg catcggcgag ctcctcctga ccatggagga gggcctgaaa
       61 ttcgagggcg tgaaggcgaa ggtgagcctg cgcggcgtgc tcgccgccct caagatgatg
      121 ccgcgctact gggtcgcgct cctgcgcgcc agcttcatcg gggtctggat gggaatcacc
      181 ccgggaggcc cgacggcggc gtcgttcatg agctacggca tcgccaagcg cttttcgcgc
      241 cggcgcgaca agttcggcac cggcgagccc gagggcgtga tcgcccccga gaccgccgac
      301 cacggcgccg gcacggccgc catgctgccg atgctggcgc tcggcatccc gggctccgcc
      361 acggccgccg tgatgatggg cgggctcatg atctggggcc tcaacccggg cccgatgctg
      421 ttcatcgagc gccccgactt cgtctggggc ctcatcgcct ccatgtacct cggcaacgtc
      481 gtcgcggtga tcctcgtcct cacgacggtg cccctgttcg ccgccatcct gcgcatccca
      541 ttcgccatca tcggcccgct gatcgtcgtc gtgtgcttca tcggcgcctg gacggtcgcg
      601 gcctcggtgc cggacctgtg gctcgcgctg atcttcggcg tcgtcggcta cgtcttcaag
      661 aagctcgact acccgatcgc ccctctggtg ctggccctcg tcctcggcga caaggccgag
      721 gatgcgttcc gccagtccat gctgatgtcg cagggcagcc tctcgatatt cgtctcgaac
      781 ccgctggtcg cgacgatcac cacgatcgcg ctcctgctca tcacctggcc gctctgggcc
      841 atgctgttcg gctttgcgcg caaccgcttc gcgcccgccg agatcggcga gtaggactcc
      901 cacccgagga cacgaaagac gaatggccgc caagaccgtt gcgaagaact atggcccgct
      961 cgcgggcgtg aaggtggtcg agctggcgca catcatggcc ggcccgatct gcggcctgat
     1021 gctcgccgac atgggcgcca cggtcatcaa ggtcgagaag atccccggcg gcgacgacac
     1081 gcgccgctcg atcccgccga ccatcgacgg cgagagcgcc gccttcatga tgatgaaccg
     1141 caacaagcgc ggcatcgccc tcgacctcaa gagcgaggac ggcaaggagg tcctgcgccg
     1201 gctcctcgcc gacgccgaca tcctgatcga gaacttccgg cccggcaccc ttgcgcgcct
     1261 cggcttcggc tacgaggccc tgcgggagac gaacccgggc ctcgtctact gcgccctctc
     1321 gggcttcgga cgcaccggcc cctacgccga gcgggccggc ttcgacctca tcgcccaggg
     1381 catgagcggc atcatgtcgg cgacgggcga gggtccgggc cgcccccccg tcaagaccgg
     1441 cccgccgatc accgacatca cggccggcat cctcgcggcc atgggcgtgc tcgccgccta
     1501 cacccaccgc ctgaagaccg gcgaggggca gatgatcgac acctctctgt tcgaggccgg
     1561 catcgtccag acctactggc aatccgccat cgcgctcgcg accggcgttg cgcccggtcc
     1621 gatgggctcg ggccacccct tgagcgcgcc ctaccaggcc ttcgcgaccg ccgacggctg
     1681 gatcaccatc ggcgccgcca accagggcaa ctgggtccgg ctgctgagcg tgctcgacgc
     1741 tcccgagatc gccgccgacc cgcgcttcgt cgacaacgac catcgcatgc ggcacctcgc
     1801 cgacctcgag gcggcgctga cgccgcattt ccgcaagcgg acctccgccg actggctcga
     1861 gcgcctcgag accgccggcg tgccggccgg tccggtgctc gacgtcaacg agatgcacgc
     1921 cgacccgcag acccttgccc gcaagatggt ggtcgaggtg cagcacacga aagtcggggc
     1981 cgtgaagacg ctgggcctgc ccgtcaagtt ctcgaagacc cccggcgagg tgacgaccgg
     2041 cgccccggtc tatggcgagc acacccgcga ggtcttgcgc gagcatggct tttcggctga
     2101 ggacatcgag cggctcgccg ccggcggcgc ggtgatcatc gccgaagccg cgcacgcctt
     2161 gaggaggcct tcatgaacga caatgccacg acccccgacg aggacctcct ctacgaggtg
     2221 cgcgacggcg tcgcccgcat caccttcaac cggccgcagg cccgcaacgc tctcaccttc
     2281 gccatgtacg agcgcatggc ccagatctgc gaggccgcca acgccgacaa gtccatcaag
     2341 gcggtgatcg tcagcggggc cggcggcaag gccttcgcgt ccggcaccga catctcgcag
     2401 ttccgcgcct tcaagacggc gcaggacggc ctcgactacg agggccgcat cgaccgcgtg
     2461 ctcggcacgc tggagagctg ccgcgtgccc accatcgcgg ccatcgacgg cttctgcacc
     2521 ggcggcgggc tcggcatcgc catgtgctgc gacctgcgca tcgcgacgaa gccctcgaag
     2581 ttcggcatcc cgatcgcccg caccctcggc aacatgctct cgaccgcgaa cctctcccgc
     2641 cttgccgccc tcatcggtcc ggcccgggtg aaggatctcc tgttcacggc gcgcctcgcc
     2701 ggcgccgagg aaagccaccg gatcggcctc gtcacggagg tcgtcgagga cggcgccgcc
     2761 ctcacggccc gcgccgatga gatcgcggcc ctcatctccg gccacgctcc gctgacgctg
     2821 caggccgtga aggagggcct gcgccgcctc cagccgcggc tgtcgcgcga agagggcgag
     2881 gacctcatca cgctctgcta cacgtcgaac gacttccgcg agggcatgga ggcgttcctc
     2941 aacaagcgcc agccgaagtg gacgggcacc tgaggctttc gcccgcggcg cggcggcgct
     3001 aggagagcct cttctcccgg aggccttcga tgatcccgat ccgcccgcgc cgcagcgtgc
     3061 tctacatgcc gggctccaac gcccgcgcga tggagaaggc gcgcaccctg cccgccgacg
     3121 ccatcatcct cgacctcgag gacgcggtcg cgccggacgt gaaggacacg gcacgcacgc
     3181 aggtctgcac cgccgtgcgc gacggcggct acggtggacg cgaggtgatc atccgcgtca
     3241 acggcctcga cacgccatgg ggcgaggccg atctcgccgc tgccgcgcag gcagggcccg
     3301 acgccatcct cgtgccgaag gtgtcgtcgc ccgagacgct ggccgtcgtc ggcagccgcc
     3361 tgcggcgcct cggcacgccc cagcgcacgc gcgtgtgggc catgatcgag acgccgcttg
     3421 ccatcctcaa cgccgccgcc atcgccagcg ccgcggccga cgtcgactcg cggcttgcct
     3481 gcttcgtcat gggcacgaac gacctcgcca aggagacccg cgcccagctc gtccccgggc
     3541 gcgcgccgat gctgccctgg ctcatgacgg cgcttgccgc cgcgcgcgcc tacgatctcg
     3601 acgtcctcga cggggtctac aacggcctct cggacgaggc gggcctgcgc gaagaatgcg
     3661 cccaagggcg cgagctcggc ttcgacggca agacgctgat ccacccgaac cagatcgccc
     3721 cggccaacga ggccttcgcg cccgacgccg acgaggtcgc gcgctcgcgc gccatcatcg
     3781 cggccttcga caagcccgaa aacgccggcc ggggcgccat ctcgctcgac ggccgcatgg
     3841 tcgagcgcat gcacgccgac atggcccgcc gcgtcgtcgc cctcgcggac gcgatcgagg
     3901 cgcgcgctac tcgctgagct ggcgcgcctc ttcggggagc atgatcggga tgccgtcgcg
     3961 gatcgggtag gcgagccgcg cctgcgggct gatcagctcc tggcgctcgg catcgtattc
     4021 gagacgcccc ttggtcaggg gacagacgag aatctcgaga agcttggggt cgatgcgcgt
     4081 ggcctcgacg ggcgtgctct cggtcatcgg cgtttccctt actgcagcgt cggttgcggg
     4141 ctctcgccct tgcgggcgag ctcgatctgg gtcgcggcca cgaggacgtc ggcccgggct
     4201 ttgaggtccg gcgcctcgag catggcctgc ttctcgccga cgccgaacgg gctcatcatg
     4261 cacagggcgt tgacgagggt ctcgttgccg gcctcgtcga tgctcttcca gtcgatcttg
     4321 agaccggtcg cctgcgcgaa gtcgcgcaag gccttcagca cgccctcgcg gtcgacggcc
     4381 gcctcaccgg cgccggcttc gaagtcgccg cgataaggct cgaacgccac ccggcacagc
     4441 ctgtacggcg ccgtgttcgg cacctcctcg gcgaggcgga agcgcgcaat cccggtgagc
     4501 gtgatcagat agcggccgtc gccagtctcg gcgaagccgg tgatgcgccc ggcgcagccg
     4561 acggggtaca gcttcggcac gagcggcgtg ccgccgcgct cgagatcggg ctggaccatg
     4621 ccgacgatgc ggttcgtgcg cagggcctcg tccaccatgg caaggtagcg cggctcgaag
     4681 atgttgagcg gcatctgccc gcgcggcagc agcagcgctc cgggcagcgg gaacaccggg
     4741 atgacgtcgg ggagatcctg cgggccgttg tagacggcgt tcatcggcat gatcggctcc
     4801 ctgcggccgc tgcccgcgtc aggcgaacag gaccgacgac aggcgcttgc gtcccgcgac
     4861 cgtcgccgga tccatcggcc cccaggcttc gaagaactgg accagctgct tgcgggcgcc
     4921 gtcctcgttc caggtgcggt cgcggcggac gatctcgagc agcgcgtcga ccgcctcctc
     4981 gcgcttgttg cgggcgttca gggcgaccgc gaggtcgaag cgggcctggt ggtcgcgcgg
     5041 atcggcttcc acccggcgca tgagctcacc gacgtcgccg agggacgccg cctgctcggc
     5101 aagctcgatg gcggcgcggg cgcccgcgat ggcgggatcg ttctccttgc ccttgggagc
     5161 catggtcagg aagcgcttgg cgccgtcgag atcgccgaga tcgagatgga gcttcgcaag
     5221 cgccgcgatg gccgccacgt tgtcgggctc ctgggcgagg accgcggcgt agagctctgc
     5281 cgctcccgcg gcatcgcctt gggccgcgag cccggctgcc tcggccagca tgtcctctga
     5341 cgccgacggg cccacggggc cgacgagccg ctcgatgaac cccttcacct ggctctcggg
     5401 cagcgcgccc atgaagccgt ccaccggctg gcccttggtg aaggcgatca ccgccgggat
     5461 cgactggatg ccgagctgcc cgggaatctg cgggtgctcg tcgatgttca tcttgacgag
     5521 cttgaccttg cctcccgccg ccttgacggc cttctcgatg acgggcgtga gctgcttgca
     5581 cgggccgcac caaggggccc aaaagtcgac gagcacgggc tgcttcgccg actcggcgat
     5641 cacgtcctgg cggaagccgg cggtcgtcgt gtccttgatg aggccgtctt gcgcggcagt
     5701 gttttcagcg agcatcgttc cctcgaaacg ggcaaatgtc ggtcaggctc aagatgggat
     5761 ggcctccccg ctcccgcaat cggcaacgac cggctcggga agcgcgagcg tgagggggtc
     5821 gtggccggtc gcgcgcagga acgcaaccag gccctggcgc gagacggtgg tcgtggcggt
     5881 gttcaccagc gggtggaagt tgacgagctc gttgtccatg agccgcaagt cgaggaccac
     5941 ggcgacgcgg cgcgcccgat cgttcatgac ggcaaacggc gtcaccgacc cgggttccac
     6001 gccgaggacc tcgcgcagga gctcggcgga gccgaacgaa acccggccgg aggcgccgat
     6061 ggcgtcgtgc acgcgcttca ggtcgatccg cgtgtctgcc tgcgcgacga tgaggaagag
     6121 ccgccccttc ttgtccttga cgaacaggtt cttggagtgc ccgccggcga tatcgtcctt
     6181 gatggcgcgc gattgctcga cggtgaacac cgcctcgtgc tcgacggtgc ggttctcgat
     6241 cccgaggtcg gcaaggaggc ggaacaggtc ggcgggagta gcgtggggca aacggacgct
     6301 cctggacggg cgcttgtagc ggccccctcg cgaccgctca accgcggtcc gggcccgaag
     6361 gacgccgcag ccctcttgca aaccccgccc ggatggggca catggggcgc ctcgcaacgg
     6421 tgccagccgc accgcggagc gcgggtgtag ctcaggggta gagcacaacc ttgccaaggt
     6481 tggggtcgag ggttcgaatc ccttcgcccg ctccaatttc cagactttcg gatatggatc
     6541 tgcaaaagcc gccttcgggc ggttttttgt tttgcccttc gctctgttgg cggcgccttc
     6601 cgcttctcag gccattggct cctcgcatga caggctttgg cctcgcttcg ccggcgcttc
     6661 aagctacaat cagggcaaga cccggaggaa tcacatggcc gacgcgcggc agcttgaggt
     6721 gttgaaggag cttgagcgca aggtgctctg gctctccacc tggaccatcc acaacgccaa
     6781 ccacctgcgc cccaacgggg acgggatgaa gatcggcggg caccaggcgt cctcggcctc
     6841 cctctcg
//
LOCUS       DASQWN010000594         3343 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_461464, whole genome shotgun sequence.
ACCESSION   DASQWN010000594 DASQWN010000000
VERSION     DASQWN010000594.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 3343)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3343)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3343
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_461464"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1135
                     /locus_tag="VE686_11115"
     CDS             <1..1135
                     /locus_tag="VE686_11115"
                     /inference="COORDINATES: protein motif:HMM:TIGR00229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="PAS domain S-box protein"
                     /protein_id="HYY85032.1"
                     /translation="VDDLSTGLAEVDEVARAISAASRSLRQREAALRASEGRLRATQD
                     NAAVGIVELDREGRIIYANEAECHLVGYTRDELVGRNFADFTHPDHQEDIALFRELVS
                     GTRDSYTIEKRYFRKDGSVAWARLSSKAVRDPAGEFLYTVRVVEDITERKQADARQKL
                     LVDELNHRVKNTLTTVQSIAWQTFRQNLPPEVARERFEARLLALSRTHNLLNDSKWEG
                     AALGNILIEELQPYGAGERKRFGLQGPYIHLAPRLAVVLGMAFHELTTNAAKYGALSV
                     PTGSVHVTWRVFSPDEGGEPWIRIEWREEGGPPVTPPSRRGFGSRLVSSTVERELAGK
                     LEVRFDPEGLFCAIEVPRGRTLPFGAAKAEEAPEMRAGGATGA"
     gene            complement(1132..2577)
                     /locus_tag="VE686_11120"
     CDS             complement(1132..2577)
                     /locus_tag="VE686_11120"
                     /EC_number="3.2.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009452217.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008714 - AMP nucleosidase activity
                     [Evidence IEA];
                     GO_process: GO:0009116 - nucleoside metabolic process
                     [Evidence IEA];
                     GO_process: GO:0044209 - AMP salvage [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AMP nucleosidase"
                     /protein_id="HYY85033.1"
                     /translation="MPTHPASDVVVCKSAPEAVARINRLYADGIAAIRDAFARGRRGE
                     PIGAVDAYYPYVGIDVGLAELHVDARLSYGAALEPGSYGTTLTRPDLFAAYFEEQIGL
                     VMGHHGVPVLVGRSERPIPLPFVIEEAVTDITETEVRALQEHFALPDLSATDDGIANG
                     DRLGGPNDVRPLSLFTAERVDYSLARLHHYTGTSPEHFQSFVLLTNYQRYVDEFIAFG
                     HGAIGRDGYDAFVEPGNVVASAPKASGGPSSPGHLPQMPAYHLKREAGDGVTLINIGV
                     GPSNAKTITDHLAVLRPHCWLMLGHCAGLRRSQLLGDYVLAHGYVRDDHVLDQDLPPW
                     VPVPPIAEVQVALQEATALVTGLRGQDLKTRLRTGTVVTTDNRNWELRFDELFGRLNM
                     ARGIAVDMESATIAANGFRFRVPYGTLLCVSDKPLHGELKLRGMANAFYRERISQHLQ
                     VGIATVRLLREQGVDRLHSRKLRGFDEPAFR"
     gene            complement(2670..>3343)
                     /locus_tag="VE686_11125"
     CDS             complement(2670..>3343)
                     /locus_tag="VE686_11125"
                     /EC_number="2.3.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012592011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016746 - acyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0071972 - peptidoglycan L,D-transpeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0018104 - peptidoglycan-protein
                     cross-linking [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="L,D-transpeptidase"
                     /protein_id="HYY85034.1"
                     /translation="SSAVAFALGGCVSGAPTAGAPAARSVAAAAEPVAFEPSGAYAQM
                     YGPVGDRFPIPAAPLSRINPAFLRAPVAYASAEAPGTIVIEPRARYLYYVLGSGRAMR
                     YGVGVGREGFAWSGSATINSKQEWPDWYPPKEMVQRQPELRKSLTTLQGGLGMPGGPG
                     NPLGARAMYLWQNNKDTLYRIHGTFEPWTIGTNVSSGCIRMINQDVIDLYGRAAVGAK
                     VVVLA"
BASE COUNT          507 a         1136 c         1223 g          477 t
ORIGIN      
        1 ggtcgacgat ctgtcgacag ggcttgccga ggtggacgag gtggcgcgcg cgatctcggc
       61 ggcgtcgcgc agcctgcgcc agcgcgaggc ggcgctgcgg gcgagcgagg ggcgcctgcg
      121 cgcgacccag gacaacgcgg ccgtcgggat cgtcgagctc gatcgggagg gccgcatcat
      181 ctacgccaac gaggccgagt gccatctcgt cggctacacc cgcgacgagc tcgtcggacg
      241 caacttcgcc gacttcaccc atcccgacca ccaggaggac atcgcgctgt tccgcgagct
      301 cgtctccggg acgcgcgact cctacaccat cgagaagcgc tacttccgca aggacgggtc
      361 cgtcgcctgg gcgcggctgt cgagcaaggc cgtgcgcgac cctgcgggcg agttcctcta
      421 cacggtgcgc gtcgtcgagg acatcaccga acgcaagcag gccgacgcgc gccagaagct
      481 tctcgtcgac gagctcaatc accgcgtcaa gaacacgctc acgaccgtcc agtcgatcgc
      541 ctggcaaacc ttccgccaga acctgccgcc cgaggtcgcg cgcgagcgct tcgaggcgcg
      601 gctgctggcg ctctcgcgca cgcacaacct gctcaacgac tcgaagtggg aaggcgccgc
      661 gctcggcaac atcctcattg aggagttgca gccctacggc gctggcgagc gcaagcgctt
      721 cggcctgcag ggcccctaca tccaccttgc accgaggctc gccgtcgtgc tcggcatggc
      781 gttccacgag ctgacgacca acgcggcgaa gtacggcgcg ctctcggtgc ccaccggctc
      841 ggtccatgtg acctggcgcg tgttctcgcc cgacgagggc ggcgagccct ggatcaggat
      901 cgagtggcgc gaggagggcg gcccgcccgt cacgccgccc tcccgtcgcg gcttcggctc
      961 acgcctcgtc agcagcacgg tcgagcgcga gctcgcaggc aagctcgagg tgcgcttcga
     1021 tccggagggc ctgttctgcg ccatcgaggt gccccgcggc cgcaccctcc ccttcggcgc
     1081 cgccaaggcc gaggaagcgc ccgagatgcg cgccggcggc gcaaccgggg cctagcggaa
     1141 cgcgggctcg tcgaagccgc gcagcttgcg cgagtgcagg cggtctacgc cctgctcgcg
     1201 caggagcctg accgtcgcga tgccgacctg cagatgctgg ctgatgcgct cgcggtagaa
     1261 cgcgttcgcc atgccgcgca gcttgagctc cccgtgcagg ggcttgtcgg agacgcagag
     1321 cagggtgccg tagggcacgc ggaagcggaa gccgttggcg gcgatggtag cggactccat
     1381 gtcgacggcg atgccgcgcg ccatgttgag gcggccgaag agctcgtcga accgcagctc
     1441 ccaattccgg ttgtcggtcg tgacaacggt gccggtgcgc aggcgggtct tcagatcctg
     1501 gccgcgcagg cccgtcacga gggccgtcgc ttcctggagc gcgacctgca cctcggcgat
     1561 cggcggcacc ggcacccagg gcggcaggtc ctggtcgagg acgtggtcgt cgcgcacgta
     1621 gccgtgggcg aggacgtagt cgccaagcag ctggctccgc cgcaggcccg cgcagtggcc
     1681 gagcatgagc cagcaatgcg ggcgcaggac cgcgaggtgg tcggtgatgg tcttggcgtt
     1741 cgaggggccg acgccgatgt tgatgagggt gacgccgtcg ccggcctcgc gcttgaggtg
     1801 gtaggctggc atctgcggca ggtggcccgg cgacgagggc ccgcccgacg ccttcggggc
     1861 ggaagcgacg acgtttcccg gctccacgaa ggcgtcgtag ccgtcgcgcc cgatcgcgcc
     1921 gtggccgaag gcgatgaact cgtcgacgta gcgctggtag ttggtcagga gcacgaagct
     1981 ctggaagtgc tccggcgagg tcccggtgta atggtgcagg cgcgcgagcg aatagtcgac
     2041 gcgctcggcc gtgaacaggg acaaaggccg gacgtcgttc ggcccgccga ggcggtcgcc
     2101 attggcgatg ccgtcgtcgg tggcgctgag gtccgggagc gcgaaatgct cctggagagc
     2161 gcgcacttcg gtctcggtga tgtccgtcac cgcctcctcg atgacgaagg ggagcggaat
     2221 cgggcgttcg ctcctgccga cgagcacggg gacgccgtgg tggcccatga cgaggccgat
     2281 ctgctcctcg aagtacgcgg cgaagaggtc cgggcgggtg agcgtggtgc cgtagctgcc
     2341 gggctcgagc gcggcgccgt acgacagccg ggcgtcgaca tggagttcgg caagcccgac
     2401 gtcgatgccg acatacggat agtacgcgtc gacagcgccg atgggctcgc cgcgccggcc
     2461 gcgcgcgaac gcgtcgcgga tcgccgcgat accgtcagca tagaggcgat tgatgcgcgc
     2521 gaccgcctcc ggggcgctct tgcacaccac gacgtcgctc gccggatggg tcggcacggg
     2581 acttcggtcc tcctcgcttc aagccgcgtc accccgtcaa tgacgcagct ccgggtccgg
     2641 ttgcgcgagg cgaccgagcc cgggacgcct caggcgagga ccaccacctt ggcgccgacc
     2701 gccgcccgtc cgtagaggtc gatgacgtcc tggttgatca tccggatgca gccggacgac
     2761 acgttggtgc cgatggtcca cggctcgaag gtgccgtgga tgcggtagag cgtgtccttg
     2821 ttgttctgcc acaggtacat cgcccgcgcg ccgagaggat tgccggggcc gcccggcatg
     2881 ccgagcccgc cctgcagcgt cgtcaggctc ttgcgaagct cgggctggcg ctggaccatc
     2941 tccttcggcg gataccagtc gggccattcc tgcttgctgt tgatcgtggc gctgcccgac
     3001 caggcgaagc cctcgcgtcc gacgccgacg ccgtaccgca tcgcgcgacc gctcccgagg
     3061 acgtagtaga ggtagcgcgc gcgcggctcg atgacgatgg tgccaggcgc ctcggcgctc
     3121 gcgtaggcga cgggcgcgcg caggaacgcg ggattgatcc gggacagagg ggcggcgggg
     3181 atcggaaagc ggtcgccgac gggcccgtac atctgcgcat aggcaccgga cggctcgaag
     3241 gcgaccggct ccgcggcggc ggcgacggag cgcgccgcgg gtgcacccgc ggtcggcgca
     3301 ccgctgacgc agccgccgag cgcgaaggcg accgcgctcg aaa
//
LOCUS       DASQWN010000595         2232 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_155741, whole genome shotgun sequence.
ACCESSION   DASQWN010000595 DASQWN010000000
VERSION     DASQWN010000595.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2232)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2232)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2232
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_155741"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            197..948
                     /locus_tag="VE686_11130"
     CDS             join(197..518,518..948)
                     /locus_tag="VE686_11130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076611079.1"
                     /ribosomal_slippage
                     /note="programmed frameshift; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IS5 family transposase"
                     /protein_id="HYY85035.1"
                     /translation="MERFVLTDAQWARMEPHCLGKPGDPGRSGKDNRRFVEGVLWIVR
                     TGAPWRDLPAFFGKWNSVYVRFRDWVKADVFARLFEACSDEPDREYAMVDATIVKVHR
                     HGQGAKGGTPSQAIGRSKGGMTTKILALTDTLGNLVRFVLLPGHRFDTVGIAPLISGV
                     AFGGLIGDKAFDSNALIAELDERGAKVVISQHPRRASPLPLDAEMYQWRHLIENFFCK
                     LKEFKRIAMRSDKTDQSFSAMIHLAAAVINSR"
     gene            complement(1009..2232)
                     /locus_tag="VE686_11135"
                     /pseudo
     CDS             complement(1009..2232)
                     /locus_tag="VE686_11135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076612169.1"
                     /note="frameshifted; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /pseudo
                     /codon_start=2
                     /transl_table=11
                     /product="IS3 family transposase"
BASE COUNT          345 a          768 c          754 g          365 t
ORIGIN      
        1 gccctccgtc tgtcggggaa cccagcgcag gaattacact gcatccttca tcacctttga
       61 ggtgaaacgc tgcctgattg ttagccttgg gcgtctgcgg tgatgatctc taggaggtgg
      121 tgccgtgcac gccgtagact aaggcctgtt gaggatcggg gtttcagggc gggcgtggat
      181 gtgctcgaag cgtgggatgg aacgcttcgt gttgaccgac gcccaatggg cgaggatgga
      241 accgcattgc ctaggcaagc cgggtgaccc tggacgtagc gggaaggaca atcggcggtt
      301 cgtggagggg gtcctttgga tcgtccgtac gggcgcaccc tggcgcgacc ttccagcctt
      361 cttcggcaag tggaactcgg tctatgtccg gttccgcgac tgggtgaagg ccgacgtgtt
      421 cgcccgactg ttcgaggcct gctcggacga gccggacagg gagtacgcga tggtcgacgc
      481 caccatcgtc aaggttcatc gccatggcca gggcgcaaag gggggactcc gagccaggcc
      541 atcggccgct ccaagggcgg catgaccacc aagatcctcg ccctcaccga cacgctcggc
      601 aatctggtgc gcttcgtcct cttgccgggg caccggttcg acacggtggg catcgcgccg
      661 ctgatctcgg gtgtcgcgtt cggcggcctg atcggcgaca aggccttcga cagcaacgcc
      721 ctcatcgccg agctggacga acgcggggcc aaggtcgtga tctcgcagca tccgaggcgc
      781 gcctcgccct tgccgcttga cgccgagatg taccaatggc gccatctcat cgagaacttc
      841 ttctgcaagc tcaaggagtt caagcgcatc gccatgcgca gcgacaagac cgaccagagc
      901 ttctcggcca tgatccatct cgccgctgcc gtcatcaact cgcgatgaac ctcaacaggc
      961 cctagtgcag gttgtaccgg cccacggtcg tgagacaccg atatgcgctc aggcagccat
     1021 cggcaccttg tcgagctggg cagcacggac ctgagccggc gtcctgtagc cgtgccgctc
     1081 gacgatccag ccgtggttgt aggtctcccg gaaccgctgc agcgccgacc gcagctcctc
     1141 gaccgtctcg aagcgccgca cccacaacag gttctccttc aaggtgcgga tgaaccgctc
     1201 ggcgcagccg ttgccctcgg gctcccggac gaaggccggc gagctctcga ggccgaggaa
     1261 gcggatctcg gcctggaagt cgtggctgac gtactggcta ccgtggtcat ggcggagcct
     1321 cagcccggcg gcgacgccct tgccgaagcc gccatggcag cgtcggacgg cctgcttgac
     1381 cggctccagg gcctcaaagc ggttcgcgtc gcgggaagcg tggataccca ggcactcggc
     1441 cgagccgtgg tcgacggcga tgaacaccgc cgtctggccc tcgccggtca tcaccgcggt
     1501 catgtcggtg ccccacatga gatcgacccg gtcggtcgtg atcatgccgt cgtgcgcctt
     1561 cgggccatgg ggccggccgg tgcgttgatg ggccagcagg ccgtgctcgc gcgtgagccg
     1621 caggacgcgg cgacggctgg tgcggatgcc cgcgaagcgt agccgcgccc agagcttgcg
     1681 atggccctcg ccatggaagg ggctatcggt caggagcttc ctgatcgcct cgaccagggc
     1741 ctcgtccgcc atcgcgccga ccggtccggg ccgcctaggc ggagtgtcgt cggatcggca
     1801 gcggtggcgg tagacggtcg cccgcgaggc gccccagacg cgcgccaccc gctgcaagcc
     1861 ataggcccgg tccgtggagg gcgagacccg gcggctcatc gcctcgacct ccggcgggcc
     1921 aaagggcgat gcgcctccag gtgcccgatc ttggccccga gcagctcgtt cgccatcgtc
     1981 agctcgccca ctttctcctt caggcgcccg atctcggcat cccgggcatc cgccggccgg
     2041 ctcctcatcg aggtctcgcc ggcggccagg aacgcatcgc gccagccgct cagctcggcc
     2101 gcggtcacgc ccagcacgcg cgagaccagc tccaggtcct cgccccgaag caggcggagc
     2161 gcggcgtccc gccggcatcc gccgccgctg cccgggcgtg ggcccgactg caccggcgtg
     2221 gtgggcgcgc tc
//
LOCUS       DASQWN010000596         3435 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_858874, whole genome shotgun sequence.
ACCESSION   DASQWN010000596 DASQWN010000000
VERSION     DASQWN010000596.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 3435)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3435)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3435
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_858874"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..687)
                     /locus_tag="VE686_11140"
     CDS             complement(<1..687)
                     /locus_tag="VE686_11140"
                     /inference="COORDINATES: protein motif:HMM:NF037997.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0005436 - sodium:phosphate symporter
                     activity [Evidence IEA];
                     GO_function: GO:0015114 - phosphate ion transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0035435 - phosphate ion transmembrane
                     transport [Evidence IEA];
                     GO_process: GO:0044341 - sodium-dependent phosphate
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Na/Pi symporter"
                     /protein_id="HYY85036.1"
                     /translation="MTASLPGHTLLLNLLGGIALLLWATRMVKTGVLRAFGERFRRAI
                     GHATANPVWACLTGVGVATAVQSSSATGLIVVGFVERGLVTLTAALALMLGADIGSTL
                     VVQALSFNLGAFVPVLLIAGVAAFMLSGSPVVQQSGRIAIGLALMILSLGMVVGSSEA
                     LRQSPVLVLLLQRLADDPIMAVIVGALLAWGTHSSVATVLLIISLAGAGIVATPLAVA
                     LTLGANIGSGF"
     gene            complement(793..2976)
                     /gene="mdoH"
                     /locus_tag="VE686_11145"
     CDS             complement(793..2976)
                     /gene="mdoH"
                     /locus_tag="VE686_11145"
                     /EC_number="2.4.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009491625.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016758 - hexosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glucans biosynthesis glucosyltransferase MdoH"
                     /protein_id="HYY85037.1"
                     /translation="MALSLDAVAPAEVEERPAQAPEPAMPAESPLAMPTQHLWRWSPQ
                     EERAFVAPQLYRTPWAARTFVFGGAAALTAWGAYEMYEVVSVSRTTILQYLLLLLFTV
                     NFSWIALAFTSALLGLFALLGRPAALPPLPASLESRTAVVMPVYNEQTARTFAALQAI
                     RESIEATGLGARFDYFILSDSTDPNAWIAEERAFLALRERSGPDARIYYRHRSKNHHR
                     KAGNIADFVSRWGGAYENMLVLDADSLMTGDCIVRLAAAMEADPDAGIIQTLPLIINR
                     NTLFARAQQFAARVYGPVIATGLSVWTGKDGNYWGHNAIIRTRAFAAHAGLPDLRGKP
                     PLGGHIMSHDFVEAALIRRAGWTVYMLPDLGGSYEESPPSLIDLATRDRRWCQGNLQH
                     MRVIGARGLKLPTRQHFATGIMSYLASPFWLFQLIVGIALVLQTTYIRPEYFTKEVTL
                     FPVWPRFDPERALMLFGATMAILLAPKFFGLLLMLMRPEGRRACGGAIRLVVSAFIEI
                     VISALIAPILMLIQSGSVFQILLGRDTGWQPQRRDDGSIPLRDIVRRHRWHTLLGIVA
                     AVSALSIATSLALWMSPTLIGLILAIPLSWLSGQLGLGLALKRLKLLMTPEEAQPPAI
                     ATRANGLQEELARNGYDDQDGLVALCRDPSLREQHEAMLPPPAPRKRGEIDTDRALAQ
                     AKLVEADTLEDAVRWLKAKERIVVLHDRALLDVAARLKPAALAAE"
     gene            complement(2952..>3435)
                     /locus_tag="VE686_11150"
     CDS             complement(2952..>3435)
                     /locus_tag="VE686_11150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009491626.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0042597 - periplasmic space [Evidence
                     IEA];
                     GO_process: GO:0016051 - carbohydrate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="glucan biosynthesis protein"
                     /protein_id="HYY85038.1"
                     /translation="LWVEPLGEWGDGVVQLIEIPSDAEMNDNILAYWRPKGPLPAGSE
                     VALAFRQFWCWTMPERPPLAAVTATRVGKGSAGRRRRFSIDFAGEIPDAAAADLRPAL
                     TTAPGTIQAPRLWRYPERKTTRVTFELDPGSENACEMRLVLEAGGKPLSETWLYRWTP
                     "
BASE COUNT          558 a         1134 c         1261 g          482 t
ORIGIN      
        1 gaagccggag ccgatgttgg cgccgagcgt cagcgcgacc gcgagcgggg tcgcgacgat
       61 gcccgcgccg gcaagcgaga tgatgagcag caccgtcgcg acgctcgagt gggtgcccca
      121 ggcgagcagg gcgccgacga tgacggccat gatggggtcg tcggcgagcc gctggagcag
      181 gagcacgagc acggggctct gccgcagcgc ctcggacgag ccgacgacca tgccgaggga
      241 caggatcatc agagcgaggc cgatggcgat gcggccgctc tgctgcacaa ccggcgagcc
      301 cgacagcatg aacgccgcga cgccggcgat cagcagcacc ggcacgaaag cgccgaggtt
      361 gaacgacagg gcctgcacca cgagggtcga gccgatgtcg gccccgagca tcagcgcgag
      421 cgccgccgtc agggtcacga gcccgcgctc gacgaagccg acgacgatca gccccgtcgc
      481 cgacgagctc tgcaccgccg tcgcgacgcc gacgcccgtg aggcaggccc acacggggtt
      541 cgccgtcgcg tggccgatgg cgcgccggaa gcgctcgccg aaggcgcgca gcacccccgt
      601 cttcaccatc cgggtggccc agagcagcag cgcgatgccg ccgagcaggt tcaacagaag
      661 cgtgtggccc ggcaggcttg cagtcaacgc gctcgaagct cccttttatt cgtccgatta
      721 aggtcccatc ggaccggctt gtcacgtgct gaggcggtca cgacccgttg tgaaccgcgg
      781 tgcgtggatt cgctactcgg ccgcgagcgc ggcgggtttc aggcgcgccg cgacgtcgag
      841 gagggcgcgg tcgtgcagca cgacgatccg ctccttggcc ttgagccaac gcaccgcgtc
      901 ctcgagggtg tcggcctcta cgagcttcgc ctgggcgagc gcgcgatccg tgtcgatctc
      961 gccccgcttg cgcggcgcag gcggcggcag catggcctcg tgctgctcgc gcaggctcgg
     1021 gtcccggcac aacgcgacga gcccgtcctg gtcgtcgtag ccgttccggg cgagttcctc
     1081 ctgcaaaccg ttggcccgcg tcgctatcgc tggcggctgc gcttcctccg gcgtcatcag
     1141 gagcttcagg cgcttcaacg ccagcccaag accgagctga ccgctgagcc aggacagcgg
     1201 gatcgcgagg atcaggccga tgagggtcgg cgacatccag agcgcgaggg aggtcgcgat
     1261 cgaaagggcc gacacggccg cgacgatgcc gagcagcgtg tgccagcggt ggcgccggac
     1321 gatgtcgcgc agcgggatcg acccgtcgtc gcgccgctgc ggctgccacc ccgtatcgcg
     1381 gccgaggagg atctggaaca cggaacccga ctggatcagc atcaggatcg gcgcgatgag
     1441 cgccgagatg acgatctcga tgaaggccga gaccacgagg cggatcgcgc cgccgcaggc
     1501 gcggcgcccc tccggccgca tgagcatgag caggagcccg aagaacttcg gcgccagcag
     1561 gatcgccatc gtcgcgccga agagcatgag ggcgcgctcg gggtcgaacc gcggccacac
     1621 ggggaagagc gtcacctcct tggtgaagta ctccggccgg atgtaggtcg tctggagcac
     1681 gagcgcgatg ccgacgatga gctggaagag ccagaacggc gacgcgaggt acgacatgat
     1741 gccggtcgcg aagtgctggc gggtcggcag cttcaggccg cgcgcgccga tcacccgcat
     1801 gtgttgcagg tttccctggc accagcgccg gtcgcgggtc gccaggtcga tgagggaggg
     1861 cggactctcc tcgtagctgc cgccaaggtc gggcagcatg tagacggtcc agcccgcccg
     1921 ccggatgagg gccgcttcga cgaagtcgtg gctcatgatg tgaccgccga gcggcggctt
     1981 gccgcgcaga tccggcaagc ccgcatgcgc cgcgaaggcg cgcgtgcgga tgatggcgtt
     2041 gtggccccag tagttgccat ccttgccggt ccagacggag agccccgtcg cgatcaccgg
     2101 gccgtacacc cgcgcggcga actgctgcgc ccgcgcgaag agggtattgc gattgatgat
     2161 gagcggcagg gtctggatga tgcctgcgtc tggatcggcc tccatggcgg ccgcgaggcg
     2221 cacgatgcag tcgccggtca tgaggctgtc ggcgtcgagg accagcatgt tctcgtaggc
     2281 gccgccccag cgcgatacga agtctgcgat gttgccggcc ttgcggtgat ggttcttcga
     2341 acggtggcgg taatagatgc gcgcgtccgg cccgctgcgc tcccgcaggg cgaggaaggc
     2401 gcgctcctcg gcgatccagg cgttcgggtc ggtcgagtcc gacaggatga agtagtcgaa
     2461 gcgcgcaccg aggccggtcg cctcgatgga ttcgcggatg gcctggaggg ccgcgaaggt
     2521 tcgtgccgtc tgctcgttgt agaccggcat gacgaccgcc gtccggctct cgagactcgc
     2581 ggggagcggc ggcagggcgg cggggcggcc cagaagggcg aagagcccga gcagcgcgct
     2641 cgtgaaggcg agggcgatcc acgagaagtt gaccgtgaac aaaagaagca gaaggtactg
     2701 caggatcgtc gtacggctga ccgagacgac ctcgtacatc tcgtaggcgc cccacgcggt
     2761 cagcgccgcc gcaccgccga agacgaaggt gcgcgcggcc cagggggtcc ggtagagctg
     2821 cggcgccacg aaggcgcgct cctcctgcgg cgaccaccgc cagaggtgct gggtcggcat
     2881 ggcgagcggg ctctcggcgg gcatcgccgg ctcgggcgcc tgcgccggcc gctcctcgac
     2941 ctccgccggt gctacggcgt ccaacgataa agccatgtct cgcttaaggg ttttccgccc
     3001 gcttcgagga cgaggcgcat ctcacacgcg ttttcgctgc cagggtcaag ctcgaaggtc
     3061 acgcgggtgg tcttgcgctc cgggtagcgc cagagcctcg gcgcttggat ggtgcctgga
     3121 gcggttgtga gcgccggcct gaggtcggcc gcggccgcgt ccgggatctc gcccgcgaag
     3181 tcgatgctga agcggcggcg ccggcccgct gaacctttgc cgacccgcgt ggccgtgacc
     3241 gcggcaaggg gagggcgctc cggcatggtc cagcaccaga actggcggaa tgcgagcgcc
     3301 acctcgcttc cggccggcag gggccccttt gggcgccaat aggcgaggat gttgtcattc
     3361 atctcggcgt cgctcgggat ttcgatgagc tgcacgacgc cgtcgcccca ctcgccgagg
     3421 ggctcgaccc ataac
//
LOCUS       DASQWN010000597         3746 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_156090, whole genome shotgun sequence.
ACCESSION   DASQWN010000597 DASQWN010000000
VERSION     DASQWN010000597.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 3746)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3746)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3746
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_156090"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            45..1481
                     /locus_tag="VE686_11155"
     CDS             45..1481
                     /locus_tag="VE686_11155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018043805.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA];
                     GO_function: GO:0015288 - porin activity [Evidence IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TolC family outer membrane protein"
                     /protein_id="HYY85039.1"
                     /translation="MRVTDQRVSPGWRITLSVLGPFVLLASVGAASAETLESALVRAY
                     HANPTLNAQRASVRATDENVPRAKSLGRPRVNATADAGIQYQETHSGAGSTIVRSLPR
                     GVGLQVDQNIFNGNRTDNGIRQAETQVFGARETLRNNEQTTLFNGVTAYMNVLRDTAI
                     LSLQRNNVEVLEEQLRQTRDRFNVGEVTRTDVAQAESRVAGSRSQVAVAEANLRNSIA
                     VFRQVIGVEPRSLAPGRPIDRLVPRTLDTAVSVALDEHPAVKAALHAVDAAELQVKIT
                     EAELYPRLDLRGAASQRWTGTATAGGGDRNVGFGSNEASTFVASAVATLTVPIYEGGE
                     VYARTRQAKETVGQRRLEADATRDQVRAAVVSAWGQLESSKASIIAAQAQVQAAETAL
                     SGVREEARVGQRTTLDVLNAQQELLNARVNLITAQRDRVVASYAVAQASGRLSSQSLA
                     LNIATYSAKTHYDQVKDLWGGLRTPDGR"
     gene            1612..2160
                     /locus_tag="VE686_11160"
     CDS             1612..2160
                     /locus_tag="VE686_11160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015952812.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2497 domain-containing protein"
                     /protein_id="HYY85040.1"
                     /translation="MSAANPKPQEPSMEEILASIRRIISDDEGRAAAERAHGIEAESD
                     DPLASLATFPRPAPLLPSGFDHEPSASDDGFHDERFGAHDAEDLPDYPRQSADVAAAA
                     LDEPEADEAEPLISRATDASVGQAFDLLAHTVLAGTPRPIEEVVREMLRPMLRVWLDD
                     NLPTIVERLVRAEIERVARGGR"
     gene            2336..>3746
                     /locus_tag="VE686_11165"
     CDS             2336..>3746
                     /locus_tag="VE686_11165"
                     /EC_number="6.1.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003601265.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004812 - aminoacyl-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0004832 - valine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006438 - valyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="valine--tRNA ligase"
                     /protein_id="HYY85041.1"
                     /translation="MMDKTFDPAAVEARIAARWEEAQAFKAGRPDRQGAKPYTIVIPP
                     PNVTGSLHMGHALNNTLQDILCRFERMRGRDVLWQPGTDHAGIATQMVVERQLMERQI
                     HRRELGREEFVNRIWAWKEESGGAIVNQLKRLGASCDWSRERFTMDPGLSEAVLKVFV
                     DLHREGLIYKDKRLVNWDPKFQSAISDLEVQQIEVKGNLWHIKYPIEGEAGRFIVVAT
                     TRPETMLGDVAVAVHPEDERYRDLVGKHAILPLVGRRIAIVADEYSDPEKGTGAVKIT
                     PAHDFNDFEVGRRHGLPLINIFGPEAELRLRGNTGFLDGATASPDLDAVLALEGLDRV
                     EARKRVVAMLEAGELLTAVEQHTHAVPHGDRSGAVIEPYLTDQWYVNVRPLAERAMAA
                     VREGKTRFVPENWDKTYFQWLENIEPWCISRQLWWGHQIPAWHDADGNVFVAHDEAEA
                     SAKAREKNGRDVPLTRDEDV"
BASE COUNT          636 a         1324 c         1275 g          511 t
ORIGIN      
        1 ttcttcaaat gcggctccac aacagcgtgc gagccgatag gcaggtgcgc gtgacggacc
       61 aacgtgtttc ccccggctgg cgcatcaccc tcagcgtcct ggggcctttc gttttgcttg
      121 cgagcgtcgg ggcggcctcg gccgagaccc tcgagagcgc gctcgtgcgc gcctaccacg
      181 ccaacccgac cctgaacgcg cagcgtgcaa gcgtgcgagc gaccgacgag aacgtgccgc
      241 gcgcgaagtc ccttggccgc ccgcgcgtga atgcgaccgc ggacgccggc atccagtacc
      301 aggagacgca ctcgggcgcg ggaagcacca tcgtccgcag cctgccgcgc ggcgtcggtc
      361 tgcaggtcga tcagaacatc ttcaacggga atcgcaccga caacggcatc cgccaggccg
      421 agacccaggt gttcggtgct cgcgagaccc tgcgcaacaa cgagcagacg acgctcttca
      481 acggcgtcac cgcctacatg aacgtgctgc gcgacacggc gatcctgagc ctgcagcgca
      541 acaacgtcga ggttctcgag gagcagctgc ggcagacccg cgaccgcttc aacgtcggcg
      601 aggtgacgcg cacggacgtc gcgcaggcgg aatcccgcgt cgccgggtcc cgctcccagg
      661 tcgccgtggc ggaagccaac ctgcgcaaca gcattgctgt atttcggcag gtcatcggcg
      721 tcgagccgcg atcacttgcg ccgggccggc ccatcgaccg cctggtgccg cgcaccctcg
      781 ataccgcggt ctcggtcgcg cttgacgagc accccgccgt caaagcggcg ctgcatgcgg
      841 tcgacgcggc ggaactgcag gtcaagatca cggaggcgga actctatccg agactcgatc
      901 tgcgaggcgc ggcgagccag cgctggaccg ggacggcaac ggccggcggc ggcgaccgca
      961 atgtcggctt cggcagcaac gaggcgagca ccttcgttgc ctcggcggtc gccacgctga
     1021 cggtgccgat ctacgagggc ggcgaggtct acgcgagaac gcgccaggcc aaggagactg
     1081 tcggtcagcg ccgcctcgag gctgacgcca cccgcgacca ggtgcgcgct gccgtcgtct
     1141 cggcgtgggg ccagctcgaa tcctcgaagg cgtcgatcat cgccgcgcag gcgcaggtgc
     1201 aggcggccga gacggcgctg tccggcgtgc gtgaggaagc ccgcgtcggc cagcgcacga
     1261 cgctcgacgt gctgaacgcc cagcaggagc tcctcaacgc ccgggtcaac ctgatcaccg
     1321 cgcagcgcga ccgggtggtc gcctcctacg cggtcgcgca ggcgagcggg cgtttgtcgt
     1381 cccaatcgct cgccctgaat atcgcaacct atagcgcaaa gacgcactac gaccaggtga
     1441 aggacctatg gggcggcctg cgcacccccg acgggcgctg accgcgagga agctgttcag
     1501 cggaaagcgg gtttccttgc gccggccgat ggcgcctgag acgttgtgcg acggaggcga
     1561 gcgattcgcc cgcctacgcc ccaatgtcga gacgacgcca gagacgatgc gatgagcgca
     1621 gccaacccga agccgcaaga gccctccatg gaggagatcc tggcctcgat ccggcgcatc
     1681 atctccgatg atgaggggcg cgcggcggcc gagcgcgcgc acggcataga agccgagagc
     1741 gatgatccct tggcatcgct cgcgaccttc ccccgcccgg cgccgctgct gcctagcggc
     1801 ttcgaccacg agccgtcggc aagcgacgac ggtttccatg acgagcgttt cggagcgcac
     1861 gacgccgagg acctgccgga ctatccgcgc cagagcgccg acgtcgcggc cgcggcgctc
     1921 gatgagccgg aggcggacga agcggagccg ctcatctcgc gggcaaccga cgcctccgtt
     1981 ggccaggctt tcgacctcct cgcccacacg gtcctcgccg gcaccccgcg gcccatcgag
     2041 gaggtcgtgc gcgagatgct gcgtcccatg ctgcgcgtct ggctcgacga caacctgccc
     2101 accatcgtcg agcgcctggt gcgcgcggag atcgagcgcg tcgcccgggg cggccgctga
     2161 cttccgctgt cagtcggggc cgcggccaag cccccggccg gaggggagat cgctccgcga
     2221 tcacccgcgg gtcggtcgag aacggcaggc gctcaggttg actatggctc cgcgcttcgg
     2281 tttctagccg gagctgcgcg cccgagagcg cgccaacccc cgaccctaaa agccgatgat
     2341 ggacaagacc ttcgatcccg ccgccgtgga ggcgcgcatc gccgcccgtt gggaggaggc
     2401 gcaggccttc aaggcgggcc gtccggaccg gcagggcgcc aagccctaca ccatcgtgat
     2461 cccgccgccg aacgtgacgg gctccctgca catgggccac gcgctcaaca acaccctgca
     2521 ggatatcctg tgccggttcg agcgcatgcg cggccgcgac gtcctgtggc agccaggcac
     2581 cgaccatgcc ggcatcgcga cccagatggt ggtcgagcgc cagctcatgg agcgccagat
     2641 ccatcgccgc gaactcgggc gcgaggagtt cgtcaaccgg atctgggcgt ggaaggaaga
     2701 gtccggcggc gccatcgtca accagctgaa gcgcctgggc gcctcgtgcg actggtcgcg
     2761 cgagcgcttc accatggacc cgggcctctc cgaggccgtg ctcaaggttt tcgtcgacct
     2821 ccaccgcgag gggctgatct acaaggataa gcgcctcgtc aactgggacc cgaagttcca
     2881 gagcgcgatc tcggacctcg aggtccagca gatcgaggtg aagggcaacc tctggcacat
     2941 caagtacccg atcgagggcg aggcgggccg cttcatcgtc gtcgcaacga cccggcccga
     3001 gaccatgctc ggcgacgtcg ccgtcgcggt gcacccggag gatgagcgtt accgcgatct
     3061 cgtgggcaag cacgccatcc tgccgctggt cgggcggcgg atcgccatcg tggcggacga
     3121 gtattccgac cccgagaagg gcacgggagc cgtcaagatc acgccggcgc acgacttcaa
     3181 cgatttcgag gtcggccgcc ggcacgggct gccgctcatc aacatcttcg ggcccgaagc
     3241 ggagttgcgc ctgcgcggca acaccggctt tctcgacggt gccaccgcgt cgcccgacct
     3301 cgatgccgtg ctggcgctcg agggcctcga ccgcgtcgag gcgcgcaagc gcgtcgtcgc
     3361 catgctggag gcgggcgagc ttctcaccgc cgtcgagcag cacacgcacg ccgtcccgca
     3421 cggcgaccgc tcgggcgcgg tgatcgagcc ctacctcacg gaccagtggt acgtgaacgt
     3481 gcgcccgctc gccgagcgcg ccatggccgc ggtgcgcgag ggcaagaccc gcttcgtccc
     3541 ggagaactgg gacaagacct actttcagtg gctcgagaac atcgagccgt ggtgcatctc
     3601 gcgccagctg tggtggggcc accagatccc ggcctggcac gacgccgacg gcaacgtctt
     3661 cgtcgcccac gacgaggcgg aagcgagcgc gaaggcgcgg gagaagaacg gccgggacgt
     3721 tcctctgacc cgggacgagg acgtcc
//
LOCUS       DASQWN010000598         2675 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_262757, whole genome shotgun sequence.
ACCESSION   DASQWN010000598 DASQWN010000000
VERSION     DASQWN010000598.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2675)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2675)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2675
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_262757"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..183)
                     /locus_tag="VE686_11170"
     CDS             complement(<1..183)
                     /locus_tag="VE686_11170"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY85042.1"
                     /translation="MPTTSARLALGFAAAALAHVIFQGALGATLYAGNLVPELVWSLE
                     PVPPFGVPTTVNNMFWD"
     gene            complement(290..1723)
                     /locus_tag="VE686_11175"
     CDS             complement(290..1723)
                     /locus_tag="VE686_11175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002718070.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HYY85043.1"
                     /translation="MNESIINADIAVIGAGSGGLSVAAGAAQLGASTVLIEKDRMGGD
                     CLNTGCVPSKALLASAKAARRWRGEQALGVNHAPPSVDFAAVNRHVHEVIAAIAPNDS
                     IERFEGLGVKVIKGAARFAGPREIVVDGTRIRARRFVIATGSRAAVPPIPGLERVPYF
                     TNETVFENTELPRHLIIIGGGPIGLEMAQAHRALGSEVTVLEAFRILPKDDPELALML
                     RERLVGDGIAIREQVTIARVESEDAGVAAVLESADSGRERIVGSHLLVAAGRRPNVTD
                     LDLEKAGIDYGPKGIGVDARLRTTNRTVFAIGDVAGGPQFTHVAGYHAGIVIRNALFR
                     QPAKVDYRSLPWVTYTDPEFAHVGLTEEQARAAHGDDITVLRWPYHENDRAQTEREAH
                     GLLKAVTTRSGKILGASILGAQAGELIQVWVLAIGQGLNIKALAGMIAPYPTLGEVSK
                     RAAGSFFTPRLFSPRTRKLVRFLSWFG"
     gene            complement(1720..2517)
                     /locus_tag="VE686_11180"
     CDS             complement(1720..2517)
                     /locus_tag="VE686_11180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011995217.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TVP38/TMEM64 family protein"
                     /protein_id="HYY85044.1"
                     /translation="MTIARFPPQRRTGSPDRIPLPATGTKSLTLRLATIAGVVAAVAV
                     LLNVTGALDYLSFAELARNREWLDERVQDLGYAAPLVFVLVYALCTAFSLPTGLLLST
                     LGGFLFGTLWGGFFNVVGATLGATMLFLAARTALGDVLRAHAGPSLRKLEAGFRENEL
                     SYMLVLRLVPLFPFWLVNLAPAFLGVRTSTFIIGTFVGIIPGALVFASVGTGLGAILA
                     SGGTPDGSALLQPHVLLPIGGLVILALIPVVLKRFRHRPASNLEHSS"
BASE COUNT          466 a          839 c          964 g          406 t
ORIGIN      
        1 gtcccagaac atgttattga ccgtggtggg cacaccaaag ggtggcactg gctcgaggct
       61 ccagacaagc tccggcacca gattgccggc gtagagagtg gcgccgagtg cgccctggaa
      121 gatcacgtgc gcgagggctg cggcggcgaa gcccagcgca aggcgagctg aggtcgtagg
      181 catggaaacg gctcctgaca ggactctggg ccggcgctgc gacggcgccg gaggtggggg
      241 atctctccgg gatgaagaac cggtttcgac gtgaccgtcg gttcgaggat cagccgaacc
      301 aggacaggaa gcggaccagc ttcctggtgc gcgggctgaa cagcctgggt gtgaagaagc
      361 tgcccgcggc gcgcttgcta acctcgccga gcgtcggata gggggcaatc atcccggcga
      421 gcgccttgat gttcagcccc tggccgatcg ccagcaccca gacctggatc agctcgccgg
      481 cctgcgcccc gaggatcgag gcgccgagga tcttgccgga tctggtcgtc accgccttca
      541 ggaggccatg ggcctcgcgc tccgtctgtg cgcggtcgtt ctcgtgatag ggccagcgca
      601 gtaccgtgat gtcgtcgcca tgggccgcgc gcgcctgctc ttcggtgagg ccgacatgag
      661 cgaactcggg atcggtatag gtcacccagg gaagcgagcg gtagtcgacc ttggcgggct
      721 ggcggaacag cgcgttacgg atgacgattc cggcgtgata gccggccaca tgggtgaatt
      781 gcggtccgcc ggcgacgtcg ccgatcgcaa agacggtgcg attggtggtg cgcagccgcg
      841 catcgacccc gatgcccttg gggccatagt cgatgccggc tttctcgaga tcgagatcgg
      901 tgacattcgg gcgcctgccg gcagcgacga gcagatgcga gccgacgatc cgttcccggc
      961 cgctgtccgc gctctcgagc accgcagcca caccggcgtc ttccgattcg acgcgcgcga
     1021 tcgtcacctg ctcgcggatg gcaatgccgt cgccgacgag acgctcccgc agcatcagcg
     1081 cgagttcggg gtcgtccttc ggcaggatgc ggaaggcttc cagcaccgtc acctccgaac
     1141 cgagcgcccg atgcgcctgg gccatttcga gaccgatcgg gccgccgccg atgatgatca
     1201 gatgacgcgg cagctcggtg ttctcgaaca ccgtctcgtt ggtgaagtat ggcacgcgct
     1261 cgagcccagg gattggaggc acggcggccc tggatccggt cgcgatgacg aagcggcggg
     1321 cgcggatgcg cgtcccatcg acaacaatct cgcgcggtcc tgcgaagcgg gcggcgccct
     1381 tgattacctt gacgccgagc ccctcgaacc gctcgatcga gtcattcggc gcgatcgcgg
     1441 cgatcacctc gtggacgtgc cggttcacgg ccgcgaagtc gacgcttggc ggcgcgtggt
     1501 tgacgcccag cgcctgctcg ccgcgccagc ggcgggcggc cttcgccgag gcaagcagcg
     1561 ccttcgatgg cacgcagccg gtgttgaggc agtcgccgcc catgcgatcc ttctcgatca
     1621 gcacggtcga ggcgccgagc tgggcagcac cggcggcaac cgaaaggccg ccggagccgg
     1681 cgccgatgac cgcgatgtcc gcattgatga tggactcgtt catgaggaat gctccaggtt
     1741 ggaggccggc cggtggcgga accgcttcag gacgaccggg atcagcgcca ggatgacgag
     1801 gccgccgatc ggaagaagga cgtgtggctg gaggagggcg gagccgtcgg gcgtgccgcc
     1861 gctcgccagg atcgcgccga ggcccgttcc aacgctggcg aaaacgagcg ctcccggaat
     1921 gatcccgacg aaggtgccga tgatgaaggt ggacgtgcgg accccgagga acgccggcgc
     1981 cagattgacg agccagaagg ggaacagcgg caccagacga agcaccagca tgtagctgag
     2041 ctcgttctcg cgaaagccgg cttcgagctt ccgcagcgag gggccggcgt gggcacggag
     2101 aacatcacca agggcggttc tcgccgccag gaagagcatc gtcgcgccga gcgtcgcccc
     2161 gaccacgttg aagaagccgc cccacagcgt cccgaagagg aagccgccca gcgtcgacag
     2221 caggaggccc gtggggagcg aaaacgcggt gcacagggcg tagacgagga cgaagacgag
     2281 cggcgctgca tagccgaggt cttgcaccct ctcgtccagc cattcccggt tgcgtgcgag
     2341 ctccgcgaag ctgagataat cgagcgctcc ggtcacgttc aaaagaacgg cgaccgcagc
     2401 gacgacgccg gcaattgtcg ccagccggag cgtcagggac ttcgttcccg ttgccggaag
     2461 cggtatccga tcagggctgc cggtccggcg ctggggaggg aagcgggcaa tggtcatgtt
     2521 cgagatcctc tcgcctctgc cgaggccgtg tgttgtggcg gtgggttggt gaggcgcgat
     2581 gtgcgccgga cggtcagctg tgcagcgcct tcggcgatgc gctggtgttt cgccgggcaa
     2641 gtgcgagtgc tgctccgaag atcagggcga ggccg
//
LOCUS       DASQWN010000599         2804 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_859935, whole genome shotgun sequence.
ACCESSION   DASQWN010000599 DASQWN010000000
VERSION     DASQWN010000599.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2804)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2804)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2804
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_859935"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..470
                     /locus_tag="VE686_11185"
     CDS             <1..470
                     /locus_tag="VE686_11185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015952790.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="chorismate-binding protein"
                     /protein_id="HYY85045.1"
                     /translation="RNDVGRVSALGTVSVTDSFFIEHYSHVMHIVSNVEGALGDGHDA
                     LDALVAGFPAGTVSGAPKVRAMEIIDELEKEKRGPYAGCIGYFGANGEMDTCIVLRTA
                     LVKDGRMSVQAGAGIVYDSDTASEQQECVNKAKALFRAAEEAVRFASRAGRGQ"
     gene            complement(530..751)
                     /locus_tag="VE686_11190"
     CDS             complement(530..751)
                     /locus_tag="VE686_11190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015951514.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY85046.1"
                     /translation="MPRYFFHVKDGTALPDNDGLELRDSDEARAEAVIAAGEALRDAG
                     PRFWRHGEWQMVVTSDTGETVCTLRFSGG"
     gene            902..1522
                     /locus_tag="VE686_11195"
     CDS             902..1522
                     /locus_tag="VE686_11195"
                     /EC_number="4.1.3.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018261252.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004049 - anthranilate synthase activity
                     [Evidence IEA];
                     GO_function: GO:0046820 - 4-amino-4-deoxychorismate
                     synthase activity [Evidence IEA];
                     GO_process: GO:0000162 - tryptophan biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminodeoxychorismate/anthranilate synthase
                     component II"
                     /protein_id="HYY85047.1"
                     /translation="MARTIVIDNYDSFTWNLVHLIAPLVDGIEVVRNDAITTQEVLDR
                     KPDSIVLSPGPCTPNEAGLCLDLVARAGSRVPMFGVCLGLQAIGQALGGAVVRAPLPM
                     HGKLSEIRHRGGGVFRGINAPIQATRYHSLVVDRGSCPEELEITAETDDGLIMGLSHR
                     SLPIHGVQFHPESILSEHGETILRNFFALAAAWNARARDNAAAPVH"
     gene            1529..2542
                     /gene="trpD"
                     /locus_tag="VE686_11200"
     CDS             1529..2542
                     /gene="trpD"
                     /locus_tag="VE686_11200"
                     /EC_number="2.4.2.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015932022.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004048 - anthranilate
                     phosphoribosyltransferase activity [Evidence IEA];
                     GO_process: GO:0000162 - tryptophan biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="anthranilate phosphoribosyltransferase"
                     /protein_id="HYY85048.1"
                     /translation="MESFKPYLAKVATGAALSREEARAAFDTLLSGEVTPAQGGGFLM
                     ALRVRGEALDEISGAVEAMRGRMLRVSAPKDAIDVVGTGGDHSGSYNISTLAAIIVAA
                     SGVPVAKHGNRAASSRSGAADVLTALGVKIGLDPAALERCLAEAKLCFMFAQTHHASM
                     RHVGPVRVELGTRTLFNLLGPLSNPAGVDRQLLGVFSETWLEPLTQALKDLGSRRVWA
                     VHGSDGLDEMTTTGATSVVALEDGAIRRFTVHPQEVGLKVARPEDLKGAEPEHNAAQL
                     RAVLDGARTPYRDVALLNAGAALVVAEQVKDLREGVERAAATVDSGAARATLDTLIRV
                     SNA"
     gene            2553..>2804
                     /locus_tag="VE686_11205"
     CDS             2553..>2804
                     /locus_tag="VE686_11205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009491160.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="indole-3-glycerol-phosphate synthase TrpC"
                     /protein_id="HYY85049.1"
                     /translation="MSDVLARIEAYKRREIADAKARVSQPEIERLARAAPPPRGFAGA
                     IGGALAAGRPALIAEIKKASPSKGLIRADFNPPALARAYA"
BASE COUNT          433 a         1022 c          938 g          411 t
ORIGIN      
        1 gccgcaacga cgtcggccgc gtctcggcgc tcggcaccgt gtcggtgacg gacagcttct
       61 tcatcgagca ctacagccat gtcatgcaca tcgtgtcgaa cgtcgagggc gcgctcggcg
      121 acgggcacga tgccctcgac gcgctcgtcg ccggctttcc ggccggcacc gtctcgggtg
      181 cgccgaaggt gcgcgccatg gagatcatcg acgagctcga gaaggagaag cgcggccctt
      241 atgccggctg catcggctac ttcggcgcga acggcgagat ggacacctgc atcgtcctgc
      301 gtacggcgct ggtgaaggac gggcgcatgt cggtccaggc cggcgccggc atcgtctacg
      361 attccgacac tgcctccgag cagcaggagt gcgtcaacaa agccaaggct ctgttccgtg
      421 ccgccgagga ggccgtccgg ttcgccagcc gcgcaggacg cggccagtag cgcgctcgaa
      481 tccgccggcg acggctagcg agcttgcacc gcacaggaag cgggaagcat cacccgcctg
      541 agaagcggag cgtgcagacg gtctcgccgg tgtcgctggt cacgaccatc tgccactcac
      601 cgtggcgcca gaatcgcggt cctgcgtccc tgagcgcttc acctgctgcg atgacggctt
      661 cagcgcgggc ctcgtcagag tcgcgcagtt ccagtccgtc gttatcgggg agggcagtgc
      721 cgtctttgac gtggaagaaa tagcggggca tcggcgacgc atagcggccc ggcgcgagat
      781 cagcagcaaa ctagggcaaa cagccacgtt taactgtgtt gtcgacggct gaaccccgag
      841 accctccgcg acccggcttc ccttgacgct cccgggcatc ggcggcaaac ccgcaggcgc
      901 catggcccgc accatcgtca tcgacaacta cgacagcttc acctggaacc tcgtccacct
      961 gatcgcgccc ttggtcgacg ggatcgaggt ggtgcgcaac gacgcgatca ccacgcagga
     1021 ggtgctcgac cgcaagcccg actccatcgt gctctcgccc ggcccgtgca cgccgaacga
     1081 ggccggcctg tgccttgacc tcgtcgcccg cgccggttcc agggtgccaa tgttcggcgt
     1141 gtgcctcggg ctgcaggcga tcggtcaggc gctcggcgga gccgtggtcc gcgcacccct
     1201 ccccatgcac ggcaagctct ccgagatccg tcaccgcggc ggcggcgtct tccgcggcat
     1261 caatgcgccg atccaagcga cgcgctatca ctcgctcgtc gtcgatcggg ggagctgccc
     1321 ggaggagctc gagatcacgg ccgagaccga cgacggcttg atcatgggcc tgtcgcaccg
     1381 ctcgctgccg atccacgggg ttcagttcca tcccgagagc atcctgtcgg agcacggcga
     1441 gacaatcctg cgcaacttct ttgcgctcgc ggccgcatgg aatgcacgtg cgcgtgacaa
     1501 cgccgccgcc ccggtgcatt gacgggcgat ggagtccttc aagccctatc tcgccaaggt
     1561 ggcgaccggc gcggcgctgt cgcgcgagga agcccgtgcc gcgttcgaca ccctcctgtc
     1621 gggcgaggtg acgccggcgc agggcggcgg attcctcatg gccctgcggg tgcgcggcga
     1681 ggccctggac gagatctcag gcgccgtcga ggccatgcgc gggcgcatgc tgcgcgtgag
     1741 cgcgccgaag gacgccatcg acgtcgtcgg caccggcggc gaccactcgg gcagctacaa
     1801 catctcgacg ctcgcggcga tcatcgtggc ggcgagcggc gtgccggtcg cgaaacacgg
     1861 caatcgcgcc gcctcgtcgc gctccggcgc cgccgacgtg ctgacggcgc tcggcgtcaa
     1921 gatcggcctc gaccccgccg ccctcgagcg ctgccttgcc gaggcgaagc tctgcttcat
     1981 gttcgcgcag acgcaccacg cctccatgcg ccacgtcggg ccggtgcgcg tcgagctcgg
     2041 aacgcgcacg ctgttcaacc tgctcgggcc cttgtcgaac ccggccggcg tcgaccgcca
     2101 gctcctcggc gtgttctccg agacctggct cgagcccctg acccaggcgc tgaaggacct
     2161 cggcagccgc cgggtatggg ccgtgcacgg ctccgacggt ctcgacgaga tgacgaccac
     2221 cggcgcgacg tcggtggtgg ccctcgagga tggtgcgatc cgccgcttca cggtccatcc
     2281 ccaagaagtt ggcctcaagg tcgcccggcc cgaggacctc aagggcgccg agccggagca
     2341 caatgccgcg cagctgcgcg ccgtgctcga cggtgcccga accccctacc gcgacgtggc
     2401 gctcctcaac gccggcgcgg ccctcgtcgt cgccgagcag gtcaaggatc tgcgcgaggg
     2461 cgtcgagcgc gcggccgcga cggtggacag cggcgcggcg cgcgcgaccc tcgacacgct
     2521 catccgcgtc tcgaacgcct gacgaaagcc cgatgagcga cgtcctcgcc cgcatcgaag
     2581 cctacaagcg gcgcgagatc gccgacgcca aggcccgggt ttctcagccc gagatcgagc
     2641 ggctcgcgcg cgcggcgccg ccgccccgtg gcttcgccgg cgcaatcggg ggcgcgctcg
     2701 cggcggggcg ccccgctctc attgccgaga tcaagaaggc cagcccctcg aaaggcctga
     2761 tccgcgccga tttcaatccc cccgccctcg cccgcgccta tgcc
//
LOCUS       DASQWN010000600         2510 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_156283, whole genome shotgun sequence.
ACCESSION   DASQWN010000600 DASQWN010000000
VERSION     DASQWN010000600.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2510)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2510)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2510
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_156283"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..751
                     /gene="ribA"
                     /locus_tag="VE686_11210"
     CDS             <1..751
                     /gene="ribA"
                     /locus_tag="VE686_11210"
                     /EC_number="3.5.4.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019403958.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="GTP cyclohydrolase II RibA"
                     /protein_id="HYY85050.1"
                     /translation="LARLGLVLPAVIVIPVCQTVETAPCILSVGGDAVQAYRQAMAKA
                     LTVVGRAPVPLEGAGESEFVVFRGGEGLRDQVAIVVGKPDLTRPVAVRLHSACLTGDL
                     FGSLKCDCGDQLRETVKFMAAHDGGILLYLDQEGRGNGIANKMRAYKLQSQGYDTYDA
                     DEILGFELDQRRFDFAAEMLRQLGVGQVRLMTNNPEKIAALRKSGLDVVADQRVMGRP
                     TAENVRYLASKRDRAGHLIDIEAMARAPAQD"
     gene            762..>2510
                     /locus_tag="VE686_11215"
     CDS             762..>2510
                     /locus_tag="VE686_11215"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY85051.1"
                     /translation="MRHEKPWPLASTLLLLGASWLTLSWPWLTGAYTIPWDAKAHFYP
                     QLQFLAQAIHAGEAPFWAPYVFSGTPQIADPQSLIFSPPYLLLALIDPDPGFRAFDAV
                     ALGMLGLGGAALFAFFRDGSWHLAGGLVAAIVFAFGASAAWRIQHIGQILSLSYVPIV
                     LWLLWRALERRSVLYGAAAGSVAAFMVLGRDQVAFLGVLTLAGFVLWHWLAGPDRGAR
                     MRASLLPLAVAAVSGALLIAVPVLLTTLLAQGSNRAAIDYAGAARGSLHPALLLTSAV
                     PNLFGADGPFADYWGPPSPRWGPVDLYLARNMGVLYVGALPFALIVLGAMRGVLWRAP
                     IRFFAVALALMLIYALGGYTPIYRLLFLIPGADLFRRPADATFPIGALAAIVAGYAVH
                     RLWTDAWPKATRRGRLLETLVLALPFAVGAALAAGKGTLGLTVWPLAKAALCLAISLA
                     VIALLPRLRERSPPLALLALVGWLLVDLGWNNGPNESTALPPATYDALRPDTTDPTLA
                     AIKARLQETTSDTTRDRVEIAGLGFHWPNASLVHRLDNVLGYNPVRLADYAAATGAGD
                     HVALPEQRTFAPLFPSY"
BASE COUNT          313 a          924 c          834 g          439 t
ORIGIN      
        1 gctcgcccgc ctcgggctcg tgcttcccgc cgtgatcgtc atcccggtgt gccagacggt
       61 cgagaccgcg ccctgcattc tgagcgttgg cggcgatgcc gtgcaggcgt accgccaggc
      121 gatggcaaag gcgctgacgg tcgtcggccg cgcgcccgtt ccgctcgaag gggcgggcga
      181 gagcgagttc gtggtcttcc gcggcggtga aggcctgcgc gatcaggttg caatcgtggt
      241 cggcaagccg gacctgacgc gacccgtagc ggtgcgcctc cactcggcat gcctgaccgg
      301 agaccttttc ggcagcctga agtgcgactg cggcgaccag ctgcgcgaga cggtgaagtt
      361 catggccgcg cacgacggcg gcatcctcct gtacctcgac caggagggcc gcgggaacgg
      421 catcgccaac aagatgcggg cctacaagct ccagagccag ggctacgaca cctacgacgc
      481 cgacgagatc cttggcttcg agctcgacca gcgccggttc gatttcgcgg ctgagatgct
      541 gcgccagctc ggcgtcggcc aagtcaggct gatgacgaac aaccccgaga agatcgcggc
      601 ccttcggaag tccgggctcg acgtcgtcgc cgaccagcgc gtcatgggac ggcccacggc
      661 cgagaacgtg cgctatctcg catcgaagcg cgaccgggcc ggacacctga tcgacatcga
      721 ggcgatggcg cgcgcgcccg cgcaggactg acgcttagcc gttgcggcac gagaagccct
      781 ggccgctcgc atccacgctg cttctgctgg gggcgagttg gctaaccctg agctggccct
      841 ggctgacggg cgcctacacg atcccgtggg acgcgaaggc gcatttctac ccgcagcttc
      901 agttcctggc gcaggcgatc catgccggcg aggcgccgtt ctgggccccg tacgtgttct
      961 ccggaacgcc gcagatcgcc gatccgcagt cgctcatctt ctcgccgccg tacctcctcc
     1021 tcgcgctgat cgatcccgat cccgggttcc gggccttcga cgccgttgcg ctcggcatgc
     1081 tgggcctcgg cggggcggcg ctgttcgcat tcttccggga tggctcctgg catctggccg
     1141 gcgggctcgt cgccgccatc gtgtttgcgt tcggcgcctc cgcggcgtgg cgcatccagc
     1201 acatcgggca gatcctcagc ctgtcttatg tcccgatcgt gctctggctc ctctggcgcg
     1261 ccctggagcg ccgatccgtg ctctacggag ccgccgccgg ttcggtcgcg gcctttatgg
     1321 tgctcggccg cgaccaggtc gcgtttctcg gggttctcac cctcgccggc ttcgtgctgt
     1381 ggcactggct tgccggcccg gaccggggtg cgaggatgcg ggcgagcctc ctcccgctcg
     1441 ccgtagcagc ggtgtccggc gctctcctca tcgccgtccc ggtgctcctc acgacgctcc
     1501 tggcgcaagg gtcgaatcgg gcggcgatcg attacgcggg cgccgcgcga gggtccctgc
     1561 acccggcgct cctcctgacc agcgcggtcc cgaacctgtt cggggccgat ggcccgttcg
     1621 ccgactactg gggcccgccg agtccgcgct gggggcccgt cgacctctac ctcgctcgca
     1681 acatgggcgt gctctacgtc ggggcgctgc ccttcgcgct gatcgtgctc ggggccatgc
     1741 ggggcgtcct gtggcgcgcg ccgatccggt tcttcgccgt cgcgctcgcc ctcatgctga
     1801 tctacgcgct gggcggctac acgcctatct accggctctt gttcctcatt cccggcgcgg
     1861 acctcttccg ccgccccgcc gacgcgacgt tccccatcgg agcgcttgcg gcgatcgtcg
     1921 caggctacgc cgtccatcgg ctctggacgg acgcctggcc gaaggccacg cggagggggc
     1981 ggcttctcga gacgctcgtt ctggcgctcc cgttcgccgt cggagccgcg cttgcggccg
     2041 gcaagggcac gctcgggcta accgtctggc ctctcgccaa agccgcgctc tgcctcgcca
     2101 tcagcctcgc cgtgatcgcg ttgctcccgc gcctgcgcga gcgctcgccg cctttggcgc
     2161 tcctggcgct cgtcggctgg cttctcgtcg accttggctg gaacaacggc ccgaacgagt
     2221 cgacggccct gcccccggcc acttacgacg cgttgcggcc cgacacgacc gatccgacgc
     2281 tcgcggccat caaggcgcgc ctgcaggaga cgacctccga caccacgcgc gacagggtcg
     2341 agattgcggg gctcggcttc cattggccca acgccagcct cgtccatcgc ctcgacaacg
     2401 tgctgggcta caacccggta cggcttgccg actatgcggc ggcgaccggg gcgggcgacc
     2461 acgtcgcctt gcctgagcag cgcaccttcg caccgctgtt cccgtcgtat
//
LOCUS       DASQWN010000601         3862 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_463605, whole genome shotgun sequence.
ACCESSION   DASQWN010000601 DASQWN010000000
VERSION     DASQWN010000601.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 3862)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3862)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3862
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_463605"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..208
                     /locus_tag="VE686_11220"
     CDS             <1..208
                     /locus_tag="VE686_11220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010685599.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="potassium transporter TrkA"
                     /protein_id="HYY85052.1"
                     /translation="VDDAVPETIEAALQLSEAVLVDVGVPMGLVIASVHERRDEFRAI
                     LRKADGTGPRATEFRSRRTVGKAS"
     gene            290..991
                     /locus_tag="VE686_11225"
     CDS             290..991
                     /locus_tag="VE686_11225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007820770.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease activity regulator RraA"
                     /protein_id="HYY85053.1"
                     /translation="MSLDPVILRALRATTTGTIHTVLLKKGIRRTWMNGPSPIFQAEE
                     RIVGPAFTLRFVPAREDLATPESWSSPRSTRAAIEEMPEGAVCVIDAMGVTDAGVFGD
                     ILCARMHMRGVAALVTDGVVRDGAGVEGTGLPVWCAGVAAPASVAGMTFVGWQEPIGC
                     GGTAVFPNDIIVADGDGAVVIPAAFVEEVAKAGPEQERLEAWIMKEVERGVPLPGLYP
                     PNAETKARYEAESKP"
     gene            1005..1532
                     /locus_tag="VE686_11230"
     CDS             1005..1532
                     /locus_tag="VE686_11230"
                     /inference="COORDINATES: protein motif:HMM:NF018684.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysozyme inhibitor LprI family protein"
                     /protein_id="HYY85054.1"
                     /translation="MTPAVRGERRAAAALAVATALLAGPAFGQAESQVTPADRAAIAS
                     CVSESGNAPRACIGSVAVVCARQAPGERRDAEIACTRREAAVWRERLDVIVGALARRL
                     ESGPRSRLASVERAWESFAAQKCAFFAEVQPPARAPVMQAACELREVAAHALDLERVA
                     RRQGTGPSQRPRIER"
     gene            1575..2378
                     /locus_tag="VE686_11235"
     CDS             1575..2378
                     /locus_tag="VE686_11235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003611637.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdcF family protein"
                     /protein_id="HYY85055.1"
                     /translation="MFFFLSKIFWFLAAPSSVALVLTAIGVSLLFTRATRMGRTLALA
                     GTVALVLIAVSPFGKLVMRPLEDRFPAVDDARPIAGMIVLGGAAGITRGQIAFNDAAS
                     RMTSAVSLALKHPQARIVFSGGDAGFFERGPQTEAEAAAALFMAVGVESDRIVVEDRS
                     RNTHENALFTRELVTPKSGERWVIVTSAFHMPRAIGCFRAVGLDLEAYPVDFRTEGRA
                     GPDLRPFGRLSDGMRMTDLAVKEWIGLVTYRLAGYTDELFPSPSTGARR"
     gene            complement(2330..2617)
                     /locus_tag="VE686_11240"
     CDS             complement(2330..2617)
                     /locus_tag="VE686_11240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012455058.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3253 domain-containing protein"
                     /protein_id="HYY85056.1"
                     /translation="MSAVNPAAVEDTILELLRARGSERTIAPMDVARALGGDHPDGWG
                     PLMPQVRRAAVRLMKHGRLVILRKGRPVDPDDFRGVYRLAPVDGEGKSSSV"
     gene            complement(2614..3309)
                     /locus_tag="VE686_11245"
     CDS             complement(2614..3309)
                     /locus_tag="VE686_11245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015928570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF599 family protein"
                     /protein_id="HYY85057.1"
                     /translation="MAGFTLLDLGALAFFILAWLGYNLGVERHPAGRTGLNVLMNAQR
                     RAWLDETVMRENRIVDTTINASLQNGTAFFASTSLFAIGGVLTLFRSTGDVLELFAEL
                     PFGVVTTRAAWEAKTIGLAVIFVYAFFKFGWSYRLFNYGAVLIGAVPPLRGSDEVQVR
                     AAAARAAAMNVVAAMHFNRGQRAFFFALAYLGWFLSAYVFVAATAAVLVVMWRRQFAS
                     DARRVLLDAEAGS"
     gene            3378..3791
                     /locus_tag="VE686_11250"
     CDS             3378..3791
                     /locus_tag="VE686_11250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014492863.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhodanese-like domain-containing protein"
                     /protein_id="HYY85058.1"
                     /translation="MPQTITRGYKAIVAEANAKIETLSPQDAVKLHGREDVVLVDLRD
                     PRELEREGKVPGAFHCPRGMLEFWIDPESPYHKPVFAQDKRFVFFCAGGMRSALAAAT
                     ASDMGLRPVAHVEGGFGKWKEAGGPVEAFQPKPKG"
BASE COUNT          573 a         1376 c         1377 g          536 t
ORIGIN      
        1 cgtcgacgac gccgtccccg agaccataga ggcggcgctg cagttgtcgg aagccgtgct
       61 cgtcgacgtc ggcgtgccca tgggcctcgt catcgcgtcc gtgcacgagc gccgcgacga
      121 gttccgcgcc atcctgcgca aggcggacgg caccggaccg agagcgaccg agttccgcag
      181 ccgccgcacg gtcgggaagg cgtcctaagc tcgcccggca ttgcgccgcg gggcgccgtc
      241 gcataccact tcgcgcgaaa cggcacccgg tgaaaggcac cttcggccca tgtccctcga
      301 ccccgtgatc ctgcgcgcgc tgcgcgcgac caccaccggc acgatccata ccgtccttct
      361 caagaagggc atccggcgca cctggatgaa cggcccgagc ccgatcttcc aggccgagga
      421 gcgcatcgtc gggcccgcct tcacgctgcg gttcgtcccg gcgcgcgagg acctcgcgac
      481 gccggagtcg tggtcgagcc cgcgctcgac gcgtgccgcc atcgaggaga tgcccgaggg
      541 cgccgtgtgc gtcatcgatg ccatgggggt gaccgacgcc ggcgtgttcg gcgacatcct
      601 gtgcgcacgc atgcacatgc gcggcgtcgc cgccctcgtc accgacggcg tggtgcgcga
      661 cggcgccggc gtcgagggaa ccgggcttcc ggtgtggtgc gccggtgtcg cagcgcccgc
      721 ctccgtcgca ggcatgacct tcgtcggctg gcaggagccg atcggatgtg gcggcacggc
      781 cgtgttcccg aacgacatca tcgtcgccga cggcgacggc gcggtggtga tccccgccgc
      841 cttcgtcgag gaagtcgcca aggccggccc ggagcaggag cggctcgagg cctggatcat
      901 gaaggaggtg gagcgcggcg tccccctccc gggcctctat cccccgaacg ccgagaccaa
      961 ggcccgctac gaggccgaga gcaagccgtg acgcgggacg atcgttgacc cccgccgtgc
     1021 gcggcgagcg acgagccgcc gccgccctcg cggtggcgac ggcgcttctc gccggcccgg
     1081 cgttcggaca ggccgagagt caggtcacgc cggccgaccg cgccgcgatc gcctcctgcg
     1141 tctcagaaag cggcaacgcg ccgcgcgcct gcatcggctc cgtggcggtc gtatgtgcac
     1201 ggcaggcgcc cggcgagcgc cgcgacgccg agatcgcgtg cacgcgccgg gaggccgcgg
     1261 tctggcgcga acgcctcgac gtcatcgtcg gcgctctcgc gcgacggctc gaatccgggc
     1321 cgcgaagccg tctcgcatcc gtcgagcgcg cctgggagag ctttgccgcc cagaagtgcg
     1381 ccttcttcgc cgaggtccag ccgcccgccc gcgcacccgt catgcaggcc gcctgcgagc
     1441 tgcgtgaggt cgccgcccac gcccttgatc tcgagcgcgt ggcgcgccgg caagggaccg
     1501 gaccgtcgca gcgaccccgg atcgagcggt gatcgtgcgc ggtcggcgcg ccctgcgctg
     1561 agcggcgcgc gcgcgtgttc ttcttcctgt cgaaaatctt ctggttcctg gccgcgccgt
     1621 cgagcgtggc gctggtcctg acggccatcg gcgtgtccct cctgttcaca cgggccaccc
     1681 ggatggggcg tacgctggcg ctcgccggca cggtcgcact cgtgctgatc gcggtcagcc
     1741 cgttcggcaa gctcgtcatg cgcccgctcg aggatcgctt ccccgcggtt gacgacgcgc
     1801 ggccgatcgc cggcatgatc gttctcggcg gcgcggccgg aatcacgcgc gggcagatcg
     1861 cgttcaacga tgccgcgtcc cgcatgacct ccgccgtctc actcgcgctc aagcacccgc
     1921 aggcgaggat cgttttctcc ggcggcgacg ccggcttctt cgagcgcggg ccgcagacag
     1981 aagccgaggc cgcagccgcg ctgttcatgg ccgtcggagt cgagtccgat cgcatcgttg
     2041 tcgaagaccg ctcgcgcaac acccatgaga acgcgctgtt cacccgcgag ctcgttaccc
     2101 cgaagtccgg cgagcgctgg gtcatcgtga cgtcggcctt ccacatgccc cgggcgatcg
     2161 gctgcttccg cgccgtcggg ctcgacctcg aagcctatcc ggtcgatttc cgcacggaag
     2221 ggcgcgcggg gccggacctg cgcccgttcg gccgcctgtc ggacgggatg cgcatgacgg
     2281 acctcgccgt gaaggaatgg atcggactcg tgacctaccg cctcgccggc tacaccgacg
     2341 agctcttccc ctccccgtcc acgggcgcca ggcggtagac gccgcgaaag tcgtccggat
     2401 cgacggggcg gcccttgcgg aggatgacga ggcggccgtg cttcatgagc cgtacggcgg
     2461 cgcggcggac ctggggcatg aggggacccc agccgtccgg gtggtcgccc ccgagggcgc
     2521 gggcgacgtc catgggcgcg atggtgcgct ccgagccgcg ggcacggagg agctcgagga
     2581 tggtgtcctc gaccgccgcc gggttgacgg cgctcacgat ccagcctccg cgtcgagcag
     2641 gacccggcgc gcgtcggaag cgaactgccg gcgccacatg acgaccagca ccgcggccgt
     2701 ggccgccacg aacacgtaag cgctcaggaa ccagccgagg taggcgagtg caaagaagaa
     2761 cgcgcgctgg ccgcggttga agtgcatggc ggcgacgacg ttcatggccg cggcgcgcgc
     2821 ggcggcggcg cgcacctgca cctcgtcgct gccgcgtaag gggggcacgg cgccgatgag
     2881 gacggcgccg tagttgaaca gccggtacga ccagccgaac ttgaagaagg cgtagacgaa
     2941 gatcaccgca agcccgatcg tcttcgcctc ccaggccgcc cgcgtcgtga cgactccgaa
     3001 cgggagctcg gcgaagagct caagcacgtc gcccgtcgac cgaaagaggg tgaggacgcc
     3061 gccgatggcg aacaaggatg tcgaggcaaa gaacgccgtc ccgttctgca gcgaggcgtt
     3121 gatggtggta tcgacgatgc ggttctcgcg catcaccgtc tcgtcgagcc acgcccggcg
     3181 ctgcgcgttc atgagcacgt tcaggccggt ccgtcccgcc gggtggcgct cgacgccgag
     3241 gttgtagccg agccacgcca ggatgaagaa cgccagcgcg ccaaggtcga gaagcgtgaa
     3301 gccggccacg gggtctccta ctgttgacga gcgccgcacc ctcgcacacc gtccgggcgg
     3361 agagggagtg cgcaacgatg ccccagacga tcacccgcgg ctacaaggcc attgtggccg
     3421 aggcgaacgc caagattgag acgctgtcgc cgcaggacgc cgtcaagctg cacgggcgcg
     3481 aggacgtggt gctcgtggat ctgcgcgacc cgcgcgagct cgagcgggag ggcaaggtgc
     3541 cgggtgcctt ccattgtccc cgcggcatgc tcgagttctg gatcgatccg gagagcccgt
     3601 accacaagcc ggtcttcgcg caggacaagc gcttcgtctt cttctgcgct ggcggcatgc
     3661 gctcggcgct ggcggccgcg acggcgagcg acatgggctt gaggcccgtc gcccacgtcg
     3721 agggcggttt cggcaaatgg aaggaggccg gcgggcccgt cgaggccttc cagccgaagc
     3781 cgaagggctg acggagcttc caggcggtcg gcagcacgcg gaactcgccc gcccgcccct
     3841 gcgcgaggag cgccgcatcg gc
//
LOCUS       DASQWN010000602         2007 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_860865, whole genome shotgun sequence.
ACCESSION   DASQWN010000602 DASQWN010000000
VERSION     DASQWN010000602.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2007)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2007)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2007
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_860865"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..551)
                     /locus_tag="VE686_11255"
     CDS             complement(<1..551)
                     /locus_tag="VE686_11255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012336112.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HYY85059.1"
                     /translation="MIRYLLRRFLTMAVTLLVISALVFFIIKLPPGDFLTNQIAELRA
                     QGEAAAAAKAEFLIRQYGLDRPVWEQYLVWIGVWPGPNGFSGLLQGDWGWSFEYDRPV
                     TEVVGDALWLTLLVNLAVVIFIHVVSIPIAIYSATRQYSIGDYLATFIGYIGLATPSF
                     LLALILLYYMNRWLGVSIGGLYDA"
     gene            complement(548..>2007)
                     /locus_tag="VE686_11260"
     CDS             complement(548..>2007)
                     /locus_tag="VE686_11260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009494017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HYY85060.1"
                     /translation="EFMLVNGKPPKFEVMDATTVRYVWDKPNPRFLPQLAAARDPFIY
                     RPAHYLKQFHAKYADARKLADAARAQKLKNWASLHNRMDEMFDASNPDQPTLQPWRVT
                     NRAPATRFVFERNPYYHRVDAAGQQLPYVDQIILDVAAPGLMAGKANAGESDLLYRGL
                     TMADVPILKEGEKAKGYKTLLWSNARGSEIALYPNLTVTDPVWRALNRDVRFRRALSL
                     GIDRKTLNNALLFGLGVEGNNTVLQASELFRPELRSAWASYDPGQASRLLDEVGLTKR
                     NSAGIRLLPDGRDLEIIVETDGDGGMIVDALTLIAEFWREIGVKLFVKPQDRTVMRNR
                     VYSGLSTMVAAQGLDLAIPTASMPPTELAPTRQDTYSWAKWGQSFETKGQNGEPVDIP
                     EAKRLLELYGEWMSTGDVAVQERVWREMLENHAANLWSIGTVAGALQPVVTRNGLKNV
                     PDKAYFSWEPTALLGIYRIDEFYWDRQTGKEARLQ"
BASE COUNT          335 a          629 c          697 g          346 t
ORIGIN      
        1 gcgtcgtaga gcccgccgat ggacacgccg agccaacggt tcatgtagta gagcaggatc
       61 agggcgagca ggaagctcgg ggtggcaagc ccgatatagc cgatgaaggt ggccagataa
      121 tcgccgatgg aatattgccg cgtcgccgaa tagatcgcga tcggaatcga gaccacgtgg
      181 atgaagatca ccacggccag gttgacgagg agcgtgagcc agagcgcgtc gcccaccacc
      241 tccgtgactg gccggtcgta ttcgaaggac cagccccaat cgccctgaag caggcccgag
      301 aagccgttcg ggcccggcca cacgccgatc catacgaggt actgctccca aaccggccga
      361 tcgaggccgt actgccggat gaggaactcg gccttcgcgg cggccgccgc ctcgccctgt
      421 gcccgaagct cggcgatctg gttggtcagg aagtcgccgg gcggcagctt gatgatgaag
      481 aagacgagcg ccgagatgac caggagcgtc accgccatgg tcaggaaacg gcgcaggaga
      541 tagcggatca ttgaagccgc gcctccttgc cggtctggcg gtcccaatag aactcgtcga
      601 tgcggtagat gccgagaagc gcggtcggct cccaggagaa gtatgccttg tcgggtacgt
      661 tcttcagacc attccgcgtc acgacgggct gcagagcgcc cgccaccgtt ccgatgctcc
      721 acaggttggc cgcgtggttc tccagcatct cgcgccacac ccgctcctgg acggcgacat
      781 cgccggtcga catccactcg ccgtagagct cgagcaggcg cttcgcctcc gggatgtcga
      841 cgggttcgcc gttctgcccc ttggtttcga aggattggcc ccacttggcc cacgagtagg
      901 tgtcctgccg cgtcggcgcg agctccgtcg gcggcatgct cgcggtcggg atggcgaggt
      961 cgaggccttg ggcggcgacc atggtggaca ggcctgagta gacgcggttg cgcatcaccg
     1021 tgcggtcctg cggcttgacg aagagcttga cgccgatctc gcgccagaac tccgcgatga
     1081 gcgtcagggc atcgacgatc atgccgccgt cgccgtcggt ttctacgatg atctcgaggt
     1141 cgcgcccgtc cggaaggagc cggataccgg cggagttgcg cttcgtcagc ccgacctcgt
     1201 cgagcagtcg cgaggcttgg cccgggtcgt acgaggccca ggcggacctc aactcggggc
     1261 ggaacagctc gcttgcctgc agcaccgtgt tgttgccctc gaccccgagc ccgaacagga
     1321 gggcgttgtt cagggtcttg cggtcgatgc cgagcgacag ggcgcggcgg aagcgaacgt
     1381 cgcggttgag ggcccgccac accggatccg tcacggtaag gttcgggtac agggcgatct
     1441 cgctcccgcg cgcgttcgac cacagaaggg tcttgtagcc ctttgccttc tcgccctcct
     1501 tcaggatcgg cacgtcggcc atggtgaggc cgcggtaaag cagatcggac tcgccggcgt
     1561 tcgccttgcc ggccataagg ccgggcgccg cgacgtcgag gatgatctgg tcgacgtaag
     1621 gcagctgctg cccggccgcg tcgacacggt ggtagtaggg gttcctctcg aacacgaacc
     1681 gcgtcgctgg agcccggttc gtcacgcgcc agggctgcag ggtcggctgg tccgggttcg
     1741 acgcgtcgaa catctcgtcc atgcggttgt gcaggctcgc ccagttcttg agcttctggg
     1801 cacgcgccgc gtcggcgagc ttgcgcgcgt cggcgtactt ggcgtggaac tgcttcaggt
     1861 agtgcgcggg ccggtagatg aaggggtcgc gggcggcggc gagttgcggc aggaaccgcg
     1921 ggttgggctt gtcccagaca tagcgcacgg tcgtcgcgtc catgacctcg aacttcggcg
     1981 gtttgccgtt gacgagcatg aactcgg
//
LOCUS       DASQWN010000603         2348 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_861017, whole genome shotgun sequence.
ACCESSION   DASQWN010000603 DASQWN010000000
VERSION     DASQWN010000603.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2348)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2348)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2348
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_861017"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..660
                     /locus_tag="VE686_11265"
     CDS             <1..660
                     /locus_tag="VE686_11265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015950504.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016810 - hydrolase activity, acting on
                     carbon-nitrogen (but not peptide) bonds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide deacetylase family protein"
                     /protein_id="HYY85061.1"
                     /translation="RGSLWWLELEEAIARLDSIRLPLDGTVIALPSGSPAEKQAAFDA
                     LYGTLRAGPEDRLRAATALLAQQAGIDPGALCRDLCLSFDEIQVLAREPGVTIGAHTL
                     THPILAKHDDAVARREIVEGRRMLEERLAMPVRHLAFPLGDRGSASSREFKLAAEAGF
                     ATAVTTRPGHLFPAHLDRLHALPRISVNGLFQTDAALSALLSGVPFLAWNRGRVAALE
                     P"
     gene            complement(657..1019)
                     /locus_tag="VE686_11270"
     CDS             complement(657..1019)
                     /locus_tag="VE686_11270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012453545.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY85062.1"
                     /translation="MMKHLLVALTLLAPLPAAAQSPTSIGDCEKVKNDMAYNQCLASF
                     GPKVGQRAPRVGIGQDPETSVAETPSRGRARVVRGRRGRQTATFMVVTGGPREVRRAK
                     VSGGRSYGTRRSYHRRRR"
     gene            complement(1096..1308)
                     /locus_tag="VE686_11275"
     CDS             complement(1096..1308)
                     /locus_tag="VE686_11275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003601068.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2842 domain-containing protein"
                     /protein_id="HYY85063.1"
                     /translation="MRVRTRKLVGTLLSIAFLAIYALLAMALAESRIQDASNAVRLVV
                     YVVLGIAWVLPLMPLIQWMQRPDPQG"
     gene            1480..>2348
                     /locus_tag="VE686_11280"
     CDS             1480..>2348
                     /locus_tag="VE686_11280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015932289.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="COX15/CtaA family protein"
                     /protein_id="HYY85064.1"
                     /translation="MRAVRVWLYVLAALVVVMVAVGGATRLTGSGLSITEWRPVTGAI
                     PPLSEAAWAAEFERYKQIPQYELLNRGMTLPEFKRIYAWEWAHRQLGRLIGLVFFLPL
                     AWFWWRGLVSRRLALRLAAVGVLGAMQAGVGWIMVASGLEPGMTAVAPVKLALHLVLA
                     SLILAALVWVAAGLRLHPAAVLPSGRTRGVLVGLIMVQIALGGLVAGSKAGWTYNTWP
                     LMDGAFIPPSNVLFSTSSLIENFVDNLALVQLNHRLIAYLVVAVALWHAATARSQGAL
                     AVAAMAVAQATLGV"
BASE COUNT          311 a          816 c          808 g          413 t
ORIGIN      
        1 cggggcagtc tgtggtggct cgagcttgag gaggcgatcg cgcggctcga cagcatccgg
       61 cttccgctcg acggcaccgt gatcgcgctc ccatccggct cgcccgcgga gaagcaggcg
      121 gcattcgatg cactctacgg cacgctgcgg gcagggccgg aggatcgcct gcgcgccgcc
      181 acggcgctgc tggcccagca agccgggatc gatccgggcg ccctctgccg cgacttgtgc
      241 ctcagctttg acgagatcca agtgctggcg cgggagccgg gcgtaaccat cggtgcgcac
      301 acgctcacgc atcccatact tgccaagcac gacgacgccg tggctcgccg cgagatcgtc
      361 gagggcaggc gcatgttgga agagcgcctc gcgatgccgg tgcgccatct cgcgtttccc
      421 ctgggcgacc gcgggtcggc aagctcgcgc gaattcaagc tcgccgccga ggcgggcttt
      481 gcgaccgccg tcacgacgcg ccccggccac ctcttcccgg cgcacctgga tcgcctgcat
      541 gccttgccgc ggatctcggt caacggcctg ttccagaccg atgcggcgct ctcggccctg
      601 ctctcgggcg tgccgttcct ggcctggaac cgcggccggg tcgcggctct cgagccctag
      661 cgccggcgcc ggtggtagga ccggcgcgtg ccgtagctcc ggccacccga gaccttggcg
      721 cgccgcactt cgcggggccc gccggtgacc accatgaacg tggcggtctg acgcccccga
      781 cgtccgcgca ccacgcgcgc acgcccacgg gacggcgtct ctgcaaccga tgtttccggg
      841 tcttgaccga tgccgacccg gggcgcgcgc tggccaacct tgggcccgaa cgacgccagg
      901 cactggttgt aggccatgtc gttcttgacc ttctcgcagt ccccgatgga ggtgggcgac
      961 tgtgctgcgg ccggtagtgg cgcaagcagc gtcagggcca cgagaagatg tttcatcatg
     1021 tctgcgggtg gctctcggtc gggcggggtc ggccctgata gaccgctcga ctgcgggtga
     1081 aaaggggccg ttggttcacc cttgcgggtc cgggcgctgc atccactgga ttagcggcat
     1141 caaaggcagc acccaggcaa tcccgagcac gacgtagacg acgagccgca cggcgttcga
     1201 cgcgtcttgg atacggctct ctgccagcgc catagcgagg agcgcgtaga tggccaggaa
     1261 cgcgatgctg agcagcgttc caacgagttt gcgggtacgg acgcgcatga accttccagg
     1321 cgggtgcggc agcgctgagc gttgccggag ggtggcgcgg cagcctatgt gatagccgct
     1381 ttcgctgttc aaggcctttc ggcctcctgc ggttccgtat ccatggctac cgtcgctgcc
     1441 caccccgctt tcgtgcccgc ctcccatcgc accgatgcga tgcgggcggt gcgcgtctgg
     1501 ctttacgtcc ttgcggcact cgtcgttgtc atggtggctg tcggcggagc aacccggctc
     1561 accggctccg gcctctcgat taccgagtgg cggcccgtca cgggcgcgat cccgcccttg
     1621 tcggaggcgg cctgggcggc cgagttcgag cgctacaagc agatacccca gtacgaactc
     1681 ctgaaccgcg gcatgaccct gcccgagttc aagcgcatct acgcctggga gtgggcacac
     1741 cggcagctcg ggcgcctcat cggcctcgtc ttcttcctgc cgcttgcctg gttctggtgg
     1801 cgcggtctcg tgagccggcg cctcgccctg aggcttgcag ccgtcggcgt gctcggcgcc
     1861 atgcaggcgg gcgttggctg gatcatggtc gcttcgggcc tcgagcccgg gatgacggct
     1921 gttgcgcccg tgaagctcgc cttgcacctg gtgctcgcga gcctgatcct ggcggccctc
     1981 gtctgggtcg cggcagggct gaggctgcac cctgccgcgg tattgccttc gggacgtacg
     2041 cgaggcgtgc tcgtggggct catcatggtc cagatcgcgc tcggcgggct cgtggccggc
     2101 tccaaagcgg gctggaccta caacacctgg ccgctgatgg acggcgcctt cataccgcct
     2161 tcgaacgtcc tgttctcgac ctcctcgctg atcgagaact tcgtcgacaa cctcgcgctc
     2221 gtgcagctca accatcggct catcgcgtat ctcgtcgtgg ccgtggcgct ctggcacgcg
     2281 gcgacggcga ggagccaggg cgcgctcgcc gtcgccgcga tggcggtcgc gcaggcgacg
     2341 ctcggggt
//
LOCUS       DASQWN010000604         2539 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_354880, whole genome shotgun sequence.
ACCESSION   DASQWN010000604 DASQWN010000000
VERSION     DASQWN010000604.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2539)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2539)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2539
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_354880"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(160..1161)
                     /locus_tag="VE686_11285"
     CDS             complement(160..1161)
                     /locus_tag="VE686_11285"
                     /inference="COORDINATES: protein motif:HMM:NF016292.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HYY85065.1"
                     /translation="MTGGTMKRRDFIRLAGAAVLMGPQQAFAQQPPVRRIGVMLTNAE
                     TDAEGRSRLDALRQGLQKLGWTEPRNIQFDVRWGLGSLERARPLAAELVAAKCDVIVA
                     NGTPSVAALRETKTTIPIVFAVVTDPVGAGFIKSPSRPGGNITGFSTFEPSMGIKWVE
                     LLKEATPGLERVGCITDPAFPGFATVLQEIETSAPKLGLAVSRLVLRDKSDDVESHIA
                     AFASRPNGALIVFPTAINSVERRRIFSLAERHRLPAIYPFRHYALDGGLMAYGFDPTD
                     LFLRSADYVDRILKGAKPADLPVQAPTQFDLVVNLTTAKALGLSLTPTLLARAETVD"
     gene            1322..2197
                     /gene="yghU"
                     /locus_tag="VE686_11290"
     CDS             1322..2197
                     /gene="yghU"
                     /locus_tag="VE686_11290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009734737.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_process: GO:0006749 - glutathione metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione-dependent disulfide-bond
                     oxidoreductase"
                     /protein_id="HYY85066.1"
                     /translation="MAASSDYTPPKVWTWDKESGGRFANINRPIAGPTHEKELPVGRH
                     PLQLYSLGTPNGVKVTVMLEELLAAGHTGAEYDAWLIRIRDGDQFGSGFVAVNPNAKI
                     PALMDRSGREPIRVFESGAILLHLAEKFGAFLPTQGEARAECLSWLFWQMGSAPYLGG
                     GFGHFYAYAPSKMEYPIDRFAMEVKRQLDVLDRRLAENEYVAGPEYTIADMAIWPWYG
                     ALAKGWVYDAAEFLSVQDYKNVQRWTEAVFARPAVKRGRMVNRTTGDPSEQLHERHDA
                     SDFETKTQDKIAATR"
     gene            complement(2386..>2539)
                     /locus_tag="VE686_11295"
     CDS             complement(2386..>2539)
                     /locus_tag="VE686_11295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015342995.1"
                     /note="YghU; B2989; one of eight putative glutathione
                     transferase proteins from E. coli; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="glutathione-dependent disulfide-bond
                     oxidoreductase"
                     /protein_id="HYY85067.1"
                     /translation="RWADTIHARPAAQRGRMVNRVQGDPSTQLHERHEASDFETKTQD
                     KIAAAG"
BASE COUNT          405 a          863 c          879 g          392 t
ORIGIN      
        1 gggtgggggg agagtcacct ttgtcggagc ttcggcgccg cgcatccgac ttgaggctcg
       61 gacactctcc ccccaccctc ggtcgggctc tcgcccgact cgatccctcc ccgcactcgc
      121 tgacgcgagc gggggaggga cgagtctgcc cgcgcgcgtt cagtcgaccg tttcagcgcg
      181 ggcgaggagc gtgggtgtga gggagaggcc cagggccttg gcggtcgtca ggttcacgac
      241 gaggtcgaac tgggtcggcg cctggacggg gagatcggcc ggcttcgccc ctttgaggat
      301 gcggtcgacg taatccgcgc tgcgcaggaa cagatcggtc ggatcgaagc cgtaggccat
      361 cagcccgccg tccagcgcgt agtggcggaa cggatagatc gccggcagcc ggtgacgctc
      421 ggccagggag aagatgcggc ggcgctcgac gctgttgatg gccgtcggga agacgatgag
      481 cgcaccgttc ggccttgagg cgaaggccgc aatgtggctt tccacatcgt ccgacttgtc
      541 gcgcaggaca agcctggaga ccgcgagccc aagcttgggc gcggacgtct cgatttcctg
      601 gagcacggtg gcgaagcctg ggaacgcggg gtcggtgatg cagccgaccc gttccagccc
      661 gggcgtcgcc tccttgagca actccaccca cttgatgccc atcgaaggct cgaaggtgct
      721 gaagcccgtg atgttgccgc cgggccgcga cgggctcttg atgaaaccgg ctccgaccgg
      781 gtccgtcacc accgcgaaga cgatcggaat ggtcgtcttc gtttcccgaa gagcggcgac
      841 agaaggcgtc ccgttcgcga cgatcacgtc gcactttgcg gccacgagct cggcggcgag
      901 ggggcgcgcc cgctcgagcg accccaagcc ccagcgtacg tcgaattgga tgttgcgggg
      961 ttcggtccac ccgagcttct gcaagccttg gcgcagggcg tcgaggcgag atcgcccctc
     1021 ggcgtcggtc tcggcgttcg tcagcatgac gccgatccgg cgtacgggag gctgctgggc
     1081 gaacgcctgc tgtggcccca tcagtacggc agcgcccgca agtcggatga agtcccgccg
     1141 cttcatggtc cccccggtca tctcggcacc acaggctacg acgggtaacg gtcgacgcga
     1201 aagagcgaac gtgacgccat gcggctggcg gcgaccaggc cggcatcccg cgccggagcc
     1261 gctggtgtaa gctccggcca tggcgtaccg aactcgccgc attgcgcctg gagcttgaac
     1321 gatggccgct tcatccgact acaccccgcc gaaagtctgg acctgggaca aggagagcgg
     1381 ggggcggttc gccaacatca accggccgat cgccgggccg acgcacgaga aggagctgcc
     1441 ggtcgggcgg catccgctgc agctctattc gctcggcacg ccgaacggcg tgaaggtcac
     1501 ggtgatgctc gaggagctgc ttgcggccgg ccatacgggc gccgaatacg acgcctggct
     1561 gatccgcatt cgcgatgggg accagttcgg gtcggggttc gtcgccgtga acccgaacgc
     1621 caagatcccg gcgctcatgg atcgcagcgg acgtgagccc atccgggtct tcgagtccgg
     1681 cgcgatcctc ctccatctcg ccgagaagtt cggggccttc ctcccgacgc agggcgaggc
     1741 gcgcgcggaa tgcctgtcgt ggctgttctg gcagatgggc agcgcgccct acctcggcgg
     1801 cggcttcggc catttctacg cctacgcgcc gagcaagatg gagtacccga tcgaccgctt
     1861 cgccatggag gtgaagcgcc agctcgacgt gctcgaccgg cgcctcgccg agaacgagta
     1921 cgtggccggg ccggagtaca ccatcgccga catggcgatc tggccctggt acggggcgct
     1981 cgccaaaggc tgggtctacg acgccgccga gttcctgtcc gtgcaggact acaagaacgt
     2041 gcagcgctgg accgaggccg tgttcgcccg tcctgccgtg aagcgcggcc gtatggtcaa
     2101 ccgcacgacc ggcgacccct ccgagcagct gcacgagcgc cacgacgcaa gcgacttcga
     2161 gacgaagacg caggacaaga tcgccgccac gcgctgagcg ccatccctcc ccgacgcgct
     2221 gagcgccatc cctccccgag aggggagggc ggagacgggc gcgtcagcgc ccgcccgggt
     2281 ggggcgaaaa ccacagtgct tcgtcggtca agctcagggc ttccgcccca ccccgctcgc
     2341 gcctgtacgc gcgagtcgcc ctcccctctg ggggagggat ggcgatcacc ccgcagccgc
     2401 gatcttgtcc tgcgtcttcg tctcgaagtc gctggcctcg tgccgctcat gcagctgcgt
     2461 cgagggatcg ccctgcaccc ggttcaccat ccggccgcgc tgcgccgccg gcctggcatg
     2521 gatcgtatcc gcccagcgg
//
LOCUS       DASQWN010000605         2675 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_961545, whole genome shotgun sequence.
ACCESSION   DASQWN010000605 DASQWN010000000
VERSION     DASQWN010000605.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2675)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2675)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2675
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_961545"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(128..595)
                     /locus_tag="VE686_11300"
     CDS             complement(128..595)
                     /locus_tag="VE686_11300"
                     /inference="COORDINATES: protein motif:HMM:NF013970.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system VapC family
                     toxin"
                     /protein_id="HYY85068.1"
                     /translation="MGDVVWERLIYLDANVFIDAYDGEEAVSDPAKSLLAHLRTRPAL
                     AVTSELSLAEVLADPEAKGDLRRKRAYLDLMVWSRFVTLVPITRDVLYLTAKLRAFHR
                     PKLKLLDAIHLATASEHRCGIFVSRDEGIQTPLGMRRMRADRDGAHAIIAALA"
     gene            complement(588..815)
                     /locus_tag="VE686_11305"
     CDS             complement(588..815)
                     /locus_tag="VE686_11305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011665158.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY85069.1"
                     /translation="MNKVVREHYPASKLPDDLREGIDPAKDVTVTVVEEDRPERVMSF
                     EEIFATRMPPYLTREEIDAHLRGLREDREDG"
     gene            complement(838..2025)
                     /locus_tag="VE686_11310"
     CDS             complement(838..2025)
                     /locus_tag="VE686_11310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012334142.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HYY85070.1"
                     /translation="MNDAPVVPELDRVPVASPAAAPLAPALPREGFVRLSPLNRRRLT
                     NFKANRRGYWSFWIFMVLFVVTLFAELLANDRPIVAQYKGELLFPIAVDYPEEKFGGF
                     LAETDYRDPVIAKEIEANGWMLWPPIRYAYNTNNRDLPVPAPAPPTWMLSDEQCRPMA
                     ERLGVEGCRGLEWNWLGTDDQGRDVVARLIYGFRISVLFGLILAGISSVIGIFAGAVQ
                     GYFGGWVDLAFQRVIEIWTAIPSLYLLIIVSSIITPSFFVLLGILLLFSWVSLVGVVR
                     AEFLRARNFEYVRAARALGLSNARIMVKHVLPNAMVATLTFLPFILNGSITTLTSLDF
                     LGFGLPPGSPSLGELLAQGKANLQAPWLGLTGFVVIAFMLSLLIFVGEAVRDAFDPRK
                     AFG"
     gene            complement(2030..>2675)
                     /locus_tag="VE686_11315"
     CDS             complement(2030..>2675)
                     /locus_tag="VE686_11315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016919262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="ABC transporter permease subunit"
                     /protein_id="HYY85071.1"
                     /translation="PLGIRKATKDGSPFDVWTSAVVIIGYAIPGFLFAILLIVLFAGG
                     SFWQIFPLRGLWSEDFADLSIGGKIVDYLWHIALPVTAMALGAFATSTLLTKNSFLDE
                     IRKQYVLTARMKGLSEHQVLYGHVFRNAMLIVVAGFPGAFIGAFFAGSLLIETIFSLD
                     GLGLLSFESIVNRDYPVVFANLYIFSLVGLVVNLVSDLTYTWIDPRIDFETRET"
BASE COUNT          534 a          812 c          928 g          401 t
ORIGIN      
        1 tcgccgacga tcgcgacggt ctcgccgggc atgacgtcga acgacacgcg gtccaccgca
       61 agcgcgtcgc gcccgccctg gcggaaggcg acggagaggt cctggaccga gacgaggggc
      121 gcggcagtca cgcgagcgcc gcgatgatcg cgtgggcgcc gtcccggtcc gcccgcatcc
      181 gccgcattcc aagcggagtc tggatgcctt cgtcgcgaga cacgaaaatg ccgcaccggt
      241 gctcgctggc cgtggccaag tgaattgcat ctaaaagctt gagcttaggg cggtggaatg
      301 cgcgcaactt cgccgtgagg tacagcacgt cccgggtgat cggaactagc gtcacgaacc
      361 ggctccagac catcaggtcc aagtatgcgc gcttccgcct gaggtcgccc ttcgcctctg
      421 gatcggcgag cacttccgcc aatgagagct cactagttac cgctagcgcc ggacgcgtcc
      481 ggagatgtgc cagcagggat ttcgcggggt ctgacaccgc ctcctcgcca tcataggcgt
      541 cgatgaagac attcgcatcc aagtagatga gccgttccca gacgacatca cccatcttcc
      601 cggtcttccc ggagacctct gagatgtgcg tcgatctcct cacgggtgag gtatgggggc
      661 atccgtgtgg cgaagatctc ctcgaagctc atgacgcgct ccggacggtc ctcctcgacc
      721 accgtgaccg tgacgtcctt cgctggatca atgccttcgc gcagatcgtc cggcagcttg
      781 cttgccgggt agtgctctcg aacaaccttg ttcatgcgtc tctccgaaga gcctatccta
      841 cccgaacgcc ttccgcgggt cgaacgcgtc gcggacggcc tcgccgacga agatgaggag
      901 gctgagcatg aaggcgatga cgacgaagcc cgtcaggccg agccagggcg cctgaaggtt
      961 ggccttgccc tgcgccagga gctcgccgag ggacggcgag ccggggggca gcccgaagcc
     1021 gagaaagtcg agggacgtga gcgtggtgat cgagccgttg aggatgaacg gcaggaaggt
     1081 cagcgtcgcc accatggcgt tgggaagcac gtgcttgacc atgatcctgg cgttcgagag
     1141 cccgagcgcg cgcgcggcgc ggacatattc gaaattgcgg gcgcgcagga actcggcccg
     1201 cacgacgccc acgagcgaca cccacgagaa gagcaggaga atcccgagca gcacgaagaa
     1261 gctcggagtg atgatcgagg aaacgatgat cagcaggtag agggacggga tggcggtcca
     1321 gatctcgatg acgcgctgga acgcgaggtc gacccagccg ccgaaatagc cctgcacggc
     1381 gccggcgaag atgccgatca ccgacgagat gccggcgagg atgagcccga acagcaccga
     1441 gatgcgaaag ccgtagatga ggcgcgcgac gacgtcgcgg ccctggtcgt cggtgccgag
     1501 ccagttccat tcgaggccgc ggcagccctc gacgccgagg cgctccgcca tggggcggca
     1561 ctgctcgtcc gagagcatcc acgtcggcgg ggcgggggcg ggaacgggca ggtcccggtt
     1621 gttggtgttg taggcgtagc ggatcggcgg ccacagcatc cagccgttcg cctcgatctc
     1681 cttggcgatc acgggatcgc ggtagtcggt ctcggcgagg aagccgccga acttctcctc
     1741 cgggtagtcg accgcgatgg ggaacaggag ctcgcccttg tactgcgcca cgatggggcg
     1801 gtcgttcgcc aggagttccg cgaacaacgt caccacgaac aggaccatga agatccagaa
     1861 tgaccagtag ccgcgacggt tggccttgaa gttcgtgagg cggcggcggt tgaggggcga
     1921 gaggcgcacg aagccttccc gcggcagcgc cggcgcaagc ggcgcggcag ccggcgaggc
     1981 gaccggcacc cggtcgagct caggaaccac aggagcgtcg ttcacgggct cacgtctccc
     2041 gtgtctcgaa gtcgatgcgg gggtcgatcc acgtgtaggt gaggtcggag acgaggttca
     2101 ccaccaggcc gacaagggag aagatgtaga ggtttgcgaa caccacggga tagtcgcggt
     2161 tcacgatcga ctcgaatgac aggagcccga gcccgtcgag ggagaagatg gtctcgatga
     2221 ggagcgagcc ggcgaagaag gcgccgatga aagcgccggg aaaacccgcc accacgatca
     2281 gcatcgcgtt gcggaagaca tgcccgtaga gcacctggtg ctcggagagg cccttcatcc
     2341 gcgcggtcag cacgtattgc ttgcggattt cgtcaaggaa ggagtttttg gtgagaagcg
     2401 tcgaggtcgc gaaggcgccg agcgccatgg cggtcaccgg cagggcgatg tgccagaggt
     2461 agtcgacgat cttgccccct atcgacaggt cggcgaagtc ctccgaccac aggccgcgta
     2521 aggggaatat ctgccagaac gagccgccgg cgaagagcac gatgagcagg atggcgaaca
     2581 ggaaacccgg aatagcgtag ccgatgatga ccaccgccga ggtccacacg tcgaagggcg
     2641 agccgtcctt ggtcgccttg cgaatgccga gcggg
//
LOCUS       DASQWN010000606         2872 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_264729, whole genome shotgun sequence.
ACCESSION   DASQWN010000606 DASQWN010000000
VERSION     DASQWN010000606.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2872)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2872)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2872
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_264729"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2150)
                     /gene="uvrB"
                     /locus_tag="VE686_11320"
     CDS             complement(<1..2150)
                     /gene="uvrB"
                     /locus_tag="VE686_11320"
                     /EC_number="3.1.25.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009494715.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009380 - excinuclease repair complex
                     [Evidence IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006289 - nucleotide-excision repair
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrB"
                     /protein_id="HYY85072.1"
                     /translation="MPKPPKKPKLSTGKATKPELKPLDEHLAALLNPALNRERAAEAG
                     FAERAQETYVHGEATDVDPGLAKKLGLRGPDDGPDVAEELGDLAPMSEGGVSATVEAL
                     TSLLTSGNPLFKDGKLWTPHRPERPQKSEGGIRFKIQSAFEPAGDQPAAITELVDGVR
                     RAERDQVLLGVTGSGKTFTMAKVIEETQRPALILAPNKTLAAQLYGEFKSFFPDNAVE
                     YFVSYYDYYQPEAYVPRSDTFIEKESSINEQIDRMRHSATRALLERDDVIIVASVSCI
                     YGIGSVETYTAMAFAVQVGERIEQRQLIADLVALQYKRIQNDFARGTFRVRGDTIELF
                     PAHLEDRAWRICLFGDEIESIVEFDPLTGSKTNDLKFVKVYANSHYVTPRPTLQQAIK
                     GIKEELRWRLTELTRMGRLLEAQRLEQRCTFDLEMIEATGACNGIENYSRYLTGRKPG
                     EPPPTLFEYLPDNALVFTDESHVTVPQIGGMYRGDFRRKATLAEYGFRLPSCMDNRPL
                     RFEEWDAMRPISVHVSATPGPWEMNQTGGVFVEQVIRPTGLVDPPVEVRPARSQVDDL
                     LGEVRETTAKGYRTLVTVLTKRMAEDLTEYLHENGIRVRYMHSDIDTIERIEIIRDLR
                     LGTFDVLVGINLLREGLDIPECAFVAILDADKEGFLRSETSLIQTIGRAARNVDGKVI
                     LYADQVTGSMQRAIEETNRRREKQLEYNKENGITP"
     gene            2754..>2872
                     /locus_tag="VE686_11325"
     CDS             2754..>2872
                     /locus_tag="VE686_11325"
                     /inference="COORDINATES: protein motif:HMM:NF013530.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent epimerase/dehydratase family
                     protein"
                     /protein_id="HYY85073.1"
                     /translation="MSGVLVTGGSGFFGSLLIQRLLDEGLDCVSIDLEPAHTR"
BASE COUNT          437 a          888 c         1036 g          511 t
ORIGIN      
        1 ggcgtgatgc cgttttcttt gttgtattcc agctgcttct cgcgccggcg gttggtctcc
       61 tcgatggcgc gctgcatcga gccggtgacc tggtcggcat agaggatgac cttgccgtcg
      121 acgttgcgcg ccgcccggcc gatcgtctgg atgagcgagg tctccgagcg caggaagccc
      181 tccttgtcgg cgtcgaggat cgccacgaag gcgcactcgg ggatgtcgag gccctcgcgc
      241 aggaggttga tgccgacgag gacgtcgaag gtgccgaggc gcaggtcgcg gatgatctcg
      301 atgcgctcga tggtatcgat gtccgagtgc atgtagcgca cccggatgcc gttctcgtgc
      361 aggtactcgg tgaggtcctc ggccatgcgc ttggtcagga ccgtgacgag ggtgcgatag
      421 cccttggcgg tggtctcgcg cacctcgccg aggaggtcgt cgacctggct gcgcgcgggg
      481 cgcacctcga caggcgggtc gacgaggccg gtcgggcgga tgacctgctc gacgaagacg
      541 ccgccggtct ggttcatctc ccacgggccg ggcgtcgccg agacgtggac cgagatcggc
      601 cgcatcgcgt cccactcctc gaagcgcagg ggccggttgt ccatgcacga gggcaggcgg
      661 aagccgtact cggcgagcgt cgccttgcga cggaagtcgc cacggtacat gccgccgatc
      721 tgcggcacgg tgacgtggct ctcgtcggtg aagaccaggg cgttgtcggg caggtactcg
      781 aacaaggtcg gcggcggctc gccaggcttc cgcccggtga ggtagcgcga gtagttctcg
      841 atgccgttgc acgcgcccgt ggcctcgatc atctcgaggt cgaaggtgca gcgctgctcg
      901 agccgctgcg cctcgaggag ccggcccatc cgggtgagct cggtcaggcg ccagcgcagc
      961 tcctccttga tgcccttgat ggcctgctgc agcgttggcc gcggcgtcac gtagtgggag
     1021 ttggcataga ccttcacgaa cttgaggtcg ttggtcttgg acccggtcag cgggtcgaac
     1081 tcgacaatgg actcgatctc gtcgccgaag aggcaaatgc gccaggcgcg gtcctccaag
     1141 tgggccggga agagctcgat cgtgtcgccc cggacccgga aggtgccgcg cgcgaagtcg
     1201 ttctggatgc gcttgtactg gagggccacg aggtcggcga tcagctgccg ctgctcgatg
     1261 cgctccccga cctgcacggc gaaagccata gccgtatagg tctcgaccga gccgataccg
     1321 tagatgcagg agacggaggc cacgatgatc acatcgtcgc gctcgagcag cgcccgcgtg
     1381 gcggagtggc gcatgcggtc gatttgctcg ttgatggacg attccttctc gatgaaggtg
     1441 tccgagcgcg ggacataggc ctccggctgg tagtagtcgt agtaggagac gaaatactcg
     1501 acggcgttgt cggggaagaa gctcttgaac tcgccgtaga gctgcgccgc gagcgtcttg
     1561 ttgggcgcga ggatgagcgc cgggcgctgc gtctcctcga tgaccttggc catggtgaag
     1621 gtcttgcccg aacccgtgac ccccagcagc acctggtcgc gctcggcccg gcgcacgcca
     1681 tcgaccagtt ccgtgatggc ggcgggctgg tcgcccgcgg gctcgaacgc cgactggatc
     1741 ttgaagcgga tgccgccttc ggacttctgc ggccgctcgg gccggtgggg cgtccagagc
     1801 ttgccgtcct tgaacagcgg gttgccgctg gtcaggaggc tggtgagcgc ctcgacggtg
     1861 gccgacacgc cgccttcgct catgggagcg aggtcgccga gctcctccgc cacgtccggc
     1921 ccgtcatcgg gcccgcgcag cccgagcttc ttggcgagcc cgggatcgac gtccgtcgcc
     1981 tcgccgtgaa cgtaggtctc ctgcgcccgc tcggcgaaac ccgcctcggc ggcgcgctcg
     2041 cggttgaggg cagggttgag cagggccgcg agatgctcgt cgagcggctt cagctcaggc
     2101 ttcgtcgcct tgccggtgga cagcttgggc tttttgggag gtttcggcac cgggccaata
     2161 tggtgcgagt ctgcgcaggg cggaaggcga ccgtcgggcg cgggcggctg ggcgcagcgc
     2221 atcgtcgtca tcgtcggccg gggccggcgt ggccgacgat accgggtaaa atgccgacga
     2281 tgccggaaaa accccgggcg gcccgccgac gatgccggga agatgacgac atccgcgacg
     2341 atgacgacgt gatcatctgt ggcctcgacg gcgtccgagc gaccacgccg gcaaccgaaa
     2401 aggcctgttc atcgtggcgt catcattggc gaccccgccg gcgcggggcc gttctggctg
     2461 cgcttgagcc ggccgtctcg atggcggggg ggggcggagt ggttgagctt gcgcgggctc
     2521 cccaagatga cccgcatcat cttgatcatg gtcgcccgag ggcagcttcg gtctttggag
     2581 cctcggcatg gcggaaatat cgggcgagtc cttcaagggg tgaaagccgc agcctctcgc
     2641 gtggggcaaa tgcggcaaga attctctaag aggttgtacc ccataaaccg aatcgctcgg
     2701 ctaatggcca gcaccactgg cggcagcccc gccgcgctta cggggaagcg acgatgtcgg
     2761 gagttcttgt caccgggggc agcgggtttt tcggcagctt gttgatccag cgtctgctcg
     2821 acgaaggact ggactgcgtc tctatcgacc tcgaaccggc gcacacgagg ca
//
LOCUS       DASQWN010000607         2676 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_465118, whole genome shotgun sequence.
ACCESSION   DASQWN010000607 DASQWN010000000
VERSION     DASQWN010000607.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2676)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2676)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2676
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_465118"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..129
                     /locus_tag="VE686_11330"
     CDS             <1..129
                     /locus_tag="VE686_11330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009763122.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016627 - oxidoreductase activity, acting
                     on the CH-CH group of donors [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase family protein"
                     /protein_id="HYY85074.1"
                     /translation="YGIEKIVRDLRVHQILEGTNEIMRLIVARSLLGRGNRGGTVV"
     gene            231..1205
                     /locus_tag="VE686_11335"
     CDS             231..1205
                     /locus_tag="VE686_11335"
                     /inference="COORDINATES: protein motif:HMM:NF016292.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HYY85075.1"
                     /translation="MRRREFIALLGAAPLAATEHAHGRGTRRVGFLHPGSHAAVSMRA
                     AAFKEGLSPPSSPDGRGDIEVVMRVADGDPDRLPGMAEELVAAGVDAMLAVSPTAVRA
                     AAAATRSVPIIAVDLESDPVANGWASSLARPGGNISGVFLDLPEVSAKCLQLLGETVP
                     SLRKVGIIWDVATGSVALRAVEIATAPLNIATEIFPIRRLADVPLAFEAAQQARLGGM
                     MMLSSPIIGGNPKYLAELTVARRLPTVTLFPEFAQMGGLLAYGPDLQGLFRQGAVLLR
                     KALDGARPAELPIQRPERFQLVANVRTAKALGLEFPGAILIRADEVIE"
     gene            1222..1662
                     /locus_tag="VE686_11340"
     CDS             1222..1662
                     /locus_tag="VE686_11340"
                     /inference="COORDINATES: protein motif:HMM:NF025453.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4267 domain-containing protein"
                     /protein_id="HYY85076.1"
                     /translation="MNGAQTGGTGALMGIEDFRSWLVIAPAIGLVLLGVALVASPALG
                     AAIFGLPLPPGSAAGYVPAIGVRDIAFGLYILALPWFSSRRAVGIVLGLTALIPVGDI
                     LVLVVHTGLSSPWHLALHGVSGLYMAAAAAWVLGTDRGRKGAST"
     gene            1659..2549
                     /gene="mmsB"
                     /locus_tag="VE686_11345"
     CDS             1659..2549
                     /gene="mmsB"
                     /locus_tag="VE686_11345"
                     /EC_number="1.1.1.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019404824.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008442 - 3-hydroxyisobutyrate
                     dehydrogenase activity [Evidence IEA];
                     GO_process: GO:0006574 - valine catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-hydroxyisobutyrate dehydrogenase"
                     /protein_id="HYY85077.1"
                     /translation="MTTIAFIGLGNMGGPMAANLVTAGHRVIGFDLSPELREATRAQG
                     AEAAGSAREAVAKAEIVITMLPAGKHVLSVWGDIVASLKPGTLVIDSSTIDVESATRA
                     HALANERGCRSLDAPVSGGVGGARGATLTFMCGGSAEAFAGAEPILSRMGKRVVHCGD
                     AGAGQAAKICNNMILGISMIGVCEAFVLAEKLGLSHQALFDVASTSSGQCWSLTSYCP
                     VPGPVPTSPANSGYQPGFASALMLKDLKLAQEAAAASGATTPLGAAAAQIYGLHNAWG
                     EGGMDFSAIIHLIRGRAGQA"
BASE COUNT          373 a          926 c          924 g          453 t
ORIGIN      
        1 tacggcatcg agaagatcgt tcgcgacctg cgcgtacatc aaatcctcga ggggaccaac
       61 gagatcatgc gcctcatcgt ggcgcgcagc ctgctcggac gcgggaaccg cggcggcacc
      121 gtcgtctgac gaggctgagc gccggctcat gccacctctc ctggaggcat gtactggcgg
      181 cccgcttttc gcataggctg gccgttaggc gtccgcggcg agctcacccc atgagacgac
      241 gagagttcat cgcgctgctc ggtgcggcgc cgcttgccgc caccgagcat gcccatggcc
      301 gcggcacgcg gcgggtcggc tttcttcatc ccggaagcca tgccgccgtt agcatgcggg
      361 cggctgcatt caaggagggg ctctcgccgc cgtcgagccc tgacggccgg ggggatatcg
      421 aggtcgtaat gcgggttgcc gacggggatc ccgaccggct gccgggcatg gccgaggaac
      481 tcgtggcggc cggcgttgac gcaatgctag ccgtcagccc cacagccgtg cgggcagccg
      541 ccgcggcgac gcgctctgtc ccgatcatag cggtcgatct ggaatcggac cccgtcgcga
      601 acggctgggc atcgagcctt gcgaggcctg gcggcaacat cagtggcgtg ttcctcgacc
      661 ttcccgaggt tagcgccaaa tgccttcagc tcctcgggga gaccgttccg tccctgagga
      721 aggtcgggat tatctgggac gtggccaccg gctccgtcgc gttgcgtgcg gtcgagatcg
      781 caaccgcgcc tctcaacatt gcgacggaga tattcccgat taggcggctc gccgatgtcc
      841 cgttggcgtt cgaggcggcg cagcaggcgc gcctcggggg gatgatgatg ctttcctcgc
      901 cgatcatcgg cggcaacccg aagtacttgg ccgagctcac ggtcgcgcgg cgccttccga
      961 ccgtgacgct ctttcccgag ttcgcccaga tgggcggcct gttggcgtac ggaccggacc
     1021 tgcagggctt gttccgccag ggtgcggtcc ttcttcgcaa ggcgcttgac ggcgcacgcc
     1081 cggcggagct gccgatccag cgccccgagc gatttcagct cgtggccaac gtcagaaccg
     1141 cgaaagcgct tgggctcgag ttcccgggcg cgatcctcat tcgggcagac gaggtgatcg
     1201 agtgacgcgc cgggaccatc agtgaacggc gcacagaccg gtgggacggg ggcgctcatg
     1261 ggcatcgagg actttcgcag ctggctcgtc atcgcgccgg ccatcggcct tgtgctgctc
     1321 ggggtcgcgc tcgtggcctc gccggcgctc ggggccgcca tcttcgggct gccgctgccg
     1381 cctggttcgg cggccggcta cgtgcccgcg atcggggtgc gcgacatcgc cttcggcctc
     1441 tacattctcg cgcttccgtg gttctccagc cggcgcgccg tcggcatcgt gctgggcctc
     1501 accgccctga ttcccgtggg cgacatcctg gtgctggtcg tgcacaccgg cttatcctcg
     1561 ccctggcatc ttgccctcca tggcgtgagc gggctgtaca tggctgccgc cgccgcctgg
     1621 gtgctcggga cggaccgcgg ccgcaaggga gcaagcacat gacgacgatc gcgttcatcg
     1681 gccttggcaa catgggcggg ccgatggccg ccaacctcgt gacggcgggg cacagagtga
     1741 tcggattcga tctctcgccg gagcttcgcg aggcgacgcg ggctcaaggc gccgaagcag
     1801 ccgggtctgc ccgcgaggca gtagcgaaag ccgagatcgt gatcaccatg ctcccggccg
     1861 gcaagcacgt gctctcggtg tggggcgaca tcgtcgcgtc cctgaaaccc gggaccctcg
     1921 tgatcgattc ctcgaccatc gacgtcgaga gcgccacgag ggcgcacgcc ctcgcaaacg
     1981 aacggggctg ccgctctctc gacgcaccgg tctcgggcgg cgtgggcggc gcccgcggcg
     2041 ccaccctgac gttcatgtgc ggcggctcgg cggaggcttt cgcgggcgcg gagccgatcc
     2101 tctcccgcat gggcaagcgg gtcgtgcatt gcggcgacgc cggcgcgggc caggccgcga
     2161 agatctgcaa caacatgatc cttggcattt cgatgatcgg ggtctgcgag gccttcgtgc
     2221 tggcggagaa gctcggcctc tcgcaccagg cgctgttcga cgtcgcctcg acctcctcgg
     2281 gccagtgctg gtcgcttacg agctactgcc ccgtccccgg gccggtaccc acgtcgccgg
     2341 cgaactccgg ctaccagccc gggtttgctt ccgcgctgat gctcaaggat ctcaagctcg
     2401 cgcaggaggc ggccgccgcg tcaggcgcga cgaccccgct cggcgccgcg gcggcgcaga
     2461 tctacggcct ccataacgcc tggggcgagg gcggcatgga cttctcggcc atcattcacc
     2521 tcatccgagg ccgcgccggc caagcctagc cggccgattg ccgggcctga gtgttgcaaa
     2581 cgccctacag cgccggggtc gtgcctccgg tacggtgcgg ggcagccgtc ccgaagatcg
     2641 cccgtgtccc gttcagcgtc catggcccgc gcgcct
//
LOCUS       DASQWN010000608         2554 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_862374, whole genome shotgun sequence.
ACCESSION   DASQWN010000608 DASQWN010000000
VERSION     DASQWN010000608.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2554)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2554)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2554
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_862374"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..673
                     /locus_tag="VE686_11350"
     CDS             <1..673
                     /locus_tag="VE686_11350"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY85078.1"
                     /translation="ALAYLADPKEAERARSRPLPARPPLALTAPAASWQPMPNAPALF
                     ALDAPLLKGQAALVEVRVTRRGGREDLLDFGTLADAAAPFVRLVVTRSSGDAAPPSSL
                     FVGLVRRAAEAGMAVTRSAPGASLATKFGAFEATPIALGVDVPRACIGFRGQHADVAF
                     RVLGWFCGGAAAPAMREALVCVIDGLELTSAAADPALKAVFAQAERRRECRDLRVVET
                     AKRSA"
     gene            complement(900..1268)
                     /locus_tag="VE686_11355"
     CDS             complement(900..1268)
                     /locus_tag="VE686_11355"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY85079.1"
                     /translation="MGHVSWRAAALAFAVGMCAVPALAQAPAFAPRDEQVEDLPAGRG
                     REETFGLCAACHNFRLVSAQGMSRARWDETMTWMTVRHGMPDIQGEDRDVILDYLATH
                     YPPRAPSGPAGGWRNPFAPQ"
     gene            complement(1279..>2554)
                     /locus_tag="VE686_11360"
     CDS             complement(1279..>2554)
                     /locus_tag="VE686_11360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012563427.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="sulfite oxidase"
                     /protein_id="HYY85080.1"
                     /translation="RRGFLNGAGLAAVGAAVGSTIPFSDKMPAGLIPAAIAQGAAPPP
                     AGGGQPPATAPKGPQPLDFPGKERGLVVLGDRPLVAETPEHLLDDDTTPTSKFFVRNN
                     GQIPEPAANADGWKIAIDGEVNSKLELTLAELKSRFPQKTYRMVLECGGNGRSAFQPQ
                     ARGNQWTNGGAGCAEWTGVPLADVLKAAGLKSSAVYTGHYGTDPHLSGDTTKESISRG
                     MPIAKAMEEHNLIVFAMNGEPLPNIHGGPVRLVVPGWPGSLSHKWLNRITLRDKEHDG
                     SGMTGTSYRVPITPMIPGGKADEKNFRILESMPVRGIVTSPANGARLPAGTRELPLRG
                     AAWAGDLTVSRVDVSTDFGATWTAATVSAPKNRYDWHRWTARAPVPSDGYYEVWVRAT
                     DSNGRMQPHVAGGWNPQGYGGNAMHRIAVLVG"
BASE COUNT          308 a          918 c          945 g          383 t
ORIGIN      
        1 ggccctggcg tatctcgcgg acccaaagga ggcggagcgt gcgcggagcc ggcccctgcc
       61 ggcgcgccct ccgcttgccc tgactgctcc cgcggcatcg tggcagccga tgccgaacgc
      121 tcctgcgttg ttcgcccttg atgctccgct gttgaaaggg caggccgccc tcgtcgaggt
      181 ccgcgtgacg cggcgcgggg gccgcgagga cctcctggac ttcggaactc tcgccgatgc
      241 ggcggccccc ttcgtccgcc tcgtcgtcac ccgcagttcc ggcgacgcag cgccgccgtc
      301 gagcctcttc gtcggtctcg tccggcgcgc ggccgaggcc gggatggcgg tcacgcgcag
      361 cgccccgggc gcgtcgctcg ccaccaagtt cggagccttc gaggcgacgc cgatcgcctt
      421 gggcgtcgac gtcccgcggg cgtgcatcgg cttccgcggc cagcacgcgg acgtggcgtt
      481 ccgggtgctc gggtggttct gcggcggggc ggccgcgccc gcgatgcggg aagccctggt
      541 gtgcgtcatc gacggcctgg agctcaccag cgcggcggcc gacccagcct tgaaagcggt
      601 gttcgcgcag gccgagcgcc gccgcgaatg ccgcgacctg cgcgtggtcg aaaccgcaaa
      661 gcgctcggcg tagcccggcc gaggctgcgg cgacggtacc ggcacgcgtg atcctccccc
      721 gcgcagcggg ggagggggac cgccgaaggc ggtggagggg gcaagccgcc ggctccggcc
      781 tgcatcgtcc tgcaccgatc cgccgatcga ggcgacgaag atctcaccaa gtcgcgcccc
      841 ctccaccatg cttcgcatgg tcccactccc ccgcgtgcgg gggaggatca ctcacgccgc
      901 tactgcggcg cgaaggggtt gcgccagccg cccgcggggc ccgagggcgc gcgcggcgga
      961 tagtgcgtcg cgaggtagtc gaggatgacg tcgcggtcct cgccctggat gtcgggcatg
     1021 ccatggcgca cggtcatcca ggtcatcgtc tcgtcccagc gcgcgcggct catgccttgc
     1081 gccgagacga gccggaagtt gtggcacgcc gcgcagaggc cgaacgtctc ctccctgccg
     1141 cgcccggccg gaaggtcctc cacctgctcg tcgcgaggcg cgaacgccgg cgcctgcgcc
     1201 agggccggca cggcgcacat cccgaccgcg aaggcgagcg ctgccgcccg ccagctcaca
     1261 tgccccatcg cgcccctctc agccgacgag cacggcgatg cggtgcatgg cgttgccgcc
     1321 gtagccctgc gggttccagc cgccggcgac gtggggctgc atgcggccgt tcgagtccgt
     1381 cgcgcgcacc cagacctcgt agtagccgtc cgacggcacc ggcgccctcg cggtccagcg
     1441 gtgccagtcg tagcggttct tcggcgccga caccgtcgcg gccgtccacg tcgcgccgaa
     1501 gtccgtcgag acgtcgaccc gcgacacggt caggtcgccc gcccaggccg cgcctcgcaa
     1561 ggggagctcg cgcgtgccgg cagggagcct cgcgccgttc gccgggctcg tgacgatgcc
     1621 gcgcacgggc atcgattcga ggatgcggaa gttcttctcg tcggccttgc cgcccgggat
     1681 catgggggtg atcggcacgc ggtacgacgt ccccgtcatg cctgagccgt cgtgctcctt
     1741 gtcgcgcagg gtgatgcggt tcagccactt gtgcgacagg gagcccggcc agcccggcac
     1801 gacgagccgc acggggccgc cgtggatgtt cggcaggggc tcgccgttca tggcgaagac
     1861 gatgaggttg tgctcctcca tcgccttggc gatgggcatg ccgcgcgaga tcgattcctt
     1921 ggtcgtgtcg ccggagaggt gcgggtcggt gccgtagtgg ccggtgtaca ccgccgagga
     1981 cttgaggccg gccgccttga gcacgtcggc caaggggacg ccggtccact cggcgcagcc
     2041 ggcgccgccg ttggtccact ggttgccgcg cgcctgcggc tggaacgcgc tgcggccgtt
     2101 gccgccgcac tcgagaacca tgcggtaggt cttctgcggg aagcggctct tcaactcggc
     2161 aagggtgagc tcgagcttgc tgttgacctc gccgtcgatg gcgatcttcc acccgtccgc
     2221 gtttgcggcg ggttccggga tctgaccgtt gttgcggacg aagaatttcg aggtcggcgt
     2281 ggtgtcgtcg tcgaggaggt gctccggggt ttcggccacg aggggacggt cgccgagcac
     2341 aacgaggccg cgctccttgc cgggaaagtc gaggggctgc ggccccttcg gcgctgtcgc
     2401 gggcggctgt ccgccgccgg ccggcggcgg cgcggcgccc tgcgctatgg cggccgggat
     2461 gaggccggcc ggcatcttgt ccgagaacgg gatggtgctc ccgaccgccg cgcccactgc
     2521 ggcgaggccc gcgccgttca ggaagccccg gcgg
//
LOCUS       DASQWN010000609         3869 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_158351, whole genome shotgun sequence.
ACCESSION   DASQWN010000609 DASQWN010000000
VERSION     DASQWN010000609.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 3869)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3869)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3869
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_158351"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..421
                     /locus_tag="VE686_11365"
     CDS             <1..421
                     /locus_tag="VE686_11365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012254337.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016151 - nickel cation binding [Evidence
                     IEA];
                     GO_process: GO:0006807 - nitrogen compound metabolic
                     process [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="urease accessory UreF family protein"
                     /protein_id="HYY85081.1"
                     /translation="LAPSRELRLETSQQGRSFLEATLAAWPAPALADLASALPAEVAY
                     PVAVGASSAAHCVPLEPTVEGYLLALVQNLVSAAVRLAPIGQTGGTRVVAGLAPAVSA
                     LAAAVPELTLDDIGGATFRADLGSFLHETQYTRLFRS"
     gene            418..1044
                     /gene="ureG"
                     /locus_tag="VE686_11370"
     CDS             418..1044
                     /gene="ureG"
                     /locus_tag="VE686_11370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009764206.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016530 - metallochaperone activity
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0019627 - urea metabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="urease accessory protein UreG"
                     /protein_id="HYY85082.1"
                     /translation="MTRSTNGPLRVGIGGPVGSGKTALMEALCRAFRDRYDLCAITND
                     IYTKEDARLLTVAGALPEERIVGVETGGCPHTAIREDASINLAAIGDMRRRFPQLDLI
                     LIESGGDNLAATFSPELADLTIYVIDVSGGDKIPRKGGPGITKSDLLVINKIDLAPLV
                     GADLSVMDADTKRMRGQRPYVFTNLREGTGAEAVARFIERTGGLAGAA"
     gene            complement(1059..2027)
                     /locus_tag="VE686_11375"
     CDS             complement(1059..2027)
                     /locus_tag="VE686_11375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018454257.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerophosphodiester phosphodiesterase"
                     /protein_id="HYY85083.1"
                     /translation="MTRAAGALATGAAVWLASVVSAAAFDLQGHRGARGLAPENTLPA
                     FAKALSIGVTTLELDVGMTKDGVLVVAHDPRLNPNFARLDGAFLETSGPALRELTLAE
                     VKRYDVGRLKPGSQYAKAFPDQMPVDGTAIPTLAEVLELARASPVGFNIETKITPTSS
                     DETPDPETFVRAIVQTAREAGVLDRITIQSFDWRTLKAASTIAPEVPRVCLTAELRAL
                     DNVQKDNPGGSPWTAGLKASEFGGSTPALVKAAGCSTWSPHFSNVTQASLADAKAAGL
                     VVVPWTVNELSVAERLIGWGVDGLITDYPDRVRKLLADKGVTVRTK"
     gene            complement(2053..3192)
                     /gene="tgt"
                     /locus_tag="VE686_11380"
     CDS             complement(2053..3192)
                     /gene="tgt"
                     /locus_tag="VE686_11380"
                     /EC_number="2.4.2.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012335216.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0008479 - tRNA-guanosine(34) queuine
                     transglycosylase activity [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA guanosine(34) transglycosylase Tgt"
                     /protein_id="HYY85084.1"
                     /translation="MTESFTFNVTGTDGAARSGEIRMPRGVIRTPAFMPVGTAATVKA
                     MYPEQVKALGADVVLGNTYHLMLRPGAERVARLGGLHAFMNWPFPILTDSGGFQVMSL
                     APLRKLDETGVTFQSHIDGSTHVLTPERSIEIQGLLGADIQMQLDECVRLPASDDLVE
                     KAMRLSLRWAERCRVAFGEQPGRALFGIVQGGAVERLRVESARELVALDLKGYAIGGL
                     AVGEPQDVMLRMIEATEPHLPRDKPRYLMGVGTPDDIVEAVRRGIDMFDCVMPTRAGR
                     HGTAYTRHGRLNLKNAKHADDPVPLDAASKAIAANTYSKAYLHHLVRSNEILGMMLLT
                     WNNLAYYQDLMAGLRKAVAEGRLDDFIGETKQGWARGERDGADGS"
     gene            3292..>3869
                     /locus_tag="VE686_11385"
     CDS             3292..>3869
                     /locus_tag="VE686_11385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015952339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4336 domain-containing protein"
                     /protein_id="HYY85085.1"
                     /translation="MAPSSDDRVVYAPIDVLKPAAEDLFIVDSGPLRIMGLPLPVRMS
                     VIRLANGDVLMHSPTRFDARLKAEIEAIGPIRHLVAPNIAHWSFLQDWQRECPQATTW
                     AAPGLRQRSQVKASGVRLDRDLPDASPPEWAGDIEQAIIPGAAGFREVAFFHRPSRTL
                     VLTDLIVNLEPGKLPLAARAFAWATGTLAPDG"
BASE COUNT          578 a         1384 c         1285 g          622 t
ORIGIN      
        1 gctcgccccc tcgcgcgagc tgcggctcga gacgagccag cagggccgca gcttcctcga
       61 ggcgacactt gcggcttggc ccgcacccgc cctggcagac ctggcgtcgg ccctgccggc
      121 tgaggtcgcg taccctgtcg ccgtcggcgc ctcttcggcg gcccactgcg tgccgctcga
      181 gccgacagtc gaggggtatc tgctcgccct ggtccagaat ctcgtctccg ccgccgtgcg
      241 gctcgcgccc atcgggcaga ccggcgggac ccgcgtcgtc gcgggactcg cgcccgccgt
      301 ctcggcgctt gccgccgctg tcccggagct cacgctcgac gacatcgggg gcgcgacgtt
      361 ccgtgccgac ctcggctcgt tcctgcacga aacccagtac acgaggctgt ttcgctcatg
      421 acgcgttcca cgaatggccc gcttcgggtc ggcatcggcg gcccggtcgg gtccggcaag
      481 acggccctca tggaagccct gtgccgggcc ttccgcgacc gctacgacct ttgcgctatc
      541 accaacgaca tctacaccaa ggaggacgcg cgcctcctca cggtggctgg ggccctgccc
      601 gaagagcgca tcgtcggcgt ggagacaggg ggctgccccc acacggcgat ccgcgaggac
      661 gcgtccatca atctcgcggc catcggcgac atgcgccgtc gtttcccgca gctcgatctg
      721 atcctgatcg agtccggcgg cgacaacctc gccgccacct tctcgccgga actcgccgac
      781 ctcacgatct acgtcatcga cgtctccggc ggcgacaaga tcccccgcaa gggcggcccc
      841 ggcatcacca agtcggacct cctcgtcatc aacaagatcg acctcgcgcc cctcgtcggg
      901 gccgacctct cggtgatgga tgcggacacc aagcgcatgc gcgggcagcg cccttacgtc
      961 ttcaccaacc tgcgcgaggg caccggcgcc gaggccgtcg cgcgcttcat cgaacgaacg
     1021 ggcggtctcg cgggagcggc gtaggggcgg catcgtccct atttcgtccg aacggttacg
     1081 cccttgtccg ccaggagctt gcgcacccgg tccggatagt cggtgatgag cccgtccacg
     1141 ccccagccga tcaggcgctc ggccacgctc aattcgttga cggtccacgg cacgacgacg
     1201 agccccgctg ccttcgcgtc ggcgaggctc gcctgcgtca cgttcgagaa atggggcgac
     1261 cacgtgctgc aacccgctgc cttgacgagc gcaggcgtgg agccgccgaa ctcggacgcc
     1321 ttcaggcctg ccgtccacgg tgagccgcct gggttatcct tctggacatt atcgagcgcc
     1381 cgcagctcgg ccgtgagaca cacgcgcggc acctcgggcg cgatcgtgct cgccgccttg
     1441 agcgtccgcc agtcgaagga ctggatggtg atccggtcga gaacgcccgc ctctcgcgcc
     1501 gtctggacga tggcgcggac gaaggtttca ggatcggggg tctcatcact cgaagtcggc
     1561 gtgatcttcg tctcgatgtt gaacccgacg ggagacgccc tggcgagttc caagacctcc
     1621 gccagggtcg gaattgcggt cccgtcgacc ggcatctggt cggggaaggc cttcgcgtat
     1681 tgcgagcccg gcttaagtcg accgacgtcg tagcgcttca cctcggcaag cgtcagctcc
     1741 cgcagcgcgg gcccgctggt ctcgagaaag gcgccgtcga ggcgggcgaa gttcggattc
     1801 agccgggggt catgcgcgac gacgaggact ccgtcctttg tcatcccgac gtcaagctcg
     1861 agcgtcgtca ccccgatgct gagggctttc gcgaaagcgg gcagcgtgtt ctcgggcgca
     1921 agcccccgcg cgccccggtg gccctgaaga tcgaacgcag ccgccgacac gacgcttgcg
     1981 agccaaaccg ccgcgccggt ggctaatgcg cccgctgctc gagtcatgtg cgtccctccg
     2041 gcaaagggca aatcacgatc catccgcgcc gtcgcgctcg ccgcgcgccc agccttgctt
     2101 ggtctccccg atgaagtcat cgagacgccc ctcggccacg gccttgcgca agcccgccat
     2161 gaggtcctgg tagtatgcga ggttgttcca ggtgagcagc atcatgccga ggatctcgtt
     2221 cgagcgcacg agatggtgga ggtaggcctt cgagtaggta tttgccgcga tcgcttttga
     2281 tgcagcgtcc agcggcaccg gatcatcggc atgcttggcg ttcttgaggt tgagccggcc
     2341 gtggcgcgtg taggccgtgc cgtggcggcc ggcccgggtc ggcatgacgc agtcgaacat
     2401 gtcgatgccg cgccggaccg cctcgacgat gtcgtcgggc gtgccgactc ccatgaggta
     2461 gcgcggcttg tcgcgcggca gatgcggctc cgtcgcctcg atcatccgca gcatgacgtc
     2521 ctgcggctcc ccgacggcga ggccgccgat cgcgtaaccc ttgaggtcga gcgccacgag
     2581 ctcgcgcgcg ctctcgacgc gcaggcgctc gacggcgccc ccctgaacga tgccgaacag
     2641 cgccctcccc ggctgctcgc cgaaggcgac gcggcagcgc tcggcccacc gcaggctcag
     2701 acgcatcgcc ttctcgacga ggtcgtcgga ggcaggcagc cgcacgcact cgtcaagctg
     2761 catctggatg tcggcgccga gcaggccctg gatctcgatc gaccgttccg gggtgagcac
     2821 atgcgtcgag ccgtcgatgt gcgactggaa ggtgacaccg gtctcgtcga gcttgcgcaa
     2881 gggcgcgagc gacatgacct ggaagccgcc cgagtccgtc aggatcggga acggccagtt
     2941 catgaacgcg tgcaagcccc cgagcctcgc gacgcgctcg gctcccgggc gcagcatgag
     3001 gtggtaagtg ttgccgagga cgacgtcggc acccagcgcc ttcacctgct ccgggtacat
     3061 ggccttgacc gtcgcggcgg tgccgacggg catgaacgca ggggtgcgga ttactccgcg
     3121 cggcatgcgg atctcgccgc tgcgcgccgc tccgtccgtg cccgtcacat tgaaagtgaa
     3181 gctttcggtc atcgcagcgc cttagagagg cgccgcctgg catgcaacct cgcgcgcgcc
     3241 gtgccgtttg tcggctacgg ccgtgcgggg ccgcgcaatg aggaggatgc cgtggcgcca
     3301 tcgagcgacg atcgggtcgt ctacgctccc atcgacgtcc tcaagcccgc ggcggaggac
     3361 ctcttcatcg tcgacagcgg cccattgcgg atcatgggcc tgccgctccc ggttcgcatg
     3421 tcggtgatcc ggctggcgaa tggcgacgtg ctgatgcact cgccgacgcg gttcgacgcc
     3481 cgactcaagg cagagatcga ggcgatcggc ccgatccgcc acctcgtcgc gcccaacatc
     3541 gcccactgga gcttcctcca ggactggcag cgggaatgcc ctcaggcaac gacctgggcc
     3601 gcgccgggac tgcggcagcg ttcgcaagtg aaggcgtcgg gcgtgcggct cgaccgcgac
     3661 ctgccggacg cgagcccgcc cgaatgggcg ggcgacatcg agcaggcgat cattcccggt
     3721 gccgcgggct ttcgggaggt cgccttcttc caccggccgt cccgcacgct cgtgctgacc
     3781 gacctcatcg tgaacctcga acccggcaag ctcccgctag cggcccgggc cttcgcctgg
     3841 gcgaccggga cgctcgcgcc ggacgggaa
//
LOCUS       DASQWN010000610         6850 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_964855, whole genome shotgun sequence.
ACCESSION   DASQWN010000610 DASQWN010000000
VERSION     DASQWN010000610.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 6850)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6850)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6850
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_964855"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..651)
                     /locus_tag="VE686_11390"
     CDS             complement(<1..651)
                     /locus_tag="VE686_11390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018259685.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lyase family protein"
                     /protein_id="HYY85086.1"
                     /translation="MTFSALDSELLGPLFTTDAMRAVFSDRARLAAMLRMEAALARAE
                     ARFDLAPPELAAAIEAISPDDFDLAALGRAAAVSGVPTIPFLKALQAKLPPALEPHLH
                     RGATTQDVIDTALVLQMLDAFALIGADLDAILAGLARLAREHRETPCVGRTYGQHAAP
                     ITFGYKVAVWLAGIAEVAEQLPWLRSRALTASLAGPVGTLAALGDKGPQVAEAFAEA"
     gene            complement(657..1838)
                     /gene="pobA"
                     /locus_tag="VE686_11395"
     CDS             complement(657..1838)
                     /gene="pobA"
                     /locus_tag="VE686_11395"
                     /EC_number="1.14.13.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011089160.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0018659 - 4-hydroxybenzoate
                     3-monooxygenase activity [Evidence IEA];
                     GO_process: GO:0018874 - benzoate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxybenzoate 3-monooxygenase"
                     /protein_id="HYY85087.1"
                     /translation="MRTQVGIVGAGPAGLFLAHVLALEGITSVIFERRDQAYVEGRIR
                     AGVLEQGTADLMVETGVGERMQREGLVHHGIELRFDGRGRRIDFADLTGGKGVTVYGQ
                     HEVVKDLIAARLAAGGEIVFEAEAVSLQDFEGDAQPRIRFMKGGVAQELACDFIAGCD
                     GFHGVCRPSIPDGILATYERGYPFAWLGILAQARPSSHELIYANHARGFALYSMRSPE
                     VVRLYVQVAPDEDIEAWPDARVWDELHRRAATPGWSLAEGPVLQKGITGMRSFVTEPM
                     QRGRLFLAGDAAHIVPPTGAKGMNLAVADVRVLARALADYYRTGRTERLARYSDVCLR
                     RVWKAQRFSWFMTSMLHRFPEHDPFDERRQLAELDYVTSSRAAATSLAENYVGLPMEW
                     D"
     gene            complement(1864..2475)
                     /gene="pcaG"
                     /locus_tag="VE686_11400"
     CDS             complement(1864..2475)
                     /gene="pcaG"
                     /locus_tag="VE686_11400"
                     /EC_number="1.13.11.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018644350.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0018578 - protocatechuate 3,4-dioxygenase
                     activity [Evidence IEA];
                     GO_process: GO:0046278 - 3,4-dihydroxybenzoate metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protocatechuate 3,4-dioxygenase subunit alpha"
                     /protein_id="HYY85088.1"
                     /translation="MTEVKPGERPDGITPSQTVGPFFAYALTPTGRYAIADLAGDDLV
                     TDDAAGTRIRIVGRLLDGDGLPVSDAMIEIWQADGEGRYPGHDAALSNARFKGFGRCE
                     TGRDGAFSFRTVKPAGVPGPNGGDQAPHVNVGVFARGLLRRLFTRIYFEDEAANADDP
                     ILALVPAERRATLIARREPGSGEPVYRLDIRLQGEDETVFFEA"
     gene            complement(2468..3178)
                     /gene="pcaH"
                     /locus_tag="VE686_11405"
     CDS             complement(2468..3178)
                     /gene="pcaH"
                     /locus_tag="VE686_11405"
                     /EC_number="1.13.11.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018316732.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0018578 - protocatechuate 3,4-dioxygenase
                     activity [Evidence IEA];
                     GO_process: GO:0046278 - 3,4-dihydroxybenzoate metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protocatechuate 3,4-dioxygenase subunit beta"
                     /protein_id="HYY85089.1"
                     /translation="MTAAYPTRSLDAHPPYLYPDYRSTVKRAPARPLVVIPHTLSELT
                     GPVYGHESLGEHDGDLTRQHTGEPLGERIIVTGRVVDEDGRPVRDTLVEIWQANAAGR
                     YVHVVDQHPAPLDPNFTGAGRAVTDAQGRYRFTTIKPGAYPWKNHANAWRPAHIHFSL
                     FGPSFLSRLVTQMYFPGDPLLALDPMWMSIPDERARLRMMSTFDIGTTEPEWALGYRF
                     DIVLRGRDATPTEDPHDD"
     gene            complement(3243..5054)
                     /locus_tag="VE686_11410"
     CDS             complement(3243..5054)
                     /locus_tag="VE686_11410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011315376.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HYY85090.1"
                     /translation="MAPPLLLLNDIALTFGGPRLLEGAELSVAPGERACLVGRNGSGK
                     STLLKIAAGLVQPDRGTRFLQPGATVRYLAQEPDVTGFSSTLALVEAGLGPGDDPYRA
                     RYLLEQLGLTGDEDPARLSGGEARRCALAQVLAPEPDVLLLDEPTNHLDLPAIEWLES
                     ELKSVRSALVLISHDRRFLQNLSQATVWLDRGVTRRLDRGFAEFETWRDAVLEQEERD
                     RHKLDRKIVAEEDWLRYGVTARRTRNMRRLAGLHDLRRQRRDARRALGTVKMSTAEAD
                     VSGKLVIEADGVSKAYDGRPIVTDLSLRVVRGDRLGIVGPNGAGKTTLLNLLTGTLAP
                     DEGTVRLGTNLTMVTLDQRRESLDPAWTLSEALTGGQGDTVQVGAQTKHVVAYMKDFL
                     FPPEQARTPVGVLSGGERNRLMLARALAKPSNLLVLDEPTNDLDLETLDLLQETIVDY
                     PGTVLLVSHDRDFLDRTVGSVLVSEGEGRWVEYAGGYTDMLAQRGEGVQARTVEKAAR
                     PKESGRSSPATGAPKRKLGFNEQHELKTLPERMRTLEAAIAKLQAILADPNLYAEKPK
                     RFEEASAALAKAQGDLAAAEDRWLSLEMLREELSQAG"
     gene            5171..6247
                     /locus_tag="VE686_11415"
     CDS             5171..6247
                     /locus_tag="VE686_11415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013501357.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="malate/lactate/ureidoglycolate dehydrogenase"
                     /protein_id="HYY85091.1"
                     /translation="MAVIPAQKLQSIVQETFVKAGCSPEEGERIASHLVMANLSGHDS
                     HGVIRVPVYIGWLKEGLVEANKDVKVVTDTPVLAVVDGQYGFGQSTAPQAVRIGIEKC
                     KAMGLSAVALRNTGHIGRIGAWAEMAAAEDLVSVHFVNAAGSILVAPFGAVERRFSTA
                     PFSVGVPRPGQPPIILDFATSLVAEGKVLVASRGGKALPSDALIGPDGKIGNDPTLLY
                     GPYEQDGARNHRLGEGAIRAFGEHKGSGLAMMCELLGGSLTGTGATEEGRRFSNGMLS
                     FYIDAKRLGTADFFSADIARYVDYVKSAKPVTEGGEVLVTGEPELRSRKKRMAEGVPL
                     ADDAWAAIRATAREVGVAEERLKI"
BASE COUNT          994 a         2307 c         2540 g         1009 t
ORIGIN      
        1 cgcctccgcg aaggcttccg cgacctgcgg gcccttgtcg ccgagagcgg cgagcgtgcc
       61 gaccggcccc gcaagggagg ccgtgagtgc gcgcgagcgc agccagggga gttgctcggc
      121 aacctcggcg atgccggcga gccagaccgc gaccttgtag ccgaaggtga tgggggccgc
      181 gtgctggccg taggtgcgcc cgacgcacgg ggtctcacga tgctcccgcg cgagccgcgc
      241 gaggcccgca aggatcgcgt cgagatcggc gccaatcagc gcaaaggcat ccagcatctg
      301 gaggacgagc gccgtgtcga tgacgtcctg cgtcgtcgct ccccggtgca ggtgcggctc
      361 gagcgccggc ggcagcttcg cctgcagcgc cttgaggaac gggatggtcg gcacgcctga
      421 gaccgcggcg gcgcgcccca acgcggcgag atcgaaatcg tcgggcgaga tcgcctcgat
      481 ggctgccgca agctccggcg gggcgaggtc gaagcgcgcc tcggcccgcg cgagcgccgc
      541 ctccatgcgc agcatggcgg caaggcgcgc gcggtcggag aagacggcgc gcatggcgtc
      601 ggtggtgaac agggggccga gaagctcgga gtcgagggcc gagaaggtca tgcggctcag
      661 tcccactcca taggcaggcc gacgtagttc tcggcgaggc tcgtcgcggc ggcgcgggaa
      721 ctcgtgacgt agtcgagttc ggcgagctgc cggcgctcgt cgaaggggtc gtgctcgggg
      781 aagcggtgca gcatggaggt catgaaccag gagaagcgct gcgccttcca cacgcgccgc
      841 aggcacacgt cggaatagcg cgcaaggcgc tccgtgcgtc cagtgcgata gtagtcggcg
      901 agggcgcgcg cgaggacgcg cacgtcggcg acggcgaggt tcatgccctt ggcccccgtc
      961 ggcggcacga tgtgggccgc gtcgccggcg aggaagaggc gtccgcgctg catgggctcg
     1021 gtcacgaacg agcgcatgcc ggtgatgccc ttctgcagca ccggcccctc ggcgaggctc
     1081 catcccggcg tggcggcccg gcggtgcagt tcgtcccaca cgcgggcgtc gggccaggcc
     1141 tcgatgtcct cgtcgggcgc gacctggaca tagagccgca cgacctccgg cgagcgcatg
     1201 gaatagagcg cgaagcccct cgcgtggttg gcgtatatga gctcgtggga ggacggccgc
     1261 gcctgcgcga gaatgccgag ccaggcgaac gggtagccgc gctcgtaggt ggccaggatc
     1321 ccgtccggga tgctcgggcg gcagacgccg tgaaagccgt cgcagccggc gatgaagtcg
     1381 cacgcgagct cctgcgcgac gccgcccttc atgaaacgga tgcgcggctg agcgtcgccc
     1441 tcgaaatcct ggagcgacac ggcctcagcc tcgaagacga tctcgccgcc tgccgcgagc
     1501 cgcgcggcga tgaggtcctt caccacctca tgctggccgt acacggtgac ccccttgccg
     1561 cccgtgaggt cggcgaagtc gatgcgccgg ccacggccgt cgaaccgcag ctcgatgccg
     1621 tggtggacga gcccttcgcg ctgcatgcgc tcgccgacgc ccgtctcgac catgaggtcg
     1681 gcggtgccct gctcgagcac cccggcgcga atgcgcccct cgacataggc ctggtcgcgc
     1741 ctctcgaaga tcacggacgt gatgccctcg agagctagca catgcgcgag gaacaggcct
     1801 gcgggaccgg cgccgacgat gcctacctgc gtccgcatgc gcgtcgcccc tgccctgttc
     1861 gcgtcaggcc tcgaagaaca ccgtctcgtc ctcgccctgg agacggatgt cgaggcggta
     1921 gaccggctcg ccgcttccgg gctcccgccg cgcgatcagc gtggcgcggc gctcggcggg
     1981 cacgagggcg aggatggggt cgtccgcgtt cgcggcttcg tcctcgaagt agatgcgggt
     2041 gaacagccgc cgcaggagcc cgcgggcgaa gacgccgacg ttgacgtgcg gcgcctgatc
     2101 gccgccgttc gggccgggca ctccggcggg cttcacggtg cggaacgaga aggcgccgtc
     2161 gcggccggtc tcgcagcggc caaagccctt gaagcgggcg ttcgacaggg cggcatcgtg
     2221 gcccgggtag cgcccctcgc cgtcggcctg ccagatctcg atcatggcgt ccgacacggg
     2281 gaggccgtcg ccgtcgagga gccgccccac gatgcggatg cgcgtgccgg cggcgtcgtc
     2341 ggtgacgagg tcgtcgccgg cgaggtccgc gatggcgtag cggccggtcg gcgtcagcgc
     2401 ataggcgaag aagggaccga cggtctggga cggcgtgatg ccgtccggcc gctctcccgg
     2461 cttgacctca gtcatcgtga gggtcttcgg tcggcgtcgc gtcgcgcccg cgcagcacga
     2521 tgtcgaagcg gtagccgagg gcccactcgg gctcggtcgt cccgatgtcg aaggtcgaca
     2581 tcatgcgaag ccgggcgcgc tcgtccggta tcgacatcca catcggatcg agcgcgagca
     2641 ggggatcgcc cgggaagtac atctgcgtta cgaggcggga caggaacgac ggcccgaaaa
     2701 gcgagaagtg gatgtgcgcc gggcgccagg cgttggcgtg gttcttccac gggtaggcgc
     2761 cgggcttgat ggtggtaaag cgatagcgcc cctgcgcgtc ggtgacggcg cgaccggcgc
     2821 cggtgaaatt cgggtcgagg ggggccgggt gctggtcgac gacgtgcacg tagcgcccgg
     2881 ccgcgttcgc ctgccagatc tccacgaggg tgtcgcgcac aggccggccg tcctcgtcga
     2941 cgacgcgccc ggtgacgatg atgcgctcgc cgagcggctc gcccgtgtgc tggcgcgtga
     3001 gatcgccgtc gtgctcccct aagctctcgt gcccgtacac cgggcctgtg agctcggaga
     3061 gtgtgtgcgg gatgacgacg agcggccgcg ccggcgcccg cttcaccgtc gagcggtagt
     3121 ccggatagag gtacggcggg tgggcgtcga ggcttcgggt cgggtaggcg gcggtcaaga
     3181 tcggcctccg tgcgctggtc ttccccgcga ggttgcgatt gtcgcgcctc gcgaggcgat
     3241 catcaacctg cctggctcag ctcctcgcgc agcatctcga gcgagagcca gcgatcctcg
     3301 gcggcggcga gatccccttg cgccttggcg agcgccgcgc tcgcctcctc gaagcgcttc
     3361 ggcttctcgg catagaggtt gggatcggcg aggatcgcct gcagcttggc gatcgccgcc
     3421 tcgagggtac gcatgcgctc gggcagggtt ttcagctcgt gctgctcgtt gaagccgagc
     3481 ttgcgcttag gcgccccggt ggccggactg gaacgcccgg actccttcgg ccgcgccgcc
     3541 ttctccaccg tgcgggcctg cacgccctcg ccgcgctggg cgagcatgtc ggtgtagccg
     3601 ccggcgtact cgacccagcg cccctcgcct tctgacacca gcaccgaccc gacggtgcgg
     3661 tcgaggaagt cgcggtcgtg gctgaccaag agcacggtgc caggatagtc gacgatggtc
     3721 tcctgcagga ggtcgagggt ctcgaggtcg agatcgttgg tcggctcgtc gagcacaagg
     3781 aggttcgagg gcttggcaag cgcgcgggcg agcatgagcc ggttgcgctc gccgcccgag
     3841 agcacgccga caggcgtgcg cgcctgctcg gggggaaaca ggaagtcctt catgtaggcg
     3901 acgacgtgct tcgtctgcgc gccgacctgg acggtgtcgc cctgcccgcc cgtgagcgcc
     3961 tccgagaggg tccaggcggg gtcgaggctc tcgcggcgct ggtcgagggt gaccatggtg
     4021 aggttggtgc cgaggcgcac ggtgccctca tccggggcga gcgtgccggt cagcaggttg
     4081 aggagggtcg tcttgccggc gccgttcggc ccgacgatgc cgagccggtc gccgcgcacg
     4141 acgcggagcg acaagtccgt cacgatcggc cggccgtcat aagccttcga cacaccgtcc
     4201 gcctcgatga cgagcttgcc cgagacgtcc gcctcggcgg tgctcatctt gaccgtgccg
     4261 agcgcccggc gcgcgtcgcg gcgctgccgg cgcaggtcgt gcaggccggc gaggcggcgc
     4321 atgttgcggg tgcggcgggc cgtgacgccg tagcggagcc aatcctcctc ggcgacgatc
     4381 ttgcggtcga gcttgtgccg gtcgcgctcc tcctgctcga gcaccgcgtc gcgccaggtc
     4441 tcgaattccg caaagccgcg gtcgaggcgg cgcgtgacgc cgcggtcgag ccataccgtg
     4501 gcctgcgaca ggttctgcag gaagcgccgg tcgtggctga tcaggaccag ggccgagcgg
     4561 acgctcttca gctcgctctc gagccactcg atcgccggca ggtcgaggtg attggtgggc
     4621 tcgtcgagga gcagcacgtc cggctccggc gccaggacct gcgcgagcgc gcagcgccgc
     4681 gcctcgccgc ccgagagccg ggccggatcc tcgtcgcccg tgaggccgag ctgctcgagg
     4741 aggtagcgcg cccggtatgg atcgtcgccc gggccgagcc ccgcctcgac gagggccagg
     4801 gtggacgaga agccggtgac gtcgggctcc tgggcgaggt accgcaccgt ggcgccgggc
     4861 tggaggaagc gcgtgccgcg gtcgggctgg accaggccgg cagcgatctt gaggagcgtc
     4921 gacttgcctg agccgttacg gccgacaagg cacgcccgtt cgccaggcgc gacggacagt
     4981 tcggcccctt cgagcagccg cgggccgcca aaggtcaggg cgatgtcgtt gaggaggaga
     5041 agcggtggcg ccatgggcgc tgcttgcatg gcgagcgccg ccagcgcaag ccgcgcaatt
     5101 gcaccgccta ccgcgccgtg cttttgtcgc gcccctcccc aagaacatcc tccaggaagc
     5161 gccgaacgcc atggccgtca tccccgccca gaagctgcag tccatcgtgc aagagacgtt
     5221 cgtcaaggcg gggtgctcgc ccgaggaagg cgagcgcatc gcctcgcacc tcgtcatggc
     5281 gaacctgtcg ggccacgaca gccacggcgt gatccgcgtg ccggtctaca tcggatggct
     5341 caaggagggc ctcgtcgagg ccaacaagga cgtgaaggtc gtcaccgata cccccgtgct
     5401 cgcggtcgtc gacgggcagt acggctttgg ccagagcacg gcgccgcagg cggtgcggat
     5461 cggcatcgag aagtgcaagg cgatggggct gtcggcggtc gccctgcgca acaccggcca
     5521 catcggccgc atcggcgcct gggccgagat ggcagctgcc gaagacctcg tctcggtcca
     5581 cttcgtcaac gccgcgggca gcattctcgt ggcgccgttc ggcgccgtcg agcgccgctt
     5641 ctcgacggcg ccgttttcgg tcggcgtgcc ccggcccggg cagccgccca tcatcctcga
     5701 cttcgccacc tcgcttgtcg ccgaagggaa ggtcctcgtg gcgagccgcg gcggcaaggc
     5761 gctgccctcc gacgcgctca tcggccccga cggcaagatc ggcaacgacc cgaccctcct
     5821 ctacggcccc tacgaacagg acggcgcgcg caaccaccgc ctcggcgagg gcgccatccg
     5881 cgccttcggc gagcacaagg gctcggggct cgccatgatg tgcgagcttc tcggcggctc
     5941 gctcacgggc acgggcgcga ccgaggaggg ccggcggttc tcgaacggca tgctgtcgtt
     6001 ctacatcgac gcgaagcgcc tcggcaccgc cgacttcttc tccgccgaca tcgcccgcta
     6061 cgtcgactac gtgaagagcg cgaaacccgt caccgagggc ggcgaggtgc tggtcacggg
     6121 cgagccggag ctgcgcagcc gcaagaagcg catggcggag ggtgtgccgc tcgccgacga
     6181 cgcgtgggcg gcgatccgcg ccaccgcccg cgaggtggga gtggcggaag agcggctgaa
     6241 gatctgatct ggccagcagc gcgcgctccc gaccacctcc ccctggaggg gggagggtcg
     6301 cgccgaaggc gcgggtgggg gtgacagggg tgccggacag gaccggggcg gcgacgtttg
     6361 cgcctctttc tgaaccgctg tcaccccacc ccggatcgct gaagcgatcc gaccctcccc
     6421 ctccagggga gggtatggcg cgcggcccgg cggcaacgat gtttccaacg acaccttgac
     6481 aatgttcttg ctttgtgctt gttagctcct gtcccgcccg gcaaggggtg cttccggagg
     6541 tgtctggttg cagggcggca tcgctgagtg aggtttcggc tggcgacagt cggattcgcg
     6601 caaggcggtg gtcctgagga gcaaggccga gaggttcaag ctccgaaggg ctgatgcggt
     6661 gtccgggtcg cgggggtcac gtcccgcggt ccagggtcct caccgtcgac cgggaccggc
     6721 gcggctgcca ggcgcgtccc cggaaggcgg ggtcccgtcc gtcctctccg gggctggcgg
     6781 acgcggagcg aaacgggcta agtctttgaa atcgtactgg attgaccccc aatctatgtc
     6841 ccattagtac
//
LOCUS       DASQWN010000611         3456 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_964916, whole genome shotgun sequence.
ACCESSION   DASQWN010000611 DASQWN010000000
VERSION     DASQWN010000611.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 3456)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3456)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3456
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_964916"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..368
                     /locus_tag="VE686_11420"
     CDS             <1..368
                     /locus_tag="VE686_11420"
                     /inference="COORDINATES: protein motif:HMM:NF014564.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0008410 - CoA-transferase activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="CoA transferase"
                     /protein_id="HYY85092.1"
                     /translation="QESEAPIAAFILARTLEDGLAAFEAAEITAAPVYDVDQFMADPH
                     VRAREIVVEAADDEMESVPMHNVIPRLSDTPGRLRRAAPVIGEHTAELLAGLGCDEGE
                     IESLAGAGVIEVAAREGRS"
     gene            365..1270
                     /locus_tag="VE686_11425"
     CDS             365..1270
                     /locus_tag="VE686_11425"
                     /inference="COORDINATES: protein motif:HMM:NF026954.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016829 - lyase activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CoA ester lyase"
                     /protein_id="HYY85093.1"
                     /translation="MIPQRPLPIWRSMLFVPVTVRKFVEGAPKRGADAIILDLEDSIP
                     MADKERARTLIAEAAEVVSQGGADVVVRVNRPWRMLVRDLEAAIGPGVQAVKLPKIES
                     AEHIQAIAEIVDEIEAERGLAPGHTRFIAMVETASGFFRTEAIARSHPRVVGITVGAE
                     DLALSVGMVPEAEGLFYPNQHCIVAARAAGILPLGFLGTVAEFSDLDAFRAVIRRSRR
                     LGFMGAACIHPSQVAILNEEYRPTRAEVDHATRMLAAYKEAVAQNRGAVTFEGKMIDV
                     PVVQRAEQVLAREAAIAAREAHRVA"
     gene            complement(1267..1986)
                     /locus_tag="VE686_11430"
     CDS             complement(1267..1986)
                     /locus_tag="VE686_11430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009492984.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease activity regulator RraA"
                     /protein_id="HYY85094.1"
                     /translation="MPNLKPETREKLKRVSTATICTALYKRGLRNQFIQDVHPLNPNG
                     APMVGEAFTLRYIPAREDLNPLSVFQDRAHPQRKAVEDCPPGAVFVIDSRKDPRAASA
                     GSILVTRLMKRGVAGVVTDGGFRDSPEIAELGIPAYHNRPSAPTNLTHHQALDINVPI
                     GCGDAPVWPGDVVVGDREGVVVIPAHIADEVADEATEMTAFEDFVTEEVNKGRSILGL
                     YPATEEQTKLDFAAWRKANNR"
     gene            2173..3417
                     /locus_tag="VE686_11435"
     CDS             2173..3417
                     /locus_tag="VE686_11435"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010684185.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-hydroxy acid oxidase"
                     /protein_id="HYY85095.1"
                     /translation="MDSDAPRPTTTDLEAPPGRGVAPTPPARLSRRLSRILSLEDLEP
                     AARAFLPRPVFEFVSGGVESNASRADNRAAFAELGFVPRVLTDVSRRSQATSLFGRTY
                     AAPFGLAPMGMSALAAYRGDLVLARAAAAANVPMIMSGSSLIPLEDVAREGRTAWFQA
                     YLPGEPERILALVDRVERAGFDTLLLTVDVAVSANRENNVRAGFSTPLRPNLRLAFDG
                     LIRPRWLLGTAARTLLRHGMPHFENSYATRGVPILARNVLRDFGARDHLDWSHLELIR
                     RRWKGRLVVKGIMHKDDARRARETGADGIIVSNHGGRQLDGTVSPLRVLPEIAAVAGD
                     MPVMFDSGVRRGTDVLKALALGACFVFVGRPFLYAAAIGGEPGVRRGIDLLSQEIDRD
                     MALLGINTLPEMRPELLMRIGR"
BASE COUNT          494 a         1234 c         1211 g          517 t
ORIGIN      
        1 cgcaggagag cgaggcgccg atcgccgcct tcatcctcgc gcgcaccctc gaggacgggc
       61 tggcggcctt cgaggccgcc gagatcacgg ccgccccggt ctacgacgtc gaccagttca
      121 tggccgaccc gcacgtgcgc gcccgcgaga tcgtcgtcga ggcggccgac gacgagatgg
      181 agagcgtgcc gatgcacaac gtcatcccgc gcctgtccga cacgcccggg cggctgcgcc
      241 gggccgcgcc ggtcatcggg gagcacacgg ccgaactgct cgccggcttg ggatgtgacg
      301 agggggagat cgaaagccta gccggcgccg gcgtcatcga ggtcgcggca cgggagggcc
      361 gatcatgatc ccgcagcgcc ccctcccgat ttggcgctcg atgctgttcg tgccggtcac
      421 cgtgcgcaag ttcgtcgaag gcgcgccgaa gcgcggcgcc gatgccatca tcctcgatct
      481 cgaggactcg atcccgatgg ccgacaagga gcgcgcccgc acgctcatcg ccgaggccgc
      541 ggaggtggtc tcgcaaggag gcgccgacgt cgtggtgcgc gtgaaccgcc cctggcgcat
      601 gctggtgcgc gacctcgagg cggcaatcgg gcccggcgtc caggccgtca agctgccgaa
      661 gatcgaaagc gccgagcaca tccaggcgat cgccgagatc gtcgacgaga tcgaagccga
      721 gcgtgggctc gcgccgggcc acacacgctt catcgccatg gtggaaaccg cgtcggggtt
      781 cttccgcacc gaggcgatcg cgcgcagcca tccgcgcgtc gtggggatca ccgtcggggc
      841 cgaggacctc gcgctttcgg tcggcatggt gccggaggcg gaagggctgt tctacccgaa
      901 ccagcactgc atcgtcgccg cgcgggcggc cggcatcctg cccttggggt tcctcggcac
      961 ggtggccgaa ttcagcgacc tcgatgcatt ccgggccgtc atccggcgct cgcggcggct
     1021 cgggttcatg ggcgcggcct gcatccaccc gagccaggtg gcgatcctca acgaggagta
     1081 ccgcccgact cgggccgagg tcgaccacgc gacacgcatg ctcgcggcct acaaggaagc
     1141 ggtcgcccag aaccggggcg ccgtcacctt cgaagggaag atgatcgacg tgccggtcgt
     1201 gcagagggcc gagcaggtgc tcgcgcgcga agctgctatc gctgcgcggg aggcgcaccg
     1261 cgtcgcctag cgattgttgg ccttgcgcca ggcggcgaag tcgagcttcg tctgctcttc
     1321 cgtcgcggga tagaggccga ggatcgagcg gcccttgttg acctcctcgg tcacgaaatc
     1381 ctcgaacgcc gtcatctcgg tagcctcgtc ggcgacctcg tcggcgatgt gcgcggggat
     1441 cacgacgacg ccctcgcgat cgccaaccac cacgtcgccg ggccacaccg gcgcgtcgcc
     1501 gcagccgatc ggcacgttga tgtcgagggc ctggtggtga gtaagattcg tcggggcgga
     1561 cggccggttg tggtaggccg ggatgccgag ctcagcgatc tcaggggagt cgcgaaagcc
     1621 gccgtcggtg acgacgccgg cgacaccgcg cttcatgagg cgggtgacca ggatggagcc
     1681 ggccgaggcc gcgcgcgggt ccttgcggct gtcgatcacg aagacggcgc cgggcgggca
     1741 atcctcgacg gccttgcgct gcgggtgggc gcgatcctgg aacacggaga gcgggttcag
     1801 gtcctctcgc gccggaatgt agcgcagggt gaacgcctcg ccgaccatcg gcgccccgtt
     1861 cggattgagc gggtggacgt cctggatgaa ctggttgcgc aagccgcgct tgtacagcgc
     1921 cgtgcagatg gtcgcggtgc tgacgcgctt cagcttctcc cgcgtctcgg gcttcaggtt
     1981 cggcatggct tctctccgcg agctgaaagc gaccccgccg agctagagca tcctgccgga
     2041 cagctcaacc gcggcctcgc gttgatcctt gctgcgcggt ggtgctcgtc ggcgcacttg
     2101 tcagccgcgc gccggggggc gagaacggcg ctcacgacct gccggacacg cagcgcggcg
     2161 attgacagag acatggattc cgacgctccc aggccgacca ccaccgacct cgaggcaccc
     2221 ccggggcgcg gcgtggcgcc gacgcccccc gcccgcctgt cgcggcggct gagccgcatc
     2281 ctttccctcg aggacctcga gccggcggcg cgggcgttcc tgccgcggcc ggtgttcgag
     2341 ttcgtgtcgg gcggcgtcga gagcaacgcg tctcgagccg acaaccgcgc cgcgtttgcg
     2401 gagctcgggt tcgtgccccg ggtcctgacc gacgtgtcca ggcgctcaca ggcgacgagc
     2461 ctgttcgggc gcacctacgc ggccccgttc gggcttgcgc cgatgggcat gagcgcgctc
     2521 gcggcatacc gcggcgacct cgtcctggcc cgcgccgcag cggctgcgaa cgtgccaatg
     2581 atcatgagcg gctcgtcgct gatcccgctc gaggacgtgg cgcgggaggg acgcacggcc
     2641 tggttccagg cctacctgcc cggcgagccg gagcgtatcc ttgcgctcgt cgaccgcgtc
     2701 gagcgcgccg gcttcgacac cctgctcctc acggtcgacg ttgcggtgag cgccaaccgc
     2761 gaaaacaacg tccgggccgg cttctcgacg cccctgcggc ccaacctgcg gctcgcgttc
     2821 gacgggctga tccggccgcg ctggcttctc ggcaccgccg cgcgcacgct cctgcgccac
     2881 ggcatgccgc atttcgagaa ttcatatgcc acgcgcggcg tgcccatcct cgcccgcaac
     2941 gtcctgcgcg atttcggcgc ccgcgaccac ctcgactggt cgcacctcga gctgatccgt
     3001 cgccgctgga agggccgcct tgtcgtcaag gggatcatgc acaaggacga cgcgcgccgc
     3061 gcccgcgaga ccggcgccga cggcatcatc gtctcgaacc acggcgggcg gcagctcgac
     3121 ggcacggtgt cgcccctgcg cgtgctgccc gagatcgccg cggtcgcggg cgacatgcct
     3181 gtgatgttcg acagcggcgt ccgccgcggc accgacgtgc tcaaggcgct ggcgctcggc
     3241 gcgtgcttcg tcttcgtcgg ccgtccgttc ctctacgcgg ctgcgatcgg cggcgagccc
     3301 ggcgtgcgcc gcggcatcga cctcctctcg caggagatcg accgcgacat ggcgctcctc
     3361 ggcatcaaca ccctccccga gatgcggccc gagctcctca tgcgcatcgg gcgctgaacc
     3421 atcacctccg gacgaggccc catggcacag aatctc
//
LOCUS       DASQWN010000612         3752 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_554603, whole genome shotgun sequence.
ACCESSION   DASQWN010000612 DASQWN010000000
VERSION     DASQWN010000612.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 3752)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3752)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3752
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_554603"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..387)
                     /locus_tag="VE686_11440"
     CDS             complement(<1..387)
                     /locus_tag="VE686_11440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011580274.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DoxX family protein"
                     /protein_id="HYY85096.1"
                     /translation="MSNVERMARDAAPHLLSLLRIMAALLLLQHGTQKLLGFPPGRAA
                     PELLSLYWFAGMIELVGGVLLALGLFSRTTAFILSGELAFAYWMGHAPRGFFPILNGG
                     ELAALYTFVFLYLAAAGPGPWSVDRMI"
     gene            complement(522..1331)
                     /locus_tag="VE686_11445"
     CDS             complement(522..1331)
                     /locus_tag="VE686_11445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009493665.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Bax inhibitor-1/YccA family protein"
                     /protein_id="HYY85097.1"
                     /translation="MQPFKNSPFAYGAGVARSEVQVDQGLRAFMLGVYNNMTVGLAIS
                     ALVALGVNKLAIAASAAEAYRNAAGAPVRMGGQYLTQFGYTLYGTPLMWVVALAPLAF
                     IFFFSFRMDRMSAAAARTTFFAFAAVMGASLSTLLLRYTGASVVQVFFITAATFGALS
                     LWGYTTQRSLSGMGSFLMMGLIGLIIASLVNIFLASSALQFAISGIGVLIFAGLTAYD
                     TQKLKEMYLYELGTPDGEVAAKASIFGALTLYLDFINMFQFLLALFGNRNE"
     gene            complement(1571..>3752)
                     /locus_tag="VE686_11450"
     CDS             complement(1571..>3752)
                     /locus_tag="VE686_11450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009493663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="FtsX-like permease family protein"
                     /protein_id="HYY85098.1"
                     /translation="LDTDPAMTPADLFALNAGAFGAGVDPGLLARLDLKVGDRISVGA
                     ATIELRARLVSEPDKIANGVGFGPRLIVSQEALKASGLVQPGSLVRWIYRLALNQPDD
                     AELERVSAAAARELPEAGWEVRSRVNADPRFSRNIERFTQFLTLVGLTALIVGGVGVA
                     NAVSAFVDRKRNAIATLKSLGSPGSQVVAIYLTQVMIIALVGVVLGMVVGGALPFIVD
                     AAFGAALPIPLSPTLAVSELGLALLYGLLTALAFALGPLGRAHDVAVSGLFRDQIDPE
                     SRWPRRRYLAVLAIAVLALTALAVFAAYDRKIALIFIVAMAGSFALLRVLATALMALA
                     RRLPRPRRAGPRLALANIHRPGALTPSLVLSLGLGITLLVTLSLIDTNLTRQLTQTLP
                     ERAPSFFFLDIPNAEAEKFDTFLAAQAPGSKVERVPMMRGRLVSLRGIPVAQINAEQQ
                     VAWVLDGDRGITYAAKLPEGSEIAAGEWWPAEYAGKPLVSFERDVARGLGLTVGDEIV
                     VNVLGRNITATIANLRQVEWRTLGINFVMVFSPNTFAGAPHTHLATVTFDAAAQPARD
                     FALVREAAKAFPAVTSLRVKDALDAVNDLVSQLVLAIRGLSSIALAASLLVLAGALAA
                     GHRARLYDAVVLKTLGGTRARLLGAYLLEYGALGLATAAFGLLAGSIAGYFVVTRVMN
                     IPFFLELRAALLSAALAICVTLGLGLVGTWRILGQKPAPYLRDL"
BASE COUNT          669 a         1194 c         1394 g          495 t
ORIGIN      
        1 gatcatgcga tcgacgctcc acggccccgg cccggccgcg gcgagataga ggaacacgaa
       61 ggtgtacagc gcggcgagct cgcccccgtt gaggatcggg aagaagccgc ggggcgcgtg
      121 gcccatccag taggcgaacg ccagctcgcc ggagaggatg aaggccgtcg tccggctgaa
      181 caggccgagg gccagcagca caccgccgac gagctcgatc atgcccgcga accagtacag
      241 gctcaggagc tcgggcgccg cccggcccgg cggaaagccg aggagcttct gggtcccgtg
      301 ctgcagaagc agtagcgctg ccatgatgcg caggaggctg aggagatgcg gggcggcgtc
      361 acgcgccata cgctcgacgt tcgacatgct ttttcaggtt ccaaaagaga aagagcgggc
      421 tcttacggtg aaggccgcgc ggcccgcaaa tcacatgatc gacaacaaaa agccccggcg
      481 cgagggccgg ggctttcgtc gtcgtcaggt ccgtttcggt cctactcgtt gcggttgccg
      541 aacagcgcga gcaggaactg gaacatgttg atgaagtcga ggtagagcgt cagagcaccg
      601 aagatcgacg ccttggcggc gacctcgccg tccggtgtgc cgagctcgta gaggtacatc
      661 tccttgagct tctgcgtgtc gtacgcggtc aggccggcga agatgagcac gccgatgccc
      721 gagatcgcga actgcagcgc gctcgaggcc aggaagatgt tgaccagcga ggcgatgatc
      781 aggccgatga ggcccatcat caggaacgag cccatgccgg acaggctccg ctgcgtggta
      841 tagccccaca ggctgagcgc cccgaaggtg gccgccgtga tgaagaacac ctggacgacg
      901 ctcgcgccgg tgtagcgcag gagcagcgtc gacagcgaag cgcccatcac cgccgcgaag
      961 gcgaagaagg tcgtccgtgc cgccgcggcc gacatgcggt ccatgcggaa cgagaagaag
     1021 aagatgaagg caagcggcgc gagcgccaca acccacatca gcggggtgcc gtagagcgtg
     1081 tagccgaact gcgtcaggta ctgcccgccc atccggaccg gcgctcctgc ggcgttgcgg
     1141 tacgcctccg cggcgctcgc cgcgattgcg agcttgttga cgccgagcgc caccagagcc
     1201 gagatcgcga ggccgacggt catgttgttg tacacgccca gcatgaaggc gcgcagaccc
     1261 tgatcgacct gcacctcgct ccgggctacg ccggcgccgt aggcgaaagg actgttcttg
     1321 aacggttgca tgggagttct cttcgagctc tctgcagtga gtgttcccct cgaggctcac
     1381 gcgaccctcg gccgccgagt tacggcgacg gtatggaata tgtagtgcat cggttcgctg
     1441 cacaaggggc cggtgcggcg aatccggagt accgcgcagc ctcggcgcgt tatcgagaag
     1501 tagagtaaat tcaagcgctt cgctccattc acgggcgcca ttccggcggc ccgagcccgg
     1561 ccgcgacccg tcagaggtcg cgcaggtagg gggcgggctt ctggccgagg atgcgccagg
     1621 tcccgacgag accgagcccg agcgtcacgc agatagccag cgccgcggac aggagcgcgg
     1681 cccgaagctc gaggaagaac gggatgttca tcacgcgggt gacgacgaaa tagcccgcga
     1741 tcgagcccgc caggagcccg aacgccgccg tggcgaggcc gagagccccg tattcgagga
     1801 gataggcccc gagcagccgg gcgcgggtgc cgccgagcgt cttgaggacc acggcgtcgt
     1861 agaggcgggc gcggtgcccc gccgccaggg cgcccgcgag caccagaagg ctcgcggcga
     1921 gcgcgatgct gctcaggccg cggatcgcca ggacaagctg ggacacgagg tcgttcacgg
     1981 catcgagggc gtccttgaca cgcaggctcg tcaccgccgg aaacgccttt gcggcctccc
     2041 gcactagggc gaagtcgcgc gcgggctgcg cggcggcatc gaaggtcacg gtggcgaggt
     2101 gcgtgtgcgg ggcgcccgcg aaggtgttgg gcgagaacac catgacgaag ttgatgccga
     2161 gcgtgcgcca ctcgacctga cgcaggttgg cgatggtcgc cgtgatgttg cggccgagca
     2221 cattgacgac gatctcgtcg ccgaccgtga ggccgagccc cctcgccacg tcgcgctcga
     2281 aggagacgag cggcttgccg gcgtactcgg cgggccacca ttcgccggcg gcgatctcgg
     2341 agccctcggg gagcttcgcc gcataggtga tgccgcgatc gccgtcgagc acccaggcga
     2401 cctgctgctc cgcattgatc tgcgcgacag gtatgccccg cagggagacg aggcggccgc
     2461 gcatcatcgg cacgcgctcg accttcgagc cgggcgcctg cgcggccagg aaggtgtcga
     2521 acttctccgc ttcggcgttc gggatgtcga ggaagaagaa gctcggcgcc cgctcgggca
     2581 gcgtctgcgt gagctggcgc gtgaggttcg tgtcgatgag cgacagcgtc accagaagcg
     2641 tgatgccgag gccgagggac agcacgagcg acggcgtcag cgcgcccggg cggtggatgt
     2701 tggcgagcgc gaggcgtggc ccggcccggc gcggccgcgg cagccggcgc gccagcgcca
     2761 tgagggcggt tgcgagcacc ctgagcagcg cgaaggagcc cgccatcgcg acgatgaaga
     2821 tgagcgcgat cttgcggtcg taggccgcga acacggcgag cgcggtcagc gccaggacgg
     2881 cgatggcgag gacggcgagg tagcggcgcc ggggccagcg gctctcggga tcgatttggt
     2941 cccggaacag gcccgagacg gcgacgtcgt gcgctcgccc gagcggcccg agcgcgaagg
     3001 cgagcgccgt caggaggccg tacaggagcg cgagcccgag ctcgctgaca gcgagcgtcg
     3061 gcgagagcgg aatgggcagc gccgctccga aggcagcgtc aacgatgaac ggcagggcgc
     3121 cgccgacgac catgccgagg acgacgccga cgagcgcgat gatcatcacc tgcgtgagat
     3181 agatcgcgac gacctggctg ccgggcgacc ccaagctctt cagggtggcg atcgcgttgc
     3241 gcttgcggtc gacgaaggcg ctgaccgcat tggcaacgcc gacgccgccg acgatgaggg
     3301 cggtgaggcc gacgagcgtc aggaactgcg tgaagcgctc gatgttgcgg gagaagcgcg
     3361 ggtcggcgtt gacgcgggag cggacctccc agccggcttc gggcagctcg cgcgcggccg
     3421 cggcggacac ccgctcgagc tcggcgtcgt cgggctggtt cagggcaagg cggtagatcc
     3481 agcgcaccag gctgccgggc tgcacgagcc cgctcgcctt gagagcctcc tgcgagacga
     3541 tgaggcgcgg gccgaagccg acgccgttgg cgatcttgtc gggctccgac acaaggcggg
     3601 cccgcagctc gatggtcgcc gcgcccacgc tgatgcggtc gccgaccttg aggtcgagcc
     3661 gggcgagcag gccggggtcg acgccggcgc caaaggcgcc ggcgttgagg gcaaagagat
     3721 cggccggcgt catggccgga tcggtgtcta gg
//
LOCUS       DASQWN010000613         2028 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_159015, whole genome shotgun sequence.
ACCESSION   DASQWN010000613 DASQWN010000000
VERSION     DASQWN010000613.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2028)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2028)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2028
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_159015"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            28..927
                     /locus_tag="VE686_11455"
     CDS             28..927
                     /locus_tag="VE686_11455"
                     /inference="COORDINATES: protein motif:HMM:NF016292.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HYY85099.1"
                     /translation="MALVGLLDHGGADARRHLWGALRQRLHELGYVEGRNVTFEGRWA
                     EGQAERLPALAVDLVARNVDVIVTAGILAAIAARQATSSIPIVTATGSDPVRMGLVGS
                     LARPASNVTGVTTQTEETSGKRLELLRELIPTLSRLGVLSDKANPSTERQAEDTRAVA
                     RAWGLSVEMFSVRGPDEFEAAFFAFVGAGTEALIVPSSPMLFSARQRLAELALKHRLP
                     MAVAQREYAEAGGLLAYASNLAEGFRRAAGFVDRILKGAKPDDLPFEQPTSFNLVINL
                     GTAAALGLMVPLSLLARADEVIE"
     gene            924..1823
                     /locus_tag="VE686_11460"
     CDS             924..1823
                     /locus_tag="VE686_11460"
                     /inference="COORDINATES: protein motif:HMM:NF016292.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate binding protein"
                     /protein_id="HYY85100.1"
                     /translation="MRRRQFIAVVGAAAWPLAVLGQQPPSLLRVGASSVQPRTTAIFV
                     AFVERMAELGYEEGKNFSFEYVQAANVAGYEVAYRELASRKVDILLASGPEVGLKSAL
                     ATAGMRPVVMVAIDYDPLARGYVRSLARPGANLTGISFQQIELTEKRLQVVKEAFPDV
                     PAITVFWDEISADQWHAAENAAPRLGLRLAGVEFREQPYDYERALAQLPLEHRRVLMV
                     LTSPVFAVPDRARLPDFALRHRMASIFSLRQYVDVGGLMSYGRASPRCSDVPPNTSIA
                     LRAAPSPLTCQSSSRPNLNSSST"
BASE COUNT          323 a          665 c          677 g          363 t
ORIGIN      
        1 atccctgcca tggcgcagtc gcgcaacatg gccctggtcg ggctcttgga ccatggcggc
       61 gccgacgcgc gccggcacct ttggggagcc ttgcggcagc gcctgcacga actcggctat
      121 gtggaagggc ggaacgtgac ctttgagggc cgttgggcgg aggggcaggc cgaacggctc
      181 ccggcgctcg cggtcgacct ggtggcgcgc aacgtggacg tcatcgtgac ggccgggatc
      241 ctcgccgcca tcgctgcacg gcaggcgacg agttcgatcc cgatcgtcac agcgaccggc
      301 agcgatcccg tacgcatggg acttgtcggg agcctcgccc gcccggcgag caacgtcacc
      361 ggggtgacga cccagaccga agaaaccagc ggcaagcggc tggagctgct tcgggaactg
      421 atccccacgc tctcgcgcct cggcgtcctg tccgacaagg ccaacccgtc caccgaacgc
      481 caagccgagg acacgcgggc ggtcgcgcga gcgtggggcc tatcggtcga aatgttcagc
      541 gtgcgcggcc ccgacgagtt cgaggcggcg ttcttcgcct tcgtcggagc gggcacggag
      601 gcgctgatcg tgccgtccag tccaatgctg ttcagcgcgc ggcaacggct tgccgagttg
      661 gcgctgaagc accgcctgcc gatggcggtg gcgcaacgcg agtacgccga ggccggcggt
      721 cttctggcct atgccagcaa cctggcggag ggcttccgcc gtgccgccgg ttttgtggac
      781 cggatcttga agggcgccaa acccgacgat ctgccattcg agcagccgac gagctttaat
      841 ctggtgatca atctcgggac tgccgcagca ctcggcctca tggtcccgct ctctctcctc
      901 gcccgcgccg acgaggtgat cgaatgaggc ggcggcagtt catcgccgtc gttggcgccg
      961 ccgcctggcc gctggccgtc ctcggacagc agccgccgag tttgctgcgc gtcggcgcga
     1021 gcagcgtgca gccgcggacg acggcgatct tcgtcgcctt cgtcgaacgc atggccgagc
     1081 tgggttacga ggagggcaag aacttctcgt tcgaatacgt gcaggccgcg aacgtcgccg
     1141 gatacgaggt tgcctatcgc gagcttgcca gccgcaaggt ggacattctg ctcgcttccg
     1201 gtccggaggt cggcctcaaa tcggccctgg cgacggccgg catgcggcct gtcgtcatgg
     1261 tggccatcga ttacgatccg ctcgcgcgcg gctatgtgag gagcctggcg cggcccggcg
     1321 ccaacctgac gggcatctcc tttcaacaaa tcgaactcac cgagaagcgc ttacaagtcg
     1381 tcaaggaggc attcccggac gtgccggcga tcaccgtgtt ctgggacgaa atatccgccg
     1441 accaatggca tgcggcggag aacgcggctc cgaggctcgg gttgcggctt gccggggttg
     1501 agtttcgcga gcagccctac gactacgagc gcgccttggc tcaactgccg ctcgagcatc
     1561 gtcgggtttt gatggtgctc acgtcgccgg tcttcgccgt tcccgaccgc gcgcggcttc
     1621 ccgacttcgc cttacggcat cggatggcgt ccatcttttc cttgcgccag tatgtcgacg
     1681 tggggggtct catgtcctat gggcgagctt caccgcgatg ttccgacgtg ccgccgaata
     1741 cgtcgatcgc attgcgcgcg gcgccaagcc cgctgacttg ccaatcgagc agccgaccaa
     1801 atttgaattc gtcatcaacc tgaaaaccgc gaggaagcat ggacttgaaa tcccgccgac
     1861 gctcctcgcc cgcgtcgacg aggtgatcga gtgaggggcc cgttcccgta agcgcgttta
     1921 tggaactcgg ctttcgtccg tttcgcgacc ttgtccgcta tgcagcgctg gagcgcccat
     1981 gtagcccatg tcagtggagc agccgattgg ggcctgcagg gagtcagt
//
LOCUS       DASQWN010000614         2087 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_555251, whole genome shotgun sequence.
ACCESSION   DASQWN010000614 DASQWN010000000
VERSION     DASQWN010000614.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2087)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2087)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2087
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_555251"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            6..1061
                     /locus_tag="VE686_11465"
     CDS             6..1061
                     /locus_tag="VE686_11465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015686543.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HYY85101.1"
                     /translation="MAGAATAVVAPAIAQSQPEIRWRLTSSFPRQLDTIFGTAQMLAK
                     YMAEATDNKFQIQTFPAGEIVGGLQALDAVQTGTVECCQTPVYFYVGKEPAFGVGTGL
                     PFGLNARQQHSWWHFGGGDKILNDVFARFNCFGLVMGQSGCQMGGFFRKELNTVEDLR
                     GLKFRIGGLGGQVLAKLGVVPQQIAAGDVYPALERGTLDAAEFVGPYDDEKLGLFKVA
                     KYYYAPGWWEGGAMLHLLINMPKYNELPKHYQAMLFHACEAANNWMLAKYDAVNAQAL
                     RRMIGGGTELRLFPQPIMEASLKAANELYGELSEKSPDFKKAYDSMVAFRSDVLPWWQ
                     VNEFQYDAFMVRTRGRS"
     gene            1087..1710
                     /locus_tag="VE686_11470"
     CDS             1087..1710
                     /locus_tag="VE686_11470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002717373.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-hydroxychromene-2-carboxylate isomerase"
                     /protein_id="HYY85102.1"
                     /translation="MPRTIDYYFSMPSPWAYLGHATFVELANRHGAAINYKPVPLGRV
                     FSQTGGLPLAKRHPARQRNRLVELQRWRARRGHPLNLQPKHFPFDATLADRFVIAIVA
                     AGQDPDPFMRRAFAGVWAEERNLADPLVIAELAEAEGLDSTTLLAAAGSDMTEAIYAL
                     NDENAVAGGVFGSPGYVLEGELFWGQDRLDFLDEALATGRAPLRPEV"
     gene            complement(1744..>2087)
                     /locus_tag="VE686_11475"
     CDS             complement(1744..>2087)
                     /locus_tag="VE686_11475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012333060.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HYY85103.1"
                     /translation="AILDGMRALLGGWGCRVLTAGSAAEAVAAVASEGAPQVIVADFH
                     LDEGDGLQAIAVLSALIGPTPAVLLTADRSRAVRDAASAQGVHVLNKPLKPAALRALL
                     AQWRAVRIAAE"
BASE COUNT          319 a          749 c          722 g          297 t
ORIGIN      
        1 cggcgatcgc cggagcggcg accgcagttg tggcgccggc catcgcgcag agccagcccg
       61 agatccgctg gcgcctgacc tcgagcttcc cgcgccagct cgacaccatc ttcggcacgg
      121 cgcagatgct cgccaagtac atggccgagg cgacggacaa caagttccag atccagacct
      181 tcccggcggg cgagatcgtc ggcggcctgc aggccctcga cgccgtgcag accggcaccg
      241 tcgagtgctg ccagacgccg gtgtacttct atgtcggcaa ggagcccgcc ttcggcgtcg
      301 gcaccggcct gccgttcggc ctcaacgcgc gccagcagca ttcgtggtgg cacttcggcg
      361 gcggcgacaa gatcctcaac gacgtgttcg cgcgcttcaa ctgcttcggc ctcgtcatgg
      421 gccagtcggg ctgccagatg ggcggcttct tccgcaagga gctgaacacc gtcgaggatc
      481 tgcgcggctt gaagttccgc atcggcggcc tcggcggcca ggtgctggca aagctcggcg
      541 tcgtgccgca gcagatcgcg gccggcgacg tctaccccgc gctcgagcgc gggacgctcg
      601 acgccgccga gttcgtcggc ccctacgacg acgagaagct cggcctgttc aaggtcgcga
      661 agtactacta cgcgcccggc tggtgggagg gcggcgccat gctgcacctc ctcatcaaca
      721 tgccgaagta caacgagctg ccgaagcact atcaggccat gctgttccac gcctgcgagg
      781 cggcgaacaa ctggatgctc gccaagtacg acgccgtgaa cgcacaggcc ctgcgccgga
      841 tgatcggcgg cggcacggag ctgcgcctgt tcccgcagcc gatcatggag gcgtcgctga
      901 aggccgcgaa cgagctctac ggcgagctct ccgagaagag cccggacttc aagaaggcct
      961 acgactccat ggtggcgttc cgctcggacg tgctgccgtg gtggcaggtc aacgagttcc
     1021 agtacgacgc cttcatggtg cgcacccgcg gccgcagcta acgcgaccgc gaacggggga
     1081 gggcgcatgc cgcgcaccat cgactactat ttctccatgc cgtcgccctg ggcctacctc
     1141 ggccatgcga ccttcgtgga gctggcgaac cggcacgggg ccgccatcaa ctacaagccc
     1201 gtgccgctcg gccgcgtgtt ctcgcagacg ggcggcctgc cgctcgccaa gcgccatccg
     1261 gcgcggcagc gcaaccggct cgtcgagctg cagcgctggc gcgcccggcg cgggcacccg
     1321 ctgaacctgc agccgaagca cttccccttc gacgcgaccc tcgccgaccg cttcgtcatc
     1381 gccatcgtgg cggcgggcca ggaccccgac ccgttcatgc gccgagcctt cgcgggcgtg
     1441 tgggcggagg agcgcaatct cgcagacccg ctcgtcatcg ccgagctcgc cgaggcggag
     1501 gggctcgatt cgacgacgct gctggccgcc gccggcagcg acatgacgga agccatctac
     1561 gcgctgaacg acgagaacgc ggtcgcgggc ggggtcttcg gctcgcccgg ctacgtcctc
     1621 gagggcgagc tgttctgggg ccaggaccgt ctcgacttcc tcgacgaagc cctggccacg
     1681 ggccgcgcgc cgctgcggcc ggaggtgtag cgccgaatcc ctcccctcgc ggggagggtt
     1741 tcgctactcg gcggcgatgc gcacggctcg ccactgcgcg agcagggcgc ggagcgcggc
     1801 gggcttcaga ggcttgttga gcacgtgcac gccttgcgcg ctggccgcgt cgcgaacggc
     1861 tcgcgaccgg tcggcggtaa ggagcacggc gggcgtcggc ccgatcaggg ccgagagaac
     1921 cgcgatggct tgcagcccat cgccctcgtc gaggtggaag tcggcgacga tgacctgcgg
     1981 cgcgccctcg ctcgcgaccg ccgcgaccgc ctcggcggcg gagccggcgg tgagcacgcg
     2041 gcagccccag ccgcccagta gcgcccgcat gccgtcgagg atcgcgg
//
LOCUS       DASQWN010000615         2917 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_470386, whole genome shotgun sequence.
ACCESSION   DASQWN010000615 DASQWN010000000
VERSION     DASQWN010000615.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2917)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2917)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2917
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_470386"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            601..1761
                     /locus_tag="VE686_11480"
     CDS             601..1761
                     /locus_tag="VE686_11480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017484832.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0044423 - virion component [Evidence
                     IEA];
                     GO_function: GO:0005198 - structural molecule activity
                     [Evidence IEA];
                     GO_process: GO:0019068 - virion assembly [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phage portal protein"
                     /protein_id="HYY85104.1"
                     /translation="MLDFLSRLTRSRPDAKAARGFAAAAFYAVGRPVWTPRDYGALAR
                     EGFQKNAVVHRAVRLVAESAATLPLVLAEDGREVPDHPLMALLARPNPREGGARLLES
                     LYGHLMVSGNAYLEAVSLDGAARELYALRPDRMRVVPGADGWPAAYDYCVGTQSVRYE
                     QRGEVPPILHLTLFHPTDDDYGLSPMEAAATALDVHNAAGAWNKALLDNAARPSGALV
                     FGGAGSGLTDPQFERLKAELETNYQGAGNAGRPLLLDGGLDWKPLSLSPQEMDFMAAK
                     NGAAREIALAFGVPPLLLGLPGDNTHANYAEANRAFYRQTVIPLVRRTAEALAHWLSP
                     AWGEAVTLGPDLDAVEALSGERESLWRRVTAADFLTAEEKRAAVGYGREQGP"
     gene            1894..2088
                     /locus_tag="VE686_11485"
     CDS             1894..2088
                     /locus_tag="VE686_11485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009493950.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY85105.1"
                     /translation="MLAFDRITDAVLERGDLAHLALFVWASGASGFALLLLRALSAAN
                     SRFDVFVRELALFNRRHGAR"
     gene            2318..2812
                     /locus_tag="VE686_11490"
     CDS             2318..2812
                     /locus_tag="VE686_11490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009493948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005198 - structural molecule activity
                     [Evidence IEA];
                     GO_function: GO:0008233 - peptidase activity [Evidence
                     IEA];
                     GO_process: GO:0019068 - virion assembly [Evidence IEA];
                     GO_process: GO:0019082 - viral protein processing
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HK97 family phage prohead protease"
                     /protein_id="HYY85106.1"
                     /translation="MASVGETGVFEGYASLFGVADLGCDLVAPGAFAESLARRGASGV
                     RMLWQHDPAQPIGRWLSIAEDGRGLRVRGELNLAVARAREVHALLRDGAIDGLSIGFR
                     VERSRPAAGLRRLEKLDLWEISVVTFPMHPGARVSGVKRRDLPKPGEGLAATIRRARV
                     RLFG"
BASE COUNT          414 a         1081 c          986 g          436 t
ORIGIN      
        1 gttgaggctg acaggcagct agaaatcgcc ggctcgccgc gacactccca gcgggacaat
       61 cgctggcgca ggttcttgtc acgggtcggc tgcgcctggt ccatgcacgc tctcttgagc
      121 ctgcggcatt cgccggtgcc gacggtcccg gccggaatag ggcgtcagca aaaattctta
      181 acaagcccca cagatggtgc ttgacagcgt gacgctccta ctgtaggaat taagcacgct
      241 gaagaactgt acctcgggcc tgacgcccga ggaaccgaag cagcctctca acgagccgcc
      301 cgcgcgcccg ccgggcggtt ttttcatggg ccggaccgga acgccgtcgc ttgctccggg
      361 agcgcgtcca gggacgagcg tcggcgctgg agcacggagc ctcgtcctcc tcgcccgagc
      421 ggcgaggcac ttgctggccg cgcagccaag gggcggggtg ctttagcgcg ggatccgacc
      481 gctcccgacg gcgagacatt ctcccgcaag acaaggcatc ccctgacccg gcccgctgcg
      541 ctcggcgacc cctgcctgca ggggaggcgg cgtgcggcgc ctcattattc ggagcccctc
      601 atgcttgact tcctctcccg cctcacaagg tcccgccccg acgccaaggc cgcgcggggg
      661 tttgcggcgg cggcgttcta tgccgtcggg cggccggtgt ggacgccccg tgattatggc
      721 gctctggcgc gggagggttt ccagaagaat gctgtggtgc accgggccgt gcggcttgtc
      781 gccgagtccg cagcgacgct gcccctcgtc ctcgctgaag atgggcgcga ggtccccgac
      841 catcccctca tggccctcct cgcgcggccg aacccgcgcg aaggcggggc gcggctcctc
      901 gagagcctct acggccacct catggtgtcg gggaacgcct acctggaggc tgtgagcctc
      961 gacggtgccg cgcgcgagct ctacgcgctc aggcccgacc gcatgcgcgt cgttcccggc
     1021 gcagacggct ggcccgccgc ctacgactat tgcgtcggca cgcagagcgt gcgctacgag
     1081 cagcgcgggg aggtgccgcc gatcctgcac ctcaccctct tccacccgac cgacgacgac
     1141 tacggcctct cgcccatgga ggcggcggcg acggcgctcg acgtgcacaa cgccgccggc
     1201 gcctggaaca aggcgctcct cgacaacgcc gcgcgcccct ccggcgcgct ggtgttcggc
     1261 ggcgccggct cgggacttac ggacccgcag ttcgagcgcc tgaaggccga gctcgagacc
     1321 aactaccagg gcgccggcaa cgccggtcgg ccgctcctcc tcgatggcgg gctcgactgg
     1381 aagccgctct ccctctcgcc gcaggagatg gacttcatgg cggccaagaa cggcgccgcg
     1441 cgcgagatcg ccctcgcctt cggcgtgccg cccctgctgc tcggcctgcc gggcgacaac
     1501 acccacgcca actacgccga ggcgaaccgc gccttctacc gccagaccgt gatcccgctc
     1561 gtgcgccgca ccgccgaggc gctcgcgcac tggctctccc ccgcctgggg cgaggccgtg
     1621 acgcttgggc ccgacctcga cgccgtcgag gcgctctcgg gcgagcgcga atccctttgg
     1681 cgtcgcgtca ccgctgccga cttcctcacc gccgaggaga agcgggcagc cgtgggctac
     1741 gggcgcgagc aaggcccctg attattcgcc catcgctcga cgaacagctc gagcgcgacc
     1801 gcgacccgca ggcggcgcga gcgcgccgtc ttcgcatgct cccccgcagt gagcccggcg
     1861 cgggttcgat cggcccagac ccaaggagtt gccatgcttg cattcgaccg catcaccgac
     1921 gcggtgctgg agcgcggcga tcttgcccat ctcgcgctat tcgtgtgggc gagcggcgcc
     1981 tcgggcttcg cgctgctcct tctcagggca ctatcggccg cgaacagccg ctttgacgtg
     2041 ttcgtgcgtg agctcgcgct gttcaaccgg cgccatgggg cgcgctgacc gcgcgcttgt
     2101 ccccgctatc cacaaccgcg cgcaacccgc ccccgcgaga gaacccatgc cgaacaatca
     2161 ggaaacccaa gcagcacaag cgcgccaatc ggcgccaagc acgcgcgatc cggaggcggt
     2221 tatccgcacc ttcgtgcgca ccctcgagcg cctcggggcc gagcgcgccg ccaagggcac
     2281 gccgctcgag cgtgaggtga agttcctcgc cgagcacgtg gcgagcgtcg gcgagaccgg
     2341 ggtcttcgag ggctacgcga gcctgttcgg ggtcgccgac ctcggctgcg acctcgtcgc
     2401 gccgggtgct ttcgcggaga gcctggcgcg gcgcggggct tccggcgtcc gaatgctgtg
     2461 gcagcacgat ccggcgcagc ccatcggccg ctggctctcc atcgcggagg acggacgcgg
     2521 actgagagtg cgtggcgagt tgaacctcgc cgtggcgcgg gcccgcgagg tgcatgcgct
     2581 gctgcgcgac ggcgcgatcg acggcctctc gatcggcttt cgcgtcgagc gctcgcgccc
     2641 cgccgcgggc ctgcgccgcc tcgagaagct cgacctgtgg gagatctcgg tcgtgacctt
     2701 cccgatgcac cccggcgccc gtgtgagcgg cgtcaagcgc cgagacctcc cgaagccggg
     2761 cgagggtctt gccgccacca tccgccgggc gcgtgtgcgc ctgttcggct gagccttcga
     2821 ccgcggcgcc gaccgccgcg caatgcctaa ggcccgccgt ccggcgggcc ttttctttgt
     2881 ccagcgaagc gaggatcacg atgacgcaat ctgccaa
//
LOCUS       DASQWN010000616         2221 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_470528, whole genome shotgun sequence.
ACCESSION   DASQWN010000616 DASQWN010000000
VERSION     DASQWN010000616.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2221)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2221)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2221
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_470528"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..381
                     /locus_tag="VE686_11495"
     CDS             <1..381
                     /locus_tag="VE686_11495"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY85107.1"
                     /translation="LTVVISEALHAVIGHRRRGDPITVESGIVRVADALDMASGRSRI
                     PFETRRPNIHSLSAAAIDAVTIDPGEERAVRIEIEMNNSAGLFQVDELLATKLRGSGI
                     EEHIEVVAQIDAEHEKRLVPVFRI"
     gene            complement(387..1454)
                     /locus_tag="VE686_11500"
     CDS             complement(387..1454)
                     /locus_tag="VE686_11500"
                     /inference="COORDINATES: protein motif:HMM:NF033206.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ScyD/ScyE family protein"
                     /protein_id="HYY85108.1"
                     /translation="MIKQLAALAAAIVALIAAASAQAATVQPVATGLNNPRGVAIGPD
                     GAVYVATAGRGGKLCRGKGENRFCLGMTSGIVKVANGKKTTIAKGLLSAAGAGGVFAT
                     GVHGVSVAPDGTVFGVETSGTPDDIADAPRWARKQAGRLFDLTRGRTPLANVSLIEWN
                     RNLDKVKGDRNSNPYAVLALADRQIVVDAGANAVLQVVGGTVSLLAVIPKNGKSQAVP
                     TSIAQGPDGNFYVGELAEGAGKGKARVWRIPAAGGTPEVYASGFTTITGVAFGPDGSL
                     FVTEFAKNVRKNNLLGAVVRVAPDGSRTRLGGKKLFAPTGAAVDSAGAVYVSNFSVLP
                     AKTPKRSPFKGAGGMLVKITP"
     gene            complement(1460..>2221)
                     /locus_tag="VE686_11505"
     CDS             complement(1460..>2221)
                     /locus_tag="VE686_11505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011472898.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046912 - acyltransferase activity, acyl
                     groups converted into alkyl on transfer [Evidence IEA];
                     GO_process: GO:0006099 - tricarboxylic acid cycle
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="citrate/2-methylcitrate synthase"
                     /protein_id="HYY85109.1"
                     /translation="LSYPGNFLSMMFKMTEVKYDPDPRLEKALDVLWILHADHEQNCS
                     TSAVRSVGSSQVDPYSAVAAGVAALYGPLHGGANEAVLRMLDRIGTTENIPDFLEGVK
                     KREERLMGFGHRVYKNYDPRARVIKEHVDAVFEVTGRNPKLDIAVELEKHALDDEYFT
                     ERKLYPNVDFYSGLIYEALNLPPDMFTVMFAIPRTSGWIAQWREMQEDPETKIARPRQ
                     IYTGSRAKDYVSIEERDQLTDKPRAETNLIDPTRR"
BASE COUNT          318 a          766 c          754 g          383 t
ORIGIN      
        1 ctgaccgttg tcatctcgga ggccctgcac gcggtgatcg gccaccgccg ccggggcgac
       61 ccgatcaccg tcgagtcggg catcgttcgc gtggccgacg ccctcgacat ggccagtggg
      121 cgctcgcgaa tccccttcga gacgcgccgc cccaacatcc actcgctctc cgccgccgcc
      181 atcgacgccg tcacgatcga ccccggcgag gagcgcgccg tgcgaatcga gatagagatg
      241 aacaactcgg ccggcctgtt ccaagtcgac gagctgctcg cgacgaagct gcgcggctcc
      301 ggcatcgagg agcacatcga ggtcgtcgcg cagatcgacg ccgagcacga gaagcggctc
      361 gtgcccgtct tccggatctg atcgtcctac ggcgtgatct tgaccagcat gccgccggcc
      421 cccttgaagg ggctcctctt cggcgtcttg gcgggcagga cgctgaagtt cgacacgtag
      481 acggctcccg cggagtcaac ggcggcgccg gttggcgcga acagcttctt gccgcccagc
      541 cgggtccggc tgccgtcggg agcgacccgc acgaccgcgc ccagcaggtt gttcttgcgg
      601 acgttcttcg cgaactcggt cacgaacagg ctgccgtcgg gtccgaaggc cacgccggtg
      661 atcgtcgtga agccgctggc gtagacctcc ggcgtgccgc cggccgccgg gatgcgccac
      721 acgcgcgcct tgcccttgcc cgcgccctcc gccagctcgc cgacgtagaa gttcccgtcg
      781 gggccctggg cgatcgaggt cggaaccgcc tgcgacttgc cgttcttggg gatcacggcg
      841 agcaggctca ccgttccccc gaccacctgg agcaccgcgt tggcgcccgc gtcgaccacg
      901 atctggcggt cggcgagggc cagcaccgcg tacgggttcg agttgcggtc gcccttgacc
      961 ttgtccaggt tgcggttcca ctcgatcagc gagacgttcg ccaggggcgt gcgccctcgg
     1021 gtcaggtcga acaggcgacc ggcctgcttg cgcgcccacc gcggcgcgtc ggcgatgtcg
     1081 tcgggcgtcc ccgatgtctc gacgccgaag acggttccat cgggagccac ggagacgccg
     1141 tgcacgccgg tggcgaagac gccgcccgcg ccggcagccg agagcaggcc cttggcgatg
     1201 gtcgtcttct tgccgttggc gaccttgacg atgccgctgg tcattccgag gcagaacctg
     1261 ttctcgccct tgccccggca gagcttcccg cccctgcccg cagtcgccac gtagaccgcg
     1321 ccgtcgggac cgatcgccac gccccgcggg ttgttgaggc cggtggcaac cggctggacg
     1381 gttgccgcct gggccgaggc ggcggcaatg agcgcgacaa tggcggccgc gagggccgcg
     1441 agctgcttga tcacagtgct tatctccgag tcgggtcgat caggttggtc tcggcgcgcg
     1501 gcttgtctgt gagctggtcg cgctcctcga tcgatacgta gtccttcgcg cgcgatcccg
     1561 tgtagatctg acgcggccgg gcgatcttag tctccggatc ctcctgcatc tcgcgccact
     1621 gcgcgatcca gcccgacgtc ctggggatgg cgaacatgac cgtgaacatg tccggcggca
     1681 ggttgagcgc ctcgtagatc aggccggagt agaagtcgac gttcgggtag agcttgcgct
     1741 cggtgaagta ctcgtcgtcg agcgcgtgct tctccagctc cacggcgatg tcgagcttgg
     1801 ggttgcgccc ggtcacctcg aagacggcgt ccacgtgctc cttgatgacg cgcgcacgcg
     1861 ggtcgtagtt cttgtagacg cggtggccga agcccatcag ccgctcctcg cgcttcttca
     1921 cgccctcgag gaagtcgggg atgttctcgg tggtgccgat ccggtcgagc atccggagca
     1981 cggcctcgtt cgcgccgccg tgcagcggtc cgtagagcgc ggccactccc gccgcgacgg
     2041 cggagtaggg atcgacctgt gacgagccga cactgcgcac cgcgctggtc gagcagttct
     2101 gctcgtgatc ggcgtgcagg atccagagca cgtcgagcgc cttctcgaga cgcggatcgg
     2161 ggtcgtattt gacctccgtc atcttgaaca tcatcgagag gaagttgccg gggtacgaca
     2221 g
//
LOCUS       DASQWN010000617         7074 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_968890, whole genome shotgun sequence.
ACCESSION   DASQWN010000617 DASQWN010000000
VERSION     DASQWN010000617.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 7074)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7074)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7074
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_968890"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..318)
                     /locus_tag="VE686_11510"
     CDS             complement(<1..318)
                     /locus_tag="VE686_11510"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY85110.1"
                     /translation="MRVRAAGAFVLGAVCSAGVLAAGLGAMLWFLPTALPLRDAPQSS
                     AEERPRSGPDIANWPEIRNGVPDVIAPTSRGAAAAAAVPSIPPPPAIIAPVEIPPVAA
                     APVP"
     gene            complement(428..1807)
                     /locus_tag="VE686_11515"
     CDS             complement(428..1807)
                     /locus_tag="VE686_11515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009764708.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0042910 - xenobiotic transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006855 - xenobiotic transmembrane
                     transport [Evidence IEA];
                     GO_process: GO:0009410 - response to xenobiotic stimulus
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MATE family efflux transporter"
                     /protein_id="HYY85111.1"
                     /translation="MDAPSPQSSPVDTPRFVAGSTMRHVVEMTGAGAIGLIAVFAVDL
                     LSLLYISWLGDPTLTAGVGFATVIMFFAVSINLGFMIAIGALVSRALGAGERARAAQL
                     AASATIIAAASGVVVTIVLIPLLPWLLELLGASPEARPVALVFLWITLPANVLMALGM
                     AYSGALRAAGDAKRAMYVTLSGGVVTAVLDPVLIFGLGLGVPGAAIVTVLSRVAFAYM
                     GYQAAVRIHGLGATPSLRSVLADARPTFAVAFPAILTNLAPGIANAVFAGILARFGNE
                     VVAASAIIDRIVPVAFGAVFALSGAVGPILGQNWGAGRFDRMRQALRDSLVFMAVYVA
                     VVWGLLLLARPLLPVLFNATGMTAELIEFFCLIGGPMWFFLGLLFVANASFNNLGFPL
                     LSTAFNWGRATLGTVPFAYVGSIIGGPKGAMVGLALGGLAFGIAGIVTAFWTIRLLRR
                     RALVADAAP"
     gene            complement(1807..3651)
                     /locus_tag="VE686_11520"
     CDS             complement(1807..3651)
                     /locus_tag="VE686_11520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010681908.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0051139 - metal cation:proton antiporter
                     activity [Evidence IEA];
                     GO_process: GO:0006812 - monoatomic cation transport
                     [Evidence IEA];
                     GO_process: GO:1902600 - proton transmembrane transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="monovalent cation:proton antiporter-2 (CPA2)
                     family protein"
                     /protein_id="HYY85112.1"
                     /translation="MASAASHTSFLAPVLVFCAAAVIAVPLFRRLGQSGVLGYLAAGV
                     AIGPFGLSLIQDPEVVTGVAELGVVLLLFIVGLELKLSRLASMKRDILGLGLSQLAIS
                     AAVVGGVAVAGGLAAPASFVVGVALALSATSIALQMLEERGDLHTRYGERAFAVLLFQ
                     DLAIVAILAVLPLLAGAGGTLRSTPTESLIAIGTALAVLAGAVVVGRYGLNPFFRLLA
                     SSGAREVMTASALLVVFGTALLMDRVGLSMAMGAFLAGLLLAESNFRHQLEADIEPFR
                     GVLLGLFFMSVGMSIDGGLVRDDWRMLALATPAIVLGKTAVVAVLFRATGSSWREAVR
                     AGALLSPAGEFAFVLLPLAATLGVVGAATAQQATALAALTMLVGPVAAKMLDLALERT
                     RKPAPELPAEDFGDANASVLVIGFGRFGQVIDQVLLAHGVDVTVIDNNVERIRASARF
                     GVRIYYGDGTRLDILRAAGAARAQIICVGIDDREAALKIVEMVHQEFPNARTYARAYD
                     RIHAIDLMNHDVDFQLRETFESALAFGRAMLEELGVDGAEAASLVDDVRKRDVARLVL
                     QQAGGTLGGADLLRGRDITPEPLVAPKLKPRALTAETRDIIGDGDGRT"
     gene            3810..4778
                     /gene="ispH"
                     /locus_tag="VE686_11525"
                     /gene_synonym="lytB"
     CDS             3810..4778
                     /gene="ispH"
                     /locus_tag="VE686_11525"
                     /gene_synonym="lytB"
                     /EC_number="1.17.7.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019400893.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0051745 - 4-hydroxy-3-methylbut-2-en-1-yl
                     diphosphate reductase activity [Evidence IEA];
                     GO_process: GO:0019288 - isopentenyl diphosphate
                     biosynthetic process, methylerythritol 4-phosphate pathway
                     [Evidence IEA];
                     GO_process: GO:0050992 - dimethylallyl diphosphate
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-3-methylbut-2-enyl diphosphate
                     reductase"
                     /protein_id="HYY85113.1"
                     /translation="MMAPQKPPLDVLLCAPRGFCAGVVRAIDAVEKALATYGPPVYVR
                     HEIVHNKYVVEDLKRKGAVFVRELTEIPETDAPVIFSAHGVPRAVPEAAAARRLFAID
                     ATCPLVTKVHREAEVHRRRGRHVVLIGHGGHPEVVGTMGQLPADAITLVETLDDVARL
                     APPDPENLAYVTQTTLSVDDTREMVEALQRRFPAIVGPHKEDICYATTNRQGAVKRVA
                     PLVDAMIVVGSSNSSNSQRLREVAEREGCPVVRLVLRAEDLDWAAFAGIRRLGLTAGA
                     SAPEVLVEEIIDGFAERFEVRVETVSTADESVFFPLPRELRGEAAE"
     gene            4782..5747
                     /gene="thrB"
                     /locus_tag="VE686_11530"
     CDS             4782..5747
                     /gene="thrB"
                     /locus_tag="VE686_11530"
                     /EC_number="2.7.1.39"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009764711.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004413 - homoserine kinase activity
                     [Evidence IEA];
                     GO_process: GO:0009088 - threonine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="homoserine kinase"
                     /protein_id="HYY85114.1"
                     /translation="MAVYTDVGDEELAAFLATYELGELLSCKGIAEGVENTNYFLHTS
                     AGSFILTLYEKRVKEADLPFFLGLMEHLSARGLTCPQPVRNRTGQALGRLAGRPAVIV
                     TFLEGISVKRPLARHCRAVGAALAKLHLASADFPMRRPNALSLAGWPPLFAAAEAQAD
                     RVSPGLAERTRRELAHLSEVWPAALPTGVIHADLFTDNVFFLGSELSGLIDFYFACTD
                     AFAYDLAICLNAWCFESDGAFNITKGQALIAGYEAVRRLSPPEVEALPTLCRGSALRF
                     MLTRLVDWLNVPPGALVKPKDPLEFDRKLAFHRRVSRASEYGWGA"
     gene            5744..6178
                     /gene="rnhA"
                     /locus_tag="VE686_11535"
                     /pseudo
     CDS             5744..6178
                     /gene="rnhA"
                     /locus_tag="VE686_11535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003608332.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0004523 - RNA-DNA hybrid ribonuclease
                     activity [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease HI"
     gene            complement(6339..6839)
                     /locus_tag="VE686_11540"
     CDS             complement(6339..6839)
                     /locus_tag="VE686_11540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012783889.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peroxiredoxin"
                     /protein_id="HYY85115.1"
                     /translation="MTIQVGDRLPQTTFRVMTVDGAKPQTTDDVFAGRKVVLIGVPGA
                     FTPTCHRNHLPGYIENAASFTEKGVDAIAVTAVNDVFVMDAWAKASGGEGKVEFLADG
                     NGDFAKALGLTLDASGNGLGVRSKRYSMVVDDGVVKSLNIEETAGKADTSGADNLLRT
                     MGAISP"
     gene            complement(6890..>7074)
                     /locus_tag="VE686_11545"
     CDS             complement(6890..>7074)
                     /locus_tag="VE686_11545"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY85116.1"
                     /translation="EAPDNWYLAPGAMSDAGSFAVEVAQRPRDATGPVELRFTLAAGE
                     RAVETMVRLDAADLAR"
BASE COUNT         1159 a         2462 c         2515 g          938 t
ORIGIN      
        1 tggcacagga gccgcagcga ccggcgggat ctccacgggc gcgatgattg cgggtggcgg
       61 agggatggat ggcaccgcgg ccgcggcggc cgcgccccgc gacgtcggag cgatcacgtc
      121 gggaacgccg ttcctgatct cgggccaatt cgcgatgtcc ggcccggaac gcggccgctc
      181 ctcggccgaa ctttggggtg cgtcccgtag cggcagcgcc gtcggaagaa accagagcat
      241 cgccccgagg ccggccgcaa ggacgcccgc cgagcagacg gccccaagca caaacgcgcc
      301 ggcggctctc accctcatgt cgcgctgcga cctctcacat gacctcctgc cgctctgacg
      361 tttcggtgac cgaaatgagg ccggccgtcg attgtagcgc gcatggcgct ccgaagcagc
      421 cgcccgctca aggggccgcg tcggcaacca gcgcacggcg gcgcaggagc cggatggtcc
      481 agaaggccgt cacgatcccg gcgatgccga aggcaagccc gccgagggca agccccacca
      541 tggccccttt gggaccgccg atgatcgagc cgacgtaggc gaacgggacc gtgccgaggg
      601 tcgcgcgccc ccagttgaac gccgtcgaga gcagcggaaa gccgaggttg ttgaaggagg
      661 cgttggcgac gaacaggagg ccaaggaaga accacatcgg gcccccgatg aggcagaaga
      721 actcgatcag ttccgccgtc atgccggtcg cgttgaacag aacgggcagc aaggggcgcg
      781 caagaagcag aaggccccag accacggcga cgtagacggc catgaacacg aggctgtcac
      841 ggagggcctg gcgcatgcgg tcgaagcgcc cggcgcccca gttctggccg aggatcggcc
      901 cgaccgcccc tgacagggcg aacaccgcgc caaaggcgac cggcacgatc cggtcgatga
      961 tcgccgaggc cgccacgacc tcgttgccga agcgcgcgag gatgccggcg aagaccgcat
     1021 tggcgatgcc gggcgcaagg ttcgtcagga tcgccgggaa ggcgacggcg aacgtgggtc
     1081 ttgcgtcggc gaggacgctc cggagagatg gcgtggcgcc gaggccgtgg atgcgcaccg
     1141 ccgcctggta gcccatgtag gcgaaggcga cgcgcgacag gacggtgacg atagccgcgc
     1201 cgggaacgcc gagcccaagg ccaaagatga gcaccgggtc gagcacggcc gtgaccacac
     1261 cacccgagag ggtcacgtac atcgcgcgct tggcatcgcc ggcggcccgc agcgctccgg
     1321 aatacgccat gccgagcgcc atcagcacgt tcgcgggcag tgtgatccac aagaatacaa
     1381 gcgcgacggg gcgtgcctcg ggactggcac ccaggagttc cagcagccaa ggcagcagcg
     1441 ggatgaggac gatggtcact acgaccccgc tcgcggcagc gatgatggtg gccgacgcgg
     1501 caagctgcgc tgcccgcgcg cgctcgccgg ccccgagtgc gcgcgaaacg agcgccccga
     1561 tggcgatcat gaagccgaga ttgatggaca cggcgaagaa catgatcacg gtggcgaacc
     1621 cgacgcccgc cgtcagggtc ggatcgccga gccacgagat atagaggagc gacaggaggt
     1681 cgaccgcgaa gacggctatg agcccgatcg cacccgcccc cgtcatctcg accacgtggc
     1741 gcatagtcga gccggcgacg aagcggggcg tatcgaccgg cgaggactgc ggcgaaggcg
     1801 cgtccatcag gtacgcccgt cgccatcgcc gatgatgtcg cgcgtctcgg cggtgagcgc
     1861 ccgcggcttc agcttcggcg caaccagggg ctcgggcgtg atgtccctgc cccgcaggag
     1921 atcggcgccg ccgagggtgc cgccggcctg ctgcagcacc aggcgggcga cgtcgcgctt
     1981 gcgcacgtcg tccacgaggc tcgccgcctc ggccccgtcc acgccgagtt cctccagcat
     2041 ggcgcggccg aaagcgaggg ccgactcgaa ggtttcgcga agctggaagt cgacgtcgtg
     2101 gttcatcagg tcgatggcgt ggatgcggtc gtacgcgcgc gcgtaagtgc gtgcgttggg
     2161 gaattcctgg tgcaccatct cgacgatctt gagggcggcc tcgcggtcgt cgatgcccac
     2221 gcagatgatc tgggcccgcg cggccccggc ggcgcgcagg atgtcgagcc gggtgccgtc
     2281 gccatagtag atgcggacgc cgaagcgcgc cgaggcccgg atgcgctcga cattgttgtc
     2341 gatgacggtc acgtcgacgc catgggcgag gagcacctgg tcgatcacct gcccgaatcg
     2401 gccgaagccg atgacgagga cgctggcgtt cgcgtcgccg aaatcctcgg ccggcagctc
     2461 gggcgcgggc ttgcgggtgc gctcgagggc aaggtcgagc atcttggcgg cgacgggccc
     2521 gacgagcatc gtcagggcgg caagcgcggt cgcctgctgc gcggtggcgg cgccaacgac
     2581 cccgagggtc gcagcaaggg gcagcagcac gaatgcgaat tcgccggccg gagagagcag
     2641 cgcgccggcc cgcacggcct cgcgccagga ggagccggtc gcgcggaaga ggaccgccac
     2701 gactgccgtc ttgccgagca cgatcgccgg cgtcgcaagc gccagcatgc gccagtcgtc
     2761 gcgcacgagg cccccgtcga tcgacatgcc gacgctcatg aagaagaggc caaggaggac
     2821 gccgcggaac ggctcaatgt cggcctcgag ctggtggcgg aagttcgatt cggcgaggag
     2881 caggccggcg aggaaggcgc ccatcgccat ggacaggccg acccggtcca tgagcagtgc
     2941 ggtgccgaac acgacgagga gcgccgacgc ggtcatcacc tcgcgcgcgc cactcgaggc
     3001 gaggagccgg aagaacgggt tgaggccgta ccgtccaacc accacggcgc ctgcgagcac
     3061 cgcgagggcc gtgccgatcg cgatcagcga ctccgtcggg gtgctgcgca gcgtcccccc
     3121 ggcaccggcg agcagcggca gcacggcgag gatggccaca atggcgaggt cctggaacag
     3181 cagcaccgcg aaggcacgct cgccgtagcg ggtgtgcagg tcaccgcgct cctcgagcat
     3241 ctgcagcgcg atggacgtgg ccgagagcgc aagcgcgacg ccgacgacga aggaagcggg
     3301 tgccgcaagc ccccccgcca cggcgacacc cccgacgacc gccgcgctga tggcgagctg
     3361 gctcaggccg aggcctagga tgtcgcgctt catcgacgcg agccgcgaca gcttgagctc
     3421 gaggccgacg atgaacagca gcagcaccac cccgagctcg gcgacccccg tcaccacctc
     3481 cgggtcctgg atcagcgaca ggccgaacgg cccgatcgcc acgccggcgg cgaggtagcc
     3541 gaggacaccg ctctgcccga ggcgtcggaa cagtggcacg gcgatcacgg ccgcggcgca
     3601 gaacaccagg accggagcta ggaagctggt gtgggaggcg gcgctcgcca tggctctact
     3661 ggggacggcg ggggaccgct cgcggtggcg gcaggagagc gctacttagt cgctctcggc
     3721 cacgagcgcg aggccggtac cctggccttc cctggccgga tagttgcgcg ggttgacagg
     3781 gcacctgccc tctcgcacat ccggcgcaga tgatggcgcc ccaaaaacct ccgctcgacg
     3841 tcctgttgtg cgcgccgcgc gggttctgcg ccggggtggt gcgggcgatc gacgcggtcg
     3901 agaaggcgct cgccacctac gggccgccgg tctacgtccg ccacgagatc gtccacaaca
     3961 agtacgtcgt cgaggacctc aagcgcaaag gcgcggtctt cgttcgcgag ctgaccgaaa
     4021 tccccgagac ggatgcgcca gtgatcttct ccgcccacgg ggtcccacgc gcggtgccgg
     4081 aagcggcggc ggcgaggcgg ctgttcgcca tcgacgccac ctgcccgctc gtcaccaagg
     4141 tccaccgcga ggcagaggtg caccgtcggc gggggcgcca cgtggtgctc atcggccacg
     4201 ggggtcatcc cgaggtcgtc ggcaccatgg ggcagctgcc cgccgacgcc atcaccctcg
     4261 tcgagacctt ggacgacgtc gcgcggctcg cgccgccgga tcccgagaac ctcgcctacg
     4321 tgacgcagac aaccctgtcg gtcgacgaca cgcgcgagat ggtcgaggcg ctgcagcggc
     4381 gcttcccggc cattgtcggg ccgcacaagg aagacatctg ctacgcgacg actaaccgcc
     4441 agggcgcggt caagcgcgtg gcgccgcttg tcgacgccat gatcgtcgtc ggctcgtcga
     4501 actcgtcgaa ctcgcagcgt ctgcgcgagg tggccgagcg cgaaggctgc ccggtggtgc
     4561 gcctcgtcct gcgcgccgag gacctcgact gggccgcgtt cgcgggcatc cgccgcctcg
     4621 ggctgacggc cggcgcgtcc gccccggagg ttctggtcga ggagatcatc gacggcttcg
     4681 cggagcgttt cgaggtgcgc gtcgagactg tctcgaccgc cgacgagagc gtgttcttcc
     4741 ccctgccgcg cgagctgcgc ggcgaagccg cggagtagcc cgtggccgtc tacaccgacg
     4801 tcggcgacga ggagctcgcg gccttcctcg ccacctacga gctcggcgag ctgctgtcgt
     4861 gcaagggcat cgccgagggc gtcgagaaca ccaactactt cctgcatacg agcgccgggt
     4921 ccttcatcct cacgctctac gagaagcgcg tgaaggaggc cgacctgccg ttcttcctcg
     4981 gcctcatgga gcacctttcc gcgcgcggcc tcacctgtcc gcagccggtg cgcaaccgga
     5041 cggggcaggc gctcggccgc ctcgccggcc gccccgccgt gatcgtgacc ttcctcgagg
     5101 gcatttcggt gaagcgcccc ttggcgcgcc actgccgcgc ggtcggagct gccctggcca
     5161 aactccatct cgcgagtgcg gatttcccga tgcggcggcc gaacgccctc tcgctcgccg
     5221 gctggccgcc gctcttcgcc gcggcggagg cgcaggccga ccgcgtgtcg ccgggactcg
     5281 ccgagcgtac ccggcgcgag ctcgcccatc tgtcggaggt ctggccggcc gcgctgccga
     5341 ccggcgtcat ccacgccgac ctcttcacgg acaacgtgtt cttcctcggc agcgagctgt
     5401 cgggcctgat cgacttctac ttcgcctgca cggacgcctt cgcgtacgac ctcgcgatct
     5461 gcctcaacgc ctggtgcttc gagtccgacg gcgcgttcaa catcaccaag ggccaggccc
     5521 tcatcgcggg ctatgaggcg gtgcgccggc tgtcgccgcc ggaggtcgag gcgcttccga
     5581 ccctgtgccg cggctcggcc ctgcgcttca tgctgacgcg tctcgtcgac tggctcaacg
     5641 tccccccggg cgcgctcgtg aagccgaagg accccctcga attcgatcgc aagctcgcgt
     5701 ttcaccgccg cgtgtcgcgg gcgagcgaat acggatgggg cgcatgagcg acagggtcgc
     5761 gatcttcacc gacggggcct gctcgggaaa ccctggcccc ggcggctggg gcgcgctcct
     5821 gcgccttggc gcgaccgaga aggagctctg cggcggcgag accgtgacga ccaacaaccg
     5881 catggagctc atggccgcca tcatggcgct ggaggcgctc aagcgcccct gcgctgtcga
     5941 cctctacacg gactcgcaat acgtccgcga cggcatcatg aagtggctcg ccgggtggaa
     6001 gcgcaagggc tggcgcacgt cgaccgggtc acccgtcaag aacgaggacc tgtggcggcg
     6061 gctcgacgag gcgcgggcgc cgcacgacgt gacctggcac tgggtgcgcg gccacgccgg
     6121 ccacgtcgag aacgagcgcg tcgacgcgct cgcccgcaag gggctgaagg agcatcgccg
     6181 gtcggtgacg ccgcccgagc cccgcagggc tgcgccgccg gagccggcgg ctcccccgac
     6241 gaagccgtcg aaggagccgc tgccgggcga gacccaggct cagcgccgca agcgactcgg
     6301 cctggagacg cagaagtggc gcgacggcgt cgccgccatc aaggcgaaat cgcgcccatc
     6361 gtcctgagga gattgtcggc gccggaggta tccgccttgc cggccgtctc ctcgatgttg
     6421 agggacttca cgacgccgtc gtcgaccacc atggagtagc gcttggagcg cacgccgagg
     6481 ccgttgccgg acgcgtccag cgtcaggccg agggccttgg cgaaatcgcc gttgccgtcg
     6541 gccaggaact cgaccttgcc ctcgccgccg ctcgccttgg cccatgcgtc catgacgaag
     6601 acgtcgttga cggccgtcac cgcgatcgcg tcgacgccct tttccgtgaa cgacgccgcg
     6661 ttctcgatgt agcccggaag gtggttgcgg tggcacgtcg gcgtaaaggc gcccggcacg
     6721 ccgatgagca ccaccttgcg ccccgcgaac acgtcgtcgg tggtctgcgg cttcgccccg
     6781 tccaccgtca tgacgcggaa cgtcgtctgc ggcagccggt cgccaacctg gatggtcatg
     6841 tcgcttggtc ctttgatgtg gtcgcgccgc gtggcgcacg gccttgcagt tagcgcgcga
     6901 gatcggcggc gtcgaggcgc accatcgtct caacggcccg ctcgcccgcc gcgagagtga
     6961 agcgaagctc gaccggaccg gtcgcatcgc gcggacgctg ggcgacctcg accgcgaagc
     7021 tgccggcgtc gctcatggcg cctggggcga gataccagtt gtcgggagct tccg
//
LOCUS       DASQWN010000618         3484 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_472155, whole genome shotgun sequence.
ACCESSION   DASQWN010000618 DASQWN010000000
VERSION     DASQWN010000618.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 3484)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3484)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3484
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_472155"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..833
                     /locus_tag="VE686_11550"
     CDS             <1..833
                     /locus_tag="VE686_11550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014498401.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HYY85117.1"
                     /translation="VAALGHRSIHAVVGNDFGAGIAAWCALVRPDVFRSLALMTPFGG
                     PPDLPFATDGKEPVPPATPTIHEALASLPRPRKHYQWYYATRPANAQIMHCRQGVHNF
                     LRAYYHHKSADWKGNKPHRLAGWTAEELAKMPTYYIMDLFDDMPAAVGKEMPSAAEIA
                     ANQWLTEAELAVYAGEWQRTGFQGGLNWYRSRTSGTFEGELQLFAGRTIDVPSIFIGG
                     MSDWGIYQTPGAFERTQEVCTRMVSCQLLDGAGHWVQQEQAEQVIPLLLDFLRHQAAA
                     "
     gene            complement(966..2192)
                     /locus_tag="VE686_11555"
     CDS             complement(966..2192)
                     /locus_tag="VE686_11555"
                     /inference="COORDINATES: protein motif:HMM:NF014564.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CaiB/BaiF CoA-transferase family protein"
                     /protein_id="HYY85118.1"
                     /translation="MTPLQDIRVLSVTVYLAGPFLSMTLARFGAEVIKVEAPGSGDPA
                     RNLGPFAGPRGIAHDRGADDVSIPFLKRSEGVKCVTLNLKDAEGRRMFLDLAKKTDVL
                     IENLAPGSMSRLGLGYGDVSAVNPGIVYCSIAGYGQSGPYKDLPAHDHQIQAMSGVMD
                     MNGDPDGPPMRVGLYVADLVTPLYAALGIYGALRVKERTGKGQHIDASMIDTLAALMF
                     MEPVEFVAAQGLPVRVGNRARDDVTGLYRLKDGDVFITIVNEGRWQRLCNTIGVAELI
                     DDPRYATVALRKERLPELRDIVQARLGRLTCEQGIALLEKAEIPVSRVRGLSEALHDE
                     HFRARGTLRPMRRSGSTAPVEGGVLPGLPLRFSDGELPQLDGGADLGQHNAEVYGRLL
                     GLDAAALGALKARGVV"
     gene            complement(2356..3231)
                     /locus_tag="VE686_11560"
     CDS             complement(2356..3231)
                     /locus_tag="VE686_11560"
                     /inference="COORDINATES: protein motif:HMM:NF015297.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aldolase/citrate lyase family protein"
                     /protein_id="HYY85119.1"
                     /translation="MKPIRSMMFVPGNKPSMIEKAAKAKADALILDLEDSVPPAERLK
                     ARELIVSRLSWLAEQRQRIYVRINRSPYLYDFDDLLAVVGPHVEGIVLSKPNGPEDVD
                     CISMMLNEVEHRKGIAIGATRLVPTLETARSMELVYEIAKRDRVTALGGAAARSADTE
                     RALGYVWSADGREALYLKSRVVMAARAAGKAPLGGLWQQVHDIEGLRAFLARDRQLGM
                     TGVFLLHPSNVAPANETFSPSAAEIAYYEGMIDAHAAAVAAGRASCIYDGEHIDIAHV
                     ETARQIVAMAASVEN"
     gene            complement(3293..>3484)
                     /locus_tag="VE686_11565"
     CDS             complement(3293..>3484)
                     /locus_tag="VE686_11565"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY85120.1"
                     /translation="PTAAFPERTGWLPISTRSGRSPALLDNLVGAGKQCWRHGEPERL
                     RSLKVDHEVEFCRLLNQPE"
BASE COUNT          651 a         1110 c         1095 g          628 t
ORIGIN      
        1 tcgtcgcggc gttggggcac cgttcgatcc acgccgtcgt cggcaacgat ttcggcgccg
       61 ggatcgccgc atggtgtgcg ctggttcggc ccgacgtgtt ccgctcgctg gcgctgatga
      121 cgccgtttgg cggaccgccc gacctgccgt tcgccaccga cgggaaggag ccagtaccgc
      181 ccgcgacgcc gacgatccac gaggcgctgg cgtcgctgcc cagaccgcgc aagcattacc
      241 aatggtacta cgcgacgcgg ccggccaatg cccagatcat gcattgccga cagggcgtgc
      301 acaatttcct gcgcgcctac taccaccaca agagcgccga ctggaaaggc aacaagccgc
      361 atcggctcgc cggctggacc gccgaagaac tggcgaagat gccgacctac tatatcatgg
      421 acctgttcga cgacatgccg gcagcggtcg gcaaggagat gccgtcggcg gcggagatcg
      481 ccgccaacca atggctgacc gaggcggagc tggcggtcta tgccggtgag tggcagcgca
      541 cggggtttca gggcgggctg aactggtacc gctcgcgcac atccggcacg tttgagggcg
      601 aattgcagct atttgccggg cgcacgatcg acgtgccatc gatcttcatc ggcggcatga
      661 gcgactgggg tatctaccag acgccgggcg ctttcgaacg cacgcaggag gtctgcaccc
      721 gcatggtcag ctgtcagctg ctcgacggcg ccgggcactg ggtgcagcag gagcaggcgg
      781 agcaggtcat cccgctgctg ctcgatttcc tgcgccacca ggcggcggct taaaaccgga
      841 cttagcctag ctagattagc tagctaggcc cacgttgagc cgtgtccccg tggggcgtcc
      901 tctctacgtg ataatgtgat cttcccccga aaaagtggac ggggaggttg cgctagtggc
      961 tcggctcaga ccacgccgcg tgctttcagt gccccaagcg ccgccgcatc caagccgaga
     1021 aggcggccgt agacctcggc attgtgttga ccaagatcgg cgccgccgtc gagttgggga
     1081 agctcgccat cggagaacct gagcggtagg ccgggaagga cgccaccttc gaccggagcc
     1141 gtgctgccgg agcgtcgcat gggccgcaag gttccgcgcg ccctgaaatg ctcgtcgtgc
     1201 aacgcttccg acaatccacg cacgcgcgag accgggattt cggctttctc caggagggcg
     1261 atcccttgtt cacaggtgag gcgcccaagg cgcgcctgaa caatgtccct cagctctggc
     1321 agacgctctt tccggagagc caccgtcgcg tagcgtggat cgtcgataag ttctgcaacg
     1381 ccaatcgtgt tgcagaggcg ctgccaccgc ccctcattca cgatcgtgat gaaaacatca
     1441 ccatccttca atcgatagag ccctgtcaca tcgtcgcgcg ccctattgcc gacgcgtacc
     1501 ggcagaccct gcgccgcgac gaattcgacg ggctccatga acatcagcgc ggccagcgtg
     1561 tcgatcatcg aagcgtcgat gtgctggccc tttcccgtcc gttccttcac tctgagtgcg
     1621 ccgtagatgc cgagcgccgc gtagagcggc gtgaccagat ccgcgacgta aaggccaacc
     1681 cgcatcggtg gcccgtccgg atcgccgttc atgtccatga cgcccgacat cgcctggatc
     1741 tggtggtcgt gcgcaggcag atccttgtag ggaccagatt ggccgtaacc ggcgatcgag
     1801 caatagacga tgccgggatt gacggccgag acatcgccgt agccgaggcc cagtcgcgac
     1861 atcgatccag gcgccagatt ttcgatcaac acatcggttt tctttgcaag atcgaggaac
     1921 atgcggcgcc cctcggcatc cttgaggttc agcgtcacgc acttgacgcc ctcggagcgc
     1981 ttgaggaacg ggatcgagac gtcgtcggcg ccacggtcgt gcgcgatgcc cctggggccg
     2041 gcgaaggggc cgaggttgcg cgcggggtca cccgagcctg gtgcttcgac cttgatcacc
     2101 tcggcgccga agcgggcaag tgtcattgaa agaaacgggc cggcgagata gacggtcacg
     2161 gacagcacgc gtatgtcttg aagtggcgtc aatggaaact cctcggttcg gggggcagct
     2221 gcaggttcaa gattgactgc gccgaatatg ctgtcgagag accaccacta agctatctga
     2281 agcaacttca cccaatgaat tcccatatct ttgccaacga tgttttagaa caagatcgcg
     2341 cgctcatccg cgcgatcagt tctcgacaga cgcagccatt gctacgatct ggcgcgcggt
     2401 ctcaacgtgg gcgatgtcga tgtgctcgcc gtcgtaaatg caggatgcgc ggcccgccgc
     2461 gaccgccgca gcgtgggcat cgatcatgcc ttcgtaatag gcgatctctg ccgctgacgg
     2521 actgaacgtc tcgttcgcgg gggcgacatt cgacgggtgc agcaggaaca ccccggtcat
     2581 gccgagttga cgatctcgcg ccaggaaggc acgcagtccc tcgatgtcgt gtacctgttg
     2641 ccagaggccg cccaacggcg ccttgccggc cgctcgcgcc gccatcacca cgcgcgattt
     2701 cagatagagc gcctctcgcc catccgccga ccagacgtag ccgagcgcgc gttcggtgtc
     2761 ggcactccgc gcagcggcgc cacccaaggc tgtcacgcgg tcacgcttgg cgatctcgta
     2821 gaccaattcc atcgaccgcg cggtctcgag cgtcggaacg agccgggtgg ctccaatcgc
     2881 tatgcccttt cggtgttcca cctcgttcag catcatcgaa atgcagtcga catcctcagg
     2941 tccgttgggc ttcgagagga cgatcccctc cacatgcggc ccgacaacgg cgagcaggtc
     3001 atcgaaatca tagaggtagg gactgcggtt gatgcggacg tagatgcgct gccgctgctc
     3061 cgccagccag gagagcctgg agacaatgag ttcccgcgcc ttgaggcgct cagccggcgg
     3121 tacgctgtcc tcgagatcga ggatgagcgc atcggccttc gccttcgcgg ccttctcgat
     3181 catagagggc ttgttgccgg gcacgaacat catcgatctg atgggtttca tctggaactc
     3241 cctcacgcgt gcgagaaggc aacaatgtca caggaagttg gagcacgctt gctcattccg
     3301 gctggttgag cagccgacaa aattcgactt cgtgatcaac cttaagactg cgtaggcgct
     3361 cgggctcacc gtgccgccag cattgcttgc ccgcgccgac gaggttatcg agtaaggcag
     3421 gcgagcgccc gctccgggtc gaaatcggta gccagccagt acgctcggga aaggccgctg
     3481 tcgg
//
LOCUS       DASQWN010000619         2564 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_969441, whole genome shotgun sequence.
ACCESSION   DASQWN010000619 DASQWN010000000
VERSION     DASQWN010000619.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2564)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2564)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2564
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_969441"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..429)
                     /gene="sfsA"
                     /locus_tag="VE686_11570"
     CDS             complement(<1..429)
                     /gene="sfsA"
                     /locus_tag="VE686_11570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003601764.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000023 - maltose metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA/RNA nuclease SfsA"
                     /protein_id="HYY85121.1"
                     /translation="MRFPSPLIEGRLVERYKRFLADVDLATGERVTAHCANPGAMLGL
                     IAPGSRVLLSRSTNPLRKLAYSWELVEAPLAGGPPQLVGVDTTRPNALVAEALAAGRL
                     PPLAGYAGVRREVKYGERSRVDFLLEAEGRPPCFLEVKNCH"
     gene            540..1289
                     /locus_tag="VE686_11575"
     CDS             540..1289
                     /locus_tag="VE686_11575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018042407.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin-binding protein"
                     /protein_id="HYY85122.1"
                     /translation="MSAPAVTAAILVIGDEILSGRTKDKNIGYIAEYLTGIGIDVREV
                     RVVPDEEAEIVEAVNALRHRYTYVLTTGGIGPTHDDITADSIAKAFGVGIDVDERARA
                     MMLERFRPEDLNEARLRMARIPHGADLVDNPISRAPGFKLGNVVVMAGVPSIMQAMLD
                     AVAPTLSTGARMIAETIPADKVPEGRYAQGLSEIAKAHADVSIGSYPSFGPNGFANQI
                     VVRGKDEGAVAAAVADVRTLVTALQGEMAAS"
     gene            complement(1329..2408)
                     /locus_tag="VE686_11580"
     CDS             complement(1329..2408)
                     /locus_tag="VE686_11580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020817899.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IS630 family transposase"
                     /protein_id="HYY85123.1"
                     /translation="MRPGIIVDVTAADRDWLEAIIADRNSPQKHVWRAAIVLASADGL
                     GTVAIMRRTGKSKTAVWRWQERFAAEGVEGLLRDKTRPSRIVPFGPEVGERIVALTLA
                     EPPGETTHWTGRAMAKATGVSLSYVQRIWRSHGLQPHRIRTFKLSNDPAFATKVRDIV
                     GLYIDPPAHAVVLSIDEKSQIQALDRTQPGLPLKRGRAGTMTHDYKRNGTTTLFAALD
                     VLDGKVVGRCMQRHRHQEFIRFLNAVEKTVPASKAMHVILDNYAAHKHPNVIAWLARH
                     PRVTFHFTPTSASWLNAVEGFFATLTKRRLQRGTFLGVVDLQAAINRYVEEHNADPKP
                     FRWRAEPDAIIAAAARGHQTLDSVH"
BASE COUNT          413 a          840 c          902 g          409 t
ORIGIN      
        1 gtggcagttc ttgacctcca ggaagcacgg cggccggccc tcggcctcga gcaggaagtc
       61 gacgcggctc ctctcgccgt acttcacctc gcgccgtacc ccggcgtagc cggcgagggg
      121 agggaggcgc ccggccgcga gcgcctcggc gacgagggcg ttcggccgcg tggtgtcgac
      181 gcccacgagc tgcggcggac cgcccgcgag cggcgcttcg acgagctccc aggaataggc
      241 gagcttgcgc aacgggttgg tcgagcggga caggagcacg cggctgcccg gcgcgatcag
      301 tcccagcatg gccccggggt tcgcgcaatg cgccgtgacg cgctcgccgg tggcgaggtc
      361 cacgtcggca aggaagcgct tgtagcgctc gacgagccgg ccttcgatga gcggggaggg
      421 gaagcgcatg ggcccgcgct ctaccagcgc agggacgccg tcgccatggc gccggcgggg
      481 ccaacctcct tgagcggggc tcgcccgcag gctaaagccg gtgaaagagg accacgccca
      541 tgagcgcgcc tgccgtcacc gccgccatcc tcgtgatcgg ggacgagatc ctctccgggc
      601 gcaccaagga caagaacatc ggctacatcg ccgagtacct cacggggatc ggcatcgacg
      661 tgcgcgaggt ccgcgtcgtc cccgacgagg aggccgagat cgtcgaggcc gtgaacgccc
      721 tgcggcaccg ctacacctac gtgctcacca ccggcggcat cggcccgacg cacgacgaca
      781 tcaccgccga ttcgatcgcc aaggcattcg gagtcggcat cgacgtggac gagcgcgccc
      841 gggccatgat gctcgagcgc ttcaggcccg aggacctcaa cgaggcgcgc ctgcgcatgg
      901 cgcgcatccc gcacggcgcg gacctcgtcg acaacccgat ctcgcgcgcg ccgggcttca
      961 agctcggcaa cgtcgtcgtc atggccggcg taccctccat catgcaagcc atgctcgacg
     1021 cagtggcgcc gacgctctcg acgggcgccc ggatgatcgc tgagacgatt ccggccgaca
     1081 aagtgccgga gggccgctac gctcaaggcc tgagcgagat cgccaaggcg cacgcggacg
     1141 tgtcgatcgg ctcctatccc tcgttcgggc cgaacggctt cgccaaccag atcgtggtgc
     1201 gcggcaagga cgaaggcgcg gtcgcggcgg cggtcgctga cgtccggacg ctcgtcacgg
     1261 ccctgcaggg cgagatggcc gcgagttgag ggcaggctcg aagtttgcgc ttgctgccgc
     1321 cgcggcagct agtggactga atccaacgtc tggtgcccac gtgctgcggc ggcgatgatg
     1381 gcgtctggtt cggcccgcca tcggaagggt ttcggatctg cgttgtgctc ctccacgtag
     1441 cggttgatcg cggcctgaag gtcgacgacg ccgaggaagg tgccgcgttg gagtcggcgc
     1501 ttggtgaggg tcgcgaagaa gccctcgact gcgttgagcc aggaagcgct ggttggggtg
     1561 aagtggaagg tgacccgggg gtggcgggca agccaagcga tcacgttcgg gtgcttgtgg
     1621 gccgcgtagt tgtcgaggat gacgtgcatg gccttgctag ccgggacggt cttctcgacg
     1681 gcgttgagga agcggatgaa ctcctgatgc cgatggcgct gcatgcaacg gcccacgacc
     1741 ttgccgtcca gcacgtcgag ggctgcaaac agcgtagtcg tgccattgcg cttgtaatcg
     1801 tgggtcatgg tcccggcgcg gcctcgcttc aggggcaatc cgggctgcgt gcggtcgagc
     1861 gcctggatct gggacttctc gtcgattgac aggaccaccg cgtgggcggg cggatcgatg
     1921 tagagcccga cgatgtcccg cactttggtg gcgaacgccg gatcgttcga gagcttgaaa
     1981 gtgcggatgc ggtgcggctg gaggccgtgc gaacgccaaa tacgctgtac gtacgagaga
     2041 ctgacgcctg tcgccttggc catggcgcgt cccgtccagt gggtcgtctc cccgggcggc
     2101 tcggccagcg tgagggcgac gatccgctcc cccacctcgg gcccgaatgg cacgatgcgc
     2161 gatgggcggg tcttgtcgcg aaggaggccc tcgacgcctt ccgccgcgaa gcgttcttgc
     2221 catcgccaaa cggcggtctt gctcttgcca gtccggcgca tgatggcgac cgtgccgaga
     2281 ccgtcggcgc tcgccagcac gatagcggcg cgccaaacgt gcttttgagg gctgttgcgg
     2341 tccgcgatga tagcttccag ccaatcacgg tctgcggcgg tcacgtcgac gatgatccct
     2401 gggcgcatcc ctcagactcg cacacctcgc gagcgcaggg aatccagatc cggactcgtc
     2461 cgtcaccctc aaaccactag gaagtagagc atcgtctcac atggtcggat ctggctcgcc
     2521 tttctcccgc acgatttcgc ccagaagcat cttggcgagc acct
//
LOCUS       DASQWN010000620         3872 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_969653, whole genome shotgun sequence.
ACCESSION   DASQWN010000620 DASQWN010000000
VERSION     DASQWN010000620.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 3872)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3872)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3872
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_969653"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..590
                     /locus_tag="VE686_11585"
     CDS             <1..590
                     /locus_tag="VE686_11585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016847076.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="LysR substrate-binding domain-containing
                     protein"
                     /protein_id="HYY85124.1"
                     /translation="LVHRLGRLAESQPDLDLRVSSAMHHVDFAGEDVDVAIRHGDGAW
                     PGLDAVRLCSERLFPVCSPKLVAGRRRVATAADLLSFPLLRLGDWSTWMHWFEAAGVA
                     DPTPRGPVLNRASMLIDAAVDGQGIALARTALAAADLINGRLIRPVDVSLPMANTYWV
                     VCPKVTSRTRKIAAFREWLLAEAAEDARRLQALGL"
     gene            836..1264
                     /gene="rpsF"
                     /locus_tag="VE686_11590"
     CDS             836..1264
                     /gene="rpsF"
                     /locus_tag="VE686_11590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019905376.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000314 - organellar small ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S6"
                     /protein_id="HYY85125.1"
                     /translation="MPLYEHVFMARQDVTSQQVETMVDQYRGVIEQNGGTVEKTEMWG
                     VKSLAYRIKKNRKAHFTLFNLSAPPAAVSEMERQMRINEDILRFVTIRVDALDAEPSV
                     MMQKRDRDDRKDRERGRRRDDDGPDFGGGAPVPTAATEEA"
     gene            1267..1545
                     /gene="rpsR"
                     /locus_tag="VE686_11595"
     CDS             1267..1545
                     /gene="rpsR"
                     /locus_tag="VE686_11595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018045049.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000314 - organellar small ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S18"
                     /protein_id="HYY85126.1"
                     /translation="MGFGAGGGGAGGGGGGGGGRRPFFRRRKTCPFSGANAPKIDYKD
                     TKLLSRYISERGKIVPSRITAVSAKKQRELAQAIKRARFLGLLPYVIR"
     gene            1642..2601
                     /locus_tag="VE686_11600"
     CDS             1642..2601
                     /locus_tag="VE686_11600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012332437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2232 domain-containing protein"
                     /protein_id="HYY85127.1"
                     /translation="MIPILLIGTGAGLVSALLFAVVVTGSPLALFLSFVAPLPVFIAA
                     LGWNHRAGLVAAVVGGIVVALTFRWSAGVLFALGWALPGWWLAYLALLGRPAADGTVE
                     WYPIGRLLLWLAGTAAVVTLIGVIALGSGDYDTFRTTMRRVFTSFLRTRSDAPAETGA
                     SDSFIEGLLASLPFFIAASFTMILAANLWLAAKAVAISQRLLRPWPFLPLTAMPRSAI
                     GLMLAAVVLGFGPGFVGAFGLALVGALAVAFALQGLAVLHDVSRGRPARVTILMGAYF
                     IAVFLSQIGLPVLALAGMADSAFGMRRRFGGGSGPPPSPRPKP"
     gene            2615..3184
                     /gene="rplI"
                     /locus_tag="VE686_11605"
     CDS             2615..3184
                     /gene="rplI"
                     /locus_tag="VE686_11605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012456121.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000311 - plastid large ribosomal subunit
                     [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L9"
                     /protein_id="HYY85128.1"
                     /translation="MEVILLERVAKLGQMGETVRVRDGYARNFLLARGKALRATDANK
                     QRFETQRAQLETRNLERKQEAEKVGETLNGQTFTIIRQAGETGVLYGSVSTRDLAETV
                     TAGGFSVGRDQFVLNQPLKTLGLHTVPVSLHPEVEVMVAINIARSPEEAERQARGESV
                     TAREEMDLDELGLEVGAALAEAGGDDDRG"
     gene            complement(3250..3489)
                     /locus_tag="VE686_11610"
     CDS             complement(3250..3489)
                     /locus_tag="VE686_11610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013167316.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2188 domain-containing protein"
                     /protein_id="HYY85129.1"
                     /translation="MTRITYEVVEHDGGWAYKVGDVFSEPFPSQDDARAAAERAAQEQ
                     TVPGETTGISYEDQEGRWHGEVARGGDRPETEVKG"
BASE COUNT          570 a         1408 c         1267 g          627 t
ORIGIN      
        1 ggctggtgca ccgcctcggc cggcttgccg agagccagcc ggacctcgat ctgcgcgtct
       61 cgtccgccat gcatcacgtc gacttcgccg gcgaggacgt cgacgtggcg atccggcacg
      121 gcgacggcgc ctggcccgga ctcgacgcgg tacgcctatg ctccgagcgc ctgttcccgg
      181 tgtgcagccc caagctcgtg gcgggccgca ggcgcgtcgc caccgccgcc gacctcctca
      241 gcttcccgct cctgcgcctc ggcgattgga gcacctggat gcactggttc gaggccgccg
      301 gcgtcgccga ccccacgccg cgcggcccgg tgctaaaccg cgccagcatg ctcatcgacg
      361 ccgccgtcga cggtcagggg atcgcccttg cccggaccgc gctcgcggcc gccgacctca
      421 tcaacggccg cctgatccga cccgtcgacg tgtccttgcc gatggccaac acctactggg
      481 tcgtctgccc caaggtgacc tcgcgcacgc gcaagatcgc ggcgttccgc gagtggctcc
      541 tcgccgaggc ggccgaagac gcgcgtcgcc tccaggcgct aggcctttag ggccaaggcg
      601 ttcgggttgc gcttgagcaa caaatcccct atgtgcgccg cttcgcgttc gctccggccg
      661 ggggctgaac ggacggcgct tgccgatggc gagcgtagga ttttcggatc cgtcgtcccg
      721 tgtctccgcc ttcgaacaac cgctcgggcc tcacggctcg aagggcttgg cgccgatcgg
      781 acgcgcgaac cggctccctt aaagggctga attgtaacgt aaacaagggc ccacgatgcc
      841 tctctatgaa cacgtcttca tggcgcgcca ggacgtgacg tcgcagcagg tcgagaccat
      901 ggtcgaccag taccgcggcg tcatcgagca gaatggcgga acggtcgaga agaccgagat
      961 gtggggcgtc aagtccctcg cctaccgcat caaaaagaac cgcaaggctc atttcacgct
     1021 gttcaacctc agcgcccccc cggcggcggt gagcgagatg gagcgtcaga tgcgcatcaa
     1081 cgaggacatc ctgcgcttcg tcaccatccg cgtcgacgcg ctcgacgccg agccgtcggt
     1141 gatgatgcag aagcgcgacc gcgacgaccg caaggaccgc gagcgcggtc ggcgtcgcga
     1201 cgacgacggg cctgacttcg gcggcggcgc acccgtcccg acggccgcga ccgaggaggc
     1261 ttgatcatgg gtttcggtgc tggtggcggc ggagccggtg gcggtggcgg gggcggcggt
     1321 ggccgtcgtc cgttcttccg ccgcaggaag acctgtccgt tctcgggcgc gaacgcgccg
     1381 aagatcgact acaaggacac gaagctgctc tcgcgctaca tctccgagcg cggcaagatc
     1441 gtgccgtcgc gcatcacggc ggtctcggcc aagaagcaac gcgagctcgc ccaggcgatc
     1501 aagcgcgccc gcttcctcgg cctgctgccc tacgtgatcc gataatatcg ccgtcgggcc
     1561 gcctcgcgcg gcccgaccct caaacgctgg ggcgggcatg acccgcctct aaccctgcca
     1621 gtcaggcagc gggacagcgg catgataccc attctcctca tcggcaccgg cgcgggactc
     1681 gtctcggccc ttctgttcgc ggtggtcgtc accgggtcgc cgctggcgct gttcctgtcc
     1741 ttcgtcgcgc cgctgccggt gttcatcgcc gcgctcggct ggaatcaccg cgccgggctc
     1801 gtcgccgccg tcgtcggagg catcgtggtc gcgcttacgt tccgctggag cgccggcgtc
     1861 ctcttcgcac tcggctgggc cctgcccggc tggtggctcg cctatctcgc ccttctcggc
     1921 cgccctgccg ccgacggcac cgtcgagtgg tatccaatcg gccgcctcct gctgtggctc
     1981 gccgggacgg cagcggtggt gacgctcatc ggcgtgatcg ccctcggcag cggcgactac
     2041 gacaccttcc gcaccactat gcggcgcgtg ttcacgagct tcctgcgtac gcggtccgat
     2101 gcgccggccg agacgggcgc gagcgacagc ttcatcgagg ggctcctcgc gtccctgccg
     2161 ttcttcatcg ccgcgagctt cacgatgatc ctggcggcga acctgtggct ggccgccaag
     2221 gccgtcgcaa tctcgcagcg cctcctgcgg ccgtggccct ttctgccgct gacggcgatg
     2281 ccgcgctccg ccatcgggct catgctcgct gccgtggtgc tcgggttcgg ccccggcttc
     2341 gtcggcgcct tcgggctcgc gctggtcgga gcgcttgcgg tcgccttcgc gctgcaaggc
     2401 ctcgcggtcc tgcacgacgt ctcgcgcggc cgccccgccc gcgtgacgat cctcatgggc
     2461 gcttatttca tcgccgtttt cctcagccag atcggcctgc cggtgctcgc gctcgcgggc
     2521 atggccgaca gcgccttcgg catgcgccgc cgcttcggcg gcggctccgg tccacccccc
     2581 tcaccccgac ccaaacccta aaaggagaga aatcatggaa gtcatcctgc tcgagcgcgt
     2641 ggccaagctc ggccaaatgg gcgagaccgt ccgcgtccgc gacggctacg cccgcaactt
     2701 cctcctcgcc cgcggcaagg ccctgcgcgc gacggacgcc aacaagcagc gcttcgagac
     2761 gcagcgcgcg caactcgaga ctcgcaacct cgagcgcaag caggaggccg agaaggtcgg
     2821 cgagacgctc aacggccaga ccttcacgat catccgccag gcgggcgaga cgggcgtgct
     2881 ctacggctcg gtgtcgacgc gcgatctcgc cgagaccgtg acggcgggcg ggttctcggt
     2941 cgggcgcgac cagttcgtcc tcaaccagcc tctcaagacc ctcggcctgc acaccgtgcc
     3001 ggtgtcgctg catcccgagg tcgaggtgat ggtggcgatc aacatcgccc gcagcccgga
     3061 ggaagccgag cgccaagctc gcggcgagag cgtgacggcg cgcgaggaga tggatctcga
     3121 cgagctcggc ctcgaagtcg gcgccgccct cgcggaagct ggcggcgacg acgaccgcgg
     3181 ctgatccgca ggtcgcgctc gggcccatcg agtgggcccg gggggcgcct agggctgcac
     3241 gctcgagcgc tagcccttca cctcggtctc ggggcggtcg ccgccccggg ccacctcgcc
     3301 gtgccaccgg ccttcctggt cctcgtagga aatgccggtg gtctcgcccg gcaccgtctg
     3361 ctcttgcgct gcgcgctcag ccgccgcccg cgcatcatcc tgcgatggga acggttcgga
     3421 gaagacgtcg ccaaccttgt acgcccatcc gccgtcatgc tcgacgacct cgtaggtgat
     3481 cctggtcatc tggcctcccg ggcgcggcaa acaaaacctc ttggacgcgc atatcctggc
     3541 cccatatggg cggcgcagca cgacgattgc agcgttccta gacgaggtcg acaacgcgaa
     3601 tgcgcctgat cgggcagcat cctcgaatac aagacgtgag agggcttcgg agagatggtg
     3661 cccaggggcg gcaccacaag cagctcctag gcgcctagga tatctcgcgt tttcccgctg
     3721 gcagctgcgc ggataccaac acctatacca acagatcact ttcggtgcgg aggacgatgc
     3781 cgcggccgtt gagcgctaca tcctgtgaca aggaaccgca cgcccgctcg ggcgctcgcg
     3841 agcagctctt ccgccctcgg ctgacgatcg cg
//
LOCUS       DASQWN010000621         9451 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_271574, whole genome shotgun sequence.
ACCESSION   DASQWN010000621 DASQWN010000000
VERSION     DASQWN010000621.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 9451)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9451)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9451
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_271574"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..930)
                     /locus_tag="VE686_11615"
     CDS             complement(<1..930)
                     /locus_tag="VE686_11615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015928451.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HYY85130.1"
                     /translation="MLRVSLGLVALALSLSCVQAKTLVFCSEGSPEALNPQLVTTTTG
                     MGAAKPMFNNLVEFEPGSTRLGPGLSESWTISDDGLTYTFRLRAGVKFHDGPRFHPTR
                     ALNADDVLFSLMRQWKQDHPYHRVSQARYDYFQDLGMGELLASIERVDDLTVRIRLTR
                     PDAAFLANLGMPFNSIQSAEYAALLLREGRPEQLDLEPVGTGPFSFEGFQKDVAVRYR
                     AFPDYWGGRQPIDTLVFSITPNPAVRLTKLKAGECHVMAFPNPADAARINADPTLALL
                     KQEGLNIGYLAMNTRKPPFDDVRVRRAINMAIDK"
     gene            complement(942..3224)
                     /locus_tag="VE686_11620"
     CDS             complement(942..3224)
                     /locus_tag="VE686_11620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015928452.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HYY85131.1"
                     /translation="MRISNKVALVGGIPIAIAAAIAIVAWFLLSEADRARSGAVLAGT
                     AYRDLTTVTRARDDYLSALPSDRAPHAARFDTAAQAAHDRLLALSAVARDPEQRRATE
                     ASRDALARYRDQMASLREITHGNDLLVAEMNARAAGLIGLADQARERQHASNADIIAS
                     LSERDQKLRRAREIVTRAYELRGTAADAARDGLAVEDARLATARLRNAAEDLASMLGE
                     GEEAASAQELRDLIRPLTAEGADEAGRDVASARLAAWVERQIKLHATDQRAVHEELAE
                     LLTYSVQAAETEQATQNIAIQTLKLGRRAADALAGRDADATGRVVDESGALSETMAAL
                     PISPLIQSEMIDAMKRWREGLATTGEGLRRQNRLLAAMDRTASDMIGAATAVDAIFTG
                     DADRMGKLVRTILVLGAALGLLVGGGTALVVARSITGPLLELKNRMIELAADPTQRLS
                     FGTRRRDELGSMARAANYFVTEIGRRERALRDAKDEVDRTLAELKRTQADLIQAEKLA
                     SLGQLVGGVAHEINTPVGIALTTSTTLDREFRRLEEVARTGKVSRSELTRIAGRLTEG
                     GRLLFANLTRAVDLIYSFKQVAADQASGERRRFRVKEWAHELVTSLGPMLRKSGHEVV
                     IDCPDELTIDTYPGALAQVLTNLIANAVSHAYQPGVAGRLSVRFARRDDGTIRIVFAD
                     DGRGIPADLIGRVFDPFFTTGRDRGSTGLGLHIVYNLVTKTLQGRVDVESEPGAGTRF
                     TIELPVTVAEPAPEPERMSA"
     gene            complement(3410..4198)
                     /locus_tag="VE686_11625"
     CDS             complement(3410..4198)
                     /locus_tag="VE686_11625"
                     /inference="COORDINATES: protein motif:HMM:NF024986.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pentapeptide repeat-containing protein"
                     /protein_id="HYY85132.1"
                     /translation="MRRHASFPEALPKAVRALCGPVAAIVLVLIPGPTYAGCGDHPGP
                     KVDWTGCSKPRLLLAKEDLTGAVLAKSDLGSTNLSQAKLPGAKLTEADLSFAKLDGAD
                     LSKADLSKAMGTRTDFTGANLTGANLAGADLSRSKFMRVKAAGARFVKSELNRSDFSG
                     ADLTQADLSRAELARVLFATAKVSGVTFALSNLARADLSHLDLSGVNLTDAYLMRTQL
                     AGANLARATGVTQAQLDDACGSAETKLPPNTTAPKTWPCGEEPD"
     gene            4354..5208
                     /locus_tag="VE686_11630"
     CDS             4354..5208
                     /locus_tag="VE686_11630"
                     /inference="COORDINATES: protein motif:HMM:NF012707.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transporter substrate-binding domain-containing
                     protein"
                     /protein_id="HYY85133.1"
                     /translation="MDMRSRTRGLRALAGLAAVCVATAAVAQSGPLKTAVDGTFAPHA
                     FPDMKGGVQGFNVDLAKEIGRKLKREVTVDSAQFSGLLPALQAGTYDFIIAPVTVTKE
                     RAENLLFPEGYLNTDFQFLVKKDAPDVKSLEDFRGKVISVNRGSAYDSWARELEPKIG
                     WKVESFGTQTDAVQAVIAGRAYANVAGNTVVAWAAKQNPQVKLSYLHSTGLVWSAAVR
                     KDNPEMRAQLENAIECLKQEGAIAKLHEQWFGIPPAPGAAAVTVSAGTGVPDLPGYDP
                     TPRTPKCD"
     gene            5250..5975
                     /locus_tag="VE686_11635"
     CDS             5250..5975
                     /locus_tag="VE686_11635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006201493.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter ATP-binding protein"
                     /protein_id="HYY85134.1"
                     /translation="MLQVRGLVKRFGALEVLKGIDFSVAPQELVFVIGPSGSGKSTLL
                     RCCNRLEEPDEGSIVVDGVELMDPKCDLNAMRRRIGMVFQSFNLYPHLTALGNVTLAL
                     RKVIGRSRREADELGRAALDRVGLIDKVAAYPGELSGGQQQRVAIARALALEPKIMLF
                     DEPTSALDPELVGSVLATMRDMRESGLTMVVVSHEMRFARDAADRVVFMEAGRIVEEG
                     PPDRMFGAPQNARTRAFVSELTR"
     gene            5983..6666
                     /locus_tag="VE686_11640"
     CDS             5983..6666
                     /locus_tag="VE686_11640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019404523.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0006865 - amino acid transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HYY85135.1"
                     /translation="MSGFERFVDTFFNARLVARYWPDILSGMLVTIEIAVGVVVAGVG
                     LGLVLAMVRAYRNRAVNAVIVLFVDIFRALPPLVLILIMYFGLPGVGLNLSAYVVLWL
                     ALSLVLAAFAEEVFWAGILSVRKGQWDAARSTGLGFGQTLLSVILPQAVRLAVPPLTN
                     RTIAITKNTALGSVIGVGEVINQAQTAVSLAGNATPLMMAAIGYLIIFAPVVALGSVV
                     EKRFAWRRA"
     gene            6666..7331
                     /locus_tag="VE686_11645"
     CDS             6666..7331
                     /locus_tag="VE686_11645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019404524.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0006865 - amino acid transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HYY85136.1"
                     /translation="MEAFRQQFLNVDIMMQAWPIILQGLQMTLLLCLAVIPLGLIGGL
                     IVAIASLSRSRTVRWTVRGFNDLFRALPPLVVLILLYSGLPFAGVRLSPFAAVCLAFL
                     LNNSSFYGEIYRAGIESIGRGQWEAARSTGLNARQTFTSVILPQAVRNVVPDLVSNTV
                     EVVKLTSIASVVSFTELLYAADMARSVTFNTSPIVLAALIYLVILWPVVRLMSRLEHR
                     VAA"
     gene            7344..8267
                     /locus_tag="VE686_11650"
     CDS             7344..8267
                     /locus_tag="VE686_11650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018273172.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-carbamoyl-D-amino-acid hydrolase"
                     /protein_id="HYY85137.1"
                     /translation="MRNVRIAAAQLGPIQKDDSRQVVVSRMIDLMDEAKGQGADLIVY
                     PELALTTFFPRWHYEDRAEADFWFEREMPNAATRPLFERAREYGMAMSFGFAELTPDG
                     QHFNASILVEKDGRIVGKYRKVHLPGHEEFDPERTHQHLEKRYFEPGDLGFPVWRMLG
                     GIVGMCICNDRRWPETYRVMGLQGVELVVLGFNTPSVNSQKAGEAIEKRMFHHRLSLQ
                     AGAYQNATWVVAVAKAGTEDGHHCMGGTCIVNPDGEVVAELEGEEDGILVHDCDLDAT
                     RFGKETIFDFKRHRRIEHYGRITSQVGVELP"
     gene            8497..9150
                     /locus_tag="VE686_11655"
     CDS             8497..9150
                     /locus_tag="VE686_11655"
                     /EC_number="1.5.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018647568.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_function: GO:0016646 - oxidoreductase activity, acting
                     on the CH-NH group of donors, NAD or NADP as acceptor
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flavin reductase family protein"
                     /protein_id="HYY85138.1"
                     /translation="MTAEKAPFTVAFADLEPRERYKLLCATVVPRPIALVTSVGSDGV
                     VNAAPFSFFNVFSEDPPLIVLGLQHKPEEARKDTTRNIAETGVFVVNLVDEALAEGMN
                     ICAIDFPPEASEIEAARLDLLPGVDVAVPRIAQAPFALECRRTVALAFGPQRELLVGE
                     VLRLHAREGLMDPARLRVETDAYHPVGRLFGHGYARQRDRFELKRESYEEWRARRER"
     gene            9213..>9451
                     /locus_tag="VE686_11660"
     CDS             9213..>9451
                     /locus_tag="VE686_11660"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY85139.1"
                     /translation="MPISAVTRAGGFAGTERAMELESEQTTGQTFRVTSTPEGRLGVA
                     VLVHGKPSLVLWLGSENQPAAERLALHLETQVDRVS"
BASE COUNT         1382 a         3215 c         3361 g         1493 t
ORIGIN      
        1 cttgtcgatg gccatgttga tggcgcgccg gacgcgcacg tcgtcgaagg gcggctttcg
       61 cgtgttcatc gccagatagc cgatgttgag gccctcctgc ttgaggaggg cgagcgtcgg
      121 gtcggcgttg atgcgcgccg cgtcggccgg gttgggaaag gccatgacgt ggcactcgcc
      181 ggccttgagc ttcgtcaggc gcacggcagg gttcggcgtg atcgagaaca cgagcgtgtc
      241 gatcggctgc cgcccgcccc aatagtccgg aaaggcgcgg tagcgcaccg cgacgtcctt
      301 ctgaaagccc tcgaacgaga acgggccggt gccaaccggc tcgagatcga gctgctcggg
      361 acgtccctcg cgcaggagaa gcgccgcgta ttcggccgac tggatcgagt tgaagggcat
      421 gccgaggttg gcgaggaagg cggcatcggg tcgggtgagc cggatgcgga cggtcaggtc
      481 gtcgacccgc tcgatggaag ccaggagctc gcccatgccg aggtcctgga agtagtcgta
      541 tcgggcttgg ctgacgcggt ggtaggggtg gtcctgcttc cactgccgca tgagcgagaa
      601 caggacgtcg tcggcgttga gcgcgcgcgt cgggtggaag cgcgggccgt cgtggaactt
      661 cacgcccgcc cgcaggcgga aggtataggt caggccatcg tccgatatgg tccacgactc
      721 ggagaggcct ggcccgagcc gcgtcgagcc cggctcaaac tcgacgagat tgttgaacat
      781 gggcttggcg gcgcccatgc cggtggtggt ggtcacgagc tgcgggttca gcgcctcggg
      841 gctgccctcg gagcagaaca ccagcgtctt ggcctggacg cacgagagcg agagcgcaag
      901 cgcgacaagg ccgagggaca cacgcagcat ggctcttcct ctcacgccga catccgctcc
      961 ggctcgggcg cgggttccgc aaccgtcacc ggcagctcga tggtgaagcg ggtccccgcc
     1021 ccgggctcac tctcgacgtc gacccggccc tgcagggtct tggtcacgag gttatagacg
     1081 atgtgcagcc cgagcccggt gctgccgcgg tcgcggccgg tggtgaagaa cgggtcgaag
     1141 acccgcccga tgaggtcggc cgggatgccg cgcccgtcgt cggcgaagac gatgcggatc
     1201 gtgccgtcgt cacgccgcgc gaagcggacc gagaggcggc ccgcgacacc cggctggtag
     1261 gcgtgcgaga ccgcgttggc gatgaggttg gtgagcacct gcgcgagcgc acccgggtag
     1321 gtgtcgatgg tcagctcgtc gggacagtcg atgacgactt cgtggccgct cttgcgcagc
     1381 atcggcccga ggctggtgac gagctcgtgc gcccattcct tgacgcggaa gcggcggcgc
     1441 tcgccgctcg cctggtcggc ggcaacctgc ttgaagctgt agatgagatc gacggcgcgg
     1501 gtcaggttgg cgaagagcag ccgtccgccc tcggtgaggc gaccggcgat ccgggtgagc
     1561 tcggagcgcg agaccttgcc ggtccgtgcc acctcctcga gccgccggaa ctcgcggtcg
     1621 agggtggtgg aggtcgtgag cgcgataccg acgggcgtgt tgatctcgtg cgcgaccccg
     1681 ccgacgagct gcccgaggga ggcgagcttc tcggcctgga tgagatcggc ctgcgtgcgc
     1741 ttcagctcgg ccagggtgcg gtcgacctcg tccttggcgt cgcgcagggc gcgctcgcgg
     1801 cggccgatct cggtgacgaa gtagttcgcg gcgcgggcca tggagccgag ctcgtcgcgt
     1861 cgccgcgtgc cgaaggagag gcgctgcgtc ggatcggccg caagctcgat catacggttc
     1921 ttgagctcga gcaacggccc ggtgatcgag cgcgccacca cgagcgccgt cccgccgccg
     1981 acgaggaggc cgagggcggc gccgaggacc aggatggtgc gcacgagctt gcccatgcgg
     2041 tcggcgtcgc ccgtgaagat cgcgtcgact gcggtcgcgg cgccgatcat gtccgacgcg
     2101 gtccggtcca tggcggcgag cagccggttc tgacggcgca ggccctcgcc ggtggtggcg
     2161 agtccctcgc gccaacgctt catggcgtcg atcatctcgg actggatcag gggcgagatc
     2221 ggcagcgccg ccatggtttc cgagagggcg ccgctctcgt ccacgaccct gcccgtggcg
     2281 tcggcgtccc gtcccgcgag ggcgtcggcg gcccgccggc cgagcttgag cgtctggatt
     2341 gcgatgttct gggtggcctg ctcggtctcg gcggcctgga cggagtaggt caggagctcg
     2401 gcgagttcct catgcacagc gcgctgatcg gtcgcgtgga gcttgatctg ccgctcgacc
     2461 cacgcggcga ggcgcgccga ggcgacgtcg cgccccgcct catcggcgcc ttcggcagtc
     2521 aggggccgga tgaggtcgcg cagctcctgc gcgcttgcgg cctcctcccc ctcgccgagc
     2581 atgctcgcga gatcctcggc ggcattgcgc aggcgggccg tcgcgagccg cgcatcctcg
     2641 acggccagtc cgtcacgggc ggcgtccgcg gcggtgccgc gcagctcgta ggcgcgggtg
     2701 acgatctcgc gggcacgacg gagcttctgg tcgcgctcgc tcaaagaggc gatgatgtcg
     2761 gcgttcgagg cgtgctggcg ctcgcgggcc tggtcggcga gaccgatcag gccggccgcg
     2821 cgggcgttca tctcggcgac gaggagatcg ttgccgtgcg tgatctcgcg caggctcgcc
     2881 atctggtcgc ggtagcgcgc gagcgcgtcg cgcgacgcct cggtggctcg gcgctgctcg
     2941 ggatcgcgcg ccacggccga gagggcgaga aggcggtcgt gcgcggcctg ggcggcggtg
     3001 tcgaaccgcg ccgcatgggg cgcgcggtct gagggcagcg cgctgagata gtcgtcacgc
     3061 gcgcgggtga cggtggtcag gtcgcggtac gccgtcccgg cgagcacggc gccgctgcgc
     3121 gcccggtccg cctcgctgag gaggaaccag gcgacgatgg cgatcgcggc ggcgatcgcg
     3181 atcgggatgc ctccgaccag cgcgactttg ttgcttatcc gcatgcagga accggttgcc
     3241 gtgaaatccc acgacacttc acgcccagcg tgtctatccg actttaccgc gcgcgcggaa
     3301 ggggcatgcc gcgttcggcc ggcccggcca acacttgatt gttgtgcaag cccttagcgg
     3361 gcagccgctt gggagctctc gctcgagctt cggcaaagcg tcaaggcggt cagtccggct
     3421 cctcgccgca aggccaggtc ttgggggccg tggtgttggg cgggagcttc gtctcggcgc
     3481 tgccgcaggc atcgtcgagc tgcgcctggg tcacgccggt ggcccgggcc aggttcgcgc
     3541 cggcgagctg cgtgcgcatg aggtaggcgt ccgtcaggtt cacgcccgag agatcgaggt
     3601 gactcaggtc ggcgcgcgca aggttggaca gcgcgaaggt cacacccgac accttggcgg
     3661 tcgcgaacag cacgcgggcg agctcggccc gggacagatc ggcctgggtg aggtcggccc
     3721 cgctgaagtc ggagcggttc agctccgact tgacgaagcg cgcgcctgcc gccttcacgc
     3781 gcataaactt cgaccggctg agatccgccc cggcgaggtt cgcacccgtg aggttggcgc
     3841 ccgtgaagtc ggtgcgcgtg cccatggcct tcgatagatc ggccttggag agatcggcgc
     3901 cgtcgagctt ggcgaagctg agatcggcct ccgtgagctt cgccccgggg agcttggcct
     3961 gggacagatt ggtggagccg aggtcggatt tcgccagcac ggcgccggtc aggtcctcct
     4021 tggccaggag aaggcgtggc ttcgagcagc ccgtccaatc caccttcggg ccgggatggt
     4081 cgccgcagcc ggcgtatgtc ggccccggga taaggacgag gacgatcgcg gcgaccgggc
     4141 cgcagagggc gcgtacggct ttgggcagcg cctcggggaa gctggcgtgg cggcgcatgg
     4201 gacctcggca agcgctcgga agcggtgggc aacggtaccg ggcgtgccgc ggcctgacaa
     4261 tcgggcgggg ccggacctcg cgggtgcttg tcgcgccgcg agatcgcggc atagagttcg
     4321 cccccggccg aagaaccggg atcggagggg cagatggaca tgcgttcaag gacgagaggg
     4381 ctgcgcgcgc tggcgggcct tgcggcggtt tgcgttgcga cggccgcggt cgcgcagtcg
     4441 ggtccgctca aaacggccgt cgacggcacc ttcgcgccgc acgcctttcc ggacatgaag
     4501 ggcggcgtgc agggcttcaa cgtcgatctc gccaaggaga tcggccgtaa gctgaagcgc
     4561 gaggtcacgg tggattccgc ccagttctcg ggcctcctgc ccgccctgca ggccggcacc
     4621 tacgacttca tcatcgcgcc cgtcacggtg accaaggagc gggccgagaa cctcctgttc
     4681 cccgagggct acctcaacac ggacttccag ttcctggtca agaaagacgc ccccgacgtg
     4741 aagtcgctgg aggacttcag gggcaaggtg atctcggtca accgcggctc ggcgtacgac
     4801 agctgggcgc gcgagctcga gccgaagatt ggctggaagg tcgagtcgtt cggcacgcag
     4861 acggacgccg tgcaggcggt gatcgccggg cgggcctatg ccaacgtcgc gggcaacacg
     4921 gtcgtcgcct gggcggcgaa gcagaacccg caggtcaagc tctcctacct gcactccacc
     4981 ggcctcgtgt ggtcggcggc ggtgcgcaag gacaatccgg agatgcgggc gcagctcgag
     5041 aacgccatcg agtgcctgaa gcaggaaggc gccatcgcca agctgcacga gcaatggttc
     5101 gggatcccgc ccgcgcccgg cgccgcggcc gtgacggtct cggccggcac cggcgtcccc
     5161 gacttgccgg gctacgatcc gaccccgcgc acgccgaagt gcgactagct cccgacgctc
     5221 ccggcgccgc caacgggagc cagcccgcga tccttcaggt tcgcgggctg gtgaagcgtt
     5281 tcggcgcgct cgaggtcctg aagggcatcg acttctccgt cgcgccgcag gagctcgtct
     5341 tcgtcatcgg cccgtccggg tcgggcaaga gcacgttgct gcgctgctgc aaccggctcg
     5401 aggagccgga cgagggctcg atcgtggtcg acggcgtcga gctcatggac ccgaagtgcg
     5461 acctcaacgc catgcgccgg cgcatcggca tggtgttcca gagcttcaac ctctacccgc
     5521 acctgacggc gctcgggaac gtgacgctcg ccttgcgcaa ggtcatcggg cgcagccgcc
     5581 gcgaggccga cgagctcggc cgcgcggccc tcgaccgggt tgggctcatc gacaaggtcg
     5641 ccgcctaccc gggcgagctc tcgggcgggc agcagcagcg ggtcgccatc gcgcgggcgc
     5701 tggcgctcga gccgaagatc atgctgttcg acgagccgac ctcggcgctc gacccggagc
     5761 tcgtcggctc ggtgctggcc accatgcgcg acatgcgcga gagcgggctc accatggtgg
     5821 tggtgtcgca cgagatgcgc ttcgcccgcg acgcggccga ccgggtcgtg ttcatggagg
     5881 ccgggcgcat cgtcgaggag ggcccgcccg accgcatgtt cggcgcgccg cagaacgcgc
     5941 gcacccgggc cttcgtctcc gagctcacgc ggtgatcctg gcgtgagcgg gttcgagcgt
     6001 ttcgtcgaca cgttcttcaa cgcgcgtctc gtggcgcgct actggcccga catcctctcg
     6061 ggcatgctgg tcaccatcga gatcgccgtc ggggtggtgg tcgccggcgt aggcctcggc
     6121 ctcgtgctcg cgatggtgcg cgcctaccgc aaccgcgccg tcaacgccgt catcgtcctc
     6181 ttcgtcgaca tcttccgcgc cctgccgccg ctggtgctga tcctgatcat gtacttcggc
     6241 ctccccggcg tcgggctgaa cctgtcggcc tacgtggtgc tgtggctcgc gctgtccctc
     6301 gtgcttgcgg ccttcgccga agaggtgttc tgggccggca tcctgtcggt gcgcaaaggc
     6361 cagtgggacg ccgcgcgctc gaccggcctc ggcttcggcc agacgctcct gtcggtgatc
     6421 ctgccccagg ccgtgcgcct cgccgtgccg ccgctcacca accgcaccat cgccatcacc
     6481 aagaacacgg cgctcggcag cgtgatcggc gtcggcgagg tcatcaacca ggctcagacg
     6541 gctgtgtcgc tcgccggcaa cgcgacgccg ctcatgatgg cggcgatcgg ctacctcatc
     6601 atcttcgccc cggtggtggc gctcgggagc gtcgtcgaga agcgcttcgc ctggcggagg
     6661 gcctgatgga ggccttccgc cagcagttcc tcaacgtcga catcatgatg caggcgtggc
     6721 ccatcatcct gcagggcctg cagatgacgc tgctcctgtg cctggcggtg atccccctcg
     6781 ggctcatcgg cgggctcatc gtcgcgatcg cgagcctgtc gcgcagccgc acggtgcgct
     6841 ggaccgtgcg cggcttcaac gacctgttcc gcgccctgcc cccgcttgtg gtgctgatcc
     6901 tcctgtactc cggactgcct ttcgcgggcg tgcggctgtc gcccttcgca gcggtttgcc
     6961 tggccttcct cctcaacaat tcgagcttct acggcgagat ctaccgggcc gggatcgagt
     7021 ccatcggccg cggacaatgg gaggccgccc gctcgaccgg gctcaacgcg cgccagacct
     7081 tcacgtcggt gatcctgccg caggcggtcc gcaatgtggt gccggatctc gtctccaaca
     7141 ccgtcgaggt ggtgaagctc acgtccatcg cgagcgtggt ctccttcacc gagctcctct
     7201 atgccgccga catggcgcga tcggtcacct tcaacacctc cccgatcgtg cttgcggcct
     7261 tgatctacct cgtcattcta tggcctgtcg tgcggctcat gagccgcctc gagcaccgcg
     7321 tagcagcctg aaggaagtca cccatgcgca acgtccgcat cgccgccgcc cagctcgggc
     7381 cgatccagaa ggacgacagc cggcaggtcg tcgtcagccg catgatcgac ctcatggacg
     7441 aggccaaggg gcaaggcgcc gacctcatcg tctacccgga gctcgcgctg accacgttct
     7501 tcccgcgctg gcactacgag gaccgcgccg aggccgactt ctggttcgag cgcgagatgc
     7561 cgaacgccgc gacgcgcccg ctgttcgagc gcgcgcggga gtacggcatg gccatgtcgt
     7621 tcggcttcgc cgagctgacg cccgacgggc aacacttcaa cgcctcgatc ctcgtcgaga
     7681 aggacggccg catcgtcgga aagtaccgca aggtccacct gcccgggcac gaggagttcg
     7741 acccggagcg gacgcaccag cacctcgaga agcgctactt cgagcccggc gacctcggct
     7801 tcccggtgtg gcggatgctc ggcggcatcg tcggcatgtg catctgcaac gaccggcgct
     7861 ggcccgagac ctaccgcgtc atgggcctgc agggcgtcga gctcgtcgtg ctcggcttca
     7921 acacgccgtc ggtgaactcg cagaaggccg gcgaggcgat cgagaagcgc atgttccatc
     7981 atcgcctctc gctccaggcc ggcgcctatc agaacgccac ctgggtcgtc gccgtcgcca
     8041 aggccggcac cgaagacggc caccactgca tgggtggaac ctgcatcgtg aaccccgacg
     8101 gcgaggtcgt tgccgagctc gagggcgagg aggacggcat cctggtgcac gactgcgacc
     8161 tggacgcgac gcgcttcggc aaggagacga tcttcgactt caagcgccac cgtcgcatcg
     8221 agcactacgg ccgcatcaca tcccaggtcg gcgtcgagct gccgtgagca ccaagcagtc
     8281 atcctcgggc ggagccgaag gcggagaccc gaggacccca tgggcattgc agctcatccc
     8341 tccccgggag gggagggcgg agacgggcgc gtcagcgccc gcccgggtgg ggcggagcca
     8401 cggtacaagg cgatcagctc agggcttccg ccccaccccg ctcgcgcctg caggcgcgag
     8461 tcgccctccc ctcgcgggga gggatcgcgc gtgagcatga cggctgagaa ggcccccttc
     8521 accgtcgcct tcgcggacct cgagccgcgc gagcgctaca agctcctgtg cgccaccgtc
     8581 gtgccgcgcc ccatcgccct cgtgaccagc gtcggctcgg acggcgtcgt caacgccgcc
     8641 ccgttcagct tcttcaacgt cttttccgag gacccgcccc tcatcgtgct cgggttgcag
     8701 cacaagcccg aggaggcgcg caaggacacg acccgcaaca tcgccgagac gggcgtgttc
     8761 gtcgtgaacc tcgtcgacga ggctctcgcc gaaggcatga acatctgcgc catcgacttc
     8821 cccccggagg caagcgagat cgaggccgcc cgcctcgacc tcctgcccgg cgtcgacgtc
     8881 gcggtgccgc ggatcgcgca ggcgcccttc gccctcgaat gccgccgcac ggtcgcgctc
     8941 gccttcggcc cgcagcgcga gctcctcgtc ggcgaggtcc tgcgcctgca cgcccgcgag
     9001 ggcctcatgg atccggcacg cctgcgcgtc gagacggacg cctaccaccc cgtcggccgc
     9061 ctcttcggcc acggctacgc ccgccagcgc gaccggttcg agctcaagcg cgagagctac
     9121 gaggagtggc gggcaaggcg cgagcggtag gccagcgcgc cattctgacg ctgccatctc
     9181 cttcatgatc acgactcggg ggtgccgcac ggttgcccat ttcggccgtc acccgggccg
     9241 gcggatttgc aggcacggag cgggcaatgg aattggagtc ggagcaaacg acgggtcaga
     9301 cgttccgcgt cacgagcacg cccgagggac ggcttggcgt cgcggtcttg gtgcacggta
     9361 agccgagcct cgttctgtgg ctcgggtcgg aaaaccagcc tgcggccgaa cgcctcgcgc
     9421 ttcatctcga aactcaggtc gacagagttt c
//
LOCUS       DASQWN010000622         3190 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_969950, whole genome shotgun sequence.
ACCESSION   DASQWN010000622 DASQWN010000000
VERSION     DASQWN010000622.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 3190)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3190)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3190
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_969950"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1549
                     /locus_tag="VE686_11665"
     CDS             <1..1549
                     /locus_tag="VE686_11665"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY85140.1"
                     /translation="PIVVVALPVTAHLVSPLIALALAGLVGVLLALYATFTVPATLLG
                     VYLFQNAVVATISPALDGPDDFNRVRAYNFVLTVAIWLTLVTVAWVNLRSLPRTLRQL
                     LAATFIPLIFIGVYLVAGLLTDPRSAVVYLRNLVTPTLLFQACLVAAVLSPGALQRTL
                     LPIGALAIAYGYAELLWRDGLYGLLNINSYLALRAQQEGDAAYWVAQMQETGRVMRSM
                     HDAFRVTLFNTPLLSDFDIELYRLLGPNSHSISYAYALTFFSLMFVCQRKFLMGLAAV
                     PLILFIGSKGAVIALVLVIVGCSVSGYLRRPVLMGAFVVVVAAYVGAALVIGMQIGDY
                     HVLGFWGGVNGFLQNPIGHGLGAGGNLSAATTRIDWSHAQQVGATGRAVESAVGVLLF
                     QMGVASMVVLGGYAVIARASWRAAAAAQEHTSRVAAFGILVLLGNAVLQEEALFAPLA
                     MGSFVIAAALRIGAAEAARAAAPVTSRSVGCEASILKAALGPRAIRPRGLLARRMPLG
                     EQLQPRA"
     gene            1691..1764
                     /locus_tag="VE686_11670"
     tRNA            1691..1764
                     /locus_tag="VE686_11670"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1723..1725,aa:Gly,seq:ccc)
     gene            2288..2755
                     /locus_tag="VE686_11675"
     CDS             2288..2755
                     /locus_tag="VE686_11675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010913782.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MucR family transcriptional regulator"
                     /protein_id="HYY85141.1"
                     /translation="MDAGNPSDSAGTNLTELTADIVAAYISHNSVRAEDLAGLINTVH
                     AALGGVNSGAAAPAEAEKRQPAVPVKKSITPDFLISLFDGKKYKSLKRHLRTSYNMTP
                     EQYREYFNLPRDYPMVAPNYAKARSDLAKSMGLGQQRKKSAAKSGGRRARKAA"
     gene            2781..>3190
                     /locus_tag="VE686_11680"
     CDS             2781..>3190
                     /locus_tag="VE686_11680"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY85142.1"
                     /translation="MTAGLRFHHGSGVARFSMQRPNLDTLQQSLAAARAMVANVPDPI
                     VLVGPDGHVAETNAAAHATFPTLRLGYPLSYALRAPAILDAVAAAVPGTTVSVEHLTR
                     VPTERTFDVQITGIALGASERGVMLLFGDLTEARR"
BASE COUNT          489 a         1101 c         1020 g          580 t
ORIGIN      
        1 tcccatcgtc gtcgttgcgc tccccgtgac ggcacacctc gtcagcccgc tgatcgccct
       61 ggcactggca ggcctcgtcg gtgtgctgct ggcgctctat gcgaccttca cggtgcccgc
      121 gacattgctg ggcgtctacc tcttccagaa tgccgtcgtg gcgacgatct cgcccgcatt
      181 ggatggtccg gacgatttca accgcgtgcg ggcctacaac ttcgtgctga cggtcgcgat
      241 ctggctgacg ctggtcacgg ttgcctgggt caacttgcgc agcctgccca gaacgttgcg
      301 acagcttctc gctgcgacct tcatcccgct catcttcatc ggagtatacc tggttgccgg
      361 tctgctgacc gacccccgaa gcgccgttgt gtacctgcgc aacctcgtca ctccgacgct
      421 gctcttccag gcctgcctcg ttgcggctgt cctgagcccc ggggcattgc aacgcaccct
      481 gttgcccatc ggcgcgctgg cgatcgccta cggctacgcc gagctcctat ggcgggacgg
      541 cctgtacggg ctgctgaaca tcaactccta tcttgcgctg cgcgcgcagc aggaaggtga
      601 cgccgcctac tgggtcgccc agatgcagga gaccggccgc gtcatgcgca gcatgcacga
      661 tgcgttccgg gtcaccctgt tcaatacgcc tctcctgtcg gacttcgaca tcgagctgta
      721 tcggcttctc ggccccaatt cccactcgat cagctatgct tacgcgctga ccttcttctc
      781 tctcatgttt gtctgccagc ggaagtttct gatggggctg gcggctgtcc cgctcatcct
      841 cttcatcggc tcgaagggag ccgtcatcgc cctggtcctc gtcatcgtcg gctgcagcgt
      901 cagcggttac ctgcgccggc ctgtgctgat gggagcgttt gtcgtcgtcg tggcggccta
      961 cgtcggcgca gcactcgtga tcggaatgca gatcggcgac taccacgttc tcggcttttg
     1021 gggcggcgtg aacgggtttc tgcagaaccc gatcggacac ggcctcggcg ccggcggcaa
     1081 cctgtcggcc gcaacgaccc gcatcgattg gagccatgcc cagcaggtcg gagcgacggg
     1141 gcgggccgtc gagagcgcgg tcggcgtact cctattccag atgggagttg cttccatggt
     1201 cgtgctcggc ggctacgcgg tgatcgcgcg tgcgtcatgg cgcgccgccg cagcagcgca
     1261 ggaacacacg tcccgcgtgg cggcattcgg catcctggtc ctgctcggca atgcggtgtt
     1321 gcaggaggag gcccttttcg cgcctctggc gatggggtcg ttcgtgatcg ccgcagcgct
     1381 gcggatcggc gctgccgagg cggcgagagc ggccgccccg gtgacctcgc gttcggtggg
     1441 ctgcgaggcg agcatcctga aagctgccct cgggccgcgg gccattcgcc cgcgcgggct
     1501 gctggcgcgc cgcatgcccc tcggtgagca gttgcagccg cgggcctgaa cgcgctgcat
     1561 cggagggtta tggcgtgttg ggaggcgacg agcgacacgc ggcggcccgg ctcgccttgc
     1621 gcccggcggc gcgcggcggt acacaccggt tgcacgaaac cggcgctaag atggagccga
     1681 attcggcact gcgggcgtag ttcagtggta gaacgtcagc ttcccaagct gaatatgcgg
     1741 gttcgattcc cgccgcccgc tccacctctt cctgaaggct gcagttcctg aatgctccag
     1801 gcgccgtgcg ggtcgcgcgg cgccggggtt ggcgcgggcg ccggacctcg agcgcgagcg
     1861 ctcgcgaccg gggcgcctcc tcgacggcgt gcagacttcg cgccgagaac gcaggtgacc
     1921 attccaccgc gacccccgcg gccgtgacgg cgagaactgc cttcgcatca tccggccccg
     1981 cgtcgctatg cttgtggtgt ccacgtcgtc ccatgacgtt gcatctctgc gactttgccg
     2041 agagagcgtg cttgtccctc gtcgaagcgg acgcaagtgc tgcgcagtgc ggaagcgccc
     2101 tgtcggctcg ccgccgtagg ggcagggcgc cgccaggcgc cgtgcttctc gcgcaaccag
     2161 cgtcggctcc aagcagtcgc gcgatggaat cttgaccttt cggttttagt gtatagagag
     2221 gtcttgttaa accgaccgaa gacgtcggca actagaagct atcatcactc acaatcgagg
     2281 aacttcaatg gacgccggaa acccttccga cagcgcgggc acgaacctta ccgaactcac
     2341 ggccgacatc gtcgccgcct acatcagcca caactcggtg cgggcggaag accttgccgg
     2401 tctgatcaac accgttcatg cagcgctcgg cggcgtcaac agcggtgcgg ccgctcccgc
     2461 cgaagccgag aagcggcagc cggccgtgcc ggtgaagaag tccatcacgc ctgacttcct
     2521 gatcagcctc ttcgacggca agaagtacaa gagcctcaag cgccacctgc gcacgagcta
     2581 caacatgacc ccggagcagt atcgggagta cttcaacctg ccgcgcgact atcccatggt
     2641 cgccccgaac tacgccaagg cccgctccga tctcgccaag agcatgggcc tgggccagca
     2701 gcgcaagaag agcgctgcga agagcggcgg tcggcgcgcc cgcaaggccg cctagccgct
     2761 acctgtctcg ggagcccggc atgactgccg ggctccgctt ccatcacggc agcggcgtcg
     2821 caaggttttc gatgcagagg ccgaacctcg acacactgca acagagcctt gcggccgccc
     2881 gcgccatggt ggccaacgtt cccgatccga tcgtccttgt cggaccggac ggccacgtcg
     2941 ccgaaaccaa tgcggcggcg catgcgacct tcccgacgct caggctcggc taccccctgt
     3001 cctacgcgct gcgggcgccc gcgatcctgg acgccgtcgc cgccgcggta cccggcacga
     3061 cggtcagcgt cgagcacctg acgcgggtcc cgacggagcg gacgttcgac gtccagatca
     3121 ccggcatcgc gctcggcgct tcagaacgtg gcgtcatgct gttgttcggt gatctcaccg
     3181 aagcccggcg
//
LOCUS       DASQWN010000623         2488 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_473464, whole genome shotgun sequence.
ACCESSION   DASQWN010000623 DASQWN010000000
VERSION     DASQWN010000623.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2488)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2488)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2488
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_473464"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1255)
                     /gene="tyrS"
                     /locus_tag="VE686_11685"
     CDS             complement(<1..1255)
                     /gene="tyrS"
                     /locus_tag="VE686_11685"
                     /EC_number="6.1.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009490942.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004831 - tyrosine-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006437 - tyrosyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine--tRNA ligase"
                     /protein_id="HYY85143.1"
                     /translation="MSGPRSDFLQVLHERGYVHQCSDVAGLDAKAQAGEVVAYVGYDC
                     TAPSLHVGHLLSIMMLHWLQETGGKPITLMGGGTTRVGDPSGRDESRKLLTIEQIEAN
                     KDAIKGVFSRFLRFGAGRTDALMADNAEWLAPLNYIEFLRDVGRHFSVNRMLSMESVK
                     IRLEREHELSFIEFNYMILQAYDFSELARRYGCILQMGGSDQWGNIVNGIDLGRRMGT
                     PQLYALTCPLLTTASGAKMGKTAAGAVWLNPDLLSPYDYWQFWRNTEDADVGRFLKLF
                     TTLPMSEVGRLQALGGAEVNEAKKVLATEATALLHGREAAEAAAETARKTFEQGTLAE
                     SLPTVEVPAAVLDAGLGVLTAFGPEYARLVPSTSEARRQVKGGGLRVNDAAVTDERAV
                     LRGSDLTAEGVIKLSFGKKRHVLLRA"
     gene            1396..2370
                     /locus_tag="VE686_11690"
     CDS             1396..2370
                     /locus_tag="VE686_11690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015930715.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HYY85144.1"
                     /translation="MSSHAAAPNPPQAVALPADPAAAPVRGASLPRQRPALGIGLVLA
                     ATVFLACSDTTAKYLASSLPPIQIAWIRYFVFFLIILPAVMYQGPRRVLRSARPGLQV
                     FRGFGLVTSSILFITGLRYLPVAEATATSFAAPLFITALSIPFLGERVGPRRWAATVV
                     GLVGVLVVVRPGTSAFDPASILPLLSALGWASAVVATRRTSAGDGAVTTLAYSAIVGV
                     AVLTVLVPFVWITPDWHSVALATFIGFAATTGHWLIVLAFRYGDASVLAPFTYTQLVW
                     VTLFGWIWFGAVPDRWTLAGAAVIAASGIYTAHRESVRARERAARGEG"
BASE COUNT          327 a          883 c          830 g          448 t
ORIGIN      
        1 gggcgcgcag gagcacgtgc cgcttcttgc cgaatgagag cttgatgacg ccttcggccg
       61 tgaggtcgct gccccgaagc accgctcgct cgtcggtcac ggcggcgtcg ttcaccctca
      121 agccgccgcc cttgacctgc cggcgcgcct cactcgtcga cggcaccagc ctggcgtact
      181 cggggccgaa ggcagtgagc accccgagcc ccgcgtcaag aaccgccgcc ggcacctcga
      241 cggtcggcag gctctccgcc aacgtcccct gctcgaaggt cttgcgtgcg gtctcggccg
      301 ccgcttcagc cgcctcgcgg ccgtgcagga gggcggtcgc ctccgtcgcg agcaccttct
      361 tggcctcgtt gacctcggca ccgccgaggg cctgcaggcg cccgacctcg ctcatcggca
      421 gggtggtgaa gagcttcagg aagcggccga cgtcggcgtc ctcggtgttg cgccagaact
      481 gccaatagtc gtaggggctt aagaggtccg gattgagcca caccgctccc gcggcggtct
      541 tgcccatctt ggcgcccgac gcggtcgtca gcaacggaca tgtcagcgcg tagagctgcg
      601 gcgtgcccat gcggcggccg aggtcgatgc cgttgacgat gttgccccac tggtcggaac
      661 cgcccatctg caggatgcag ccgtagcggc gcgcgagctc cgagaagtcg taggcctgca
      721 ggatcatgta gttgaattcg atgaaggaca gctcgtgctc gcgctcgagc cggattttca
      781 ccgattccat cgacagcatg cggttgaccg agaagtgccg gccgacgtcg cgcaggaact
      841 cgatgtagtt gaggggcgcg agccattccg cgttgtcggc catgagcgcg tcggtgcggc
      901 cggcgccgaa gcgaaggaag cgcgagaaca cgcccttgat ggcgtccttg ttggcctcga
      961 tctgctcgat cgtgaggagc ttgcggctct cgtcgcgtcc cgacgggtcg ccgacgcgcg
     1021 tggtgccgcc gcccatgagc gtgatcggct taccgcccgt ctcctgcagc cagtgcagca
     1081 tcatgatcga cagaaggtgg ccgacgtgca gcgacggcgc cgtgcagtcg tacccgacgt
     1141 atgcgacgac ctcgccggcc tgcgccttgg cgtcgagccc cgccacgtcc gagcactggt
     1201 gcacgtagcc acgctcgtgc aggacctgca ggaagtcgga tcgcggcccg ctcatcgccg
     1261 tctcgatgct catgttgtcg ctggaaaggg ccgcgtctag cagcttcgcg ccgggatttc
     1321 acgcgggaat atcggcctcc aggcccgcgc ggacgggcat gtcctccccg ccggctccga
     1381 tgctatgggg cgcgcatgtc gtcccacgcc gccgctccga atccgccgca agctgtcgcc
     1441 ctgcctgccg atccggcggc ggccccggtt cggggggcga gcttgccccg gcagcggcca
     1501 gcgctgggca tcggcctcgt ccttgctgcc accgtgttcc tcgcctgctc cgacacgacg
     1561 gcgaagtacc tcgcgagctc gctgccgccg atccagatcg cgtggatccg ctacttcgtg
     1621 ttcttcctca tcatcctgcc cgcggtcatg taccagggtc caaggcgcgt cctgcgatcc
     1681 gcccggccgg ggctgcaggt cttccgaggg tttgggctcg tcacgtcgtc gatcctgttc
     1741 atcacggggc tgcgctacct tccggtggca gaggcgacgg cgacgagctt tgcggcgcca
     1801 ttgttcatca cggcgttgtc gatcccgttc ctcggcgagc gcgtcggccc gcgccgctgg
     1861 gcagcgacgg tcgtcggcct cgtcggcgtg ctcgtcgtgg tgcgccccgg cacgagcgcc
     1921 ttcgatcccg cctcgatcct gccccttctc tccgccctcg gctgggcgag cgccgtggtc
     1981 gcgacgcggc gcaccagcgc gggcgacggc gcggtgacga cccttgccta ttcggcgatc
     2041 gtcggcgtcg cggtcctgac cgtcctcgtt cccttcgttt ggatcacccc ggactggcac
     2101 tccgtcgcgc tcgccacctt catcggcttt gcggccacga ccggacattg gctcatcgtc
     2161 ctcgcgttcc gctacggcga tgcctcggtg ctcgcgccct tcacctatac gcagctcgtc
     2221 tgggtcacgc tgttcggctg gatctggttc ggcgcggtgc ccgaccgctg gacgcttgcg
     2281 ggcgccgcgg taatcgccgc gagcggcatc tacaccgcgc accgggaaag cgtccgtgcc
     2341 cgcgagcgcg cagcccgcgg cgagggttag ccgaggttgt ttacggccaa gctgaaaccg
     2401 tcgtctccgt cgccccgtta tcgctgggag acagggggag gtatgtcatg ccggcaatgg
     2461 gagcgcgttc gcgcctcgta ctgaccaa
//
LOCUS       DASQWN010000624         4221 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_870778, whole genome shotgun sequence.
ACCESSION   DASQWN010000624 DASQWN010000000
VERSION     DASQWN010000624.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 4221)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4221)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4221
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_870778"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..790)
                     /locus_tag="VE686_11695"
     CDS             complement(<1..790)
                     /locus_tag="VE686_11695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014494472.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-keto-5-aminohexanoate cleavage protein"
                     /protein_id="HYY85145.1"
                     /translation="MRPVVIAVAITGSVPRKKDNPAVPVTPAEQVESTQQAFEAGATL
                     VHIHVRNDDESPSSDPERFAAVQEGIRKHCPGMIVQFSTGGRGRDPAARGSSLYLKPD
                     MASLSTGSVNFPTIIYENSAAFVTDLAARMKELAIRPEIEIFDLSHLHGARRLADAGL
                     VDERPHVQFVMGVQNAMPAEEHLVDILHGELMRLFPKATWTAAGIGRNQARVMEWALK
                     RGAEGVRTGLEDNIRVSKDRLASSNAELVQLAAEAVARHGARPAT"
     gene            complement(802..1362)
                     /locus_tag="VE686_11700"
     CDS             complement(802..1362)
                     /locus_tag="VE686_11700"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018495619.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008752 - FMN reductase (NAD(P)H) activity
                     [Evidence IEA];
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0052873 - FMN reductase (NADPH) activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADPH-dependent FMN reductase"
                     /protein_id="HYY85146.1"
                     /translation="MKIVGLSGSLRKGSYNSAALRAAQALAPEGTAIEIAEIGDLPLY
                     NDDVRAAGYPAPVERLRGQIAEADAVLFVTPEYNYSVSGVLKNAIDWASRPPHQPFDG
                     KPVAIMGASGGLFGTARAQYHLRQMLIFLNAFPVNKPEVMIGQAQTKFDEAGNLTDET
                     TREFIRKLLVSLVAWTERLKASAPKS"
     gene            complement(1379..1636)
                     /locus_tag="VE686_11705"
     CDS             complement(1379..1636)
                     /locus_tag="VE686_11705"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY85147.1"
                     /translation="MIDDLPEIREQLTSHWQAAALDLVKRGFRPEAVFETLLTVGLAG
                     HVEIHGKESTADKLVAVAGKLSEQVRNEIAAAEEAKGSTKN"
     gene            1704..2795
                     /locus_tag="VE686_11710"
     CDS             1704..2795
                     /locus_tag="VE686_11710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009763591.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HYY85148.1"
                     /translation="MAWSPQQDSALKAVAEWLRRGEPQVFRLFGYAGTGKTTLARHIA
                     EGVEGEVAFGAYTGKAALVLRSKGCSEASTIHSMIYRSRESDEGGPSFVLNRQSAAAK
                     ADLIIIDECSMVDEELGRDLLSFGRPVLVLGDPAQLPPVKGGGFFTEAEPDVMLTEVH
                     RQAQDNPIISMSMAIREGRRLDRGPYGESRVLSRRDIDAEAVMGADQILVGLNRTRRL
                     YNGRMRQLKGFRDPLPAAGEKLVCLRNDKTKGLLNGGTWTIQALRAARDDFIRMDVVP
                     EEEGRRRPVEVSVLRAFFEGDETAIPHILRRESDEFTYGYALTVHKAQGSQWDDVVLF
                     DESFAFREHRARWLYTGLTRAAERVTVVV"
     gene            2927..4039
                     /locus_tag="VE686_11715"
     CDS             2927..4039
                     /locus_tag="VE686_11715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004446267.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HYY85149.1"
                     /translation="MTTSLLRRDFLKASAALVGAAAGGFSCVEVASAAPIEVPTVDRL
                     SMRVLIDQAHDQFLRGSTVNGVVHEGPGAGRSPDARNVLHNQWGLSLFLESQREQEQR
                     TVMLDFGYTAEALANNIGLLKVDPSKIQALIVSHGHIDHYGGLVGFLEKYRAVLPADI
                     KVYDGGEDNFCHRLRGAELAQLGEGGTLSRRDIESYKVATVLCETPTVIAGHAFTTGK
                     IKRNSMERVLPNGFVDYTKEGASCDYGHYTAAELQGKFVPDEHVHEHATCFNIRGKGL
                     VVISSCGHVGIVNSVRQAQEVSGVQKVHAIVGGFHLGPAPADYLKQVIAEIRKLEPDV
                     LVPMHCSGLNFLLEARAQMPNNVIQTSTGSRLIFSA"
BASE COUNT          664 a         1424 c         1429 g          704 t
ORIGIN      
        1 gggttgcggg gcgggcgccg tggcgggcga cggcctcggc cgccagctgc acgagctcgg
       61 cgttcgagct ggcgagccgg tccttcgaga cgcggatgtt atcctcaagg cccgtgcgca
      121 cgccctcggc gccgcgcttg agcgcccatt ccatgacgcg ggcctggttg cggccgatgc
      181 cggcggcggt ccaggtcgcc ttggggaaca ggcgcatgag ctccccatgc aggatatcga
      241 cgaggtgctc ctcggccggc atggcgttct gcacccccat gacgaactgc acgtggggcc
      301 gctcgtccac gagccccgcg tcggcgaggc gccgcgcccc atgcaggtgc gagaggtcga
      361 agatctcgat ctcggggcgg atcgccaact ccttcatgcg ggccgcgagg tccgtgacga
      421 aggcggcgga gttctcgtag atgatggtcg ggaagttcac cgaacctgtc gagagcgacg
      481 ccatgtcggg cttgagatag agcgagctgc cccgcgccgc cgggtcccgg ccgcgcccgc
      541 ccgtcgagaa ttgcacgatc atcccggggc agtgcttgcg gataccctcc tgcacggcgg
      601 cgaagcgctc cggatcagac gacgggctct cgtcgtcgtt gcgcacatgg atgtgcacga
      661 gcgtcgcccc ggcctcgaag gcttgctgcg tcgactcgac ctgctcggcc ggggtcaccg
      721 ggaccgcggg gttgtccttc ttgcgcggca ccgagccggt gatggcgacg gcgatgacga
      781 cgggtcgcat ggcgtttgtc ctcagctctt cggagccgac gccttgaggc gctcggtcca
      841 ggcgacgagc gatacgagaa gcttgcggat gaactcgcgc gtcgtctcgt ccgtcaggtt
      901 gccggcttcg tcgaacttgg tctgcgcctg cccgatcatc acctccggct tgttgaccgg
      961 gaaggcattg aggaagatca gcatctgccg caggtggtac tgcgcccggg cggtgccgaa
     1021 caatccgccg ctcgcgccca tgatggccac gggcttgccg tcgaagggct ggtgcggcgg
     1081 ccgcgacgcc cagtcgatgg cgttcttgag cacgcccgag acggagtagt tgtactcagg
     1141 cgtgacgaac aggacggcgt ccgcctccgc aatctgcccg cgcaggcgct ccaccggcgc
     1201 cggatagccg gccgcacgaa cgtcgtcatt gtagagcggc aggtcgccga tctcggcgat
     1261 ctcgatcgcc gtgccctcgg gcgcgagcgc ctgcgcggcg cgcagggcgg ccgagttgta
     1321 cgatcctttg cgcaggctgc ccgataggcc gacgatcttc atgggcggct gtgtcctctc
     1381 agttcttggt cgagcccttg gcctcttcgg cggcggcgat ttcgttgcga acctgctcgg
     1441 agagcttgcc ggcgaccgcg acgagcttgt cggccgtcga ctccttgccg tggatttcca
     1501 cgtggccggc gaggcccacg gtcagcaacg tctcaaacac cgcttcgggc cggaatccgc
     1561 gcttcacgag gtcgagcgcg gccgcctgcc agtgactggt cagctgctcg cggatttccg
     1621 gaaggtcgtc gatcatccgt gagcgtctag cgcatccggg cagggctgtc gcctgcgcag
     1681 gtcgcatcag ctaagagcga gcgatggctt ggtcgccgca gcaggacagc gccttgaagg
     1741 ccgtcgccga gtggctccgc cgcggcgagc cgcaggtgtt ccgcctattc ggctacgccg
     1801 gtaccggcaa gaccaccctc gcccggcaca tcgccgaggg cgtcgagggc gaggtcgcct
     1861 tcggcgccta cacgggcaag gccgcgctgg tgctgcgctc gaagggctgc agcgaggcct
     1921 cgacgatcca cagcatgatc taccgctcgc gcgagtcgga cgagggcggg ccgtccttcg
     1981 tgctcaaccg gcagagcgcg gccgccaagg ccgacctcat catcatcgac gagtgctcga
     2041 tggtggacga ggagctcggg cgcgacctgc tgtcgttcgg ccggcccgtg ctggtgctcg
     2101 gcgatccggc ccagctgccg cccgtcaagg gcggcggctt cttcacggag gccgagcccg
     2161 acgtcatgct gaccgaggtg caccgccagg cgcaggacaa ccccatcatc agcatgtcta
     2221 tggcaatccg cgaaggccgc cgcctcgacc gcgggcccta cggcgaaagc cgcgtcctgt
     2281 cccggcgcga catcgacgcc gaagctgtga tgggagccga ccagatcctt gtcggcctga
     2341 accgcacgcg ccgcctctac aacggccgca tgcgccagct caaaggcttc cgcgaccctc
     2401 taccggcggc cggcgagaag ctcgtgtgcc tgcgcaacga caagaccaag ggcctcctca
     2461 acggcggaac ctggaccatc caggccctgc gcgccgcgcg cgacgatttc atccgcatgg
     2521 acgtggtgcc cgaggaggaa ggccgtcgcc gccctgtcga ggtctcggtg ctgcgcgcct
     2581 tcttcgaggg cgacgagacc gcgatcccgc acatcctgcg gcgcgagtcg gacgagttca
     2641 cctacggcta cgccctgacg gtccacaagg cgcaaggctc gcagtgggac gacgtcgtcc
     2701 tcttcgacga aagcttcgcg ttccgcgagc accgcgcccg ctggctctac accggcctca
     2761 cgcgggcggc ggagcgcgtc accgtcgtgg tctgacggcg cgcgatccct ccccgcgagg
     2821 gtcaaaagac cgactaccgc gcacacttct gctatcgctg cgcctgaaac gcgcgtaggt
     2881 tgaagcttct cgtggttggc gcgtgtgcgc tcctcggagg tcctcgatga cgacttctct
     2941 gctccgtcgc gatttcctca aagcatcggc ggctctggtc ggcgctgccg ccggcggctt
     3001 cagctgcgtg gaggtcgcct cggcggcgcc gatcgaggtt ccgaccgtcg acaggctttc
     3061 catgcgtgtc ctgatagacc aggcgcacga ccagtttctg cgcgggagca cggtcaacgg
     3121 cgtggtccac gagggccccg gcgccggacg cagcccggac gctcgcaacg ttctgcacaa
     3181 ccaatgggga ctctcgcttt tcctcgagtc ccaaagggag caggaacagc gcaccgtcat
     3241 gctcgacttc ggctacaccg ccgaggcgct cgcgaacaac atcgggctcc tgaaggtcga
     3301 cccgagcaag atccaggccc tgatcgtcag ccacggtcat atcgaccatt acggcggcct
     3361 tgtcggattt ctcgagaagt atcgcgctgt cctgccggcc gatatcaagg tctatgacgg
     3421 cggagaggat aacttctgcc atcggctgcg aggagccgag ttggcgcagc tcggcgaggg
     3481 cggcacgctc agccgcagag acatcgaatc ctacaaggtg gccacggtgc tgtgcgaaac
     3541 gccgacggtc atcgcgggcc atgccttcac gacggggaag atcaagcgca acagcatgga
     3601 gcgcgtgctg cccaacggct tcgtcgacta cacgaaggag ggcgcgagct gcgactacgg
     3661 ccactatacc gccgccgagc tacaggggaa attcgtgccg gacgagcatg tccatgagca
     3721 cgccacctgc ttcaacatcc gtggcaaggg tctcgtggtg atcagctcgt gtggccacgt
     3781 cggcatcgtc aattccgtgc ggcaggcgca ggaagtgtcg ggcgtccaga aggtgcacgc
     3841 catcgtcgga ggcttccatc tcggcccggc gccggccgac tacctcaagc aggtgatcgc
     3901 ggagatcagg aagctcgaac ccgacgtgct cgtcccgatg cattgcagcg ggctcaattt
     3961 cctgctcgag gcgcgggccc agatgccgaa caacgtgatc cagacttcga ccggcagccg
     4021 gctcatcttc agtgcctagg ccctttcggg tcggtcatgt ccatggtggg ccgcgcatga
     4081 cagcgagggg acgagtgctt gccccgctgt tgcttctcag cgtggccgcg atcgagacct
     4141 cgtcgtctgc tgctgcggcc gaccgctccg ccgccgagtt gatggacgtg gtcatgtgga
     4201 accgggagcc gatcggcggc c
//
LOCUS       DASQWN010000625         4239 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_474705, whole genome shotgun sequence.
ACCESSION   DASQWN010000625 DASQWN010000000
VERSION     DASQWN010000625.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 4239)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4239)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4239
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_474705"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..436)
                     /locus_tag="VE686_11720"
     CDS             complement(<1..436)
                     /locus_tag="VE686_11720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012319893.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0047429 - nucleoside triphosphate
                     diphosphatase activity [Evidence IEA];
                     GO_process: GO:0009143 - nucleoside triphosphate catabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="non-canonical purine NTP pyrophosphatase"
                     /protein_id="HYY85150.1"
                     /translation="MARQLSGKVIVATHNPGKLREMAELLAPYGIETVSAGELGLAPP
                     AETGHMFAENAAIKAHAAAHGGGLPALADDSGICIDALDGAPGLFSADWAQGKDFGPA
                     MARVERELRRRNALAPGERRAHFVSALVIAWPDGHEELFEGRV"
     gene            complement(452..1168)
                     /gene="rph"
                     /locus_tag="VE686_11725"
     CDS             complement(452..1168)
                     /gene="rph"
                     /locus_tag="VE686_11725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012452405.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004549 - tRNA-specific ribonuclease
                     activity [Evidence IEA];
                     GO_process: GO:0008033 - tRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease PH"
                     /protein_id="HYY85151.1"
                     /translation="MRPSKRAPDELRPVTLQRGVARYAEGSCLVSFGETKVLCAASLE
                     ERGPPWLRGSGKGWVTAEYAMLPRATHERTRREVTSGKPSGRTQEIQRLIGRALRAVV
                     NLPAIGERQIVVDCDVIQADGGTRTASITGAWVALHDCFQWMQSRSIISVNPLRDHVA
                     AVSCGIHQGAPVLDLDYAEDSAAETDANFVITGSGGLVEVQGTAEGKPFSEEELLELL
                     RLAKAGVGQLVTLQKQAVAS"
     gene            1306..2385
                     /gene="hrcA"
                     /locus_tag="VE686_11730"
     CDS             1306..2385
                     /gene="hrcA"
                     /locus_tag="VE686_11730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012605545.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_process: GO:0009408 - response to heat [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="heat-inducible transcriptional repressor HrcA"
                     /protein_id="HYY85152.1"
                     /translation="MNRPNPSQARALAELNERSREIFKQIVESYLATGDPVGSRNISR
                     IIPMTLSPASVRNVMADLEHAGLIYAPHTSAGRLPTELGLRFFVDALLEIGDLPAEER
                     ARVEAQMRAAATGHTLETALAEASALLSGVSRGAGVVVTTKSNARLRHVEFVRLDPAR
                     ALVVLVSEDGSVENRLVDLPPGLPAAALTEAANFLNARIQGRTLSELATEIGARRAEM
                     ERELDELTARLVEAGLATTVGSADERHLIVRGQANLLEDLRAGDDLERIRLLFADLET
                     QKDVIELLTRAEGGEGVRIFIGSENKLFSLSGSSLIAAPFRDGAQKIVGVVGVIGPTR
                     LNYARIVPMVDYTAKVVSRILNRGG"
     gene            2470..3084
                     /locus_tag="VE686_11735"
     CDS             2470..3084
                     /locus_tag="VE686_11735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011942647.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease H-like domain-containing protein"
                     /protein_id="HYY85153.1"
                     /translation="MTIRLHRGDLPEGYRPGPAIAVDTETLGLKPHRDRLCVVQLSAG
                     DGTADVVQILKDARPPANLMAVLGDPAVLKIFHYARFDVGVLKHSLGVVPQPLYCTKI
                     ASKLIRTYTDRHGLKDLVREVLGIEISKQQQSSDWGADPLSHAQVEYAASDVLHLHAL
                     RERLDAMLAREGRSGLARECFAFLPVRAELDLAGFEDTDVFAHS"
     gene            3288..3965
                     /gene="lptC"
                     /locus_tag="VE686_11740"
     CDS             3288..3965
                     /gene="lptC"
                     /locus_tag="VE686_11740"
                     /inference="COORDINATES: protein motif:HMM:NF018537.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0015221 - lipopolysaccharide transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0015920 - lipopolysaccharide transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LPS export ABC transporter periplasmic protein
                     LptC"
                     /protein_id="HYY85154.1"
                     /translation="MRFFKIAIPTGAVLAIGAVAAIAFLDPFGRLSGLSVGPIRISGT
                     QLTMENPRLTGFRKDNRGYEITASAATQDVRKPHVVELTDLRGRLVMDESGGLARLAS
                     DFGVFDTTKEAIDLRQNIRVQTDAGQEVLLKSAAVDFKAGTVRSREPVQVRFAGGSVD
                     ADQLDVNDHGKVLTFTGRVRTVFEPAAERPGLDKQAQAELPAPVPVAENTPPPSGATP
                     PTTSLRR"
     gene            4034..>4239
                     /locus_tag="VE686_11745"
     CDS             4034..>4239
                     /locus_tag="VE686_11745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018261166.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="organic solvent tolerance protein OstA"
                     /protein_id="HYY85155.1"
                     /translation="MAQQSARAAQPPPQAAAPAKPAVSEKAGVLGGFGSGSKEPIKID
                     SDKLDVYDKEGRAVFSGKVVAVQG"
BASE COUNT          657 a         1521 c         1432 g          629 t
ORIGIN      
        1 acacccggcc ctcgaagagc tcctcgtgcc cgtccggcca ggcgatcacc agggcagaga
       61 cgaaatgcgc ccgccgctca cctggcgcga gcgcgttgcg gcgccgcagt tcccgttcca
      121 cccgcgccat ggcgggcccg aagtccttgc cctgggccca gtcggccgag aacaggcccg
      181 gtgccccatc gagcgcgtcg atacagatcc ccgagtcgtc cgccagcgcc gggagaccgc
      241 cgccgtgtgc ggcggcgtgc gccttgatgg cggcattctc ggcaaacatg tgccccgtct
      301 cggccggggg cgcgagaccg agttcgccgg cggaaacggt ctcgatgccg tatggcgcca
      361 gcagctccgc catctcgcgg agcttgccgg ggttgtgggt ggcgacgatc accttgccgc
      421 tgagctggcg cgccatgtcg cgggagcgcc tttaagaggc gaccgcctgc ttctgcaggg
      481 tcacgagctg accgacgccg gccttggcga gccgcaagag ctcgaggagc tcctcctccg
      541 agaaaggctt gccctcggcc gtgccctgca cctcaacgag gccgcccgac ccggtgatga
      601 cgaaattggc gtccgtctcg gcggctgaat cctcggcgta atcgagatcg agcacgggcg
      661 cgccctgatg gatgccgcac gacacggccg ctacgtggtc gcgcaatggg ttgacggaga
      721 tgatcgaccg cgactgcatc cactggaagc aatcgtgcag cgccacccag gcaccggtga
      781 tcgacgcggt gcgcgtgcct ccgtccgcct ggatgacgtc gcagtcgacg acgatctggc
      841 gctcgccgat agcgggaagg ttcaccacgg cgcgcaaggc gcggccgatc aggcgctgga
      901 tctcctgcgt gcggcccgac ggcttgccgc tcgtcacctc gcggcgcgtg cgctcgtgcg
      961 tcgctcgcgg cagcatggcg tattcggccg tgacccagcc cttgccgctg ccgcgcagcc
     1021 acggcggccc gcgctcctcg agggaggccg cgcacaagac cttggtctcg ccgaacgaga
     1081 cgaggcagga cccttccgcg tagcgggcga ccccgcgctg cagggtcacg gggcgcagtt
     1141 cgtccggggc gcgcttcgac ggccgcatgg gcaagggtct ccgaggaagg gcgggtcata
     1201 gaacgcggga cccaggcccg caaggcgccg cgcttgcgcc ctgtcggcgt gacccccatc
     1261 atgaaaccca ggcaggagcc tcccgcctcg gtgacccacg tctcgatgaa ccggcccaat
     1321 ccgtcccaag cccgcgcact tgccgagctg aacgagcgct cgcgcgagat cttcaagcaa
     1381 atcgtggaga gctatctcgc gaccggcgac ccggtcgggt cgcgcaacat ctcgcgcatc
     1441 atcccgatga cgctctcgcc cgcatccgtg cgcaacgtca tggccgatct cgagcacgcc
     1501 gggctgatct acgcgccgca taccagcgcg gggcgcctgc cgaccgagct cgggctgcgg
     1561 ttcttcgtcg acgcgctcct cgagatcggc gacctccccg ccgaagagcg cgcgcgcgtc
     1621 gaggcgcaga tgcgcgcggc cgccacggga cataccctcg agacggcgct cgccgaggcc
     1681 tcggcgctgc tgtcgggcgt gtcccggggc gcgggcgtcg tggtgacgac gaagtcgaat
     1741 gcgcggcttc gccacgtcga gttcgtcagg ctcgatcccg cgcgcgccct cgtcgtgctc
     1801 gtgtcggagg acggctcggt cgagaaccgc cttgtcgatc ttccgcccgg cctgccggca
     1861 gcggcactca cggaggccgc aaacttcctc aacgcgcgca tccagggcag gacacttagc
     1921 gagctcgcga ccgagatcgg agcgcgccgt gccgaaatgg agcgcgagct cgacgagctc
     1981 acggcccggc tcgtagaggc ggggctcgca acgacggtcg gctcggccga cgaacgtcac
     2041 ctcatcgtgc gcggccaggc gaacctgctc gaggacctgc gcgccggaga cgatctcgaa
     2101 cgcatccggc tcctgttcgc cgatctcgaa actcagaagg acgtcatcga gctcctcacc
     2161 cgcgccgagg gcggcgaagg cgtgcgcatc ttcatcggct cggagaacaa gcttttctcc
     2221 ctctcgggat cgtccctgat cgccgcgcct ttccgcgacg gggcgcagaa gatcgtgggc
     2281 gtcgtcggcg tgatcgggcc cacccggctg aactacgcgc gcatcgtccc catggtggac
     2341 tacaccgcca aggtcgtgag ccggatcctc aatcgcggcg gctagcgcgc gagggaagcc
     2401 gtttgctcag gccggcgcac gggtggtaca cggcccggct cggggcgggc ggggaaacgc
     2461 ggggcagcca tgacaatccg cctccatcgc ggcgacctac cggagggcta tcggcccggg
     2521 ccggccatcg ccgtcgatac cgagacgctc ggcctcaagc cccatcggga tcgcctctgc
     2581 gtcgtgcagc tctcggccgg cgacggaacg gccgacgtgg tgcagatcct caaggacgca
     2641 cggccgcccg cgaacctcat ggccgtgctt ggcgatcctg cggtgctgaa gatcttccac
     2701 tacgcgcgct tcgacgtcgg cgtgctgaag cacagcttag gcgtcgtccc gcagcctctg
     2761 tactgcacca agatcgcctc gaagctcatc cggacctaca ccgaccggca cggcctcaag
     2821 gacctcgtcc gcgaggtcct tggcatcgag atctcgaagc agcagcaatc ctccgactgg
     2881 ggggccgacc cgctgagcca tgcccaggtc gagtacgcgg cgtccgacgt cctccacctg
     2941 catgccttgc gcgagcgcct cgacgcgatg ctggcgcggg agggccgcag cggccttgcc
     3001 cgggagtgct tcgcgttcct gcccgtgcgg gccgagctcg atctcgccgg attcgaggac
     3061 acggacgtct tcgcgcatag ttgaccggga cttaacgctt gccggccacc atggggggcg
     3121 tcacaacttc gccacgccgc tccgtcagca gtcggccacc cgagcgaaat cgggcaaggg
     3181 gttttcgcag catgtctcag aggcgcctcc ctgaggaggg aacggacgtg gccgtatccg
     3241 gcccgcgttc gcgcgcctat gcgagggcca ggcgccattc ccggaccgtg cggttcttca
     3301 agattgccat tcccactgga gcggtgctcg ccatcggcgc cgtcgcggcg atcgcgtttc
     3361 tggacccgtt cgggcgcttg agcgggctct cggtcgggcc gatccggatt tccggcacgc
     3421 agctcaccat ggaaaacccg cgcctcacgg gctttcgcaa ggacaaccgc ggctacgaga
     3481 tcaccgcgtc ggccgcgacg caggacgtcc gcaagccgca cgtggtcgag ctgacggacc
     3541 tgcgcggccg gctcgtcatg gacgagagcg gcggtctcgc ccgtttggcc tccgacttcg
     3601 gcgtcttcga caccacgaag gaagccatcg acctgcggca gaacatcagg gtccaaaccg
     3661 acgccggcca ggaagtgctg ctaaagtcgg cggcggtcga cttcaaggcc ggaacggtgc
     3721 gctcccggga gcccgttcag gtcagatttg cgggcgggtc ggtcgatgcc gaccagctcg
     3781 acgtcaacga ccacggcaag gtgctgacct tcacgggccg cgtccgcacc gtgttcgagc
     3841 cggccgccga gcggcccggg ctcgacaagc aggcccaagc cgagctgccc gcccctgtgc
     3901 cggtcgccga gaacacgccg ccgccaagcg gagccacgcc gccaaccacg agtcttcgtc
     3961 gatgatgcgt ttgcccctcc accgttccgc gacggcgtcc gtcgtggcgc tcgggctcct
     4021 ggccgttccg gccatggcgc agcaatccgc gcgcgccgca cagccgccgc cgcaggccgc
     4081 ggcgccggcc aagcctgccg tatccgagaa ggccggcgtc ctcggcggct tcggctcggg
     4141 cagcaaggag ccgattaaga tcgattccga caagctcgac gtctacgaca aggagggccg
     4201 ggcggtgttt tccggcaagg tcgtcgccgt ccagggcga
//
LOCUS       DASQWN010000626         2513 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_558090, whole genome shotgun sequence.
ACCESSION   DASQWN010000626 DASQWN010000000
VERSION     DASQWN010000626.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2513)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2513)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2513
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_558090"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..495)
                     /locus_tag="VE686_11750"
     CDS             complement(<1..495)
                     /locus_tag="VE686_11750"
                     /inference="COORDINATES: protein motif:HMM:NF012927.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxidoreductase"
                     /protein_id="HYY85156.1"
                     /translation="MTSALFSPIRLAELELPNRVVISPMCQYSARDGCMTDWHLTHLG
                     SLSNSGASLLVFEATAVERHGRISHGDLGLYDDDCEAALARVVAHCRRIGSTKLGIQI
                     GHAGRKASAQRPWEGGRALSAAEDPWQTIAPSPIALAPGWPTPHEMTLQDIARVREAH
                     AEAAG"
     gene            complement(577..1281)
                     /locus_tag="VE686_11755"
     CDS             complement(577..1281)
                     /locus_tag="VE686_11755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019197416.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY85157.1"
                     /translation="MIPWVLLDTAEMPDGGGDLRLMQRGAEFSIMSGPVELMNSRLSG
                     SEEALAAMAAARLQGCSRPEVLIGGLGMGFTLRAALAALGPEAQVTVAELVPAVIAWA
                     RGPLAPVFGDSLADPRVSVVEGDVAGLIAQARRAYDTILLDFDNGPEVLTRKANDRLY
                     DVAGLGEARRALRPGGILAVWSSGPDRSFTQRLRRTGFSVDEVSVRASRSRRGARHVI
                     WMATPTDARPTGTGRS"
     gene            complement(1327..1524)
                     /locus_tag="VE686_11760"
     CDS             complement(1327..1524)
                     /locus_tag="VE686_11760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018262473.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY85158.1"
                     /translation="MSSSSNPTHPYTVEVFPTEKPAGHFSWTIRKHGKLVERSDRPIH
                     SERSAHEKAQAALERQFHGER"
     gene            complement(1572..2117)
                     /locus_tag="VE686_11765"
     CDS             complement(1572..2117)
                     /locus_tag="VE686_11765"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY85159.1"
                     /translation="MNARPASLSAAALAVCVTILPAGTARPQPVAPPSAETTTPASVA
                     RQFALSYLDFWSAPNPSTLVATPVFYAPRVVFHGRTMTSDALFAEKLRFVARWPDRSY
                     TPRLETVRTSCARDLCRVRTAFDFSATNADAARHSEGQGTLELAIKFVGGRPYIVEEN
                     SRVTRRGSAGNDARPSPPARG"
     gene            complement(2187..>2513)
                     /locus_tag="VE686_11770"
     CDS             complement(2187..>2513)
                     /locus_tag="VE686_11770"
                     /inference="COORDINATES: protein motif:HMM:NF019998.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0043190 - ATP-binding cassette (ABC)
                     transporter complex [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TOBE domain-containing protein"
                     /protein_id="HYY85160.1"
                     /translation="VVGSGSDRAFRVADGVMLPIPPGAEVPPGARLVFRPQDARIDPG
                     AEGACLSGTIANREFLGSAVRYGVRVGPAELTVDVPFHAGDRLHEVGAPATVRVAPRS
                     LLWLAG"
BASE COUNT          370 a          869 c          931 g          343 t
ORIGIN      
        1 ccccgccgct tcggcatggg cctcgcgcac gcgcgcgatg tcttgcaacg tcatctcgtg
       61 cggggtcggc cagcccggcg cgagggcgat cggcgagggg gcgatcgtct gccacgggtc
      121 ctccgccgcc gagagcgccc ggccaccttc ccagggccgc tgcgcagagg ccttccggcc
      181 cgcgtgccca atctggatgc cgagcttggt ggagccgatc cggcggcaat gggcgacgac
      241 ccgagcgagg gccgcctcgc aatcgtcatc gtaaagaccg aggtcgccgt gcgagatgcg
      301 gccgtgccgt tcgacggccg tcgcctcgaa gacgaggagg ctcgcgcccg agttggagag
      361 gctcccgagg tgggtcaggt gccagtccgt catgcacccg tcgcgggcgc tgtactggca
      421 catcggcgag atcacgacac ggttcggcag ctcgagctcg gcaagccgga tggggctgaa
      481 cagggcgctg gtcatgcggg gcaggcctcc tggcatcgcc gacaacgcgc taggcgcgcg
      541 cgagggttcc cggtttcgcc ggccgaccag gcgcggtcaa ctgcgcccgg tgcctgtcgg
      601 ccgtgcgtcg gtcggggtcg ccatccagat cacgtgccgg gcgccgcggc ggctccggct
      661 cgcgcgcacc gacacctcgt cgaccgagaa tccggtccgc cgcaggcgct gtgtgaagct
      721 gcgatccggt ccggaggacc atacggcaag gatcccgccg gggcgcagcg cccggcgggc
      781 ctcgccgagg ccggcgacgt cgtagaggcg gtcgttggcc ttgcgcgtca gcacctcggg
      841 cccgttgtcg aagtcaagca ggatggtgtc gtaggcccga cgagcctgcg cgatcaggcc
      901 ggcgacatca ccttcgacga cgctgacccg cggatccgcc aggctatccc cgaagacggg
      961 tgccagcggg ccacgcgccc aggcgatcac ggccggaaca agctccgcga cggtcacctg
     1021 cgcttccggc ccgagcgccg cgagcgctgc ccggagcgtg aagcccatcc cgagcccacc
     1081 gatcagcacc tcaggccgcg agcagccctg gagccttgcc gccgccatgg cggcgagcgc
     1141 ctcctcggat ccgctgagcc ggctgttcat cagctcgacg gggccggaca tgatcgagaa
     1201 ctcggctccg cgctgcatca ggcgcaggtc gccgccaccg tcgggcatct cggccgtgtc
     1261 gagaaggacc cacgggatca tgcggtagcg aacggccgca gcgcacccgc gtgccggttc
     1321 ggccccttag cgttcgccgt ggaactgccg ctcgagcgcg gcttgcgcct tctcgtgcgc
     1381 tgagcgctcc gagtggatcg gccggtcgga ccgctcgacg agcttgccgt gcttgcggat
     1441 cgtccaggag aaatggcccg ccggcttctc ggtcgggaag acctcgacgg tgtagggatg
     1501 agtggggttg ctgctgctgc tcatgcggac gatatagggc cgaatggcgc cgaccgccac
     1561 tggggcgtgc gtcagccccg cgcgggcggc gacgggcggg cgtcgttgcc cgccgagccc
     1621 cggcgcgtca cgcggctgtt ttcctcgacg atataggggc gtccgcctac gaacttgatc
     1681 gcgagctcga gcgtgccctg cccttcggag tggcgcgctg catcggcgtt cgtggccgag
     1741 aagtcgaagg cggtgcggac cctgcaaagg tcgcgtgcgc agctcgtccg cacggtctcg
     1801 aggcgcggcg tgtagctgcg gtcgggccac cgtgccacga accggagctt ctcggcgaag
     1861 agggcatcgg aggtcatggt ccgtccatgg aagacgacgc gcggtgcata gaacacggga
     1921 gtcgcgacga gcgtggaggg gttcggagcg gaccagaagt cgagatagct cagcgcgaac
     1981 tgccgcgcga cgctcgcggg cgtggtcgtc tcagccgagg gcggcgcgac gggctgggga
     2041 cgggccgtgc cagccgggag gatggtgacg cagacggcga gagcggctgc cgagagcgac
     2101 gcgggtcgtg cgttcatcga atgccccaac gtcagtcagt ccgacaacgg ccggcgcaag
     2161 cttccggttc accttggccc cagggatcag ccggcgagcc agagaagcga gcgcggcgcg
     2221 accctcaccg tcgcgggcgc gccgacctcg tgcagccggt cgccggcatg gaagggcacg
     2281 tcgacggtca gctccgccgg cccgacgcgg acgccatagc gcacagccga cccgaggaac
     2341 tcgcggttcg cgatcgtccc cgagagacag gcaccctcgg caccgggatc gatgcgggcg
     2401 tcctgcggcc ggaagacgag ccttgctccc ggcgggacct cggcgcccgg cgggatggga
     2461 agcatcacgc cgtcggctac gcggaaggcc cggtcgctcc ctgagccgac cac
//
LOCUS       DASQWN010000627         3566 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_871955, whole genome shotgun sequence.
ACCESSION   DASQWN010000627 DASQWN010000000
VERSION     DASQWN010000627.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 3566)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3566)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3566
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_871955"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1180
                     /gene="ptsP"
                     /locus_tag="VE686_11775"
     CDS             <1..1180
                     /gene="ptsP"
                     /locus_tag="VE686_11775"
                     /EC_number="2.7.3.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003599951.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008965 - phosphoenolpyruvate-protein
                     phosphotransferase activity [Evidence IEA];
                     GO_process: GO:0006808 - regulation of nitrogen
                     utilization [Evidence IEA];
                     GO_process: GO:0009401 - phosphoenolpyruvate-dependent
                     sugar phosphotransferase system [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="phosphoenolpyruvate--protein phosphotransferase"
                     /protein_id="HYY85161.1"
                     /translation="PTSHIAIVARALGIPAVSEIENATAVVEPGDAIIVDGMAGEVQI
                     RPTSDIETAYGEKARLRARRQEQYRRVRDVPAVTKDGVAIELQLNAGLLVDLPHLAET
                     GAAGIGLFRTELQFMIAERMPSGAEQQALYKAVLEAVGDAPVTFRTLDIGGDKVLPYM
                     QAMEEQNPALGWRAIRIGLDRPGLLRSQLRALLRAAAGRPLKIMFPMVATCDEFERAK
                     TIVHREKAYLARHKHPLPSELKLGVMVEVPSLLFQLDDIARTADFLSVGSNDLMQFLF
                     AADRENRLVANRFDPLNSASLRALKLVAERSEAAGCPVTVCGEIGGRPLEAMALIGLG
                     FRQLSMSPASIGPVKAMILDVDAGEVTSLVERELRGAGTRDSLRPALAAYAESRGIAA
                     "
     gene            1194..2267
                     /gene="prfA"
                     /locus_tag="VE686_11780"
     CDS             1194..2267
                     /gene="prfA"
                     /locus_tag="VE686_11780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019199554.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016149 - translation release factor
                     activity, codon specific [Evidence IEA];
                     GO_process: GO:0006415 - translational termination
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor 1"
                     /protein_id="HYY85162.1"
                     /translation="MTLAPPADRLDAILARHDIITATLAAAPTSDTFVTLSRELSELD
                     PVVEAIRAYRAAEQTVSELDALARDPEMRALAEEERPGALEALETAAQNLRLLLLPKD
                     EADEKSAILEIRAGTGGDEAALFAGDLFRMYARYAELKGWRVEIISESAGTAGGYKEI
                     VAEIKGRGVFARLKFESGVHRVQRVPDTETQGRIHTSAATVAVLPEAEAVDIAVNDAD
                     LKIETMRAQGAGGQHVNKTESAIRVTHLPSGIVVFVQEERSQHKNRARAMTLLRSRLY
                     DAERTRKDAARAADRKAQVGSGDRSERIRTYNFPQGRITDHRINLTLYKLEEVLAGGA
                     LDEVIDALVTEHQAAQLAAEGVA"
     gene            2264..3172
                     /gene="prmC"
                     /locus_tag="VE686_11785"
     CDS             2264..3172
                     /gene="prmC"
                     /locus_tag="VE686_11785"
                     /EC_number="2.1.1.297"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012452827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008757 - S-adenosylmethionine-dependent
                     methyltransferase activity [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA];
                     GO_process: GO:0018364 - peptidyl-glutamine methylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor N(5)-glutamine
                     methyltransferase"
                     /protein_id="HYY85163.1"
                     /translation="MTSPARGGSRLQLGAATTRQDALGAVRRALEAAGIETAALDARV
                     LLAYGLGIDPVALAAYPDTGLGEDGARRLVAAVARRLAREPVARIVGEREFWGLPFAL
                     SPETLVPRPESETVVETALRHRPERTRRVLDLGTGSGCLLVALLHEIAGATGIGVDRS
                     PAALATARSNAARNGVADRASFLAGDWGAALDERFDLIVANPPYIASGVIQGLEPEVR
                     AHDPLLALDGGADGLSAYRAILDQAAGLLAAAGVVAVEIGFDQGATVPGLGRGAGLEV
                     LEVARDLGGQPRVVALKRPSFPAMAP"
BASE COUNT          551 a         1302 c         1223 g          490 t
ORIGIN      
        1 gccgacgagc cacatcgcca tcgtggcgcg cgcgctcggc atcccggccg tcagcgagat
       61 cgagaacgcc accgccgtcg tcgagcccgg cgacgccatc atcgtcgacg gcatggccgg
      121 cgaggtgcag atccggccga cctccgacat cgagaccgcc tacggcgaga aggcccgcct
      181 gcgcgcccgc cggcaggagc agtaccgccg ggtgcgcgac gtcccggcgg tgacgaagga
      241 cggagtggcc atcgagctgc agctcaatgc cggcctcctc gtcgacctgc cgcacctcgc
      301 cgagaccggg gcggcgggga tcgggctctt ccgcaccgag ctgcagttca tgatcgccga
      361 gcgcatgccg tccggagccg agcagcaggc gctctacaag gccgtgctcg aggccgtcgg
      421 cgacgccccc gtcacgttcc ggacactcga catcggcggc gacaaggtgc tgccctacat
      481 gcaggcgatg gaggagcaga acccggcgct cggctggcgc gccatccgga tcggcctcga
      541 ccggccgggc ctgctgcgct cccagctgcg ggcgctcctg cgcgctgcgg ccgggcggcc
      601 gctcaagatc atgttcccca tggtggcgac ctgcgacgag ttcgagcgag cgaagaccat
      661 cgtccatcgc gagaaggcgt atctcgcccg ccacaagcac ccgctcccct cggagctcaa
      721 gctcggcgtc atggtcgagg taccctcgct gctgttccag ctcgacgaca tcgccaggac
      781 ggccgatttc ctctccgtcg ggtcgaacga cctcatgcag ttcctgttcg cggccgaccg
      841 tgagaaccgg ctcgtggcca atcgcttcga tcccctgaac tccgcgtcgc tgcgggccct
      901 gaagctcgtg gccgagcggt ccgaggcggc cggatgcccg gtgacggtgt gcggcgagat
      961 cggcggccgt ccgctcgagg ccatggcgct catcggcctc ggcttccggc agctgtccat
     1021 gtcgccggcc tccatcggtc ccgtgaaggc gatgatcctc gatgtcgacg cgggcgaggt
     1081 cacctccctc gtcgagcgcg agcttcgcgg tgccggaacc cgcgacagcc tgcgcccggc
     1141 gctcgcggcc tacgccgaga gccgcggcat cgcggcttga agctcgacct tcgatgaccc
     1201 tcgctcctcc cgcggaccgc ctcgacgcga tccttgcccg tcacgacatc atcacagcga
     1261 cgcttgccgc tgccccaacc tcggacacct tcgtcacgct ctcgcgcgag ctgtcggagc
     1321 tcgatccggt ggtggaggcc atcagggcct accgcgccgc ggagcagacc gtctcggagc
     1381 tcgatgcgct cgcgcgggac ccggagatgc gggcccttgc cgaggaggag cggccgggcg
     1441 ctctcgaggc cctcgagacc gccgcacaga acctgcgcct gctgctcctg cccaaggacg
     1501 aagcggacga gaagagcgcc atcctcgaga tccgggccgg aacggggggc gacgaggcgg
     1561 ccctgttcgc cggcgacctc ttccgcatgt acgcccgcta cgccgagctg aagggctggc
     1621 gcgtcgagat catctccgag agcgccggga cggcgggcgg ctacaaggag atcgtcgccg
     1681 agatcaaggg ccggggcgtg ttcgcgcggc tcaagttcga gagcggggtg caccgcgtgc
     1741 agcgcgttcc cgacaccgag acgcaagggc gcatccacac ctccgcggcg accgtcgcgg
     1801 tgctgcccga ggccgaggcc gtcgacatcg ccgtcaacga cgccgatctc aagatcgaga
     1861 cgatgcgcgc ccagggcgcc ggcgggcagc acgtcaacaa gaccgagtcg gccatccgcg
     1921 tgacccacct gccatccggc atcgtcgtct tcgtccagga ggagcgctcc cagcacaaga
     1981 accgcgcccg cgccatgacg ctcctgcgct cccgcctcta cgacgccgag cgcacccgca
     2041 aggatgcggc ccgggcggcc gaccgcaagg cgcaggtcgg ctcgggcgat cgctccgagc
     2101 gcatccgcac ctacaacttc ccgcaggggc gcatcaccga ccaccgcatc aacctgaccc
     2161 tctacaagct cgaggaggtg ctggccggcg gagccctcga cgaggtcatc gacgccctcg
     2221 tgaccgagca ccaggccgcg cagcttgcgg ccgagggcgt ggcgtgacct cgcccgcgcg
     2281 gggcggttcg cgacttcagc ttggtgccgc gaccacgagg caggacgccc tcggtgcagt
     2341 caggcgtgcc ctggaggcgg cgggcatcga gaccgcggcg cttgatgccc gggtgctgct
     2401 cgcctacggc ctcgggatcg accctgtcgc gcttgccgcc tacccggaca cgggactcgg
     2461 cgaggacggc gcgcggaggc tcgtggcggc ggtcgcgagg cgccttgccc gcgagccggt
     2521 ggccaggatc gtcggcgagc gggagttctg gggactgccc ttcgcgctgt cgcccgagac
     2581 cctcgtcccc cgaccggaaa gcgagacggt ggtcgagacc gcgctgcggc accgtcccga
     2641 gcgcacccga cgcgtcctcg acctcggaac cggctcgggg tgccttctcg tcgcgctcct
     2701 gcacgaaatc gctggcgcga ccgggatcgg cgtcgatcgc tctcccgcgg ccctcgcgac
     2761 ggcccggagc aacgccgccc gcaacggcgt cgccgaccgg gcctccttcc tcgcgggcga
     2821 ctggggtgcc gccctcgacg agcgcttcga cctgatcgtg gccaatccgc cctacatcgc
     2881 ctccggcgtc atccaaggcc ttgaaccgga ggtgcgcgcg catgaccctc tcctcgccct
     2941 cgacggcggc gccgatgggc tctcggccta tcgggcgatc ctcgatcagg ccgcaggcct
     3001 gctcgccgcg gcgggagtcg tcgccgtcga gatcggtttc gaccagggcg ctacggtccc
     3061 cgggctgggc cggggggccg ggctcgaggt ccttgaggtg gcccgcgatc tcgggggcca
     3121 gccccgggtg gttgccctga aacggccatc gttcccggcc atggctcctt gaacgcgggc
     3181 ggaaacgttc taaatccaca gggcacgccg cgaaaacgct tgttgaatcc agccggaaag
     3241 gctaggttgt cgaccggaga tcgtgatcgg tctcgtgaat cggcggcgag gccaagaacc
     3301 acccgccgga cggaccagac gaaacctacc gcgcgggttg ggggctttta gcagtccggc
     3361 gcggtcacga cgaacccaat cctgaaggac cacccggacg ctgatcagcc gcggtcggac
     3421 gacagacgac gaatgctcac gcgaacggcg cgaacggcgc cgtttggcaa aagccagctt
     3481 gcatcgcgtg gacatcacca gagccagcga gggtcgaagg cgagtatgag accaggacag
     3541 aacaggcgca tgcgtgggcg caaccg
//
LOCUS       DASQWN010000628         2949 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_474898, whole genome shotgun sequence.
ACCESSION   DASQWN010000628 DASQWN010000000
VERSION     DASQWN010000628.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2949)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2949)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2949
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_474898"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..125)
                     /locus_tag="VE686_11790"
     CDS             complement(<1..125)
                     /locus_tag="VE686_11790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009209046.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MoxR family ATPase"
                     /protein_id="HYY85164.1"
                     /translation="MTLRSLPASIDDTLKLLQGAGYVADRPLATVLFLALKLGRP"
     gene            complement(304..1110)
                     /locus_tag="VE686_11795"
     CDS             complement(304..1110)
                     /locus_tag="VE686_11795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011088410.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="xanthine dehydrogenase family protein subunit M"
                     /protein_id="HYY85165.1"
                     /translation="MYAFEYHRPTSIRQAASLLGKAEDAKVVAGGHTLLPTMKMRLAA
                     PANLIDLSQIADLRGIERSARSVTIGAMTTHSEVADSAEVKEAIPALAELAAMIGDPA
                     VRHRGTIGGSVANNDPAADYPAACLALAATIVTNKRKIPADEYFKGLFETALEEDEIV
                     TAVTFPIPQKAGYMKFRNPASRYALVGVFVAKRADGIRVAVTGAGSNGVYRWTAAEEA
                     LAKRFGAKSLEGLTHPAEGLNSDIHADATYRAHLIGVMARRAVAAATARE"
     gene            complement(1207..>2949)
                     /locus_tag="VE686_11800"
     CDS             complement(1207..>2949)
                     /locus_tag="VE686_11800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018261278.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin cofactor-binding domain-containing
                     protein"
                     /protein_id="HYY85166.1"
                     /translation="YDTGDEAFTLYTTSQNPHVARLVLSAFIGIAPEHKLRVIAPDVG
                     GGFGSKIFIYAEETVCVWAAKKVGRPVKWTSDRTEAFLCDAHGRDHVTHAEMALGEDG
                     RILGLRVATIANLGAYLSTFSSSVPTYLYAPLLSGQYDIPAIYCEVDGVYTNTAPVDA
                     YRGAGRPEATFVVERLVEVAARQLGMEPARFRKRNYIKKFPHQTPVIMTYDTGDYAAS
                     LNKALELADYQGFARRRRESARSGKLRGLGFSSYIEACGIAPSQAVGSLGAGVGLWES
                     AEVRVNPTGSIEVLTGSHSHGQGHETTFAQLVSDRLGVPIESVTIVHGDTDKVQFGMG
                     TYGSRSGAVGMSAIFKAIDKVIAKGKKVAGYVLEAAEGDIEFKDGKFSVAGTDRSLGF
                     GEVALQAYIAHKFSGQDLEPGLKEGAFYDPTNFTFPAGVHICEVEIDPETGIVAIAKW
                     TAVDDFGIVINPMIVEGQVHGGVAQGVGQALHEGALYDKDGQLVTASFMDYGMPRAED
                     LPSLTLAMTVTPCPSNPLGIKGCGEAGAIAAPAAVINAITDAVGHEDVRMPATPQEVW
                     RAAQKRRPMQLAAQ"
BASE COUNT          433 a          978 c         1056 g          482 t
ORIGIN      
        1 aacggccgcc cgagcttgag ggcgaggaac agcaccgtcg ccagcggccg gtcggccacg
       61 tagccggcgc cctgaagaag tttaagggtg tcgtcgatgg aggcgggcag ggatcgcagg
      121 gtcatctctc accgtcattc cggggcgacg cgtagcgctg agcccggagc ccacgaacac
      181 gtctactaac gcgtcatccg cgggcttgtc ccggggatcc cgtgcaggag agccctccga
      241 aaatgagatg gccgggtcaa gcccggccat gacgatcgag gaggcggctg gaggggaggc
      301 cccctactcc ctcgccgtgg ccgccgcgac ggcgcgccgg gccatgacgc cgatgagatg
      361 ggcgcggtag gtcgcgtcgg cgtggatgtc gctgttgagg ccttcggcgg gatgcgtgag
      421 cccctcgagc gacttcgcgc cgaagcgctt ggccagcgcc tcctcggcgg cggtccagcg
      481 atagacgccg ttcgaaccgg cgcccgtgac ggcgacgcgg atgccgtcgg cgcgcttggc
      541 gacgaacacg ccgacgagcg cgtaacgcga agccgggttg cggaacttca tgtagcccgc
      601 cttctgcggg atcgggaacg tcaccgcggt gacgatctca tcctcctcga gcgccgtctc
      661 gaacaggccc ttgaagtact cgtcggccgg gatcttgcgc ttgttcgtca cgatggtggc
      721 ggcgagcgcg aggcaggcgg cagggtagtc ggcggccggg tcgttgttgg cgaccgagcc
      781 gccgatggtg ccgcgatggc gcaccgccgg gtcgccgatc atcgcggcga gctcggcgag
      841 cgccgggatg gcctccttca cctcggccga gtccgcgacc tcgctgtgcg tcgtcatggc
      901 gccaatggtc accgagcgcg ccgagcgctc gatgccgcgc aaatccgcga tctggctcaa
      961 gtcgatgaga ttcgcgggcg cggccaggcg catcttcatg gtcggtaaaa gcgtgtgccc
     1021 gcccgccacg accttggcgt cctcggcctt gccgaggagc gacgcggcct gtcggatgct
     1081 cgtcgggcga tggtattcga aagcgtacat cggtgttctc cttcaatccg cgtcatcctc
     1141 ggccggagcg cgaagcgcgc agagccgagg acctcgtcgt cgtctcgtcc cgaggatgac
     1201 ggtgtttcat tgcgccgcaa gctgcatcgg gcggcgcttc tgcgccgcgc gccagacctc
     1261 ctgcggcgtt gcgggcatgc gcacgtcctc gtggccgacc gcatccgtga tggcgttgat
     1321 gaccgccgcc ggcgccgcga tggcgccggc ctcgccgcac cccttgatgc cgagcgggtt
     1381 cgacgggcag ggcgtgaccg tcatggcgag cgtcagcgac ggcaggtcct cggcgcgcgg
     1441 catgccgtaa tccatgaagc tcgccgtcac gagctggccg tccttgtcgt agagggcgcc
     1501 ttcgtgcagc gcctggccca cgccctgcgc cacgccgcca tgcacctggc cctcgacgat
     1561 cataggattg atgacgatcc cgaaatcgtc cacggccgtc cacttggcga tcgccacgat
     1621 gccggtctcg gggtcgatct cgacctcgca gatgtggacg ccggccggga aggtgaagtt
     1681 ggtcgggtcg tagaaggcgc cctccttcag ccccggctcg aggtcctgcc ccgagaactt
     1741 gtgggcgatg taggcctgca gggcgacctc gccgaagccg agcgaccggt ccgtgccggc
     1801 gaccgagaac ttgccgtcct tgaactcgat gtcgccctcc gccgcctcga gcacgtagcc
     1861 cgccaccttc ttgcccttgg cgatgacctt gtcgatggcc ttgaagatcg ccgacatgcc
     1921 gaccgcgccc gagcgcgagc cgtacgtgcc catgccgaac tgcaccttgt cggtgtcgcc
     1981 gtggacgatg gtcacgctct cgatgggcac gccgagcctg tccgacacga gctgcgcgaa
     2041 ggtggtctca tggccctggc catggctgtg ggagccggtg agcacctcga tcgaccccgt
     2101 cgggttgacc cgcacctcgg ccgattccca caagccgacg ccggcgccga gcgagcccac
     2161 cgcctgcgag ggtgcaatgc cgcaggcctc gatgtagctc gagaacccga gcccgcggag
     2221 cttgccggag cgggcgctct cgcggcggcg gcgcgcgaag ccctggtagt cggcgagttc
     2281 cagggccttg ttgagcgagg ccgcgtagtc gcccgtgtcg taggtcatga tcacgggcgt
     2341 ctggtgcggg aatttcttga tgtagttgcg cttgcggaag cgggcgggct ccatgccgag
     2401 ctgccgcgcc gccacctcga cgaggcgctc gacgacgaag gtggcctcgg gccgcccggc
     2461 tccgcggtag gcgtcgacgg gcgccgtgtt ggtgtagacg ccgtcgacct cgcagtagat
     2521 cgcggggatg tcgtattggc ccgacagaag cggggcatag aggtacgtcg gcaccgacga
     2581 cgagaacgtc gagagatagg cgccgaggtt ggcgatggtg gcgacgcgga ggccgaggat
     2641 cctgccgtcc tcgccaagcg ccatctcggc atgggtgacg tggtcgcggc cgtgggcgtc
     2701 gcacaggaac gcctcggtgc ggtcgctcgt ccacttcacg ggccggccga ccttcttcgc
     2761 cgcccagacg cagaccgttt cctcggcgta gatgaagatt ttggagccga agccgccgcc
     2821 gacgtcgggc gcgatcacgc gcagcttgtg ctcgggcgcg atgccgatga aggccgagag
     2881 gacgaggcgc gcgacatgcg ggttctggct cgtggtgtag agcgtgaagg cctcgtcgcc
     2941 ggtgtcgta
//
LOCUS       DASQWN010000629         2052 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_971857, whole genome shotgun sequence.
ACCESSION   DASQWN010000629 DASQWN010000000
VERSION     DASQWN010000629.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2052)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2052)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2052
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_971857"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            677..961
                     /locus_tag="VE686_11805"
     CDS             677..961
                     /locus_tag="VE686_11805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006020314.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4242 domain-containing protein"
                     /protein_id="HYY85167.1"
                     /translation="MALRRFIIERDIPKVGSFERDQLRGAAAKSNEALDQLAPDIQWV
                     ESYVADDKTFCVYLAKDEATIRKHAEISGFPASIVTEVRKMIDPTTARPD"
     gene            complement(1000..1785)
                     /locus_tag="VE686_11810"
     CDS             complement(1000..1785)
                     /locus_tag="VE686_11810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019904690.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0043461 - proton-transporting ATP synthase
                     complex assembly [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP12 family protein"
                     /protein_id="HYY85168.1"
                     /translation="MPDDPAGDWFPSADAPKDPLAAARQAMRPPPPKRFYREAGVAER
                     DGAFLLVLDGRPAHTPARTPIAVPTQALGEALAAEWQAQADAIDPATMPITRIVNSAL
                     DGVAQNRGAVVDDVVRYAGSDLVCYRAGEPERLVKAQAAAWDPVLAFARDRLGARMVL
                     SQGVMHVTQPERAVAAVRTAVEQVPPPFALAALHVMTTLTGSVLIPLALAAGELSPDE
                     AWDAAHVDERYQESLWGEDEEAMERRRRRKEDFLAAATVYRLA"
     gene            complement(1813..>2052)
                     /locus_tag="VE686_11815"
     CDS             complement(1813..>2052)
                     /locus_tag="VE686_11815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013948156.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD hydrolase-like protein"
                     /protein_id="HYY85169.1"
                     /translation="PTMLRQAMGEVDARPSATVMVGDTSFDMAMARAAGVRAIGVSWG
                     YHQVAALREAGAEVIVDRVDRLPEALGLAAMPGVA"
BASE COUNT          310 a          762 c          710 g          270 t
ORIGIN      
        1 ccctggtccc gcgcttcggc gctacgaggg agggctgcct cccgagcacc tcaagccgct
       61 tgcgcgcgga cctctctcgg cagtgggcct cggatcgaaa ccgcatcccg gggacgaacc
      121 cgcaaggcgc agaaccggcc cgaggtccgc cccggagagg acggacggga ccccgcctcc
      181 cggggacgcg cctggcagcc gcgccgatcc cggtcgtcgg taaggaccct ggaccacggg
      241 acgtgacccc cgcgacccgg acaccgcatc agcccttcgg acctccaggc gtctccgcct
      301 tcgctcctcg gaccaccgcc tcacgaagtt ccaactgtcg ccagccgaac ctcgctcgcc
      361 gatgccgccc tgcaaccaga cacctccgga agcacccctt gccgggcggg acggcgacaa
      421 agaagcagct ttcaggactg ttgtcaagaa cagaagagaa acgatcgccc cttatcatct
      481 cgggctcggg cggctgagca cccgcaccca accacgtcct cggctgcagg cgtcctcctc
      541 tattcggcac gctttaggac gggctctgcc ccgtcggccc gcgccggagt acactgcttg
      601 cgcaacggaa gggagatggc gcgcccgccg ccgcgggggc atcatgcccg tctactcacc
      661 tcagaggagc tgagccatgg cccttcgtcg tttcatcatc gagcgggata tcccgaaggt
      721 cggcagcttc gagcgcgacc agcttcgcgg cgccgccgcg aagtcgaacg aagcgctcga
      781 ccagctcgcc cccgacatcc agtgggtcga gagctacgtc gccgacgaca agaccttctg
      841 cgtctacctc gccaaggacg aggccaccat ccgcaagcat gcggagatca gcggcttccc
      901 cgcctcgatc gtcaccgagg tccgcaaaat gatcgacccg acaacggcgc gcccggactg
      961 agcggcgtcg gacggctccg ggctacgccg cgcgtcccct cacgcgagcc gatagacggt
     1021 ggcggcggcg aggaagtcct ccttgcggcg gcggcggcgc tccatcgctt cctcgtcctc
     1081 gccccacagg ctttcctggt agcgctcgtc gacgtgggcg gcgtcccagg cctcgtcggg
     1141 cgagagctcg ccggccgcca gggcgagcgg gatcagcacc gagcccgtca gggtggtcat
     1201 gacatgcagg gccgccaagg cgaagggcgg cgggacctgc tcgacggcgg tgcgtaccgc
     1261 cgccacggcg cgctcgggct gggtcacgtg catgacgccc tgcgagagca ccatgcgcgc
     1321 cccgagcctg tcgcgcgcga aggcgaggac gggatcccac gccgccgcct gggccttgac
     1381 gaggcgctcg ggctcgccgg cgcggtagca gacgaggtcg gagccggcat agcgcacgac
     1441 gtcgtcgacg acggcgcccc gattctgggc gacgccgtcg agcgccgagt tgacgatgcg
     1501 ggtgatcggc atggtcgcgg gatcgatcgc gtccgcttgc gcctgccact ccgccgcgag
     1561 ggcttcgccg agggcctgcg tcgggacggc gatgggggtg cgggcgggcg tgtgggcggg
     1621 gcgtccgtcg aggacgagca ggaacgcgcc gtcgcgctcg gcgacgcccg cctcgcggta
     1681 gaagcgcttc ggcggcggcg gacgcatcgc ctggcgcgcc gccgcgagcg ggtccttcgg
     1741 ggcgtcggcg gaggggaacc agtccccggc gggatcgtca ggcatgcgcg acagataggc
     1801 gagcgccggc ccttatgcga cccctggcat ggccgcgagg ccgagcgcct cgggcagccg
     1861 atcgacgcgg tcgacgatga cctccgcccc tgcttcccgc agggccgcca cctgatggta
     1921 gccccacgac accccgatcg ccctgactcc ggcggcccgc gccatggcca tgtcgaagga
     1981 ggtgtcgccg accatcaccg tcgcgctcgg ccgggcgtcg acctccccca tcgcctgccg
     2041 cagcatggtg gg
//
LOCUS       DASQWN010000630         2609 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_558284, whole genome shotgun sequence.
ACCESSION   DASQWN010000630 DASQWN010000000
VERSION     DASQWN010000630.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2609)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2609)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2609
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_558284"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..821)
                     /locus_tag="VE686_11820"
     CDS             complement(<1..821)
                     /locus_tag="VE686_11820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019403709.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system F family protein"
                     /protein_id="HYY85170.1"
                     /translation="MSANALVVGCLAATAAGGFAFVFLEPLLSGEGRARKRQQALVGA
                     GAARRSERIVAMSRREQVAQSLKELDKREKSRSRATIEQRLAHAGLEWTKRKFLVVSA
                     AAGVLLGLLVLTLSGSMLTAGAALFAGGLGLPRWILSFLKRRRINRFIEELPNAMDII
                     VRGIRSGLPLGDCLRIIASEAREPVKSAFRSIVDEQTLGLSVPEAVGKLHDRMPTAEA
                     SFFAIVVAIQQKAGGNLSEALSNLSRVLRERKKMKGKIVAMSMEAKASAVIIAALP"
     gene            complement(818..2278)
                     /locus_tag="VE686_11825"
     CDS             complement(818..2278)
                     /locus_tag="VE686_11825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015929456.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CpaF family protein"
                     /protein_id="HYY85171.1"
                     /translation="MFGKRPTNGQAAAPVTRPAVALSQVPVLPETEAPRFQAPEPLPS
                     TPLAIAQETPRSEEYYQTKSMIFGALIEAIDLAQLSRLDADSAREEIRDIVTEIIALK
                     NVVMSIAEQEELLDDICNDVLGYGPLEPLLARDDIADVMVNGAGRTYIEVAGKIQMTN
                     VRFRDNQQLMNICQRIVSQVGRRVDESSPICDARLPDGSRVNVIAPPLAIDGPALTIR
                     KFKKDKLTLDQLVRFGAISPHGAKVLEIIGKVRCNIVISGGTGSGKTTLLNCLTRYIE
                     DDERIITCEDSAELQLQQPHVVRLETRPPNLEGQGQVTMRDLVRNCLRMRPERIIVGE
                     VRGPEAFDLLQAMNTGHDGSMGTLHANSPRECLSRMESMITMGGFALPSRAIREMICA
                     SVDVVIQAARLRDGSRRITHVTEVMGMEGDVIVTQDVVLYDILGEDPSGRLLGRHRST
                     GIGRPRFWERARYYGEEARLAAALDAMEQASAEEAA"
     gene            complement(2298..>2609)
                     /locus_tag="VE686_11830"
     CDS             complement(2298..>2609)
                     /locus_tag="VE686_11830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003598119.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CtpF protein"
                     /protein_id="HYY85172.1"
                     /translation="RPNDRLPKVVLNQVGMPKRPEIPAAEFATALGTELAAVISFDAQ
                     LFGTAANNGQMIAEVQPSGKAADILADLAGAVTGRAEQKSGRGGFLEPILARLSRRKA
                     S"
BASE COUNT          396 a          851 c          907 g          455 t
ORIGIN      
        1 ggcagcgccg cgatgatgac ggcggaagcc ttcgcttcca tgctcatggc gacgatcttg
       61 cccttcatct tcttccgctc gcgcaagacg cgcgacaggt tgctgagggc ttccgatagg
      121 ttgccgcctg ccttctgctg aatggcaacc acgatggcga agaagcttgc ctccgcggtc
      181 ggcatccggt cgtggagctt gccgacggct tcgggtaccg agagcccaag cgtctgctcg
      241 tcgacgatcg accggaacgc cgacttgacc ggctcgcggg cctcgctggc gattatgcgc
      301 aggcaatctc cgagcgggag tccggagcgg atgccgcgca cgataatgtc catcgcattc
      361 ggaagctcct cgatgaagcg gttgatgcgg cggcgcttga gaaagctcag gatccatcgc
      421 ggaaggccga ggccacccgc aaagagagcc gcaccggcgg tgagcatgct gccgctcagc
      481 gtcagcacaa ggaggccgag caggactccg gcggctgcgc ttacgacgag aaacttgcgc
      541 ttcgtccact cgaggcccgc atgggcgagc cgctgctcga tggttgcgcg actgcgggac
      601 ttttcgcgct tgtcgagttc tttcagggat tgcgcgacct gctcgcgacg gctcatcgcg
      661 acgatccgct cgctccgccg cgcggcgccg gcacccacga gcgcctgctg gcgcttccgg
      721 gcccgtccct ctccggagag caacggttcg aggaagacga atgcgaagcc gcccgcggcc
      781 gtggcggcga gacagccgac gacgagggcg ttcgcgctca cgccgcctcc tccgccgaag
      841 cctgctccat ggcgtcgagc gcggccgcga gacgcgcctc ctcgccatag tagcgcgcgc
      901 gctcccaaaa gcggggacgc ccgattccgg tcgagcgatg gcgcccgagc agcctgcccg
      961 agggatcctc gcccaggatg tcgtacagga cgacgtcctg ggtgacgatc acgtcgcctt
     1021 ccatgcccat cacctcggtc acgtgcgtga tgcggcgcga gccgtcccgc aggcgcgcgg
     1081 cctggatcac cacgtcgacc gaggcgcaga tcatctcgcg tatggcacgc gagggcagcg
     1141 cgaagccgcc catcgtgatc atcgattcca tccgcgacag gcactcgcgc ggggagttgg
     1201 catgcagggt ccccatggac ccgtcgtggc ctgtgttcat ggcctggagc aggtcgaacg
     1261 cctccgggcc gcgcacctcg ccgacgatga tccgctccgg tcgcatgcgc aggcagttgc
     1321 ggacgaggtc gcgcatggtg acttggccct ggccttccag gttgggcggg cgcgtctcga
     1381 ggcggaccac gtgcggctgc tgcagctgca gctcggccga gtcctcgcag gtgatgatgc
     1441 gctcgtcgtc ctcgatgtag cgcgtcaggc agttcagcag ggtggtcttg ccggagccgg
     1501 tgccgccgga gatcacgatg ttgcagcgga ccttgccgat gatctcgagc accttggcac
     1561 cgtgcggcga gatcgcaccg aagcggacaa gctggtcgag ggtcagcttg tccttcttga
     1621 atttgcggat ggtgagcgcg ggaccgtcga tggcgagcgg cggagcgatc acgttgacgc
     1681 gcgatccgtc cggaaggcgc gcgtcgcaga tgggcgagga ctcgtcgacg cgccgcccga
     1741 cctggctgac gatccgctgg cagatgttca tcagctgctg attgtcgcgg aagcggacgt
     1801 tggtcatctg gatcttgccg gcgacctcga tgtacgtcct gccggcgccg ttcaccatca
     1861 cgtcggcgat gtcgtcccgt gcgagcagcg gctcgagcgg tccgtagccg agcacgtcgt
     1921 tgcagatgtc gtcgagcagt tcctcctgct cggcgataga catgacgacg ttcttgaggg
     1981 cgatgatctc cgtgacgatg tcgcggattt cctcacgggc ggaatccgcg tcgagccgcg
     2041 acagctgcgc gaggtcgatt gcctcgatca gcgcgccgaa gatcatgctc ttggtctggt
     2101 agtactcctc cgagcggggc gtctcctgcg cgatcgcgag cggcgtcgag gggagcggct
     2161 cgggagcttg gaatcgcggc gcctccgtct ccggcagaac cgggacctga gagagcgcga
     2221 cggcgggccg cgtcaccggc gcagccgctt gtccgttggt tggtcgcttg ccgaacatgc
     2281 ttgtcgctag tccctgctca cgaggccttg cggcgcgaga gccttgcgag gatcggctcg
     2341 aggaagccgc cgcggccgct cttctgctcg gctcggcccg tgaccgcgcc ggcgagatcg
     2401 gcgaggatgt cggccgcctt gccggacggt tgcacctccg cgatcatctg accgttgttg
     2461 gccgctgtcc cgaacagctg agcatcgaag gagatgacgg cggcaagctc ggtcccgagg
     2521 gcggtcgcga attcggcggc cggaatttcg ggccgcttcg gcatgccgac ctggttcagg
     2581 acgaccttcg gcaggcggtc gttcggacg
//
LOCUS       DASQWN010000631         5336 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_872387, whole genome shotgun sequence.
ACCESSION   DASQWN010000631 DASQWN010000000
VERSION     DASQWN010000631.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 5336)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5336)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5336
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_872387"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..763)
                     /locus_tag="VE686_11835"
     CDS             complement(<1..763)
                     /locus_tag="VE686_11835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013166534.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0042597 - periplasmic space [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tripartite tricarboxylate transporter substrate
                     binding protein"
                     /protein_id="HYY85173.1"
                     /translation="MSHQTRRRVLAAMAAGAVLGFGTAERASAQAFTKQVTIIVPYAP
                     GGTSDILARLLAPKLSEAIGQPVIVENKPSASGNIGADFVAKAAGDGHTLLITDVGTL
                     ATQPSLVKKLSFDVQKDLVPVTMVMFSPYLLAVHPSVPASTWDELAAYAKANPGKLNI
                     GNSGVGSIQHLTALVIQKKRGIDWMHVPYRGGAAAIRAVVSNESNVILNGALPTIPFV
                     AQNQLKGIAVSGDKRLDQLPNLPTFKEIGMPIVETG"
     gene            complement(848..1627)
                     /locus_tag="VE686_11840"
     CDS             complement(848..1627)
                     /locus_tag="VE686_11840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012318705.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HYY85174.1"
                     /translation="MDLGIKGRSALVCAASKGLGKACAMSLAREGVSVTITARTRETL
                     EATADEIRRETNAKVLVVVGDIATPEGRAAALEACPTPDILVNNAGGPPPGDFRDWDR
                     EIWIKALDANMLAPIELIKATVDGMMDRGFGRIVNITSGAVKAPIDYLGLSNGARSGL
                     TGFVAGLARQTARRGVTINNLLPGPFDTDRMRGNVLASATKAGKDPEQALRERAAQNP
                     SGRFGTPAEFGATCAFLCSTHAGYITGQNVLMDGGAYPGTF"
     gene            complement(1788..2093)
                     /locus_tag="VE686_11845"
     CDS             complement(1788..2093)
                     /locus_tag="VE686_11845"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY85175.1"
                     /translation="MDELLGWLRDQKAGLGTFAGFQERTMQLASRNEDHVAAFQLLSG
                     LAGRFVSAYERMPLGTDVANAALTTLLRLVEAAARSAHGSADEQLRVLDEIARADLG"
     gene            2198..3091
                     /locus_tag="VE686_11850"
     CDS             2198..3091
                     /locus_tag="VE686_11850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019400623.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HYY85176.1"
                     /translation="MGTRLEEIGGRLRAYRLGMNLSALNVAERIGISRAAVYRLEKGE
                     LVKIDTLEKIAELLEVSLPSLLGVGVEYYSNAIAFFERMRQLEQNVYHVTGNFSPFSF
                     LLVSDAYMEHLRDMLVEAIPAGAHDRKNTVEYIDKVLEILQERRVAAARKRTPVASIV
                     GAQDVERFLRIGLVGRFGLPAAIQAERRAAARAEVERLVGLFQRPPLGVQLGVVEDMP
                     PTQTFQILETRDGVAVTLSPYRLGDQPNVSSGIAMITSAPEAVRLFKDNLNAQWERAH
                     KGESGAEILRRVLERTADEPR"
     gene            3249..4091
                     /locus_tag="VE686_11855"
     CDS             3249..4091
                     /locus_tag="VE686_11855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007010755.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroorotate dehydrogenase electron transfer
                     subunit"
                     /protein_id="HYY85177.1"
                     /translation="MQALLDGVTVPSALQRSADDVVATVVSNAWVNSEYKHLVLAAPA
                     PAPAALAGQFFQLECPATADDRPFFRRPMSVYKADARRGEVEFLYKVTGEGTRGLATL
                     AAGNRMRILGPLGVGFRLDPAWREIVAVGRGVGLATLAPLAEAAAAQGIGVTAVFSAR
                     GPAQVMSVERFASAGARVEVVLDSDRTSDVAQVEALMRRLIGEGRADALFTCGSNRLM
                     LLLQRLGREFSIPGQVAMEQQMACGLGMCFCCVRSFRSGDDTVSRRVCWEGPVFDLQE
                     ALSW"
     gene            4085..5023
                     /locus_tag="VE686_11860"
     CDS             4085..5023
                     /locus_tag="VE686_11860"
                     /EC_number="1.3.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009449961.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004152 - dihydroorotate dehydrogenase
                     activity [Evidence IEA];
                     GO_process: GO:0006221 - pyrimidine nucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroorotate dehydrogenase"
                     /protein_id="HYY85178.1"
                     /translation="MVDLRVRIGRLALANPIMPASGTFADGLSQVVPFDRLGALVTKT
                     ITAELRGGNPTPRVAEVDSGMLNSIGIPSQGLDYFLGKTLPFYRAFKSPLVVSISAPT
                     VDAFAEVAARLEVPGIAAIEANISCPNIEEDGKAFAMNAKATDLVVAKLRRATALPLW
                     VKLTPNTGDVAEVARAAEQAGAEALVVANTILAMAIDVETFRPKLGNIMGGLSGPAVK
                     PIMVRMTYQCAKAVGIPVIGCGGIATAEDAIEYMLAGASAVQVGTATFLRPRAMLDVL
                     DGLTAYCERKGLARVDALIGAVVDTGMVVDELEAVP"
     gene            5020..>5336
                     /locus_tag="VE686_11865"
     CDS             5020..>5336
                     /locus_tag="VE686_11865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012329538.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Zn-dependent hydrolase"
                     /protein_id="HYY85179.1"
                     /translation="MTAAIVPIKADPRTDKEIATDLFDELARATGDGVGITRECYAKG
                     EDRAIDIYRTCAEAFGLRTSADAAANLLVTLPGDDGAAPGIIVGSHADSVPQGGNYDG
                     AAGV"
BASE COUNT          795 a         1824 c         1850 g          867 t
ORIGIN      
        1 atccggtctc gacgatcggc atgccgatct ccttgaacgt cggcaggttc ggcagctgat
       61 ccagccgctt gtcgcccgag acggcaatgc ccttgagctg gttctgggcg acgaacggga
      121 tcgtgggaag cgcgccgttc aggatgacgt tgctctcgtt cgaaaccacc gcccggatcg
      181 cggcggcgcc gccccggtag ggaacgtgca tccagtcgat gccgcgcttc ttctggatga
      241 cgagcgcggt cagatgctgg atcgaaccga cgccgctgtt gccgatattg agcttgcccg
      301 ggtttgcttt ggcgtaggcc gcgagctcgt cccaggtgct cgccggcacg gaggggtgca
      361 cggcgaggag atagggcgag aacatcacca tcgtgaccgg cacgaggtcc ttctggacgt
      421 cgaaggacag cttcttgacc aggctcggct gcgtcgcgag cgtgccgacg tccgtgatca
      481 ggagcgtgtg gccgtcgccc gccgccttgg cgacgaaatc ggcgccgatg ttgcccgacg
      541 cgctcggctt gttctcgacg atgacgggct ggccgatggc ctccgacagc ttcggagcga
      601 ggagccgcgc caggatgtcg gaggtgccgc ctggcgcgta gggcacgatg atggtgacct
      661 gcttggtaaa ggcctgcgcc gacgcgcgct cggccgtacc gaagccgaga actgcgccgg
      721 cggccatcgc tgcaagcacg cggcgccgag tctggtggct catcgtcgtt tcctcccgcc
      781 gcgttgtccc gcggtccgtg catgctactc cgggttttcg gccggcggga accccgggat
      841 gcggcggcta gaaggttccc ggataggcgc cgccgtccat cagcacgttc tggccggtga
      901 tgtagccggc gtgcgtgctg cacaggaagg cgcaggtggc gccgaactcg gccggcgttc
      961 cgaagcgccc ggacgggttc tgggcggcgc gctcccgaag ggcctgctcg ggatccttgc
     1021 cggccttggt ggcactcgcg agaacgttgc cgcgcatccg gtcggtgtcg aacggcccgg
     1081 gaagaaggtt gttgatggta accccgcgcc gtgcggtctg gcgagcgagc cccgcgacga
     1141 agccggtcag ccccgagcgg gcgccgttcg acaggccgag atagtcgatc ggcgccttca
     1201 cggcgcccga ggtgatgttg acgatgcggc cgaagccccg gtccatcatg ccgtcgacgg
     1261 tcgccttgat gagctcgatc ggggcgagca tgttcgcgtc gagagccttg atccagatct
     1321 cgcggtccca atcccggaag tcacccggag gcgggccgcc ggcgttgttg acgaggatgt
     1381 cgggagtggg gcacgcctcc agcgccgcgg cgcggccttc gggtgtcgcg atatcgccga
     1441 cgaccacgag gactttggcg ttcgtctcgc ggcgaatctc atcggcggtc gcctcgaggg
     1501 tttcgcgcgt gcgagcggtg atggtcaccg agacgccctc gcgggcaagg ctcatggcgc
     1561 acgccttgcc gaggcccttg ctggcggcgc aaacgagggc gctccggccc ttgatcccta
     1621 gatccatcgt cgtctcctcc ggtccgatac ttcgttcggt gtgtcgcttg gctcactgca
     1681 atatagaagc tcggccgcct tggcgatgcg cgtcagcact ggtggcgcga gccgaagcgg
     1741 gcggctccgg ctgatcgcga tccgagatat cgcggcctgg gcttcgccta cccgagatcg
     1801 gcgcgagcga tctcgtcgag aacgcggagc tgctcgtccg ccgagccgtg cgccgacctc
     1861 gcagccgcct cgacgaggcg aagcaacgtc gtgagcgccg cgttggcgac atcggtcccg
     1921 agcggcatgc gctcataggc ggacacgaaa cggccggcga ggccggagag aagctggaac
     1981 gcagcgacat ggtcctcgtt gcgcgaggcc agctgcatcg tcctttcctg gaagccggcg
     2041 aacgtgccga gaccggcctt ctgatccctc agccatccca gcagctcgtc catgcgatcc
     2101 ctcgtcgacg ctccgcagcc acggccttgc cgtttgcggt agattggcaa ggttgccgtg
     2161 tataaagttt tagacgggtt gggaagagcg cgacgtcatg gggaccagac ttgaggagat
     2221 tggcgggcga ctccgggcgt accgactcgg catgaacctc tcggccctga acgtcgccga
     2281 acgcatcggc atctcgcggg ccgccgtcta ccggctcgag aagggcgagc tcgtcaaaat
     2341 cgacaccctg gaaaagatcg ccgagctgct cgaggtctcg ctgccgtcgc tcctcggcgt
     2401 cggcgtcgag tactacagca acgccatcgc cttcttcgag cgtatgcggc agctcgagca
     2461 gaacgtctac cacgtcaccg gcaacttctc gccgttctcg tttctgctcg tctccgacgc
     2521 ctacatggag cacctcaggg acatgctcgt cgaggccatc ccggccggag cccatgaccg
     2581 caagaacacg gtcgaataca tcgacaaggt tctcgagatc ttgcaggaac gccgcgtcgc
     2641 cgcggcccgc aaacggacgc cggtcgcgag catcgtcggc gcgcaggacg tcgagcgctt
     2701 cctgcgcatc ggcctcgtcg gtcgcttcgg gctgccggcc gccatccagg ccgagcgccg
     2761 cgccgcggcc cgggcggaag tcgagcgcct ggtcgggctc ttccagcgtc cgccgctggg
     2821 cgtccagctc ggggtcgtcg aggacatgcc gccgacgcag accttccaga ttctcgagac
     2881 ccgcgacggc gtcgcggtca cgctgagccc gtatcgcctg ggcgaccagc cgaacgtctc
     2941 gtcgggcatc gccatgatca cctcggctcc cgaggcggtg cgcctgttca aggataacct
     3001 caacgcccaa tgggaacgcg cgcacaaggg cgagagcggc gccgagatcc tgcggcgcgt
     3061 cctcgagcgc accgcggacg agccgcgcta gcgcaccccc acgggcttga acccggggca
     3121 tcgccgtggt agtctcaaaa ctgagacgcg gcccttgtgc tgcccgcgtc ctgagcattc
     3181 gtgcgcgagc ggcggcccgg attggatgcc gagcgcggct gcgcaccctt ccgaccgcag
     3241 gcgtggcgat gcaagctctt ctcgacggcg tgacggtgcc ttcggcgttg cagcgcagcg
     3301 cggacgacgt cgtcgcgacc gtcgtgtcga acgcctgggt caactccgaa tacaagcacc
     3361 tcgtccttgc cgcccccgcc ccggcgccgg ctgctctggc gggccagttc ttccagctcg
     3421 aatgcccggc gacggcggac gacaggccgt tcttccgccg cccgatgagc gtctacaaag
     3481 ccgacgctcg ccgaggcgag gtcgagttcc tctacaaggt cacgggtgag ggcacgcgcg
     3541 ggctcgcgac gctcgccgcc ggcaaccgga tgcgcatcct gggaccgctc ggggtggggt
     3601 tccgcctcga tcccgcgtgg cgcgagatcg tcgccgtcgg gcgcggcgtc ggtctcgcga
     3661 ccctggcccc gcttgccgag gcggcggccg cgcaggggat cggcgtgacg gccgtgttca
     3721 gcgcgcgcgg gccggcgcag gtgatgtcgg tcgagcgctt cgcgtcggcc ggcgcccgcg
     3781 tcgaggtcgt gctcgacagc gaccggacga gcgacgtcgc gcaggtcgag gcgctgatgc
     3841 gccgcctgat cggggagggc agggcggacg ccctgttcac ctgcggctcg aaccgcctca
     3901 tgctgctgct tcagcgcctc ggccgcgagt tctccatccc cgggcaggtg gcgatggagc
     3961 agcaaatggc ttgcggcctc ggcatgtgct tctgctgcgt ccgcagcttc cgctccggcg
     4021 acgacacggt cagccgccgc gtgtgctggg aaggtccggt gttcgacctc caggaggcgc
     4081 tctcatggta gacctgcggg ttcggattgg ccgcctggcg ctcgccaatc cgatcatgcc
     4141 ggcctcgggc actttcgccg acgggctctc gcaggtggtg cctttcgacc gcctcggcgc
     4201 gctcgtcacg aagacgatta cggcggagct gcgcggcggc aatccgacgc cgcgggtggc
     4261 cgaagtcgac agcggcatgc tgaactcgat cggcatcccg agccaggggc tcgattactt
     4321 cctgggcaag acgcttccat tctatcgcgc gttcaagagc cccctcgtcg tcagcatctc
     4381 cgcgccgacg gtcgacgcct tcgcggaggt ggccgcacgt ctggaggtgc ccggcattgc
     4441 ggcgatcgag gcgaacatct cctgtccgaa catcgaggag gacggcaaag ccttcgccat
     4501 gaacgccaag gcgacggacc tcgtcgtcgc gaagctgcgc cgggccacgg ccctgccgct
     4561 ctgggtcaag ctgacgccca acaccggcga tgtcgccgag gtggcgcgcg ccgccgagca
     4621 ggccggcgcc gaggcgctcg tcgttgcgaa cacgatcctc gccatggcga tcgacgtcga
     4681 gaccttccgc cccaagctcg gcaacatcat ggggggcctc tcgggccctg ccgtgaagcc
     4741 catcatggtg cgcatgacct atcaatgcgc caaggcggtc ggcatcccgg tcatcggctg
     4801 cggcggcatc gcgacggccg aggacgcgat cgaatacatg ctcgccggcg cctcggccgt
     4861 gcaggtcggg acggccacct tcctgcgtcc ccgcgcgatg ctcgacgtcc tcgacggcct
     4921 caccgcctac tgcgagcgca aggggttggc gcgggtcgat gcgcttatcg gcgccgtggt
     4981 cgacaccggg atggtcgtcg atgagctcga ggcggtgccg tgaccgccgc gatcgtgccg
     5041 atcaaggccg acccgcgtac ggacaaggag atcgcaaccg acctcttcga cgagctcgcc
     5101 cgcgcgacag gggacggcgt cggcatcacg cgcgagtgct acgccaaggg cgaggaccgc
     5161 gccatcgaca tctaccgcac ctgcgccgag gccttcggac tacggacgag cgccgatgcg
     5221 gcggccaacc ttctcgtgac gttacccggg gacgacggcg ccgcgccggg catcatcgtc
     5281 ggttcgcacg ccgactccgt gccccagggc ggcaactacg acggcgccgc cggcgt
//
LOCUS       DASQWN010000632         4842 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_872431, whole genome shotgun sequence.
ACCESSION   DASQWN010000632 DASQWN010000000
VERSION     DASQWN010000632.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 4842)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4842)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4842
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_872431"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..315)
                     /locus_tag="VE686_11870"
     CDS             complement(<1..315)
                     /locus_tag="VE686_11870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012753204.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005829 - cytosol [Evidence IEA];
                     GO_function: GO:0001072 - transcription antitermination
                     factor activity, RNA binding [Evidence IEA];
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0003723 - RNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cold-shock protein"
                     /protein_id="HYY85180.1"
                     /translation="MEGTEAEATVKWFNGTKGFGFVELSDGTRDAFLHMQAVRNAGYE
                     SLDPGTKLRVKVAEGQKGPQVTEVMSVDTSTAQPQAPRAPGGFGDRGGFGGGGGDRGY
                     GGG"
     gene            complement(638..1810)
                     /locus_tag="VE686_11875"
     CDS             complement(638..1810)
                     /locus_tag="VE686_11875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007067987.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mandelate racemase/muconate lactonizing enzyme
                     family protein"
                     /protein_id="HYY85181.1"
                     /translation="MKIVAIRDIVAPIKSNIANAYIDFSTMTASVVAVVTDRMVGGRP
                     VVGFGFNSNGRYAPQGLLRERFIPRLLAATPEDYQGEDGFIDPHRAWGMMMKNEKPGG
                     HGERSVAVGVLDMALWDALAKAHGVPLWRLLADRYNGGQADATAWVYAAGGYYYPGKG
                     LEDLQDEMRSYLDRGYSTVKMKVGLVPLDEDLARIEAALDVVGGDGSRLCVDVNGRFD
                     LEEAIRFGNAIAAYGVKWYEEPLDPLDYLAHAALATTYRPPLATGENLFSMQDARNLI
                     RHGGLRPDRDFLQFDPALSYGLVEYLRTLDMMRAHGWSPRRCVPHGGHQFALNIAVGL
                     GLGGNESYPDVFAPFGGFADEVPVVDSRVAMPDVPGIGFEAKNALYEVMRPLLSDA"
     gene            complement(1836..3440)
                     /locus_tag="VE686_11880"
     CDS             complement(1836..3440)
                     /locus_tag="VE686_11880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012333921.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_process: GO:0006415 - translational termination
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor 3"
                     /protein_id="HYY85182.1"
                     /translation="MTSNTHPGDGDPIARRRTFAIISHPDAGKTTLTEKLLLFGGAIQ
                     LAGEVKAKKNRVSTRSDWMGIERERGISVVTSVMTFEYGDCVFNLLDTPGHEDFSEDT
                     YRTLTAVDSAVMVIDAAKGIEARTRKLFEVCRLRDIPIVTFINKMDRETRDPFDLLDE
                     IEKTLALDTAPVTWPIGRGRSFAGTFDLRRNVVRRLDADEEPTPVSGPEDPLIDDLLP
                     PEEVAAWRDEVALAQEACKPFALQPFLEGHLTPVFFGSALRNFGVRDLIDALAAFAPP
                     PRGQGADSRVVDAGEDRMTGFVFKIQANMDPNHRDRIAFLRVCSGKLSRGMKAKLVRT
                     GKSISLNTPQFFFARDRAIADEAWAGDVVGIPNHGTLRIGDTLTEGEDIVFRGVPSFA
                     PEILRRIKLTDAMKAKKLREALQQMAEEGVVQLFVPSDGSAAIVGVVGALQLDVLKER
                     LQAEYGLPIDYETTRFSLCRWIGAADPVELDRFVEAHGSSMARDLDGAPVFMAATAFS
                     LKYEQDRWPAIRFFDVKDYQRRDEAA"
     gene            complement(3882..4382)
                     /locus_tag="VE686_11885"
     CDS             complement(3882..4382)
                     /locus_tag="VE686_11885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009491420.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003697 - single-stranded DNA binding
                     [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded DNA-binding protein"
                     /protein_id="HYY85183.1"
                     /translation="MAGSVNKVILVGNLGKDPEVRRLGSGEPVVNLSLATSESWKDKA
                     TGERKEKTEWHRVVIFNENLARVAEQYLRKGSKVYVEGQLQTRKWQDQSGQEKYSTEV
                     VLQRFRGELTLLDGRGGGASEGEESGQVSRGGEFGRSSPMEKRPAMAGSGNSGRYNDL
                     DDDIPF"
     gene            complement(4601..>4842)
                     /locus_tag="VE686_11890"
     CDS             complement(4601..>4842)
                     /locus_tag="VE686_11890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009492691.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF1236 domain-containing protein"
                     /protein_id="HYY85184.1"
                     /translation="VGGISDAQQPQFRQYVVTQGRPSYRYAEEVRVGATLPSSGVTYY
                     EVPEQYGVRDYRYTIVNDTPVLVDPRSHRVVQIIR"
BASE COUNT          760 a         1637 c         1631 g          814 t
ORIGIN      
        1 cccgccaccg tagccgcgat caccgccgcc gccgccgaag ccgccgcggt cgccgaagcc
       61 gccgggcgcg cgcggcgcct gcggctgggc cgtcgatgtg tcgacgctca tcacctcggt
      121 cacctgcggg cccttctggc cctcggcgac cttgacccgc agcttggtgc ccggatcgag
      181 ggactcgtag cccgcgttgc gcacagcctg catgtgaagg aaagcgtcgc gggtgccgtc
      241 ggagagctcg acgaagccga agcccttcgt gccgttgaac cacttcaccg tggcctcggc
      301 ctcggtccct tccatcgggg cgccgctcgg acgaggccgc gccgggggac gcgagtcgta
      361 ggaggacggg cctctcggtg gtccccggtc ggcaccccag gccggttcgg gaggtggaaa
      421 atcatcgccc ttgcctcggc cgcgatctcg aaagtctttg cctcgtccca tctgtccgct
      481 ctgctgcact gcgcgacgcc gatccaagct tcatgcttgg acccagcgac gggcattctc
      541 attcaaccat gactgttccc ttgcggaaag ccgtccgacc tcgaattctt cgaggcaggg
      601 cggggttccg cgagaagcgc gcgcgagcga acgattctca cgcgtcgctt agcagaggtc
      661 gcatgacctc ataaagcgcg ttcttcgcct cgaagccgat tccggggacg tccggcatgg
      721 cgacccggct gtcgacgacc ggcacctcgt cggcgaagcc gccgaagggc gcgaagacgt
      781 cggggtagga ctcgttgcca ccgagcccga gccctacggc gatgttgagc gcgaactgat
      841 gcccgccgtg cggcacgcag cgccgcggcg accagccgtg ggcgcgcatc atgtcgagcg
      901 tgcgcaggta ttcgacgagg ccgtacgaca gggcaggatc gaactgcagg aagtcgcggt
      961 ccggccgcag gcccccatgc cggatcaggt ttcgggcgtc ctgcatggag aacaggtttt
     1021 cgcccgtagc gagcggcgga cgataggtcg tggcgagggc tgcatgggcg agataatcga
     1081 ggggatcgag gggctcctcg taccacttga cgccgtaagc cgcgatggca ttgccgaagc
     1141 ggatcgcctc ctcgagatcg aaacgcccgt tgacgtcgac gcacaggcgc gagccgtcgc
     1201 caccgaccac gtcgagcgcc gcctcgatgc gcgccagatc ctcatcgagg gggacgaggc
     1261 cgaccttcat cttcacggtc gagtagcccc gatcgaggta cgaccgcatc tcgtcctgca
     1321 ggtcctcgag acccttgccg gggtagtagt agccgcccgc ggcgtagacc caggcggtcg
     1381 cgtctgcctg cccgccgttg tagcggtccg cgagcaggcg ccacagcggc accccatgcg
     1441 ccttggcgag cgcgtcccag agcgccatgt cgagaacgcc gacggccacc gagcgctcgc
     1501 cgtgcccacc gggcttctcg ttcttcatca tcatgcccca ggccctgtgg ggatcgatga
     1561 agccgtcctc gccctgatag tcttcgggcg tggcagcgag aaggcgcggg atgaagcgct
     1621 cgcgcagcag tccctgcggc gcgtaccgcc cgttcgagtt gaagccgaag ccgacgaccg
     1681 gccgcccgcc gaccatccgg tccgtcacga ccgcgaccac gctcgccgtc atggtcgaga
     1741 agtcgatgta ggcgttggcg atgttcgact tgatcggcgc gacgatgtcg cgaatggcaa
     1801 cgatcttcat gcctgacctc tattctgcgc cggcttcaag cggcctcgtc gcggcgctgg
     1861 tagtccttaa cgtcgaagaa gcggatcgcg ggccagcggt cctgctcgta tttcagcgag
     1921 aaggccgtcg cggccatgaa caccggcgcg ccgtcgaggt cgcgcgccat cgacgagcca
     1981 tgcgcctcga cgaagcgatc gagctcgacg gggtccgccg ccccgatcca gcggcacagg
     2041 gagaaccgcg tcgtctcgta gtcgatcggc agcccgtact cggcctgaag gcgctccttc
     2101 agcacgtcga gctgcagcgc gccgacgacg ccgacgatgg ccgccgagcc gtctgacggc
     2161 acgaagagct gaaccacgcc ctcctcggcc atctgctgca aggcttcgcg cagcttcttc
     2221 gccttcatgg cgtcggtgag cttgatgcgg cgcaggatct cgggcgcgaa gcttggtacc
     2281 ccgcgaaaga cgatgtcctc gccctccgtg agcgtgtcgc cgatgcgcag ggtgccgtgg
     2341 ttcgggatgc cgacgacgtc gcccgcccag gcctcgtcgg cgatggcgcg gtcgcgggcg
     2401 aagaagaact gcggcgtgtt caggctgatc gacttgcccg tgcgcacgag cttcgccttc
     2461 atgccgcgcg acagcttgcc cgagcacacg cgcaggaagg cgatgcggtc gcggtggttc
     2521 gggtccatgt tcgcctggat cttgaacacg aaccccgtca tccggtcctc gccggcgtcg
     2581 acgacgcggc tgtcggcccc ctgcccgcgc ggcggcggcg cgaacgcggc aagcgcgtcg
     2641 atgaggtcgc ggacaccgaa gttccggagc gccgagccga agaacaccgg cgtgagatgg
     2701 ccttcgagga acggctgcag cgcgaacggc ttgcaggcct cctgcgccag cgcgacctcg
     2761 tcgcgccagg ccgcgacctc ctcgggcggg agcagatcgt cgatgagggg gtcctcggga
     2821 ccggacaccg gcgtcggctc ctcgtcggcg tcgaggcggc gcaccacgtt ccggcgcagg
     2881 tcgaaggtgc cggcgaagct gcggccacgg ccgatgggcc aggtcaccgg ggccgtgtcg
     2941 agggcgagtg tcttctcgat ctcgtcgagc aggtcgaagg ggtcgcgggt ctcgcggtcc
     3001 atcttgttga tgaacgtgac gatcgggatg tcacgcaggc gacagacctc gaacagcttg
     3061 cgggtgcgcg cctcgatgcc cttggcggcg tcgatgacca tgacggccga gtcgacggcg
     3121 gtcagcgtgc gatacgtgtc ctccgagaag tcctcgtggc ccggcgtatc gaggagattg
     3181 aagacgcagt cgccgtactc gaaggtcatc accgaggtga cgaccgagat gccgcgctcg
     3241 cgctcgatcc ccatccaatc cgagcgggtg gagacgcggt tcttcttggc cttgacctcc
     3301 ccggcaagct ggatcgcgcc cccgaagaga aggagctttt cggtcagcgt cgtcttgccc
     3361 gcgtcggggt gcgagatgat ggcaaacgtc cggcgtcggg cgatgggatc gccgtcgccg
     3421 gggtgggtgt tcgatgtcat tgaggtcagg agttcaaacc ggggccgagg gagggtcgcg
     3481 tctcggcatg cgtctcgccg agatcgtgca ttccgtcccg gaacgcaagc ccgccggtcg
     3541 catccgctat gcgggaggtg tcagcagacc gcttcgtcgt gcttgttttg aatgaaagcg
     3601 gccgcgaacg cacgccaatc cgcagacgag cggccgaatg tcgccggttc ggccctggta
     3661 cggacgtgcc ccgcgcccat atagtgccct cccgaccaca aacgaaagga ggtgatccag
     3721 tgtctcattg tcactcggct cgcctcgctg gagacgcggc gtaagcccgt aaggctttgt
     3781 tgtccgcgct ccggtgcgga accagcgaga gcaatgttgg aggcacgccg ggccgaggtc
     3841 tggcgtgcct ctttcgtttg agtagctcgg ctaacgccct tctagaacgg gatgtcgtcg
     3901 tcgagatcgt tgtagcggcc ggaattcccc gagcccgcca tggcggggcg cttctccatg
     3961 ggcgaggagc ggccgaactc gcccccgcgc gacacctgtc cggactcctc gccctcggag
     4021 gcgccgccgc cgcgaccgtc aaggagcgtg agctcgccgc ggaagcgctg cagcaccacc
     4081 tcggtcgagt acttctcctg gcccgactgg tcctgccact tgcgggtctg aagctggccc
     4141 tcgacgtaga ccttcgagcc cttgcgcagg tactgctccg cgacccgggc gaggttctcg
     4201 ttgaagatca cgacccggtg ccactcggtc ttttccttgc gctcgccggt ggccttgtcc
     4261 ttccagctct cggaggtcgc caggctcagg ttgaccaccg gctcgcccga gccgagccgc
     4321 cgcacctcgg gatccttgcc cagattgccg acgaggatga ccttgttgac gctgcccgcc
     4381 atcggacctt ctccttagtt cttaagctct cgttctgggc cgctgccggc cgcagcacaa
     4441 cgaaggcgcc gccgtttctc cccagctatc gacgacttct caacagtctg gagacaccgg
     4501 ccgtcgttct agctttgttc cgaccacgaa tcaagcccgg cgcaaccgaa agctccgccc
     4561 ggacgagccg gacggagcca ggggtaagcc gcctgagcgc ttagcggatg atctgcacca
     4621 ccctgtggct gcgcgggtcg accagcacgg gcgtgtcgtt cacgatggtg tagcggtagt
     4681 cgcgcacgcc gtactgctca ggcacctcat aataggtgac gccgctcgag ggcagcgtcg
     4741 cgccgacccg gacttcctct gcatagcggt acgagggccg gccctgggtt acgacgtact
     4801 ggcggaactg cggctgctgc gcgtcggaga tgccgccgac ga
//
LOCUS       DASQWN010000633         4717 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_161636, whole genome shotgun sequence.
ACCESSION   DASQWN010000633 DASQWN010000000
VERSION     DASQWN010000633.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 4717)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4717)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4717
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_161636"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..594)
                     /locus_tag="VE686_11895"
     CDS             complement(<1..594)
                     /locus_tag="VE686_11895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018271457.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HYY85185.1"
                     /translation="MKLFDLSGRVALVTGGNGGIGLGMAKGFADAGATVAIAGRNAAK
                     AEKALETIGSRAIFVEVDVTDAESCRAMVARTVERLGRLDILVNNAGVANRKRPELFS
                     PDEWHAVLDANLSGAFFASQAAYFEMKRGGGGKMINIGSMMSIFGAAFAGAYAASKGG
                     IVQLTKALAASWAPDNIQVNAVLPGWIETELTQQAQRD"
     gene            complement(594..2207)
                     /locus_tag="VE686_11900"
     CDS             complement(594..2207)
                     /locus_tag="VE686_11900"
                     /EC_number="1.1.99.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016846199.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016614 - oxidoreductase activity, acting
                     on CH-OH group of donors [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="choline dehydrogenase"
                     /protein_id="HYY85186.1"
                     /translation="MSHSDRAPDEADFVIVGAGSAGCVLANRLTESGRYRVVLLEAGP
                     RDRHLWIHIPLGYGRLFKDARVNWLYQSEPEPELNGRVIFQPRGKVLGGSSSINGLVY
                     VRGQPEDFDHWRQLGNAGWGFDDVLPYFRRSEDQARGASDLHGVGGALSVSDATGPHE
                     LCDAFIAAAEQAGVPRNEDFNGPVQEGAGYFQTTSRRGVRWSTARGYLRPALRRPNLQ
                     VVTEAIATRVVFDGRKAVGVEYRRAGETTTVRARREVVLAGGAINSPQLLQLSGVGAG
                     PLLREHGIPVVAESLGVGEDFQDHLQVRMVLKCTKPITINDEISSVMRRLGVGLRYAL
                     WRKGPLTVSAGYAGAFFRTDERVATPDVQVHFITFSTDRMGERLHTFPGFTASVCQLR
                     PESRGFVRIKSPDPAAPPAIQPRYLSTETDRRTNVEGLKRLRAIMDMPAMRPYVLAEH
                     LPGSGVQSDDEILAYCREVGSTIYHPSCSCRMGTDPRAVVDARLRVHGVEGLRVVDGA
                     VMPSVVSGNTNAAIVMIAEKGSDMILEDA"
     gene            2454..2738
                     /locus_tag="VE686_11905"
     CDS             2454..2738
                     /locus_tag="VE686_11905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002711294.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl carrier protein"
                     /protein_id="HYY85187.1"
                     /translation="MSSSTFDRVADIISETADIPRDKITPESHAIDDLGIDSLAFLDI
                     AFAVDKAFGIKLPLEQWTQEVNEGKAPAEEYFVLKNLVARIDDLAAAKKA"
     gene            2752..3213
                     /locus_tag="VE686_11910"
     CDS             2752..3213
                     /locus_tag="VE686_11910"
                     /EC_number="4.2.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017483564.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016836 - hydro-lyase activity [Evidence
                     IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-hydroxyacyl-ACP dehydratase FabZ family
                     protein"
                     /protein_id="HYY85188.1"
                     /translation="MRLEYFEMIDRVVRLDRANKRIEARATVPAESPVFEGHFPGYPL
                     VPGVLLTETMAQASGYLVLALTEFSQMPFLMAVDKARFRSFVGPGVELAIEATLEHQG
                     SGYVATKARIAAFGKPLCDAELRFRTMPFPQGMETSLRDRATAIGLVGEQA"
     gene            3213..4343
                     /locus_tag="VE686_11915"
     CDS             3213..4343
                     /locus_tag="VE686_11915"
                     /EC_number="2.3.1.179"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019904428.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016746 - acyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl-ACP synthase"
                     /protein_id="HYY85189.1"
                     /translation="MRDVVVTGVGIVSCAGEGLDAHLVALRGGATPPLDAETFAPYPV
                     HRAVTLEWDRQIPKKSDQRQMEAWQRLGVYAAGLALDSAGAKDDAALKSRMHMVVAAG
                     GGERDYTVDGQILSGLAKAENKGVFLNERLMNDLRPTLFLAQLSNLLAGNISIVHGIT
                     GGSRTFMGEESSGVDALRVAHGRIASGEVDTVLVGSSYNAERPDVLLICEMGGYLSKG
                     PFRSVWDRPASGGGLILGSAGCSVLLESREHAETRGAKILATFAGAVADRVRRTPGAI
                     GTSLRTFWAGLEVGSDAAVLSGATGVSGITEEERGALRDLAPGAAPRATGDVIGHTME
                     TQALAGFALAAGLIAAGEAPEAVVTSVGHRRGEGMMRLLRGA"
     gene            4359..>4717
                     /locus_tag="VE686_11920"
     CDS             4359..>4717
                     /locus_tag="VE686_11920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009490844.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl synthase N-terminal-like
                     domain-containing protein"
                     /protein_id="HYY85190.1"
                     /translation="MRDSKGRPLVAVTGVGVVTSLGQGQDDNWAGATAGRSGIHAITR
                     FPTEGLRTRIAGTIDFLPVDPLCAPLLSERYAALAAEEAIAQSGAGRPGDFPGALFIA
                     VPPVEMEWTQREALAEAS"
BASE COUNT          709 a         1676 c         1629 g          703 t
ORIGIN      
        1 gtccctctga gcctgctgcg tcagctcggt ctcgatccac ccgggcagga ccgcgttgac
       61 ctggatgttg tcgggcgccc acgaggccgc gagcgccttg gtgagctgga cgatgccgcc
      121 cttgctcgcc gcgtaggcgc ccgcgaaggc ggcgccgaag atcgacatca tggagccgat
      181 gttgatcatc ttgccgccgc ctccccgctt catctcgaag tacgccgcct gagaggcgaa
      241 gaaggcgccc gagaggttgg catcgaggac ggcgtgccac tcgtccgggc tgaacagctc
      301 aggcctcttg cggttggcga cgccggcgtt gttgacgagg atatcgagcc ggccgagccg
      361 ctcgaccgtc cgcgccacca tggcgcggca ggactcggcg tccgtgacgt ccacctcgac
      421 gaagatcgcc ctggacccga tggtctcgag ggccttttcg gccttcgcgg cattgcgccc
      481 cgcgatcgcg accgtcgccc cggcgtccgc gaagcccttc gccatgccga gcccgatgcc
      541 gccgttgccg cccgtgacca gggcgacccg gccggagagg tcgaagagct tcatcacgcg
      601 tcctcgagga tcatatcgga gcccttctcg gcgatcatca cgatcgccgc attggtatta
      661 cccgaaacca cgctcggcat gaccgccccg tcgacgacgc gcaagccctc gacgccgtgc
      721 accctgagcc gcgcatcgac cacggcgcgg ggatccgttc ccatgcggca cgagcagctt
      781 ggatgataga tcgtgctgcc gacctcgcgg caatacgcca agatctcgtc gtccgattgc
      841 acgcctgagc ccggcaggtg ctcggcgagc acgtacggcc gcatggccgg catgtccatg
      901 atggcgcgca ggcgcttcag tccctcgacg ttggtccggc gatcggtctc ggtcgacagg
      961 taccgcggct ggatcgcggg cggcgcggcc ggatcggggc tcttgatccg cacgaagccg
     1021 cggctctcgg ggcggagctg gcagacggac gccgtgaagc ccgggaaggt gtgcagccgc
     1081 tcgcccatgc ggtccgtcga gaatgtgatg aagtggacct gcacatcggg cgtcgcgacg
     1141 cgctcgtcgg tgcggaagaa ggccccggca taacccgcgc tcacggtcag cggccccttg
     1201 cgccatagcg catagcgcaa gccgaccccg agccgccgca tcacggagct gatctcgtcg
     1261 ttgatcgtga tgggcttcgt gcacttgagc accatccgca cctgcagatg gtcctggaag
     1321 tcctcgccga cgccgaggct ttcggcgacg accgggatgc cgtgctcccg cagcagcggg
     1381 cctgcgccga ccccggagag ctggagaagc tgcggcgagt tgatggcgcc cccggccagc
     1441 acgacctcgc gccgcgcccg caccgtcgtg gtctcgccgg cgcgccggta ctcgacgccg
     1501 acggccttgc gaccgtcgaa gacgacgcgc gtcgcgatgg cctccgtcac gacctggagg
     1561 ttcggccgcc tgagcgccgg gcggagatag ccccgggcgg tgctccaccg gacgccgcgg
     1621 cgcgaggtcg tctggaagta gccggccccc tcctggaccg gaccattaaa atcctcgttc
     1681 cgcggcacgc ccgcctgttc ggccgccgcg atgaaggcgt cgcacagctc gtgcggcccc
     1741 gtcgcgtccg agaccgacag ggccccgccg acgccgtgga ggtcactcgc gccgcgcgcc
     1801 tggtcttcgc tacgccggaa gtacggcagc acgtcatcga agccccagcc ggcgttgccg
     1861 agctggcgcc agtggtcgaa gtcctccggc tggccgcgga cgtagacgag gccgttgatg
     1921 gacgacgagc cgccgagcac cttgccgcgc ggctggaaga tgacgcggcc gttgagttcc
     1981 ggctccggct cgctctgata cagccagttg acgcgggcat ccttgaacag gcggccgtag
     2041 ccgagcggta tgtggatcca caggtggcgg tcccgcgggc cggcctcgag gagcacgacg
     2101 cgataccggc ccgactcggt caggcggttg gcgaggacgc agccggccga tcccgcgccc
     2161 acgatgacga aatccgcttc gtccggcgct cgatcggagt ggctcatcag gtatcaggct
     2221 cgggctggcg gcgcgcctct cggcgcgcct gcaccaatgt ccgtgcgggc gcgccgcggc
     2281 gtcaagccgt gccagggcga cagcgccccg ggcgcgccct tgcggtgcag tctacgcttg
     2341 actccggcac ccgcaccggg cagcgagcct acgagcgccc ggaagggaat cgcgcccgct
     2401 cgccgggccg gccacgtgcg ccggcacctt gagcgctttt ggagacgaga cggatgtcgt
     2461 ccagtacctt cgacagagtg gccgatatca tctcggagac ggccgacatc ccgcgcgaca
     2521 agatcacgcc ggagagccac gccatcgacg accttggcat cgactccctc gccttcctgg
     2581 acatcgcctt cgcggtcgac aaggccttcg gcatcaagct gccgctcgag cagtggacgc
     2641 aggaggtcaa cgagggcaag gctccggccg aggaatactt cgtgctcaag aacctcgtcg
     2701 cccgcatcga cgacctcgcc gccgccaaga aggcgtgacc gcctcgcccg catgcgcctt
     2761 gaatacttcg agatgatcga ccgcgtggtc cgcctggacc gcgccaacaa gcggatcgag
     2821 gcgcgcgcca cagtccctgc cgaaagcccc gtgttcgagg gccattttcc cggctatccg
     2881 ctcgtgccgg gcgtcctcct gaccgagacc atggcacagg cttcggggta cctcgtcctg
     2941 gcgctcacgg aattcagcca gatgcctttc ctcatggccg tcgacaaggc ccggttccgc
     3001 agcttcgtcg gcccaggcgt cgagctcgcg atcgaggcga ccctcgagca tcagggctcc
     3061 ggctacgtcg ccaccaaggc gaggatcgcg gcgttcggca agccgctctg cgatgccgag
     3121 ctccgcttca ggaccatgcc gttcccgcaa gggatggaga cgtccctgcg cgatcgcgcg
     3181 accgccatcg ggctcgtcgg agagcaagcc tgatgcgcga cgtcgtcgtc accggggtcg
     3241 gcatcgtgtc ctgcgcgggc gaggggctcg acgcgcatct tgtggcgctg cgcggcgggg
     3301 cgacgccgcc gctcgacgcc gagaccttcg cgccctaccc ggtccaccgc gccgtcacgc
     3361 tcgagtggga ccggcagatt ccgaagaaat ccgaccagcg ccagatggag gcgtggcagc
     3421 ggctcggcgt ctacgccgcc ggcctcgccc tcgactcagc cggcgcgaag gacgacgcag
     3481 ctctcaagag ccgcatgcac atggttgtcg cggcgggggg cggcgagcgc gattacaccg
     3541 tcgacgggca gatcctctcc gggcttgcca aggccgagaa caagggcgtg ttcctgaacg
     3601 agcggctgat gaacgacctg cgcccgacac tctttctcgc gcagctgtcg aacctgctgg
     3661 ccggcaacat ctcgatcgtg catggcatca ccggaggctc gcgcaccttc atgggcgagg
     3721 agtcgagcgg cgtcgacgcc ctgcgggtcg cccatggccg catcgcctcc ggcgaggtcg
     3781 acacggttct cgtcgggtcg agctacaacg ccgaacgtcc cgacgtcctc ctcatctgcg
     3841 agatgggtgg atacctctcg aaaggcccgt tccggagcgt gtgggatcgc ccggcgagcg
     3901 gcggcgggct catccttgga agcgcgggtt gctccgtgct gctcgagtcg cgggagcatg
     3961 cggagacccg cggcgccaag atcctggcga ccttcgcggg ggctgtggcg gaccgcgtcc
     4021 gacgcacgcc gggcgccatc gggacttcgc tccgcacgtt ctgggccggg ctcgaggtcg
     4081 gcagcgacgc cgccgtgctc tcgggcgcca ccggcgtgtc gggcatcacc gaggaggaac
     4141 ggggcgcgct ccgcgacctt gcgccagggg cggcgccccg agcgacgggc gacgtcatcg
     4201 gacacacgat ggagacgcaa gcgctcgccg ggttcgccct tgcggccggc ctcatcgcgg
     4261 ccggcgaggc gcccgaggcg gttgtgacgt ccgtcggaca ccggcgcggc gagggcatga
     4321 tgcgcctcct ccggggcgcg taagaaagga atcggccgat gcgcgattcg aaggggcgcc
     4381 ccctggtggc ggtcacaggc gtcggcgtcg tgacctccct cgggcagggc caggacgaca
     4441 attgggcggg cgcaacggcc gggcgatccg gcatccacgc catcacgcgc tttccgaccg
     4501 aagggctgcg caccaggatc gccggcacga tcgacttcct gccggtcgat cccttgtgcg
     4561 cgccgctgct gtccgagcgc tacgccgccc tggcggccga ggaggcgatc gcgcagtcgg
     4621 gagccgggcg tcccggcgat ttcccgggcg cgctcttcat cgccgtgcct ccggtcgaga
     4681 tggaatggac ccagcgcgag gcgctcgccg aagcctc
//
LOCUS       DASQWN010000634         2011 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_872757, whole genome shotgun sequence.
ACCESSION   DASQWN010000634 DASQWN010000000
VERSION     DASQWN010000634.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2011)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2011)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2011
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_872757"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            148..609
                     /locus_tag="VE686_11925"
     CDS             148..609
                     /locus_tag="VE686_11925"
                     /EC_number="3.5.4.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019401723.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_function: GO:0052717 - tRNA-specific adenosine-34
                     deaminase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside deaminase"
                     /protein_id="HYY85191.1"
                     /translation="MDNAVEGKSDPMARALQEAQAAADRGEVPVGAVVVRDGAILAAA
                     GNSPRAAHDPTAHAEMLAIRAACAALGDERLSGCDLYVTLEPCTMCAAAISFARVRRL
                     YFGALDPKGGAVESGVRFFAQATCHHAPEIYGGLREGEAAALLRAFFKPRR"
     gene            746..>2011
                     /locus_tag="VE686_11930"
     CDS             746..>2011
                     /locus_tag="VE686_11930"
                     /EC_number="2.7.7.65"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020176856.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diguanylate cyclase"
                     /protein_id="HYY85192.1"
                     /translation="MLSTIRGKFAAVLFVGLGLVCAGAFGLSSGQQAGADAVFGEPAL
                     FVGMLTLVVMLLIERIVIQPISGLTRGVVSLANGDPGDPRNRLQVKGSDEVATLARTF
                     NGLLEHLAARQKLEAQLTHMAHHDGLTALPNRVLFRQEMERELARARRGEAVAVLCID
                     LDHFKRVNDTLGHAAGDALLQGAADRLRACVRETDIIARLGGDEFAIVQVQAEQPRAA
                     TVLAERLIADLSRPFDIDGHQVVVGASVGVAFAPSDGTEADQLMKSADMALYRAKADG
                     RGVLRYFESEMDAKMQARRALELDLRKALVEHEFELFYQPIVDLKSNRVSGFEALLRW
                     NHPSQGLISPADFIPIAEDMGLIIPLGEWVLRQACKEAAGWPERVKVAVNLSPAQFKS
                     KALALVVTTALADSGLAPDRLELEITESVL"
BASE COUNT          288 a          700 c          700 g          323 t
ORIGIN      
        1 gcggtcgtgc cgtggcggcc gcttggggcc gccgtgtaga cggcggccgt ccgggcggcc
       61 gggcgcgcgt ccgccatcgt tctcatcggt ggtgtcggtc atggccgcct gataccagag
      121 cgctcggggt gaagcgaggg ctcgccgatg gacaacgccg tcgaaggaaa gtccgatccg
      181 atggcgcgcg cgctccagga agcccaggcc gccgcggatc ggggtgaggt gccggtcggc
      241 gccgtggtcg tgcgcgacgg agccatcctg gcagccgccg gcaacagccc gcgcgcggcg
      301 cacgacccga ccgcgcatgc cgagatgctg gcgatccgcg cggcgtgcgc agccctcggc
      361 gacgagcgcc tctcgggctg cgacctctac gtcaccctcg agccgtgcac catgtgcgcg
      421 gcggccatct cgttcgcgcg ggtgcggcgc ctctacttcg gcgccctcga ccccaagggc
      481 ggcgcggtcg agagcggcgt gcggttcttc gcccaggcga cctgccacca tgcgcccgag
      541 atctatggcg gtctgcgcga gggcgaggca gccgcgctcc tacgggcgtt cttcaagccg
      601 cgtcgctgaa gcgggcccgc gcccggattt atcggtccgg cggcggcaaa catttaacca
      661 ctccccttag gcccgcgttt gcagctttcg gtgttccttg gggttcggtt cgctccggac
      721 atgcggaccg ggtcacgagg tccgcatgct cagcacaatt cgcggcaaat tcgccgcagt
      781 cctcttcgtc ggcctagggc tcgtatgcgc cggtgccttc gggctcagct ccggccagca
      841 ggcgggtgcg gacgcggtgt tcggcgagcc tgcgctcttc gtcggcatgc tgaccctcgt
      901 ggtcatgctg ctcatcgagc gcatcgtcat ccagccgatc agcgggctca cccgcggcgt
      961 cgtctcgctc gcgaacggcg accccggcga tccccgcaac cgtcttcagg tcaagggctc
     1021 ggacgaggtc gcgacgcttg cccgcacttt caatgggctc ctggagcacc tcgcggcgcg
     1081 ccagaagctc gaggctcagc taacccacat ggcccatcat gacggcctga cggcgctgcc
     1141 gaaccgggtc ctgttccggc aggagatgga acgcgagctc gcccgcgccc ggcgcggcga
     1201 ggcggtcgcg gtgctgtgca tcgatctcga ccacttcaag cgcgtaaacg acaccttggg
     1261 ccatgccgcg ggtgacgcgc tgctgcaggg ggcggcggac cgcctgcgcg cttgcgtgcg
     1321 cgaaaccgac atcatcgcgc gcctcggagg cgacgagttc gcgatcgtcc aagtgcaagc
     1381 cgagcagccg cgtgctgcga cggtccttgc cgagcgcctg atcgccgacc tgtcgcgacc
     1441 gttcgacatt gacggacatc aggttgtcgt cggcgccagc gtcggcgtcg cgttcgcgcc
     1501 gtcggacggc accgaggcgg accagctcat gaagagcgcc gacatggccc tctaccgcgc
     1561 caaggcggac ggccggggcg tcctgcgcta cttcgaatcc gagatggacg ccaagatgca
     1621 ggcccggcgc gccctcgagc tggacttgcg caaggcgctc gtggagcacg agttcgagct
     1681 gttctaccag cccatcgtcg atcttaagtc gaaccgggtc agcggcttcg aggcgctgct
     1741 acgctggaac cacccgagcc aaggcctgat ctcgccggcc gacttcatcc cgatcgcgga
     1801 ggacatgggc ctcatcatcc cgcttggcga atgggtgttg agacaggcgt gcaaggaggc
     1861 ggcgggatgg cccgagcggg tcaaggtcgc cgtcaacctg tcgccggcgc agttcaagag
     1921 caaggcgctc gcgctcgtcg tcacgacggc gcttgcggac tcgggccttg ctcccgatcg
     1981 gctcgagctc gagatcaccg agagcgtcct c
//
LOCUS       DASQWN010000635         2795 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_274043, whole genome shotgun sequence.
ACCESSION   DASQWN010000635 DASQWN010000000
VERSION     DASQWN010000635.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2795)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2795)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2795
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_274043"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1113
                     /gene="glp"
                     /locus_tag="VE686_11935"
     CDS             <1..1113
                     /gene="glp"
                     /locus_tag="VE686_11935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006019902.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:1990586 - divisome complex [Evidence
                     IEA];
                     GO_function: GO:0061599 - molybdopterin molybdotransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006777 - Mo-molybdopterin cofactor
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="gephyrin-like molybdotransferase Glp"
                     /protein_id="HYY85193.1"
                     /translation="SDLTSPLPLPPFDNSAVDGYAVRFDDLAQNGETRLPVGGRLAAG
                     AAAALNGAAGSAVRIFTGAPMPPGFDTVFMQEDVRADGASVVLPSGLQRGANRRVAGE
                     DLAAHGVALRAGRRLSPAEIALVAALGLADVRVRRRLRVGVFSTGDEVVEPGRPLGPA
                     KLYDANRFMLLALLGRIGCAAADLGILPDEPGELSRALAAAGAGHDLLITSGGVSTGE
                     EDHVKAAVEAAGALTFWRVGIKPGRPVAMGVVRGAAFIGLPGNPVAAFVTFVQLARPL
                     IARLAGEDFQPPPAVPVRSGFAYRKKEGRREYVRVRLEREGDGSLVAHKHPREGAGVI
                     TSLTETHGLVELPEELTRLAAGDSVGFLPYAALIGP"
     gene            complement(1359..1559)
                     /locus_tag="VE686_11940"
     CDS             complement(1359..1559)
                     /locus_tag="VE686_11940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018044798.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY85194.1"
                     /translation="MLLSVVVALVLAVGASYVLSTQQRPAYQAYVGSGASVGDPGENL
                     VGRNWNGMNAGDNLAHPHGGKG"
     gene            complement(1634..2269)
                     /gene="mobA"
                     /locus_tag="VE686_11945"
     CDS             complement(1634..2269)
                     /gene="mobA"
                     /locus_tag="VE686_11945"
                     /EC_number="2.7.7.77"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018317010.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_function: GO:0061603 - molybdenum cofactor
                     guanylyltransferase activity [Evidence IEA];
                     GO_process: GO:0006777 - Mo-molybdopterin cofactor
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum cofactor guanylyltransferase MobA"
                     /protein_id="HYY85195.1"
                     /translation="MESRDVTPTLGVLLAGGLARRMGGGDKPLRTIAGRTILERAIAR
                     LRPQCDGLIVNANGDPARFAGTGLTVVPDDVPDFAGPLAGILASLDWAAEHRPDLVYV
                     ASAAADTPFLPHDFVSRLRAAREAAGVPLACAESGGRAHPVNGLWPVSLRLDLRHALV
                     EEGMRKIDRWTARHGVALATWATEPVDPFFNANAPEDLAEAERLVALHGDL"
     gene            complement(2346..>2795)
                     /locus_tag="VE686_11950"
     CDS             complement(2346..>2795)
                     /locus_tag="VE686_11950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018643988.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate dehydrogenase accessory
                     sulfurtransferase FdhD"
                     /protein_id="HYY85196.1"
                     /translation="LYRLSHAINTTPSLYLEAGAIHGCVLAREDRPLVYMEDVGRHNA
                     VDKIAGWMFRQGEGGGDKIFYTTGRLTSEMVLKTVRMGIPILVSRSGFTAWGVELARQ
                     VGLTLIGRARGKRFLALSGEDRIVFDQDLAYVEEESAKHRRKGAGDE"
BASE COUNT          371 a         1018 c          995 g          411 t
ORIGIN      
        1 tcggacctca cgagtccgct gcccctgccg cccttcgaca actcggcggt cgacggctac
       61 gcggtgcgtt tcgacgacct tgcccagaac ggcgagaccc ggctgcccgt cggggggcgg
      121 cttgccgccg gagcagcggc agccctgaac ggcgccgccg gctcagcggt ccgcatcttc
      181 acgggcgcgc ccatgccgcc agggttcgac acggtattca tgcaggagga cgtgcgagcc
      241 gacggcgctt ccgtcgtgct gccttcgggc ctccagcgcg gggcgaatcg acgcgtggcg
      301 ggcgaggatc tggccgccca cggcgttgcc ctcagggctg ggcgccgtct ctcgcccgcc
      361 gagatcgcgc tcgtcgctgc gctcgggctg gccgacgtga gggtccgccg caggctgcgc
      421 gtcggcgtgt tctcgaccgg cgacgaggtc gtcgagcccg gtcgcccgct cgggcccgcg
      481 aagctctacg acgccaaccg cttcatgctc ctggcgcttc tcgggcggat cgggtgtgcc
      541 gccgccgatc tcggcatcct gccggacgag cccggcgagc tctcccgcgc cctcgccgcc
      601 gcgggcgcgg ggcacgacct gctgatcacg tccggcggcg tgtcgacggg cgaggaggac
      661 cacgtcaagg cggccgtgga ggccgcaggg gccctgacgt tctggcgcgt cggcatcaag
      721 ccgggccgtc cggtcgccat gggcgtggtg cgcggcgccg ccttcatcgg cctgccggga
      781 aacccggtcg ccgccttcgt gaccttcgtc cagctcgcgc ggccgctgat cgcgcgcctc
      841 gccggggagg acttccagcc gccgcccgcc gtgcccgtcc gctccggctt cgcctatcgc
      901 aagaaggagg gacggcgcga atacgtgcgg gtgcgcctcg agcgcgaggg cgacggctcc
      961 ctcgtcgccc acaagcaccc gcgcgagggt gcgggcgtga tcacctcgct gaccgagacg
     1021 cacggactcg tcgaactccc cgaagagctg acgcggctcg cggccggcga cagcgtcggg
     1081 ttcctgccct acgccgccct gatcgggccc tagggcagcc gtccggcgtg gctcagcccc
     1141 gtccaccctc gtggcggagg cagaccggcc cgaagcggga ggcctcggga cctcggtccg
     1201 cgttcccgtc gaggggcgag gggtgcgacg cgcccgagcc ccgggatgtc atccgccagc
     1261 gccgctcgtc gtcgtcatct tcccggattt gtccgcgccc tcgtcggcgt ttatccggca
     1321 tcgtcgccgg ataagtcgtc gttcgaggcc gcgcgggcct acccctttcc gccgtgggga
     1381 tgggcgaggt tgtcgccggc gttcatgccg ttccagttcc ggccgacgag gttctcgccc
     1441 gggtcgccga cgctcgcgcc ggagccgaca taggcctggt aggccggccg ctgctgagtc
     1501 gagagcacgt agctcgcccc caccgcgagc acgagggcca ccaccacgct caaaagcatc
     1561 actttcacgg cttccccccc tgtcccggtc ctctctgtcc agttgagcaa aaaaaccgtg
     1621 gtgtttcaat cactcacagg tcgccgtgca gggcgacgag ccgctcggcc tcggcgaggt
     1681 cctccggcgc gttggcgttg aagaacgggt ccaccggctc ggtcgcccag gtggcgaggg
     1741 cgacgccgtg ccgggccgtc cagcggtcga tcttgcgcat gccttcctcg accagcgcgt
     1801 ggcgcagatc cagtctgaga gacaccggcc acaggccgtt caccgggtgg gcacgccccc
     1861 ccgattcggc gcaggcgagg gggacgcccg cggcctcccg cgccgcgcgg aggcgcgaga
     1921 cgaagtcgtg cggcaggaag ggcgtgtcgg cggcggcgct cgccacgtac acgaggtcgg
     1981 gccggtgctc ggccgcccag tcgagggacg cgagaatgcc ggcgaggggc ccggcgaagt
     2041 ccgggacgtc gtcggggacg acggtcagcc cggtcccagc gaaccgggcc ggatcgccgt
     2101 tggcattgac gatgagcccg tcgcattgcg gccggaggcg ggcgatagca cgctcgagga
     2161 tggtgcgccc ggcgatggtg cgcagaggct tgtcgccacc ccccatccgc cgcgccagcc
     2221 cgccggcgag cagcactccg agagtggggg tcacgtcccg agactccatg tcaagcgcgg
     2281 cacgaacccc tctccccaac ggggagaggg gttccgccgg cacctcaatc gtcggaggag
     2341 gcgccctatt catccccggc gcccttgcgg cggtgctttg ccgattcttc ctccacgtag
     2401 gccaggtcct ggtcgaagac gatgcggtcc tcgcccgaga gggccaggaa gcgcttgccg
     2461 cgcgcccggc cgatgagcgt caggccgact tggcgggcga gctcgacgcc ccaggcggtg
     2521 aagcccgagc gcgagaccag gatcgggatg cccatccgca cggtcttcag caccatctcg
     2581 gaggtgaggc gccccgtcgt gtagaagatc ttgtcgccgc cgccctctcc ttgccggaac
     2641 atccagccgg cgatcttgtc gacggcgttg tggcggccga catcctccat gtagacgagc
     2701 ggccggtcct cgcgcgccag cacgcagcca tggatcgcac cggcctcaag atacagggat
     2761 ggcgtcgtgt tgatagcgtg gctcagccga tacag
//
LOCUS       DASQWN010000636         2927 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_972544, whole genome shotgun sequence.
ACCESSION   DASQWN010000636 DASQWN010000000
VERSION     DASQWN010000636.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2927)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2927)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2927
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_972544"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..315)
                     /locus_tag="VE686_11955"
     CDS             complement(<1..315)
                     /locus_tag="VE686_11955"
                     /inference="COORDINATES: protein motif:HMM:NF012514.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX domain-containing protein"
                     /protein_id="HYY85197.1"
                     /translation="MNIAEADGKEFIARAVERLRRDPPTIDQPRSDPKGDHSHDFANE
                     PEIAPGSAKPAAVLVPVVLRPTETSLLFTQRATGLRSHAGQISFPGGRIDEGDGSAVE
                     AAL"
     gene            complement(312..923)
                     /locus_tag="VE686_11960"
     CDS             complement(312..923)
                     /locus_tag="VE686_11960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012453373.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1285 domain-containing protein"
                     /protein_id="HYY85198.1"
                     /translation="MPQPLPEASSTPAADPLARLASCLEGGGRAKGVPPVERWNPPYG
                     GEIDMRIAADGTWFYKGSAIARPALVKLFSSVLRRDPERFVLVTPVERLGIAVEDAPF
                     LAVEMAVEGEGDTRRIAFRTNVDDLVAVGPDHPVRFNRGEQDAMKPYVLVRGGLWARL
                     TRALTYDLLELGEEREVGGTVLFGVAAASQFFPVAPASEIAGL"
     gene            1112..2122
                     /locus_tag="VE686_11965"
     CDS             1112..2122
                     /locus_tag="VE686_11965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019400318.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MoxR family ATPase"
                     /protein_id="HYY85199.1"
                     /translation="MTAGIAQTPTALDDGIVRNAEATLESIGRARDAIHAVIFGQEKV
                     VDLSLITILASGHGLLVGVPGLAKTKLVETLGTVLGLDARRVQFTPDLMPSDILGAEV
                     LDEGADRRRSFRFVKGPIFAQLLMADEINRASPRTQSALLQAMQEHHVSVAGERYDLP
                     RPFHVLATQNPIEQEGTYPLPEAQLDRFLLQIDVGYPDRDAERRILIETTGSEEHRPV
                     AVMAPEALMNAQRLVRRLPVGDSVVEAILDLVRTARPGEGSRDLTDKLMWGPGPRASQ
                     ALMLAVRARALIEGRIAPSLADVAALAEPVLKHRMALTFSARADGETIPDLIRRLTAP
                     LG"
     gene            2134..>2927
                     /locus_tag="VE686_11970"
     CDS             2134..>2927
                     /locus_tag="VE686_11970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015822087.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF58 domain-containing protein"
                     /protein_id="HYY85200.1"
                     /translation="MARVRVLPVEARSPGRRESDAAYDVAARMPRLVLEARRVAATLT
                     HGVHGRRRAGPGETFWQFRPFVAGEAAQRIDWRRSARDDRLYVREREWEAAHSIWMWV
                     DRSASMGFASDLAQAPKIERGLVLGLALADTFVEAGERVGLLGLMPARATRNISARIA
                     QALIADRAALDEDLPPRAPVGRLDDVLLIGDFLSPLSDVRAVIEGISARGARGHLLMI
                     VDPVEETFPFAGQAVLHDVEDGIRLRVGDAASWGESYRGRIAQHRDA"
BASE COUNT          420 a         1053 c         1022 g          432 t
ORIGIN      
        1 caatgccgcc tccacggccg agccatcccc ctcgtcgatc cgcccccccg ggaacgagat
       61 ctggcccgcg tggctgcgca ggccggtcgc acgctgggtg aagaggaggc tggtctccgt
      121 cgggcgcagc acgacgggga ccaggacggc cgccggcttc gccgagcccg gcgcaatctc
      181 gggctcattg gcgaaatcgt gcgaatggtc gcctttcggg tcagagcgcg gctggtcgat
      241 ggtcggggga tcgcgccgaa ggcgctcgac ggcgcgggcg ataaactcct tcccgtcggc
      301 ttcggcgatg ttcataagcc ggcgatctcg gaggcgggag ccacggggaa gaactggctt
      361 gcagccgcca cgccgaacag cactgtcccg ccgacctccc gttcctcgcc aagctcgagc
      421 aggtcgtagg tgagcgcccg ggtgagccgg gcccaaaggc cgccgcgcac caggacgtag
      481 ggcttcatgg cgtcctgttc gccacggttg aagcgcacgg gatgatcggg cccgacggcg
      541 acgaggtcgt cgacgttggt ccgaaaggcg atgcggcgcg tatcgccctc cccttcgacc
      601 gccatctcga cggcgagaaa gggcgcgtcc tccacggcga tgccgagccg ctcaaccggc
      661 gtcacgagca cgaaacgctc gggatcgcgg cgcaggacgg aggaaaacag cttcacgagc
      721 gccggccgcg cgatggccga gcccttgtag aaccaggtcc cgtccgcagc gatgcgcatg
      781 tcgatctcgc cgccgtacgg cggattccag cgctcgaccg gcggcacgcc cttggctctc
      841 ccgccgcctt cgaggcaaga ggcgagacgg gccagcggat cggcggcggg cgtagaggac
      901 gcttcgggca atggctgcgg catcgcgaca cgacaaggca cgggggttgg catgagcttc
      961 gccgcgctcc cgcggttcct aggggcggcc cttatccgcc agggattgcg gggcgtccag
     1021 gtgtcgcgcg gggagcggcg ctgttgcggc cgaggtcgat cggccccaca gtatcgcagg
     1081 gcgtgggctt aagcggacgt gaggagactg catgacggcc ggcatcgctc agaccccaac
     1141 cgcgctcgac gacggcatcg tcaggaacgc cgaagcgacg ctcgagtcca tcggccgcgc
     1201 gcgcgacgcc atccatgctg tgattttcgg ccaggaaaag gtcgtcgacc tgtcgctcat
     1261 caccatcctg gcgagcgggc atggcctcct cgtcggcgtg ccgggactgg ctaagaccaa
     1321 gctcgtcgag accctcggca ccgtgctcgg cctcgatgcc cgccgcgtcc agttcacgcc
     1381 cgacctgatg ccgtccgaca tcctcggcgc cgaggtcctc gacgagggcg ctgaccggcg
     1441 ccgctccttc cgcttcgtca aagggccgat ttttgcccaa ctgctgatgg cggacgagat
     1501 caaccgcgcg agcccgcgca cgcagtccgc gctgctccag gccatgcagg agcatcatgt
     1561 ttcggtggcc ggcgagcgtt acgacctgcc gcgcccgttc catgtgctcg cgacgcagaa
     1621 cccgatcgag caggagggca cctaccccct gccggaagcg cagctcgacc gtttcctgct
     1681 gcagatcgac gtcggctacc ccgatcggga tgccgagcgt cgaatcctca tcgagaccac
     1741 tgggtccgag gagcatcgcc ccgtcgccgt catggcgccg gaggcgttga tgaacgcgca
     1801 gcgcctcgtg cggcggctgc cggttggcga cagcgtcgtc gaggcgatcc tggatctggt
     1861 gcgcaccgcg cgccctggcg aaggcagccg cgacctcact gacaagctga tgtgggggcc
     1921 cggaccacgg gcgagccagg cccttatgct cgccgtgcgg gcgcgcgcac tcatcgaggg
     1981 ccgcatcgcg ccctcgctgg ccgacgtcgc ggcgcttgcc gagcccgtcc tcaagcaccg
     2041 catggcgctc accttctcgg cccgggcgga cggcgagacc attccggatc tgatccgccg
     2101 cctcacggca cccctgggct gaaaggcacg cccatggccc gggtccgggt ccttcctgtc
     2161 gaggcgcgct cgcccggacg gcgggagagc gacgctgcct acgatgtcgc cgcgcgcatg
     2221 ccgcggcttg tcctcgaggc gcgtcgcgtg gccgccaccc tgacgcacgg cgtccacggg
     2281 cgccggcgcg ccggccccgg cgagaccttc tggcagttcc gccccttcgt cgccggcgag
     2341 gcggcgcagc gcatcgactg gcgccgttcc gcccgcgacg accggctcta cgtgcgcgag
     2401 cgcgagtggg aggcggccca ctcgatctgg atgtgggtgg accgctcagc ctccatgggg
     2461 tttgcctccg atctggcgca ggcgccgaag atcgagcgcg gcctcgtgct cggcctcgct
     2521 ctcgccgaca ccttcgtgga ggcgggcgag cgggtcgggc tgctcgggct catgccggcc
     2581 cgggcgacgc gcaacatctc cgcccgcatc gcgcaggctc tgattgcgga ccgcgcggcg
     2641 ctcgacgagg acctccctcc ccgcgcgccg gtcggccgtc tcgacgacgt gctgctcatc
     2701 ggcgacttcc tctcgccgct ttccgacgtc agagccgtga tcgagggcat ctcggcccgg
     2761 ggcgcacgcg ggcacctgct gatgatcgtc gatcccgtcg aggagacgtt cccgttcgcc
     2821 ggacaggccg tcctgcacga cgtcgaggac ggcatccgcc tgcgcgtcgg cgacgccgcg
     2881 tcgtggggcg agtcataccg cggccgcatc gcgcagcatc gtgacgc
//
LOCUS       DASQWN010000637         3231 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_874316, whole genome shotgun sequence.
ACCESSION   DASQWN010000637 DASQWN010000000
VERSION     DASQWN010000637.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 3231)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3231)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3231
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_874316"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..748)
                     /locus_tag="VE686_11975"
     CDS             complement(<1..748)
                     /locus_tag="VE686_11975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012317060.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004129 - cytochrome-c oxidase activity
                     [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA];
                     GO_process: GO:0009060 - aerobic respiration [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cbb3-type cytochrome c oxidase subunit I"
                     /protein_id="HYY85201.1"
                     /translation="MAYAAHADHADHHTPTGWRRWMYSTNHKDIGTLYLIFSFCAGIV
                     GAALSILMRMELQEPGLQIFANPQAYNVVVTGHGLIMVFFLVMPALIGGFGNWFVPLM
                     IGAPDMAFPRMNNISYWLTVAGFFLLCTSLFFEGAPGSLGFGGGWTVYPPLSTGGHPG
                     PALDFGILALHTAGAASILGAINFITTILNMRAPGMTLHKMPLFAWSILVTAFLLLLA
                     LPVLAGAITMLLTDRNFGTTFFDPAGGGDPI"
     gene            complement(790..1644)
                     /gene="coxB"
                     /locus_tag="VE686_11980"
     CDS             complement(790..1644)
                     /gene="coxB"
                     /locus_tag="VE686_11980"
                     /EC_number="7.1.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017486505.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004129 - cytochrome-c oxidase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c oxidase subunit II"
                     /protein_id="HYY85202.1"
                     /translation="MRIETMGRTALRLATTGLALGVGLTAALAAGTGQPDPWQINMQV
                     PVTEVARSIVSFHNWLVWLITAVSLFVLALLVIIVVKFNERANPTPSRTAHHTLLEVA
                     WTIVPVLILVVIAIPSFRLLRLQLVEPKADIVVKAIGHAWYWEYEYPGDQGGFKFDSN
                     LTVEEFKDATPERPRLLEVDNEVVVPINKVVRVQVTAADVLHAFAVPSFGIKVDAIPG
                     RLNETWFRAEREGVYYGQCSELCGQRHAYMPIKVRVVSDQAYATWLTEAKKKFAQADG
                     RTKLAAAQ"
     gene            1941..2447
                     /locus_tag="VE686_11985"
     CDS             1941..2447
                     /locus_tag="VE686_11985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011508858.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="invasion associated locus B family protein"
                     /protein_id="HYY85203.1"
                     /translation="MASNLSRTALILAGLGLCLAAAPAFAQGVVKNTFGDWQLRCETP
                     AGAKNEQCAIVQNVAAEDRPNLTLLVIVLKTADGKSRLLRVAAPLGVLLPAGLGLKID
                     QNDVGRAGFVRCLATGCIAEVVLEDPLINQFKTGGTATFIVFQTPEEGIGIPVSLGGF
                     AQAFDSLP"
     gene            2475..3032
                     /locus_tag="VE686_11990"
     CDS             2475..3032
                     /locus_tag="VE686_11990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019906879.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY85204.1"
                     /translation="MNYVRVTLAAACLAALAGCSSTSGEGGGGTLSNFLLYGGATVPP
                     SRSDAFFEAPCPSVDVFEGGSAMRVGSAQIAIGELARECAVNDQDKSVSVKVGVEGRV
                     LLGPGGAGGRFTAPVRINIKVGDRILASRTRTVSVAIPPGEAQAFFNVVEEGFVVPNQ
                     FARDYEIEVGLAGGRGAAPARRKGR"
BASE COUNT          527 a         1046 c         1143 g          515 t
ORIGIN      
        1 ggatcgggtc gccgccgccg gccggatcga agaaggtcgt gccgaagttg cggtcggtca
       61 gcagcatcgt gatcgcgccc gcgagcaccg gcagggcgag gagcagcagg aacgccgtca
      121 ccaggatcga ccaggcgaac agcggcatct tgtgcagcgt catgccgggc gcgcgcatgt
      181 tcaggatggt ggtgatgaag ttgatggcgc cgaggatcga ggcggcgccg gcggtgtgca
      241 gcgccaggat gccgaaatcg agggccgggc cggggtggcc gcccgtcgag agcggcggat
      301 agacggtcca gccgccgccg aagccgagcg agccaggcgc gccctcgaag aacagcgagg
      361 tgcagagcag gaagaagccg gcgacggtga gccagtacga gatgttgttc atgcgcggga
      421 acgccatgtc gggcgccccg atcatcagcg gcacgaacca gttcccgaag ccgccgatca
      481 gcgccggcat gaccaggaag aacaccatga tcagtccgtg gccggtcacg accacgttgt
      541 aggcctgcgg attggcgaag atctgcagcc ccggctcctg caactccatg cgcatcagga
      601 tcgacagcgc ggcgccaacg atgccggcgc agaacgagaa gatcaggtag agggtgccga
      661 tgtccttgtg gttggtggag tacatccacc gccgccaccc ggtcggggtg tggtggtcgg
      721 cgtggtcggc gtgggctgcg tatgccatgt cctttagacc ttggtctttc gtgttccggt
      781 tcgaggttct tactgcgcgg ccgcgagctt ggtccggccg tccgcttggg cgaacttctt
      841 cttcgcctcc gtcagccacg tcgcataagc ttggtcgctg acgacgcgga ccttgatggg
      901 catgtaggcg tggcgctggc cgcacagctc agagcactgg ccgtaataga cgccctcgcg
      961 ctcggcgcgg aaccacgtct cgttcaggcg ccccgggatc gcgtcgacct tgatgccgaa
     1021 cgacgggacc gcgaaggcat gcagcacgtc ggcggccgtg acctgtacgc ggacgacctt
     1081 gttgatcgga accaccacct cgttgtcgac ctcgagaagc cgcgggcgct ccggcgtcgc
     1141 gtccttgaac tcctcgacgg tcaggttcga gtcgaacttg aagccgccct gatcgcccgg
     1201 gtactcgtat tcccagtacc aggcgtgccc gatcgccttc acgacgatgt cggccttggg
     1261 ctcgacgagc tgcagccgca ggaggcggaa cgacgggatc gcgatgacga ccaggatcag
     1321 caccgggacg atggtccagg cgacctcgag aagcgtgtga tgggccgtgc gcgagggggt
     1381 ggggttggcg cgctcgttga acttcacgac gatgatgacg aggagcgcga ggacgaacag
     1441 cgagacggcg gtgatcagcc acacgagcca gttgtggaac gacacgatgc tgcgggcgac
     1501 ttccgtgacc ggcacctgca tgttgatctg ccaggggtcg ggctgcccgg ttccggccgc
     1561 gagcgccgcc gtgaggccca caccgagcgc caacccggtc gtcgccagcc tgagcgcggt
     1621 ccgtcccatg gtctcgatcc gcatcttgtc ctcggagctc ctgtcgtgag gtcgctcgcg
     1681 ccatcggcgg ggcgtcgctt tggacgtgac gcgcgaacgt cggcgtaagg ccgccttttt
     1741 cgatcggcgc caaagaccac aacatgcgtg caagcgcaac ggtgccgtcc tcgacaatct
     1801 ctgcgtcata acggcccgag ccggcgcagt cccgcgcggg cttgggcgcc tcgcttgaca
     1861 gcgctgccgc cccatggtcc gaacgcaccc cgaaacgcgc ccccggcacc gtcggcggtg
     1921 cggctgcgga aggacttttc atggcgtcga atctgtcgcg cacggccctg atcctcgcgg
     1981 gtctcggact gtgtctcgcg gccgcgccgg cctttgccca gggcgtcgtc aagaacacct
     2041 tcggcgactg gcagctcagg tgcgagacgc cggccggcgc caagaacgag caatgcgcca
     2101 tcgttcagaa cgtcgccgcc gaggaccgcc cgaatctcac gctcctcgtc atcgtcctga
     2161 agaccgcgga cggcaaaagc cgcctgttgc gggtcgcggc accgctcggc gtgctgctcc
     2221 cagccggcct cgggctgaag atcgaccaga acgacgtcgg gcgcgcggga ttcgtgcgct
     2281 gcctcgccac cggctgcatc gccgaagtgg tgctggagga tccgctcatc aaccagttca
     2341 agacgggcgg gacggcgacc ttcatcgttt tccagacgcc ggaggagggc atcggcattc
     2401 cggtctccct cggcggcttc gcgcaagcat tcgacagcct gccgtaaagc gcaggggcgg
     2461 gaggggcttc gaccatgaac tacgtacgcg tgaccctcgc ggccgcgtgc ctggcggcgc
     2521 tcgccgggtg cagctccacc tcgggtgagg gtggcggcgg gacgttgtcg aatttcctcc
     2581 tctacggtgg cgcgacggtg ccgccgtcgc ggtcggacgc cttcttcgag gcgccgtgcc
     2641 cgtccgtcga tgttttcgag ggcggctcgg ccatgcgcgt cggctcagcg cagatcgcca
     2701 tcggcgagct tgcccgcgag tgcgccgtga acgaccagga caagtcggtc agcgtgaagg
     2761 tcggcgtcga gggccgcgtg ctcctcggac cgggcggtgc gggcggccgc ttcaccgcgc
     2821 cggtgcgcat caacatcaag gtcggagaca ggattctcgc gtcccggacc cggacggttt
     2881 cggtggccat cccgccgggt gaggcgcagg ccttcttcaa cgtggtcgag gaaggcttcg
     2941 tggtgccgaa ccagttcgcc cgcgactacg agatcgaggt cggcctcgcc ggcggacgtg
     3001 gcgcagcgcc cgcccgccgc aagggtcggt aagggatcgt ggctcttcgc gggtgcaatg
     3061 gcgagagtcg cgccccgttg ggcgctgcca ctgcaacccg aggcgtgcat agacggcccg
     3121 gaaagtgacg gcgatgatga aaccctctcc tagagagggc tccgacgaaa atgcgacgat
     3181 gatgaacgat cgaagtcggc cgcgcggcgt gcgaggccgc ggcgccggcg c
//
LOCUS       DASQWN010000638         3755 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_477594, whole genome shotgun sequence.
ACCESSION   DASQWN010000638 DASQWN010000000
VERSION     DASQWN010000638.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 3755)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3755)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3755
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_477594"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..631)
                     /locus_tag="VE686_11995"
     CDS             complement(<1..631)
                     /locus_tag="VE686_11995"
                     /EC_number="3.5.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018388351.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016813 - hydrolase activity, acting on
                     carbon-nitrogen (but not peptide) bonds, in linear
                     amidines [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hydantoinase/carbamoylase family amidase"
                     /protein_id="HYY85205.1"
                     /translation="MGPGTNRPIDGGRLWASLMEMAQIGATPKGGVRRLALSDLDRQG
                     RDLFKRWCEDAGLTVRVDAIGNMFARREGRDPKRLPVLFGSHLDSQPSGGKFDGALGV
                     LAGLEVVRTLNDLDITTEAPIELVNWTDEEGSRFGHSLMGSGVWAGVYEHPKVEALTD
                     QDGLTVAQALAETGIGGPEAATVFPADAYFELHTEQGPILERERKQIGIV"
     gene            735..1241
                     /locus_tag="VE686_12000"
     CDS             735..1241
                     /locus_tag="VE686_12000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007755130.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tripartite tricarboxylate transporter TctB
                     family protein"
                     /protein_id="HYY85206.1"
                     /translation="MQSDMDAAAKPARQGVIRAPQSFFAGLALIALGLFAIWAISNLP
                     QGTLGAMGPAMLPRWLAIAVALCGAALVVVGLLKEGEPLERWHLRGPILVAIGIICFA
                     VTIRWFGLAVAGPLALFIGGFGSDETRPKELLIFAILMTAFCIGLFRYLLNQPMPILI
                     IPGTSIYI"
     gene            1249..2751
                     /locus_tag="VE686_12005"
     CDS             1249..2751
                     /locus_tag="VE686_12005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012564680.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tripartite tricarboxylate transporter permease"
                     /protein_id="HYY85207.1"
                     /translation="MSEIISNLGLGFTVALSLQNLALCFAGCLVGTLVGVLPGVGPIA
                     TIAILLPITFGLDPVGALIMLAGIYYGAQYGGSTTAILVNIPGEATSVVTVLDGHQMA
                     RQGRAGIALGIAAIGSFFAGTVATVLIAALGVPLTKLALVFGPAEYFSLMVMGLVFAV
                     VLARGSILKAVTMIFIGILLSTIGTDLETGQERMTFGFPPLADGLDFAVLAMGMFGIA
                     EILRNLEHSETREVVRARIGRLLPGLAEMKQSVLPILRGTAIGSTLGILPGNGAVLGP
                     FASYTVEKKVAKDGSRFGRGAIEGVAGPEAANNAGAQTSFIPLLTLGIPPNAVMALMV
                     GAMTIHGIVPGPQVMTKNPNLFWGMIASMWIGNLMLLIINLPLVGLWVKLLQVPYRLM
                     FPSILIFCCIGIYSINSLPSDVVFIAIFGVIGYAFIKFGFEPAPLLLGFVLGKLMEEN
                     LRRALIISRGDLMTFLDRPISAALLAVAVILLIIALLPTIRKGRDEVFVE"
     gene            2801..>3755
                     /locus_tag="VE686_12010"
     CDS             2801..>3755
                     /locus_tag="VE686_12010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012252953.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tripartite tricarboxylate transporter
                     substrate-binding protein"
                     /protein_id="HYY85208.1"
                     /translation="MKKLFVLTAAALLAGVAGAQAQAWPTRPITMIVPFAAGGPTDVV
                     ARIVGEHMSRTLGQQIVVENVTGAGGTTGITRAKQATPDGYTIAMGHMGTHGAAPALY
                     PNLRYDPAKDFEPIGVAAGTPILIVTKKDFPATNLKEFLDHLKTSGPKLNEANAGVGS
                     VSHTTCTLLQSLTGTKFTRVPYRGTGPALNDLVAGQVDFGCDQIVNLVPQIQAGTIKA
                     VAIATKERSPSLPNVPTTKEGGLPEYEVSAWNAVFAPKDTPKEVTAKLVDALDKSLSD
                     ENTRKRLLELGGIIPEGADRGPQALQKLVESEVARWTPVLKA"
BASE COUNT          580 a         1309 c         1192 g          674 t
ORIGIN      
        1 tgacgatgcc gatctgcttg cgctcgcgct cgaggatcgg gccctgctcg gtgtgcagct
       61 cgaaataggc gtcggccggg aacaccgtcg cggcctccgg cccgccgatg ccggtctcgg
      121 cgagagcctg ggcgactgtc agcccgtcct gatcggtgag cgcctcgacc ttggggtgct
      181 cgtacacacc ggcccagacg ccggagccca tgaggctgtg cccgaaccgc gagccctcct
      241 cgtcagtcca gttcacgagt tcgatcggcg cttccgtggt gatgtcgagg tcgttgagcg
      301 tccgcacgac ctcaaggcct gcgagcacgc cgagtgcccc gtcgaacttg ccgcccgagg
      361 gctggctgtc gaggtggctg ccgaagagca ccggcagccg cttcgggtcg cggccctcgc
      421 gccgcgcgaa catgttgccg atcgcgtcga cccggaccgt gagccctgcg tcctcgcacc
      481 accgcttgaa caggtcgcgg ccctggcgat cgaggtcgct caaggccagc cgtcgaacgc
      541 cgccctttgg cgtcgcgccg atctgcgcca tctccatgag gctcgcccag aggcgacctc
      601 cgtcgatcgg ccggttggtg cctggtccca ttatactccc cattatgtgt gctggcgtgc
      661 tcttgctgcc cgccgcgggg tggtgttcaa ctcctggcca cgccaaaggc aatgatgtgg
      721 ctgggagtga ctcgatgcaa tccgatatgg acgccgctgc gaagccggcg cgccagggcg
      781 tgatccgcgc ccctcaaagc ttctttgctg gattagcgct gatcgcgcta ggcctgttcg
      841 cgatctgggc aatcagcaac ctgccccagg gcacgctcgg ggcgatgggg cccgccatgc
      901 tgccgcggtg gctcgccatc gcggtcgcat tgtgcggggc cgcgctcgtc gtggttgggc
      961 tgctcaagga aggcgaaccc ctcgagcgct ggcacctgcg cggacctatc ctcgtcgcca
     1021 ttggaatcat ctgctttgcc gtgacaatcc gctggttcgg ccttgccgtc gcgggcccac
     1081 tggcgctgtt catcggaggg ttcggaagcg acgagacgcg gcccaaggag cttctcattt
     1141 tcgcgatcct gatgaccgcc ttctgcatcg gcctgttccg ctatctcctg aaccagccga
     1201 tgccgatcct catcatcccc ggcacctcga tctacatctg agccccgcat gagtgagatc
     1261 atctcaaacc tcgggctcgg cttcaccgtc gccctcagcc tacagaatct cgcactctgc
     1321 ttcgcgggct gcctcgtcgg caccctcgtc ggggtgcttc ctggcgtcgg accgatcgcg
     1381 acaatcgcca tcctgttacc gatcaccttc ggactcgacc ccgtcggcgc gctgatcatg
     1441 ctcgccggca tctactacgg cgcgcaatat ggcggctcga cgacggcgat cctggtcaac
     1501 atccccggcg aggcgacctc ggtggtcacc gtgctggacg gccaccagat ggcgcgtcag
     1561 ggccgcgccg gcattgcgct cggcattgcg gcgatagggt cgttcttcgc cggcacggtg
     1621 gcgacggtgc tgatcgcggc gctcggcgtg ccgctgacca agcttgccct ggtgttcggc
     1681 ccggccgagt atttctcgct catggtcatg ggcttggtgt tcgccgtcgt gctcgcgcgc
     1741 ggatcgatcc tgaaagcggt gacgatgatc ttcatcggca tcctgctctc gaccatcggg
     1801 accgacctcg agaccggcca ggagcgcatg acgttcgggt tcccgccgct cgcggacggg
     1861 ctcgacttcg cggtgctcgc catgggcatg ttcgggatcg ccgagatctt gcgcaatctc
     1921 gagcactcgg aaacgcgcga ggtcgtgagg gcgcgcatcg ggcgccttct gcccgggctc
     1981 gcggagatga agcagtccgt gctgccgatc ctgcgcggca cggccatcgg ctcgaccctc
     2041 ggcatcctgc ccggcaacgg tgccgtgctc gggcccttcg cctcctatac cgtcgagaag
     2101 aaggtcgcca aggacggcag ccgcttcggc cgcggcgcga tcgagggcgt ggccgggccg
     2161 gaggccgcca acaacgccgg cgcgcagacc tcgttcattc cgctcttgac gctcggcatc
     2221 ccgccgaatg ccgtcatggc tctcatggtc ggcgccatga ccatccacgg catcgtgccg
     2281 ggcccgcagg tgatgaccaa gaacccgaac ctgttctggg gcatgatcgc gtcgatgtgg
     2341 atcgggaacc tcatgctcct gatcatcaac ctgcccctcg tcggcctgtg ggtgaagctg
     2401 ctgcaggtgc cttaccggct gatgttcccg tccatcctga tcttctgctg catcggcatc
     2461 tactcgatca acagcttgcc gtcggacgtg gtgttcatcg ccatcttcgg ggtgatcggc
     2521 tacgccttca tcaagttcgg cttcgaacca gcgccgctcc tgctggggtt tgtcctcggc
     2581 aagctcatgg aagagaatct gaggcgggcg ctcatcatct cgcgcggcga cctgatgacc
     2641 ttcctcgacc gaccgatcag cgccgccttg ctcgccgtcg cggtcatcct gcttatcatc
     2701 gcgctcctgc cgacgatccg gaagggccgg gacgaggtct tcgtggaatg aaccgggacg
     2761 cttctcgcgc cgttgcctgc agaatgtgtg gaggactccc atgaaaaagc tgttcgttct
     2821 taccgcagcg gcgctgctcg ccggcgtagc tggcgcccag gcgcaggcct ggccgacacg
     2881 gcccatcacc atgatcgtcc ctttcgcggc cggcggtccc accgacgtgg tggcccgcat
     2941 cgtcggcgag cacatgtcgc gcacgctcgg gcagcagatc gtcgtcgaga acgtcaccgg
     3001 agccggcggc acgacgggca tcacccgggc aaagcaggcg acgcctgacg gctacacgat
     3061 cgccatgggc cacatgggca cacacggggc agcgccggcg ctgtatccga acctgcgcta
     3121 cgaccccgcc aaggacttcg agccgatcgg cgtcgcggcg gggaccccga tcctgatcgt
     3181 caccaagaag gacttcccgg cgacgaacct gaaggagttc ctggaccacc tcaagacgag
     3241 cggccccaag ctgaacgagg ccaatgccgg cgtcggctcg gtgtcgcata ccacctgcac
     3301 gctgctgcag tcactgaccg gcaccaagtt cactcgcgtg ccctaccgcg gcacagggcc
     3361 ggctctgaac gacctcgtgg ccgggcaggt cgatttcggc tgcgatcaga tcgtcaacct
     3421 cgtgccgcag atccaggccg ggaccatcaa ggcggtcgcc atcgccacca aggagcgctc
     3481 gccttcgctg cccaacgttc cgacgaccaa ggaaggcggc cttcccgagt acgaggtgag
     3541 cgcctggaac gccgtgttcg ccccgaagga taccccaaag gaagtcaccg ccaagctcgt
     3601 cgacgccctc gacaagtcgc tctcggacga gaacacccgc aagcgcctgc tcgagctcgg
     3661 cgggatcatc ccggaaggcg ccgaccgcgg cccgcaggcc ctgcagaagc tcgtcgagag
     3721 cgaggtcgcg cgctggaccc ccgtgctgaa ggcag
//
LOCUS       DASQWN010000639         3504 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_477991, whole genome shotgun sequence.
ACCESSION   DASQWN010000639 DASQWN010000000
VERSION     DASQWN010000639.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 3504)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3504)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3504
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_477991"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(162..839)
                     /gene="trmB"
                     /locus_tag="VE686_12015"
     CDS             complement(162..839)
                     /gene="trmB"
                     /locus_tag="VE686_12015"
                     /EC_number="2.1.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019403618.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008176 - tRNA
                     (guanine(46)-N7)-methyltransferase activity [Evidence
                     IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (guanosine(46)-N7)-methyltransferase TrmB"
                     /protein_id="HYY85209.1"
                     /translation="MSAEQAGAFFGRRKGKRLRTGQEELLETLLPRLRVPAVGPIDPA
                     ALLPGSASITLEIGFGGGEHLAAEARARPDAGFIGCEPFVNGMAKLLAVIAAEGLANL
                     RLWDRDATELLPLLPAGAIDAVYLLYPDPWPKRRQRKRRFISDETLRAFARIMRPGAE
                     LRFATDIDDYAGWALAHVLRSSDFEWTAQRADDWRQPWERWPGTRYEAKAMREGRPPS
                     YLTFRRR"
     gene            complement(851..2026)
                     /gene="metK"
                     /locus_tag="VE686_12020"
     CDS             complement(851..2026)
                     /gene="metK"
                     /locus_tag="VE686_12020"
                     /EC_number="2.5.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012334997.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004478 - methionine adenosyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006556 - S-adenosylmethionine biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methionine adenosyltransferase"
                     /protein_id="HYY85210.1"
                     /translation="MPRSDYLFTSESVAEGHPDKVCDRISDAVVDAYLGAMPEARVAC
                     ETLATTNRIVIAGEVRGPAAIRDRVEDLAREAVRDIGYAQDGFHWQTAKVEVLLHAQS
                     ADIAQGVDAAGNKDEGAGDQGIMFGYACDETPELMPAPIYYAHKILEDLASARKTKTN
                     GVGALGPDAKSQVTVRYVNGRPVEATQIVLSTQHLDASLESRDVRKIVEPYIRRALPD
                     GWVTDETIWHVNPTGKFVIGGPDGDCGLTGRKIIVDTYGGAAPHGGGAFSGKDPTKVD
                     RSAAYAARYLAKNIVAAGLATRCTLQLAYAIGVAKPLSIYVDLHGTGNVDAGKLETAL
                     MDAMDLTPRGIRTHLGLNKPIYARTAAYGHFGRKPQDDGGFSWERTDLAPALKAALS"
     gene            complement(2110..2517)
                     /locus_tag="VE686_12025"
     CDS             complement(2110..2517)
                     /locus_tag="VE686_12025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013168727.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HYY85211.1"
                     /translation="MGSKSPDAVDRFIGARVRMRRILVGVSQEKLGEALGITFQQIQK
                     YEKGTNRISVSRLHQIAGVLGVPVSMFYEGAPEAGEGAPGLRERGAARYETDFLGSPE
                     GVQLMRAFLRIKNTRVRRKLVELAVAFADGANE"
     gene            complement(2655..>3504)
                     /gene="lnt"
                     /locus_tag="VE686_12030"
     CDS             complement(2655..>3504)
                     /gene="lnt"
                     /locus_tag="VE686_12030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019904938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0016410 - N-acyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0006497 - protein lipidation [Evidence
                     IEA];
                     GO_process: GO:0042158 - lipoprotein biosynthetic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="apolipoprotein N-acyltransferase"
                     /protein_id="HYY85212.1"
                     /translation="LSDRATSPQSSGVADVTHLIWPESAFPFLLHRDARALADIAALL
                     PPGVTLITGAARAEEPLPGETGLRFYNSVQAVADDGTIVSTYDKAHLVPFGEYFPLVL
                     DSVLRGLGLRQFVHVPGGFTPAASRRTFEVRGLPPAAATVCYEAIFPGEIAAAGARPG
                     LILNLTNDAWFGSTPGPRQHLAQARLRAVEEGLPLVRAANTGISAVVDGYGRTLRLLP
                     LGVEGVLDAPLPRPLAGTPYRDAGDLWFAGLIAGFAAAALLSRRRFGARNSPRPRDFQ
                     RGRELL"
BASE COUNT          601 a         1146 c         1203 g          554 t
ORIGIN      
        1 aaggtgctcg ggtctcgcgc gcggcggtcc agataacaaa aaagagcgga cccgggcggg
       61 cccactcttg aaccgcagcg tgagctgcaa ccagagctga caggccttat ctagcgattc
      121 cggacaggcg cggcaagagg ctcaaagatc cgatggccgc ctcagcgccg gcggaaggtg
      181 aggtaggagg gcgggcggcc ttcgcgcatc gccttcgctt cgtagcgcgt tccgggccat
      241 cgttcccacg gttggcgcca gtcgtcggca cgctgcgccg tccattcgaa gtcgctggag
      301 cgtaggacgt gcgcgagcgc ccagcccgcg tagtcgtcaa tgtcggtggc gaagcggagt
      361 tcggcacccg ggcgcatgat gcgcgcgaag gcccgcaggg tctcgtcgga gatgaaccgg
      421 cgcttgcgct ggcgccgctt gggccaggga tccggataca ggagatatac ggcgtcgatc
      481 gcgccggcgg gtaacagggg cagcagctcc gtcgcgtcgc gatcccagag ccggaggttg
      541 gcgagccctt ccgcggcgat gacggcgagg agcttcgcca tgccgttcac aaacggctcg
      601 cagccgatga agcctgcgtc ggggcgcgcg cgcgcctcag cggcgagatg ctcgccgcca
      661 ccgaagccga tttcgagggt gatggaagct gagccgggca gcaacgccgc cgggtcgatc
      721 ggacctacag caggaacacg cagccggggg aggagggtct cgagaagctc ctcctgccca
      781 gtccgcagac gcttaccctt ccgacgacca aagaaagcgc cggcttgttc ggcgctcacg
      841 ccggcaaggc ttacgacagc gcggccttca gcgcgggggc gaggtcagtc cgctcccagg
      901 agaagccgcc gtcgtcctgc ggcttgcggc cgaagtggcc ataggcggcg gtccgggcgt
      961 agatcggctt gttcaggccg agatgcgtgc gaatcccgcg cggcgtcaga tccatcgcgt
     1021 ccatgagcgc ggtctcgagc ttgccggcat cgacgttgcc cgtcccatgc aggtcgacgt
     1081 agatcgacag cggcttcgca acacctatgg cgtaagcgag ttgcagggtg cagcgggtgg
     1141 cgagcccggc cgcgacgatg ttcttggcga ggtaacgggc ggcgtaggcc gcagagcggt
     1201 cgaccttggt cggatccttg cccgagaagg cgcccccgcc gtgcggcgcc gcgccgccgt
     1261 aggtatcgac gatgatcttg cgtccggtaa ggccgcagtc gccgtccggt cctccgatga
     1321 cgaacttgcc ggtcggattg acgtgccaga tggtctcatc ggtcacccag ccgtccggaa
     1381 gcgcgcgacg aatgtagggc tccacaatct tgcgaacgtc gcgcgattcg agggacgcgt
     1441 cgaggtgctg cgtcgagagc acgatctgcg tcgcctcgac aggccggccg ttgacgtagc
     1501 gcaccgtcac ctggctcttg gcgtcggggc cgagcgcacc gacgccgttg gtcttcgtct
     1561 tgcgggccga cgcgaggtcc tcgaggattt tgtgcgcgta gtagatcggg gccggcatca
     1621 gctcgggcgt ttcgtcgcag gcgtagccga acatgatgcc ctggtcgccc gcgccctcgt
     1681 ccttgttgcc ggcggcgtcg acgccctgtg caatgtcggc cgattgcgcg tgcagcagaa
     1741 cctctacttt ggccgtctgc cagtggaagc cgtcctgcgc gtaaccgatg tcgcggaccg
     1801 cctcccgcgc aaggtcctcg acgcgatcac ggatggcggc cgggccgcga acctcgccgg
     1861 cgataacgat gcggttcgtc gtcgcaagcg tctcgcaggc gacacgggcc tccggcatcg
     1921 ctccaagata agcgtcgacc acggcgtccg agatgcgatc gcagaccttg tctggatgcc
     1981 cctcagcgac cgactcgctt gtgaacagat aatcagacct cggcacgtga cgcccttccc
     2041 acaatccgag cgcgcttgtg cctccgcagg gacgctgcgt caaggcggcg gggccggtag
     2101 aagttgtacc tactcgttgg ctccgtccgc gaaggcaacc gcgagttcga cgagctttcg
     2161 gcgaacccgc gtattcttga tccgcaagaa cgcgcgcatg agctggacac cttcgggcga
     2221 gccgaggaag tcggtttcgt agcgcgcggc cccgcgttcg cgcaggccgg gcgcgccttc
     2281 ccccgcctcg ggagcgcctt cgtagaacat gctgacgggg acaccgagga cgccggcgat
     2341 ctggtgcagc cggctcacgc tgatgcggtt cgtccctttc tcgtacttct ggatttgctg
     2401 aaaggtaatc ccgagggctt cgcccaactt ctcttggctc acgccgacga ggatgcgccg
     2461 catgcgcacc cgcgccccga taaaccgatc gacagcatcg ggcgacttgc ttcccataat
     2521 ataggatccc ctagaggtgg gctcgtggtg cgcccgggtt gctcggctcg aaaacgtacg
     2581 ccgatcgcgt tggcgaagcg caattcatct cgcgagggca cactaccgca agcgcatccg
     2641 caatcaacta atggttacaa caactcgcgg ccgcgctgaa aatcccgggg ccgcggcgag
     2701 ttgcgcgctc caaagcgcct gcgcgacagg agggctgcgg ccgcgaaacc tgcgatgaga
     2761 ccggcgaacc agagatcgcc tgcgtcgcgg tacggcgtac ctgcgagcgg acggggcaga
     2821 ggcgcatcga gcacgccctc cacgccgagc ggcaggagac ggagcgtgcg accgtaaccg
     2881 tcaacaacgg ccgagatccc ggtgttggcg gcgcgtacga gcggtaggcc ctcttccacg
     2941 gcgcgcaggc gagcctgcgc gagatgctgg cggggcccgg gtgtactgcc gaaccaagcg
     3001 tcattggtga ggttcaggat gagacctggc cgcgcgcctg cggccgcgat ctcgccggga
     3061 aagatggctt cgtagcacac cgtcgcagct gccggcggca atccccgaac ctcgaaggtc
     3121 cgccgcgagg cagcgggggt gaacccgccc gggacgtgca caaactgccg caagccgagg
     3181 ccccgcagca cgctgtcgag cacaagggga aagtactctc cgaacggcac caaatgcgcc
     3241 ttgtcgtacg tactcacaat tgtgccgtcg tccgcgaccg cctgcaccga attgtagaac
     3301 cgcagtccag tttctcccgg aagcggctcc tcggcgcggg ccgcgccggt gataagggtc
     3361 acgccgggtg gcagcagggc cgcaatgtcc gccaacgcgc gcgcatcgcg atgcagcaag
     3421 aaggggaacg ccgactccgg ccagatcagg tgggtcacat cggccacgcc ggacgactgt
     3481 ggtgatgttg cgcggtcgct caac
//
LOCUS       DASQWN010000640         2029 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_976065, whole genome shotgun sequence.
ACCESSION   DASQWN010000640 DASQWN010000000
VERSION     DASQWN010000640.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2029)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2029)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2029
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_976065"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..454
                     /locus_tag="VE686_12035"
     CDS             <1..454
                     /locus_tag="VE686_12035"
                     /inference="COORDINATES: protein motif:HMM:NF014841.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051287 - NAD binding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="NAD(P)-dependent oxidoreductase"
                     /protein_id="HYY85213.1"
                     /translation="GAEIAAQDGCTVVPTLHEALPDADFVVLACALTPTTRGLIDAAA
                     LARMKPSAFLVNVSRGPVVDEAALIAALQARRLAGAGLDVLQTEPPLPDNPLLTRDDV
                     VLTPHTAAYVATAYERMAVAAAEKTLAGLDGRLGPQDVVNPDAFSPSV"
     gene            complement(475..>2029)
                     /locus_tag="VE686_12040"
     CDS             complement(475..>2029)
                     /locus_tag="VE686_12040"
                     /inference="COORDINATES: protein motif:HMM:NF014585.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hydantoinase B/oxoprolinase family protein"
                     /protein_id="HYY85214.1"
                     /translation="RTSRSTIVRELLDYSTAVFDRDGYNVAQSARIPQHLNSMGAGLL
                     TLVRDFMPLDTWEEGDVVISNDPYCGGQHIPDILAFRAVFVDGERVATVGTLCHHLDM
                     GGIAAGSYGATATEIFQEGLRIPPVKLFKRGVLNEEVLALMRQNVRRPDMLWGDLQAQ
                     IASLAMGDSNIRKLAGRYGAQTIVAACAQILDSSERAMRAMIGRMPDGRYEFEDFMDD
                     DGLVDQPIRIHAAVEIRGDEMIVDLSGSGPQALGPINATLASSGSAVSYAVMACADEP
                     IPANAGCYRPVTVVAPEGLIVSARHPAPVANRVAVTHRLSTTLLGALAQAVPERIPAA
                     YYGTSYVCTFQTIGERGERSVLVEIEVGGGGGHPEQDGPHAYACGMHNNSNIPVEMIE
                     SELPLSITRYELLPDTGGAGLHRGGLGLAREWRVDCPEAVFTANLERFKFRPYGLAGG
                     EPGSPGRLFLIRDGERRPLASKVGNLRLRRGDIIRLETSGGGGFGDPAQRTPEAVARD
                     QERGYVAVR"
BASE COUNT          293 a          712 c          726 g          298 t
ORIGIN      
        1 gggtgcggag atcgccgcgc aggacggatg caccgtcgtc ccgacgctcc atgaggccct
       61 cccggacgcc gacttcgtcg tgctcgcctg cgccctgacg ccgacgacgc gcggcctcat
      121 cgacgcggcg gcgcttgccc gcatgaagcc ctccgccttc ctcgtgaacg tctcccgcgg
      181 ccccgtcgtc gacgaggcgg cgctcatcgc cgccctccag gcgcgccgtc tcgccggcgc
      241 cggcctcgac gtcctgcaaa ccgagccacc ccttcccgac aacccgctgc tcacgcgcga
      301 cgacgttgtc ctgaccccgc acacggccgc ctacgtcgcc acggcctacg agcgcatggc
      361 cgtcgccgca gccgagaaaa ccctggccgg cctcgacggc cgcctcggcc cgcaggacgt
      421 cgtcaatccg gacgcgttct cgcccagcgt ttgagagctt ccctcacctg gccgtcagcg
      481 cacggcgacg tagccgcgct cctggtctcg cgcgaccgcc tcgggcgtgc gctgggcggg
      541 gtcgccgaag ccgccgccgc ctgaggtttc gaggcggatg atgtcgccgc ggcgcaggcg
      601 caggttgccg accttcgagg cgagcggccg gcgctcgccg tcgcggatga ggaacaggcg
      661 gcccgggctg ccaggctcgc cgccggcgag gccgtagggc cggaacttga aacgctcgag
      721 gttcgccgtg aacaccgcct ccgggcagtc gacgcgccac tcgcgggcaa ggccgaggcc
      781 gccgcggtgc agcccggctc cgcccgtgtc gggcaggagc tcgtagcgcg tgatcgacag
      841 cggcagctcg ctctcgatca tctcgaccgg gatgttcgaa ttgttgtgca tgccgcaggc
      901 gtaggcgtgc ggaccgtcct gctcgggatg gccgccgccg ccgccgacct cgatctcgac
      961 gaggacgctg cgctcgccgc gctcgccgat ggtctggaac gtgcaaacat agctcgtgcc
     1021 gtaataggcg gcgggaatgc gctcgggcac cgcctgcgcg agcgccccga gcagcgtggt
     1081 cgagaggcgg tgcgtgacgg cgacgcggtt cgcgacgggc gcaggatggc gcgcgctgac
     1141 gatgaggcct tccggtgcga cgacggtcac cggccggtag cagccggcgt tcgcgggaat
     1201 gggctcgtcg gcgcaggcca tcacggcgta cgataccgcc gagcccgacg acgccagcgt
     1261 cgcgttgatg gggccgagcg cctgcggacc cgagcccgac aggtcgacga tcatctcgtc
     1321 gccgcggatc tcgacagcag catggatccg gatcggctgg tcgacgagtc cgtcgtcgtc
     1381 catgaagtcc tcgaactcgt agcggccatc cggcatgcgg ccgatcatgg cccgcatggc
     1441 ccgttccgat gaatcgagga tttgcgcgca ggcggcgacg atggtttgcg cgccgtagcg
     1501 gcccgcgagc ttgcggatgt tcgaatcgcc catggcgagc gaggcgatct gggcctgcaa
     1561 gtcgccccac agcatatcgg gccggcgcac gttctggcgc atgagcgcca gcacctcctc
     1621 gttcagcacg ccacgcttga acagctttac gggcggaatc cgcaggccct cctggaaaat
     1681 ctccgtcgcg gtggcgccgt agctgccggc cgcgatgccg cccatgtcga ggtggtggca
     1741 cagggtgccg acggtggcga cgcgttcgcc gtcaacgaac acggcccgga acgcgaggat
     1801 gtctgggatg tgctggccgc cgcaataggg gtcgttcgag atgacgacgt cgccctcctc
     1861 ccaggtgtcg aggggcatga agtcgcgaac gagggtgagg agccccgcgc ccatggaatt
     1921 gaggtgctgg ggaatgcggg cggactgcgc gacgttgtag ccgtcgcggt cgaacacggc
     1981 ggtcgagtag tcgaggagct cgcgcacgat ggtggagcgg ctggtgcgc
//
LOCUS       DASQWN010000641         2439 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_479181, whole genome shotgun sequence.
ACCESSION   DASQWN010000641 DASQWN010000000
VERSION     DASQWN010000641.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2439)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2439)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2439
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_479181"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(31..825)
                     /locus_tag="VE686_12045"
     CDS             complement(31..825)
                     /locus_tag="VE686_12045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016844202.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-CoA hydratase-related protein"
                     /protein_id="HYY85215.1"
                     /translation="MREQYETLALSEPAGQVLQVTLNRPNVANAMNSQMGLDLLDVFT
                     GLFGRPDAYRAVVVTGAGERAFCAGGDLKERQGMSDETWQAQHLIFERMIRAVLEAPM
                     PVIAAVNGAAYAGGCEISLGCDFIYAARTARFALTEVTIGIMPGAGGTQTLPRAVGLR
                     RAKEILLTGRPFTAEQAYEWGMVNRLCEPGSVVQDAVETATVIAGNAPISIRQAKRSM
                     HYGVNMSLADGMLFEIEAYNRMVPTDDRREGIASFNEKRKPVFRGR"
     gene            complement(836..1984)
                     /locus_tag="VE686_12050"
     CDS             complement(836..1984)
                     /locus_tag="VE686_12050"
                     /EC_number="2.8.3.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016844201.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CoA transferase"
                     /protein_id="HYY85216.1"
                     /translation="MPSAKPLAGITVVEIGHSVAAPYAGLILSELGADVIKVENPKGG
                     DYARGWGPPFWNGTASAFHGLNRGKTGITVNFGDPEEAGRLRRLIIDRADAVIQNLRA
                     GVMQGYGLGAAELTAAKPSLIYCDLGAFGESGPMSSKPGYDPLMQAFAGIMSVTGEGG
                     DRPPVRVGVSIVDMGSGMWATIGILAALFERTRTGRGGAVATSLYETALAWMTVPLAG
                     YAANGEVRRPHGSGTAEIAPYQCFPTRGGWLMIAAGNDNLYRRLCATLGRPELGEDAR
                     FLTNGDRVVNRGVLVPMIEEITRTWDIEELMAALDKAGIPNAPLQNVAQVTDHPQTHA
                     VGILQQGPEGALPTVGLPLAFDGERSSYERAAPELGEHNETVLGTAKT"
     gene            2075..>2439
                     /locus_tag="VE686_12055"
     CDS             2075..>2439
                     /locus_tag="VE686_12055"
                     /inference="COORDINATES: protein motif:HMM:NF012711.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AMP-binding protein"
                     /protein_id="HYY85217.1"
                     /translation="MTATTISWAAEFAVLASRFAERTAVTDSCGQTTYAELFRRAAGL
                     GESLIAAGVTPGEPVATFLRNGRPALWASMGVTITGAAETALNPGLGQADREHCLAVS
                     KARHVVTSAAHADLFRRPGL"
BASE COUNT          349 a          823 c          867 g          400 t
ORIGIN      
        1 gcgctaccgt ctcggtcatg tcgtctctcc tcagcggcct ctgaagaccg gcttgcgttt
       61 ctcgttgaag gacgcgatgc cctcgcgccg gtcgtcggtc ggaaccatgc ggttgtaggc
      121 ctcgatctcg aaaagcatgc cgtcggcgag gctcatgttc acgccgtaat gcatcgaccg
      181 cttcgcctgc cggatggaga tcggcgcgtt gccggcgata acggtcgcgg tctcgaccgc
      241 gtcctgcacc acgctgccgg gctcgcacag gcggttgacc atgccccact cgtaggcctg
      301 ctcggccgtg aacggccgcc ccgtcagcag aatctccttc gcccggcgca ggcccacggc
      361 gcgggggagg gtctgcgtgc cgccggcgcc cggcatgatg ccgatcgtca cctcggtgag
      421 cgcgaagcgg gccgtgcgcg ccgcatagat gaagtcgcag ccgagcgaaa tctcgcagcc
      481 gccggcgtag gccgcgccgt tcacggcggc gatgaccggc ataggcgctt cgagaacggc
      541 gcggatcatg cgttcgaaga tgagatgctg cgcctgccat gtctcgtcgg acatgccctg
      601 gcgttctttc aggtcgccgc cggcgcagaa ggcgcgctcg ccggcgcccg tcaccaccac
      661 ggcgcgatac gcgtccgggc ggccgaaaag gccggtgaat acgtcgagga ggtcgaggcc
      721 catttgcgag ttcatggcat tggcgacgtt cggccggttg agcgtgacct gcaggacctg
      781 tcccgcgggc tcgctgagcg ccagtgtctc gtattgctcc cgcatgtcct ccccttcagg
      841 tctttgcggt cccaaggacc gtttcgttgt gctcgccgag ctcgggcgcg gcgcgctcgt
      901 aggatgagcg ctcgccatcg aacgcgagcg gcaggccgac ggtcggcagg gcgccttccg
      961 gcccctgctg caggatgccg accgcgtggg tctgcggatg atcggtcact tgcgcgacgt
     1021 tctgcagcgg cgcgttcgga atccctgctt tgtcgagcgc cgccatcagc tcctcgatgt
     1081 cccacgtccg cgtgatctcc tcgatcatcg gcaccaggac cccgcggttg accacgcggt
     1141 caccgttggt gaggaaacgg gcgtcctcgc cgagctcggg cctgcccagc gtcgcgcaca
     1201 ggcggcgata gaggttgtcg ttgccggcgg cgatcatcag ccagccgccg cgcgtcggga
     1261 agcattggta cggggcgatc tcggccgtgc cggagccgtg cggacgccgg acctcgccgt
     1321 tcgccgcata gcccgcgagc ggcacggtca tccaggcgag ggccgtttcg tagagcgacg
     1381 tcgcgaccgc gccgccgcgg ccggtgcggg tgcgctcgaa cagggccgca aggatgccga
     1441 tggtcgccca catccccgaa cccatgtcga cgatcgagac gccgacgcgg accggcggcc
     1501 ggtcgccgcc ttcgccggtc acgctcatga tgcccgcgaa ggcctgcatg agaggatcgt
     1561 acccgggctt cgacgacatc ggaccgcttt cgccgaaggc gccgaggtcg cagtagatga
     1621 ggctcggctt cgcggcggtc agctcggctg cgccgaggcc gtagccctgc atcacgccgg
     1681 cgcgcaggtt ctggatcaca gcgtcggcgc gatcgatgat gaggcgacgc aggcggccgg
     1741 cctcttccgg atcgccgaag ttcacggtga tgccggtctt gccgcggttg aggccgtgga
     1801 aggcggacgc ggtgccgttc cagaagggag ggccccagcc gcgggcgtag tcgccgcctt
     1861 tcgggttctc gaccttgatg acgtcggcgc cgagctcgga gaggatgagg ccggcgtacg
     1921 gagcggcgac gctgtggccg atctcgacga cggtaatccc cgcgaggggc ttggcgctcg
     1981 gcatggtcgg cttctggctt ccgcttgagt aaggtgcggg accatagaat gcctcgggag
     2041 gggggtcaat gaaacgttcc caaaggacgg ctgcgtgacg gcgacaacca tcagctgggc
     2101 ggcggaattc gccgtgctgg cgtcccgctt cgctgagcgc acagcggtta cggattcttg
     2161 cggccagacg acctacgccg agctgttccg cagggcggcg gggctcggcg agagcctcat
     2221 cgctgcaggc gtcacgcccg gcgaacccgt ggccaccttc ctgcgcaatg ggcggcccgc
     2281 gctctgggcg agcatgggcg tgacgataac gggcgccgcc gagacggccc tcaacccggg
     2341 tctcgggcag gccgaccggg agcactgcct tgccgtgtcg aaggcgcgcc acgtggtcac
     2401 gagcgccgcg cacgccgacc tgttccgccg accgggtct
//
LOCUS       DASQWN010000642         2370 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_876558, whole genome shotgun sequence.
ACCESSION   DASQWN010000642 DASQWN010000000
VERSION     DASQWN010000642.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2370)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2370)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2370
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_876558"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..306
                     /locus_tag="VE686_12060"
     CDS             <1..306
                     /locus_tag="VE686_12060"
                     /inference="COORDINATES: protein motif:HMM:NF014310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY85218.1"
                     /translation="IADLLAALSHAFAQAYEPWRAAQAQGRDAFGAVRQAWLARAAGI
                     GGPVTLRLPSGERQGAFRGLDASGRLQLETAAGLELIDAGDLYFAGLDTTSSAHLGA"
     gene            315..1991
                     /locus_tag="VE686_12065"
     CDS             315..1991
                     /locus_tag="VE686_12065"
                     /EC_number="3.1.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003598177.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0004540 - RNA nuclease activity [Evidence
                     IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease J"
                     /protein_id="HYY85219.1"
                     /translation="MADGQDELVFVPLGGLGEIGMNAALYGFGPPRNRKWILVDCGMG
                     FGGEEQLPGVDLVFPDLRFVESERDNLLGIIITHAHEDHIGALAELWPRLRVPVYATR
                     FAVGMLETKRLGEAGAPKVTLNEVKPGQRFQLGPFDIEYVPVAHSIPESNALAIRTAH
                     GLVVHTGDWKLDDTPFVGNTTSEAVFTGLGDEGVLALICDSTNVVREGRSPSESDVAK
                     RLGEIIAASPNRVAVTTFASNVARLRAVAEGARACGREVVVVGRAMDRVIAVARECGY
                     LDGIPEFRGADVFGYLPRDKVVALLTGSQGEPRAALARVADDEHPALALSPGDRVIFS
                     SRTIPGNERPVGRIINSLARRGIEVLTDRHDLVHVSGHPRRDELAAMYRWTRPRIGIP
                     AHGEDIHLAEHAAFAKAQGVPEVLTGVRNGTMVRIAPGPPKIIDNVPSGRLYKDGDLV
                     TPSSERAVPERRKLAVAGVVSVAIAIDSKGEVAGDPVIEVMGLPEKTRKGTLLVDLVA
                     DTVSDTVDGLSRQRRRDTQLVENAVDRAVRSAVNQVWGKKPACHVMVIEV"
     gene            2020..>2370
                     /gene="mce"
                     /locus_tag="VE686_12070"
     CDS             2020..>2370
                     /gene="mce"
                     /locus_tag="VE686_12070"
                     /EC_number="5.1.99.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007560728.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methylmalonyl-CoA epimerase"
                     /protein_id="HYY85220.1"
                     /translation="MIGRLNHVAIAVKDLARASAVYRDTLGGDVSAPVPHPEHGVTVV
                     FVTLPNTKVELLEPLGEGSPVAAFLERNAEGGIHHICYEVDDIRAAKDRLVAAGARVL
                     GSGEPKIGAHGKPVL"
BASE COUNT          355 a          876 c          804 g          335 t
ORIGIN      
        1 atagcggatc tccttgccgc actctcgcac gccttcgcgc aagcctacga gccctggcgc
       61 gccgcgcagg cgcaaggacg cgacgcgttc ggagccgtgc ggcaggcctg gctggcgcgg
      121 gcggccggga tcggcggccc cgtgaccctg cggctcccct cgggcgagcg ccagggcgct
      181 tttcgcgggc tcgacgcctc cgggcgtctt cagctcgaga cggccgccgg cctggaactc
      241 atcgacgccg gcgatctcta cttcgcgggc ctcgacacca cctcgtcggc ccatctgggc
      301 gcataggaga attcatggcg gacggccaag acgagctcgt gttcgtgccc ctcggcggcc
      361 tcggggagat cggcatgaac gcggcgctgt acggcttcgg gccgccacgg aaccgcaagt
      421 ggatcctcgt cgactgcggc atgggtttcg gcggcgagga gcagctcccc ggcgtcgacc
      481 tcgtgtttcc cgatctgcgc ttcgtcgaga gcgagcgcga caacctcctc ggcatcatca
      541 tcacgcacgc gcacgaggat cacatcggcg cgctggccga gctgtggccg cgcctccgcg
      601 tgcccgtcta tgcgacgcgg ttcgccgtcg gcatgctcga gaccaagcgc ctcggcgagg
      661 cgggagcgcc gaaggtcacg ctcaacgagg tcaagccggg ccagcgcttc cagctcgggc
      721 ccttcgacat cgagtacgtg ccggtcgccc actcgatccc ggaatcgaac gcgctcgcca
      781 tccgcacggc gcacggcctt gtggtgcaca ccggcgactg gaagctcgac gacacgccct
      841 tcgtcggcaa caccacctcc gaggccgtgt tcaccggcct cggcgacgag ggcgtgctcg
      901 cgctcatctg cgactccacc aacgtggtgc gcgagggccg cagcccaagc gagagcgatg
      961 tcgccaagcg gctgggcgag atcatcgccg cgtcgcccaa ccgggtcgcc gtcacgacct
     1021 tcgcgtccaa cgtcgcccgc ttgcgcgccg ttgccgaagg tgcgcgcgcc tgcggccgcg
     1081 aggtcgtcgt cgtcggacgc gccatggacc gcgtgatcgc cgtcgcccgc gagtgcggct
     1141 atctcgacgg catccccgaa ttccgcggcg ccgacgtgtt cggctacctc ccgcgcgaca
     1201 aggtcgtggc gctgctcacc ggctcgcagg gcgagccccg cgccgcgctc gcccgcgtcg
     1261 ccgacgacga gcacccggcg ctcgcgctgt cgccgggcga cagggtgatc ttctcgtcgc
     1321 gcaccatccc cggcaacgag cgcccggtcg ggcgcatcat caactcgctc gcccggcgcg
     1381 gcatcgaggt gctcacggac aggcacgacc tcgtgcacgt ctccggccac ccgcgccggg
     1441 acgagctcgc cgccatgtac cgctggaccc ggccgcgcat cggcattccg gcgcacgggg
     1501 aagacatcca ccttgccgag cacgccgcct tcgccaaggc tcaaggcgtg ccggaggtgc
     1561 tgacgggagt gcgcaatggg acgatggtgc gcatcgcgcc cggcccccct aagatcatcg
     1621 acaacgtgcc gtcagggcgc ctgtacaagg acggcgacct cgtcacaccg tcgagcgagc
     1681 gcgccgtgcc ggagcggcgc aagctcgccg tcgcgggcgt ggtgtccgtc gccatcgcca
     1741 tcgacagcaa gggcgaggtc gccggcgacc ccgttatcga ggtcatgggc ctgcccgaga
     1801 agactcgcaa gggaacgctc ctcgtcgacc tcgtcgccga tacggtctcg gacaccgtgg
     1861 acggcctctc gcggcagagg cgccgcgaca cccagctcgt cgagaacgcc gtcgaccgcg
     1921 cggtgcgctc ggccgtgaac caggtctggg gcaaaaagcc cgcctgtcac gtcatggtca
     1981 tcgaggtatg accgccaagg tacgcccgag gggacaacca tgatcggccg cctcaaccat
     2041 gtcgcgatcg cagtgaagga cctcgcgcgg gcgagcgccg tataccgcga cacgctgggc
     2101 ggcgacgtct cggcgcccgt gccgcacccg gagcacgggg tcacggtcgt cttcgttacc
     2161 ctgccgaaca ccaaggtcga gcttctcgag cccttgggcg agggctctcc cgttgccgcg
     2221 ttcctggagc gcaacgccga aggcggcatc caccacatct gctacgaggt cgacgacatc
     2281 cgcgccgcaa aggaccggtt ggtcgcggcg ggtgcgcgcg tgctcgggag cggggagccc
     2341 aagatcggcg cccacggcaa gcccgtgctg
//
LOCUS       DASQWN010000643         2672 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_362591, whole genome shotgun sequence.
ACCESSION   DASQWN010000643 DASQWN010000000
VERSION     DASQWN010000643.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2672)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2672)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2672
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_362591"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..584)
                     /locus_tag="VE686_12075"
     CDS             complement(<1..584)
                     /locus_tag="VE686_12075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015951685.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid II flippase MurJ"
                     /protein_id="HYY85221.1"
                     /translation="MLGRIVSVGGWTLVSRITGFFRDVVIAATMGAGPVADAFVVALR
                     LPNHFRAIFGEGAFNNAFIPTYARVLEAGGAAPARTFADRIFTLMLIVQLAILVPALA
                     GMPWLIELLAPGFSADPAKFDLAVTLTRITFPYLLFVTLVTLLSGVLNAHRRFAAAAG
                     APVLLNVSLIAALAVAYLFPTAGHAAAWGVAVAGV"
     gene            complement(591..1583)
                     /locus_tag="VE686_12080"
     CDS             complement(591..1583)
                     /locus_tag="VE686_12080"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020175463.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HYY85222.1"
                     /translation="MAASNIELSVVIPVYNEELGIAPLCERLTPVLDRITPVWEVVFI
                     DDGSSDGTLATVRARSAGEPRIGAVSFSRNFGKEIAIAAGLDHARGRAVVIMDADLQH
                     PPELIETFVARWREGYVMVYGQRTSRSDEGPVKRGFARLFYRLFRRFGETPLPEGAGD
                     FRLIDRKGVEVLRELHERARFSKGLYAWIGFKSMGVPFVVEERRTGVTKWSFRKLFRF
                     AFDGITAFSTVPLRVWTYVGGFVSAASIVTALYFTIRTLLFGADVPGYPSLIVSVMFF
                     SGIQLMSLGIVGEYIGRIFAEVKRRPLYVVSERIGATRDVADDLVRDDRRTARA"
     gene            complement(1728..2327)
                     /locus_tag="VE686_12085"
     CDS             complement(1728..2327)
                     /locus_tag="VE686_12085"
                     /EC_number="1.15.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012321416.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004784 - superoxide dismutase activity
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="superoxide dismutase"
                     /protein_id="HYY85223.1"
                     /translation="MSFTLPDLPYAYDALQPYMSRETLEFHHDKHHKAYVDTGNKLME
                     GTEFEGKSVEEVVKGSHGVNQALFNNAGQHYNHLHFWQWMKPNGGGNIPGSLERKIAE
                     DLGGTDKFKQDFIQAGVTQFGSGWAWLAVKDGRITVMKTPNGENPLVHGAKPILGCDV
                     WEHSYYIDYRNRRPDYLKAFLDNLVNWEHVERMYQEASR"
BASE COUNT          473 a          839 c          942 g          418 t
ORIGIN      
        1 acaccggcca cggcgacgcc ccaggcggcg gcgtgcccgg ccgtcgggaa caggtatgca
       61 accgccaggg cggcgatgag ggacacgttc aggagcaccg gcgcgccggc cgccgccgcg
      121 aaacgtctat gtgcgttgag gacgcccgac aggagcgtca ccagcgtgac gaagaggaga
      181 tacgggaacg tgatgcgcgt cagcgtcacc gcgaggtcga acttcgccgg atcggctgag
      241 aagcccggcg cgaggagctc gatgagccac ggcattcccg cgagggccgg gacgaggatc
      301 gcgagctgca cgatcagcat gagggtgaag atgcggtcgg cgaacgtgcg ggcgggcgcc
      361 gcccctccgg cctcgagcac gcgcgcgtag gtcgggatga aggcgttgtt gaacgcaccc
      421 tcgccgaaga tcgcgcggaa gtggttcggc aagcgcagcg cgacgacgaa ggcatccgcg
      481 acggggccgg cgcccatcgt cgcggcgatc accacgtccc ggaagaagcc ggtgatgcgc
      541 gagacgagcg tccagcctcc gaccgagacg atcctgccca gcatggggcc tcaggctcga
      601 gccgtgcggc ggtcgtcgcg gacgaggtcg tcggcaacgt cgcgcgtcgc gccgatccgc
      661 tcggagacga cgtagagggg ccgacgcttc acctcggcga agatgcggcc gatgtactcc
      721 ccgacgatgc cgagcgacat cagctgaatg cccgagaaga acatcacgga gacgatgagc
      781 gaagggtagc cgggcacatc ggcgccgaag agcagcgtcc ggatcgtgaa atagagcgcc
      841 gtgacgatgg aagccgccga gacgaagccg ccgacgtaag tccaaacgcg cagtggcacc
      901 gtcgagaagg cggtgatgcc gtcgaaggca aagcggaaca gcttgcggaa gctccacttc
      961 gtcacgccag tgcggcgctc ctcgacgacg aacgggacac ccatcgattt gaatccgatc
     1021 caggcataga ggcccttcga gaagcgcgcg cgctcgtgca gctcgcggag cacctcgacg
     1081 cccttgcgat cgatgaggcg gaagtcaccg gctccctccg gcagaggcgt ctctccgaag
     1141 cgccggaaca ggcgatagaa cagccgcgcg aagccccgct tgacggggcc ctcgtcggag
     1201 cggctggtgc gctggccgta gaccatgacg tagccctcgc gccaccgcgc cacgaaggtc
     1261 tcgatcagct cgggcgggtg ctgcaggtcg gcgtccatga tcacgacagc ccggccccga
     1321 gcgtggtcga ggcccgccgc gatcgcgatc tccttgccga agttccggct gaacgacacc
     1381 gccccgatgc gcggctcgcc cgcgctgcgc gcccggaccg tggcgagcgt gccgtcgctc
     1441 gagccgtcgt cgatgaagac cacttcccat acgggcgtga tgcggtcgag aacgggcgtc
     1501 agccgctcgc acagaggggc gatgccgagt tcctcgttgt agaccgggat gacgacgctg
     1561 agctcgatgt tcgaggcggc cacggaggcg tccttgtcgg tgggggcagc agacccgagt
     1621 ttgcccgcgc actcaagacc ggggcaggcc gggtaggcgt agacccgtgc cctcaaaagc
     1681 gaaacggggc cgtgaggccc cgtcgcatta cgagaagaag cgtcggctta gcggctcgcc
     1741 tcctggtaca tgcgctcgac gtgctcccag ttgacgagat tgtcgaggaa cgccttgaga
     1801 tagtccggcc ggcggttgcg ataatcgatg tagtaggaat gctcccagac gtcgcagcca
     1861 aggatgggct tcgcgccatg cacgagcggg ttctcgccgt tcggcgtctt catcaccgtg
     1921 atgcggccat ccttcacggc gagccacgcc cagcccgatc cgaactgggt cacgcccgcc
     1981 tggatgaagt cctgcttgaa tttgtccgta ccgccgaggt cctcggcgat cttgcgctcg
     2041 agcgaacccg gaatgttgcc gccgccgttc ggcttcatcc actgccagaa gtggaggtgg
     2101 ttgtagtgct ggcccgcgtt gttgaagagc gcctgattga cgccgtgaga gcctttgacg
     2161 acctcctcga cgctcttgcc ctcgaactcg gtgccttcca tcagcttgtt gccggtgtcg
     2221 acgtaggcct tgtggtgctt gtcgtggtga aactcgaggg tctcgcgcga catgtacggc
     2281 tgcagggcgt cgtaagcata gggcaggtcg ggcagggtga acgacatcga cgtctcctcg
     2341 gatgatcggc ggcagggcct cgggggtagt cacccggatc aatagatcgg cccttgccgg
     2401 acggcaacgc tccccggtgc cgccggttgc aaacgggcgc tgaaacttta gggttcggag
     2461 cctgttaggt tgcagggcgg ttgggtgaga catggtcttg gcgttgtatg tggtcgcggg
     2521 cgtgatggtc gccggagggc tcctggcgat ctattcgggc tccgacatca tcgtcatgga
     2581 acgcggctgg actatggtga tctccggcag cgtgatggcc gccagcggcg ccctgctcgc
     2641 cgggatcgcc accgcggtgg cccggattca ga
//
LOCUS       DASQWN010000644         2052 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_278855, whole genome shotgun sequence.
ACCESSION   DASQWN010000644 DASQWN010000000
VERSION     DASQWN010000644.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2052)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2052)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2052
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_278855"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..280)
                     /locus_tag="VE686_12090"
     CDS             complement(<1..280)
                     /locus_tag="VE686_12090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009490678.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="apolipoprotein N-acyltransferase"
                     /protein_id="HYY85224.1"
                     /translation="MTFLAQRVILAWGWSRALIAFAAGVVGALAMPPFGALPALAVSL
                     SVVVWLIDGAAAGPRQHAAWSAAAAGWCWGFGYFVAGLWWLGAAFLVEA"
     gene            complement(277..1329)
                     /locus_tag="VE686_12095"
     CDS             complement(277..1329)
                     /locus_tag="VE686_12095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009490677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hemolysin family protein"
                     /protein_id="HYY85225.1"
                     /translation="MSEDRSREERPDRIEPGVRDPWYERLLHLVHVRSRESIRHDLED
                     ALAEADEDRTFSPQERAMLKNVLNLHRLRIDDVMVPRADVVAVPAEATLGQLLGLFRT
                     AAHSRLPVYGETLDDPKGMVHIRDFLDFLSARAQSDAADEAQNAVSDLGKVDLSITLA
                     AAQIWRPVLFVPPSMPAMDLLVRMQATRTHMALVIDEYGGTDGLVSIEDLIEMVVGDI
                     EDEHDVDDARMIVKADETWVVDARASLEEVAEATGAPIAAGDLADEVDTVGGLVVTLA
                     GRVPSRGELIAGPADLEFEVLDADPRRVKRVRIHSRPGGQPGDDAARAGARPKGGAPA
                     GPIAASENPDRDIPRA"
     gene            complement(1361..1837)
                     /gene="ybeY"
                     /locus_tag="VE686_12100"
     CDS             complement(1361..1837)
                     /gene="ybeY"
                     /locus_tag="VE686_12100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009490676.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004540 - RNA nuclease activity [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0042254 - ribosome biogenesis [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="rRNA maturation RNase YbeY"
                     /protein_id="HYY85226.1"
                     /translation="MIDVDVLVLDERWAEIGDAEAVARLSVEAALSVVAEVPPGDVEV
                     SVALADDATVQALNRDWRSKDDPTNVLSFPAPPTRTPGPRILGDIALAYETVARESRD
                     ENKLLADHAVHLLVHGTLHLLGYDHECDSDAAVMEALEIEALARVGVADPYRGVAA"
     gene            complement(1834..>2052)
                     /locus_tag="VE686_12105"
     CDS             complement(1834..>2052)
                     /locus_tag="VE686_12105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012332987.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PhoH family protein"
                     /protein_id="HYY85227.1"
                     /translation="EGSRMIVTGDPTQIDLPPGQKSGLIEAGRILDGVEGIARVVFRE
                     GDVVRHDLVRRIVTAYDAATRASPEERR"
BASE COUNT          350 a          722 c          669 g          311 t
ORIGIN      
        1 ccgcctcgac gaggaatgcc gcgccgagcc accacagccc agcgacgaag tagccaaacc
       61 cccagcacca cccggccgct gccgccgacc aagctgcgtg ctgccgaggc cccgccgccg
      121 cgccgtcaat gagccacacg acgacggaca acgacacagc caaagccggc agagcgccga
      181 acggcggcat ggcgagggct ccaacgacgc cggccgcaaa ggcgatcagc gcgcgcgacc
      241 atccccaggc gaggatgacg cgttgggcaa ggaacgtcat gcccgcggga tgtcccgatc
      301 cgggttttcg cttgcggcga tcggccccgc tggagctccg cctttcggac gagcgcccgc
      361 ccgtgccgcg tcgtctccag gttggccgcc gggacggcta tggattcgta cgcgcttgac
      421 ccggcgtgga tcggcatcga gaacctcgaa ctcgagatcc gccgggcccg cgatcaactc
      481 gccccgagag ggcacgcgcc ccgcaagcgt caccacaagc ccgcctacgg tatcgacttc
      541 gtcggcgagg tcccccgcgg caatcggggc gcctgtcgcc tctgcgacct cctcgaggct
      601 cgcccgagcg tcgacaaccc atgtctcgtc cgccttgacg atcatgcgcg cgtcgtcgac
      661 gtcgtgctcg tcctcgatat ccccaacgac catctcgatg aggtcctcga tcgagacaag
      721 cccatccgtg ccgccgtact cgtcgatgac gagggccatg tgggttcgcg tggcttgcat
      781 ccgcacgagc aggtccatcg cgggcatcga gggcggcaca aacagcaccg gacgccaaat
      841 ctgcgccgcc gcgagggtga tggaaagatc gaccttcccg aggtccgaga ccgcattctg
      901 tgcctcgtcg gcagcgtctg actgcgcgcg cgcagagagg aaatcaagaa agtcgcggat
      961 gtggaccatt cccttcggat cgtcgagcgt ctcgccgtag accggcaacc gggaatgtgc
     1021 ggccgtgcgg aaaagcccaa ggagctggcc gagcgtcgct tctgccggga ccgccaccac
     1081 gtcggcgcgc ggcaccatga cgtcgtcgat ccgcagccgg tgcaggttga ggacgttttt
     1141 gagcatcgcg cgctcttgcg gcgagaacgt gcgatcctcg tctgcctccg cgagtgcgtc
     1201 ctcgaggtcg tggcggatcg attcgcgcga gcggacgtgg acgaggtgca aaaggcgctc
     1261 gtaccacggg tcgcgcacgc cgggctcgat gcggtcgggg cgctcctcgc gacttcgatc
     1321 ttcgctcatg cggagacaac catcggagtg cgacccggct tcaagcagcc acgccgcgat
     1381 acggatcggc gaccccgact cgcgccaaag cctcgatctc gagagcctcc atcacggccg
     1441 cgtcgctgtc gcattcgtga tcgtagccca gaagatgcag cgtcccatgc accaggaggt
     1501 gcacggcatg gtcggctaag agcttgttct catctcggct ctcgcgcgcg acggtttcgt
     1561 aggcaagcgc aatgtcgccc aggatccgcg ggcccggcgt cctcgtcggg ggagccggga
     1621 aggagagaac gttggtcggg tcatccttgc tgcgccaatc gcggttcagg gcctgaacgg
     1681 tggcatcgtc agccagcgcc acgctgacct cgacgtcgcc cggcggcacc tcggccacga
     1741 ccgagagcgc cgcctcgacg ctgaggcggg caacggcctc ggcatcgccg atttcggccc
     1801 agcgctcgtc aaggacaagc acgtcgacgt cgatcaccgg cgctcctcgg ggctcgcgcg
     1861 agttgccgcg tcgtacgccg tgacgatgcg gcggacgagg tcgtgcctga ccacgtcgcc
     1921 ttcccggaat acgactcggg caattccctc cacaccatcg aggatgcgtc cggcctcgat
     1981 caggccggac ttctgaccgg gcggcaggtc gatctgagtc gggtcgcccg tgacgatcat
     2041 gcgagagccc tc
//
LOCUS       DASQWN010000645         2250 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_877744, whole genome shotgun sequence.
ACCESSION   DASQWN010000645 DASQWN010000000
VERSION     DASQWN010000645.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2250)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2250)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2250
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_877744"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..576
                     /locus_tag="VE686_12110"
     CDS             <1..576
                     /locus_tag="VE686_12110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012453516.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phenylalanine--tRNA ligase subunit beta"
                     /protein_id="HYY85228.1"
                     /translation="AFDAKSDAMALLSALNVPLAGVQVMPGGPAWLHPGRSGTLQFGP
                     KVVVGAFGEVHPKVLRALDVKGPLVAFEITLDLLPPAKARPTKIKPKLTLSDLQPLTR
                     DFAFVVGRDVAAGDIVRAAQAAERQLVTGVEVFDVYEGAGIDPAKKSVAIAVTLQPTQ
                     KTLTEAEIEAVSAKIVAEVAKKTGAALRSGS"
     gene            complement(573..2036)
                     /locus_tag="VE686_12115"
     CDS             complement(573..2036)
                     /locus_tag="VE686_12115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018263011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY85229.1"
                     /translation="MFREHLGGGPAIAAPLSREPGALSWIGVAPNAPYFVTDAGEPWT
                     PIGHNDAISWESLKGLYGRRDLPGTEAYLQGLADSGVTCIRLMMEYAQSRHRYFERPL
                     GTFVPRMVQLWDDLFAICERLGLRILLTPFDTYWTWLHWRHHPYNRANGGVLDRPSRL
                     LLCPQTRDAIKARLAFAARRWGGSGALFAWDLWNEIHPAQAGDTAECFGEFIEDLADS
                     VRTVEERLYGRAHPQTVSLFGPELRWRPHMRLEEPIFRHPALQFATIHIYEQGTIDHP
                     RNTVDPAIGMGRIVRRALAEIRDGRPFLDTEHGPIHAYKDRKRPLSEAFDDEYFRHTQ
                     WAHLAAGGAGGGMRWPNRTPHVLTSGMRRTQKALAAFLPLIDWTRFRRVNLNDEIAVS
                     TPRIACFASGDATQAVVWLLRRDTVAPNGMLRQDTAPIAATLRVPRLAEGDYTIVAFD
                     TRAGSEVARYPARARSDGLTLLTPPFVADLALAIRPG"
BASE COUNT          348 a          747 c          821 g          334 t
ORIGIN      
        1 gccttcgatg ccaagtcgga cgccatggcg ctcctctccg ccctcaacgt gccgctcgcc
       61 ggcgtccagg tcatgccggg cggcccggcg tggctccacc cgggccggtc gggaaccctg
      121 cagttcgggc ccaaggtcgt cgttggcgct ttcggcgagg tgcatccgaa ggtgctgcgc
      181 gcccttgacg tcaaggggcc gctcgtcgcg ttcgagatca ccctcgacct gctgccgccg
      241 gcgaaggcgc ggccgacgaa gatcaagccg aagctcaccc tctcggattt gcagccgctc
      301 acccgcgact tcgccttcgt ggtcggccgc gacgtggccg cgggtgacat cgtgcgggcg
      361 gcacaagccg ccgagcgcca gctcgtgacg ggcgtcgagg tgttcgacgt ctacgagggc
      421 gccggcattg acccggccaa gaaatcggtc gccatcgccg tcacccttca gccgacgcag
      481 aagaccctga cggaagccga gatcgaggcc gtctcggcca agatcgtcgc cgaagtagcg
      541 aagaagacgg gggcggccct acgcagcggt agctaacccg gtcggatcgc cagggcgagg
      601 tctgcgacaa agggcggcgt gaggagcgtc agaccgtcgc tccgcgcccg ggccggataa
      661 cgggcgacct cgctgcctgc tcgcgtatcg aacgccacga tcgtgtagtc cccctcggca
      721 aggcgcggca cgcgcaaggt cgcggcgatc ggcgccgtgt cctgacgcag catgccgttc
      781 ggcgcgaccg tgtcccgccg cagcagccag accactgcct gggtggcgtc gccggaagcg
      841 aagcatgcga tccggggcgt cgacaccgcg atctcgtcgt tcaggttcac gcgccggaag
      901 cgcgtccagt cgatcagcgg caggaaggcg gcgagcgcct tctgggtccg ccgcatgccg
      961 gacgtgagca cgtggggcgt gcggttgggc cagcgcatgc cgccgccggc gccgccagca
     1021 gccaggtgcg cccattgcgt gtggcggaag tactcgtcgt cgaaggcctc cgagagcggc
     1081 cgcttgcggt ccttgtaggc gtggattggc ccgtgctcgg tatcgaggaa ggggcggccg
     1141 tcgcggatct cggcgagcgc gcgtcgcacg atgcggccca ttccaatggc ggggtcgacc
     1201 gtgttgcgcg ggtggtcgat ggtgccctgc tcgtagatgt ggatcgtcgc gaactgcagg
     1261 gccgggtggc ggaagatcgg ctcctcgagc ctcatgtgcg ggcgccagcg caactcgggg
     1321 ccgaacagcg agacggtctg cggatgcgct cgcccgtaga ggcgctcctc cacggtgcgg
     1381 acagagtccg cgaggtcctc gatgaactcg ccgaagcact ccgccgtgtc gcccgcctgc
     1441 gccggatgga tctcgttcca cagatcccag gcgaacagcg cgcccgagcc gccccagcgc
     1501 ctcgccgcga aggcaagtcg tgccttgatg gcgtcgcgcg tctgcggaca gagcagcagg
     1561 cgcgacgggc ggtcgagcac gccgccgttg gcgcggttat acggatgatg gcgccagtgc
     1621 agccatgtcc agtaggtgtc gaacggcgtg agcaggatgc gcagcccgag gcgctcgcag
     1681 atcgcgaaga ggtcgtccca cagctgcacc atgcgcggca cgaaggtgcc gagcggccgc
     1741 tcgaagtagc ggtggcgcga ctgcgcgtac tccatcatga gccggatgca ggtcacgccg
     1801 ctgtcggcga gaccctggag gtacgcttcc gtcccgggaa gatctcgccg gccgtagagg
     1861 cccttcagag actcccagct gatcgcgtcg ttgtggccga tcggcgtcca gggctccccc
     1921 gcgtcggtga cgaagtacgg cgcgttcggg gcgacgccga tccacgacag agcgccgggc
     1981 tcgcgactga gcggcgccgc gatcgctgga ccgccgccga ggtgctctct gaacattggg
     2041 gaccgggaac tcagggcagg cacttggaat gtccgcaaac tcacgaggcc gcgaaatggt
     2101 tgcgcgggtc cggacgcgcg aaatcccccc ggggctccgg ggcgggtttg gcagaaggtt
     2161 taaagagcgg gagttctcag tctcctcccg gtgaggggag gtgggacgcg gtggcccggc
     2221 aggtcttggc ctaaacgccg ggcatgaccg
//
LOCUS       DASQWN010000646         2375 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_278970, whole genome shotgun sequence.
ACCESSION   DASQWN010000646 DASQWN010000000
VERSION     DASQWN010000646.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2375)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2375)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2375
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_278970"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..799)
                     /locus_tag="VE686_12120"
     CDS             complement(<1..799)
                     /locus_tag="VE686_12120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012322308.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003678 - DNA helicase activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DnaB-like helicase N-terminal domain-containing
                     protein"
                     /protein_id="HYY85230.1"
                     /translation="MMAANALVARLEAVTPEYRVAPNNIDAEQALLGAILVNNDAYYR
                     VSDFLEAGHFFEELHRRIYEVATSLIKAGKVATPITLKTFLGDQDLGGVTVSQYLARL
                     AGEATTVINAQDYGRTIYDLAVRRSLIGIGEELVNEAYDSPVESSPRDQIEEAERRLY
                     ELAETGRYDGGFQRFADALTGAIDMAAAAFKREGKLSGIATGLKDLDRIMGGMQQSDL
                     VILAGRPGMGKTALATNIAFNAAKSYRATRAATGELEVEDGAVIGFFS"
     gene            complement(924..1349)
                     /locus_tag="VE686_12125"
     CDS             complement(924..1349)
                     /locus_tag="VE686_12125"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY85231.1"
                     /translation="MALGTALDRDDARRPAQARLRRRVPYPISDLPAELKTEKLLLFC
                     EGRSAGWHLGAWSDGTWRAVENPDQTLEPTHFALASGLESEGGRWRHATPHRRAILSV
                     IGVAGAAFLAMVAIGQVAYGDPWALCSPTRDGVAAITTP"
     gene            1471..>2375
                     /locus_tag="VE686_12130"
     CDS             1471..>2375
                     /locus_tag="VE686_12130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018273360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HYY85232.1"
                     /translation="MAREFIYHMRGLSKTYPGGRKVLENVHLSFYPDAKIGVLGVNGA
                     GKSTLLRIMAGIDKEWTGEGWVAEGARVGYLPQEPQLNPAKNVRENVEEGVAPQKAIL
                     ERYNELAMNYSDETADEMTALQDEIEAKGLWDLDSKVEQAMDALGCPPDDWTVERLSG
                     GEKRRVALCKLLLEQPELLLLDEPTNHLDAETTAWLEGHLRSYPGAILIVTHDRYFLD
                     NVTSWILELDRGRGIPYEGNYSSWLGQKQKRLAQEGREEAAHQRTIAREQEWIAASPK
                     ARQAKSKARYQRYEDLVKQAAEKQT"
BASE COUNT          394 a          797 c          831 g          353 t
ORIGIN      
        1 gcgagaagaa gccgatcacg gcgccgtcct cgacctcgag ctcgccggtg gcggcgcgcg
       61 tcgcgcggta ggatttcgcg gcgttgaagg cgatgttggt ggcgagcgcc gtcttgccca
      121 tgcccgggcg gccggcgagg atcacaaggt cggactgctg catgccgccc atgatgcggt
      181 cgaggtcctt cagccccgtg gcgatgcccg acagcttgcc ttcgcgcttg aaggcggccg
      241 ccgccatgtc gatggcgccc gtgagcgcgt cggcgaaacg ctggaagccg ccgtcgtagc
      301 ggcccgtctc ggcgagctcg tagagccggc gctcggcctc ctcgatctgg tcgcgcggcg
      361 aggactcgac gggcgaatcg taggcctcgt tgacgagttc ctcgccgatg ccgatcaggc
      421 tgcggcggac ggcgagatcg tagatcgtgc gcccgtagtc ctgggcgttg atgaccgtcg
      481 tcgcctcgcc ggcgaggcgc gccaggtact gcgagacggt gacgccgccg aggtcctggt
      541 cgcccaggaa ggtcttgagg gtgatcgggg tcgcaacctt gccggccttg atgaggctcg
      601 tcgccacctc gtagatgcgc cggtgcagct cctcgaagaa gtggcccgcc tcgaggaagt
      661 ccgacacgcg gtagtaggcg tcgttgttga cgaggatcgc cccgagcagc gcctgctcgg
      721 cgtcgatgtt gttcggcgcg acgcggtatt ccggcgtgac ggcttcgagg cgggcgacga
      781 gagcgttggc ggccatcagg ggtccgaatc agttggggcg acgcccctgt catacgcggt
      841 ctctttaact tggcgccgcg atcattgccg catccttgca ttccccgctg atcacagggg
      901 cagggccagc gcttctcgct gcgctagggt gtggtgatcg cggcgacccc gtcccgggtc
      961 ggggagcaca gcgcccaggg gtcgccgtag gcgacctggc cgatggccac catggcgagg
     1021 aaggcggctc cggcgacgcc gatgaccgag aggatcgcgc gccggtgcgg cgtcgcgtgg
     1081 cgccagcgtc cgccctcgct ttcgaggccg ctcgcgagcg cgaaatgcgt cggttcgagc
     1141 gtctggtcgg ggttctcgac cgcgcgccac gtcccgtccg accaagcgcc gaggtgccag
     1201 ccggcagatc tgccctcgca gaacagaagc agcttctcgg tcttcaactc cgccggcagg
     1261 tccgagatcg gatacggcac gcgccgccgc agccgcgcct gggccgggcg gcgggcgtca
     1321 tctcggtcga gggcggttcc gagtgccatg ccgccaccct acacgatcgc ccgatccgtg
     1381 cacgcgccgg agcgccgcgc ttgccgcccc cgcgcgccgc tggtaaccgg ggcgccaaat
     1441 ccggacatcg cgagccttag gagcccttca gtggcccgag aattcatcta ccacatgcgt
     1501 gggctgtcga agacctatcc gggcggccgg aaggttctcg agaacgtcca cctgtcgttc
     1561 tacccagacg ccaagatcgg cgtgctcggc gtcaacggcg ccggcaagtc gacgctcctg
     1621 cgcatcatgg ccggaatcga caaggagtgg accggcgaag gctgggtcgc cgagggggcc
     1681 agggttggct atctcccgca ggagccgcag ctcaacccgg ccaagaacgt gcgcgagaac
     1741 gtcgaagagg gcgtcgcgcc gcagaaggcg atcctcgagc gctacaacga gctcgccatg
     1801 aactactcgg acgagaccgc ggacgagatg accgcgctcc aggacgagat cgaggccaag
     1861 gggctgtggg atctcgactc gaaggtcgag caggccatgg acgcgctcgg ctgcccgccc
     1921 gacgactgga ccgtcgagcg gctctcgggc ggcgagaagc gccgcgtcgc actgtgcaaa
     1981 ctcctcctcg agcagcccga gctcctgctc ctcgacgagc cgaccaacca cctcgacgcc
     2041 gaaacgacgg cgtggctcga gggccacctg cgcagctatc cgggcgccat cctgatcgtc
     2101 acccacgacc gctacttcct cgacaacgtg acgagctgga tcctcgagct cgaccgcggg
     2161 cggggcattc cgtacgaggg caattactcg tcctggctcg ggcagaagca gaagcggctc
     2221 gcgcaggagg gccgcgaaga agccgcccat cagcgcacga tcgcgcgcga gcaagaatgg
     2281 atcgcggctt cgcccaaagc acgacaagcc aaatcgaagg cgcgctatca acgctacgaa
     2341 gacctagtga agcaggcggc cgagaagcag acgca
//
LOCUS       DASQWN010000647         2253 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_978393, whole genome shotgun sequence.
ACCESSION   DASQWN010000647 DASQWN010000000
VERSION     DASQWN010000647.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2253)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2253)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2253
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_978393"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(302..1780)
                     /locus_tag="VE686_12135"
     CDS             complement(302..1780)
                     /locus_tag="VE686_12135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015667228.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdiU family protein"
                     /protein_id="HYY85233.1"
                     /translation="MRMHFPFDNTYAHLPDRFFARLPPTSVAAPKLVRLNRQLAVQLS
                     LDPDWLSSSEGVEVLAGRRVPSGAEPIAMAYAGHQFGHFVPQLGDGRAILLGEVVDQD
                     GVRRDIQLKGSGPTPFSRRGDGRAALGPVLREYVVSEAMAALGIPTTRALAAVTTGET
                     VMRETSLPGAVLTRVASSHIRVGTFQFFAARGDVEGVRLLADYVIARHYPEASHVEQP
                     YRTLLDRVIARQADLVAQWLLVGFIHGVMNTDNTSISGETIDYGPCAFMDAYDPATVF
                     SSIDRFGRYAYANQPRIAQWNLARLAEALLPLLAENQEKAVAEAQEALEAFPALFATA
                     LRAGLGRKLGLFTQQDDDPSLAQDLLDRMAENQADFTLTFRRLSDAAADASSDAAVRE
                     LFADPSAYDGWALRWRQRLDQEPQADVARRAMMRSVNPAFIPRNHRVEAMIAAAVERH
                     DFSPFDELLAVLSKPYDDQPAFARYAEPPEPHERVNRTFCGT"
     gene            complement(2040..>2253)
                     /locus_tag="VE686_12140"
     CDS             complement(2040..>2253)
                     /locus_tag="VE686_12140"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY85234.1"
                     /translation="LLGLPTRPNNDRLWMNWAMHWGQGIALGAVRAFMAGRGFRGPVG
                     SFLFLNQRLLNDQTLENTTGVGAPWT"
BASE COUNT          413 a          730 c          729 g          381 t
ORIGIN      
        1 ccgtcaagca cccgacgctg cagaagttcc tccccgctca cgtcctgccg atctctcgcc
       61 gcaccgcacc cgctcgctgc agcgtggcca gggaggcccg gccagccgtt ctgcatcagg
      121 tcacgaacga acatcgacgc cgggtcaaac tgcgaaactt catcactcac ctcgtgaagc
      181 ccaagcgatc tgagcgagga cggggctgac gcccacagaa ggaactctca tcctcagctg
      241 gcgggagggt tggagtgata gcggtgctgg cgagaacagg ctccggcgca tcaccgcgcc
      301 attacgtgcc gcagaaggtc cggttgaccc gctcgtgcgg ctcgggcggc tcagcgtaac
      361 gggcaaaggc cggctggtca tcgtagggct tcgacagcac cgccagaagc tcgtcgaagg
      421 gagaaaaatc atgccgctcc accgcggccg cgatcatggc ttcgacccgg tgattgcgcg
      481 ggatgaaggc cgggttgacc gagcgcatca tcgcgcgtcg cgccacgtcg gcctgcggct
      541 cctgatccag ccgctgacgc cagcgcagag cccatccatc gtaggcggac ggatcggcaa
      601 acagctctcg gacagcagcg tcgctggaag catctgcggc ggcgtcgctc aggcgccgga
      661 acgtgagtgt gaaatcggcc tggttctcgg ccatcctgtc caggagatcc tgtgccagcg
      721 acggatcatc atcctgttgc gtgaataggc cgagcttccg accgagccca gcgcgaaggg
      781 cagtcgcgaa caatgccgga aatgcttcca gtgcctcctg ggcctcggcg acggccttct
      841 cttggttctc ggccagaagc ggcagtaggg cttccgccag tcgggcaagg ttccattgag
      901 cgatgcgcgg ctggttggcg taggcgtagc ggccgaaccg atcaatcgag ctgaacacgg
      961 ttgcgggatc atacgcatcc atgaaggcgc atgggccgta gtcgatcgtc tcgcccgaga
     1021 tcgacgtgtt gtcggtgttc atgaccccat gaatgaagcc gacgagcagc cattgcgcga
     1081 cgaggtcggc ctgacgcgcg atgacccggt ccaggagcgt ccgatagggt tgttcgacgt
     1141 gcgatgcttc cggatagtgt cgtgcgatga cgtaatccgc aagcagcctg acgccttcaa
     1201 catcgccgcg cgcggcaaag aactgaaatg tgccgacccg gatgtggctg gacgccaccc
     1261 gcgtgagaac cgcaccgggc agcgatgtct cgcgcatgac tgtctcgccg gttgtcaccg
     1321 ccgcgagggc acgcgtggtc ggaattccaa gtgccgccat ggcctcgctg acgacgtact
     1381 cgcgcaggac cgggccgagc gccgcgcgcc cgtcgccgcg ccgcgagaac ggcgtcggtc
     1441 ccgacccctt gagctgaatg tcgcggcgta cgccgtcctg atccacgact tcgccgagga
     1501 ggatcgcccg cccgtcaccc agttgcggga cgaaatggcc gaactggtgt ccggcgtagg
     1561 ccatggcgat cggctcggcc ccgctcggaa cgcgcctgcc ggcgagaacc tctacaccct
     1621 ccgagctgga gagccagtcg ggatcgaggc tcaactggac ggcaagttgg cggttgagcc
     1681 tgacgagctt aggcgcggcc acggaggtcg gcggcaggcg agcgaagaac cggtccggca
     1741 gatgggcgta ggtgttgtcg aagggaaaat gcatcctcat gaccacgtct gccgccgaga
     1801 ggaatcctgc ttcagtcccg cgaatggcct gccgctcgcc tgagccgaca cgcacctgca
     1861 acttcggctt ggatcgaccg cttctccctt ggccaagtgt cgcagcctca tgtgcaattc
     1921 taacctgacc tgcttcgggt atggccttcc cgggccggca ccagccgatc cgctgctgca
     1981 cccgttgcgc aagcgtcgat ggacttgcgg aacaggtcga cgacctgctc gtctctgggc
     2041 taggtccatg gggcacccac gcctgttgtg ttttccaggg tttggtcgtt gagcagtctt
     2101 tggttcagaa acagaaacga gccaaccgga ccgcggaaac cccgcccggc catgaatgcg
     2161 cgcaccgcac cgagcgcaat gccctggccc cagtgcattg cccagttcat ccacagacgg
     2221 tcgttgttag gcctggtagg aaggccaaga agt
//
LOCUS       DASQWN010000648         2604 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_280249, whole genome shotgun sequence.
ACCESSION   DASQWN010000648 DASQWN010000000
VERSION     DASQWN010000648.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2604)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2604)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2604
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_280249"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..752)
                     /locus_tag="VE686_12145"
     CDS             complement(<1..752)
                     /locus_tag="VE686_12145"
                     /inference="COORDINATES: protein motif:HMM:NF017373.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY85235.1"
                     /translation="MNGLAAVNIANSLETALTDLLSFLPKLIGFLVILLVGYIVARIV
                     KSLIARLLGRLHVDRRLHESPAGSYVERFSPGASPSRLVGAVAFWIIFIVALTAAIGA
                     LQIPAVTAFMNQVLTYLPNVIVAILIFVIAAAIGGAVAGLVERTMGDTPTGDLVKTAA
                     PALVLAVAFFMILTQLNIAPEIVQILFTALVGALALGLALAFGLGGRNVAERILEEAY
                     QRGQEQRGQAREDLEVGKERGRRDAQQARAQV"
     gene            complement(901..1992)
                     /locus_tag="VE686_12150"
     CDS             complement(901..1992)
                     /locus_tag="VE686_12150"
                     /inference="COORDINATES: protein motif:HMM:NF010613.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF475 domain-containing protein"
                     /protein_id="HYY85236.1"
                     /translation="MRETLGFFKWSFLATLVALVVAFLYAGLTGVVIAGILILLEASI
                     SFDNATVNATVLRNMGDRWQKIFLTVGILIAVFGMRVAFPILIVAFAVGQGIGEVVSQ
                     ALYAQDQYAHNVEAAIPIIASFGGMFLVLVFLEYFLDPERETLWIKPFERFFRWAGHL
                     PAAPVTFALVALLIASQLVAPQLTQVVLLSGLLGVVTHLIVSGLTGLLARVTGSGSGP
                     RTGIAGFASFLYLETLDASFSFDGVIGAFAITKDIVIIALGLGVGALYIRSLTVFLVR
                     RGSLLRYDYLAAGAHWAIGVLAVVLLVETQLHVPEWLTAVLGVGFIGAAFAASVVKNR
                     RQERAEGEGTEEASEGAAEGKGSSNGDRS"
     gene            2200..2349
                     /locus_tag="VE686_12155"
     CDS             2200..2349
                     /locus_tag="VE686_12155"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY85237.1"
                     /translation="MNQSDRESFAVEEPSVTPLEGSGETQAVGFMLVARRHVRLALPL
                     PSNSP"
BASE COUNT          447 a          873 c          910 g          374 t
ORIGIN      
        1 tcgacctgcg cgcgcgcctg ctgggcgtcg cggcgaccgc gctccttgcc gacctcgagg
       61 tcctcgcgcg cttggccgcg ctgctcctgg ccgcgctggt aggcctcctc gaggatgcgc
      121 tcggcgacgt tgcgaccacc aagcccgaag gcgagggcaa ggccaagcgc gagcgccccg
      181 acgagtgcgg tgaagaggat ctgcacgatc tcgggggcga tgttgagctg ggtgaggatc
      241 atgaagaagg cgaccgctag tacgagcgct ggggcggccg tcttgacgag gtccccggtc
      301 ggggtgtcgc ccatcgtgcg ctcgacgagg cccgcgaccg cgccgccgat cgccgcggcg
      361 atcacgaaga tcaggatcgc cacgatcacg ttcggcaggt aggtgagcac ctggttcatg
      421 aacgccgtca ccgcggggat ctgaagcgcc ccgatcgccg cggtgagcgc gacgatgaag
      481 atgatccaaa aggccaccgc gcccacgagc cgcgagggcg aggcccccgg actgaagcgc
      541 tcgacgtagc tgcccgccgg gctctcgtgc aaccgccggt cgacgtgcag gcggcccaag
      601 aggcgcgcga tgagcgactt gacgatgcgg gccacgatgt agcccacgag caggatgacg
      661 agaaagccga tcagcttcgg caagaagctg agcaggtccg tcagcgccgt ctcaaggctg
      721 ttggcgatgt tcaccgccgc taggccgttc atgtctcccc tccctttctt gtctagatct
      781 agaggttgtg gtgccgtcct ccccccgctg agaggcgcca aaccacgcat accgtcttgt
      841 gggcgtgcgc gcccgcgcta ggagttggct cgcatcctgc gggtgcctcg gcggcagcag
      901 tcacgagcgg tccccgttgc tcgagccctt gccctctgcg gccccttcgc tggcctcctc
      961 ggtcccctcg ccttctgcgc gctcctgccg ccggttcttc acgacgctcg cggcgaaggc
     1021 ggcgccgatg aacccgactc cgagcacggc ggtcagccac tcggggacgt ggagctgcgt
     1081 ctccacgagc aggacgaccg caagcacgcc gatcgcccag tgcgcgccgg cggcaaggta
     1141 gtcgtagcgc agcaggctgc cccgccggac gaggaacacc gtcagcgagc ggatgtacag
     1201 cgcgccgacg cccaggccga gcgcgatgat gacgatgtcc ttggtgatcg caaaggcgcc
     1261 gatgacgccg tcgaaggaaa acgaggcgtc gagcgtctcc aggtagagga aggatgcgaa
     1321 gccggcgatg cccgttcgcg gcccgcttcc cgacccggtg acccgagcga gcaggccggt
     1381 cagcccggag acgatcaggt gggtgactac gccgagcagt ccagagagga gcacgacctg
     1441 ggtcagctgc ggggccacga gctgcgaggc gatcaacagc gcgacgaggg cgaaggtcac
     1501 cggcgccgcg gggagatgtc ccgcccagcg gaagaagcgc tcgaatggct tgatccacag
     1561 ggtctcccgc tctggatcga ggaaatactc gaggaagacg aggaccagga acatgccgcc
     1621 gaaggaggcg atgatcggga tcgccgcctc gacgttgtgc gcgtactgat cctgcgcgta
     1681 cagcgcctgg gacacgacct cgccgatccc ttggccaacg gcgaacgcga cgatgaggat
     1741 cggaaaggcg acccgcatgc cgaagaccgc gatcaggatg ccgacggtca ggaagatctt
     1801 ctgccaccgg tcccccatgt tgcgcagcac ggtcgcgttg acggttgcgt tgtcgaacga
     1861 gatcgaggcc tcgagcagga tgaggatccc ggcgatgacg acgccggtca ggccggcgta
     1921 gaggaacgcg acgacgaggg ctacgagcgt ggcgagaaac gaccacttga agaagccgag
     1981 cgtctcccgc accgtcgcct acatccccag ggggagcggt tctcgaacta ggccaccatt
     2041 atcgagagga cggagaccat gcccccggga cgcgcggttt agcattcgcg cgcgtgtccc
     2101 accagcgccg cgaacccgtc ttcctcgaga cgaccggtat cggatcgagg gcaagctcac
     2161 tcttcgagcg agggttttcg cagccggctg tccgactacg tgaaccagag cgaccgcgaa
     2221 tccttcgccg tcgaggagcc gtcggtcacg ccgctcgagg gctcgggcga gacccaggcg
     2281 gtcggcttca tgctcgttgc ccgcaggcac gtgcggctcg cgctgccgct gccgagcaac
     2341 agcccctagg cgctcgagac ggtcgtcctg tccgcgcgcg cgtcggttcc ggagcgagtc
     2401 ggcgcgcccg cgcgcgccgc ggcgacgaac gcgtcgatca cgcctctgcg ctcgtcgacc
     2461 tctgggtgcc acaggacccc gagtgcgaac cgccggccgg ggcgctcgat cgcctcgacg
     2521 aggtcgtccg cgagcgggtg ctgcgcgatc cggtcgtccg gatcaagctg tgggcgccgg
     2581 acgggcggat cgtctactcg gacg
//
LOCUS       DASQWN010000649         5652 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_164580, whole genome shotgun sequence.
ACCESSION   DASQWN010000649 DASQWN010000000
VERSION     DASQWN010000649.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 5652)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5652)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5652
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_164580"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..408)
                     /locus_tag="VE686_12160"
     CDS             complement(<1..408)
                     /locus_tag="VE686_12160"
                     /inference="COORDINATES: protein motif:HMM:NF014015.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY85238.1"
                     /translation="MPTPTAVSWSGGKDCCLALHRAREAGFEVRYLLAMFDESGERTR
                     SHAIPREVMQAQAEALGMELVAPSASWGDYESVFVGALKALQERGVADVVFGDIDLAP
                     HREWEEKVCAAASVTPHLPLWQEDRQALAAEVLD"
     gene            complement(1224..2666)
                     /locus_tag="VE686_12165"
     CDS             complement(1224..2666)
                     /locus_tag="VE686_12165"
                     /EC_number="1.2.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018045522.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent succinate-semialdehyde
                     dehydrogenase"
                     /protein_id="HYY85239.1"
                     /translation="MANGYPELRLHVAGAWRAASTGETLPVLNPATGEEIGSVPVASR
                     DDLDAALEAAERGFKAWRAVSAFERGKIMRKAADLLRERVDTIARIMTMEQGKPVAEA
                     KGETLAAADTIDWFAEEGRRAYGRVVPARAEGVYQLVIKEPVGPVAAFTPWNFPINQA
                     VRKVSAALCTGCSVILKGPEETPASCAELIKAFLDAGVPADVLSLVFGRPADISSYLI
                     AHPIIRKMSFTGSTAVGKQLAALAGQHMKRVTMELGGHAPAIVFKDADVGKAIKILSA
                     NKYRNAGQVCVAPTRFLVHDTVFEEFVDGFVAASKSLKVGDGLDQATRMGPLAHSRRV
                     EAMEGFVADAKSAGAELRTGGSRIGNQGYFFEPTVFTDVPLEARIMNEEPFGPVSAIQ
                     RFSDDEEAFTEANRLPYGLAAYAYTSSAATATKLASVVESGMISINHHGLALPEVPFG
                     GMKDSGYGSEGGLEAIEGYLNTKFVSQAGF"
     gene            2841..3728
                     /locus_tag="VE686_12170"
     CDS             2841..3728
                     /locus_tag="VE686_12170"
                     /inference="COORDINATES: protein motif:HMM:NF015411.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1932 domain-containing protein"
                     /protein_id="HYY85240.1"
                     /translation="MPAIGFLGFGEVASRFAAALSQHGAEICAFDVLVAAPGGPEKLS
                     ARAAGTPIAFVPLADMTARADLVLSTVTTDVALDAAKACAAHLDRRHTFVDLNATSPA
                     LKREIGAAVAASGAAFVEGAILGAVGVTGAGTRILLCGERGQAVAESLTGLGLNVGFY
                     GTEIGRASTFKLLRSVFSKGLEALLLEARMAARRAGVGDDVWREILETIDERPFAEVG
                     GNWMRTHGTAHMRRYHEMVQVEALLRDLGLDPLITQATTAFFERSTRLELSRAFPASP
                     KDADEVVASLDHLLTSKHP"
     gene            3746..4510
                     /locus_tag="VE686_12175"
     CDS             3746..4510
                     /locus_tag="VE686_12175"
                     /inference="COORDINATES: protein motif:HMM:NF015297.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aldolase/citrate lyase family protein"
                     /protein_id="HYY85241.1"
                     /translation="MRQNTMKAKLRAGEPALGLSVMIPSPQVVEMAAGLGFDWVLIDC
                     EHGTIGLETVELMVMAAEASGVTPIVRPRSKDPQDILQVMDRGAVGLQVPHVTSAADA
                     RAAVEAIKFHPIGRRSLAAGTRASGYGYRGSAGSFVEEANRESLVCVQIEDEEAVHNI
                     DEILTVDHVDVFFIGPSDLSQSMGYPGNPKAEPVARAIESTLKKIVAAGKTPGMPATA
                     DTIGTALERGVRYTYNHLPTVLAAGVGAYMASAARK"
     gene            complement(4591..5625)
                     /locus_tag="VE686_12180"
     CDS             complement(4591..5625)
                     /locus_tag="VE686_12180"
                     /inference="COORDINATES: protein motif:HMM:NF024772.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HYY85242.1"
                     /translation="MPVTPRTRSFARLIGAAGLLLASAAVTFTATEARAEASELRVAK
                     QPGLSYLPAVVAEKLGLVEKHARGAGLGDLKVNWTRLTSGGASNDALLSGNVDMVISG
                     GPNMLILWAKTNGEVKGIVTTGALPMLLVTNNPKVKSVKDFTAEDRIAVPTIRVGTQP
                     VALGLAVEKELGAAALEKYNTMQVAMGHPDALIALQNKTGGVTAHFSQPPFQNLALKV
                     PGIHAVLNSYDVVGGGLTNGMVYGTTKFRDANPKIVRAFVEGIKEAVEFIAKDKRAAA
                     EIYLDMNKEKLTVDELVAILNEPNMLFTAAPQNLLKAAQYFNRAGIIKQNPKDWKEFF
                     FPEVHDLPGS"
BASE COUNT          831 a         1938 c         1976 g          907 t
ORIGIN      
        1 atcgagaacc tccgcggcca gcgcctgccg gtcctcctgc caaagaggca gatgcggcgt
       61 gacgctcgcc gccgcgcaaa ccttttcctc ccactcgcga tggggggcga ggtcgatatc
      121 gccgaacacc acgtcggcga cgccgcgctc ctgcagggcc ttgagcgcgc cgacgaagac
      181 gctctcgtag tcgccccagc tcgcgctcgg cgcgacgagc tccatgccga gcgcctcggc
      241 ttgcgcctgc atcacctccc gcgggatcgc gtgcgaccgc gtccgctccc cgctctcgtc
      301 gaacatggcg agcagatacc gcacctcgaa ccccgcctcc cgcgcgcgat gcaaggccag
      361 gcaacaatcc ttgccgccgc tccaggagac tgcggtgggg gtgggcatga gggcgctcgg
      421 gtgggaaggt tctgcggtgg cgtggactat acaccgcgat cgctctcgcg gcgacgcgac
      481 ccgctccgcc gagctcgacc cttagtgcga gcttgctccc aaacatcctc atgctgagga
      541 ggcctgcgca gcaggcggtc tcgaagcacg caccagggac tcgcgcttga caacgttcct
      601 tatttgtgct catttgctcc tatcccgccc ggcaaggggt gcttccggag gtgtctggtt
      661 gcagggcggc atcgctgagt gaggtttcgg ctggcgacag ctggatcgag cgaggcggtg
      721 gtccgaggag cgaggccgca aggctcgagg tccgaagggc tgatgcggtg tccgggtcgc
      781 gggggtcacg tcccgtggtc cagggtcctt accgtcgacc gggatcggcg cggctgccag
      841 gcgcgtcccc gggaagcggg gtcccgtccg tcctctccgg ggcggacctc gggccggttc
      901 tgcgccttgc gggttcgtcc ccgggatgcg gttccgatcc gaggcccact gccgagagag
      961 gtccgcgcgc aagcgcttga ggtgctcggg aggcagccct ccctcgtagc gccgaagcgc
     1021 gggaccaggg atcaaaggca tcgcggtgcg aggcgcggcc gacctcacgc ggggacggcc
     1081 tgcctgcctg ttttccgccc ggcctcgcgg ccggggccga ccgcgcctcg cgcccccctc
     1141 tttcttcaag aggaagcgca gaagcgaagg gccacccccc cgggccgaga ggccgcgggg
     1201 atatggctgc ttgcggcgag tgcctagaag cccgcctgcg aaacgaactt ggtgttgagg
     1261 tagccctcga tggcctcgag accgccctcg ctgccgtagc cggaatcctt catgccgccg
     1321 aagggcacct caggaagggc gaggccgtgg tggttgatgg agatcatgcc gctctcgacc
     1381 accgaggcga gcttcgtggc cgtcgcggcc gagctcgtgt aggcataggc cgcaagcccg
     1441 tacggcaggc gattggcctc cgtgaaggcc tcctcgtcgt cggagaagcg ctggattgcc
     1501 gataccgggc cgaacggctc ctcgttcatg atccgcgcct cgagcggcac gtcggtgaac
     1561 accgtcggct cgaagaaata gccctggttg ccgatgcggc tgccgcccgt gcgcagctcg
     1621 gccccggcgc tcttcgcatc ggccacgaag ccctccatcg cctcgacgcg gcgcgaatgc
     1681 gccagcggcc ccatgcgggt cgcctggtcg aggccgtcgc cgaccttcag gctcttcgag
     1741 gcggccacga agccgtccac gaactcctcg aagaccgtgt cgtgcacgag gaagcgcgtc
     1801 ggcgccacgc agacctggcc ggcgttgcgg tacttgttgg ccgacaggat cttgatggcc
     1861 ttgccgacgt ccgcgtcctt gaacacgatg gcgggggcgt ggccgccgag ctccatggtg
     1921 acgcgcttca tgtgctggcc cgcgagggcg gcgagctgct tgccgacggc cgtcgagccc
     1981 gtgaacgaca tcttgcggat gatcgggtgc gcgatgaggt agctcgagat gtccgccggg
     2041 cggccgaaca cgaggctcag cacgtccgcg gggacgccgg cgtcaaggaa ggccttgatg
     2101 agctcggcgc agctcgccgg cgtctcctcc ggccccttca ggatcaccga gcagccggtg
     2161 cacagcgccg ccgagacctt gcggaccgcc tggttgatgg ggaagttcca cggcgtgaag
     2221 gcggcgacgg gcccgaccgg ctcctttatg accagctggt acacgccctc ggcgcgggcc
     2281 ggcacaacgc gaccgtaggc ccggcggcct tcctcggcaa accagtcgat ggtgtcggcg
     2341 gcggccagcg tctcgccctt ggcttcggcg actggcttgc cctgctccat cgtcatgatg
     2401 cgggcgatgg tgtcgacgcg ctcgcgcagg aggtcggcgg ccttgcgcat gatcttgccg
     2461 cgctcgaagg ccgagacggc gcgccacgcc ttgaagccgc gctcggccgc ctcgagggcg
     2521 gcgtcgagat cgtcgcggct cgccaccggc acggatccga tctcctcgcc tgtcgcggga
     2581 ttgagcaccg gcagggtctc gcccgtcgag gcggcgcgcc aggcgccggc gacgtgcagg
     2641 cgaagctcgg gatatccatt ggccatggcg gtcgtcctca caaggcaggg gagaggttgc
     2701 ccgcggactt gcaccaaatc cgtcatgacg gcaaccggct gcggggcgtg cctgcagagc
     2761 gacggcaggc ttgtggcaac gtgcgccggc tatcaagatt gcacggggca gtcatgaagg
     2821 ctgcgagggg gaggactgca gtgccggcga tcgggttcct cggcttcggc gaggtcgcgt
     2881 cgcgcttcgc cgccgcgctg tcgcagcatg gcgccgagat ctgcgccttc gacgtgctcg
     2941 tcgctgcgcc gggggggccc gagaagctca gcgcgcgggc cgccggcacg cccattgcct
     3001 ttgtgccgct cgccgacatg acggcacgcg ccgacctcgt cctctcgacg gtgaccaccg
     3061 acgtagcgct cgatgctgcc aaggcctgcg cggcgcacct cgatcggcgc cacaccttcg
     3121 tcgacctcaa cgccacctcc cctgccctga agcgcgaaat aggcgccgcg gtcgcggcgt
     3181 ccggagcggc cttcgtcgaa ggggcgatcc tcggcgcggt cggcgttacg ggcgccggca
     3241 cccgcatcct cctctgcggc gagcgcggcc aagccgtcgc cgagagcctc acggggctcg
     3301 gcctcaacgt cggcttctac ggcaccgaga tcggccgcgc ctcgaccttc aagctgctgc
     3361 gcagcgtctt ctccaagggg ctcgaggccc tcctgctcga agcgcgaatg gccgcgcggc
     3421 gcgccggggt cggggacgac gtctggcgcg agatcctcga gacaatcgac gagcgcccgt
     3481 tcgccgaggt cggcggcaac tggatgcgca cgcacggcac ggcccacatg cgacgctacc
     3541 acgagatggt ccaggtcgag gcgctcctgc gcgacctcgg gctcgacccg ctcatcacgc
     3601 aggcgacgac ggccttcttc gagcgctcga cccggcttga gctgtcgcgg gccttccctg
     3661 cttcgccgaa agacgccgac gaggtcgtcg cgagcctcga ccacctcctc acaagcaagc
     3721 acccctagga tcaaggaagc tctcgatgcg ccaaaacacc atgaaggcga agctgcgcgc
     3781 cggcgagccc gcgctcgggc tgtcggtgat gatcccctcg ccccaggtcg tcgagatggc
     3841 tgcgggcttg gggttcgact gggtcctgat agattgcgag cacggcacga tcgggctcga
     3901 gaccgtcgag ctcatggtca tggcggccga ggcgagcggc gtgacgccga tcgtgcgccc
     3961 gcgctcgaag gacccgcagg acatcctcca ggtcatggac cgcggcgcgg tgggcttgca
     4021 ggtcccccat gtgacgagcg ccgccgacgc ccgcgccgcc gtggaggcga tcaagttcca
     4081 tccgatcggc cgccgcagcc tcgcggcggg cacccgggcg tcgggctacg gctaccgcgg
     4141 ctcggccggc tccttcgtcg aggaagccaa ccgcgagtcc ctcgtctgcg tgcagatcga
     4201 ggatgaggag gccgtccaca acatcgacga gatcctcacc gtggaccatg tcgacgtgtt
     4261 cttcatcggc ccctcggacc tgtcgcagtc catgggctac ccgggcaacc cgaaggcgga
     4321 gcccgtggcg cgggcgatcg agtcgacgct gaagaagatc gtagcggcgg ggaagacacc
     4381 cggcatgccg gcgaccgccg acaccatcgg cacggccctg gagcgcgggg tgcgctacac
     4441 ctacaaccac ctgccgacgg tgctcgcggc gggcgtcggc gcttacatgg cgtcggccgc
     4501 gaggaaatag cgcttcggcg tcgggagacg ggaaccccgc ccccccctga cgagacgcga
     4561 tccctccgct cgtgaggagg gatgctgcgc tcagctgccg gggaggtcgt gcacctcggg
     4621 gaagaagaac tccttccagt ccttcgggtt ctgcttgatg atgccggcgc ggttgaagta
     4681 ctgcgccgcc ttgagcaggt tctgcggcgc cgcggtgaac agcatgttgg gctcgttgag
     4741 gatggcgacg agctcgtcga ccgtgagctt ctccttgttc atgtcgagat agatctcggc
     4801 ggcggcgcgc ttgtccttgg cgatgaactc gacggcctcc ttgatgccct cgacgaacgc
     4861 cctcacgatc ttggggttgg cgtcgcggaa cttcgtcgtg ccgtagacca tgccgttcgt
     4921 gagcccgcca ccgaccacgt cgtacgagtt gagcacggcg tggatgcccg ggactttgag
     4981 ggcgagattc tggaacggcg gctgcgagaa atgcgccgtc acgccgccgg tcttgttctg
     5041 cagggcgatg agggcgtccg ggtgacccat ggcgacctgc atggtgttgt acttttcgag
     5101 cgccgcggcg ccgagctcct tctcgacggc aaggcccagc gccacgggct gcgttccgac
     5161 gcggatcgtc ggcacggcga tgcggtcttc cgccgtgaag tccttgaccg acttcacctt
     5221 cggattgttg gtgacgagga gcatcggcag ggccccggtg gtgacgatgc ccttcacctc
     5281 cccgttcgtc ttcgcccaca ggatcagcat gttcgggccg ccgctgatca ccatgtcgac
     5341 gttgccggac aggagcgcgt cgttgctggc gccgccactc gtcaggcgcg tccagttgac
     5401 cttgaggtcg ccaaggccgg ccccccgggc gtgcttctcg acgaggccga gcttttcggc
     5461 gacaacggcc ggcagatagg acagcccggg ctgcttggcg acgcgcagct cggaagcttc
     5521 ggcgcgggcc tctgtggccg tgaaggttac ggcggccgag gcgagcagca ggccggcggc
     5581 accgatcagg cgcgcgaagc ttcgggtccg cggcgtgacg ggcattggtg ttcctcccat
     5641 tgagacatcg tt
//
LOCUS       DASQWN010000650         3400 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_280297, whole genome shotgun sequence.
ACCESSION   DASQWN010000650 DASQWN010000000
VERSION     DASQWN010000650.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 3400)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3400)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3400
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_280297"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..272
                     /locus_tag="VE686_12185"
     CDS             <1..272
                     /locus_tag="VE686_12185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010660420.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0031992 - energy transducer activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="energy transducer TonB"
                     /protein_id="HYY85243.1"
                     /translation="KGDVALRLSRRKRYPAEAQARRAEGVATVRFSLDAAGRVVSAAL
                     ARSSGVPVLDAESLALIRRAEPFPAPPSGMPVPIEITVPVRFSFR"
     gene            complement(432..1217)
                     /locus_tag="VE686_12190"
     CDS             complement(432..1217)
                     /locus_tag="VE686_12190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020180004.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="(Fe-S)-binding protein"
                     /protein_id="HYY85244.1"
                     /translation="MAGGARGKVRVGLFATCLVDLMRPSVGFAAAKLLEDAGCTVEVP
                     VQTCCGQPAFNSGDRRTAQDLAIRVIDAFSGYDYVVAPSGSCAGQIRKHFPELFSDDP
                     NWARRAEALAAKTYELVSFLVDVLGVSRVDAHYDGAVTYHDSCSGLRELGVHAQPRKL
                     LATVEGLRLVELPDADVCCGFGGTFAVKYPDISGKIVDEKAKNIVATGAPTLLAGDLG
                     CLMNMAGKLSRDGRAVEVRHVAEVLAGMTDDPPIGMPAEKRER"
     gene            complement(1293..1682)
                     /locus_tag="VE686_12195"
     CDS             complement(1293..1682)
                     /locus_tag="VE686_12195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009763827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c family protein"
                     /protein_id="HYY85245.1"
                     /translation="MRLWIMSALIALGAVGSAHAQDAASGEKVFLQCKACHQVGPTAK
                     NAVGPVLNGLFGRTSGHVEGYAYSPANKAAGIKWDDATFAEYIKDPKAKIPGTKMVFA
                     GIKDEAKVKDLIAYLHTFDSAPVKLTQ"
     gene            1877..3310
                     /locus_tag="VE686_12200"
     CDS             1877..3310
                     /locus_tag="VE686_12200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012252632.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-linked oxidase C-terminal domain-containing
                     protein"
                     /protein_id="HYY85246.1"
                     /translation="MTIPFPIPDAAVIARRDEIVRGLSGLVAPEALIVAEDERRAFET
                     DGLTAYRRMPLAVVLPSTTAEVSTIMRYCHENRLKVVARGAGTSLAGGAIAQEDAIIL
                     GVSKMNCVLDMDFANRAARVQAGITNLAISQAVAHEGFFYAPDPSSQLACTIAGNIAM
                     NSGGAHCLKYGVTTNNLLGVTMVMVDGTVVEIGGAHLDAAGYDLLGLVCGSEGQLGIV
                     TEATVRILRAAEGARPALMGFDTVEDAGACVAAIIGHGIIPVAIEYMDRPAIKICEAF
                     AHAGYPLDVEAMLIIEVEGSDTECEDMLSRIVEIAKPFRPKTLKVSQSEAESAAIWKG
                     RKSAFGATGRISDYICMDGTIPTGQLPYVLKRIDEICKAEGLGVANVFHAGDGNLHPL
                     ILFDINKPGEMDKAERAGENILKLCVEVGGCLTGEHGVGIEKRDLMRCQFTQADLEQQ
                     MRVRGVFDPGWLLNPAKVFPLDGRVAA"
BASE COUNT          515 a         1205 c         1174 g          506 t
ORIGIN      
        1 ggaagggcga cgtggcgctg cgcctgtcgc gccgcaagcg ctatcccgcg gaggcgcagg
       61 cgcgccgggc agagggcgtc gccacggtcc gcttcagcct cgatgccgcc gggcgcgtcg
      121 tctcggccgc gctcgcgcga agctccggcg tcccggtcct cgacgccgag agcctcgccc
      181 tcatccggcg cgccgagccg ttccccgctc ctccctccgg catgccggtc ccgatcgaga
      241 tcaccgtccc ggtccgcttc tcgttccggt aggacgccat actctcaacc cgcgtcatcc
      301 agtccggcgc ttcagcgccc gcccggtggg cggaaccacg gtgcttgctg caggggcgcc
      361 gggcttccgc cccaccccgg tcgcgcctgc aggcgcgact cgccctcccc tcgcggggag
      421 ggatcgcgca gctaccgctc ccgcttctcg gcgggcatcc cgatgggcgg gtcgtcggtc
      481 atgccggcaa gcacctcggc gacgtggcgg acctcgacgg cgcggccgtc tcgcgacagc
      541 ttgccggcca tgttcatgag gcagccgagg tcgccggcga gcagggtcgg ggcgccggtg
      601 gcgacgatgt tcttcgcctt ctcgtcgacg atcttgcctg agatgtcggg gtacttgacc
      661 gcgaaggtgc cgccgaagcc gcagcacacg tcggcgtccg gaagctcgac gaggcgcagg
      721 ccttcgacgg tggcgaggag cttgcgtggc tgcgcgtgca cgccgagctc gcgcaggccc
      781 gagcacgagt cgtggtaggt cacggcgccg tcgtaatgcg cgtcgacgcg cgagacgccg
      841 aggacgtcga cgaggaagct cacgagctcg taggtcttgg cggccagcgc ttcggcgcgc
      901 cgggcccagt tcgggtcgtc ggaaaagagc tcggggaagt gcttcctgat ctgccccgcg
      961 cacgagccgg acggcgcgac cacgtagtcg tagcccgaaa aggcgtcgat gacgcggatg
     1021 gcgagatcct gcgcggtgcg gcggtcgccg gagttgaagg ccggctggcc gcagcaggtc
     1081 tgcaccggca cctcgacggt gcagccggcg tcctcgagga gcttcgcggc cgcgaagccc
     1141 acggacgggc gcatgaggtc gacgaggcag gtcgcgaaca gcccgacccg caccttgcct
     1201 ctcgccccgc ccgccatccg cctcaagcct ccatcgcccg tccgcggcgc atctgccccg
     1261 ggcggggagc cctcgtcaat gcggtgccgg ccttactggg tgagcttgac gggggccgag
     1321 tcgaaggtgt gcaggtaagc gatgaggtcc ttcaccttgg cctcgtcctt gatgccggcg
     1381 aagaccatct tggtgcccgg gatcttggcc ttggggtcct tgatgtactc ggcgaaggtg
     1441 gcgtcgtccc acttgatgcc tgcggccttg ttggccggcg agtaggcgta gccctcgacg
     1501 tggccggagg tgcggccgaa gaggccgttg aggaccgggc cgacggcgtt cttggcggtc
     1561 gggccgacct ggtggcaggc cttgcactgc aggaagacct tctctcccga cgccgcgtcc
     1621 tgggcgtgcg ccgagccgac ggcgccgagg gcgatgaggg cggacatgat ccacaaacgc
     1681 atcgggcaaa cctccagaac ggttgagcgg tgccgctgca cggcctttga gccccgaaac
     1741 gctcgggagc ggcgcatcat cgcccggaac gcgcaatacg caagcagcgt cgacccgccg
     1801 aggcgcgcga gccggtgcaa agcccgccgc aagcggctag attggccggg cgcgaggccg
     1861 cttccagggc tgttccatga ccatcccgtt ccccatcccc gacgccgccg tgatcgcccg
     1921 ccgcgacgag atcgtgcgcg gactctccgg actcgtggcg cccgaggccc tcatcgtcgc
     1981 cgaggacgag cgccgcgcct tcgagaccga cgggctcacg gcctaccgcc ggatgccgct
     2041 cgccgtggtg ctgccctcga ccaccgccga ggtgtcgacg atcatgcgct actgccacga
     2101 gaaccgcctc aaggtcgtcg cccgaggcgc cggcacctcg cttgccggcg gcgccatcgc
     2161 gcaggaggac gccatcatcc tcggcgtgtc gaagatgaac tgcgtcctcg acatggactt
     2221 cgccaaccgc gccgcgcgcg tgcaggccgg catcaccaac ctcgccatca gccaggcggt
     2281 ggcgcacgag ggcttcttct acgcccccga cccgtcgagc cagctcgcct gcacgattgc
     2341 gggcaacatc gccatgaact ccggcggcgc gcactgcctc aagtacggcg tcaccaccaa
     2401 caacctgctc ggcgtcacca tggtgatggt cgacggcacg gtggtggaga ttggcggcgc
     2461 ccacctcgac gccgcgggct acgatcttct cggcctcgtg tgcggctcgg agggccagct
     2521 tggcatcgtc accgaggcga cggtccgcat cctgcgcgcc gccgagggcg cgcggcccgc
     2581 gctcatgggc ttcgacaccg tcgaggacgc cggggcctgc gtcgcggcca tcatcgggca
     2641 cgggatcatc ccggtcgcca tcgagtacat ggaccgcccg gcgatcaaga tctgcgaggc
     2701 cttcgcgcac gccggctacc ccctcgacgt cgaggccatg ctgatcatcg aggtcgaggg
     2761 ctccgacacc gagtgcgagg acatgctgtc ccgcatcgtc gagatcgcga agcccttccg
     2821 gcccaagacc ttgaaggtgt cgcagtccga ggccgagagc gccgccatct ggaagggccg
     2881 caagtcggcc ttcggcgcca ccggccgcat ctcggactac atctgcatgg acggcaccat
     2941 cccgacgggc cagctgccct acgtgctcaa gcgcatcgac gagatctgca aggcggaggg
     3001 cttgggggtc gccaacgtct tccatgccgg tgacggcaac ctgcaccccc tgatcctgtt
     3061 cgacatcaac aagcccggcg agatggacaa ggccgagcgt gccggcgaga acatcctcaa
     3121 gctctgcgtc gaggtcggcg gctgcctcac gggcgagcac ggcgtcggca tcgagaagcg
     3181 cgacctcatg cgctgccaat tcacccaggc cgacctggag cagcagatgc gcgtccgcgg
     3241 cgtctttgac ccgggctggc tgctgaatcc cgcgaaggtg tttccgctcg acggacgggt
     3301 ggcggcctag acggagagat ataggttaga gcgatgacca aagagcagat cgagcagatt
     3361 ctcgagcgcg tccgcacgtg gccggccgaa cgtcaggagg
//
LOCUS       DASQWN010000651         2608 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_280689, whole genome shotgun sequence.
ACCESSION   DASQWN010000651 DASQWN010000000
VERSION     DASQWN010000651.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2608)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2608)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2608
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_280689"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1343
                     /locus_tag="VE686_12205"
     CDS             <1..1343
                     /locus_tag="VE686_12205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009492252.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HYY85247.1"
                     /translation="REVTWVNLFEGLVRLDRKGEVQPLLAKSWEVTPDGLTYTFRLQQ
                     GVKFHDGKAFSSADVKFAFDRARAPTSTNAQKQIFAPIDAIETPDPATVVMKLKQPSG
                     NFLYYLAWGDAVIVAPETAETNRTNPVGTGPFKFKAWAKGDRVELVRNPDYWQKDKVK
                     LESVTFRFIPDPQAQVAALRAGDIDAFPNIGAPELFADLKKDARFTAVAGNTEGEIVA
                     GMNNAKKPFDDPRVRRALMHAVDRKALIEGAYSGFGQPIGSHFSPNHPAYVDTTAVVP
                     YDTAKAKALLKEAGLASGLSFTIKAPQMAYASRSAELLAAMFAEVGVDAKIVPTEFPA
                     KWIEEVFRAKDFDMTIVAHAEPLDIEIYGRETYYFNYKSQAFRDLIADIARTTDDKAR
                     MAKYAEAEKMLAQDLPALFLFQLPKLGVWNAKLKGMWENTPIPSNDVTEVYWTE"
     gene            1708..>2608
                     /locus_tag="VE686_12210"
     CDS             1708..>2608
                     /locus_tag="VE686_12210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007813222.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HYY85248.1"
                     /translation="MLRLLGSRLVSLALTLLVVSAAIFLVLEVLPGDPAAIMLGTSAR
                     EDTLAALRTELGLDRPAWERYAVWIGGLATGDLGRSITYGTPVADLVADRLAVTVPLA
                     ALAIVLAVTVALPLGIAAAARRDRAVDRFVLVFSQLGVAVPNFWLGLLFILLFSTKLG
                     WLPAGGFPGWSAGPGPALRALVLPAVALALPQAAVLARVTRSAALEVIGADFVRTALA
                     KGLTEGRILRRHVVPNTLVPVATILGLQLSFLLAGAILVENVFTLPGLGRLAYQALAQ
                     RDLVVIRSVVLLLSGLVIVVNFAV"
BASE COUNT          360 a          947 c          872 g          429 t
ORIGIN      
        1 tccgcgaggt gacctgggtc aacctgttcg agggtctcgt gcggctcgac cgcaagggtg
       61 aggtgcagcc gctgctcgcg aagtcttggg aggtgacccc ggacgggctg acctacacct
      121 tccgcctgca gcagggcgtg aagttccacg acggaaaggc gttctcatcg gccgacgtga
      181 agttcgcctt cgaccgtgcc cgcgctccga cctcgaccaa tgcgcagaag cagatttttg
      241 cgcctatcga cgccatcgag acgcccgatc ccgcgacggt ggtgatgaag ctcaagcagc
      301 cgtccgggaa cttcctctac tacctcgcct ggggcgacgc cgtgatcgtc gcgcccgaga
      361 ctgccgagac caaccgcacc aacccggtcg gcaccgggcc gttcaagttc aaggcctggg
      421 ccaagggcga ccgggtcgag ctcgtgcgca atcccgacta ctggcagaag gacaaggtca
      481 agctcgagag cgtgaccttt cgcttcatcc ccgacccgca ggcgcaggtc gcggccctgc
      541 gcgccggcga catcgacgcg ttcccgaaca tcggcgcgcc cgagctcttc gccgacctca
      601 agaaggacgc ccgcttcacg gccgtggcgg gcaacacgga aggcgagatc gtcgccggca
      661 tgaacaacgc caagaagccg ttcgacgacc cgcgcgtgcg ccgggcgctc atgcatgcgg
      721 tcgaccgcaa ggcgctgatc gagggcgcct actcgggctt cggccagccc atcggcagcc
      781 atttctcgcc gaaccacccg gcctatgtcg ataccaccgc ggtcgtgccc tacgacacgg
      841 ccaaggccaa ggcgctgctc aaggaggcgg gcctcgcgag cgggctgtcg ttcaccatca
      901 aggcgccgca gatggcctac gccagccgct cggccgagct gctcgcggcg atgttcgccg
      961 aggtcggcgt cgacgcgaag atcgtcccga cggagttccc ggccaaatgg atcgaggagg
     1021 tcttccgggc caaggacttc gacatgacca tcgtcgccca cgccgagccc ctcgacatcg
     1081 agatctacgg ccgggagacc tattacttca actacaagag ccaggctttc agggacctca
     1141 tcgccgacat cgccaggacc acggacgaca aggcccgcat ggccaagtac gccgaggccg
     1201 agaagatgct ggcgcaggac ctgccggccc tgttcctgtt ccagctgccg aagctcggcg
     1261 tctggaatgc caagctgaag gggatgtggg agaacacccc gatcccgtcg aacgacgtca
     1321 ccgaggtgta ctggacggag tgatggggcg ctctccccat ctctccccga gaggggaggg
     1381 cgactcgcgc ctacgggcgc gagcggggtg gggcggaagc cctgagcctc tcgtttcgca
     1441 cggcggctcc gccccacccg ggcgggcgct gacgcgcccg tctccgccct cccctcgcgg
     1501 ggagggatca gcagcggcgc cgccccccgt cctttccggc atcgtcggcg tcgtcggcat
     1561 cttcccggat ttgtcggagg ctcccgtcgt gcggtttccg gcatcttccg cgttttcccc
     1621 ggattggtcg gcgcggggcc gggtgtcgga agatgccggt atggcatgcg agggcttcct
     1681 tccgggaccc ggggagcggg cggcgccgtg ctgcggctcc taggctcccg cctcgtctcc
     1741 ctggcgctca cgctgctcgt cgtctcggcg gcgatcttcc tggtgctcga ggtgctgccc
     1801 ggggacccgg cggcgatcat gctcgggacc tcggcgcggg aggacacgct cgcggcgctg
     1861 cggaccgaac tcgggctcga tcggccggcc tgggagcgct acgccgtctg gatcggcggc
     1921 cttgccacgg gcgacctcgg gcgctccatc acctacggca cgcccgtcgc cgatctcgtc
     1981 gccgaccggc tcgccgtgac ggtgccgctc gccgccctgg cgatcgttct cgcggtcacg
     2041 gtggccctgc cgctcggcat cgccgccgcc gcgcggcgcg accgcgccgt cgaccgcttc
     2101 gtcctggtgt tcagccagct cggcgtggcc gtgccgaatt tctggctcgg cctcctcttc
     2161 atcctgttgt tctcgaccaa gctcggctgg cttccggccg gcggctttcc gggctggtcg
     2221 gccggacccg gccctgcctt gcgcgccctc gtcctgccgg ccgtggccct ggcgctgccg
     2281 caagccgccg tgctcgcgcg cgtcacgcgc tcggcggcgc tcgaggtgat cggggccgac
     2341 ttcgtgcgca cggcgcttgc caaggggctg accgaggggc gcatcctgcg gcgccacgtc
     2401 gtccccaaca ccctcgtgcc ggtggccacc atcctcgggc tgcagctctc gttcctgctg
     2461 gccggggcca tcctcgtcga gaacgtgttc acgctgcccg gcctcgggcg cctcgcctac
     2521 caggcgctgg cccaacggga cctcgtggtc atccgcagcg tcgtgctgct tctgtcgggg
     2581 ctcgtcatcg tggtgaactt cgccgtcg
//
LOCUS       DASQWN010000652         3580 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_879653, whole genome shotgun sequence.
ACCESSION   DASQWN010000652 DASQWN010000000
VERSION     DASQWN010000652.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 3580)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3580)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3580
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_879653"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..708)
                     /locus_tag="VE686_12215"
     CDS             complement(<1..708)
                     /locus_tag="VE686_12215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009491335.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ion channel"
                     /protein_id="HYY85249.1"
                     /translation="MTHGAIDRLRDLYEGASPRAHTFRDVLFIFDITAILYVIVSSFL
                     PANDVTEWVNRVFGVLVLADLIARIAISARPARELIRPLTIAEIVAAISFLWPVGGGT
                     FLRALRTLRLLRTYAFLQRLRGASSWFRRNEDAVVAGTNLFVFIFVMTGVVYDTQHWS
                     NPHIANYADALYFTVTTLTTTGFGDITLPGTFGRMVSVFIMICGVTLFLRLAQVLFRP
                     NRVRFECPSCGLMRHDHD"
     gene            complement(807..1697)
                     /gene="yihU"
                     /locus_tag="VE686_12220"
     CDS             complement(807..1697)
                     /gene="yihU"
                     /locus_tag="VE686_12220"
                     /EC_number="1.1.1.373"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014285006.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfolactaldehyde 3-reductase"
                     /protein_id="HYY85250.1"
                     /translation="MDRTVAFIGLGTMGRPMALNILRRGFSVRAFDILPEAVEALAAA
                     GATPAGSPADAARGADIVITMLPNSSHVEEAVFGPAGVAEGIGQGALYIDMSTIAPAT
                     TDAIARRLAGRGVAMVDAPVGRQQQHAVEGKLLIMVGGAEGDVARARPILDCMGDTII
                     HCGPVGSGARMKLVNNFMSITLNATTAEALALAEASGLEVELARKVMLGTVAGTGHMG
                     TTYPAKVLKGDLSPGFMIDLALKDLRLALDLGQAVGLGLDTGRTAEQAYVEATEAGHG
                     RHDWTALYAHVRDEMRSRRK"
     gene            complement(1702..2694)
                     /locus_tag="VE686_12225"
     CDS             complement(1702..2694)
                     /locus_tag="VE686_12225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009028204.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HYY85251.1"
                     /translation="MNRRQALQAAAGAAALGIARPAVAQGSTKVRVGYLHTLAVDGQI
                     WVGMERGSFAKQGLDLELRQFNTGLELFQAMVGGSLDMLATGAVLSNFPARGQGKVFL
                     INNVEFATAQLWVREDQGIKGFADLKGKRIATTTGTTAHVFLDTALRANGVDPKDVEL
                     LNQRMPDAVTSFISGAVPAVALWVPFNITVRDKVPGAKKLVDAGAFYPKAAIVGGWAA
                     RNDYYEQNRDVCARLVKGWIEANDYFIANPDAALASLQKNNYSQVPIGDLREQYAAQK
                     MFTSAEWKKLYADGTVTTWLQQVTDFFATVANIPSPVPASTYFDPKLFLSTAGA"
     gene            complement(2721..3539)
                     /locus_tag="VE686_12230"
     CDS             complement(2721..3539)
                     /locus_tag="VE686_12230"
                     /EC_number="7.6.2.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018273202.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HYY85252.1"
                     /translation="MSAGASIRVRFEGVSLEFPTARGMLRVVDDVTYDIREGEFVAVI
                     GPSGCGKTTMMNMLAGFITPTRGRVLLDGKPVDGPGPERGVIFQEYGVFPWLTVRDNI
                     AFGMRLRANRKPSEDVVAVCERYMQLMGLSDFANAYPKTLSGGMRQRLAIARAYAVRP
                     EFLLMDEPFGALDAQTRANMQNLLLQVLETERKTVMLITHSVEEAIYLASKIVMVTAR
                     PARVREIIEVPFSYPRDERLHERPEFGELRSHIREAVMAEYHAQQQVAAVAFSE"
BASE COUNT          606 a         1171 c         1217 g          586 t
ORIGIN      
        1 gtcgtggtcg tgccgcatga ggccgcagct cggacactcg aaacggacgc ggttcgggcg
       61 aaacaggacc tgcgccaagc gcaggaacag ggtgacgccg caaatcatga tgaagaccga
      121 caccatgcgc ccgaaggtgc cggggagcgt gatgtcgccg aagcccgtcg tggtgagcgt
      181 cgtcaccgta aagtagagcg cgtcggcgta attggcgatg tgcggattcg accagtgctg
      241 ggtgtcgtag accacgccgg tcatgacgaa gatgaagacg aacaggttcg tgcccgcaac
      301 aacggcatcc tcgttgcgcc ggaaccagct gctcgcgccg cgcaagcgct ggagaaacgc
      361 gtaggtgcgc agcagtcgaa gcgtccgaag cgcccggagg aaggtgccgc cgccgaccgg
      421 ccacagaaac gagatcgccg caacgatctc ggcgatggtc agcggccgga tcagctcccg
      481 agcgggcctc gcgctgatcg cgatgcgggc gatcaggtcg gccaggacga gaaccccaaa
      541 gacccgattg acccactcag tcacgtcgtt cgcgggcaag aaggacgaca cgatcacgta
      601 gaggatcgcg gtgatgtcga agatgaagag cacgtcacgg aacgtgtgcg cccttggcga
      661 agcgccctcg tagaggtcgc gcagtctatc gatggcgccg tgcgtcacgt ggcgcagtta
      721 agcacggttt cggccgcctt agaggccccg cgtatcatcg atcgggatcc atcgggaaat
      781 cgtgtccacg cgcctccgac cccccgtcac ttgcggcgcg acctcatctc gtcgcggaca
      841 tgggcgtaga gcgccgtcca gtcatgccgg ccgtggcccg cttccgtcgc ttcgacgtag
      901 gcctgctcgg ccgtgcgccc cgtatccagg ccaaggccca cggcctgtcc gagatcgagg
      961 gcgagccgga ggtcctttag cgcaaggtcg atcatgaatc ccgggctgag gtcgcccttg
     1021 aggaccttgg cgggataggt ggttcccatg tgccccgtcc ccgctacggt gccgagcatc
     1081 accttgcgcg caagctccac ctcaagcccg ctcgcctcgg cgagcgccag ggcctcggcg
     1141 gtcgtggcgt tcaacgtgat cgacatgaag ttgttcacga gcttcatgcg cgcgcccgag
     1201 cccacgggcc cgcaatggat gatcgtgtcg cccatgcagt cgaggatcgg ccgggcgcgc
     1261 gcgacatcgc cctcggcccc accgaccatg atcaggagct tgccctcgac ggcgtgctgc
     1321 tgctgccgtc cgacgggcgc gtcgaccatg gcgacgccgc gcccggcgag ccggcgtgcg
     1381 atggcgtcgg tggtagcggg cgcgatggtg ctcatgtcga tgtaaagagc gccctgcccg
     1441 atcccttcgg cgacgccggc gggcccgaac accgcctcct ccacgtggga gctattcggc
     1501 agcatggtga tgacaatgtc ggcgccgcgc gccgcgtccg caggcgatcc cgcgggcgtc
     1561 gctcccgctg ccgccagtgc ttcgacggcc tcaggaagaa tgtcgaaggc gcgcacggaa
     1621 aatccgcgcc tcaggatgtt gagggccatg gggcgaccca tggtgccgag cccgatgaag
     1681 gcgactgtcc ggtccacgcg ctcaagctcc ggcggttgag agaaagagct tcggatcgaa
     1741 gtaggtgctc gcgggaaccg ggctcgggat attggcgacg gtcgcgaaaa agtcggtgac
     1801 ctgctgcagc caggtggtca cggtgccgtc ggcgtagagc ttcttccact cggccgaggt
     1861 gaacatcttc tgggccgcat attgctcgcg caggtcgccg atggggacct gactgtagtt
     1921 gttcttctgg agggaggcca gcgccgcgtc gggattggca atgaagtagt cgttcgcctc
     1981 gatccacccc ttcacgagcc gcgcgcagac gtcgcggttc tgctcgtagt agtcgttgcg
     2041 cgcggcccac ccgccgacga tcgccgcttt cggatagaac gcgccggcgt cgaccagctt
     2101 cttcgctccg ggcaccttgt cgcgcaccgt gatgttgaat gggacccaca gggcgacggc
     2161 cgggacggcg ccggagatga acgaggtcac cgcgtcgggc atgcgctggt tcagcagctc
     2221 gacgtccttg ggatcgacgc cgttggcccg aagcgcggtg tcgaggaaga cgtgggccgt
     2281 ggtgcccgtg gtggtcgcga tgcgcttgcc cttgagatcg gcaaagccct tgatgccctg
     2341 gtcctcgcgc acccatagct gcgctgtcgc aaactcgacg ttgttgatga ggaacacctt
     2401 gccctgcccg cgggcgggga agttcgacag gacggcgccg gtcgccagca tgtcgaggct
     2461 gccgcccacc atggcctgga acagctcgag cccggtgttg aactgccgca gctcgaggtc
     2521 gaggccttgc ttggcgaagc tgccgcgctc catgccgacc cagatctggc cgtcgacggc
     2581 gagcgtgtgc agatagccga cgcgcacctt cgtggagcct tgagcgacgg cggggcgcgc
     2641 tatgcccagg gccgccgctc ctgcggccgc ctgaagcgcc tgtctacggt tcaacatgat
     2701 tctcctccct tgctcgtcgt tcactcggaa aaggccacgg ccgcgacctg ctgttgcgcg
     2761 tgatactcgg ccataactgc ctcgcggatg tgcgagcgca gctcgccgaa ctcgggccgc
     2821 tcgtgcaggc gctcgtcgcg cggatacgag aacggaacct cgatgatctc gcgcacgcgc
     2881 gccgggcgcg ccgtgaccat gacgatcttc gaggcgagat agatcgcctc ctcgacggag
     2941 tgtgtgatca gcatcaccgt cttgcgctcg gtctccagca cctggagcag aaggttctgc
     3001 atgttggccc gcgtctgcgc gtcgagggca ccgaacggct cgtccatcag caaaaactcg
     3061 ggccgcacgg cataggcccg cgcgattgcg aggcgctggc gcatcccccc ggacagcgtc
     3121 tttggatagg cgttcgcgaa atcggaaagg cccatcagct gcatgtagcg ctcgcacacg
     3181 gcgacgacgt cttccgacgg cttgcggttg gcgcgcaggc gcatgccgaa ggcgatgttg
     3241 tcccgcaccg tgagccacgg gaagacgccg tactcctgga agatcacgcc gcgctccggc
     3301 cctggcccgt cgacgggctt gccgtcgagg agcacgcgac cgcgggtcgg cgtgatgaag
     3361 ccggcgagca tgttcatcat cgtcgtcttg ccgcatccgg agggcccgat cacagccacg
     3421 aactcgcctt cgcggatgtc gtaggtcacg tcgtcgacga cgcgcagcat cccgcgagcg
     3481 gtcgggaact cgagcgacac gccttcgaag cgaacgcgaa tggacgcgcc ggcggacatc
     3541 agatgcgctc ctgccaggcg acgagccgcg cgcttgcgcg
//
LOCUS       DASQWN010000653         3709 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_880129, whole genome shotgun sequence.
ACCESSION   DASQWN010000653 DASQWN010000000
VERSION     DASQWN010000653.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 3709)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3709)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3709
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_880129"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            131..1183
                     /locus_tag="VE686_12235"
     CDS             131..1183
                     /locus_tag="VE686_12235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020175608.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HYY85253.1"
                     /translation="MYNTSFLNHEVPMFRPIVTAVAAAATAILLSASAFAQGIPVRVG
                     VIPIVGAAPIFVANGQGWAKADGLDLRFTTFESGPNMIQALASGTIDVYVAGIAPLAV
                     ARTKGIDVKVVAATAIEEMVFVAAPKLAAYFAPGVSAADAFKAYRAKEGKAARLATQP
                     PGSVPNTTLQHWLWEVGKVAKSDAEVVGMGIDATQQAVLAGAVEGASIREPALTIVQT
                     RNPQVKLVAVGGEMFPQQPGTVVAVSGAFLAKNPDAVQKIVTAVVRATELLKTDPAKA
                     APDVEAALGKGITDVATIQKALTSPASRFVADPRVIIDATQKMQAYQVSIGTLDKEVP
                     LDGLFEPRFFERATAR"
     gene            1185..1937
                     /locus_tag="VE686_12240"
     CDS             1185..1937
                     /locus_tag="VE686_12240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019904386.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease subunit"
                     /protein_id="HYY85254.1"
                     /translation="MLSLYRAGLAAAGLALFLGLWEALPRLAVVNPAMLPPPSAIPAA
                     FWRELVSGVWLTAVLSSLQHYLVGLGVGVGAGVGLGIASGMFRTFESATAWVVRVLRP
                     IPGLAWVPFAIIWFGVQPSAAVFIIAVGVFWIVFFATQGAVRAVDRDLVEVAQAFGFR
                     SGFARLVKILLPASTPGILVGVRTALGQAWMAVVAAEIFGVPGVGQRMMQASSLLSTE
                     IVVVYMLTMAALYGLFDTAFVALQGWLLRWKP"
     gene            1925..2680
                     /locus_tag="VE686_12245"
     CDS             1925..2680
                     /locus_tag="VE686_12245"
                     /EC_number="7.6.2.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018044137.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HYY85255.1"
                     /translation="MEAVIELRGLGLAYERDGRRTEVLSGLDLSVARGEFVAIVGESG
                     VGKSTLLRVLSGLARPSAGTMRVPPRGEHRTSLALVFQDARLLPWRRVISNVAFGLEW
                     SGMPRAERHHRAHAVLQLVGLSDLAHRWPHQLSGGQRQRVSLARALAVDPEVLLMDEP
                     FSALDTFTREALQDELLRVRAKTNKTVLFVTHDIDEAVYLADRVIVLAGSPAGAAAEI
                     RVGVAAPRQRGDPALLAVARQLRTELSTNSAAL"
     gene            2746..3186
                     /locus_tag="VE686_12250"
     CDS             2746..3186
                     /locus_tag="VE686_12250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009491219.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OsmC family protein"
                     /protein_id="HYY85256.1"
                     /translation="MKARVKWVDGMMFVGESGSGHAVVMDGAPDSGGRDLGIRPMEML
                     LLGLGGCTAFDVVLILKRGREPVTDCVVEIEAERAETDPKVFTRIHLVYTLTGRALSP
                     AKVERAIKLSKEKYCSASIMLGAVAEITYDFKVVDAAAEAAVPA"
     gene            3221..>3709
                     /locus_tag="VE686_12255"
     CDS             3221..>3709
                     /locus_tag="VE686_12255"
                     /inference="COORDINATES: protein motif:HMM:NF012790.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhodanese-like domain-containing protein"
                     /protein_id="HYY85257.1"
                     /translation="MSADNAFPGPLASPAWLAEHVGHFLVLDIRSADAFAAGHIPGAV
                     HSDYAADGWRVAAGTAGGLLPGVERLAALFGRIGLELGRPVVVVAAGQAPSDFSAAAR
                     VYWTLKASGHGPVSILDGGFAAWSGAALPAAAGPSQPRAAAPYPVRLEGHIRATTADV
                     ERA"
BASE COUNT          496 a         1350 c         1248 g          615 t
ORIGIN      
        1 gggttgaaca gggcgaggcc cccaagggcc ttgatgaatg tgcggcgggt cgacatctgc
       61 actcctgaac cagccgcgcg ctcatattca catggcgact atgtgcatat attactagac
      121 gcgccacgca atgtacaata cgagcttcct caaccacgag gtccccatgt tccgccccat
      181 cgtcaccgcc gtcgcggctg ccgcgaccgc gatcctcctt tccgcttcgg ccttcgcgca
      241 gggcatccct gtgcgggtcg gggtgatccc gatcgtcggc gccgcgccga tcttcgtcgc
      301 caacggccag ggctgggcca aggccgacgg cctcgatctg aggttcacga ccttcgagtc
      361 cgggccgaac atgatccagg cgctcgcgtc cggcaccatc gacgtctacg tcgccggcat
      421 cgctccgctc gcggtggcgc ggaccaaggg catcgacgtg aaggtcgtcg ccgcgaccgc
      481 gatcgaggag atggtcttcg tcgccgcccc gaagcttgcc gcctacttcg cgccgggtgt
      541 ctccgcagcc gatgccttca aggcgtaccg tgccaaggag ggcaaggcag cgcgccttgc
      601 gacgcagccg ccaggctcgg tcccgaacac gacgcttcag cactggctgt gggaggtcgg
      661 gaaagtcgcg aagagcgacg ccgaggttgt tggcatgggc atcgacgcga cgcagcaggc
      721 ggtgctcgcc ggcgccgtcg agggcgcctc gatccgcgag ccggcgctca ccatcgtgca
      781 gacccgcaat ccgcaggtga agctcgtggc ggtcggtggc gagatgttcc cgcagcagcc
      841 cggaacagtc gtcgctgtct cgggcgcgtt cctcgcgaag aatcccgacg ccgtgcagaa
      901 gatcgtcacg gccgtggtgc gcgcgaccga gctcctcaag acggacccgg ccaaggccgc
      961 accggacgtc gaggcggcgc tgggcaaggg catcaccgat gtcgccacga tccagaaggc
     1021 gctgacctcc ccggcgtcgc gcttcgtcgc cgacccgcgc gtcatcatcg acgccacgca
     1081 gaagatgcag gcctaccagg tctccatcgg caccctcgat aaggaggtgc ctctggacgg
     1141 gctgttcgag ccgcggttct tcgagcgcgc aaccgcgcgc tgacatgctc agcctttacc
     1201 gggcggggct cgcggccgcg ggcctcgctc tcttcctggg gctttgggaa gcgctcccgc
     1261 gcctcgccgt cgtcaacccg gccatgctgc cgccgccgag cgccatccca gcggcgttct
     1321 ggcgcgagct cgtctcaggc gtctggctga cggcggtcct ctcgagcctc cagcactacc
     1381 ttgtcggcct cggagtcggg gtgggcgccg gcgtggggct cggcatcgcg agcggcatgt
     1441 tccgcacctt cgagagcgcg accgcgtggg tggtacgcgt cctgcggccc atcccggggc
     1501 ttgcttgggt tcccttcgcc atcatctggt tcggcgtgca gccctcggcc gccgtgttca
     1561 tcatcgccgt cggcgtgttc tggatcgtgt tcttcgccac gcaaggagcc gtgcgcgcgg
     1621 tcgatcgtga tctcgtagag gtcgcccagg ccttcggctt ccgttccggc ttcgcgcgcc
     1681 tagtcaagat tctcctcccg gcgtcgacgc cgggcatcct cgtcggcgtg cgcaccgcac
     1741 tcggccaggc ctggatggcc gtcgtggcgg ccgagatctt cggcgtgccc ggcgtcgggc
     1801 agcgcatgat gcaggcctcg agcctgctct cgaccgagat cgtcgtcgtc tacatgctca
     1861 ccatggccgc gctctacggc ctgttcgaca ccgccttcgt ggccctccag ggatggctct
     1921 tgcgatggaa gccgtgatcg agctgcgcgg cctcggcctc gcctacgagc gcgacggccg
     1981 caggaccgag gtgctgtctg ggctcgacct ctccgtcgcg cgcggcgagt tcgtcgccat
     2041 cgtgggcgag tcgggcgtcg gcaagtcgac gcttttgcgc gtgctgagcg gccttgcgcg
     2101 cccgagcgcc ggcacgatgc gcgtgccgcc ccgcggcgag caccgcacct cgctcgctct
     2161 cgtgttccag gacgcccggc tcctgccgtg gcgccgcgtc atctcgaacg tcgccttcgg
     2221 cctcgaatgg agcggcatgc cccgggcgga gcgccatcac cgggcccatg ccgtgctgca
     2281 gctcgtcggc ttgagcgacc tcgcccaccg ctggccgcac cagctttcag gcgggcagcg
     2341 ccagcgcgtt tcgctcgccc gcgccctcgc ggtcgatccg gaggtgctgc tcatggacga
     2401 gccgttctcg gccctcgaca cgttcacgcg cgaggcgctg caggacgagc tcctgcgggt
     2461 ccgggcaaag accaacaaga ccgtgctctt cgtcacccac gacatcgacg aggccgtgta
     2521 tctcgccgat cgggtgatcg tgctcgcggg ttcgccggcc ggcgccgccg ctgagattcg
     2581 ggtgggcgtg gccgcgccgc gccagcgcgg cgaccctgcc ctgctggccg tcgcacgcca
     2641 gctccgcacc gagctctcca ccaactcggc ggcactgtga gatgcaccgc gcttgacgac
     2701 tacggcgagc aggcgcaccc gtcccattgt aggggagccg tcgtgatgaa agcgcgcgtg
     2761 aagtgggtcg acggcatgat gttcgtcggc gagtcgggca gcggccatgc cgtcgtgatg
     2821 gacggcgccc cggatagcgg cggccgggat ctcggcatcc gcccaatgga aatgctgctc
     2881 ctcggcctcg gcggctgcac cgccttcgac gtggtgctga tcctcaagcg cggccgtgag
     2941 cccgtgaccg actgcgtggt cgagatcgag gccgagcggg ccgagacgga cccgaaggtc
     3001 ttcacccgca tccacctcgt ctacacgctg accggacggg cgctgtcgcc cgccaaggtc
     3061 gagcgcgcga tcaagctgtc gaaggagaag tactgctcgg cctcgatcat gctcggcgcc
     3121 gtcgccgaga tcacctatga cttcaaggtc gtcgacgcgg ccgccgaagc cgccgttccg
     3181 gcctgacccg tcccatccag ccaccgaagg atgtcgcccc ttgtccgctg acaatgcttt
     3241 cccgggtccc ctcgcctctc cggcctggct cgccgagcac gtgggccact tcctggttct
     3301 cgacatccgc tccgccgacg cgttcgcggc cgggcatatc cccggcgccg tgcacagcga
     3361 ctacgccgcc gacggctggc gcgtcgccgc cggcacggca ggaggcctgc tccctggtgt
     3421 cgaaagattg gccgcgctct tcggacggat cgggctcgag ctgggccgcc ccgtcgtggt
     3481 cgtggccgcg ggccaggcgc cgagcgattt cagcgccgcc gcccgggtct actggacgct
     3541 gaaagcgtcg ggtcacggcc ctgtgtcgat cctcgacggc ggtttcgcgg cctggtcggg
     3601 cgccgccctc ccggccgcgg caggaccctc gcagccgcgc gccgccgcgc cctaccccgt
     3661 gcgcctcgag gggcacatcc gcgcgaccac cgcggacgtg gagcgtgca
//
LOCUS       DASQWN010000654         2856 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_363751, whole genome shotgun sequence.
ACCESSION   DASQWN010000654 DASQWN010000000
VERSION     DASQWN010000654.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2856)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2856)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2856
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_363751"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(103..915)
                     /locus_tag="VE686_12260"
     CDS             complement(103..915)
                     /locus_tag="VE686_12260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012753330.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008173 - RNA methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA];
                     GO_process: GO:0001510 - RNA methylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA methyltransferase"
                     /protein_id="HYY85258.1"
                     /translation="MPAYVPVNDRDDPRVASYRDIRERDLVGRGGRFVAEGEVVLAVL
                     LTRSRHAAESCLVSEKRLPAIAPMLARLADDTPVYVASQAVIDAVTGFHIHRGVLALG
                     RRADAPQPAALLRSLPASALVVVLVGLTNHDNVGGVFRNAAAFGADAVLLDSGTCDPL
                     YRKAIRVSVGGTLIVPFARAERASDILDLLAREGFDAVALSPAGAEPLAVAERRARTA
                     LVLGTEGPGLPPEILARVRSVRIPMAGGFDSLNVSTASGIALHHFANAPASR"
     gene            complement(921..1220)
                     /locus_tag="VE686_12265"
     CDS             complement(921..1220)
                     /locus_tag="VE686_12265"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY85259.1"
                     /translation="MPDSSSVARETSLAVKLLLARVGELAGVDPSARRDPRSILLAVP
                     HDERNRVVAVLEEIQSRGSAGADGLVSGARLLLDAARELWTPHETEPAPDDGGTP"
     gene            1362..2033
                     /locus_tag="VE686_12270"
     CDS             1362..2033
                     /locus_tag="VE686_12270"
                     /EC_number="3.1.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006610322.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005829 - cytosol [Evidence IEA];
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dienelactone hydrolase family protein"
                     /protein_id="HYY85260.1"
                     /translation="MGETIRLQASDGFELSAYVARPAGTPKGGLVVIQEIFGVNGHIR
                     SVVDGYAAEGFLAIAPALFDRIEPGLELGYTPPDIERGRDLKGRSTTESALSDVEAAM
                     RHVAEAGKVGVVGYCWGGFLAWVSATRLTGVSAAVSYYGGGIGAVADEQPNCPVLMHF
                     GEKDHAIPLTEVDKVRAAHPTGVEIHVYPSGHGFNCDERGSYDPDSSRIARERSLAFL
                     NRHLR"
     gene            complement(2037..2786)
                     /locus_tag="VE686_12275"
     CDS             complement(2037..2786)
                     /locus_tag="VE686_12275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020092409.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphodiester glycosidase family protein"
                     /protein_id="HYY85261.1"
                     /translation="MRPVLLRRLAAFLLLVLALAPAGARAQEPCRTVPFGGAEYAVCT
                     FDLRRYRIDTVLRAPDGQPYGSLDKFTRAAEGAALVAAMNAGMYQPDLSPAGLYVEKG
                     RMLKPANTAGGHGNFHLKPNGVFYTSGERAGVLETGAYLWTKPAAESATQSGPMLVIN
                     GRIHPKISDQGVSRKVRNGVGVRDGRTVVFAISNGPVTFGEFARLFRDELGCPNALFL
                     DGSISSLYAPSISRRDGFWPVGPILAASRRT"
BASE COUNT          434 a          967 c         1073 g          382 t
ORIGIN      
        1 cctcccgggg cgaaagcgtg cggttgcgat aggcggcaag gagcgcggcg ccgtcgagtg
       61 agaggatgtc ggtcatgtcg ggatcctgcg ggaaggcgga cgttagcgcg aagccggggc
      121 gttggcgaaa tggtgcaggg cgatgccgct cgccgtcgag acgttgaggg agtcgaagcc
      181 ccccgccatg gggatccgca cgctgcgcac ccgcgcgagg atctcgggcg gcagccccgg
      241 accttcggtg ccgaggacga gggcggtccg cgctcgccgc tcggccaccg ccagcggctc
      301 tgcgcccgcg gggctcagcg cgacggcgtc gaagccctcc cgcgcaagaa ggtcgaggat
      361 gtcggacgcg cgctcggcac gcgcgaaggg cactatcagg gtgccgccga ccgacacgcg
      421 gatggccttg cggtagagcg ggtcgcaggt gccgctgtcg aggagcacgg cgtccgcgcc
      481 gaacgcggcc gcgttgcgaa agacgccgcc gacgttgtcg tggttggtga gcccgacgag
      541 cacgaccacc aatgcggaag caggcaggct ccgcagcagc gctgcgggct gcggtgcatc
      601 ggctcgccgc ccaagcgcga ggacgccgcg atggatgtgg aagcccgtga cggcgtcgat
      661 cacggcctgg cttgccacgt acaccggcgt gtcgtcggcc aggcgtgcga gcatcggtgc
      721 gatggccggc aggcgcttct cagaaacgag gcaggactcg gcggcatggc gcgaccgcgt
      781 cagcagcacg gcgagcacga cctcgccctc ggccacaaac cgtccgccgc gaccgacgag
      841 gtcgcgctcg cggatgtccc gatagcttgc gacgcgcggg tcgtcgcggt cgttcacggg
      901 cacgtaggcc ggcatgcgcg tcagggcgtc ccgccgtcgt ccggcgcagg ctcggtctcg
      961 tgcggggtcc agagctcgcg cgccgcgtcg agcagaagtc gcgccccgct gacgagtccg
     1021 tcggcgcccg cggaaccgcg gctctggatt tcctcgagca ccgccaccac gcggttccgc
     1081 tcgtcgtgcg gcacggcgag gaggatcgag cgggggtcgc gccgcgcgga gggatcgacg
     1141 cccgcgagct cgccgacgcg ggcgagaagc agcttaaccg caagagacgt ctcgcgcgcg
     1201 accgacgatg aatccggcat ggctctgtta tgaaacgccc gcgcgccgcg cgccagaccc
     1261 gcgtggaggg gagagattcc ccggcgggca cgcttatgga gccctcgccg gctcgctata
     1321 gtcgcgcggg ccgccaggga gcggcctcag ggaggcgagc agtgggcgag acgatccggc
     1381 ttcaggcgtc cgacggcttc gagctgtcgg cctatgtagc gcgcccggcg gggacgccga
     1441 agggcggcct cgtcgtgatc caggagatct tcggcgtcaa cgggcacatc cgcagcgtcg
     1501 tggatggcta tgcagccgaa ggcttcctcg ccatcgcgcc ggcgctgttc gaccgcatcg
     1561 agcccgggct ggagctgggc tatacgccgc ccgacatcga gcgcgggcga gacctcaagg
     1621 ggcgctccac gaccgagagc gcgctcagcg acgtcgaagc agccatgcgg cacgtcgcgg
     1681 aggccggcaa ggtcggcgtc gtcggctact gctggggcgg cttcctcgcc tgggtgtcgg
     1741 ccacccgcct gaccggcgtg tcggcagcgg tgtcctacta cggcggcggg atcggcgccg
     1801 tcgcggacga gcagccgaac tgcccggtgc tcatgcactt cggtgagaag gaccacgcca
     1861 ttcctttgac ggaggtcgac aaggtccgcg ccgcgcaccc gaccggcgtc gagatccacg
     1921 tctacccgtc aggccacggc ttcaactgcg acgagcgcgg cagctatgac cccgacagct
     1981 cgcgcatcgc acgcgagcgc tcgctggcgt tcctgaaccg gcacctgcgc tgaggctcag
     2041 gtccgccggg aggcggcgag gatcggcccg acgggccaga acccgtcacg gcggctgatc
     2101 gagggcgcgt aaaggctcga aatcgagccg tccaggaaca gggcgttcgg gcagccgagc
     2161 tcgtcccgga acaggcgggc gaactcgccg aaggtgaccg gcccgttcga gatggcgaac
     2221 accaccgtac gcccgtcgcg gacgccgacg ccgttgcgga ccttccgcga cacgccctgg
     2281 tccgaaatct tggggtgaat ccggccgttg atgacgagca tcggccccga ttgcgtcgcc
     2341 gactcggcag cgggcttcgt ccagaggtag gcgccggtct cgaggacgcc ggcgcgctcg
     2401 ccgctcgtgt agaacactcc gttcggcttg aggtggaagt tgccgtgtcc gcctgccgtg
     2461 ttggcgggct tcagcatgcg gcccttctcg acgtagagcc ccgctggcga caggtcgggc
     2521 tggtacatgc cggcgttcat ggccgcgacg agcgccgccc cttcggcggc gcgcgtgaac
     2581 ttgtcgagtg agccgtaggg ctggccgtct ggcgcccgca ggacggtgtc gatgcggtag
     2641 cgccgcagat cgaaggtgca gaccgcgtac tccgcccccc cgaacggcac ggtccggcac
     2701 ggctcctgcg cccgtgcacc cgcgggtgcg agcgcgagaa cgaggagcaa gaaggcggcg
     2761 aggcggcgaa gcaggacggg gcgcatctcc tcggaatacc cggatttggc tgcggccgcg
     2821 agccacctta ggggcgcgct ggacagggtg ccggcg
//
LOCUS       DASQWN010000655         3135 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_482796, whole genome shotgun sequence.
ACCESSION   DASQWN010000655 DASQWN010000000
VERSION     DASQWN010000655.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 3135)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3135)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3135
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_482796"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            184..720
                     /gene="ppa"
                     /locus_tag="VE686_12280"
     CDS             184..720
                     /gene="ppa"
                     /locus_tag="VE686_12280"
                     /EC_number="3.6.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012332509.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004427 - inorganic diphosphate
                     phosphatase activity [Evidence IEA];
                     GO_process: GO:0006796 - phosphate-containing compound
                     metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="inorganic diphosphatase"
                     /protein_id="HYY85262.1"
                     /translation="MQIDAIAIGSNPPHDVNVVIEVPLGGEPIKYEMDKAAGTLVVDR
                     FLYTAMRYPGNYGFVPHTLSGDGDPCDVLVANTRAIVPGAVMSVRPVGVLLMEDEAGQ
                     DEKIVAVPSRKLTARYDRVANHTDLPEITLKQIEHFFEHYKDLEPGKWVKVVRWGDAD
                     EARRLIEEGIARARAGAA"
     gene            1108..1386
                     /locus_tag="VE686_12285"
     CDS             1108..1386
                     /locus_tag="VE686_12285"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY85263.1"
                     /translation="MTGFETLPGDDPASVLWCDGECCDLEEPRLRVDFERFDDALRFI
                     RSEMPLGRRHTVWVITADRLLPPEQVRDLISKLRHYPAPRRIDSRPWP"
     gene            1430..2185
                     /locus_tag="VE686_12290"
     CDS             1430..2185
                     /locus_tag="VE686_12290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015931619.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="damage-inducible mutagenesis protein"
                     /protein_id="HYY85264.1"
                     /translation="MAHAGRGLLLADLRQRIERMEGGARRRGSTLPFGVRAIDRRLPA
                     GGLALGCLHEFAGASAAFEHAAAPISFTASLLARLKGPVLWCVKRRDLFAPGLTTAGL
                     KPERVIYAETFRDADVLPLMEEGLRSPGLAGVVAEASQMSFDASRRLQLAAEASGVTA
                     FVVRRWKAASDAALARPTAAVTRWRIASLPSTELTAPGIGRARWSVELLRCRGAEPSA
                     WIMEACDETGRLAVPADLADRPLQTPQRRAGAG"
     gene            2103..>3135
                     /locus_tag="VE686_12295"
     CDS             2103..>3135
                     /locus_tag="VE686_12295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017483535.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase Y family protein"
                     /protein_id="HYY85265.1"
                     /translation="MRRVVSLFLPTWPTDRFRRRNGGPARDEPLVTAVREGSRRVLAC
                     VDAAARALGLTPAMTVAHAQALVPGLQMIEAAPEEDAEALARLALWCLRYAPIVAPDP
                     PDGIVVDIAGAAHLHGGEAPLLRDLVRRLRRTGLDAKVAVADTAGAAWAMARYGPQGV
                     VPPGATAPAISELPLEALRLPRETVESLRAAGFERIGEIVEKPKGPFIRRFGPELVRR
                     LDQALGREPDPLEPLFPAGTPTRRRAFAEPIGAPEVLERITAGLVGDLCRDLEARGEG
                     ARRLDLVFRRVDNLRQGVRIATARPSRDPRHLLRLFGERLSLVDPGFGIEEAVLMASV
                     VEPFAHSQIV"
BASE COUNT          455 a         1108 c         1073 g          499 t
ORIGIN      
        1 acgtccgagc gcgcgggttc tacgagcggc tgggtggccg gccggtcgcc gagacaacgg
       61 agcaggtcgc cggaatgccc ctcggcaaag tcgcgtacct gttcgggtag gcggctgcga
      121 gggctcccgc cgtgcgtgca gaggtgctag gagcgccgcc caaccgcagc cggaactcat
      181 ctcatgcaga tcgacgcgat tgccatcggt tcgaatccgc cgcacgacgt gaacgtcgtc
      241 atcgaggtgc cgctcggggg cgagccgatc aaatacgaga tggacaaggc ggcgggcacc
      301 ctggtcgtgg accgcttcct gtacacggcc atgcgctacc ccgggaacta tggcttcgtc
      361 ccgcacaccc tctcggggga cggcgatcca tgcgacgttc tcgtcgccaa cacgcgcgcg
      421 atcgtccccg gagcggtgat gagcgttcgg cccgtcgggg tgctcctcat ggaggacgag
      481 gccgggcagg acgagaagat cgtcgccgtc ccctcgcgca agctcacggc gcgctacgac
      541 agggtcgcca atcatacgga cctgccggag atcaccttga agcagatcga gcacttcttc
      601 gagcactaca aggatctgga gcccggcaaa tgggtcaagg tggtgcgctg gggtgatgcc
      661 gacgaggcgc ggcgcctgat cgaagaagga attgcgcgcg caagagcagg ggcggcctaa
      721 gcagcggcgg ccacccgcaa tcggcgtgga accaaagcat ctgaacaact gttcataatg
      781 tggaagctct ttcgcaagct aggcttccgc ttcatggacg aactctcctt cgagccgagc
      841 cccgtcgcgt gcattgcgcg gcggggcttt tcgcgtcgga ggcgggcggc aggtttaaag
      901 gatgtgttaa gcacacgtcc gtagacgacg gggcgccgcg ccgtggccgg cacctcatgg
      961 aaagccccgt cctgccccgt ggtccgcagg gcggggcttt tttgctccgc gattggcgac
     1021 tggctcttcg taaacgctgg tgtgctttac tgacgcagca ttcgccggcc ccagtaggca
     1081 catcactcac gtatcggacg cgggcttttg accggttttg aaacccttcc cggagacgac
     1141 cccgcatccg ttctgtggtg cgatggcgag tgctgcgatc tcgaagaacc ccgcctgcgg
     1201 gtggatttcg agcgcttcga cgacgcgctg cggttcatcc ggtcggagat gccgctcggt
     1261 cgcagacaca ccgtctgggt catcaccgcc gaccgcctac tgccgcccga gcaggtccgc
     1321 gacctcattt caaaactgag gcactacccc gcgccgcggc ggattgactc acggccgtgg
     1381 ccgtgaacag aataagaaca acaccacttc gaggacgatt gggcaaggca tggcgcatgc
     1441 cgggcgaggg cttctgcttg ccgatctgcg gcagcggatc gaacgcatgg agggcggcgc
     1501 gaggcggcgc ggctcgaccc tgccgttcgg cgtgagagcc attgatcggc gcctgccggc
     1561 gggcggcttg gcgctcggct gcctgcacga gttcgcaggg gcgagcgcgg ctttcgagca
     1621 tgccgcggcg ccgatctcgt tcacggccag cctcctggcg cggctcaagg gaccggtgct
     1681 gtggtgcgtc aagcggcgcg acctcttcgc tccgggcctc accacggcgg gcctcaagcc
     1741 tgagcgcgtc atctacgccg agacctttcg cgacgccgac gtcctgcccc tgatggagga
     1801 gggcctgcgc tcgcctggcc tcgcgggagt ggtagccgaa gcgtctcaga tgtcgttcga
     1861 cgcctcgcgg cggctgcaac tcgccgccga agcctcgggc gtcaccgcct tcgtggtccg
     1921 gcgctggaag gccgcgtccg atgccgcgct cgcgcgcccg acggccgcgg tgacgcgctg
     1981 gcgcatcgcc tccctaccct cgaccgagct cacggcgccc ggcatcggcc gcgcgcgctg
     2041 gtcggtcgag ctcctgcgct gccgcggcgc cgaaccctcc gcgtggatca tggaggcttg
     2101 cgatgagacg ggtcgtctcg ctgttcctgc cgacctggcc gaccgaccgc ttcagacgcc
     2161 gcaacggcgg gccggcgcgg gatgagcccc tcgtcaccgc cgtccgcgag ggctcgcgac
     2221 gcgtcctcgc gtgcgtcgac gcggcagcgc gcgcgcttgg cctcacgccc gcaatgacgg
     2281 tcgcgcacgc gcaggccctc gtgccgggcc tgcagatgat cgaggccgcg ccggaggagg
     2341 acgccgaggc gctggcgcgc ctcgcgctgt ggtgcctgcg ctacgcgcct atcgtcgcgc
     2401 ccgatccgcc cgatggcatc gtcgtcgaca tcgccggtgc ggctcacctg cacggcggcg
     2461 aggcccctct cctgcgcgac ctcgtgcgcc gtctgcgccg gaccggcctc gacgccaagg
     2521 tcgccgtcgc cgacacggcc ggtgccgcct gggccatggc acgctacggc ccgcaaggcg
     2581 tagtgccacc cggcgcgacc gcgccggcga tctcagagct tccgcttgaa gccctgcggc
     2641 tgccgcgcga gaccgtcgag tcgttacgtg ccgccggctt cgagcgcatt ggtgagatcg
     2701 tcgagaagcc gaaggggcct ttcatccgcc gcttcggccc cgagctcgtc cgccgcctcg
     2761 accaggcact cggccgcgag cccgatccgc tagagccgct ctttcccgcc ggaacaccga
     2821 cccgccgacg cgccttcgcc gagccgatcg gcgcgcccga ggtcctcgag cgcatcacgg
     2881 ccggcctcgt gggcgacctc tgccgcgacc tcgaggcccg gggcgagggc gcacgccgcc
     2941 tcgacctcgt cttccgccgg gtcgacaacc tgcgccaggg cgtccgcatt gccacggcgc
     3001 ggccgtcgcg cgatccgcgc cacctcctgc gcctgttcgg tgagcgcttg agtctcgtcg
     3061 atcccggctt cggcatcgag gaggcggtcc tcatggcgag cgtggtcgag ccgtttgccc
     3121 atagccagat cgtcg
//
LOCUS       DASQWN010000656         4329 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_282120, whole genome shotgun sequence.
ACCESSION   DASQWN010000656 DASQWN010000000
VERSION     DASQWN010000656.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 4329)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4329)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4329
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_282120"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..137
                     /locus_tag="VE686_12300"
     CDS             <1..137
                     /locus_tag="VE686_12300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012047120.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="UDP-glucose 6-dehydrogenase"
                     /protein_id="HYY85266.1"
                     /translation="DLPRLKRIMAAPVVVDLRNVYRPEDMKRHGFTYLSIGRPPIEAA
                     "
     gene            137..967
                     /locus_tag="VE686_12305"
     CDS             137..967
                     /locus_tag="VE686_12305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008971789.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HYY85267.1"
                     /translation="MAPAIDYEAEYNNRARVPEHPEIIAGWARDAAAYREAAAGRFES
                     RAYGPSERQRMDVFRPDGEARGATVVFIHGGYWQAQDRPSFSHMARGLNAHGIAVAVP
                     GYDLCPQVRVGDIVDQMRAACRALSRDTSRLVVTGNSAGGHLTACMAATDWRGLDPAL
                     PADFVGAAYAISGIFDLKPLLSTYVNNATRMDEAEAERLSPLFWPPPAGRTFDAVVGG
                     DESAEYLRQSRTIAQVWGAAGVKTRFEAVPGANHFTVIAPLADPQSAMTRRLAELALA
                     "
     gene            1034..1270
                     /locus_tag="VE686_12310"
     CDS             1034..1270
                     /locus_tag="VE686_12310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008875966.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Lrp/AsnC family transcriptional regulator"
                     /protein_id="HYY85268.1"
                     /translation="MQTFFVEIKCKLGKTYAVASALADREIASEIYSTAGNYDILAKF
                     HVDDEIDIGHFVAENVQVIPEIQDTRTIITFKAF"
     gene            complement(1278..2435)
                     /gene="argE"
                     /locus_tag="VE686_12315"
     CDS             complement(1278..2435)
                     /gene="argE"
                     /locus_tag="VE686_12315"
                     /EC_number="3.5.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015685382.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008777 - acetylornithine deacetylase
                     activity [Evidence IEA];
                     GO_process: GO:0006592 - ornithine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetylornithine deacetylase"
                     /protein_id="HYY85269.1"
                     /translation="METGRVLEILSSLVAFDTTSRNSNLAIIDWIEGFLTPLGFSCER
                     IHDATGVKANLFATLGPARVPGIILSGHTDVVPVDSQTWTSDPFALRVADGRAYGRGA
                     CDMKGYLAVCLAAAETLDAASLKKPVHLAFSYDEEVGCVGARGMVEWLRDSPLQPEAC
                     FVGEPTQMGVVVGHKSKRSVRVGVRGKTCHSSLAPLGVNAAEYAARLVAEIARMREWL
                     ASDGPQDPLYDVPYSTPHVGILRGGTALNIVPDEAEIVFEIRTIGADDPAALVDRVMA
                     YARDELEPKMRAVDPDCGIDFDVFGAVVGLDTPPGDPVVTLAKSLAGRNDHSKVAFGT
                     EGGLFQTIAGVPTVVIGPGSIDQAHKADEWIALSELEKCGRFVERVIATCR"
     gene            2607..4223
                     /locus_tag="VE686_12320"
     CDS             2607..4223
                     /locus_tag="VE686_12320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019401279.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HYY85270.1"
                     /translation="MRQAWKRASALGLAAALTAVPALAQELKIGLSAEPTSIDPHFHN
                     LTPNNALRAHIFDALLAQDAEQKLKPALATSWRAVDDTTWEFKLRPGVKFSNGMEFSA
                     RDAIYTVCRIPTVENSPSSMNSHVRGITAMEVPDPQTLIIKTAGPQPILPINLSVLGI
                     LSAQVNGAENVKYRVGGCENLGTPPKSADFNDPAKAIGTGPFKLANYTRGTHILLERN
                     DSHWGDKPQWDKVTMRPMTSPGARVAALIAGDVDFIESPPIQDFDKIKGAGFQISEGL
                     SNRIIYLHLDQFQDPAWKTPGVKGTDKNPFLDKRVRQAVSKAINRQAIVDRIMGGHAV
                     AAGELLPYPLFGATKDMPVEKYDPDGAKKLLADAGYPNGFEVTLGTPNDRYINDEKIA
                     QAVAQMLTRVGIKTGVDAMTASTFFTRRNKFDFSIYLAGWGADTGEMSNSMNSLVVTL
                     QPDKGLGPTNRGRYSNPKVDELVVKAMATIDDAAREKLLQEASKLAMSDYGIIPLHFE
                     VTPWAFKKGLSYKPRTDQYTLATEIRQAGS"
BASE COUNT          743 a         1561 c         1425 g          600 t
ORIGIN      
        1 tcgacctgcc gcgcctcaag cgcatcatgg ccgcgcccgt ggtcgtcgac ctgcgcaacg
       61 tctatcgccc cgaggacatg aagcgccacg gcttcaccta cctcagcatc ggccgccctc
      121 ccatcgaggc ggcgtgatgg cgccggcgat cgactacgag gcggagtaca acaaccgcgc
      181 ccgcgtgccc gagcacccgg agatcatcgc cggctgggcg cgcgacgccg cggcctaccg
      241 cgaggccgcg gccggccgtt tcgagagccg cgcctacggc ccgagcgagc gccagcgcat
      301 ggacgtcttc cgccccgacg gcgaggcccg cggcgccacg gtggtgttca tccacggcgg
      361 ctactggcag gcgcaggacc ggccctcgtt cagccacatg gcgcgcggcc tcaacgcgca
      421 cggcatcgcc gtggcggtgc ccggctacga cctgtgcccg caggtccggg tcggcgacat
      481 cgtcgaccag atgcgcgccg cgtgccgggc gctcagccgc gacacgtcac ggctcgtggt
      541 aacgggcaac tccgccggcg ggcacctcac cgcctgcatg gcggcgacgg actggcgcgg
      601 cctcgatccg gcgctgccgg cggacttcgt gggcgcggcg tacgccatct cgggcatctt
      661 cgacctcaag ccgctgctct cgacctacgt caacaacgcc acccgcatgg acgaggccga
      721 ggccgagcgt ctgagcccgc tgttctggcc gccgcccgcg ggccgcacct tcgacgccgt
      781 ggtgggcggc gacgagagcg ccgagtacct gcgccagagc cgcaccatcg cgcaggtctg
      841 gggcgcggcc ggggtcaaga cccgcttcga ggccgtcccg ggggcgaacc acttcaccgt
      901 catcgcgccg ctcgccgatc cgcagtccgc gatgacgcgg cggctagccg agctggcgct
      961 tgcctgaccg cccgaggatg acgggctttg ggcggcgtgg catagaggcc tctcgcggat
     1021 tccggagcgc ccgatgcaga ccttcttcgt cgagatcaaa tgcaagctcg gcaagaccta
     1081 tgcggtcgca agcgcgctcg ccgaccggga gatcgcgtcg gaaatctact cgacggccgg
     1141 caactacgac atcctggcca aattccacgt cgacgacgag atcgacatcg gccacttcgt
     1201 cgccgagaac gtccaggtga tccccgaaat ccaggacacc cggaccatca tcaccttcaa
     1261 ggcgttctag aacgccgtca ccggcacgtc gcgatcacgc gctcgacgaa cctgccgcac
     1321 ttctccagct ccgacagggc gatccattcg tcggccttgt gggcctggtc gatggagccg
     1381 gggccgatga cgacggtcgg gacacccgcg atggtctgga acaggccgcc ctcggtgccg
     1441 aaggcgacct tggaatggtc gttgcggccg gcgagcgact tcgccagcgt gacaaccgga
     1501 tcgccgggcg gcgtgtccag gccgacgacc gcgccgaaca cgtcgaagtc gatcccgcaa
     1561 tcgggatcga cggcacgcat cttcggctcg agctcgtcgc gcgcgtaagc catgacccgg
     1621 tcgacgaggg ccgccgggtc gtcggcgccg atggtgcgga tctcgaagac gatctcggcc
     1681 tcatccggca cgatgttgag cgcggtcccg ccgcgcagga tgccgacgtg aggcgtcgaa
     1741 tacggcacgt cgtaaagcgg gtcctgcggc ccgtcgctcg cgagccactc gcgcatgcga
     1801 gcgatctcgg cgacgagccg cgcggcgtat tcggcggcgt tgacgccgag cggcgcaagc
     1861 gacgaatggc aggtcttgcc gcgcaccccc acgcgcacgc tgcgcttgct cttgtgcccg
     1921 acgacgacgc ccatctgcgt cggctcaccg acgaagcagg cctcgggctg cagggggcta
     1981 tcgcgcagcc actcgaccat gccgcgcgcg ccgacgcacc cgacctcctc gtcgtacgag
     2041 aaggcgaggt ggacgggctt cttgaggctc gccgcgtcga gcgtctcggc ggcggcaagg
     2101 cagaccgcga ggtagccctt catgtcgcag gcgccgcgcc cgtaggcgcg cccgtccgcc
     2161 acccgcagcg cgaagggatc gctcgtccac gtctggctgt cgaccggcac cacgtcggtg
     2221 tggccggaaa ggatgatgcc cggcacacgc gccggcccga gcgtcgcgaa caggttggcc
     2281 ttcacgccgg tcgcgtcgtg gatgcgctcg cacgagaagc cgagcggcgt gaggaaacct
     2341 tcgatccagt cgatgatcgc caggttcgag ttgcggctcg tcgtgtcgaa cgccacgagc
     2401 gacgacaaaa tctcgaggac gcgccccgtc tccatgaaga cctcctgctc ggatgccagc
     2461 aggcttagcc ttgccggtcc gccctcggca agcgcgcgcg gcgcggggca gggtcgatcc
     2521 tcgcttcgct ttgggctaga acgcttcacc aaggcgacat cgacggcccg cggcgacgcc
     2581 gggcgaccgg gaaccaggag aaggcaatga ggcaggcatg gaaacgggcg agcgcgctgg
     2641 gattggcggc ggcgctgacg gcggtgccgg cgctggcgca ggagctgaag atcggcctgt
     2701 cggccgagcc gacctccatc gacccgcact tccataacct gacgcccaac aacgcgctgc
     2761 gagcccacat cttcgacgcg ctgctggcgc aggacgccga gcagaagctg aagcccgcgc
     2821 tggcgacctc ctggcgcgcc gtcgacgaca ccacctggga gttcaagctg cgcccgggtg
     2881 tgaaattctc gaacggcatg gagttctcgg cccgcgacgc gatctacacc gtctgccgca
     2941 tcccgaccgt cgagaactcg ccctcgtcga tgaactcgca cgtgcgcggc atcaccgcca
     3001 tggaagtgcc ggatccgcag accctgatca tcaagaccgc gggcccgcag cccatcctgc
     3061 ccatcaacct gtcggtgctc ggcatcctgt cggcgcaggt gaacggcgcc gagaacgtga
     3121 agtatcgcgt gggcggctgc gagaacctcg gcacgccgcc gaagtcggcc gacttcaacg
     3181 atcccgccaa ggccatcggc accgggccgt tcaagctcgc caactacacc cgcggcacgc
     3241 acatcctgct cgagcgcaac gactcgcatt ggggcgacaa gccgcaatgg gacaaggtca
     3301 ccatgcggcc gatgacgagc cccggcgccc gcgtcgctgc cctcatcgcc ggcgacgtcg
     3361 acttcatcga gagcccaccg atccaggact tcgacaagat caagggcgcc ggcttccaga
     3421 tctccgaggg tctgtcgaac cgcatcatct atctgcacct cgaccagttc caggacccgg
     3481 cctggaagac gcccggcgtg aagggcaccg acaagaaccc cttcctcgac aagcgcgtgc
     3541 gccaggccgt gtcgaaggcc atcaaccggc aggcgatcgt cgaccgcatc atgggcgggc
     3601 acgccgttgc cgcaggtgag ctcctgccgt acccgctgtt cggcgccacg aaggacatgc
     3661 cggtcgagaa gtacgatccg gacggcgcca agaagctcct cgcggacgcg ggctacccga
     3721 acggcttcga ggtgaccctc ggcacgccga acgaccgcta catcaacgac gagaagatcg
     3781 cgcaggccgt ggcgcagatg ctcacccgcg tcggcatcaa gacgggcgtc gacgccatga
     3841 cggcctcgac cttcttcacc cgccgcaaca agttcgactt ctccatctac ctcgccggct
     3901 ggggcgccga cacgggcgag atgtcgaact ccatgaactc gctcgtcgtg accctgcagc
     3961 ccgacaaggg cctcgggccg acgaaccgcg gccgctactc gaacccgaag gtcgacgagc
     4021 tcgtggtcaa ggccatggcg accatcgacg acgcggcgcg cgagaagctc ctgcaggagg
     4081 cctcgaagct cgccatgagc gactacggca tcatcccgct ccacttcgag gtgacgccct
     4141 gggccttcaa gaagggcctc agctacaagc cccgcaccga ccagtacacg ctcgcgaccg
     4201 agatccggca ggcggggtcc taaatcctct cccgcttaag cgggagaggt tgagtcggtg
     4261 aagccgaccg ggtgagggcc tgcgccgagc gcgcaagcgg ccgccgccgg gtcgtcggct
     4321 gcgaccttc
//
LOCUS       DASQWN010000657         2378 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_484755, whole genome shotgun sequence.
ACCESSION   DASQWN010000657 DASQWN010000000
VERSION     DASQWN010000657.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2378)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2378)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2378
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_484755"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..198
                     /locus_tag="VE686_12325"
     CDS             <1..198
                     /locus_tag="VE686_12325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015241398.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY85271.1"
                     /translation="LYFDTFPDLTGLDPVAECEVNIKTVRRLLAVAESLDGDNQLGEA
                     MARQDAVASQHIINAALFGSA"
     gene            266..1321
                     /locus_tag="VE686_12330"
     CDS             266..1321
                     /locus_tag="VE686_12330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018010157.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="substrate-binding domain-containing protein"
                     /protein_id="HYY85272.1"
                     /translation="MVFSIKTLAAACALSLLAGTGFAQELKPLNSDTETDRVAWSELQ
                     TKFGDVPAAPAGTSIGGVSKTLTNEYWRTLGEGYAAYARKAGVEIAYQAAQSEGDQLG
                     QLSIAENLISQGFDALLLSPQTDNNLQPALESAEAQGIPVVNVNDAVIPGARHYVGNV
                     QRDNGVRVAKWFLENRPTGGKVAVIEGQAGVFAAGQRTKGFTDTITQGGKFTVVASVP
                     GNWDRQVAYDAAATILQQNPDLTGFYANNDGMALGVMEAVKAAGLQDKVVVFGTDGIS
                     DAYASIRAGELTGTVDSFPMLTGEVAMETALRLIGKQALPRVVTTPQALITKANVETF
                     AVKGDGLRKVLMSASAN"
     gene            1399..>2378
                     /locus_tag="VE686_12335"
     CDS             1399..>2378
                     /locus_tag="VE686_12335"
                     /EC_number="7.5.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006336794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter ATP-binding protein"
                     /protein_id="HYY85273.1"
                     /translation="MNTPVERLRLSNVSKSFGPVRALDGVTMAVTRGTVHGLLGENGA
                     GKSTLLRILSGLYEPSEGHVEIDGERVAGHGPVAARRAGIAMIHQELQHVAELTVAQN
                     MFLGHPLKRFGGLLVDRAAQERAAAEALRSLDPTIDPAAPIRTLKVAQRQIVEIARAV
                     MEDAKVIAMDEPTSSLTPAEFDRLAVLIDDLAARGVSIIYVSHKMDEVFRVCRTATIL
                     RDGRVVDDVVMAETSEAAVVARMVGRELAHAEHKSFAMSEIVLDVENLSRGTAVRNAS
                     FQLRKGEVLGVSGLVGAGRTELLRLVAGVDRPSAGEIRIQGRPLKTGSPRA"
BASE COUNT          425 a          804 c          793 g          356 t
ORIGIN      
        1 ctctacttcg acaccttccc cgacctcacc ggcctcgatc cggtggccga gtgcgaggtc
       61 aacatcaaaa ccgtgcgacg tcttctggcc gtcgccgaga gcctcgacgg cgacaaccaa
      121 ctcggcgagg cgatggcgcg gcaggatgcc gtcgccagcc agcacatcat caacgcggca
      181 ctcttcggca gcgcctgacg cgagaccgcg aaccggaccg tgggtgagtc cggcactaca
      241 aaccacaaat caatgggagg aaagaatggt cttttccata aagacgctcg cggccgcgtg
      301 cgccctgtcg ctcctggctg gaaccgggtt cgcgcaggag ctgaagcccc tgaactcgga
      361 caccgagacc gaccgcgtcg cctggtccga actgcagacg aaattcggcg atgttccggc
      421 cgcacccgcc ggcacgagta tcggcggcgt ctcgaagacc ctgaccaacg agtactggcg
      481 cactctcggc gagggctacg cggcctatgc caggaaggcg ggcgtcgaga tagcctacca
      541 ggccgcccag agcgagggtg accagctcgg tcagctctcg atcgccgaga acctcatctc
      601 gcagggcttc gacgccctcc tgctctcgcc gcagacggac aacaacctgc agcccgcgct
      661 tgagagcgcc gaggctcaag ggataccggt ggtcaacgtc aacgacgccg tcattccagg
      721 cgcccggcac tatgtcggca acgtccagcg tgacaacggc gtgcgggtgg ccaaatggtt
      781 cctcgagaac cggcccaccg gcggcaaggt cgcggtgatc gagggccagg ccggcgtctt
      841 cgccgccggc cagcgcacga aaggcttcac cgacacgatc acgcaaggcg gcaagttcac
      901 cgtcgtcgcc agcgtccccg gcaactggga ccggcaggtg gcctatgacg cggccgcgac
      961 gatcctccag cagaatcccg acctcaccgg cttctacgcc aacaatgacg gcatggccct
     1021 cggcgtcatg gaagcggtga aggcggcggg ccttcaggac aaggtcgtgg tgttcggcac
     1081 ggacggcatt tccgacgcct acgcctcgat ccgtgccggc gagctgacgg ggacggtgga
     1141 ctccttcccc atgctgacgg gtgaggtcgc gatggaaacg gcactgcgcc tgatcggcaa
     1201 gcaggcactg ccgcgcgttg tcacgacacc gcaggcgctg atcaccaagg ccaatgtcga
     1261 gaccttcgcg gtgaagggcg acgggctgcg caaggtgctg atgtcggctt cggccaactg
     1321 acacgacgct agggcgaaag gggcctcgcc gggaggcggg gcccggtcgc cgacacgacg
     1381 atcgggagga cgtcgatcat gaacacacca gtcgaacgcc tgcgtctatc gaatgtcagc
     1441 aagagcttcg ggccggtccg cgcgcttgac ggcgtcacca tggcggtgac gcggggcacg
     1501 gtgcatgggc tccttggcga gaatggtgct ggcaaatcca cgctgctgcg cattctttcc
     1561 ggcctctacg agccgtccga ggggcatgtc gagatcgacg gtgagcgcgt cgccggtcac
     1621 ggaccggtcg ccgcccgccg cgccggcatc gcgatgatcc accaggaact gcagcacgtc
     1681 gccgaactga cggtcgcgca gaacatgttc ctcgggcacc ccctcaagcg gttcggcggt
     1741 cttctcgtcg atcgcgcggc gcaggagcgg gcggccgccg aggcgctgcg ctcgctcgac
     1801 cctaccatcg atccggccgc gccgatccgc accctcaagg tcgcccagcg ccagatcgtc
     1861 gagatcgccc gcgccgtcat ggaagacgcc aaggtcatcg ccatggacga gccgacgtcc
     1921 agcctgaccc cggccgagtt cgaccggctc gcggtgctga tcgacgacct ggcggcgcgt
     1981 ggtgtctcga tcatctatgt ctcgcacaag atggacgagg tcttccgcgt ctgccgcacc
     2041 gcgacgatcc tgcgcgacgg cagggtggtt gacgatgtcg ttatggccga gacgagcgaa
     2101 gcggcggtag tcgcgcgcat ggtcggccgc gagctggcgc acgccgagca caagagcttt
     2161 gctatgtcgg agatcgttct cgacgtcgag aacctctctc gcggcacggc cgtgcgcaat
     2221 gccagcttcc agctgcgcaa gggcgaggtt ctcggcgtgt ccggtctcgt cggagccggg
     2281 cgcacggagc ttctgaggct cgttgccggt gtcgaccggc cgagcgcagg cgagatccgg
     2341 atccagggca ggcccctgaa gaccggcagc ccgcgggc
//
LOCUS       DASQWN010000658         2246 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_485031, whole genome shotgun sequence.
ACCESSION   DASQWN010000658 DASQWN010000000
VERSION     DASQWN010000658.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2246)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2246)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2246
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_485031"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            255..1460
                     /locus_tag="VE686_12340"
     CDS             255..1460
                     /locus_tag="VE686_12340"
                     /EC_number="2.6.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009210204.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008483 - transaminase activity [Evidence
                     IEA];
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal phosphate-dependent aminotransferase"
                     /protein_id="HYY85274.1"
                     /translation="MVRIAPRLNRIKPSPSSMATQRARELKRQGRDIVALTAGEPDFG
                     TPEHVKEAVARALAAEQTKYTDVGGTPELKSAIRDKFKRENGLDYAQDEIIVSSGGKQ
                     VIFNALMCTVDHGDEVIVPAPYWVSYPDIVSLAGGSPVFVDCPADKGFKLQPEDLERA
                     ITPRTRWLVLNAPNNPSGAVYAREEMRALADVLVRHPDVWLLSDDIYEHVLYDGRAFV
                     TPAQVEPALKARTVTMNGVSKAYAMTGWRIGYAGAPAELVKAMTKLQSQSTGNPSSVG
                     QAAALAALTGPQDFIAERAATFQRRRDVVAEWIDGIPGLSCHVPEGAFYVFPSCEGVL
                     GRSTPDGKRLATSEDLVMHLLEAYDLAAVHGEAYGVPGFFRLSFATSMDQLEEGCRRL
                     ARACAALVA"
     gene            1478..2149
                     /locus_tag="VE686_12345"
     CDS             1478..2149
                     /locus_tag="VE686_12345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006613902.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RraA family protein"
                     /protein_id="HYY85275.1"
                     /translation="MALGFRIVSDVPRAPDALMDRFAQVPAAHLSDAMNRLFAGGSRL
                     RPMHRGAKLIGNALTVRTRPGDNLMVHKAIDIASPRDVIVVDAGGELAQAIIGEIMTT
                     LAMTRGVAGFVIDGAVRDSGAIAAEDFPVYAAGVTHRGPYKDGPGEINVPVSVGGMVV
                     HPGDIIVGDEDGVVAVPLAEAEALLEVCAATRRREDATLSEIRAGSVDRSWVDALLKT
                     RGFAG"
BASE COUNT          352 a          798 c          772 g          324 t
ORIGIN      
        1 gacgaataga cgacgacctt ctgctgcgcg ctggcgccgg tcacgcctgc gagaagcgcc
       61 acgcctacgg cgagcgccgc gatgccccat ctgccctgca tgtcgtcgct ctccccctcg
      121 ggatgccgtc gcgcgtcgcg ctttcgcggc ccattggttt tctgtaggaa cgaacacaat
      181 cgatcggcgg cgcggtgtca acgcaccgcc gggacgaaga ccacgcgccg cttcaagcgc
      241 gtcccgggag gcccatggtc cgcatcgccc cgcggctgaa ccgcatcaag ccgtcgccga
      301 gctcgatggc gacgcaacgc gcgcgcgagc tcaagcgcca gggccgcgac atcgtcgccc
      361 tgacggcggg cgagcccgac ttcggcacgc ccgagcacgt caaggaggcc gtggcccgcg
      421 cgctcgccgc cgagcagacc aagtacaccg acgtcggcgg cacgccggag ctgaagagcg
      481 ccatccgaga caagttcaag cgcgagaacg gcctcgacta cgcgcaggac gagatcatcg
      541 tctcgagcgg cggcaagcag gtcatcttca acgcgctcat gtgcaccgtc gaccacggcg
      601 acgaggtcat cgtgccggcg ccctactggg tgtcgtatcc ggatatcgtg agccttgcgg
      661 gcgggtcgcc ggtgttcgtc gactgtccgg ccgacaaggg cttcaagctg cagcccgagg
      721 acctcgagcg ggcgatcacc ccgcgcacgc gctggctcgt gctcaacgct cccaacaacc
      781 cgagcggcgc ggtgtacgcg cgggaggaga tgagggcgct cgccgacgtc ctggtgcggc
      841 atcccgacgt gtggctcctg tcggacgaca tctacgagca cgtcctctac gacggccgcg
      901 ccttcgtcac gccagcgcaa gtggagccgg cgctcaaggc gcgcaccgtc accatgaacg
      961 gcgtctccaa ggcctacgcc atgacggggt ggcgcatcgg ctacgccggg gcgccggcgg
     1021 agctcgtcaa ggcgatgacg aagctgcagt cgcagagcac cggcaatccc tcgtcggtcg
     1081 gccaggcggc ggcgctcgcg gcactgaccg gaccgcagga tttcattgcc gagcgcgcgg
     1141 cgacgttcca gcgccgccgg gacgtcgtgg ccgagtggat cgacggcatc ccgggcctga
     1201 gctgccacgt gccggaaggc gccttctacg tcttcccgtc gtgcgagggc gtgctcggca
     1261 ggtcgacgcc cgacggcaag cgcctcgcga cgagcgagga cctcgtcatg cacctcctcg
     1321 aggcctacga tcttgctgcg gtgcacggcg aggcctacgg cgtcccgggc ttcttccgcc
     1381 tttcgttcgc gacctcgatg gaccagctcg aagagggctg ccggcggctc gcccgcgcct
     1441 gcgcggcgct cgtggcttag acaacaggag cttttcgatg gccctcggct tccgcatcgt
     1501 gtccgacgtg ccccgcgcgc cggacgccct catggaccgc ttcgcgcagg ttccggcggc
     1561 gcacctgagc gacgccatga accgcctgtt cgctggcggc tcgcgcctgc ggccgatgca
     1621 tcggggcgcg aagctcatcg gcaacgcgct cacggtgcgg acccggccgg gcgacaacct
     1681 catggtccac aaggcgatcg atatcgcgag tccccgggat gtgatcgtcg tcgacgccgg
     1741 cggcgagctt gcgcaggcga tcatcggcga gatcatgacc acgctcgcca tgacgcgcgg
     1801 cgtcgcgggc ttcgtcatcg acggggccgt gcgcgactcg ggcgccatcg cggcggagga
     1861 tttccccgtc tacgccgccg gcgtcaccca tcgcgggccg tacaaggacg ggcccggcga
     1921 gatcaacgtg ccggtctcgg tcggcggcat ggtggtccac cccggcgaca tcatcgtcgg
     1981 tgacgaggat ggcgtcgtcg cggtgccgct cgccgaggcg gaggcgctgc tcgaggtctg
     2041 cgccgccacg cgccggcgcg aggacgccac cttgagcgag atccgcgccg gcagcgtcga
     2101 ccgctcctgg gtcgacgcgc tgctcaagac ccggggcttc gcgggatagc ttagccacag
     2161 caaaagagcc ggcgcggcag gttcgtgaaa acgccgcatt gtcgggcaat ggcaaatcgc
     2221 gctatccgaa tcgccaagaa caaggc
//
LOCUS       DASQWN010000659         3735 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_485433, whole genome shotgun sequence.
ACCESSION   DASQWN010000659 DASQWN010000000
VERSION     DASQWN010000659.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 3735)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3735)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3735
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_485433"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(92..610)
                     /gene="paaD"
                     /locus_tag="VE686_12350"
     CDS             complement(92..610)
                     /gene="paaD"
                     /locus_tag="VE686_12350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018315590.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0010124 - phenylacetate catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="1,2-phenylacetyl-CoA epoxidase subunit PaaD"
                     /protein_id="HYY85276.1"
                     /translation="MVSVAADLAREDETLRRRAWDAAAEVCDPEIPVLTIADLGVLRS
                     VEIAEDGAVEVAITPTYSGCPAMDVIGVDVELALLKAGLDKVRIRHVLSPAWTTDWMS
                     EEGRAKLRAYGIAPPAATSSRRALFGEDGVACPRCRAERTQKISEFGSTACKSLWRCL
                     ACREPFDHFKCI"
     gene            complement(604..1383)
                     /gene="paaC"
                     /locus_tag="VE686_12355"
     CDS             complement(604..1383)
                     /gene="paaC"
                     /locus_tag="VE686_12355"
                     /EC_number="1.14.13.149"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011502246.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0010124 - phenylacetate catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="1,2-phenylacetyl-CoA epoxidase subunit PaaC"
                     /protein_id="HYY85277.1"
                     /translation="MAATTSIALTETPLITYVLRRADDALVLGHRLSEWCGHAPVLEE
                     ELALANIALDLIGQARSLYDYAARIDGRGLTEDHFAYLRDVNRYRNCLLVEQPNGDFA
                     TTIVRQVVFSAFMDPYWRAMTASRDETLAAIAAKAEKESVYHLRHAAEWLIRLGDGTA
                     ESHRRAQAALDELWPYSGELFEVDGAERALIEAGVAIDPAALRDAWNTTFDAVLAQAT
                     LARPAEGWMQTGGRSGRHSEHLGTILTELQYLQRTYPGATW"
     gene            complement(1391..1678)
                     /gene="paaB"
                     /locus_tag="VE686_12360"
     CDS             complement(1391..1678)
                     /gene="paaB"
                     /locus_tag="VE686_12360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006613353.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0010124 - phenylacetate catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="1,2-phenylacetyl-CoA epoxidase subunit PaaB"
                     /protein_id="HYY85278.1"
                     /translation="MSEPKLPLWEVFIRSRTGLAHKHAGSLHAADATMALQNARDVYT
                     RRGEGTSLWVVPSSAIVASDPGDKDVLFEPTASKIYRHPTFYEVPDEVGHM"
     gene            complement(1678..2682)
                     /gene="paaA"
                     /locus_tag="VE686_12365"
     CDS             complement(1678..2682)
                     /gene="paaA"
                     /locus_tag="VE686_12365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011159306.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0010124 - phenylacetate catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="1,2-phenylacetyl-CoA epoxidase subunit PaaA"
                     /protein_id="HYY85279.1"
                     /translation="MYTQALNAKDDAPRTAGIEEPEKGARFQARVDAEDKVEPNDWMP
                     EAYRRTLVRQISQHAHSEIVGMLPEGNWITRAPSLKRKAALLAKVQDEGGHGLYLYAA
                     AETLGVSREELIDQLLTAKAKYSSIFNYPTLTWADIGAIGWLVDGAAIMNQIPLCRCS
                     FGPYARAMIRICKEESFHQRQGYEIMLTLSRGTPEQKAMAQDALDRWWWPCLMMFGPP
                     DSQSQHSDQSTRWKIKRFSNDELRQKFVDATVPQGHFLGLTFPDPELKLNEATGHWEF
                     GEIDWEEFRQVVAGNGPCNRQRLQQRRKAHEEGAWVREAAVAFAEKRARRVDARQEAA
                     "
     gene            complement(2714..3628)
                     /locus_tag="VE686_12370"
     CDS             complement(2714..3628)
                     /locus_tag="VE686_12370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015933503.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PaaX family transcriptional regulator C-terminal
                     domain-containing protein"
                     /protein_id="HYY85280.1"
                     /translation="MPLSPPLLDALHARTPIRAGSLIVTTFGDAVAPRGGELSLASLV
                     EIMAAFRIGPGVVRTALSRLVAEGWFDRRRLGRSSFYRLSGTGRAAFEAATEKIYGGT
                     HHRWDGAFAMVLLEQNGGRGQARAHLEGLGFGAISPDLLIAPTDLADVRVEAGVRLEA
                     RPVEPEAARRLAERAWPLAALAERYRGFVRLFAPARQSLEAAAPADLDALVVRVLLIH
                     EYRRIVLRDPLLPRELLPERWAGDDARRLCGTIYRALVPPAERWLDAHATTESGPLPP
                     PARGFLERFGDLQSVQNVTKKLDVARLP"
BASE COUNT          537 a         1263 c         1372 g          563 t
ORIGIN      
        1 ctcaggcggg accgcgaagg cgatcgacac cgcgtccggg gtctcgcgcc gtacgtcggc
       61 gatgcgcagg gggtggaagc gggtcatggc atcagatgca cttgaagtgg tcgaagggct
      121 cgcggcaggc gaggcagcgc cagagcgact tgcaggcggt cgagccgaac tcggagatct
      181 tctgcgtccg ctccgcgcgg cagcgcgggc aggcgacgcc gtcctctccg aacagcgcgc
      241 ggcgggagga tgtcgccgcg ggcggggcga tgccgtaggc gcggagcttc gccctgccct
      301 cctcgctcat ccagtccgtc gtccaggcgg gcgagagcac gtggcggatg cggaccttgt
      361 cgaggccggc cttcaagagc gcgagctcga cgtcgacgcc gatgacgtcc atggccgggc
      421 agcccgagta cgtcggcgtg atcgcgacct cgacggcgcc gtcctcggcg atctccacgc
      481 tgcgcaggac gccaaggtcg gcgatggtga gcaccgggat ctcggggtcg cagacctccg
      541 cggccgcgtc ccacgcgcgc cggcgcagcg tctcgtcctc ccgcgcgagg tctgctgcga
      601 cgctcaccag gtcgcccccg ggtaggtgcg ctggaggtac tgcagctcgg tcagaatggt
      661 gccgaggtgc tcggagtggc ggccggagcg gccgccggtc tgcatccagc cctcggccgg
      721 gcgggcaagc gtcgcctggg ccagcacggc atcgaaggtg gtgttccagg cgtcgcgcag
      781 agccgcggga tcgatcgcca cgccagcctc gatgagcgcg cgctcggcgc cgtccacctc
      841 gaacagctcg cccgagtacg gccacagctc gtcgagcgcc gcctgcgccc ggcggtggct
      901 ctcggccgtt ccgtcgccga ggcggatgag ccattcggcc gcgtgccgca ggtgatagac
      961 gctctccttc tcggccttcg cggcaatggc ggcgagggtt tcgtcgcggg aggccgtcat
     1021 ggcgcgccag tacgggtcca tgaaggccga gaagaccacc tggcgcacga tggtggtcgc
     1081 gaagtcgccg ttcggctgct cgacgaggag gcagttgcgg tagcggttca cgtcgcgcag
     1141 gtaggcgaaa tggtcctcgg tcagcccgcg cccgtcgatg cgggcggcgt agtcgtagag
     1201 cgagcgggcc tggccgatga ggtcgagggc gatgttggcg agcgccagct cctcctcgag
     1261 caccggcgcg tggccgcacc actccgatag gcggtgcccg agcacgagcg catcgtcggc
     1321 ccgccgcagc acgtaggtga tgagcggcgt ctccgtgagg gcgatggagg tggtggccgc
     1381 cattgtcgag ctacatgtgc ccgacttcgt cggggacctc gtagaaggtc gggtggcggt
     1441 agatcttcga ggcggtcggc tcgaacagga cgtccttgtc gccggggtcg gaggcgacga
     1501 tggccgacga cggcaccacc cagagcgacg tgccctcgcc acgccgcgtg tagacgtcgc
     1561 gcgcgttctg cagcgccatg gtggcgtcag cggcgtgcag cgagcccgcg tgcttgtgcg
     1621 cgagccccgt ccgcgagcgg atgaagacct cccagagcgg cagcttcggt tcggacatca
     1681 ggcagcctcc tgccgcgcgt cgacccgccg cgcgcgcttc tccgcgaacg ctacggccgc
     1741 ctcgcggacc caggcgccct cctcgtgcgc cttgcgacgc tgctgcaggc gctggcgatt
     1801 gcaggggccg ttgccggcga cgacctggcg gaactcctcc cagtcgatct cgccgaactc
     1861 ccagtggccc gtcgcctcgt tgagcttgag ctccgggtcc gggaacgtca ggccgaggaa
     1921 gtggccctgc ggcacggtcg cgtcgacgaa tttctggcgc agctcgtcat tcgagaagcg
     1981 cttgatcttc cagcgcgtcg actggtccga gtgctggctt tggctgtcgg gcggcccgaa
     2041 catcatcagg cacggccacc accagcgatc gagcgcatcc tgcgccatcg ccttctgctc
     2101 cggcgtgccg cgcgacagcg tgagcatgat ctcgtagccc tggcgctgat ggaaactctc
     2161 ctccttgcag atgcggatca tcgcccgcgc gtacgggccg aaggagcagc ggcagagcgg
     2221 gatctggttc atgatcgccg cgccgtcgac gagccagccg atggcgccaa tgtcggccca
     2281 ggtcagcgtc gggtagttga agatcgacga gtacttggcc ttagccgtga gtagctggtc
     2341 gatgagctcc tcccgcgaga cgccgagggt ctcggcggca gcgtagaggt agagcccgtg
     2401 gccgccttcg tcctgcacct tggcgagcag cgccgccttg cgcttgagcg agggcgcgcg
     2461 ggtgatccag ttgccctccg gcagcatgcc gacgatctcg gaatgggcgt gctgcgagat
     2521 ctgccgcacg agggtgcgcc ggtaggcctc cggcatccag tcgttcggct cgaccttgtc
     2581 ctcggcgtcg acccgcgcct ggaagcgggc gcccttctcc ggctcctcga tcccggccgt
     2641 ccgcggcgcg tcgtccttgg cgttgagcgc ttgcgtgtac atggccggca gcctcgctga
     2701 tcggcgtaat ttgttacgga agacgagcta cgtcaagttt tttcgtaaca ttctgcacgg
     2761 actggagatc gccgaagcgc tcgaggaagc ctctggcggg gggcggcaga ggcccgctct
     2821 cggtggtggc gtgggcgtcg agccagcgct cggccggcgg cacaagggcg cgatagatcg
     2881 tgccgcacag acgccgggcg tcatcccctg cccagcgctc cggcaggagt tcgcgcggca
     2941 gcagcggatc gcgcagcacg atgcggcggt actcgtggat caaaagaacg cgcactacga
     3001 gggcgtcgag gtccgcaggc gcagccgcct ccaagctttg gcgagccggt gcaaagaggc
     3061 gcacgaagcc gcggtagcgc tcggcgagtg cggcgagcgg ccaggcccgt tcggcgagac
     3121 gccgcgccgc ctcgggctcg accggccgtg cctccagccg aacgccggct tccacgcgga
     3181 cgtcggcgag gtctgtcggt gcaatgagga ggtcggggct gatggccccg aagccgagcc
     3241 cctccaagtg ggcccgcgcc tgccctcgtc cgccgttctg ctcgaggagc accatggcaa
     3301 aggcgccgtc ccagcggtgg tgcgtgccgc cgtagatctt ctccgtggcg gcctcgaagg
     3361 cggcccggcc ggtgcccgag agacggtaga agctgctgcg gccgagccgg cggcggtcga
     3421 accagccctc ggcgacgagc cgcgacaggg ccgtgcggac gactcctggc ccgatacgga
     3481 acgccgccat gatctcgacg agggaggcca gtgacagctc ccctccgcgc ggcgcgacgg
     3541 cgtcgccgaa ggtcgtgacg atcagcgacc ctgcccggat cggcgtgcgg gcgtgcaagg
     3601 cgtcgagcag gggcgggcta agcggcatcg cccctgtgta gcgcaaagcg cagcgtgcag
     3661 gccaagcccg gccgcccccg cgccgccggt ttccctcggg cgaaccgaga tcgtgacgtc
     3721 cgaggcagag gcact
//
LOCUS       DASQWN010000660         4409 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_366018, whole genome shotgun sequence.
ACCESSION   DASQWN010000660 DASQWN010000000
VERSION     DASQWN010000660.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 4409)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4409)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4409
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_366018"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..471)
                     /locus_tag="VE686_12375"
     CDS             complement(<1..471)
                     /locus_tag="VE686_12375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007593991.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alcohol dehydrogenase catalytic
                     domain-containing protein"
                     /protein_id="HYY85281.1"
                     /translation="MKSYQVAEFGAPLQLAEREAPQPEGTQVRLRVRAAGVCHSDLHI
                     WEGGYDLGHGKRLSLQARGIALPLTMGHETVGEVVAVGPEAEGVRVGDVRLAYPWIGC
                     GKCEVCRAGDENLCMQPRFLGIHCDGGYADEILVPHPRYLIDVYGLDPAQAAPYA"
     gene            complement(537..1334)
                     /locus_tag="VE686_12380"
     CDS             complement(537..1334)
                     /locus_tag="VE686_12380"
                     /EC_number="2.1.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015931163.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HYY85282.1"
                     /translation="MSGFDPAWLSLREPVDHRSRNAALLEAVAARFAGRDVIAVVDLG
                     CGTGSNLRALAPRLQGRQRWTLVDHDPALLSAAKAGISAEVAARQIEVAFVQADLSTD
                     LDPVLGDGPDLVTAAALFDLVSAAFIDRFAAAVTERRAAFYTVLSYDGTERWEPPHRA
                     DAAIHGAFLRHQTRDKGFGPAAGPAATQAPVSAFLGRGYRVATGDSPWVLGPQDAALM
                     AANASGIAQAARETGEVDGGDVDAWLAARRTATACIIGHQDLLAVPA"
     gene            complement(1331..2374)
                     /locus_tag="VE686_12385"
     CDS             complement(1331..2374)
                     /locus_tag="VE686_12385"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018259558.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 4 protein"
                     /protein_id="HYY85283.1"
                     /translation="MLEAAFAVPGDLSASTGGYAYARKLLALAPEVDVTLHHGPLPAG
                     FPHPSPADLTETAARLRDARGAVLLVDGLAYGAFTSDLVETLDRPIVALVHHPLAFET
                     GLDPARRDALAVSERGALARARAVVASSRETARILAADYGVPSSRITVAEPGTDPAPR
                     SSGTGNPVQLVAVGTVSPRKAFDILVAALAGLADLPWRLTIAGAVDRDPTAAAALVTA
                     IDAAGLRERVSLVGVLGESELSDLYAAADVLVSPSLYEGYGMALAEALARGLPVVAST
                     GGAAAQTVPDAAGLKVPPGDVGALRDALARMIADPALRRRCADAAWAAGQSLPRWRDT
                     ASTIAAVLREAAR"
     gene            complement(2367..2771)
                     /locus_tag="VE686_12390"
     CDS             complement(2367..2771)
                     /locus_tag="VE686_12390"
                     /EC_number="4.1.2.50"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020187349.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0070497 -
                     6-carboxy-5,6,7,8-tetrahydropterin synthase activity
                     [Evidence IEA];
                     GO_process: GO:0008616 - queuosine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="6-carboxytetrahydropterin synthase"
                     /protein_id="HYY85284.1"
                     /translation="MYAVEVRDHIMIAHSFKGPLFGPAQGVHGATFVVDVAFFREELT
                     SDGVVVDIGRAHDALKATLEPLNYRNLDELPQFAGKNTTTEFLSRHVFDAMAGAARSG
                     ALGPGGEGVARIRVTLHESHVARAWFEGAVGA"
     gene            complement(2780..3769)
                     /locus_tag="VE686_12395"
     CDS             complement(2780..3769)
                     /locus_tag="VE686_12395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012114336.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc-binding alcohol dehydrogenase"
                     /protein_id="HYY85285.1"
                     /translation="MNKAESASPSRALWYVTRGRAELREDVLPALNEGDARVRSLFGA
                     LSRGTERLVFEGRVSMMEGERMRAPLQEGDFPYPVKYGYCTVGRVEAGPDELRGRTVF
                     ALHPHQDVFVAPAAMLCPVPDAVPPRRAVLAANMETALNALWDSGAGPGDRIVVVGAG
                     VVGALTAYLAAGLPGAEVTLVDVDLGRADLAASLGCRFRKPLDAPGDADVVFHASATA
                     AGLGCALSCAAMEATVVEMSWYGDAPVSAPLGLDFHSRRLRLVSSQVGQVSPSRRPRW
                     DFRRRLEKALTLVSDERLDALLTEEVAFADLPAALPRLLAAGAPGLATVIRYA"
     gene            3824..>4409
                     /locus_tag="VE686_12400"
     CDS             3824..>4409
                     /locus_tag="VE686_12400"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="glucans biosynthesis glucosyltransferase MdoH"
                     /protein_id="HYY85286.1"
                     /translation="MNEPAQLAASGVIEVLGTTPTGLQSERTLSRRRLVMLGLSGATY
                     LALAAVMAEIADAGGWTVVDVILFLCFLVATPWTVLGFWNALVGIYLLHGRKDGLSQA
                     APFAAAAASHDPVRLKTAVLMTVRNEEPARAIRRLRIVQEGLDATGEGKRFAYFVLSD
                     TSEPDVAAAEEAAVAAWKAEIEDPDRIVYRRREHN"
BASE COUNT          654 a         1578 c         1616 g          561 t
ORIGIN      
        1 ggcgtaaggc gccgcctgcg ccggatcgag cccgtagacg tcgatgaggt agcgcgggtg
       61 cggcaccagg atctcatcgg catagccgcc gtcgcagtgg atgccgagga agcgcggctg
      121 catgcacagg ttctcgtcgc cggcgcggca gacctcgcac ttgccgcagc cgatccaggg
      181 ataggcgagc ctgacgtcgc cgacgcggac gccctcggcc tcgggcccga ccgccaccac
      241 ctcgccgacg gtctcgtgtc ccatggtgag cggcagggcg atgccgcgcg cctgcagcga
      301 caggcgcttg ccgtggccaa gatcgtagcc gccctcccag atgtggaggt cgctgtggca
      361 gaccccggcg gcgcggacgc gcaggcgcac ctgcgtgcct tccggctggg gcgcctcgcg
      421 ctcggcgagc tgaagcggcg ctccgaattc tgcgacctga tagcttttca tgggcgtgtt
      481 cctcgacagg ctttgggcga gaccctagcg cgtttttcag cgcagcgcgc caggctctaa
      541 gcagggacgg cgaggaggtc ctggtggccg atgatgcagg ccgtggcggt ccgtcgcgcc
      601 gcgagccagg cgtcgacatc gccgccatcg acctcgccgg tctcgcgtgc cgcttgcgcg
      661 atgccggaag cgttggcggc catcagcgcc gcatcctgcg gcccgagaac ccagggactg
      721 tcgccggtcg ccacgcggta accgcggccg aggaaggcag agaccggagc ctgtgtggca
      781 gcggggcccg ccgcgggccc gaaccccttg tcgcgggtct gatggcgcag gaaggcgcca
      841 tgtatcgccg cgtcggcccg atgcggcggc tcccagcgct ccgtgccgtc gtagctgagg
      901 accgtgtaga acgccgcgcg gcgctcggtg acggccgccg cgaatcggtc gatgaacgcg
      961 gccgagacga gatcgaagag ggcggccgcg gtgacgagat ccgggccgtc gccgaggacc
     1021 gggtcgaggt cggtggagag gtcggcctga acgaaggcga cctcgatctg gcgagcggcg
     1081 acctcggccg atatgcctgc cttcgcggcc gagagcagcg ccgggtcgtg gtcgacgagc
     1141 gtccagcgct gcctgccctg gaggcgcggc gcgagcgccc gcaggttcga gccggtgccg
     1201 cagccgagat cgacgacggc gatcacgtcg cgcccggcga agcgcgccgc cacggcctcg
     1261 aggagcgccg cgttgcggga gcggtggtcg accggctcac gcaacgacag ccaggcggga
     1321 tcgaagccgc tcaccgggcc gcctcccgca gcacggcggc gattgtcgag gccgtgtcgc
     1381 gccagcgcgg cagcgactgc cctgccgccc aggctgcgtc ggcgcagcgc ctgcgaaggg
     1441 cgggatcggc gatcatgcgg gcgagcgcgt cgcgcaaggc accgacatcg ccgggcggca
     1501 ccttgaggcc ggccgcgtcg ggcaccgtct gcgccgccgc gccgcccgtc gaggcgacga
     1561 cgggcaggcc acgcgcgagc gcttcggcaa gcgccatccc gtagccctcg tagagcgacg
     1621 gcgacacgag cacgtccgct gccgcgtaga ggtccgacag ctcgctctcg ccgagcacgc
     1681 ccacgaggct gacccgctcg cgcagcccgg ccgcgtcgat cgccgtgacg agggccgcag
     1741 ccgcggtcgg gtcgcgatcg actgcgcccg cgatggtgag acgccacggc agatccgcca
     1801 agcccgcaag cgccgcgacg aggatgtcga aggccttgcg cggcgacacc gttccgacgg
     1861 cgacaagctg caccgggttg ccggtcccgc tcgagcgcgg cgccggatcg gtgcccggtt
     1921 cggcgaccgt gatcctggat gacggaacgc cataatcggc cgcgaggatg cgcgccgtct
     1981 cgcggctcga ggcgaccacg gcccgggcac gcgcgagggc cccgcgttcc gacaccgcaa
     2041 gggcgtcccg ccgcgccggg tcgagaccgg tctcgaaggc gagcgggtgg tggacgaggg
     2101 cgacgatggg gcggtcgagc gtctccacca aatcggacgt gaaggcgccg taggcgaggc
     2161 cgtcgacgag cagcactgcg ccgcgggcgt cgcgcaggcg tgcggcggtc tcggtcaggt
     2221 cggcaggcga cggatgcgga aacccggccg gaagcggccc gtgatgcagc gtcacatcga
     2281 cctcgggcgc aagcgccagg agcttgcgcg cgtaggcata ccctccggtc gatgccgaga
     2341 ggtcgcccgg caccgcgaac gcggcctcaa gcaccgacgg caccttcaaa ccacgctcgg
     2401 gccacgtgag actcgtgcag ggtgacgcga atcctggcga cgccctcgcc gccgggcccg
     2461 agcgcgccgc tgcgtgccgc gccggccatg gcgtcgaaga cgtggcggct caggaactcg
     2521 gtcgtggtgt tcttcccggc gaactgcggc agctcgtcga gattgcgata gttgagcggc
     2581 tcgagcgtcg ccttgagggc atcgtgggcg cggccgatgt cgaccaccac gccgtcgctc
     2641 gtcagctcct cgcggaagaa cgccacgtcc accacgaagg tggccccgtg cacgccctgg
     2701 gcggggccga agagggggcc tttgaagctg tgggcgatca tgatgtgatc gcgaacctcg
     2761 acggcgtaca tttcgatcct caggcgtagc ggatgacggt ggcgaggccc ggcgcgccgg
     2821 cggcgaggag gcgcggcagg gcggcgggaa ggtctgcgaa ggccacctcc tcggtgagga
     2881 gcgcatcgag gcgctcgtcg gacacaaggg tcagcgcctt ctcgaggcgg cggcgaaaat
     2941 cccagcgcgg gcggcgcgac ggcgacacct gcccgacctg gctcgacacg agccgcaggc
     3001 gccggctgtg gaagtcgagc ccgaggggcg ccgacacggg cgcgtcgccg taccagctca
     3061 tctcgacaac ggtcgcctcc atggcggcgc acgaaagggc gcagccgagg ccggcggccg
     3121 tggcgctcgc atggaagacc acgtcggcat cgcccggcgc gtcgaggggc ttgcggaacc
     3181 ggcagccgag cgaggcggcg aggtccgccc gcccgagatc gacatcgacc agggtcacct
     3241 ccgccccggg aaggccagcc gccaggtagg cagtgagcgc gcccaccaca ccggccccga
     3301 cgacaacgat gcggtcgccc ggcccggctc cggaatccca cagcgcgttc agcgccgtct
     3361 ccatgttggc ggcaagcacc gcccgccgcg gcggcacggc atccggcacc gggcacagca
     3421 tggcggccgg ggccacgaac acgtcctggt gcggatgcag cgcgaacacg gtccgtccgc
     3481 gaagctcgtc cgggccggcc tcgacgcggc cgacggtgca gtacccgtac ttcaccgggt
     3541 acgggaaatc gccctcctgc aggggcgcgc gcatgcgctc cccctccatc atcgacaccc
     3601 ggccctcgaa gacgaggcgc tcggtgccgc ggctcagcgc gccgaacagg ctgcgcaccc
     3661 gggcgtcacc ctcgttgagc gccggaagca cgtcttcccg aagctccgcc cgcccgcgcg
     3721 tcacgtacca gagcgcccgg gaagggcttg cggattcagc cttgttcatc gaaacgtcag
     3781 cttcggtccg cttcactgtg ccgtcccgtc gctaggtccc cgcatgaacg agcctgccca
     3841 actcgccgcc tccggcgtga tcgaggtcct cgggaccacg ccgaccggcc tgcagagcga
     3901 gcggacgctc tcgcggcgcc ggctcgtcat gctcgggctt tccggcgcta cgtacctcgc
     3961 gctcgccgcc gtgatggcgg agatcgcgga cgcgggcggc tggaccgtcg tcgacgtcat
     4021 cctgttcctg tgcttcctcg tcgcgacgcc ctggaccgtg ctcgggttct ggaacgccct
     4081 cgtcggcatc tacctgctgc atgggcgaaa ggacggcctt tcgcaagccg cgcccttcgc
     4141 cgccgcggcg gcttcgcacg accccgtccg gctgaagacc gccgtcctca tgaccgtgcg
     4201 caacgaggag ccggcccggg cgatccggcg cctgcgcatc gtgcaggagg gtctcgacgc
     4261 cacgggtgag ggcaaacgct tcgcctactt cgttctcagc gacacctccg agcccgatgt
     4321 cgccgcggcc gaggaggcgg ccgtcgcggc gtggaaggcg gagattgagg atcccgaccg
     4381 catcgtgtac cgccgccgcg agcacaaca
//
LOCUS       DASQWN010000661         6102 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_366127, whole genome shotgun sequence.
ACCESSION   DASQWN010000661 DASQWN010000000
VERSION     DASQWN010000661.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 6102)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6102)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6102
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_366127"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..602
                     /locus_tag="VE686_12405"
     CDS             <1..602
                     /locus_tag="VE686_12405"
                     /EC_number="3.2.2.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018042386.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004844 - uracil DNA N-glycosylase
                     activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="uracil-DNA glycosylase"
                     /protein_id="HYY85287.1"
                     /translation="AALAARELARGAATLQDLEAIVAAFEGCALKVSAKSLAFADGNP
                     NGRVMLVGEAPGGEEDRVGKPFVGRAGQLLDRMLGSIGLDRSQVYIANIVPWRPPGNR
                     TPTPQEIAICLPFITRQIELAAPDVLVCLGGPSTQTLLGVKDGILRTRGRWFSYQAGA
                     REIRALACLHPAYLLRQPLQKRLAWRDLLALKRVLDGRE"
     gene            complement(627..2003)
                     /locus_tag="VE686_12410"
     CDS             complement(627..2003)
                     /locus_tag="VE686_12410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006021792.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta fold hydrolase"
                     /protein_id="HYY85288.1"
                     /translation="MPTRRLAAILAADIAGFSGLMERDEEGTHARVRAFRKEVIEVVL
                     GEHAGRLVKTMGDGFLAEFASPVEAVRAAIAIQERTAEREAANAEPLRLRVGINLGDI
                     IVEEDGDVYGDGVNIAARLEQIAEPGGILLSGALHDVVDGKVARSIESRGERQLKNMA
                     RPLRVFAIGSGPSQAPADAPELKQEIRFCRAPDGVRLAWAKSGHGPPLVKSANWLNHL
                     QFDWESPIWRHFLVALGRTSTLYRYDARGNGLSDWEVGEVSLDAFVRDLETVVDAAGL
                     ERFPLLGISQGCAVSIAYAVRHPKRVSHLILFGGFAEGWKKYSGPLRERMEAMTALAR
                     LGWNSKNPTFRQMFASQLLPDGTKEQLEVNDEHQRNTTTGECAARYLEAVGAFDVTDL
                     LERVAAPTLVMHVRDDMIVSSKLGRHLAQGIPGAQFISLPGRNHVLLETDVATEQFFE
                     EIRLFLGR"
     gene            2243..3043
                     /locus_tag="VE686_12415"
     CDS             2243..3043
                     /locus_tag="VE686_12415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009763475.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1194 domain-containing protein"
                     /protein_id="HYY85289.1"
                     /translation="MALRRVLAALLFAAATLAAPPLRAQGETEVDLALVLAVDVSRSM
                     DVDEQRLQRDGFIEAFQSPAVHEAIRKGSLGRIAVVYVEWSGALEQKVVVPWTIIDGP
                     GTSAAFSERLAQTPIGLLLSTSISGAIDFGARLFGQSGVDAMRRVIDISGDGPNNTGR
                     TVTLARDDAVAQGIVINGLPIMMKRPTGFGDIENLDWYYRDCVIGGAGSFIVPVRERS
                     HFAEAIKTKLVREIADAGESEPLVKRAQERERMNCLIGEMQRRQRWEP"
     gene            3126..3905
                     /locus_tag="VE686_12420"
     CDS             3126..3905
                     /locus_tag="VE686_12420"
                     /inference="COORDINATES: protein motif:HMM:NF013706.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="fumarylacetoacetate hydrolase family protein"
                     /protein_id="HYY85290.1"
                     /translation="MATDRDPQASSPFDPREAAAGLVEAHRTRRLLDTRGRAPGGVEE
                     AYAVQEAVARELGPVAGWKVGAKSPDDTPLAAPLFASLIQPSPATWPSDAFHMIGIEA
                     EIAFRIGKPVEPRPAPLHRDEVFAHVASVHTAIEIVDTRLQDWSKADRMWALADNQTN
                     GAFAYDPVGVPWRDTDYTNAQVRLEVNGKVRLEQAGGNSGGDPRALFVWLVNHCAMRR
                     GGLAAGTIVTTGSYTGMIFIEPKAEVRASFAGLGTCEVRFT"
     gene            complement(3913..4983)
                     /locus_tag="VE686_12425"
     CDS             complement(3913..4983)
                     /locus_tag="VE686_12425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009762501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016829 - lyase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrodipicolinate synthase family protein"
                     /protein_id="HYY85291.1"
                     /translation="MAANALHHADLPAPVLGELRKGTVIPAHPLALGPDRQFDRTSQR
                     ALTRYYIDAGSGGLAVGVHSTQFAIRDVGLYRPVLELAAETAAAWTDRPLVLIAGAIG
                     RTAQAVEEARTARALGYHAVLLSLAAMRGASEEELVEHCRAVAVEMPLIGFYLQPAVG
                     GISLSRAFWARFAEVENVVAIKVAPFNRYATLDVAFGVVAAGAEERVTLYTGNDDHIV
                     SDLVTPFEVRTPQRRATVRFRGGLLGHWSVWTKSAVALLERLKAAIAAGPIPPEILAL
                     DGIVTDCNSVVFDVAHNFAGCIPGCHEILRRQGLMTSIHCLDPHETLSPGQAEEIDRL
                     YATYPEWQDDAFVRDNLARWRA"
     gene            complement(4995..5861)
                     /locus_tag="VE686_12430"
     CDS             complement(4995..5861)
                     /locus_tag="VE686_12430"
                     /inference="COORDINATES: protein motif:HMM:NF037026.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY85292.1"
                     /translation="MGATEAAMVTQPLVRPMQPADADAALALSQEAGWNQTADDWRFM
                     LGEGRALGVYEPGRGWVASSLVVPLGPGLSWISMVLVARDRRRRGLGTMLLERGVATV
                     QAAKAVPGLDATELGRPVYLPLGFEDRYPISRWVLDAPLPPAEAPECTIRELTAADMR
                     TIAAFDETRSRMHRGHVLAYLRDRAPALVAERGGRIVGYAMGRPGRTAAQVGPVVAET
                     PEIARALVARMAEGSGRTLIDVPDAHAGLAGWLAQHGATRERGYTRMTLGRFPGLDEP
                     GKVYALAGPELG"
     gene            complement(5848..>6102)
                     /locus_tag="VE686_12435"
     CDS             complement(5848..>6102)
                     /locus_tag="VE686_12435"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="epimerase"
                     /protein_id="HYY85293.1"
                     /translation="VTGPETISIRELAQTFGALFGRTPRIVGSESPTGWLNNASVMNA
                     ELGYPRVPLLAMIEWTADWLTRAMPTLDKPTHYEVRDGRY"
BASE COUNT          884 a         2162 c         2169 g          887 t
ORIGIN      
        1 aggcggcgct cgctgcgcgc gagctcgccc gcggcgccgc gaccctccag gacctcgagg
       61 cgatcgtcgc tgcgttcgag ggctgcgcgc tcaaggtcag cgccaagtcg ctcgccttcg
      121 cggacggcaa cccgaacggc cgcgtcatgc tcgtcggcga ggctccggga ggggaggagg
      181 accgcgtcgg caagccgttc gtcggccggg ccggacagct cctcgaccgc atgctcggct
      241 cgatcggcct cgaccgatcg caggtctaca tcgccaacat cgtgccgtgg cgccccccgg
      301 gaaaccgcac gccgacgccg caggagatcg ccatttgcct gccgttcatc acacgccaga
      361 tcgagctcgc cgcgccggac gtgctcgtgt gcctcggcgg cccctcgacc cagacgctcc
      421 taggcgtcaa ggacggcatc ctgcgcacgc gcggccgctg gttctcgtat caggccggcg
      481 cgcgcgagat tcgcgcgctc gcctgcctcc accccgccta cctgctgcgc cagccgctgc
      541 aaaagcgcct tgcctggcgc gacctcctcg ccctcaagcg cgtcctcgac gggcgggagt
      601 agcctcttca cgaagaggat agttcgctac cttccgagga agagccggat ttcttcgaag
      661 aactgctccg tggccacgtc ggtctcgagc agcacgtggt tgcggccggg cagcgagatg
      721 aactgggcgc ccggtattcc ctgcgcgagg tgccgcccga gcttgctcga cacgatcatg
      781 tcgtctcgca cgtgcatgac gagggtcggc gccgcgaccc gctcgagcag atcggtgacg
      841 tcgaaggcgc cgaccgcctc gaggtagcgg gccgcgcatt cgccggtggt cgtgttgcgc
      901 tggtgctcgt cgttgacctc gagctgctcc ttggtgccgt ccgggaggag ctgtgacgcg
      961 aacatctgcc ggaaggtcgg gttcttggag ttccagccga gccgggcgag cgccgtcatg
     1021 gcctccatcc gctccctcaa gggaccggag tacttcttcc agccttcggc gaagccgccg
     1081 aacaggatga ggtgtgacac gcgcttcggg tgccgcacgg cgtaggcgat ggagaccgcg
     1141 cacccctggg agatgcccag cagcggaaag cgctcgagcc ccgcggcgtc gacgacggtt
     1201 tcgaggtcgc gcacgaatgc gtcgagggag acctcgccca cctcccagtc cgagaggccg
     1261 ttgccccggg cgtcgtagcg gtagagcgtg ctcgtccgcc ccagggcgac gaggaaatgg
     1321 cgccagatcg ggctctccca gtcgaactgc aggtggttga gccagttcgc cgacttcacg
     1381 agcggcggtc cgtggccgct cttggcccac gcaagccgga cgccatcggg tgcccggcag
     1441 aacctgatct cctgcttcaa ctcgggggcg tccgcgggag cttggctcgg gcccgagccg
     1501 atggcgaaga cgcgaagcgg acgtgccatg ttcttcagct ggcgctcgcc gcggctctcg
     1561 atgcttcggg cgaccttgcc gtccacgaca tcgtgcaggg cgccggacag caagatgccg
     1621 ccgggctccg cgatctgttc caggcgcgcg gcgatgttga ccccgtcgcc atacacgtcg
     1681 ccgtcctcct cgacgatgat gtcgccgagg ttgatgccga cgcgcagccg caggggctcg
     1741 gcgttcgcgg cctcgcgctc cgcggtgcgc tcctggatgg cgatcgcggc gcgcacggcc
     1801 tcgacggggc ttgcgaactc ggcgaggaag ccgtcgccca tggtcttgac gaggcgcccg
     1861 gcatgttcgc cgagcaccac ctcgatgacc tccttgcgaa aggcgcggac gcgggcgtgc
     1921 gtcccttcct cgtcgcgctc catcaggcct gagaagcccg cgatgtcggc ggcaagaatc
     1981 gcggcgaggc ggcgggtcgg catggtgcgt ccctgacgtc aggccgagca ttctgctcat
     2041 tgccgcgagg acggcaacat cgctgggcta ccccttccgg gcggccatgc tcccggccga
     2101 gtctcggctg ccgcaaggcg caagccgatg agcacgaacc cgcgccggca ggctgaacaa
     2161 gagcacaccg gccggggttt ccctgcagcg cgaaacggag caccctgcct tcagcttgga
     2221 gttccagaac atggagcgtg ccatggcgct gaggcgggtg ctcgccgcat tgctgttcgc
     2281 tgccgccacg ctcgcagcgc cgcccctgcg cgcacaaggc gagacggagg tcgatctcgc
     2341 cctggtgctt gcggtcgacg tctcccgctc catggacgtc gacgagcagc ggcttcagcg
     2401 cgacggcttc atcgaggcgt tccaatcgcc ggccgtgcac gaggcaatcc ggaagggctc
     2461 actcgggcgc atcgccgtcg tctacgtgga atggtcgggc gcgctcgagc agaaggtcgt
     2521 ggtgccctgg accatcatcg acggcccggg gacttcggcg gccttctccg agcgcctcgc
     2581 gcagacgccg atcgggctgt tgctgtcgac ctcgatctcg ggcgccatcg acttcggcgc
     2641 gcggctgttc gggcagagcg gcgtcgacgc catgcggcgg gtgatcgaca tctccggcga
     2701 cggccccaac aacaccgggc gcaccgtcac gctcgcccgc gacgacgcgg tggcgcaggg
     2761 aatcgtcatc aacggcctgc cgatcatgat gaagcgcccg acgggcttcg gcgacatcga
     2821 gaacctcgac tggtactacc gggactgcgt catcggcggc gccggatcgt tcatcgtgcc
     2881 ggtgcgtgag cgctcgcact ttgccgaggc gatcaagacg aagctcgtgc gcgagatcgc
     2941 cgacgccggc gagtccgagc cgctcgtcaa gcgggcccag gagcgcgagc gcatgaactg
     3001 cctcatcggc gagatgcagc ggcgccagcg ctgggagccg tgagccgccg caacgtcgtt
     3061 catccccggt gatgcgagcc gccggacctg ctaaggcttc cggacctcac gacccggaga
     3121 gagccttggc caccgatcga gacccgcagg cgtcgtcccc cttcgacccc cgcgaagccg
     3181 ccgccggcct cgtcgaggct caccgcacgc ggcggctcct cgacacccgc ggccgggctc
     3241 ccggcggggt cgaggaggcc tatgcggtcc aggaggcggt cgcccgcgag cttgggcccg
     3301 tggcgggctg gaaggtcggc gccaagtcgc ccgatgacac cccgctcgcc gcgccgctgt
     3361 tcgcgagcct catccagcca agcccggcga cctggccgtc cgacgccttc cacatgatcg
     3421 gcatcgaggc cgagatcgcg ttccgcatcg gcaagcctgt agagccccgc ccggcaccgc
     3481 tccaccgcga cgaggtcttc gcgcacgttg caagcgtgca cacggccatc gagatcgtgg
     3541 acacgcggct gcaggactgg tcgaaggccg accggatgtg ggcccttgcc gacaaccaga
     3601 cgaacggcgc cttcgcgtac gacccggtgg gcgtcccctg gcgcgacacg gactatacca
     3661 atgcccaggt gcgcctcgaa gtgaacggca aggttcgcct cgagcaggcg ggcggcaact
     3721 ccggcggcga cccccgagcg ctcttcgtct ggctcgtgaa ccattgcgcc atgcgccgcg
     3781 gcgggcttgc ggccgggacg atcgtcacta ccggctccta cacgggcatg atcttcatcg
     3841 agccgaaggc cgaggtgcgc gcaagcttcg cgggcctcgg cacctgcgag gtccgcttca
     3901 cctgaggcgg ggtcacgccc gccagcgggc gaggttgtcg cgcacgaagg cgtcgtcctg
     3961 ccactcgggg taggtggcgt agaggcggtc gatctcctcc gcctggccgg ggctcagggt
     4021 ctcgtgcgga tcgaggcagt ggatcgacgt catgagcccc tggcggcgca ggatctcatg
     4081 gcagcccggg atgcaccccg cgaagttgtg ggcgacgtcg aagacgacgc tgttgcagtc
     4141 cgtgacgatg ccgtctagcg cgaggatctc gggcgggatc ggcccggcgg cgattgcggc
     4201 cttcaggcgt tcgagcagcg cgacggcgct cttcgtccac acgctccagt gcccgaggag
     4261 gccgccgcgg aagcgcacgg tggcgcggcg ctgcggcgtg cgcacctcga acggggtcac
     4321 gaggtcggag acgatgtggt cgtcgttgcc ggtgtagagg gtgacgcgct cctccgcgcc
     4381 cgccgcgacc acgccgaagg cgacgtcgag ggtggcgtac cggttgaacg gagccacctt
     4441 gatggcgacg acgttctcga cctccgcaaa gcgcgcccag aacgcccgcg agagggagat
     4501 cccgccgacc gccggctgca gatagaagcc gatgagcggc atctcgacgg ccacggcgcg
     4561 gcagtgctcg acgagctcct cctcgctcgc gcccctcatg gccgcgagtg agagcagcac
     4621 tgcgtgatag cccagcgcgc gcgccgtgcg cgcctcttcc accgcctggg cggtgcgccc
     4681 gatcgcgccg gcgatgagga cgagaggacg gtcggtccag gccgcggccg tctcggccgc
     4741 aagctccagc acgggccggt acaggccgac gtcgcggatc gcgaactgtg tcgagtgcac
     4801 cccgacggcg agtccgcccg agccggcgtc gatgtagtag cgcgtgagcg cccgctggga
     4861 cgtgcgatcg aactgccggt ccggtcccag cgcgagaggg tgcgcgggga tcaccgtgcc
     4921 tttgcgaagc tcgcccagca caggggcggg gaggtcggcg tggtgcaggg cgttcgctgc
     4981 catcgggtga tccttcagcc gagctcgggg cccgcgaggg catagacctt gcccggctcg
     5041 tcgaggccgg ggaagcgccc gagggtcatg cgcgtgtagc cgcgctcccg tgtcgccccg
     5101 tgctgcgcga gccagccggc gaggcccgca tgcgcgtccg gcacgtcgat cagcgtgcgc
     5161 ccgctgccct cggccatgcg cgccacgagc gcgcgcgcga tctcgggcgt ctcggccacc
     5221 acgggcccga cctgcgccgc cgtccggccg gggcgcccca tggcgtagcc gacaatcctg
     5281 ccgccgcgct cggcaacgag ggcgggcgcg cggtcgcgca ggtaggcgag cacgtggccg
     5341 cggtgcatgc ggctgcgggt ctcgtcgaag gccgcgatgg tgcgcatgtc ggccgccgtc
     5401 agctcccgga tcgtgcactc aggggcctcg gccggcggga gcggggcgtc gagcacccag
     5461 cgcgagatcg ggtagcggtc ctcgaatccc agcggcagat acaccggccg cccgagctcg
     5521 gtggcgtcca ggccgggaac cgctttggca gcctgcacgg tggcgacgcc gcgctcgagc
     5581 agcatcgtcc cgagcccgcg ccgccgccgg tcgcgggcga cgagcaccat gctgatccac
     5641 gacagccccg gcccgagagg gacgacgagc gagctcgcga cccacccgcg cccgggctcg
     5701 tagacgccga gcgcgcggcc ctccccaagc atgaagcgcc agtcgtcggc ggtctggttc
     5761 cagccggcct cctgcgacag cgcgagcgcc gcgtccgcgt ccgccggctg catcggccgg
     5821 acgaggggct gggtcaccat cgcggcctca gtagcgccca tcgcggacct cgtagtgggt
     5881 cggcttgtcg agggtcggca tagcgcgcgt gagccagtcg gcggtccact cgatcatggc
     5941 gaggagcggc acccgcggat agccgagctc ggcattcatg acgctcgcat tgttgagcca
     6001 gccggtcggg ctctcgctgc cgacgatgcg cggcgtgcgc ccgaagagcg cgccgaaggt
     6061 ttgcgcgagc tcacggatgc tgatggtctc cggcccggtg ac
//
LOCUS       DASQWN010000662         3499 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_488469, whole genome shotgun sequence.
ACCESSION   DASQWN010000662 DASQWN010000000
VERSION     DASQWN010000662.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 3499)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3499)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3499
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_488469"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(420..1922)
                     /locus_tag="VE686_12440"
     CDS             complement(420..1922)
                     /locus_tag="VE686_12440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010682258.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HYY85294.1"
                     /translation="MTVHSETLVIGAGPAGLTAGDMLAKAGRDVLILESDPTYVGGIS
                     RTVSYKGYLFDIGGHRFFSKSREVVDLWNEILPDDFIERPRLSRIYYDGKFYSYPLKA
                     FEALRNLGIVESVACVVSYLKARAQPHPDPQTFHDWVRNQFGERLFQIFFKTYTEKVW
                     GMSCDAISADWAAQRIKGLDLGAAIGHALLAPLKRWRTAPADGPVIKTLIESFRYPRR
                     GPGMMWDAAAAKIRDRGGRVLLDRTVDGLTWNEALRIWTVSVRRSDGSRESYTAKHVV
                     SSAPLGNLVGAIKPTPISSFHARALKYRDFVTVALICKARTTFPDNWIYIHDPAVKVG
                     RVQNFGSWSPEMIPDDRYTCLGLEYFCFEGDGLWNAPDEELVALAKREIAHVGLAAPE
                     DVADACVVRQPKAYPVYDEDYRGNVEMIRLDLESSFPTLHLVGRNGMHKYNNQDHAMM
                     TAMLAVRNILAGERIYDLWGVNEDAEYGEAGVAGAEEALASERLVPRKVA"
     gene            2185..2979
                     /locus_tag="VE686_12445"
     CDS             2185..2979
                     /locus_tag="VE686_12445"
                     /inference="COORDINATES: protein motif:HMM:NF012745.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HYY85295.1"
                     /translation="MINGRKVAVVMPAYNAAATLRRTCAELPLDIVDDVILTDDASSD
                     ETLELAAELGLHTLSHDRNRGYGGNQKTCYRAALARGADIVVMLHPDYQYTPRLVTAM
                     AAMISSGQYDVVLGSRILGGGALEGGMPRYKYVANRILTLIQNLLMKQKLSEYHTGYR
                     AWTRSVLETLPLLECSDDFIFDNQMIAQAMHFGFRVGEISCPTKYFPEASSINFGRSV
                     VYGVGVLRTALAYRLHRMGAVRSSLFAADADKRLAQPAFAMQPATP"
     gene            2976..>3499
                     /locus_tag="VE686_12450"
     CDS             2976..>3499
                     /locus_tag="VE686_12450"
                     /inference="COORDINATES: protein motif:HMM:NF020893.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VTT domain-containing protein"
                     /protein_id="HYY85296.1"
                     /translation="MSGAGRLRLVAAGALAASLLAGVALATADRTSVVEVVKALVAGA
                     QAAGLSGWLAFVCVQTAVAVVGIVPASVIGIAAGAIYGVWVGFLLAAASLLLGAGLAF
                     WLSRSVLSRLIATWSRGASHLAALHEVFAGRGWRFVCLVRLSPLMPFAATSYALALLP
                     ITLRAYCVGTLAALP"
BASE COUNT          539 a         1208 c         1167 g          585 t
ORIGIN      
        1 gtgacccccg cgatccggac accgcatcag ccctgcggag cttcagcctt ggggcctcga
       61 tctcctcagg accaccgcct cgcgcgaatc cgactgtcgc cagccgaaac ttcactcagc
      121 gatgccgccc tgcaaccaga cacctccgga agcacccttg ccgggcggga cggcgataaa
      181 caagcacaaa caaggaacat tgtcaagaac gtgatttgcc gacaacccaa gcccgtcatc
      241 ctcgggcgcc gcaacgcggc gacccgagga ccgcgtcgga ggctcgctgc catggagatc
      301 ctcgggtctt cgctacgctc cgcccgagga tgacgaacgt ggagccggcg gccaagctcc
      361 ttgcgtcttc gcttcgctcc gcccgcggcc gggggcgcgt gtgacgtggg gcggctcgct
      421 tacgccacct tgcgcgggac gaggcgctcg cttgcgaggg cctcctcggc cccggcgaca
      481 ccggcctcgc cgtattcggc gtcctcgttc acgccccaca ggtcgtagat ccgctcgccc
      541 gcgaggatgt tccgcacggc gagcatcgcc gtcatcatcg cgtggtcctg gttgttgtac
      601 ttgtgcatgc cgttgcgccc gacgagatgc agcgtcggga agctcgattc gaggtcgagg
      661 cggatcatct cgacgttgcc gcgatagtcc tcgtcgtaga ccggataggc cttgggctgg
      721 cgcaccacgc aggcgtccgc cacgtcctcg ggcgcggcga gcccgacgtg cgcgatctcc
      781 cgcttggcca gcgccacgag ctcctcgtcg ggtgcgttcc agaggccgtc gccttcgaag
      841 cagaagtatt cgaggccaag gcaggtgtag cggtcgtccg ggatcatctc cggcgaccac
      901 gacccgaagt tctgtacgcg cccgaccttc acggccggat cgtggatgta gatccagttg
      961 tccgggaacg tggtccttgc cttgcagatc agtgcgacgg tcacgaagtc gcggtacttc
     1021 agggcgcgcg catggaagct gctgatcggc gtcggcttga tggcgccgac gaggttgccg
     1081 agcggcgccg aggagaccac gtgcttggcc gtgtagctct cgcgcgatcc gtcgctgcgg
     1141 cgtaccgaga ccgtccagat cctgagcgcc tcgttccagg tgagaccgtc cacggtgcga
     1201 tcgaggagga cgcgtccgcc ccggtcgcgg atcttggcgg cggcggcgtc ccacatcatc
     1261 ccgggcccgc ggcgcggata gcggaacgac tcgatcagcg tcttgatcac aggcccgtcg
     1321 gccggtgccg tgcgccaccg tttcagagga gccaggaggg cgtgcccgat ggccgcgccg
     1381 aggtcgaggc ccttgatgcg ctgcgccgcc caatcggccg agatggcgtc gcacgacatg
     1441 ccccagacct tctcggtgta ggtcttgaag aagatctgga acaggcgctc gccgaattgg
     1501 ttgcggaccc agtcgtggaa ggtctgtggg tccggatgag gctgggcccg agccttgagg
     1561 tacgacacga cgcaggcgac gctctcgacg atgccgaggt tgcgcagcgc ctcgaacgcc
     1621 ttgagcgggt acgagtagaa cttcccgtcg tagtagatcc gcgacagccg cggacgctcg
     1681 atgaagtcgt cgggaaggat ctcgttccag agatcgacga cttcccgcga cttcgagaag
     1741 aaccggtggc cgccgatgtc gaagaggtag cccttgtacg acaccgtccg gctgatgccg
     1801 ccgacatagg tcgggtcgct ctccaggatg agcacgtcgc gcccggcctt ggcgagcatg
     1861 tcccctgccg tcaggcccgc cggccccgca ccgatgacca gcgtctccga atgcacagtc
     1921 atcaagggca gctccgaagc gggaagaccg cttttgactt caggggcgcc tgctccgcgc
     1981 gaggacgcga agaggcgtcg gcgcgaatcg acgaaccgct gcgcacgttg tcaggaaatg
     2041 gttgagggcc ggtaaccctg aggactcgac ccgcctcggt aagggatcag aaacgcgaag
     2101 cgggtcagat cgacggttga aggtcccaaa gccgcggcat cgccacggcc gagcgacccg
     2161 gtccggcttg cggagccaac ggtcatgatc aatggacgca aggtcgccgt cgtgatgccg
     2221 gcctacaacg ccgccgcgac cctgcggcgg acctgcgcgg agctcccgct cgacatcgtc
     2281 gacgacgtga tcctcaccga cgacgccagc tcggatgaga cgctggagct cgcggccgag
     2341 ctcgggctgc atacgctctc gcacgaccgc aaccgcggct acggcggcaa tcagaagacc
     2401 tgctaccggg ccgcgctcgc ccgcggcgcc gacatcgtcg tcatgctgca cccggactat
     2461 cagtacacgc cgcgcctcgt gaccgcgatg gcggccatga tctcgtcggg ccagtacgac
     2521 gtggtgctcg ggtcgcgcat cctcggcggc ggcgccctcg agggcggcat gccacgctac
     2581 aagtacgtgg ccaaccgcat cctgaccctg atccagaatc tgctgatgaa gcagaagctg
     2641 tcggagtacc acaccggcta ccgcgcgtgg acgcgctcgg tgctcgagac gctgcccctg
     2701 ctcgagtgct cggacgactt catcttcgac aaccagatga tcgcccaggc gatgcacttc
     2761 ggcttccgcg tcggagagat ctcctgcccg accaagtact tcccggaggc gtcctcgatc
     2821 aacttcgggc gcagcgtcgt ctacggcgtc ggggtcctgc gcacggcctt ggcgtatcgc
     2881 ctccaccgca tgggagcggt ccggagctcg ctcttcgccg ccgatgccga caagcgcctg
     2941 gcgcagccgg ctttcgccat gcagccggca acgccatgag cggcgcgggc cggcttcgcc
     3001 ttgtcgcggc gggagcgctc gccgcatcct tgctcgccgg ggtggccctc gctactgcgg
     3061 atcgcacgag cgtcgtcgag gtcgtcaagg cgctcgtggc gggcgcacag gcggccggcc
     3121 tcagcggctg gctcgccttc gtctgcgtcc agaccgcggt cgcggtcgtc gggatcgtgc
     3181 cggcctccgt gatcgggatc gcggcaggcg ccatctacgg tgtctgggtc ggcttcctcc
     3241 tcgccgccgc gagcctactt cttggcgccg ggctggcgtt ctggctcagc cgctcggttc
     3301 tgagccggct catcgccacg tggagccgcg gcgcatcgca cctcgccgcg ctgcatgagg
     3361 tgtttgccgg ccgcggctgg cgcttcgtct gcctggtgcg gctttcgccg ctgatgccgt
     3421 tcgccgcgac gagctacgcg cttgcgctgc tgccgatcac gctgcgcgcc tactgcgtcg
     3481 gtacgctggc cgccctgcc
//
LOCUS       DASQWN010000663         4744 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_886124, whole genome shotgun sequence.
ACCESSION   DASQWN010000663 DASQWN010000000
VERSION     DASQWN010000663.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 4744)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4744)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4744
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_886124"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            114..1457
                     /locus_tag="VE686_12455"
     CDS             114..1457
                     /locus_tag="VE686_12455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019400106.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="erythromycin esterase family protein"
                     /protein_id="HYY85297.1"
                     /translation="MTDRPLAERTRGAAADDAGRLVRAHAERLPAIAEHDAFAALFDR
                     YADAKVVLLGEATHGTSEFYRARAAITRRLIERHGFTIVAVEADWPDAARIDDYVRHR
                     APEPRRDEAFTRFPTWMWRNVEVREFVHWMRTHNEAVAPERRAEFRGLDVYSLSSSID
                     AVLAYLDKVDPEEAKEARARYACLSPWQADPALYGRAVLHGRKKPCDEALLSQLRDLL
                     DSRLDYLAKDREGFFDAVQNARIAHAAEHYYRIMYHGSTESWNVRDRHMFDTLQRLLA
                     RRGQGAKAVVWAHNSHIGNAAATAMGWQGEFNIGELCRTAYGEEAVLIGFSTDRGTVA
                     AASDWDEPMEVKTVRPVRPDSHERVFLDAAVPHALVDWRDPTRGDLRAELAQARLERA
                     IGVVYRPETELYSHYFEAVLSDQFDALVWFEQTKAVTPLPAGHGRGMPETYPFGL"
     gene            complement(1462..2154)
                     /locus_tag="VE686_12460"
     CDS             complement(1462..2154)
                     /locus_tag="VE686_12460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009764240.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_process: GO:0006749 - glutathione metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione S-transferase N-terminal
                     domain-containing protein"
                     /protein_id="HYY85298.1"
                     /translation="MTTPRSTIASSPERNRVGAMYALYYYPGNASLLPHMMLREIAAP
                     FELRLVDRGANAHKSVEYLRLNPNGLIPVLVDGNLVLYETAAIALHLCDRHPEAGLAP
                     PVGTDERAHFYKWMMHLTNTVQPAFLSYFYPDRYVGAASAVPLVKARAEERLAGMFDV
                     IADEIGKRPWLLGDRFSAADLFLTLVIRWGRGMTRPPRAIPALGALAERVLVRPAVRA
                     AIEAEGLQPPLI"
     gene            2625..3452
                     /locus_tag="VE686_12465"
     CDS             2625..3452
                     /locus_tag="VE686_12465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008967679.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c oxidase subunit II"
                     /protein_id="HYY85299.1"
                     /translation="MGVVLALVLVAVGSVVFHFLSPWWWTPIASNWGYIDSTILVTFW
                     ITGAVFVAIVLFMAYCVFRFRNRPGNRAHYEPESKRLETWLTVATGVGVAAMLAPGLF
                     VWHQFVTVPKDATEIEVVGQQWRWSYRLPGKDGRLGTSDTRSVSSDNPLGLNSKDSNG
                     QDDVVIDGDDLHLQVGKPVKVLLRSIDVLHDFYVPEFRAKMDFVPGTVTYFWLTPTRT
                     GTFDVLCAELCGSGHSAMRGSVVVDDEPAYSAWLAKQKTFAELGSGSKIMKASYRND"
     gene            3495..>4744
                     /locus_tag="VE686_12470"
     CDS             3495..>4744
                     /locus_tag="VE686_12470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018272275.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004129 - cytochrome-c oxidase activity
                     [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA];
                     GO_process: GO:0009060 - aerobic respiration [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cbb3-type cytochrome c oxidase subunit I"
                     /protein_id="HYY85300.1"
                     /translation="MVDTAFGAPGTIPPAEVADVELYHPHSFVTKYVFSQDAKVIAIQ
                     YSLTAVAIGLIALVLSWLMRLQLGFPGTFSFIDPNQYLQLITMHGMIMVIYLLTALFL
                     GGFGNYLIPLMVGARDMVFPYVNMLSYWIYLLAVLVLVASFFVPGGPTGAGWTLYPPQ
                     AILPNTPGHEYGIILMLVSLIIFIIGFTMGGLNYVVTVLQGRARGMTLMRLPLTVWGI
                     FTATVLALLAFPALFVGCVMMLFDRLLGTSFFMPAISQLGEQLKYGGGSPILFQHLFW
                     FFGHPEVYIVALPAFGIVSDLISTHARKNIFGYRMMVWAIVGIGALSFIVWAHHMYVS
                     GMNPYFGFFFATTTLIIAVPTAIKVYNWVLTVWRGDIHLTIPMLFALAFIVTFLNGGL
                     TGLFLGNVVVDVPLSDTLFVVAHF"
BASE COUNT          763 a         1624 c         1511 g          846 t
ORIGIN      
        1 ccgtcgcggc attcccccag ctcgccctct ggctgccgcg cgtgctcggc tactgatctt
       61 ggcgccggaa cagttctgaa acggctcccg tttctcagga aacggagcct ctcatgaccg
      121 accgccctct ggccgagcgc acgcgtggag ccgccgccga tgacgccggc cgcctcgtcc
      181 gcgcccacgc cgagcgcctg cccgccatcg ccgagcatga tgccttcgcg gctctgttcg
      241 atcgctacgc cgacgccaag gtggtgctgc tcggcgaggc gacgcacggc acgtcggagt
      301 tctaccgggc gagggcggcg atcacccggc ggctgatcga gcggcacggc ttcaccatcg
      361 tcgcagtcga ggccgactgg cccgacgccg cccgcatcga cgactacgtg cgccaccgtg
      421 cgccggagcc gcgacgcgac gaggccttca cgcgctttcc gacctggatg tggcgcaacg
      481 tcgaggtccg agaattcgtg cattggatgc gcacccacaa cgaggcggtg gcgcccgagc
      541 gccgggccga gttccgcggc cttgacgtct acagcctgtc gtcctccatt gacgccgtcc
      601 tcgcctacct cgataaggtc gacccggagg aggcgaagga ggcccgtgcg cgctacgcct
      661 gcctgtcgcc ctggcaggcc gatccggcgc tctacggccg cgccgtcctg cacgggcgca
      721 agaagccctg cgacgaggcg ctgctctcgc agctgaggga cctgctcgac agccgcctcg
      781 attatctcgc caaggacagg gaaggcttct tcgacgcggt ccagaacgct cgcatcgccc
      841 acgccgcgga gcactactac cgcatcatgt accacggctc taccgagagc tggaacgtgc
      901 gcgaccggca catgttcgac accctccagc ggctcctcgc gaggcggggg cagggggcga
      961 aggccgtcgt ctgggcgcac aactcgcaca tcggcaacgc tgccgcgacc gccatggggt
     1021 ggcagggcga gttcaacatc ggcgagctct gccgcaccgc ctacggcgaa gaggctgtgc
     1081 tgatcggctt ctcgacggac cggggcaccg tcgcggctgc aagcgactgg gacgagccca
     1141 tggaggtgaa gaccgtgcgc ccggtccgcc ccgacagcca cgaacgcgtc ttcctcgacg
     1201 ccgcggtgcc gcatgccctc gtcgactggc gcgacccgac ccgcggcgac ctgcgcgccg
     1261 agctcgcaca ggcgcggctc gagcgcgcca tcggcgtcgt gtaccgtccc gagactgagc
     1321 tctacagcca ctacttcgag gccgtgctgt cggaccagtt cgacgccctg gtctggttcg
     1381 agcagacgaa ggccgtcacg cctctcccgg ccggacacgg gcggggcatg cccgagacct
     1441 atccgttcgg actgtgaagg ctcaaatcag cggcggctga aggccctcgg cctcgatggc
     1501 ggcccggacc gcgggcctga caagcacccg ctccgcaagc gcaccgaggg ccgggatggc
     1561 gcgtggcgga cgagtcatgc cgcgccccca gcgaatgacg agcgtcagga aaaggtcggc
     1621 cgccgagaag cggtcgccga ggagccacgg ccgcttcccg atctcgtcgg cgatgacgtc
     1681 gaacatgccc gcgagccgct cctcggcgcg cgccttcacg agaggaacgg cggaggccgc
     1741 accgacgtag cggtcggggt agaagtacga gagaaacgcc ggctgcaccg tgttggtgag
     1801 gtgcatcatc catttataga agtgcgcccg ctcgtccgtc ccgaccggcg gtgcgagccc
     1861 ggcctccggg tgccggtcgc agaggtgcag ggcgatcgcg gcggtctcgt acaggacgag
     1921 gttgccatcg acgagaacag ggataagccc gttcgggttg agcctcaggt actccacgct
     1981 cttgtgtgcg ttggcgccgc ggtcaacgag ccgcagctcg aacggggcgg cgatctcgcg
     2041 cagcatcatg tgcggcagca ggctcgcatt tcccgggtag tagtagagcg cgtacatcgc
     2101 tcctacccgg ttgcgctcgg gcgaacttgc gatcgtcgaa cggggtgtcg tcatacgcgc
     2161 tcgttcctta gtggggctgc cggactgtgc ccggcagccc cagccaccgc aatggcggtc
     2221 gctcgtcggc tcacgaaagg ctgcgagaac aagcgcgacg caagggaatg accgccgagg
     2281 cgatgtatcg gcaccacttc gtcggcaaca ttcggcgggg atgtgccccc cgggccgatt
     2341 gacaactagg cacccgtgcc taagctcatg tcgtcttggc ggcgatatgt gcatttttgt
     2401 aagtaatcgc tcagccacga ccacgtgcat ggaaggcacg aacatgacgg ccgctacgtc
     2461 agccatcggc ttgcaccggc gtctccgtcg ccggcgcgcg atggtcgcgg tccttgggac
     2521 atcctgccgg aagcacaacg gctcgcctta cgcctcgaag ggccgctgtc gaacggacac
     2581 ttcgaaggcg acccgctgcg gccagttgga cgagaggtga gacgatgggg gtcgtgcttg
     2641 cgctggtgtt ggttgctgtc ggatccgttg tcttccactt cctgagcccc tggtggtgga
     2701 ccccgatcgc ctcgaattgg ggctacatcg acagcaccat cctggtcacg ttctggataa
     2761 ccggcgcggt gttcgtcgcg atcgtcctgt tcatggcgta ctgcgtgttc cggtttcgca
     2821 accggccagg caaccgggcc cactatgagc ccgagagcaa gcggctcgag acgtggctga
     2881 ccgtcgccac gggcgtcggc gttgccgcga tgctcgcccc gggactcttc gtctggcacc
     2941 agttcgtgac cgtcccgaag gacgcgaccg agatcgaggt cgtcggccag cagtggcgct
     3001 ggagctaccg cctcccgggc aaggacggcc ggctcggcac atcggacacg cgcagcgtca
     3061 gcagcgacaa tccgctcggg ctcaattcaa aggactcgaa cgggcaggac gacgtcgtca
     3121 tcgacggcga cgatctacac cttcaggtcg gcaagcccgt gaaggtgctc ctgcgctcga
     3181 tcgacgtgct gcacgacttc tacgtccccg agttcagggc caagatggac ttcgtcccgg
     3241 gcaccgtcac ctatttctgg ctcacgccga cgcgcacggg gacgttcgac gtcctgtgcg
     3301 ccgagctatg cggctccggc cactcggcca tgcgcgggtc ggtcgtggtc gacgacgagc
     3361 cggcgtacag cgcctggctc gccaagcaaa agacgtttgc ggaactcggc tcgggctcca
     3421 agatcatgaa ggcgagctac cgcaacgact aataacgaac cgcgcgacaa gagcggacct
     3481 ggaggggact ggtgatggtc gacacggcgt ttggagcacc cggcacgatc ccgcctgcag
     3541 aagtcgcaga cgtcgagctc tatcatccgc acagcttcgt cacgaagtac gtcttctcgc
     3601 aggacgccaa ggtcatcgcc atccagtact cgttgaccgc ggtggcgatc gggctcattg
     3661 ccctggttct ctcgtggctc atgcggttgc agctcggttt tccgggcact ttctcgttca
     3721 tcgatccgaa ccagtacctt cagctcatca ccatgcacgg catgatcatg gtgatctacc
     3781 tgctcaccgc gctcttcctc ggcggcttcg gcaattacct catcccgctc atggtcggcg
     3841 cacgggacat ggtgttccct tacgtgaaca tgctgagcta ctggatctac ctgctcgcgg
     3901 tgctggtcct cgtggcgagc ttcttcgtgc ccggcggtcc gaccggggcc ggttggacgc
     3961 tctatccgcc gcaggccatc ctgcccaaca cgccgggcca cgagtacggc atcatcctga
     4021 tgctcgtctc gctcatcatc ttcatcatcg gcttcacgat gggcggcctc aactacgtgg
     4081 tcacggtcct gcagggacgg gcccgcggca tgacgctgat gcgcttgccc ctgaccgtct
     4141 ggggcatctt caccgccacc gtgctggcgc tccttgcctt cccggcgttg ttcgtcggct
     4201 gcgtcatgat gctgttcgat cggcttctcg gcacgagctt cttcatgccg gctatttcgc
     4261 agctcggcga gcagctgaag tacggcggcg gcagcccgat cctgttccag cacctgttct
     4321 ggttcttcgg ccatcccgag gtctacatcg tcgccctgcc ggctttcggc atcgtctcgg
     4381 acctgatcag cacacacgca cgcaagaaca tcttcggtta ccgcatgatg gtgtgggcga
     4441 tcgtcggcat cggggccctc agcttcatcg tgtgggcgca ccacatgtac gtgagcggca
     4501 tgaacccgta cttcggtttc ttcttcgcga ccacgacgct catcatcgcc gtccccacgg
     4561 cgatcaaggt gtacaactgg gtgctcaccg tctggcgcgg cgacatccac ctcaccattc
     4621 ccatgctgtt cgcgctcgcg ttcatcgtga ccttcctgaa cggcggtctc acggggctct
     4681 tcctcggcaa cgtggtcgtc gacgtgccgc tctccgacac cctgttcgtc gtcgcgcatt
     4741 tcca
//
LOCUS       DASQWN010000664         4256 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_489005, whole genome shotgun sequence.
ACCESSION   DASQWN010000664 DASQWN010000000
VERSION     DASQWN010000664.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 4256)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4256)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4256
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_489005"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2951)
                     /locus_tag="VE686_12475"
     CDS             complement(<1..2951)
                     /locus_tag="VE686_12475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009763449.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter permease subunit"
                     /protein_id="HYY85301.1"
                     /translation="MQVSDIFIRRPVFAVVVSLLLIVGGLVAFSGLAVREYPAVDPPI
                     VSVNTVYKGASNEVIESRVTELIEGSIAGLESIRQISSTSQNERSSVVIEFLVGRDPD
                     AAAADVRDRVGRIISRLPDGIDQPVVRKVDSNAAAIMWIGVTSTSLDALELTEFMKRV
                     YVDRLATVPGVATVYIGGERRYAMRVWIDRAALAARGLTVQDVETAIRRQNVELPGGL
                     ISSSKRELTVKTDSRLSSPAEFQQIIVSNRNGYLVRLGEVARAEVGAEDDRFEFFKDG
                     KPAIGLGIVRQSTANTLAVADAVKAELEKLKPALPPGTATDIMYDESSFIRASIDGVL
                     HTLVEGIGLVILVILIFLRDWRSTIVAMVAIPVSVIASFMVVAFFGASINVLTLLAIV
                     LAIGIVVDDAIVEIENIHRRIEHGEPPLLASFDGAREIGFAVIATTMTLMAVFVPLAF
                     MSGNTGRLFREFAIQLAAAIFFSGVVARTLTPMMCSKLMVPAHGPIHRWTEPVFTSMT
                     NGYRWLLSRALRIPIVILALGAVVSFSAVLLFQALPKEFTPAEDRGFILIPLAAPEGS
                     SVAYTRDRVKEVEQAIEPLASRGLMWSMLSLVSPGFIRPAPVNEGLVIARLIPWDQRD
                     VRSPQLIKELYGSVANFPGARAFPINPPSLGQRGFQQAIQFVIGGPDYETLRDWRDRV
                     MTKAGTTGLFVNLDSDYKENQPDLRVQIDRSRAADLGVSVEDVGKTLELMFGEKQVSS
                     FVSRGQEYYVIIRAREEDRAAPNDLSNAFMRSTNGELVPLAAFVSLRETAAPQKLNRF
                     DRLRSITIQGSLAPGASIGQGLEALERIAREELPPEARIGYQGQSKEFKDSSNAIYVT
                     FGMALIVVFLVLAGQFESWINPLIVMLTVQLAVTGGLLALFLTGQSLNIYSQIGMILL
                     IGLMTKNGILIVEFANQLRQRGMSVREAVIESSVLRLRPILMTSIATMGGAIPLAWST
                     GAGAEARNAIG"
     gene            complement(3167..>4256)
                     /locus_tag="VE686_12480"
     CDS             complement(3167..>4256)
                     /locus_tag="VE686_12480"
                     /inference="COORDINATES: protein motif:HMM:TIGR01730.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="efflux RND transporter periplasmic adaptor
                     subunit"
                     /protein_id="HYY85302.1"
                     /translation="PAAPGGGPQQAAPQTPPPVVDVDTVRTAAIVETREAVGTVRALE
                     SIVVTAKAPGTVQAITFEEGARVKAGDELLRLDADERRADIEQAVAEMRRAAAQRDET
                     RVRLERATALRRTGAGTEAQVADLSAQLATLESAIASAGARRKAAEARLDDLTIRVPF
                     AGRLGSRAVSVGAYVSPGTRITTLDDLSRVRLDFSVPENILATLKVGRIVRALSAAFG
                     ERIFEGSVTLIDPRIDPVTRTAKLTAEFPNPDETLKPGMFLSVALEVTNKPNAVVVPE
                     EAIVGEGLRHLLFVVKDDKTIDRRVVRIGQRQSTVVEILDGVKPGETIVVRGVQRVRP
                     GMTVAPRPVTAGSLSSGDRAAAAPERRT"
BASE COUNT          681 a         1404 c         1543 g          628 t
ORIGIN      
        1 caaccgatgg cgttgcgcgc ctcggcgccg gcgccggtcg accaggcgag cgggatggcg
       61 ccgcccatgg tggcaatcga cgtcatgaga atcggcctga ggcgcagcac ggacgactcg
      121 atcaccgcct cgcgcaccga catgccgcgc tggcgcaact ggttggcgaa ctcgacgatc
      181 aggatgccgt tcttggtcat cagcccgatc agcaggatca tgccgatctg gctgtagatg
      241 ttgagcgact gcccggtaag gaacagggcg aggagcccgc ccgtcacggc aagctgcacc
      301 gtcagcatca cgataagcgg attgatccag ctctcgaact ggcccgcgag caccaggaac
      361 acgacgatca gcgccatgcc gaaggtcacg tagatggcgt tcgatgaatc cttgaactcc
      421 ttcgactggc cctggtagcc gatgcgcgcc tcgggtggca gctcctcgcg cgcgatgcgc
      481 tcgagcgcct cgaggccctg gccgatggat gcgcccggcg cgagcgagcc ctggatggtg
      541 atcgagcgca ggcggtcgaa gcggttgagc ttctgcggtg cagcggtctc gcgcaaggag
      601 acgaaggcgg caagcgggac gagctcgccg ttcgtcgagc gcatgaaggc gttggagaga
      661 tcgttcggcg cggcgcggtc ctcctcgcgc gcgcggatga tgacgtaata ctcctggccg
      721 cggctgacga agctcgagac ctgcttctcg ccgaacatca gctcgagcgt cttgccgacg
      781 tcctcgaccg agacgccgag atcggcggcg cgggagcggt cgatctggac ccgcaggtcg
      841 ggctggttct ccttgtagtc ggagtcgaga ttgacgaaga ggccagtggt tccggccttg
      901 gtcatgacgc ggtcgcgcca gtcccgcagc gtctcgtagt cggggccgcc gatgacgaac
      961 tggatggcct gctggaatcc gcgttgtccc agggacggcg ggttgatcgg aaacgcgcgc
     1021 gccccgggaa aattcgcgac ggagccgtac agctccttga tcagctgcgg cgagcgcacg
     1081 tccctctggt cccaagggat caggcgcgcg atgacgaggc cctcgttgac gggcgccggg
     1141 cggatgaagc ccggcgagac gaggctcagc atgctccaca tcaagccgcg cgacgcgaga
     1201 ggctcgatcg cctgctcgac ctccttcacg cgatcgcgcg tgtaggcgac gctcgacccc
     1261 tccggggcgg cgagcgggat caggatgaag ccgcggtcct ccgcaggcgt gaactccttc
     1321 ggcagcgcct gaaacagcag caccgccgaa aacgagacaa ccgcgccgag ggcgaggatg
     1381 acgatcggga tgcgcagcgc ccgtgacagg agccagcggt agccgttggt catgctggtg
     1441 aacacgggct cggtccagcg atggatcggg ccgtgcgccg gcaccatcag cttcgagcac
     1501 atcatcggcg tcagcgtgcg cgcgacgacc ccggagaaga agatggccgc cgcgagctgg
     1561 atcgcgaact cgcggaacag ccggccggtg ttgccggaca taaaggcgag gggcacgaac
     1621 accgccatca gcgtcatggt ggtggcgatg acggcgaagc cgatctcgcg ggccccgtcg
     1681 aaggaggcga gcagcggcgg ctcgccgtgc tcgatgcggc ggtggatgtt ctcgatctcc
     1741 acgatggcgt cgtcgacgac gatgccgatg gcgaggacga tggcgagaag cgtgagcacg
     1801 ttgatggacg cgccgaagaa cgcgaccacc atgaacgacg cgatcaccga caccgggatc
     1861 gcgaccatgg cgacgatggt cgagcgccag tcgcgcagga agatcaggat gacgaggatg
     1921 acgaggccga tgccttcgac gagggtgtgg agcacgccgt cgatcgaggc gcggatgaag
     1981 ctcgactcgt cgtacatgat gtccgtcgcg gtgccgggcg gcagcgcggg tttcagcttc
     2041 tccagctctg ccttgacggc gtcggcgacc gcgagcgtgt tcgccgtcga ctggcgcacg
     2101 atgccgaggc cgatcgcggg cttgccgtcc ttgaagaact cgaagcggtc gtcctcggcc
     2161 ccgacctcgg cgcgcgcgac ctcgccgagc cgcacgaggt agccgttcct gttcgacacg
     2221 atgatctgct ggaactcggc cggcgacgac agccgcgagt cggtcttcac cgtcagctcg
     2281 cgcttcgagg atgagatcaa gccccccggc agctcaacgt tctggcgccg gatcgcggtc
     2341 tcgacgtctt ggacggtgag cccgcgtgcc gcgagcgcgg cgcggtcgat ccacacccgc
     2401 atggcgtagc ggcgctcgcc gccgatgtag accgtcgcca cacccggcac cgtcgcgagc
     2461 cggtcgacgt agacccgctt catgaactcg gtcagctcga gggcgtcgag gctcgtcgag
     2521 gtgacgccga tccacatgat ggccgcggcg ttcgagtcga ccttgcgcac gaccggctga
     2581 tcgatgccgt cgggcaggcg cgagatgatg cggccgaccc ggtcgcgcac gtccgcggcc
     2641 gcggcgtcgg ggtcgcgccc gacgaggaac tcgatcacga ccgaggagcg ctcgttctgg
     2701 ctcgtggagg agatctgccg gatgctttcc agcccggcga tcgagccctc gatcagttcc
     2761 gtgacgcggc tttcgatgac ctcgttcgat gcgcccttgt agaccgtgtt gaccgagacg
     2821 atcggcggat cgacggccgg atattcgcgt accgcaaggc ccgagaaggc cacgagcccg
     2881 ccgacgatca gcaacaggct gaccaccacc gcgaacaccg gccggcgaat gaagatgtcg
     2941 gaaacctgca tcgacgcgga ccttcagcgc ggagcggacg tgatcctccc ccgcgcagcg
     3001 ggggaggggg accatgcgaa gcatggtgaa gggggcacga tctgccgcgg ccgtcccgta
     3061 tcgagccgtc ggcccatggt gccagaaggc cgcgcgaggg gctgccccct ccagccgtgc
     3121 ccctcctcgg ctgctcgggg gaagatcggg acggcctttg cgctgctcat gtccggcgct
     3181 cgggcgcggc tgccgcccgg tcgcctgacg agaggctgcc agcggtgacg gggcggggcg
     3241 ccactgtcat gccggggcgc acgcgctgga cgccgcggac cacgatggtc tcgcccggct
     3301 tcacgccgtc gaggatctcg acgacggtgc tttggcgctg gccgatgcgg acgacgcggc
     3361 ggtcgatggt cttgtcgtcc ttcaccacga acaggaggtg gcgcaggccc tcgccgacga
     3421 tcgcctcctc gggcaccacc acggcgttcg gcttgttggt cacctcgagg gcgacggaca
     3481 ggaacatgcc cggcttcagg gtctcgtccg ggttcgggaa ctcggccgtc agcttcgcgg
     3541 tgcgcgtcac cggatcgatg cgcggatcga tcagcgtgac gctgccctca aagatgcgct
     3601 cgccgaacgc ggccgagagc gcacgcacga tccgcccgac cttcagggtg gcgagaatgt
     3661 tctcggggac cgagaagtcg aggcggaccc gcgagaggtc gtcgagggtt gtgatgcgag
     3721 tcccgggcga cacgtaggcg ccgaccgaaa ccgcgcggct gccgagccgg cccgcgaagg
     3781 gcacccggat ggtgaggtcg tcgaggcgcg cctcggcggc cttgcggcgg gcgccggcgg
     3841 aagcgatggc gctctcgagg gtcgcgagct gcgccgagag gtcggcgacc tgcgcctccg
     3901 tcccggcacc cgtccggcgc agggcggtgg cgcgctcgag gcggacgcgc gtctcgtccc
     3961 gttgcgcggc ggcgcggcgc atctccgcca cggcctgctc gatgtcggcg cggcgctcgt
     4021 cggcgtcgag gcgcaggagc tcgtcgcccg ccttgacccg cgctccttcc tcgaacgtga
     4081 tggcctggac ggtgccgggc gccttggcgg tgacgacgat ggactcgagg gcacggaccg
     4141 tcccgaccgc ctcgcgcgtc tcgacgatcg ccgccgtgcg cacggtgtcg acgtcgacta
     4201 cggggggcgg cgtctggggc gccgcctgct gcggcccgcc gccgggcgcc gcgggc
//
LOCUS       DASQWN010000665         6033 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_886530, whole genome shotgun sequence.
ACCESSION   DASQWN010000665 DASQWN010000000
VERSION     DASQWN010000665.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 6033)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6033)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6033
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_886530"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..686)
                     /locus_tag="VE686_12485"
     CDS             complement(<1..686)
                     /locus_tag="VE686_12485"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HYY85303.1"
                     /translation="MSRILIVVTHLLGAGHLTRASALARAFMRAGYEVTVVTGGMPTR
                     QWVVEGLAVVQLPPVRTQGFDFKTLLDEDGSTVSPEHRAARRRLLLDTFEAVRPDVVL
                     TELFPFGRRTLSTEFMALLEAAHARRPRPIVVSSIRDILEPPHKPERAVEAHERVRAY
                     YDAVLVHGDAAVVTLDRSWPVDDGIRALLRATGYVDGGGRASPEQEPAGDIVVSGGSS
                     SGGVRLYRTGG"
     gene            complement(683..1735)
                     /locus_tag="VE686_12490"
     CDS             complement(683..1735)
                     /locus_tag="VE686_12490"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018263306.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 4 protein"
                     /protein_id="HYY85304.1"
                     /translation="MARLFLKALDTAGFEPEVASQLRTFDKHGDPARQEALRAASLTE
                     AERLIGDCEARPAASRPRAWFTYHLYYKAPDWIGPAVASALRVPYIVAEASRASKRAG
                     GPWALGHAGTEAALARADAVLAMTALDRAALERNRPARQRLVDLPPFVDLDEWPRDAL
                     RLAERSGRVRLLTVAMMRSGDKLASYRLLAEALRQLEPNGWQLDIVGDGDARAEVEGL
                     FAPFGDRVALNGRIEDRRLSRLYAAADLFVWPAVNEAYGMALLEAQAHACPVVAGACG
                     GVASVVEDGRTGILTAPGDVASFAGAVSSLMADGWRREALGERARAFVREERSLTQAA
                     IRLREVLVPELARAPA"
     gene            complement(1804..3078)
                     /locus_tag="VE686_12495"
     CDS             complement(1804..3078)
                     /locus_tag="VE686_12495"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019401290.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 4 protein"
                     /protein_id="HYY85305.1"
                     /translation="MGARVAVVVKGYPRLSETFIAQEILGLEQRGVALEIWSLRHPTE
                     TAIHPMHKRIAAPLKYLPEYLYREPLRVVKGMAFGLRQPGSRRLLRQFWRDLRRDPTL
                     NRVRRLGQACVLARELAPEVTHIHVHYLHTPASVTRYAALLTGRTWTYSAHAKDIWTT
                     PAWEKREKLADALWGVTCTAYGAEHLRALAPTPERVTLAYHGLDLSRFPKPPRRPARD
                     GSDAADPVRIVCVGRLVAKKGIADLLQALAALPSDLHWRFAHVGGGALLPALKAQAAR
                     DGIADRVAFLGPKAQPDVVALLREADVFALAARQAASGDRDGLPNVLLEAASQGLAIV
                     ATDFAGIPELITAGREGELVPAGDWASLSNAINLLARDPLRRERLGAVAYDRLRRDFS
                     AEGTLDLLAARLRVVLGERAAAPRPAVESAAE"
     gene            complement(3102..4328)
                     /locus_tag="VE686_12500"
     CDS             complement(3102..4328)
                     /locus_tag="VE686_12500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019401289.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016758 - hexosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HYY85306.1"
                     /translation="MSERLGPGARILIYSHDTFGLGHLRRSRAIANALVAEWPDASVV
                     ILSGSPVIGNFEFGSGVDYVRVPGVTKLPDGNYTSLNLNLSLDDAVGLREALILQTAE
                     SFRPDLLIVDKEPTGFRGEILPALEHLRHEGCRLILGIRDVMDEPALLVPEWERKGAS
                     EALARYYDEIWVYGLEEVYRPLAALDLPAEIEARITYTGYLRRGLPKEPALTRYPKLM
                     KQPFILVTTGGGGDGDDLIDWVISAYETDPTLEVPAVFVFGPFINRARRRAFVERIAR
                     HPKLEALPFDTKIELLINKAAAVVAMGGYNTFCEILSLDKRALVVPRTRPRREQLIRA
                     VEAERLGLLRMLCDEGGTRDSGRMAQALRALPQQPRPSQVVVPGLLDGLDVIRDRVGL
                     ALDNARRPCQLRDAAE"
     gene            4515..>6033
                     /locus_tag="VE686_12505"
     CDS             4515..>6033
                     /locus_tag="VE686_12505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009494011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HYY85307.1"
                     /translation="MDKSLFRYVWRHSKRDQIIICAVVMASLPFYFASLDLPRRIVNE
                     AIQGKAFGSGQSTAQFLSWTFSLPSWLGGASFKVFEGFPVDQLQMLMGLSTLFLLLVL
                     VNGAFKYWINVSKGALGERMLRRMRFELFALVLRFTPEALRHVKASETATIIKDEVEP
                     IGGFIGDAFILPAFLGTQATTALIFIFVQNVWLGLMAGTVIGVQFVIIPRLRRELLKL
                     GRERQLASRRLAGRISEVMDGIEVVHVHNATRWERAEIGSRLFSLFDIRYRIYKRKFI
                     VKFLNNLLAQLTPFLFYSVGGYLALKGRLDIGQLVAVIGAYRELPPPLKELIDWDQQR
                     LDVQVKYDQVVQHFAPERLGPEPPPEGEAEDTPITGPLAVADLRVMDQHGTPIIDGAS
                     FECPLPARVGILGEGGQAGSVFARILAGRSSEYAGEVKLGDRKLSELSRGTLGRRIAY
                     AGVDPILFPGTLRDNIVYGLRYRPVTQGEQDDREKARRIAEARRTGNPVETIEDQW"
BASE COUNT          940 a         2059 c         2101 g          933 t
ORIGIN      
        1 ccccccgtcc ggtacaggcg aacgccgccc gagctcgagc cccccgagac gacgatgtcc
       61 cccgcaggct cctgctccgg cgaggcgcgg ccgccgccgt ccacgtaccc ggtcgcccgc
      121 agaagcgcgc ggatgccgtc atcgacgggc caggaccgat cgagcgtcac taccgcggcg
      181 tcgccatgca ccaggacggc gtcgtagtat gcccgcacgc gttcatgcgc ctcgacggcc
      241 cgctcgggct tgtgcggcgg ctcgaggatg tccctgatcg aggagacgac gattgggcgc
      301 ggcctccgcg cgtgcgctgc ctcgagaagc gccatgaact cagtcgagag ggtgcgccgg
      361 ccgaacggaa acagctcggt gagcaccacg tcgggccgca cggcttcgaa ggtgtcaagg
      421 agcaggcgcc gcctcgcggc gcggtgctcc gggctcaccg ttgagccgtc ctcgtcgagc
      481 agggtcttga agtcgaaacc ctgcgtgcgc accggcggga gctgcaccac cgcgagaccc
      541 tcgacgaccc actgcctcgt cggcatgccg cccgtcacga cggtgacctc atatcccgcg
      601 cgcatgaagg cgcgcgccag ggccgaggcg cgggtcagat gccctgctcc gaggaggtgc
      661 gtgacgacga tgaggatccg gctcatgcgg gcgcccttgc gagctcgggt accagaacct
      721 cgcgcaagcg gatcgcggcc tgcgtcaggc tgcgctcctc gcgcacgaag gcgcgcgccc
      781 tctcgccgag cgcctcgcgc cgccatccgt ctgccatgag gctcgagacc gcgccggcga
      841 agctcgccac gtcgcccggg gcggtgagga tgcccgtgcg tccgtcctcg acgacgctcg
      901 cgacgccgcc gcaggcgccc gccaccaccg ggcaggcgtg cgcctgcgcc tcgagcagcg
      961 ccatgccgta ggcctcgttc acggcgggcc agacgaagag gtccgcggcg gcgtagagcc
     1021 gcgaaagcct ccggtcttcg atgcggccat tcagggcgac gcggtcgccg aatggcgcga
     1081 acaggccctc gacctcggcg cgcgcgtctc cgtcaccgac gatgtcgagc tgccaaccgt
     1141 ttggttcgag ctgccgaagg gcttcggcga gcagccggta tgaggcgagc ttgtcgcccg
     1201 agcgcatcat cgcgacggtg agcagccgga cccgcccgct gcgctccgct agtcgaagag
     1261 cgtcccgcgg ccattcgtcg aggtcgacga agggagggag atccacgagg cgttgccgtg
     1321 ccgggcggtt gcgttcgagc gccgcgcggt cgagggccgt catcgcaagc acggcatcgg
     1381 cgcgggccag ggcagcttcg gtccccgcgt gacccagggc ccaggggccg cctgcacgct
     1441 tcgaggcgcg cgaggcctcc gcgacgatgt agggcactcg cagggccgag gcgacggccg
     1501 gtccgatcca gtcgggagcc ttgtagtaga gatgataggt gaaccaggcg cgcgggcgcg
     1561 atgccgcggg cctcgcctcg cagtcgccga tcagccgctc cgcctcggtc agagacgcgg
     1621 cgcgcagggc ctcctgccgc gcagggtcgc cgtgcttgtc gaacgttcgc agctggctcg
     1681 ccacctccgg ttcgaagccc gccgtgtcga gagccttcag gaacagccgc gccatcgtcc
     1741 tgtcgcctga tggatccggg tcccgtgggc tcttcagggg cgcatagaag gcgatcggga
     1801 ccctcactcg gccgcacttt cgaccgccgg gcgcggggcc gccgcccgct cgcccagaac
     1861 cacccgtagc cgcgccgcaa ggaggtccag ggtgccttcc gcggaaaagt cgcggcgcag
     1921 ccgatcgtac gcgacggcgc cgaggcgctc gcggcggagc gggtcgcggg cgagcaggtt
     1981 tatggcgttc gagagtgacg cccaatcgcc ggcgggaacg agctccccct cccgcccggc
     2041 cgtgatgagc tccgggatgc cggcaaaatc tgttgccacg atcgccagcc cctggcttgc
     2101 cgcctcgaga agcacgttag gcaacccgtc gcggtcgccc gaagcggctt gccttgccgc
     2161 cagcgcgaaa acgtccgctt cgcgcagcag cgcaaccacg tccggctggg ctttagggcc
     2221 aaggaacgcg acccggtcgg cgatgccgtc ccgtgccgcc tgggctttca gggcgggcag
     2281 aagtgcgccg ccgcccacat gggcgaaacg ccagtgcagg tccgacggca gggcggcgag
     2341 cgcctgcagc aggtcggcga tgcccttctt ggcaacgagc cggccgacgc agacgatgcg
     2401 cacgggatcg gcggcgtccg agccgtcgcg ggccggccgt cgcggcggct tcggaaagcg
     2461 cgacaggtcg agcccgtgat aggcgagcgt cacacgctcc ggcgtgggtg ccaacgcgcg
     2521 caggtgctcg gcgccatacg ccgtgcaggt cacgccccag agcgcgtcgg cgagcttctc
     2581 gcgcttctcc cacgctggcg tagtccagat gtccttggcg tgcgccgaat acgtccaggt
     2641 gcgcccggtg aggagcgccg catagcgggt gacggatgcg ggggtgtgca ggtaatgcac
     2701 gtggatgtgc gtgacctcgg gcgcgagctc gcgagcgaga acgcaggcct ggccgagccg
     2761 ccgcacgcga ttgagcgtcg ggtcgcggcg cagatcgcgc cagaactggc gcaggaggcg
     2821 gcgactgccc ggttgccgaa gaccgaacgc catgcctttc acgacccgca acggctcccg
     2881 atagaggtat tcgggcaagt acttgagcgg cgccgcgata cgcttgtgca tagggtggat
     2941 ggcagtctcc gtcggatggc gcagcgacca gatctcgagc gccaccccgc gctgctcgag
     3001 ccccaagatc tcctgggcga tgaaggtttc cgacaggcgc ggatagcctt tcacgacgac
     3061 cgccacgcgc gcgcccaacc cggcctggag ggtgggaggc actactcggc agcgtccctg
     3121 agctggcagg ggcggcgggc gttatcgagg gcgaggccga cccggtcgcg gatcacgtcg
     3181 agcccgtcga gcaggcctgg tactaccacc tgggacgggc ggggctgctg aggcagcgcc
     3241 cgcagcgcct gcgccatgcg gccgctgtcc cgggtgccgc cttcgtcgca gagcatccgc
     3301 agcaggccca ggcgctccgc ctcgacggcg cgaataagct gttcgcgccg cgggcgggta
     3361 cggggcacca cgagagcgcg cttgtcgagg gacaggatct cgcagaacgt gttgtagcca
     3421 cccatcgcga cgaccgcggc cgccttgttg atcaacagct cgatcttggt gtcgaacgga
     3481 agcgcctcga gcttgggatg tcgggcgatg cgctccacga aggcccggcg gcgcgcgcgg
     3541 ttgatgaagg gcccgaacac gaaaacggca ggcacctcga gggtcggatc ggtctcgtag
     3601 gcggagatga cccagtcgat gaggtcgtcg ccgtcgccgc cgcctcccgt cgtgaccagg
     3661 atgaagggct gcttcatgag cttcgggtag cgcgtcagtg cgggctcctt cggcagcccg
     3721 cggcgcaggt agcccgtgta ggtgatgcgc gcctcgatct cggccgggag atccagcgcc
     3781 gcgagcggcc ggtagacctc ctccaggccg tagacccaaa tctcgtcgta gtagcgggca
     3841 agcgcctcgc tcgcgccctt gcgctcccac tccgggacga ggagggccgg ctcgtccatc
     3901 acgtcccgga tgccgaggat cagccggcac ccctcatggc gtagatgctc gagcgccggc
     3961 aagatctcgc cccggaagcc cgtcggctcc ttgtcgacga tgaggaggtc gggtcggaag
     4021 ctctccgcgg tctggaggat cagcgcttcg cgcaagccca cggcatcgtc gagcgaaagg
     4081 ttgaggttga ggctcgtgta gttaccgtcc ggcagcttgg tgacgcccgg tacccggacg
     4141 tagtcgacgc cgcttccgaa ctcgaagttg ccgatgacgg gcgagcccga caggatcacc
     4201 acggaggcgt cgggccactc ggcgacgagc gcgttggcga tcgcgcgtga acggcgcaga
     4261 tgcccgagtc cgaaggtgtc gtggctgtag atgaggatcc gtgcgcccgg gccgaggcgc
     4321 tcgctcatgc gggagttggg ccccgtacag gtatggatgt tacggtccgc catgccggcc
     4381 gcctacgtgt ccgagcccgt cgaggcatga cggagcctta cacgacctgt cgtacaggcc
     4441 gccgtcaagc ccggcacgat cctcaagcgg aacaatgtat cgcgccgccg cacggaatgg
     4501 tagcttgacc gacgatggac aaaagtctgt tccgctacgt ctggcgtcat tccaagcgcg
     4561 accagataat catctgcgcg gtcgtgatgg cctcgctgcc gttctatttc gcgtcgctcg
     4621 acctgccgcg ccgcatcgtc aacgaggcga tccagggcaa agctttcggg tcggggcaga
     4681 gcactgccca gtttctgtcg tggaccttct cgctcccgag ctggctcggc ggcgcatcct
     4741 tcaaggtctt cgagggcttt ccggtcgatc agctgcagat gctcatgggg ctctcgaccc
     4801 tgttcctgct cctcgtcctc gtcaacggcg cgttcaagta ttggatcaat gtgtcgaaag
     4861 gtgcgctcgg cgaacgcatg ctgcgccgca tgcggttcga gctgttcgcc cttgtcctgc
     4921 ggtttacccc tgaggcgctg cgccacgtca aggcgtccga gacggcgacc atcatcaagg
     4981 acgaggtcga gccgatcggc ggcttcatcg gagacgcgtt catcctgccg gccttcctcg
     5041 gcacgcaggc gacaacggcg ctgatcttca tcttcgttca gaacgtttgg ctcggcctca
     5101 tggccggcac cgtgatcggc gtccagttcg tcatcatccc gcggctacgg cgcgagttgc
     5161 tcaagctcgg ccgggagcgc cagcttgcct ctcgccggct cgccggacgc ataagcgagg
     5221 tgatggacgg gatcgaggtg gtccatgttc acaacgcgac gcgctgggag cgcgcggaga
     5281 tcggcagccg cctcttcagt cttttcgaca ttcgctatcg catttacaag cgtaagttta
     5341 tcgtcaagtt tctcaataac ctgctcgcgc agttgacgcc gttcctgttc tactcggtcg
     5401 gcggctatct cgccctcaag ggccggctcg acatcggtca gctcgtggct gtcatcggcg
     5461 cctaccggga gcttccgcct ccgttgaagg agctgatcga ttgggatcag cagcgtctcg
     5521 acgtacaggt gaagtacgat caggtcgtcc agcatttcgc gcccgagcgc ctcggtcccg
     5581 agcctccccc agagggggag gccgaggaca cgccgatcac cggaccgctc gcggtcgccg
     5641 acctgcgcgt catggaccag cacgggacgc ccatcatcga cggcgcctcc ttcgagtgcc
     5701 cgctgccggc gcgggtcggc attcttggcg agggagggca ggcaggctcc gttttcgccc
     5761 gcatcctggc gggccgaagc agcgaatatg cgggcgaggt gaagcttggc gaccgtaagc
     5821 tctctgagct gtcgaggggg acgctcgggc ggcgcatcgc ctacgccggg gtcgatccga
     5881 tcctcttccc cggcaccctg cgcgacaaca tcgtctacgg cctgcgctac cgaccagtca
     5941 cgcagggcga gcaggacgat cgcgagaagg cgcgccgcat cgccgaggcg cgccggacgg
     6001 gcaatcccgt cgagacgatc gaggaccaat gga
//
LOCUS       DASQWN010000666         3148 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_986349, whole genome shotgun sequence.
ACCESSION   DASQWN010000666 DASQWN010000000
VERSION     DASQWN010000666.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 3148)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3148)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3148
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_986349"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..308
                     /locus_tag="VE686_12510"
     CDS             <1..308
                     /locus_tag="VE686_12510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011663253.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016614 - oxidoreductase activity, acting
                     on CH-OH group of donors [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="GMC oxidoreductase"
                     /protein_id="HYY85308.1"
                     /translation="PPLAPYRPQEYRPGPQAVTQEELVRAAGDIGTTIFHPVGTAKMG
                     ADNDPMAVLDERLRVRGVSALRVIDASAMPRITSGNTNSPTVMIAEKGAAMVIEDGR"
     gene            426..1841
                     /locus_tag="VE686_12515"
     CDS             426..1841
                     /locus_tag="VE686_12515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009762991.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium:proton antiporter"
                     /protein_id="HYY85309.1"
                     /translation="MGRVRGIGLGLVGAIVAEPAFAAELDGRNLGVGWALPFVGILLS
                     IALFPLLAPHFWEHHQGKIAAFWAALVILPLAAFHGVETAASAVVHVVTLEYLPFILL
                     LFALFTISGGIRIKGNLHGSPLTNATLLLIGTGLASLIGTTGASMVMIRPLLRANDNR
                     RYNVHVVVFFIFLVSNIGGSLTPLGDPPLFLGFLRGVDFFWTTTHLFAETLFAAGIVF
                     AVFLVVDAVLYRRETDFLPPVADPTPDSALGVKGLHNLALIGVVIAAILMSAYWKPGI
                     AFEIGGARLELQNVLRDTIFVATALASYALTSPFDREANGFSWGPIKEVAKLFAGIFL
                     CMVPVLAMLRAGLQGPFAPLVALVSNPDGSPNNAAYFWLTGGLSSFLDNAPTYLVFFE
                     LAGGDAARLMTTGALTLAAISCGAVFMGANSYIGNAPNFMVYAIAKDAGVRMPSFFGY
                     MVWSAAVLIPTFLLTTFVFFR"
     gene            complement(1884..2975)
                     /locus_tag="VE686_12520"
     CDS             complement(1884..2975)
                     /locus_tag="VE686_12520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015951119.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HYY85310.1"
                     /translation="MDVLVVGAGVVGLACARALALRGHSVIVAERTSGIGNGVSSRNS
                     EVIHAGMYYPAGSVRARHCVEGRRRLYAFCDSHGVPYRRCGKLIVATNALEEAMIEGI
                     HQQGVTNGVEDLKLIDGDAARALEPNLFATAAVASPQTGIVDSHAFMLALQGDLEDAG
                     GALAFDTGVERLARRAGQWHATLSDDAGEIPFDAVVNAAALGAQALARTTEGYPAERI
                     PKLVYAKGNYFGCVGRPAFTRLIYPSPVDGGLGTHVTLDLAGRMRFGPDVEWIEEEVY
                     EVDPTRVASFYASIRRYWPGLPDDALVPDYSGIRPKLTGPGEPPADFMIEGPAEHGLE
                     RHVALFGIESPGLTASLSLADEVAEKIES"
BASE COUNT          445 a         1113 c         1057 g          533 t
ORIGIN      
        1 agccgccgct cgcaccctac cgtccgcagg agtaccggcc ggggccgcag gccgtgacgc
       61 aggaggagct cgtgcgcgcc gcgggcgaca tcggcaccac catcttccat cctgtgggga
      121 ccgccaagat gggcgccgac aacgatccga tggccgtgct cgacgagcgc ctgcgcgtgc
      181 gtggcgtctc ggctctaagg gtgatcgacg cctcggccat gccgcggatc acgtcgggca
      241 atacgaactc gccgaccgtg atgatcgccg agaagggggc cgccatggtc attgaggacg
      301 ggcgctgagc cttcccggcc ctcgtgggcg atggacgtgg gatttgtccg agcggtttcc
      361 gacccgaggt ttgcagcaga gctggtcttt ccgtaagcac ggccgggact tgcagggggg
      421 gcgccgtggg acgcgttcgt gggattggtc tgggccttgt cggcgccatc gtagccgagc
      481 cggcgttcgc ggcggagctc gacgggcgca atctcggcgt tggctgggcg ctgccgttcg
      541 tcgggatcct actctcgatc gccctgtttc ccctgctcgc gccccacttc tgggagcacc
      601 accagggcaa gatcgcggcc ttctgggcgg ccctcgtcat cctgccgctt gcggccttcc
      661 acggcgtcga gacggcggcg agcgccgtag ttcacgtcgt caccctcgag tatctgccgt
      721 tcatcctcct cctgtttgcc ctgttcacga tctcgggcgg aatccgcatc aagggcaacc
      781 tgcacggcag cccgctcacc aacgcgacgc tgctcctcat cggcacgggg ctcgcgagcc
      841 tcatcggcac caccggcgcc tcaatggtga tgatccggcc gctgctgcgc gccaacgaca
      901 accgccgcta caacgtccac gtggtggttt tcttcatctt cctcgtctcg aacatcggcg
      961 gctccctcac accgcttggc gatccgccgc tgttcctcgg cttcctgcgc ggcgtcgact
     1021 tcttctggac gacgacgcac ctcttcgccg agaccctgtt cgccgccggc attgtcttcg
     1081 ccgtgttcct tgtcgtggat gccgtcctct accggcgcga gaccgacttc ctcccgccgg
     1141 tcgccgaccc gacgcccgat tcggcgctcg gggtgaaggg gctgcacaac cttgccctca
     1201 tcggcgtggt gatcgccgcg atcctgatga gcgcctactg gaagcccggc atcgccttcg
     1261 agatcggcgg cgcgcgcctc gagctgcaga acgtcctgcg cgacaccatc ttcgtcgcca
     1321 ccgcccttgc atcgtacgcg ctgacgtctc cgttcgaccg ggaggcgaac ggcttctcgt
     1381 ggggacccat caaggaggtc gccaagctct tcgccggcat cttcctgtgc atggtgccgg
     1441 tgctggccat gctgcgcgcc ggcctgcagg gcccgttcgc gccgctcgtc gcgctcgtca
     1501 gcaaccccga cgggagccct aacaacgccg cctatttctg gctcacgggc gggctctcct
     1561 cgttcctcga caacgccccg acctatctcg tgttcttcga gctcgccggg ggagacgccg
     1621 cacggctcat gaccacgggc gcgctgacgc ttgcggcgat ctcgtgcggc gcggtgttca
     1681 tgggcgcgaa ctcgtacatc ggcaacgcgc cgaacttcat ggtctacgcc atcgccaagg
     1741 acgccggcgt gcgcatgccg agcttcttcg gctacatggt gtggtcggcg gcggtcctga
     1801 tcccgacctt cctgctcacc accttcgtgt tcttccgctg acgcggatcc gtccgaagcg
     1861 atcggccgca ggctgatgga cggctagctc tcgatcttct cggcgacctc gtcggcgagc
     1921 gagagagaag cggtgagccc cgggctctcg atcccgaaca gcgccacgtg gcgctcgagc
     1981 ccgtgctccg ccggaccttc gatcatgaag tccgccggcg gctcgccggg gccggtgagc
     2041 ttcggccgga tgccggagta gtcgggcacc agggcatcgt cgggcaggcc cggccagtag
     2101 cgccggatcg aggcatagaa ggaggccacg cgcgtagggt cgacctcgta gacctcctct
     2161 tcgatccact cgacatccgg gccgaagcgc atgcggccgg cgaggtcgag ggtgacgtgc
     2221 gtgccgaggc cgccgtccac gggcgagggg tagatgagcc gcgtgaaggc cgggcggccg
     2281 acgcagccga aatagttgcc cttggcgtag acgagcttcg ggatgcgctc ggccgggtag
     2341 ccctcggtcg tccgcgccag cgcctgggcg ccgagcgccg ccgcgttgac gacggcgtcg
     2401 aaggggatct cgccggcgtc gtccgacaga gtcgcgtgcc attggccggc gcgccgcgcc
     2461 aggcgctcga ccccggtgtc gaaggcaagc gccccgccgg cgtcctcgag gtcgccctgg
     2521 agcgccagca tgaacgcgtg gctgtcgacg attccggtct gcggcgacgc caccgcggcg
     2581 gtggcgaaga ggttcggctc gagcgcccgc gcagcgtctc cgtcgatgag cttcagatcc
     2641 tcaacgccgt tcgtcacgcc ttgctgatgg atgccctcga tcattgcttc ttcgagcgcg
     2701 ttcgtcgcca cgatgagctt accgcagcgc cggtagggca cgccgtggct gtcgcagaag
     2761 gcatagagcc gccgccggcc ctcgacgcag tgacgggccc gcacggagcc ggcggggtaa
     2821 tacatgccgg catggatcac ctcgctgttg cgcgacgaga cgccgttgcc gatccccgag
     2881 gtgcgctcgg cgacgatgac ggagtgtccg cgcagggcca gcgcccgggc acacgcgaga
     2941 ccgaccacgc cggctccgac gacgaggacg tccatcagcg ccggcccgcc tttgcggcga
     3001 cgaagcgggg gcgcggcagg gcggtgcggc agtcgctcat ggtcatcccc ggagcatcag
     3061 aacgccaagg cccggatgcc gcggcgtggc ctgcaaggca agcctctaac gaaccccacg
     3121 cactgcggag acgcaggatc gactcgcc
//
LOCUS       DASQWN010000667         2229 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_986801, whole genome shotgun sequence.
ACCESSION   DASQWN010000667 DASQWN010000000
VERSION     DASQWN010000667.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2229)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2229)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2229
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_986801"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(191..838)
                     /locus_tag="VE686_12525"
     CDS             complement(191..838)
                     /locus_tag="VE686_12525"
                     /inference="COORDINATES: protein motif:HMM:NF012976.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protocatechuate 3,4-dioxygenase"
                     /protein_id="HYY85311.1"
                     /translation="MLVATPALGRRRFVLAGAAALGGLVVPGRLRAQPLVRTPAQTEG
                     PFYPVQFPADVDNDLVVVRGAEARAAGVVTHVVGRVLGTDGAPVANATVEIWQCDANG
                     RYLHPADRGGKARDSAFQGYGRTTSAADGTYRFRTIRPVAYSGRTPHIHFAVKAPQGR
                     ELVTQMYVAGEPLNGRDGVYAGIRDPRQREAVTVALAPANGVESGALVGTFDIVL"
     gene            complement(934..1620)
                     /gene="purQ"
                     /locus_tag="VE686_12530"
     CDS             complement(934..1620)
                     /gene="purQ"
                     /locus_tag="VE686_12530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018262806.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004642 -
                     phosphoribosylformylglycinamidine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0006189 - 'de novo' IMP biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine synthase
                     subunit PurQ"
                     /protein_id="HYY85312.1"
                     /translation="MKAAVIVFPGSNREGDVVRALKRAGAHVEKVWHADTELPGGTDL
                     AVLPGGFSYGDYLRCGAIAGRAAVMDAVRAHAARGGLVLGICNGFQILCESGLLPGVL
                     VRNANLKFICHFQHLRVERADTAFTTAYRDGQAIRVCVAHGEGNYFADQETLSRLEGE
                     GRIAFRYCDPAGEITTDANRNGSLNAIAGIYSEKLNVLGLMPHPENLIDDLVGGTDGR
                     ALFESLVAAA"
     gene            complement(1655..1894)
                     /gene="purS"
                     /locus_tag="VE686_12535"
     CDS             complement(1655..1894)
                     /gene="purS"
                     /locus_tag="VE686_12535"
                     /EC_number="6.3.5.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015667911.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine synthase
                     subunit PurS"
                     /protein_id="HYY85313.1"
                     /translation="MKARVTVTLKAGVLDPQGKAIEGALKSLGVEGIASVRQGKVFDV
                     ELDSADAGRAEAALKQACEKLLANTVIENYRVELG"
BASE COUNT          343 a          775 c          784 g          327 t
ORIGIN      
        1 ttgtggggac cttcgacatc gtcctctgac gcctggccct gcccgaaggc cggcgcagcg
       61 aagcacgcca ggaccgaggc gacggcaaga cgggcgcgag cacgggacat cgagaccctc
      121 cactgaacca cgaacgcgca agcagcgaat cgggtccggc gcaccgccgc gcctcgcgca
      181 gggcgaggcg tcagaggacg atgtcgaagg tccccacaag cgccccgctc tcgaccccgt
      241 tcgccggggc aagggccacc gtgaccgcct cgcgctgccg cggatcgcgg atgccggcgt
      301 agacgccgtc ccgcccgttg aggggctcgc cggccacgta catctgcgtc acgagctccc
      361 gcccctgcgg cgccttcacg gcgaagtgga tgtgcggggt ccgccccgag taggccacgg
      421 gccggatagt gcggaagcgg tatgtgccgt cggcggccga tgtcgtccgg ccgtagccct
      481 ggaaggcgct gtcgcgggct ttgccgcccc ggtcggccgg gtgcaggtag cggccgttgg
      541 cgtcgcactg ccagatctcg acggtggcgt tggcgaccgg cgccccgtcg gtcccgagca
      601 cccgccccac cacatgcgtt accacgccgg ccgcgcgcgc ctccgctccg cgcaccacga
      661 cgaggtcgtt gtcgacgtcc gccgggaact gcaccggata gaacgggccc tccgtctgcg
      721 ccggcgtcct gacgaggggc tgcgcgcgaa ggcggcccgg gaccacgagg cctccgagcg
      781 cggccgcgcc ggcgaggacg aacctgcgcc ggccgagggc gggtgtggcg acgagcatgg
      841 cgatcctccc ccggacgagc gcggacggcc gagcgtacgc cgcgcccgcc gccgcggcag
      901 catcacgttg acgagaggcc ttgcgtggcg cgtctaggcc gcggcgacaa ggctctcgaa
      961 cagggcccgg ccgtccgtgc cgccgacgag atcgtcgatg agattttccg ggtgcggcat
     1021 gaggccgagc acgttcagct tctcggagta gatgcccgcg atggcgttca gcgatccgtt
     1081 gcggttcgcg tccgtggtga tctcgccggc agggtcgcag tagcggaagg cgatgcgccc
     1141 ctcgccctcg aggcgggaga gggtttcctg gtcggcgaag tagttgccct cgccgtgcgc
     1201 cacacagacg cggatggcct gcccgtcgcg ataagccgtc gtgaacgcgg tgtcggcccg
     1261 ctcgactcgc agatgctgga agtggcagat gaacttgagg ttcgcatttc gcacgagcac
     1321 gccgggcaga aggcccgact cacacaggat ctgaaatccg ttgcagatgc cgagcacgag
     1381 cccgccgcgg gcggcgtgcg cgcgcaccgc gtccatgacc gccgcccggc ccgcgatcgc
     1441 gccgcagcgc agataatcgc cgtacgagaa gcccccgggc aggaccgcaa gatcggtgcc
     1501 gcccgggagc tcggtgtctg cgtgccagac cttctcgaca tgcgccccgg cgcgcttcag
     1561 cgcacgcacc acgtcgccct cgcggttcga gcctgggaaa acaatgacgg cggctttcat
     1621 cacggcacct cttgagcgag cgcgggggcg gccctcagcc gagctcgacg cggtagttct
     1681 cgatgacggt gttggcgagg agcttctcgc atgcctgctt gagcgcggcc tcggcgcgac
     1741 ccgcgtcggc gctgtcgagt tcgacgtcga agactttgcc ctggcgcacg ctcgcgattc
     1801 cctcgacccc gagggatttc agcgcgccct cgatggcctt gccctgggga tcgaggacgc
     1861 cggccttgag agtgacggtc acgcgggctt tcatggggcg tcgcctcgtg tcgggtcgcg
     1921 ggttggctcg acgggcaata agcgcaagcg accccgggca caacactgcg acgcaggcgt
     1981 gcccctcgcg gtggacgcgg gctgaacgcc gagctccttc ttctaacgac acggaaccgt
     2041 gtcatatcgc tcgcgttttg ccagggccta gaaatggagg aatccctatg aagcagtatt
     2101 taatcggtgc cgcccttctg gcgcttgctg gccccgcggt ggcgcagacg agcaccacca
     2161 cgacgacgac gagcagcggc gactcgttct atgtggtgca ggagccctcg acgaagaagt
     2221 gcaccatca
//
LOCUS       DASQWN010000668         2032 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_168905, whole genome shotgun sequence.
ACCESSION   DASQWN010000668 DASQWN010000000
VERSION     DASQWN010000668.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2032)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2032)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2032
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_168905"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            321..1490
                     /locus_tag="VE686_12540"
     CDS             321..1490
                     /locus_tag="VE686_12540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009763118.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_function: GO:0016810 - hydrolase activity, acting on
                     carbon-nitrogen (but not peptide) bonds [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M20 aminoacylase family protein"
                     /protein_id="HYY85314.1"
                     /translation="MPVINRAADLQSEITAWRRDFHEHPELLYEVHRTAGIVSDKLKQ
                     FGCDEVVTGIGRTGVVAVIKGKTDKSGKVIGIRADMDALPIEEATGAPHQSKIRGAMH
                     ACGHDGHTAILLGAAKYLAETRNFDGTAVMIFQPAEEGGAGAEAMLKDGLLERFGVQE
                     VYGLHNMPGIPVGNFALRPGPLMAAADRFDIQIEGKGGHAARPHEGIDTLLVACQVVT
                     ALQSIVARNVNPLESAVVSVCSIQAGNTFNVIPQHARLLGTVRTLTDEVRDLCETRIR
                     AVVESVCAAYGATVKIEYNRGYPVTRNHPEQADFLARIAAQVGGEGAVDADITPLMGA
                     EDFSYMLEQRPGAYIFLGDGATAGVHHPAYDFNDEAIPYGVSLWAKVVETAMPAR"
     gene            complement(1558..>2032)
                     /locus_tag="VE686_12545"
     CDS             complement(1558..>2032)
                     /locus_tag="VE686_12545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002717111.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0015129 - lactate transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0015727 - lactate transport [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="L-lactate permease"
                     /protein_id="HYY85315.1"
                     /translation="YFETLWVVRYSLLTIVAMLAIGVLTRYSGLDATLGLAFAGTGVL
                     YPFFGTLLGWLGVALTGSDTASNVLFGNLQKITSEQLGLSPILMGAANSSGGVMGKMI
                     DAQSIVVASTATNWFGHEGTILRFVFWHSIALACLVGVLVMLQAYVYPFTAMVLQ"
BASE COUNT          352 a          699 c          684 g          297 t
ORIGIN      
        1 cggctctgcg gtcacggcga gtgccgccgc cgcggcagca gccaggaggg cgttacgtat
       61 cgacatgagc gttcatctcc cttggggggt tcgggccgcg gctgcgccaa gcgtccccct
      121 ctgcggccga cactagcgac gcccgttacg cgcggctagc cccgcgagtg gcgcttcgac
      181 ggggctccgc gccgccggcg gctcgcccga acgtgtttgc tgaacgcgag cccgcccggt
      241 tgccctcgcg gtcccggtct gattgtaagg cgagcaaggg cgccctcgcg cgtccaggag
      301 ttcacttccg agaggatgtc atgcccgtca tcaaccgagc cgccgatctc cagagcgaga
      361 tcaccgcgtg gcgccgagac ttccacgagc acccggagct tctctatgag gtgcaccgca
      421 cagccggcat cgtctccgac aagctgaagc agttcggctg cgacgaggtg gtcaccggca
      481 tcggccgcac gggcgtcgtc gcggtgatca agggcaagac cgacaaatcc ggcaaggtca
      541 tcggcatccg ggccgacatg gacgccctgc ccatcgagga ggcgaccggc gcgccccacc
      601 agtccaagat ccgcggtgcg atgcacgcct gcggccatga tgggcacacg gcgatcctgc
      661 tcggtgccgc gaagtatctc gccgaaacgc gcaacttcga cggcacggcg gtgatgatct
      721 tccagccggc ggaagaaggg ggcgcggggg cggaagccat gctcaaggac ggcctcctgg
      781 agcgctttgg ggtgcaggag gtctacgggc tgcacaacat gccgggtatt cccgtcggca
      841 acttcgccct tcgtccgggc ccgctcatgg cggcggccga ccgcttcgac atccagatcg
      901 aggggaaggg cggccacgcc gcccggccgc atgaaggcat cgacacgctt ctggtcgcct
      961 gccaggtggt cacggcgctg cagtcgatcg tcgcccgcaa cgtcaatccc ctcgagtcgg
     1021 cggtggtctc cgtctgctcg atccaggccg gaaatacgtt caacgtgatc ccgcagcacg
     1081 cccggctgct cggaaccgtc cgtacgctga cggacgaggt gcgggacctg tgcgagacgc
     1141 gcatccgggc cgtcgtggag tccgtgtgcg ccgcctacgg cgccaccgtg aagatcgagt
     1201 acaaccgggg ctacccggtc acccgcaacc acccggagca ggccgacttt cttgcgcgga
     1261 tcgccgccca ggtcggcggc gagggggcgg ttgacgccga catcaccccg ctcatgggag
     1321 cggaggactt ctcctacatg ctcgagcagc ggcccggcgc ctacatcttc ctcggcgacg
     1381 gcgccacggc aggcgtccac cacccggcgt acgacttcaa cgacgaggcc atcccgtacg
     1441 gcgtctcgct ctgggccaag gtcgtcgaga ccgccatgcc ggcacgctga cgcggccctt
     1501 cactgaaacg aaatgggcgc ccgagggcgc ccttttcatt ggcgaaccgc gcaggctcta
     1561 ctgcagcacc atggcggtga aggggtagac gtaggcctgc agcatcacga ggacgccgac
     1621 gaggcaggcg agcgcgatcg agtgccagaa cacgaagcgc aggatcgtgc cttcgtgacc
     1681 gaaccagttc gtggccgtgg acgccacgac gatcgactgc gcgtcgatca tcttgcccat
     1741 gacgccgccg gacgagttcg ccgctcccat gaggatcggc gacagcccga gctgttccga
     1801 cgtgatcttc tgaaggttgc cgaagagcac gttcgaggcg gtgtccgagc cggttagcgc
     1861 cacgccgagc caccccagca gcgtgccgaa gaacgggtac agcactcccg tcccggcgaa
     1921 ggcgaggccg agcgtcgcgt cgaggcccga gtagcgggtc aggacgccga tcgccagcat
     1981 ggccacgatg gtgagcagcg aatagcgcac cacccagagc gtctcgaaat ag
//
LOCUS       DASQWN010000669         3614 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_888878, whole genome shotgun sequence.
ACCESSION   DASQWN010000669 DASQWN010000000
VERSION     DASQWN010000669.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 3614)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3614)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3614
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_888878"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..978
                     /locus_tag="VE686_12550"
     CDS             <1..978
                     /locus_tag="VE686_12550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009763967.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PHB depolymerase family esterase"
                     /protein_id="HYY85316.1"
                     /translation="CTQTAAGYDHGTGWSTLADEHGFVLLYPEQQAANNPKTCFNWFE
                     PGDIRRDAGEAKSIRQMIDWTIAEHGVDRSRVYVTGLSAGGAMAGVMLATYPEVFAGG
                     AIIAGLPYGTAGNVQDALSSMFQGRTKDARQWGDLVRAASPHRGPWPRVSVWHGGADT
                     TVKPTNATEIVKQWNDVHGVSGTPALESNGPGFTRQVWRDGAGEEVVESFTLAGMAHG
                     TPLAAGVGEGKSGVAGPFLLDVGVSSTHHIARFFGLVPQAGVAREAAPVWPPTGVIEF
                     APKADEAPLRRAEPAPKADRHGSRKAGGLPVDVNAVITKALKAAGLMRS"
     gene            1044..2222
                     /locus_tag="VE686_12555"
     CDS             1044..2222
                     /locus_tag="VE686_12555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019198917.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3095 domain-containing protein"
                     /protein_id="HYY85317.1"
                     /translation="MTERTNQTGSGEAFAGDRFYERLPVFDRFDRLTDPAIYTPLPDH
                     WVLGLSDIVRSTAAIDAGRYKVVNTAAASVIAAVSNGLPETDFPFVFGGDGASFALPR
                     GHADLGSTALAAVAAWVRDELDLEMRVSLVPIQTIRAAGLDVRVARFAPSPDVSYAMF
                     TGGGLAWAEERMKEGAFAIPSAAAGTRPDLTGLSCRFAEIPAERGVIVSLIVLPKPGA
                     APAAFSDLVARILKLAEGVEVGRPIPASGPALQWPPAGLGIEASALPLSRMSRTAAQL
                     LVGAKTLAAHVMFKTGVRLGGFDPARYRRQLVENSDFRKFDDGLRMTLDCTPALADEF
                     EALLAGAEKSGVARCGMHRQGAALMTCFVPSPTRSDHVHFIDGAMGGYAAAARAVKVA
                     "
     gene            complement(2246..>3614)
                     /locus_tag="VE686_12560"
     CDS             complement(2246..>3614)
                     /locus_tag="VE686_12560"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY85318.1"
                     /translation="APGTSPIERVGQTASDVADRARDAGERARDMAVDAGAAVSDIAS
                     RAAGAASDAADRARTTAADIGGRAASAASDAAGWAQETASNVTDRASAIASDARDRAG
                     SILSGARDQAGSMVSGVRDQAGSMMSGITGSGSSSGGPVPQQPRWTPHDTRSSSVGNV
                     GESVRHGAASIAEMAQRNTVALGVIGIVAGAILGRSLRSTRAADRFASSAGDTWSRSS
                     RRVGSGMRGASEYARLRAERLYEDGSDAARETWDTASDAGSSATSAVSDAASGVAGRA
                     SDLASGVADTVTRVAETAGEALSSATSGVSRATSSAYRTASRQAAYAGRRAARMTDGL
                     PGEVANLARSYPLLFGTVGLALGAALGGSMRLSESERRVMAPAGEALRERARELAEQQ
                     LGNVAEMAERLGDTLQARVASVNERDGVPIGDSDPAVVVGGRPRAPGESGDALPPSPP
                     AGGIG"
BASE COUNT          499 a         1311 c         1287 g          517 t
ORIGIN      
        1 tgcacccaga cggcggcggg ctacgaccat ggcaccggct ggtcgacgct cgccgacgag
       61 cacggatttg ttctgctcta tccggagcag caggccgcca acaatcccaa gacctgcttc
      121 aactggttcg agcccggcga catccggcgc gacgccggcg aggccaagtc gatccggcag
      181 atgatcgact ggacgatcgc cgagcacggc gtcgatcgca gccgcgtgta cgtcaccggc
      241 ctctcggcgg gcggcgccat ggccggcgtc atgctggcga cgtaccccga agtcttcgcg
      301 ggcggcgcca tcatcgcggg acttccctac ggcacggccg gcaacgtgca ggacgcgctc
      361 tcgagcatgt tccagggccg caccaaggac gcgcggcagt ggggcgatct cgtccgcgcg
      421 gcctcgcccc atcgcgggcc gtggcccagg gtctcggtct ggcacggcgg cgccgacacg
      481 accgtcaagc ccacgaacgc gaccgagatc gtcaagcagt ggaacgacgt gcacggcgtg
      541 tcgggcacgc ccgctctcga gagcaacggc ccgggtttca cgcggcaggt ctggcgcgac
      601 ggcgcaggcg aagaagtcgt ggagtcgttc actctcgctg gaatggcgca cgggacgccg
      661 ctggcggccg gcgtcggcga gggcaagtcc ggcgtcgccg gacccttcct cctcgacgtc
      721 ggggtgtcgt ccacgcacca catcgcgcgg ttctttggcc tggtgccgca ggccggggtc
      781 gcacgtgagg ctgcacccgt gtggccgccc accggcgtca tcgagttcgc ccccaaggcg
      841 gatgaggcgc cactccggag agccgaaccc gcgccgaagg ccgatcggca cggcagccgc
      901 aaggccggcg gcctcccggt cgacgtcaac gcggtgatca ccaaggcgct gaaggcggcc
      961 ggcctgatgc gatcctgaag gcgccggggc cggcggcgtc gccggccccg atcgcccggt
     1021 cgcccatgct acactcggga tcaatgacgg agcggacgaa ccagacgggc tcgggcgagg
     1081 ccttcgcagg cgacaggttc tacgagcggc tgcccgtctt cgaccgcttc gatcggctca
     1141 ccgatcccgc catctacacg ccgcttcccg accactgggt gctcgggctt tccgacattg
     1201 tgcgctcgac cgcggccatc gacgcgggcc gttacaaggt cgtcaacacg gcagcagcgt
     1261 cggtgatcgc cgccgtgtcg aacggcctcc ccgaaaccga tttcccgttc gtcttcggcg
     1321 gcgacggcgc gagcttcgcc cttccccgcg gccatgcgga tctcggctcc acggcgcttg
     1381 ccgccgtcgc cgcctgggtc cgggacgagc tcgacctcga gatgcgcgtt tcgctggtgc
     1441 ccatccagac gatccgcgcg gcggggctgg atgtccgcgt tgcgcgattc gcgccctctc
     1501 ccgacgtgtc ctacgccatg ttcaccggtg gaggtcttgc gtgggcggag gagcggatga
     1561 aggagggggc gttcgcgatc ccgagtgccg cggccggtac gcggcccgac ctgacgggct
     1621 tgtcgtgccg ctttgccgaa atccctgccg agcgcggggt catcgtctcg cttatcgtcc
     1681 tgccgaagcc cggcgcggct cccgcggcct tctccgatct cgtggcccgc atcctcaagc
     1741 ttgccgaagg cgtcgaggtc ggccgaccga ttccggcgtc tggcccggcg ttgcaatggc
     1801 cgccggcggg cctcggtatc gaggccagcg ccctgcccct gagccggatg tcgcgcaccg
     1861 ccgcgcagct tctcgtcggc gccaagaccc ttgcggcgca cgtgatgttc aagacgggcg
     1921 tgcggctcgg tggcttcgac ccggcgcgct accggcgtca gctcgtagag aattcggact
     1981 tccgcaagtt cgacgacggc ctgcggatga ccctcgactg cacgccggca ttggccgacg
     2041 agtttgaggc gctgctggca ggggccgaga aaagcggcgt cgcgcgctgc gggatgcacc
     2101 ggcagggcgc tgcgctgatg acctgcttcg tgccctcgcc gacgcggagc gaccacgtcc
     2161 acttcatcga cggcgccatg ggcggctacg ccgccgcggc gcgcgccgtg aaggtcgcct
     2221 gagccatccg gctcaggggg tcgggtcagc cgatcccgcc agcgggcggc gatggcggca
     2281 gggcatcacc cgactcgcct ggagcacgcg gccgcccgcc tacgacgacg gcaggatccg
     2341 agtcgccgat cggcaccccg tcccgctcgt tcacgctggc gacgcgcgcc tgcaaggtgt
     2401 cgccaagacg ctcggccatc tcggcgacgt tgccgagttg ctgctccgcg agctcgcggg
     2461 cccgctcccg gagcgcctcg ccggccgggg ccatgacgcg tcgctcgctc tcgctcaggc
     2521 gcatcgatcc gccgagcgcg gcaccgagcg ccaagccgac ggtgccgaag agcaacgggt
     2581 agctccgcgc gaggttggca acctcgccag ggagcccatc ggtcatccgg gcagcacggc
     2641 gtccggcgta cgccgcctgt cgcgacgcgg tccggtaagc ggaggaggtc gcgcgagaca
     2701 cgcctgaggt cgcggaagaa agcgcttctc ccgcggtctc tgcgacacgg gtcaccgtgt
     2761 cggcgacgcc cgaagcaagg tcgctggccc ggccggcgac gccgctcgcc gcgtccgaca
     2821 ccgcggacgt tgccgacgac ccggcatcac ttgccgtgtc ccaggtctcg cgggccgcgt
     2881 cgctgccgtc ctcgtacagg cgttccgccc taagacgggc atattcggaa gcgccgcgca
     2941 tcccggagcc aacccggcgc gagcttcgcg accaggtatc tccggcgctg gaggcgaagc
     3001 ggtcggccgc gcgggtggag cgcagcgacc ggccgaggat cgcgcccgca acgatgccga
     3061 tcacgccgag cgcgacggtg ttgcgctgag ccatctcggc gatcgacgct gctccgtgcc
     3121 gcacgctctc gccgacgttg ccgacactag aggagcgcgt gtcgtgaggg gtccagcgcg
     3181 gctgctgggg caccggccct ccgctggacg agcccgagcc cgtgatgccg gacatcatgg
     3241 acccggcctg atcgcggacg ccggagacca tcgagccggc ctggtcgcgg gcaccagaga
     3301 gtatcgagcc ggcccggtcg cgagcgtcgg atgcgatcgc gctggcgcgg tcggtcacgt
     3361 tggaagccgt ctcctgcgcc caaccggcag catcggacgc ggccgaggct gcccgccccc
     3421 cgatgtcggc ggctgtcgtg cgtgcgcggt cggcggcgtc ggaggcggcg cccgcggcgc
     3481 ggctcgcgat gtcagaaacg gcagcgcctg catcaacggc catgtcacgg gccctctcgc
     3541 ccgcatcgcg agcgcggtcg gcgacgtcgg aggcggtctg cccgacccgt tcgatcgggc
     3601 tggtgccggg cgcg
//
LOCUS       DASQWN010000670         3189 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_565800, whole genome shotgun sequence.
ACCESSION   DASQWN010000670 DASQWN010000000
VERSION     DASQWN010000670.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 3189)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3189)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3189
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_565800"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..220)
                     /locus_tag="VE686_12565"
     CDS             complement(<1..220)
                     /locus_tag="VE686_12565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012453731.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transglycosylase SLT domain-containing protein"
                     /protein_id="HYY85319.1"
                     /translation="MLVTPAALAQEAPGGAAPKSETVEEAMCRLIDGAARARNLPSAF
                     LTRLIWRESSFRSGVVSHAGAQGVAQFMP"
     gene            complement(268..837)
                     /locus_tag="VE686_12570"
     CDS             complement(268..837)
                     /locus_tag="VE686_12570"
                     /EC_number="2.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012331736.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042834 - peptidoglycan binding [Evidence
                     IEA];
                     GO_function: GO:0071972 - peptidoglycan L,D-transpeptidase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="L,D-transpeptidase"
                     /protein_id="HYY85320.1"
                     /translation="MPRLALTPILLVLLAVLCGPASAGVLVTVDKSAQRMTVAVDGTT
                     RYSWPVSTGTRGYETPTGAFRPFRMEEDHYSREWDEAPMPHSIFFTSSGHAIHGSTAV
                     RRLGSPASHGCVRLAPGNAAKLFALVRAEGMNSTKVVVTGTERSAVARRAAPTVRQVR
                     AAPRPAYETRRRPQTYEDASIPGDTDDWW"
     gene            complement(918..2297)
                     /locus_tag="VE686_12575"
     CDS             complement(918..2297)
                     /locus_tag="VE686_12575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003526052.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M20 family metallopeptidase"
                     /protein_id="HYY85321.1"
                     /translation="MTRDAAIGRATEHFDSGRFREVLARRVAMPTESQNPERAPVLRE
                     YLEGEMRPALEALGFTCRILEQGKWPFLFAERHENPSLPTVFGYGHGDVIRGLDDEWH
                     EGLSPWILAERGDRWYGRGVVDNKGQHAINIAALQAVLETRGRLGFNAKYLIEMGEET
                     GSPGLRQLCTEHKELFRSDVLIGSDGPRLTAERPTIFLGTRGGLNFDIWIDAREGGHH
                     SGNWGGLLSDPATQLAHAIASIVGPSGQIRIPEWVPESVPDNVRRVLADVEIEGEEGG
                     PVTDPTWGEPGLTQPEKVFAWSSFAVLAYEAGNPKTPVNAIPPRAWARCQLRFPVGVD
                     WREILPSLRRHLDRHGFPMVQIKQARDEVFHATRLDPDNPWVRLAVESLAKSTNKKPA
                     ILPNLGGSLPNDIFADILELPTVWVPHSYPACSQHAPNEHVPVAIVREALALMAGLYW
                     DIGVRGRPE"
     gene            complement(2328..>3189)
                     /locus_tag="VE686_12580"
     CDS             complement(2328..>3189)
                     /locus_tag="VE686_12580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009025489.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009898 - cytoplasmic side of plasma
                     membrane [Evidence IEA];
                     GO_component: GO:0043190 - ATP-binding cassette (ABC)
                     transporter complex [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0015440 - ABC-type peptide transporter
                     activity [Evidence IEA];
                     GO_process: GO:0015833 - peptide transport [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="oligopeptide/dipeptide ABC transporter
                     ATP-binding protein"
                     /protein_id="HYY85322.1"
                     /translation="GEVLGIVGESGCGKSTLARILLGLLPPTRGTVALDGRDIRELGR
                     REMARRVQPVFQDPYSSLNPRRTVASIVALPLAVHGIGSSAERRRSALEMLERVGLPA
                     RFADRYPRELSGGQRQRVAIARALVMRPEIVVCDEPTSALDVSVQSQILNLLLDLQRE
                     LGLTYVFISHNLAVVEHIATRVAVMYLGQVVELSETAALFRDPRHPYTRALLASVLTP
                     EPGLGIPDTGLGLAFPDPLNPPPGCPFHPRCPDAISVCRVEMPPLVDTGHGVAACHVH
                     APPPAGARAA"
BASE COUNT          476 a         1080 c         1180 g          453 t
ORIGIN      
        1 cgggcatgaa ctgcgcaacg ccctgcgcgc cggcgtggct gaccacgcca gagcggaagc
       61 tgctctcccg ccagatcaag cgcgtcagaa aagctgacgg cagattgcgc gcccgcgccg
      121 cgccgtcaat gaggcggcac atggcttcct cgaccgtctc cgacttcggc gcggccccgc
      181 ccggcgcctc ttgcgccaga gcggcgggcg tcacgagcac gagcacacta gcgagcgcgc
      241 gcgcgcgcca gtgcccgacg gcgcccctca ccaccagtcg tcggtgtcgc cggggatgct
      301 tgcgtcctcg tacgtctggg gccgacgccg ggtctcgtac gcaggccggg gcgcggcgcg
      361 gacctgcctg accgtagggg ctgcacggcg cgcaaccgcg ctgcgctccg tccccgtcac
      421 gaccaccttg gtgctgttca tgccctcggc acgcacgagc gcgaacagct tcgcggcgtt
      481 gccgggcgcg agccggacgc atccgtggga tgctggagag ccgagcctgc ggacggcggt
      541 gctgccgtgg atggcatggc ccgaactcgt gaagaagatc gaatgcggca tcggcgcctc
      601 atcccactcc cgcgagtagt ggtcctcctc catgcggaac ggacggaacg cgcccgtcgg
      661 cgtctcgtag cctctcgtgc cggtcgacac cggccaggag taccgcgtcg tgccgtcgac
      721 cgcgaccgtc atgcgttgcg cgctcttgtc caccgtgacc aggacgcccg cgcttgcggg
      781 cccgcaaagg acggcgagaa ggacgaggag aatgggcgtg agcgccagcc taggcattag
      841 ggcagctcgt cagggtcgcg aaggtccttc acttacgccg caaacgccgt tgtgttcccg
      901 cccgaggcgg cgtcgcctca ctcgggcctg ccgcgcacgc cgatgtccca gtacaggccc
      961 gccatgagcg cgagggcctc gcggacgatg gcgacgggca catgctcgtt cggggcatgc
     1021 tgcgagcacg ccgggtagga atggggcacc cacaccgtcg ggagctcgag gatgtcggcg
     1081 aagatgtcgt tgggcaggga gccgccgagg ttcggcagga tcgccggctt cttgttggtg
     1141 ctcttcgcaa gcgactcgac ggccaagcgg acccaggggt tgtcgggatc gagccgcgtg
     1201 gcgtggaaga cctcgtcgcg ggcctgcttg atctgcacca tcgggaagcc gtgccggtcg
     1261 aggtggcgcc gcagggacgg caggatctcg cgccagtcga cgccgacggg gaagcgcagc
     1321 tggcatcggg cccaggcccg cggcgggatc gcgttgaccg gagtcttggg gttgccggcc
     1381 tcgtaggcga gcaccgcgaa ggagctccag gcgaagacct tctcgggctg ggtcaggccc
     1441 ggctcgcccc aggtcgggtc ggtgacaggc ccaccctcct cgccctcgat ctcgacatcg
     1501 gccaggaccc gtcggacgtt gtcgggaacg ctctccggca cccactcggg aatgcggatc
     1561 tgaccgctcg ggccgacgat cgacgcaatg gcgtgcgcca gctgcgtcgc ggggtcggac
     1621 agaagcccgc cccagttgcc ggaatggtgg ccgccctcgc gggcgtcgat ccagatgtcg
     1681 aagttgaggc cgccgcgcgt gccgaggaag atggtggggc gctcggcggt gagccgcggg
     1741 ccgtcggagc cgatgagtac gtcggagcgg aacagctcct tgtgctccgt gcagagctgt
     1801 cgcaaccccg gcgagcctgt ctcctcgccc atctcgatga ggtatttggc gttgaagccg
     1861 agccgaccgc gggtctcgag caccgcctgc agggcggcga tgttgatggc gtgctgaccc
     1921 ttgttgtcga caacgccgcg tccgtaccag cggtcgccgc gctcggcgag gatccagggc
     1981 gagagcccct cgtgccactc gtcgtcgagg ccgcggatca cgtcgccgtg gccgtagccg
     2041 aacacggtcg ggagtgaggg gttctcatgc cgctcggcga agaggaacgg ccattttccc
     2101 tgttccagga tgcggcaggt gaagccgagc gcctcgagcg ccgggcgcat ctccccctcg
     2161 agatattcgc gcaggaccgg cgcccgctcg gggttctggc tctcggtcgg catggcgacg
     2221 cggcgggcca agacctccct gaagcgtccg ctgtcgaagt gctcggtcgc gcggccgata
     2281 gcggcgtctc gggtcatgcg tctcagctcc ggcagatggg aggcggctca cgccgccctg
     2341 gcgcccgctg gcggcggcgc gtggacgtgg cacgccgcga cgccgtgccc cgtgtcgacg
     2401 aggggcggca tctcgacccg gcagacgctg atggcgtccg ggcagcgcgg gtggaaggga
     2461 cagccgggcg gcgggttcag cgggtccggg aaggcgaggc cgagccccgt atcggggatc
     2521 cccagacccg gctccggcgt cagcaccgag gcgagcagcg cccgcgtgta gggatggcgc
     2581 ggatcgcgga agagcgctgc cgtctctgag agctcgacca cctggccgag gtacataacc
     2641 gcgacgcggg tcgcgatgtg ctccaccacg gcgaggttgt ggctgatgaa gacgtaggtg
     2701 aggccgagct cgcgctgcag gtccaggagc agattgagga tttgcgactg cacggagacg
     2761 tcgagggccg acgtcggctc gtcgcagacg acgatctcgg gccgcatgac gagggcgcgc
     2821 gcgatggcga cgcgctgtcg ctggccgccc gagagctcgc gcggatagcg gtcggcgaac
     2881 cgcgccggca ggccgacgcg ctccagcatc tcgagcgcgc tgcgccgccg ctcggccgac
     2941 gagccgatac cgtggaccgc caagggaagg gccacgatcg acgcaacggt ccggcgcggg
     3001 tttagggacg agtacggatc ctggaacacc ggctgcacgc ggcgcgccat ctcgcgccgt
     3061 ccgagctcgc gaatgtcgcg gccatcgagc gcgacggtgc cgcgcgtcgg cggcaggagc
     3121 ccgagcagaa tgcgcgcgag agtagatttg ccgcagcccg actcgccgac gatgccgagc
     3181 acctcgccc
//
LOCUS       DASQWN010000671         3196 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_290391, whole genome shotgun sequence.
ACCESSION   DASQWN010000671 DASQWN010000000
VERSION     DASQWN010000671.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 3196)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3196)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3196
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_290391"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1243)
                     /gene="nuoG"
                     /locus_tag="VE686_12585"
     CDS             complement(<1..1243)
                     /gene="nuoG"
                     /locus_tag="VE686_12585"
                     /EC_number="7.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018428454.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050136 - NADH dehydrogenase (quinone)
                     activity [Evidence IEA];
                     GO_process: GO:0006120 - mitochondrial electron transport,
                     NADH to ubiquinone [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoG"
                     /protein_id="HYY85323.1"
                     /translation="MTKLVIDGTEVDVPPEYTLLQACEAAGAEIPRFCFHERLSIAGN
                     CRMCLVELKGAPKPVASCAWAVRDCRPGPNGEAPVVNTKTPVVKKAREGVMEFLLINH
                     PLDCPICDQGGECDLQDQAMAYGVDTSRYHENKRAVTDKYIGPLVKTSMNRCIQCTRC
                     IRFAAEVAGVPDLGALYRGEEMQITTYLEQAMGSELQANVADLCPVGALTHKPYSFSA
                     RPWELTKVESIDVMDAVGSAIRVDSRGREVMRILPRINEDVNEEWISDKTRHHADALV
                     RNRLDRPWVREKGKLKEASWSDALAIFAKRLKKAGSKVAAIAGDLLDAETMYAAKKLL
                     EGQGSSLIEGRQTGLTYDCTSLSAVAFNSAIAGIEEADVAADDQHAVGRLDPRERRIE
                     VDRGQARAVVGKAGLPPLEQTG"
     gene            complement(1240..1569)
                     /locus_tag="VE686_12590"
     CDS             complement(1240..1569)
                     /locus_tag="VE686_12590"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY85324.1"
                     /translation="MRMAPIPLATAAVVLAATAAQARTCTVEVEDLQQIKAGAMALVA
                     QNVTVDGDKAARAERKIRQALQGGGPISIDPNEFKGAVRMKGTPSKAAVRDLVARVQK
                     IIETCKL"
     gene            complement(1574..2875)
                     /gene="nuoF"
                     /locus_tag="VE686_12595"
     CDS             complement(1574..2875)
                     /gene="nuoF"
                     /locus_tag="VE686_12595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010686013.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008137 - NADH dehydrogenase (ubiquinone)
                     activity [Evidence IEA];
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoF"
                     /protein_id="HYY85325.1"
                     /translation="MLNDRDRIFTNLYGFHSPGLQAAQMRGAWDGTKFLIEKGRDWIV
                     AEMKESGLRGRGGAGFPTGLKWSFMPKQSDGRPSYLVVNADESEPGTCKDREIMRHDP
                     HLLIEGCLIASFAMGANAAYIYIRGEYIAERIALQRAVDEAYEANLIGKDNVHGWPFD
                     LYVHHGAGAYICGEETALLESLEGKKGMPRLKPPFPANMGLYGCPTTVNNVESIAVAP
                     TILRRGGGWFSGLGKPNNTGTKLFCISGHVNKPCNVEEEMGISFRELIDKHCGGMRGG
                     WDNLLCSIPGGSSVPLVPAEQIIDASMDFDTLRNLKSGLGTAAVIVLDRSTDIVRAIA
                     RISYFYKHESCGQCTPCREGTGWMWRVLSRMAEGRSSRREIDMLLEVTTQIEGHTICA
                     LGDAAAWPIQGLIRHYRSEIEARIDQYAANPHPEPVRIAAE"
     gene            complement(2922..>3196)
                     /locus_tag="VE686_12600"
     CDS             complement(2922..>3196)
                     /locus_tag="VE686_12600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012334125.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoE"
                     /protein_id="HYY85326.1"
                     /translation="EGRRDAGAPDRATTVAPRTDEAPKGTPQSEKSYTPTPSKPAEGR
                     PVADDKGSTPVSGTPVSDAPARRDGSDSKPDVRVDKSPSPDSTGKA"
BASE COUNT          450 a         1083 c         1092 g          571 t
ORIGIN      
        1 ctccagtttg ctcgaggggc ggcagaccgg ccttgcctac gactgctcga gcctggccgc
       61 ggtcaacttc aattcgacgc tcgcggggat cgagacggcc gactgcgtgc tgatcgtcgg
      121 cagccacgtc cgcttcctcg atgccggcga tggccgagtt gaacgcgacc gcgcttaggc
      181 tcgtgcaatc gtaggtcagg ccggtctgcc gcccctcgat caggctgctc ccctgcccct
      241 cgagcagctt cttcgccgcg tacatggtct cggcatcgag caggtctccg gcgatcgcgg
      301 cgaccttgct gcccgccttc tttagccgct tggcaaagat cgcgagcgcg tcggaccagc
      361 tcgcttcctt gagcttgccc ttctcgcgca cccacggccg gtcgagccgg ttgcggacca
      421 gcgcgtcggc gtggtgccgc gtcttgtcgg aaatccactc ctcgttcacg tcctcgttga
      481 tgcgcgggag gatgcgcatc acctcgcggc cgcggctgtc gacgcggatg gccgagccga
      541 cggcgtccat cacatcgatg gattcgacct tggtcagctc ccaaggcctc gcgctgaagg
      601 aatacggctt gtgggtcagc gcgccgacgg gacagaggtc ggccacgttc gcctgcaact
      661 ccgaccccat cgcctgctcg aggtaggtgg tgatctgcat ctcctcgccg cgatagagcg
      721 cgccgaggtc gggcacgccc gccacctcgg cggcgaagcg aatgcaccgc gtgcattgga
      781 tgcagcggtt catcgaggtt ttcacgagcg ggccgatgta cttgtcggtc acggcgcgct
      841 tgttctcgtg gtagcgcgag gtgtcgaccc cgtaggccat ggcctggtcc tggaggtcgc
      901 attcgccgcc ctggtcgcag atcgggcagt cgagcggatg gttgatgagg aggaactcca
      961 tcacaccttc gcgcgccttc ttcaccaccg gcgtcttggt gttgacaacc ggcgcctcgc
     1021 cgttcgggcc cgggcggcag tcgcgcacgg cccacgcgca ggaggcgacg ggcttcggcg
     1081 cacccttgag ctcgacgagg cacatgcggc agttgcctgc gatcgacagc cgctcgtgga
     1141 agcagaagcg cgggatctcg gcgcccgcgg cctcacaggc ttgcagcagc gtgtactccg
     1201 gcggaacgtc gacctcggtg ccgtcgatga cgagtttggt catagcttgc aggtctcgat
     1261 aatcttctgg acgcgggcga caaggtcgcg cacggccgcc ttggacggcg ttcccttcat
     1321 gcggaccgcg cccttgaact cgttcggatc gatgctgatg ggcccgccgc cctggagcgc
     1381 ctgacggatc ttgcgctcgg cacgggcggc cttgtcgcca tcgacggtga cgttctgggc
     1441 cacgagcgcc atggcgcccg ccttgatctg ctgcaggtcc tcgacctcga ccgtgcaggt
     1501 ccgcgcctgc gctgccgtgg cggcgaggac cacggcggcc gtcgcaagcg ggatgggagc
     1561 catccgcatc acgtcactcc gccgcgatcc gcaccggctc ggggtgcggg ttcgcggcgt
     1621 attggtcgat gcgcgcctcg atctcgctcc ggtagtgccg gatgagaccc tggatcggcc
     1681 aggccgccgc gtcgccgagc gcgcagatgg tgtggccctc gatctgggtc gtgacctcga
     1741 gcagcatgtc gatctcgcgc cgcgaggacc gcccctcggc catccgggag agcacccgcc
     1801 acatccagcc cgtgccctcg cggcagggcg tgcactggcc gcagctctcg tgcttgtaga
     1861 agtacgagat ccgcgcgatc gcccgcacga tgtcggtgga ccggtcgagc acgatcaccg
     1921 ccgcggtgcc gaggccggac ttcaggttcc gcagggtgtc gaaatccatg gatgcgtcga
     1981 tgatctgctc ggccgggacg agcggcaccg aggagccccc cggaatcgag cacaggaggt
     2041 tgtcccagcc gccgcgcatc ccgccgcagt gcttgtcgat gagctcgcgg aaggagatgc
     2101 ccatctcctc ctccacgttg cacggcttgt tcacatggcc ggagatgcag aacagcttgg
     2161 tcccggtgtt gttgggcttg ccaagccccg agaaccagcc gccgccgcgg cgcaggatgg
     2221 tcggcgcaac cgcaatcgac tcgacattgt tgaccgtcgt cgggcagccg tagaggccca
     2281 tgttggcggg aaacggcggc ttcagccgcg gcattccctt cttgccctcg aggctctcga
     2341 gcagcgccgt ctcctcgccg cagatgtagg cgccggcgcc atggtggacg tagaggtcga
     2401 acggccagcc gtggacattg tccttgccga tgaggttcgc ctcataggct tcgtccacgg
     2461 cgcgctggag cgcgatgcgc tcggcgatgt attcgccgcg gatgtagatg taggcggcgt
     2521 tcgctcccat cgcgaaggac gcgatcaggc aaccctcgat gaggagatgc gggtcatgcc
     2581 gcatgatctc ccggtccttg cacgtgcccg gctccgactc gtcggcgttg accacgagat
     2641 agctcgggcg cccgtccgac tgcttgggca tgaaggacca cttcagcccg gtcgggaagc
     2701 cggcgccgcc gcggccgcgc aagcccgatt ccttcatctc ggcgacgatc cagtcgcggc
     2761 ccttctcgat caggaacttc gtgccgtccc atgcgccgcg catctgcgcg gcctgcaagc
     2821 ccggcgaatg gaagccgtac aggttggtga agatacggtc gcggtcgttc agcatggggt
     2881 cacgcggtca tacgggcggc gcgggtcgac ggcatgcgcg ctcacgcctt tccggtcgaa
     2941 tcgggcgagg gagacttgtc gacgcgcacg tcgggcttcg agtcgctgcc gtcacggcgt
     3001 gctggcgcat cggagaccgg cgtgcccgac acgggcgtag agcccttgtc gtcggcgacg
     3061 ggccggccct cggcgggctt cgacggggtc ggcgtgtacg acttctcgct ctgcggcgtg
     3121 cctttcgggg cttcgtcggt ccgcggcgca accgtggtgg cgcggtcggg agcaccggcg
     3181 tcgcgccgcc cctccg
//
LOCUS       DASQWN010000672         3188 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_989336, whole genome shotgun sequence.
ACCESSION   DASQWN010000672 DASQWN010000000
VERSION     DASQWN010000672.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 3188)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3188)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3188
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_989336"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..798)
                     /locus_tag="VE686_12605"
     CDS             complement(<1..798)
                     /locus_tag="VE686_12605"
                     /inference="COORDINATES: protein motif:HMM:NF014789.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016627 - oxidoreductase activity, acting
                     on the CH-CH group of donors [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase family protein"
                     /protein_id="HYY85327.1"
                     /translation="MASPRRTACPTRSWPRCASSASSACRSRRNTAASASRWSRRRRS
                     RSCTSPAFRSILGTNNGIGSQGLVIDGTAEQKARYLPRLASGEWIAAFALSEPDAGSD
                     PGGMRTHAVQDGDEWVIDGVKNWITNAGVADRYTVFAATDPSARASQRVTAFSVPADA
                     PGFSVASLEHKMGMRGSPTGQLVFEDVEVADEDVIGAVGDGFGIAMRTLDHSRLGIAA
                     QGLGIAQGATDYAADYAKERRQFGQPIAEFQAIQFKIADMETGNCAGR"
     gene            complement(891..2351)
                     /locus_tag="VE686_12610"
     CDS             complement(891..2351)
                     /locus_tag="VE686_12610"
                     /inference="COORDINATES: protein motif:HMM:NF016101.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016788 - hydrolase activity, acting on
                     ester bonds [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alkaline phosphatase family protein"
                     /protein_id="HYY85328.1"
                     /translation="MIRQAHRAAWAAGFGLLLATAHAQAQGPQGVDRLSHIVVLYMEN
                     RSFDNVFGEFPGANGLANAGEAAIQKDRDGKPYAVLPEAKGPFHVRANPDALYAMETL
                     DDLPNRPFRTVGIRPGVTAATHTRDLIHAFYTNRSQIHGGKNDWFALFSNAGGLAMSY
                     YAAEDMKDTNLWKLAQRSTLLDNFFMGTFGGSFLNHVWLVCACAPVWPDAPKSQRSEI
                     DAEGQAILDRRVTAAVDGDFAVNTTQSIFLNNGRQGENVLPPQDAVTIGDRLTEKGVD
                     WAWYSGGWNVAAKSDRTPEEDALLRTQVFQWHHHPFAYFARFDPTRQKGRDQRTAHLR
                     DASTLEADIKSGKLPPVTFYKPIGVLNQHPGYANLLTGDEELGRIVRLMEESPMKDSF
                     AVIITYDENGGLWDHVAPPQGRAAGNRADFFGPGSRVPTVVVSPLARKGHVDHTEYET
                     TSILKLIAERHRLAPLPSARFGAVESLSKAFDFDQR"
     gene            2526..>3188
                     /locus_tag="VE686_12615"
     CDS             2526..>3188
                     /locus_tag="VE686_12615"
                     /inference="COORDINATES: protein motif:HMM:NF018210.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein/permease"
                     /protein_id="HYY85329.1"
                     /translation="MQAGSGSQAAAGEPESKRHGRPPTYVGRKFLRMARGFWSGETKR
                     QAWLLTAGVLVFVILNLAAALGVNRWNRYFFDALDKKEVERVWLGVGLILGLAVFSAA
                     SQVGLVHMRMRLQLRWRQWLTRHLIKRWLSERRFYQLTIVTGEGSNPEFRIADDARLA
                     IEPLVEFVNGLLNAILAALAFIGVLWAVGGGIQFEAFGTAFSIPGYMVLAAVVYSAIT
                     SIA"
BASE COUNT          464 a         1056 c         1130 g          538 t
ORIGIN      
        1 gcgcccggcg cagttgccgg tctccatgtc ggcgatcttg aactggatcg cctggaactc
       61 agcgatcggc tgaccgaact gacgccgctc cttggcgtag tcggcagcgt aatcggttgc
      121 tccctgggcg atcccgaggc cctgggcggc gatgccgagc cgggagtggt cgagcgtgcg
      181 catcgcgatg ccgaagccgt cgccgaccgc gccgatcacg tcctcgtcgg ccacctcgac
      241 gtcctcgaac acgagctggc cggtcggcga gccgcgcatg cccatcttgt gctcgagcga
      301 cgcgaccgag aagcccggcg cgtccgccgg caccgagaac gccgtcacgc gctgggacgc
      361 gcgcgcggag ggatccgtgg cggcgaagac cgtgtagcgg tcggccacgc cagcgttggt
      421 gatccagttc ttgacgccgt cgatcaccca ctcgtcgccg tcctggacgg catgcgtacg
      481 catcccgccc gggtccgagc cggcgtccgg ctccgagagg gcgaaggcgg cgatccactc
      541 gcccgaggcg aggcgcggca ggtagcgcgc cttctgctcc gccgtgccgt cgatcacgag
      601 cccttgagag ccgatgccgt tgttggtgcc gaggatcgag cggaaggccg gcgacgtgca
      661 ggaacgcgac ctgcgcctcc tcgaccatcg tgaggccgag gccgccgtat tcctccggga
      721 tcgacaggcc gaagaggccg agctcgcgca tctcggccac gacctcgtcg ggcacgcggt
      781 cctcctcggc gacgcgatgc tcgaggggcc gcagccgctc cgtcacgaag cgctcgacgg
      841 tgtcgaggag ctgggtgagc gtgtcctggt cgagagccat gcggaacggg tcagcgctgg
      901 tcgaagtcga aggccttgga caggctctcg acggccccga agcgggcgct cggcaagggt
      961 gcaaggcggt gccgctcggc gatgagcttc aggatcgacg tcgtctcgta ctcggtgtgg
     1021 tcgacgtgcc ccttgcgggc gagcggcgag acgacgacgg tcggaacgcg cgaaccggga
     1081 ccgaagaagt cagcccggtt gccggcggcg cgcccctgcg gcggcgcgac gtggtcccac
     1141 aagccgccgt tttcgtcgta cgtgatgatg acggcgaagc tgtccttcat ggggctctct
     1201 tccatgagcc ggacgatgcg tccgagctcc tcgtcgccgg tgaggaggtt ggcgtagccg
     1261 gggtgctggt tgagcacgcc gatgggcttg tagaacgtca ccggcggcag cttgcccgac
     1321 ttgatgtcgg cctcgagcgt gctcgcgtcg cgcaggtgcg cggtacgctg gtcgcggccc
     1381 ttctgccgcg tcgggtcgaa gcgggcgaaa tacgcgaacg gatggtggtg ccactggaat
     1441 acctgggtgc gcaggagcgc atcctcctcc ggcgtgcgat cggacttggc cgccacgttc
     1501 cagccgcccg aataccaggc ccaatcgacg cctttttcgg tgagccggtc gccgatggtc
     1561 acggcgtcct ggggcggcag cacgttctcg ccctggcggc cgttgttgag gaagatcgac
     1621 tgggtcgtgt tgacggcgaa gtcgccatcg accgccgccg tgacgcgacg atccaggatc
     1681 gcctgccctt cggcatcgat ctccgagcgc tggctcttcg gcgcgtccgg ccacaccggc
     1741 gcgcaggcgc agacgagcca gacgtggttg aggaacgacc cgccgaaggt gcccatgaag
     1801 aagttgtcga gcagcgtgga acgctgcgcg agcttccaca ggttcgtgtc cttcatgtcc
     1861 tcggcagcgt aatagctcat ggcgagcccg ccggcgttgg agaacagggc gaaccagtcg
     1921 tttttgccgc cgtggatctg ggagcggttg gtgtagaacg cgtggatgag gtcgcgggtg
     1981 tgcgtcgccg cggtcacgcc cgggcggatg ccgacggtgc ggaagggacg gttgggcagg
     2041 tcgtcgaggg tttccatggc atagagcgcg tccgggttgg cgcgcacgtg gaacggaccc
     2101 ttcgcctcgg gcagcaccgc atagggcttg ccgtcgcgat ccttctggat cgcggcctcg
     2161 cccgcgttgg ccaagccatt ggcgcccgga aactcgccga acacgttatc gaagctgcgg
     2221 ttctccatgt agagaacgac gatgtgcgac agcctgtcga ccccctgcgg gccctgcgcc
     2281 tgagcgtgag ccgtcgcgag gaggaggccg aagccggcag cccatgccgc cctgtgcgcc
     2341 tgccgaatca tcgtgcgtcc acccttgctc cgggttgcgt accggcgcca caaaagccct
     2401 tctgcgccgc cgccgcaagc cgcggcgggc tgaactccga cagggctccg agggaggcag
     2461 caggaacggt cggcaccccg ccgcattgag actttgtctc agaaggttcc gaggaggtct
     2521 cctgcatgca ggcgggttca ggttcgcaag ctgctgccgg cgagccggaa tcgaaacggc
     2581 acggccgccc tcccacctat gtcgggcgca agttcctgcg catggcgcgc gggttctggt
     2641 cgggcgagac caagcgccag gcgtggctcc tcaccgccgg ggtcctcgtc ttcgtcatcc
     2701 tcaacctggc ggcagcgctc ggggtcaacc gctggaaccg gtacttcttc gacgccctcg
     2761 acaagaagga ggtcgagcgc gtctggctcg gggtcggcct gatcctcggg cttgcggtgt
     2821 tctcggcggc gtcccaggtc ggcctcgtgc acatgcgcat gcggctgcag ctgcgctggc
     2881 gccagtggct cacgcgccat ctcatcaagc gctggctctc ggagcggcgc ttctaccagc
     2941 tcaccatcgt caccggcgag ggctccaatc cggagttccg catcgccgat gacgcccggc
     3001 tcgccatcga gcccctggtg gaattcgtca atgggctcct gaacgccatc ctggcggcgc
     3061 tggccttcat cggcgtgctc tgggcggtgg gcggcggcat ccagttcgag gcgttcggga
     3121 ccgccttctc gatccccggc tacatggtgc tggcggcggt cgtctattcg gcgatcacgt
     3181 cgattgcc
//
LOCUS       DASQWN010000673         2364 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_290663, whole genome shotgun sequence.
ACCESSION   DASQWN010000673 DASQWN010000000
VERSION     DASQWN010000673.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2364)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2364)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2364
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_290663"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>2364
                     /locus_tag="VE686_12620"
     CDS             <1..>2364
                     /locus_tag="VE686_12620"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HYY85330.1"
                     /translation="SLALLWHILRQPEASPKRRVAAIMLDLGGLSYGLYSGGEVTSVL
                     YPIYLWVIFGNGFRFGLKYLYGAVAVGVAGFGTVTLTTSYWALNPHLSIGLFVGLIVL
                     PVYCGTLIRKLSAAKQQAEDASRAKSLFLASVSHELRTPLNAIIGMSALLQDTKLDAE
                     QEDMARTIGTSGRSLLALISDLLNFSRLEAGRMPVAVAEFDLLEAVANVRAMLGVAAR
                     AKGLRLSAHVTPRTPYRLRGDARHLQEILVNLVGNAVKFTAEGGVAIAVDLVDRSAGR
                     VRLRFEVSDTGIGIAPEARERIFESFTQADETIIDRFGGTGLGLAIVKQLVELQGGRI
                     GMDSELGAGSTFWFEIELDEAEDAGGHAGLNGARVVLVSADRELVQRVSSALEKEDAA
                     VEALPPVVSPAELESALARAGKRAALLVDEATLGEHRTVAARWPGVAASQAAGVILFA
                     ADAQDGLPAPSVRQEYACVLSPGVDVEQLKAAVRIATARPEEAAGLVNLPPNESSRSL
                     RILVADDNRTNQKVIGKILERAGHQVTSADNGEQAIAALHESTPDLVLMDINMPVLNG
                     IEATKLYRLASVGRKRVPILALTADATPEARHECEQAGMDGCVTKPIEPKQLLDLIAA
                     LTQSSGLAEEAAPHENVQSIAAHPRFRGAAEAAIDESTLADLRSLGGPDFVADVVAGF
                     LADTGQVLLDLAQAVASGDVDAFRDHLHALRSASANIGAKEIYRLCLDWRKIDAQELA
                     SSGARHVAALTTEFERASSDLREHLGALQSDGSGEPVRGSARSLAAD"
BASE COUNT          381 a          806 c          814 g          363 t
ORIGIN      
        1 cgtcgctcgc cctgctgtgg cacatcctgc ggcagccgga ggcgtcgccg aagcgccgcg
       61 tggccgcgat catgctcgat ctcggcgggc tgtcgtacgg cctctacagc ggcggcgaag
      121 tcacctccgt cctctacccg atctacctct gggtgatttt cggcaacggc ttccgcttcg
      181 ggctgaagta cctctacggc gccgtggcgg tcggggtcgc cggcttcggg accgtgacgc
      241 tgaccaccag ctattgggcg ctcaatccgc acctctccat cggtctcttc gtcggcctaa
      301 tcgtccttcc ggtctattgc ggaacgctga ttcgaaaact gtcggcggcg aagcagcagg
      361 ccgaggatgc gagccgggcg aagagcctgt tccttgccag cgtcagccac gagctgcgca
      421 cgcccctcaa cgccatcatt ggaatgagcg cgctgctgca ggacaccaag ctggacgccg
      481 agcaggagga catggcgcgg acgataggca cttcgggccg gtcgctgctg gcgctcatca
      541 gcgacctgct caacttctcg cgcctcgagg cgggccggat gccggtggcg gtcgccgagt
      601 tcgacctcct tgaggcggtc gccaacgttc gcgccatgct gggcgtcgcc gcccgggcta
      661 aggggctgcg cctttccgcc cacgtgacgc cccggacgcc ttaccggctg cggggagacg
      721 cgcggcacct tcaagagatc ctcgtcaatc tcgtcggcaa cgccgtcaag ttcaccgccg
      781 agggcggggt cgcgatcgcc gtcgaccttg tcgaccggag tgcaggacgc gtgcgcctgc
      841 gcttcgaggt atcggatacg ggcatcggca ttgcgccgga agcacgcgag cgcatcttcg
      901 agagctttac gcaggccgac gagacgatca tcgaccgctt cggcggcacc ggcctcggcc
      961 tcgccatcgt caagcagttg gtcgagctgc aaggcgggcg catcggcatg gacagcgagc
     1021 tcggcgcggg gagcacgttc tggttcgaga tcgagctaga cgaggccgaa gacgccggcg
     1081 gtcatgccgg cctgaacggc gcgcgcgtgg tcctcgtctc ggcggaccgt gagctcgtgc
     1141 agcgggtgtc gagcgctctg gagaaggaag acgcggccgt cgaggcgctg ccgccggtcg
     1201 tatcgcccgc cgagctcgag tccgctctcg cccgggcggg gaaacgcgcg gcgttgctgg
     1261 tggatgaagc gacgctcggc gagcatcgca ccgtcgcagc aagatggccc ggggtcgcgg
     1321 cctctcaagc cgcaggagtc atcctctttg ccgcggacgc gcaggacgga ttgccggcgc
     1381 cgtcggtgcg ccaggagtat gcctgcgtac tctcgccggg tgtcgacgtc gagcagctca
     1441 aggccgccgt gcggatcgcg accgcccgcc cagaggaggc ggccggcctg gtgaacctcc
     1501 cccccaacga gtcatcgcgc agcctgagaa tcctcgtcgc cgacgacaac cggaccaacc
     1561 aaaaggtgat cgggaagatt ctcgaacgcg ccggccatca ggtcacctcc gctgataacg
     1621 gcgagcaggc gattgccgct ctccacgaga gcacgccgga cctcgtgctc atggacatca
     1681 acatgccggt gctgaacggc atcgaggcga cgaagctcta ccggttggcg tccgtgggta
     1741 ggaagcgcgt gccgatcctg gcgctcaccg ccgacgctac ccccgaagcg cgccacgagt
     1801 gcgagcaggc gggcatggac ggctgcgtga cgaagccgat cgagccgaag cagcttctcg
     1861 acctcatcgc tgccctgacc caatccagcg ggctcgcaga ggaagcggcg cctcacgaaa
     1921 acgtccagag catcgccgcc cacccgcgat tccgcggggc ggcagaggcg gcgatcgacg
     1981 aaagcacgct ggccgacctg cgttcgctcg gcggaccgga cttcgtcgct gacgtggtcg
     2041 ccggattcct cgccgacacg gggcaggtcc tgctcgatct ggcgcaagcc gtcgcgagcg
     2101 gcgacgtgga cgctttccgc gaccacttgc acgcgttgcg cagcgcgtcg gccaacatcg
     2161 gagcgaagga aatctaccgc ctgtgcctcg actggcgaaa gatcgatgcc caggaactgg
     2221 cgtcgtcggg cgctcgccac gtcgccgcgc tgacgacgga gttcgagcgg gcgagcagcg
     2281 acttgcgcga acaccttggg gccctgcagt cggacgggag cggcgagccg gtccgcgggt
     2341 cggcccgctc gctggcagcc gacg
//
LOCUS       DASQWN010000674         4880 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_889938, whole genome shotgun sequence.
ACCESSION   DASQWN010000674 DASQWN010000000
VERSION     DASQWN010000674.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 4880)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4880)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4880
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_889938"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..420
                     /locus_tag="VE686_12625"
     CDS             <1..420
                     /locus_tag="VE686_12625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012319388.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma-54 factor"
                     /protein_id="HYY85331.1"
                     /translation="QQDGFFVNGVAHLRPLNLKTVADAIGMHESTVSRVTSNKSIGTS
                     RGTFEMKYFFTASIAGAAGADAHSSEAVRHRVRQLIEAEHPDEVLSDDALVQKLNSEG
                     IDIARRTVAKYRESLRLPSSIERRREKQARARQLARA"
     gene            634..1098
                     /gene="ptsN"
                     /locus_tag="VE686_12630"
     CDS             634..1098
                     /gene="ptsN"
                     /locus_tag="VE686_12630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012319935.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008982 -
                     protein-N(PI)-phosphohistidine-sugar phosphotransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA];
                     GO_process: GO:0009401 - phosphoenolpyruvate-dependent
                     sugar phosphotransferase system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PTS IIA-like nitrogen regulatory protein PtsN"
                     /protein_id="HYY85332.1"
                     /translation="MPLLDFLAPAAVIPALRASSKKQALQELAEVAARLTGLEERTIY
                     EVLLQRERLGSTGIGDGVAIPHAKLAKLDSIFGLVARLDKPIDFEALDGQPVDLMFVL
                     LAPEEAGADHLKALARIARVVREPGMSDRIRATRDAEALYALLTSDSATRAA"
     gene            1176..2800
                     /locus_tag="VE686_12635"
                     /pseudo
     CDS             1176..2800
                     /locus_tag="VE686_12635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009336945.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0004333 - fumarate hydratase activity
                     [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0006099 - tricarboxylic acid cycle
                     [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="fumarate hydratase"
     gene            complement(2909..3355)
                     /locus_tag="VE686_12640"
     CDS             complement(2909..3355)
                     /locus_tag="VE686_12640"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY85333.1"
                     /translation="MTRATILLAAALLVAVAARPAVAQDGRPPLADEVEKRFDDRFMV
                     VTDGGGTYTIYQRIEANLVAPREVVCLMRECYVAIATGSEEALQRASREPAVRRPLLQ
                     LFALARDAYARVLATPKDARAQAEAAWLQGAARIEPCLREGRCWTP"
     gene            complement(3352..4440)
                     /locus_tag="VE686_12645"
     CDS             complement(3352..4440)
                     /locus_tag="VE686_12645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009490755.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyamine ABC transporter substrate-binding
                     protein"
                     /protein_id="HYY85334.1"
                     /translation="MIRTLFASLAVGLALLSGAAAQERVVNVYNWSDYIDPRVLEDFT
                     KETGIKVTYDTYDNNEIVETKLLAGKSGYDVVVPSGPFLQRLIKAGAFRKLDKAKLPN
                     LTHMWPEVMQRLQVFDPGNQYAVNYMWGTTGIGVNVRKVRERLGTQPLNTWDIVLKPE
                     FATRLKDCGVQVLDAPEDVFPNVLNYLGLNPDSKKPEDLQRAGDAMFRVRGAVQKFHS
                     SEYINGLANGDVCMAVGYSGDVIQARKRAEEAKNGVEIAYLIPREGALMWFDSMAIPA
                     DARNVAEAHAFIDFLMRPQVAAANANFVAYASGNLAAKQFVKPELANDPSVYPDEATF
                     KRLFTNTAYDDRSQRLVTRLWTRVKTGR"
BASE COUNT          760 a         1724 c         1642 g          754 t
ORIGIN      
        1 cagcaggacg gattcttcgt caacggcgtg gcccacctgc gcccgctcaa cctgaagacc
       61 gtcgctgacg ccatcggcat gcacgagtcc accgtctcac gcgtgacctc gaacaagtcg
      121 atcggaacga gccgtggcac cttcgagatg aagtacttct tcacggcgtc catcgcgggc
      181 gccgcgggcg ccgatgccca ctcgtccgag gccgtgcggc accgggtgcg acagctcatc
      241 gaggccgagc accccgacga ggtcttgtcc gacgacgccc tcgtccagaa gctcaacagc
      301 gagggcatcg atatcgcccg ccggacggtg gcgaaatatc gcgaatcgtt gcgcctcccg
      361 tcgtccatcg agcggcggcg ggagaagcaa gcccgcgccc gtcagctcgc gcgggcctag
      421 cgggccctgt cggcggcggc cgggcagctc tgcggcttcg ttttcccgct ggcccggggt
      481 ccccgaaagt cgtataggcc cggcccgacg ggcggccctt ggtgccgggc cgtctcgggc
      541 cgaagaggcg acgctgccgg gggctggccc aacccttgct cattccccac atggtcgagg
      601 cgcgctcctc gcccacaacg atgcggtcgg ccgatgccct tgctcgactt cctcgcgccc
      661 gccgccgtca tcccggcgtt gcgcgccagc agcaaaaagc aggcgctcca ggagctcgcc
      721 gaggtggcgg cgcgcctcac cggcctggag gagcggacga tctacgaggt gctcctgcag
      781 cgcgagcggc tcggctcgac cgggatcggc gacggcgttg ccattccgca cgccaagctc
      841 gcgaagctcg acagcatttt cgggctcgtc gcacggctcg acaagcccat cgacttcgag
      901 gcgctcgacg gccagcccgt cgatctgatg ttcgtcctgc tcgcccccga ggaggcaggc
      961 gctgaccacc tcaaggcgct cgcccgcatc gcccgggtcg tgcgcgagcc cggcatgagc
     1021 gaccgcatcc gcgcgacccg cgacgccgag gcgctctacg cgctactgac gtcggattcg
     1081 gccacccgcg ccgcctgatc cccggcggct ttgacctgcc gcacctcagc gctacaagcc
     1141 gatctctccg ccttcagctc ccgggagcct ccaccatgcc gaccgccgcc gcgcgcgagc
     1201 acgacctgtt tccgcttggg gccgacacga cgccgtaccg caagctcacc acggagggcg
     1261 tacgggtcga ggggttcggc ggccgcgaga tggtggtcgt tgaccgcgag gccgtgcgga
     1321 agctcgccga gcaggccttc atggacatca accatctgct ccggcccggg catctgaagc
     1381 agctcgcctc gatcctcgac gaccctgagg cgacctcgaa cgacaagttc gtcgcctacg
     1441 acctcctcaa gaacgccaac atcgcggcgg gcgggatcct ccccatgtgc caggacaccg
     1501 gcacggcgat cgtaatgggc aagaagggcc gcttcatctg gacggagtgc gacgacgagg
     1561 cggcgatcgc cgagggcgtg cgcgacgcgt atctcaagaa gaacctgcgc tattcgcagc
     1621 tcgcgcccct ctcgatgttc gaggaggtca acacccgctc gaacctgccg gcgcagatcg
     1681 agatctatgc cgagggggag gacgcctaca agttcctgtt cgtcgccaag ggcggcggct
     1741 cggcgaacaa gacgttcctg ttccaggcga cgccctcggt gctcacccgc gagcgcctgt
     1801 tggcctcctc aaggagaaga tcctgacgct gggcaccgcc gcctgcccgc cctatcacct
     1861 tgcaatcgcc atcggtggca tgaccgccga gcagaacctg aaggccgtga agctcggctc
     1921 gacccgctac ctcgacgccc tgccccgcca agggtcggag gcgggccacg ccttccgcga
     1981 cgtcgagctc gaggccgagg tgcaccgcat gagccaacag ctcggtgtcg gcgcgcagtt
     2041 cggcggcaag tacttctgcc acgacgtgcg ggtgatccgc ctcccgcgcc acggtgcttc
     2101 gctgccgatc ggcctcgggg tctcgtgctc ggcggaccgc caggcgctcg gaaagatcac
     2161 ccgcgacggc gtctacctcg agcagctcga ggccaacccg gcgcaatacc tgcccgacat
     2221 cgacgcctcg cagctcggcg gcgaggtggt gcgcatcgac ctcaaccagc ccatgtccga
     2281 catcctcggc acgctgaccc ggcatcccat ccgcacgcgg ctgtccctgt cgggtccgat
     2341 gatcgtcgcc cgcgacatcg cgcatgcgaa gatccgcgag cgtctcgagc gcggcgagcc
     2401 gatgccggag tacttcaaga accacccgat ctattacgcc ggaccggcga agacgccgga
     2461 gggctacgcc tcgggctcct tcggcccgac caccgccggc cgcatggatt cgtacgtcga
     2521 ccagttccag gcggcgggcg gctccatggt gatgctcgcc aagggcaacc gctcgaagga
     2581 cgtgcgccag gcctgccagg cgcacggcgg cttctacctc ggctccatcg gcggcccggc
     2641 cgcgcgcctc gcccaggact gcatccgcaa ggtcgaggtg gtcgaatacc cggagctcgg
     2701 catggaggcg atctggcgca tcgaggtcga ggattttccg gccttcatcg tgacggacga
     2761 caagggcaac gacttcttcc gcgagctgaa tttgggatag cccccgtcat cctcgggcgg
     2821 cgcgaagcgc gacccgagga cctcgtgccg agcgaacctg cgccgggatc ctcgggtcgc
     2881 cgctgaagcg gcgcccgagg atgacgggtt aaggggtcca gcatcgcccc tccctcaggc
     2941 acggctcgat cctcgccgca ccctggagcc acgccgcctc ggcctgcgcg cgcgcatcct
     3001 tgggcgtcgc gagcacccgc gcgtaggcgt cgcgcgcgag cgcgaacagc tgcagcagcg
     3061 ggcgtcgcac ggccggctcg cgggaggcgc gctgcagggc ctcctccgac ccggtcgcga
     3121 tggcgacgta gcactcgcgc atgaggcaca cgacctcgcg cggtgccacg aggttcgcct
     3181 cgatgcgctg gtagatggtg taggtcccgc cgccgtcggt gacgaccatg aaacggtcgt
     3241 cgaagcgctt ctcgacctcg tcggcgaggg gcgggcggcc gtcctgcgcg acggcgggcc
     3301 gcgctgccac ggcgacaagc agcgccgcgg ccagcaagat cgtggcgcgc gtcaccggcc
     3361 cgtcttaacc cgcgtccaga ggcgggtgac gaggcgctgc gagcggtcgt cgtaggcggt
     3421 gttggtgaac aggcgcttga acgtcgcctc gtcgggatag acgctcgggt cgttggcgag
     3481 ttcgggcttc acgaactgct tcgccgcaag gttgccggag gcgtaggcga cgaagttggc
     3541 gttcgccgcc gcgacctggg ggcgcatcag gaagtcgatg aaggcgtgcg cctcggcgac
     3601 attcctggca tcggccggaa tggccattga atcgaaccac atgagcgcgc cctcgcgcgg
     3661 gatcagatag gcgatctcga cgccgttctt ggcctcctcg gcccgcttcc tcgcttggat
     3721 gacgtcgccc gagtagccga cggccatgca cacgtcgccg ttggcgagcc cgttgatgta
     3781 ttccgaggag tggaacttct gcaccgcgcc gcggacgcgg aacatggcgt cgccggcgcg
     3841 ctgcaggtcc tccggcttct tggagtccgg attgagcccg agatagttca gcacgttcgg
     3901 gaacacgtcc tcgggggcgt cgaggacctg gacgccgcag tccttgaggc gcgtggcgaa
     3961 ctcgggcttc agcacgatat cccaggtgtt gaggggctgc gtgccgagcc gctcgcgcac
     4021 cttgcgcacg ttcacgccta tgccggtcgt gccccacatg tagttcacgg catactggtt
     4081 gcctgggtcg aagacctgga ggcgctgcat cacctcgggc cacatatgcg tgaggttcgg
     4141 cagcttcgcc ttgtcgagct tccggaacgc gcccgccttg atcagccgct gcaggaacgg
     4201 acccgacggc accacgacgt cgtagccgga tttgcccgcg agcagcttcg tctcgacgat
     4261 ctcgttgttg tcgtaggtgt cgtaggtcac cttgatgccg gtctccttgg tgaagtcctc
     4321 gagcacccgg gggtcgatgt agtccgacca gttgtagacg ttgacgacgc gctcctgcgc
     4381 ggcggcgccc gaaaggagcg cgaggccgac ggcgagggag gcgaaaagcg tgcggatcat
     4441 cgaggcggcg tatccctgtc gcgaggcgct gtcgcggcga acctagggac tgcggcacgc
     4501 cgagacaacc aagccccggc ggcggctgtg ctcatcgtag gtccgccttg gttgcaaagc
     4561 gccgtcccgg cctggcgcag acgcgccaaa accctcgcag cccgtgctgg cccgagttga
     4621 tgcttgtcgc tttgcgcgtc ctcttgaaaa gagggggcgc gaggcgcggt cggccccggc
     4681 cgcgaggccg ggcggaaaac aggcaggcag gccgtccccg cgtgggccgg ccgcgcctcg
     4741 caccgcggtg ctgttgatcc ctggtcccgc gcttcggcgc tacgagggag ggctgcctcc
     4801 cgagcacctc aagcgcttgc gcgcggaccc tctctcggca gtgggcctcg gattcgaaac
     4861 cgcatcccgg ggacgaaccc
//
LOCUS       DASQWN010000675         5510 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_492716, whole genome shotgun sequence.
ACCESSION   DASQWN010000675 DASQWN010000000
VERSION     DASQWN010000675.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 5510)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5510)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5510
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_492716"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(94..903)
                     /locus_tag="VE686_12650"
     CDS             complement(94..903)
                     /locus_tag="VE686_12650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003594003.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HYY85335.1"
                     /translation="MHTSIRPVGDHLRSWRQRRRMSQLDLALEAQISQRHLSFVESGR
                     STPSREMVLNLAERLELPLRDRNILLQAAGYAPVFPERSLDDPALKAARAAVDLVLKA
                     HEPFPALAVDRHWMLVAANAAVRPLLAGVADPDLLKPPVNVLRLSLHPQGLAPRIANL
                     AEWRTHLLERLRHQIDVTGDTVLARLMRELSGYPEIGAAGAVAARGAAPDYAGVVVPL
                     RLVTDGGVLSFFSTTTVFGTPVDVTLSELALETFFPADDATAQALRGGTPL"
     gene            1022..1432
                     /locus_tag="VE686_12655"
     CDS             1022..1432
                     /locus_tag="VE686_12655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019402498.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY85336.1"
                     /translation="MSSFSPSHFLRYALVGDAVASGATGLLLALGAGALAGLLGLPEA
                     LMRSAGLILLPYAAVVACLGMRATISRRAVWAVIAVNGIWVADSLILLASGWVSPTAL
                     GYAFVLAQALVVLLFAEAQYFGLRRAARTWPVAA"
     gene            complement(1739..2293)
                     /locus_tag="VE686_12660"
     CDS             complement(1739..2293)
                     /locus_tag="VE686_12660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015929449.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pilus assembly protein N-terminal
                     domain-containing protein"
                     /protein_id="HYY85337.1"
                     /translation="MRRSPNGTPRRAAWTATALLAAVASSPAPAQPREAPGPKVIVAA
                     GGEAVPGPVRRGPSPRETVAVTIDHAKVIRLPEGAQTIIIGNPIIADVTTQKNGLLVL
                     TGKSYGVTNMIALDAAGSMLAESLISVQAPSESLVTVQRGLDRESYSCTPNCQPSILL
                     GDATKYFGDVGGQTEKRNALAAPR"
     gene            2578..2757
                     /locus_tag="VE686_12665"
     CDS             2578..2757
                     /locus_tag="VE686_12665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012709934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Flp family type IVb pilin"
                     /protein_id="HYY85338.1"
                     /translation="MKTLFSRFAADESGATAIEYGLIAALIAVAIITALNTLSGNLKN
                     VFNHVGNQLASSTTN"
     gene            2982..3482
                     /locus_tag="VE686_12670"
     CDS             2982..3482
                     /locus_tag="VE686_12670"
                     /EC_number="3.4.23.43"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012332253.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004190 - aspartic-type endopeptidase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin peptidase"
                     /protein_id="HYY85339.1"
                     /translation="MTMVLSLVFPALMAYAAASDLLTMTIPNKLTLLVVATFAIFAVA
                     TGLSGTAILLHVCAGALVLSACFAMFALGWMGGGDAKLAAGIALWLGFEPLVDYLLIA
                     AIAGGALTLLILFVRGTPVPTFVLGWSWFARLHDNRAGVPYGIALAGAALLVYPESPL
                     LKGLVG"
     gene            3593..4378
                     /gene="cpaB"
                     /locus_tag="VE686_12675"
     CDS             3593..4378
                     /gene="cpaB"
                     /locus_tag="VE686_12675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003598125.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Flp pilus assembly protein CpaB"
                     /protein_id="HYY85340.1"
                     /translation="MRPARLAVLAVAILTGAAAAYMMSSGEPSAPVVETAAAKTADVL
                     VAANDLPMGHSVKGPDLRWQPWPAESVGSGLLKRSEAPAAAEQTVGSIVRFAVFAGEP
                     IRREKLVKVDGTGFMSAILPSGMRAIAISIDTRGSSSAGGFILPNDRVDVLRTYRDED
                     ARRAGGVEAFRTETILPNVRVLAIGQNVQERNGEKVVTGETATLELTPAQAELVTLAQ
                     KVGQLSLALRSLADAGEPQEVREERADGTMTIVRYGVSQQAPR"
     gene            4387..>5510
                     /locus_tag="VE686_12680"
     CDS             4387..>5510
                     /locus_tag="VE686_12680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012332251.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pilus assembly protein N-terminal
                     domain-containing protein"
                     /protein_id="HYY85341.1"
                     /translation="MNFEKGGPMTMTRKAPGGFLAMLGLMVVAGGDGRAADRQDLIAR
                     GGAVGAPVLSVGADEQGVARRLDLSIGRSVILELPRDAKEVFVANPKVANAVVRSTRK
                     LFIIGMENGATSIFVMDSEGRQIAAIEATVGRDLTVLRQTLRTALPGARMEVRPAGDS
                     VLLTGLVGSASEAQQAVDIANAFVGVSGGLLSSTKGAVINALTIKGKDQVMLRVTVVE
                     VARSVVKQLGVNIDGNWSAFNFHTEAVFPIASQVLAGANQLGASGRSGNSRVNAVLQA
                     FERAGVSRVLAEPTIVAISGEAATFTAGGELPIPSAPDCTSTSPTGAVICRPGGATFK
                     PYGVSLNFTPVVLSENRISMRVNTEVTEPDYETQVTLQGVG"
BASE COUNT          841 a         1861 c         1833 g          975 t
ORIGIN      
        1 gatcctcgat ctggattact gggcgctgat gccgcgctga ggtgtcccca gccgttcggc
       61 ggcacggcag gccggactgc gccgttgcga tgatcagagc ggagtgccgc cgcgaagcgc
      121 ctgcgcggtg gcgtcgtcgg ccgggaagaa ggtttccagc gcgagctccg acagcgtcac
      181 gtcgaccggc gtcccgaaga ccgtggtggt cgagaagaat gacagcacgc cgccatcggt
      241 cacgaggcgg agcgggacga ccaccccggc gtagtcgggt gcagcgccgc gtgccgcgac
      301 ggccccggcc gcaccgatct cgggatagcc tgagagctcg cgcatgagcc tcgcgaggac
      361 ggtatcgccg gtcacgtcga tctggtggcg caggcgctcc aacagatgcg tgcgccattc
      421 cgcgaggttc gcgatccgtg gggcgagccc ctgcgggtga aggctgaggc gcaggacgtt
      481 cacgggcggc ttcaggaggt ccgggtcggc cacaccggcg aggagcgggc ggacggcggc
      541 attcgcggca accagcatcc aatggcggtc gacggcaagc gccgggaatg gctcgtgcgc
      601 cttcaggaca agatcgaccg ccgcgcgcgc cgctttgagc gcgggatcgt cgagtgagcg
      661 ctccgggaac acgggcgcgt agccggcggc ttgcagaagg atgttgcggt cccgcagagg
      721 gagttcgagc cgctccgcaa ggttcagcac catctcgcgg ctgggtgtcg agcggccgct
      781 ttccacgaag ctcaggtgcc tttgcgaaat ctgcgcctcc agcgcgaggt cgagctggct
      841 catgcgccgg cgctggcgcc agctgcggag atggtcgccg acggggcgga tcgaggtgtg
      901 catcatcgct gtgaagcgta ctcggccgcg ccgccgaaaa cgatgacctg cgacgtaatc
      961 gacgactgtc cggcagcatc ccatccttcc tccggtccaa ccaagcacct ggaggtcagc
     1021 catgtcgtcg ttctctccct cgcacttcct tcgttacgcc ctggtcgggg acgccgtcgc
     1081 aagcggcgcg acgggacttc tcctcgccct cggcgcggga gcgctcgccg ggctcctcgg
     1141 acttcctgag gctctgatgc ggtcggctgg cctcatcctc ttgccgtacg cagccgtcgt
     1201 ggcctgtctc ggaatgcgcg cgacgatatc ccgccgcgcc gtgtgggccg tcattgccgt
     1261 gaacggcatc tgggtcgcgg acagcctcat cctgctcgcg agcgggtggg tgtcgccgac
     1321 ggcactcggg tacgcgttcg tgctggccca ggccctcgtg gtcctgctgt ttgcagaggc
     1381 gcagtacttc ggattgcgcc gcgccgcccg cacgtggcct gttgctgcct gatggcgtgg
     1441 ggcgggaccg cattcccctt aggggccccg ttgggtatcg acgctcccgc ccccgagcct
     1501 tcgagacgca ccaccatgtt cccgaagctc gcgcctcgct caccccgaac acgtacgaat
     1561 tcgaggcctt gccgctggtg aagccacggg cttcgggcca cgactttcgg gctattcgtc
     1621 gttgatgaag tacgccctcg tgtccgggat gtcggccttg ctctgccgct gtggcggcgg
     1681 cctgcggcaa cggcgcggcc ggcgcagccc ctacaaccag acgatctgac cggccacgtc
     1741 agcggggcgc cgcgagcgcg ttccgcttct ccgtctggcc gccgacatcg ccgaagtact
     1801 tggtagcatc gccgagcagg atcgagggct ggcagttcgg ggtgcaggag tacgactcgc
     1861 ggtcgagccc acgctgcacc gtcacgagcg actcgctcgg cgcctgcacg ctgatgaggg
     1921 actccgccag catggacccg gcggcgtcga gcgcgatcat gttggtcacg ccgtagcttt
     1981 tgccggtcag caccaaaagc ccgttcttct gggtggtgac gtccgcaatg atcgggtttc
     2041 cgatgatgat ggtctgcgca ccttccggaa gacggatcac cttggcgtga tcgatggtga
     2101 ccgccaccgt ctctctgggc gaggggccgc gccgcacagg tcccggcacc gcttcgccgc
     2161 ccgccgctac gatgactttc ggcccgggtg cctcccgagg ctgggccggg gcgggagagg
     2221 acgccaccgc ggcgaggagc gcggtggcgg tccaagccgc gcgacggggc gtgccgttcg
     2281 ggcttctacg catcttaccg taaccctcga cgagacgtat tcaccggacg ttttccgcct
     2341 aaagggtgaa gaaacggtca agatcagccc tcggcggcct cgcgtgcggc tatcacgcct
     2401 cgctgccgcg acctcctgct actcctaaat acgctgcgga agtccggaga ccatccgtct
     2461 cggccgactt taactatgtt gaaacggggt cggcataggt tggcccctgg ttccgatgaa
     2521 ccggtgcatc cggccgtcgc taagcggcag tgtacgcaac ccacagagga gcaatgcatg
     2581 aagaccctgt ttagccggtt cgccgccgac gagtctggcg cgaccgccat cgagtacggc
     2641 ctgatcgctg ccctgatcgc ggtggcgatc atcaccgccc tgaacacgct ttcgggcaac
     2701 ctgaagaacg tcttcaacca cgtcggcaat cagctcgcga gctctaccac gaactgatcc
     2761 cgacgatggc gtcgagagcc gctcgcgggc gggacgcgga atcggccaca agcagccggc
     2821 ggagaccccg cttcggccgg atcttgcttt tggcctgcga cagtcggggg gcggctgcgg
     2881 tcggttgctc gcccgcggcc cgcctcccgt gctgatcccg tgaggacctg ctcccgccgg
     2941 cgactcgccc cggtggcgca ccattcccac gaggttcgct catgacgatg gttctctcgc
     3001 tggtctttcc ggcgctcatg gcctatgcgg ccgcaagcga tctgttgacc atgacgatcc
     3061 cgaacaagct gacgcttctg gtcgtcgcaa cgttcgcgat cttcgccgtc gcgaccgggt
     3121 tgtccgggac tgcgatcctc ctgcacgtct gcgcgggcgc gctcgtgctg tcggcctgct
     3181 tcgcgatgtt tgcactcggt tggatgggcg gcggcgacgc caagctcgcg gccggcattg
     3241 ccctgtggct cggcttcgag ccccttgtcg actacctgct catcgcggcg atcgccggcg
     3301 gtgcgctcac actcttgatc ctgttcgtgc gcggcactcc cgtcccgact tttgtcctcg
     3361 gttggagttg gtttgcccgg ctgcacgaca atcgggccgg cgtgccctac ggcatcgcgc
     3421 tcgcaggcgc ggccctgctc gtctatcccg agtcccctct gctcaagggc ctggtcggct
     3481 gacgcgctga gccaggcgcc gcatgcggtt ttatacgcgt gcttaaccat gtcttgacca
     3541 ttccctgctg aaatccgtcc gacaaacctc gtcgcgtctg gatttcactc tcatgagacc
     3601 tgctcgtctt gccgttttgg cggtcgcgat cctgaccggc gcggcagccg cgtacatgat
     3661 gagcagcggc gagccgtctg cgcccgtggt cgagacggcc gccgcgaaga cggcggacgt
     3721 tctcgtcgcc gccaacgacc tccccatggg gcatagcgtc aagggtcctg acctgcgctg
     3781 gcagccatgg ccggccgaga gcgtcgggag cgggctcttg aaacgctcgg aagcaccggc
     3841 cgcggccgag cagaccgtcg ggtcgatcgt gcgtttcgcc gtctttgcgg gtgagccgat
     3901 tcggcgagag aagctcgtca aggtcgacgg caccggcttc atgtcggcga tcctgccctc
     3961 cggtatgcgc gcaatcgcca tctcgatcga tacccgaggc agcagctccg ccggcggctt
     4021 catcctcccg aacgaccgcg tcgacgtcct tcggacctat cgcgacgagg acgccaggcg
     4081 cgccggcggt gtcgaggcat tcaggaccga gaccattctc cccaatgtgc gcgtgctcgc
     4141 catcggccag aacgtccagg agcgtaatgg cgagaaggtc gtcaccggcg agacggccac
     4201 cctcgaactc acacccgccc aggcggaact cgtaacgctg gcgcagaagg tcggccagct
     4261 gtcgcttgct ttgcgcagcc tcgccgatgc cggcgagccc caggaagttc gcgaagaacg
     4321 agccgacgga accatgacga tcgtccgcta tggcgtgtcg cagcaggcgc ccaggtgagc
     4381 cgcgcattga acttcgagaa aggtggcccg atgacgatga cccggaaagc acccggaggc
     4441 ttcctggcga tgctcgggct catggtcgtc gcgggcggtg acggccgcgc ggccgatcgc
     4501 caggacctta tcgccagggg aggcgccgtc ggcgcacccg tgctcagcgt cggcgcggac
     4561 gagcagggcg ttgcccgccg tctcgatctc tcgatcggcc gatcggttat cctcgagctg
     4621 ccgcgcgacg ccaaggaagt gttcgtggcc aacccgaagg tcgcaaacgc cgtcgtgcgc
     4681 tccacgcgca agctgttcat catcggaatg gagaacggcg cgacctccat cttcgtcatg
     4741 gacagcgaag ggcgccagat cgccgccatc gaagcgacgg tcggccgcga tctgacggtg
     4801 ctgcggcaga cactgcgtac cgcgcttccg ggcgcccgca tggaggtccg gccggccggc
     4861 gattcggtcc tgctcacagg acttgtcggc tcggcgtccg aagcgcagca ggccgtcgac
     4921 atcgccaatg ccttcgtcgg cgtgtcggga ggcctgctct cctccacgaa gggcgccgtc
     4981 atcaacgcgc tgaccatcaa gggcaaggat caggtcatgc ttcgcgtgac cgtggtcgag
     5041 gtcgcccgat ccgtcgtcaa gcagctcggc gtgaacatcg acgggaactg gtcggccttc
     5101 aactttcaca cggaggctgt ctttcccatc gcctcccaag tgctcgcggg tgccaatcag
     5161 ttgggggcga gcggccgtag cggcaattcc cgcgtgaatg cagtgcttca ggcgttcgag
     5221 cgagccggcg tgtcgcgcgt gctcgccgag cccaccattg ttgccatttc gggcgaggca
     5281 gccaccttta ccgcgggcgg cgagcttccg atcccctccg ccccagattg cacatccacg
     5341 tctccgacag gcgcggtcat ttgccgaccc ggcggcgcga cgttcaagcc ttatggcgtg
     5401 agtctgaact ttacccccgt ggttctgtct gaaaatcgca tcagcatgcg ggtcaacacg
     5461 gaggtaacgg aacccgatta cgagacccag gtgactctcc agggtgtcgg
//
LOCUS       DASQWN010000676         2113 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_368577, whole genome shotgun sequence.
ACCESSION   DASQWN010000676 DASQWN010000000
VERSION     DASQWN010000676.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2113)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2113)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2113
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_368577"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..945
                     /locus_tag="VE686_12685"
     CDS             <1..945
                     /locus_tag="VE686_12685"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF013382.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HYY85342.1"
                     /translation="ALLLLAQSGSRRNCEVVGIGLGSMALVRFSRLPLMPLIVAREKL
                     ARGDRPREVGGEPAIMDEPQGVREYDEFGTGGETGVHTFSARAISRLSPEGATCVDLG
                     CGSGRLLSRLARGRPDATIIGFDLSEPMLETGRQNLEREGLGERVRLRHADIRSFDAE
                     LDESPDVVSCNFALHHMPDEDDARRCLEAIARVRERSGCAVWIFDFARLRNPGTWPAF
                     CTLVNWPGPVVHSDAIESEKAAFSEEEMVRLLDETGLADLNHVRSRPLREQQVHWAPG
                     RDRPHPNTGLWRDVPVPPGARTLVLLALASFPRSLSSV"
     gene            complement(1157..1663)
                     /locus_tag="VE686_12690"
     CDS             complement(1157..1663)
                     /locus_tag="VE686_12690"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY85343.1"
                     /translation="MRRIALLAVITSTALVLSAQTAAAQTIPLEAHFKGTQTAKHPNC
                     PSVLFFCGSGTVEGFGAADYLLVPTAALVPLPNGCVSVDAQTTVSLQDGSGSLTLSVE
                     GTACFPGRSHEAPGSLKSFGNPFTATGTFEVTGGTGVFAGATGSGTATLKGAGAHNSV
                     DATGTLTL"
     gene            complement(1737..>2113)
                     /locus_tag="VE686_12695"
     CDS             complement(1737..>2113)
                     /locus_tag="VE686_12695"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY85344.1"
                     /translation="AALLHDIGEALASHLDGVGMAQLMRGESSADPSCDGRAPQLSSS
                     DGGRPLATTRPAVEDTEQRADWKPDTSFEPPLELVPAPCVHADLAAASALAATHEQHA
                     ASVIEIGSARASARWVAAPEAP"
BASE COUNT          303 a          705 c          758 g          347 t
ORIGIN      
        1 gcgctgctgc ttctcgcgca aagcgggagc cgtcgaaatt gcgaggttgt cggaataggc
       61 ttggggtcga tggcgctcgt gaggttctcg aggctcccgc tgatgccgct gatcgtggcc
      121 cgggagaagc tcgcgcgggg cgatcgcccg cgggaggtcg gtggggagcc ggcgatcatg
      181 gacgagccgc agggggtgag ggagtacgac gagttcggga ccggcggcga gaccggcgtc
      241 catacgttct ccgcgcgggc gatcagccgg ctgtcgcccg agggcgcgac gtgcgtggat
      301 ctcggctgcg gctccggacg actgctttcg cgcctcgcac gcggccggcc ggacgcgacg
      361 atcatcgggt tcgatctctc cgagccgatg ctggagacgg ggcgccagaa cttggagcga
      421 gagggcctcg gcgaaagggt gcggttgcgc cacgccgaca tcaggagctt cgacgccgag
      481 ctcgacgagt cccccgacgt cgttagctgc aacttcgccc ttcaccacat gcctgatgag
      541 gacgacgccc gtcgctgcct cgaggcgatc gcccgggtga gggagcgctc cgggtgcgcc
      601 gtgtggatct tcgacttcgc gcgactgcgt aatcctggca cctggcccgc gttttgcacc
      661 ctggtgaact ggcccgggcc ggtggtccac agcgacgcga tcgagagcga gaaggccgcc
      721 ttcagcgagg aggagatggt ccgcctgctc gacgagactg gcctcgcgga cctgaaccat
      781 gtccgctcgc gcccgctgcg cgagcagcag gtgcactggg cgccaggacg agaccgacca
      841 catccgaaca ccgggctgtg gcgcgatgtt cccgtgcctc ccggcgcgcg aactctcgtc
      901 ctcctggccc tggcctcttt tccgcgctcg ctgagctccg tgtaggcgcg ggcgcgatac
      961 gtcgctcccg caaatcccgc gcaagcagca ctcgtgctcg gactgcccgt cgcatggaaa
     1021 gcggtagccg acgtgcgcac ggctttgatg tcgcgggcgt catcacggcg gcggcaacgg
     1081 tagggcgcgc aatgtctcaa catcctgttt cggccctagc cggggccgcc gcgtggcggc
     1141 ggccccgtcg cttgggctag agggtgagcg tgccggttgc gtcgactgag ttgtgggcgc
     1201 ccgccccctt cagggtggcg gtgccgctac ccgtggcgcc ggcgaacacg cccgtgccgc
     1261 cggtcacctc gaacgtgccg gtggcggtga acgggttgcc gaacgacttg agcgacccgg
     1321 gagcttcgtg ggacctgccg gggaagcagg cggtcccttc gacagacagc gtcagcgacc
     1381 cactgccgtc ctgcaagctc acggtcgttt gtgcgtccac cgagacgcaa ccgtttggaa
     1441 gcgggacgag cgcggcggtg ggtactagca ggtagtcggc cgccccgaag ccttccaccg
     1501 tgccggagcc gcagaagaac agcacgctcg ggcagtttgg atgcttggcc gtctgcgtgc
     1561 ccttgaaatg agcttcgagc gggattgtct gcgccgctgc ggtctgcgca gacaacacaa
     1621 gcgccgtcga cgtgatcacg gccaatagag cgatgcgtct cattgcccac ctcccaggtc
     1681 ggtcgaggcg gccgaacctc cctgccggcg accccggggg ttgagcgccg actgtctcac
     1741 ggcgcctctg gcgctgcaac ccatcttgcg ctggccctcg cagagccgat ctcgattacc
     1801 gacgccgcgt gttgctcgtg cgtcgcggca agggcggacg ccgccgcgag gtcggcatgg
     1861 acacatgggg ctgggacgag ctccagcggt ggctcgaacg acgtgtcggg cttccagtcg
     1921 gccctttgtt ctgtgtcctc aacggccgga cgtgtggtcg ccagtggtcg accgccgtcg
     1981 ctcgagctga gctgcggcgc acggccgtcg cagctggggt ccgccgacga ttcgccccgc
     2041 atcagctgcg ccatgcccac gccgtcgaga tggctcgcga gcgcctcgcc gatgtcatgg
     2101 agcagcgcgg ccg
//
LOCUS       DASQWN010000677         3108 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_990416, whole genome shotgun sequence.
ACCESSION   DASQWN010000677 DASQWN010000000
VERSION     DASQWN010000677.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 3108)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3108)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3108
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_990416"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..212
                     /locus_tag="VE686_12700"
     CDS             <1..212
                     /locus_tag="VE686_12700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009755890.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="UDP-3-O-(3-hydroxymyristoyl)glucosamine
                     N-acyltransferase"
                     /protein_id="HYY85345.1"
                     /translation="DFVAVGGQTAIAPHLRLGAGVQIAADAGVMTDVPARGKWGGSPA
                     RPMRHFFREYHTLRKLARTDESGAE"
     gene            246..1502
                     /locus_tag="VE686_12705"
     CDS             246..1502
                     /locus_tag="VE686_12705"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009764038.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008757 - S-adenosylmethionine-dependent
                     methyltransferase activity [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cyclopropane-fatty-acyl-phospholipid synthase
                     family protein"
                     /protein_id="HYY85346.1"
                     /translation="MFPLSHMLTSFVRVGTLKVIDAEGSTHLFGGSPGPSATMKLTDR
                     SLYTKLFLNPELHAGEAYMDGRMSFVEGSTLRDFLTLFSVNRLSLGSYPLQKVLRRVS
                     RGLKRFQQANKVGEAQANVAHHYDLGNDFYRLFLDEGMQYSCAYFTDPGETLEQAQRN
                     KLRLIAAKLRLAPGLKVLDIGSGWGDLALYLAAMEDVDVTGVTLSREQHALSNEKARA
                     AGLAHRVRFELLDYRSMQGRFDRIVSVGMFEHVGVHHYPEFFAQVNALMQDDGLMLLH
                     SIGHMSPPGTASPWLRKYIFPGAYSPALSEVFPVVEQASLWVTDLEFLRVHYADTLRE
                     WHRRFEANREKIAAMYDERFCRMWEFYLISAEMMFRTGSQLVFHMQLARRRDAAPVVR
                     DYVTDTQRRYRELEAERLKPLARGAA"
     gene            1539..2393
                     /locus_tag="VE686_12710"
     CDS             1539..2393
                     /locus_tag="VE686_12710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008191276.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent oxidoreductase"
                     /protein_id="HYY85347.1"
                     /translation="MSLKGKTLFITGASRGIGLAIGLRAAREGANVAIAAKTTEPHPK
                     LPGTIYTAAEAIEEAGGKALPLLVDVRDEEAVATAIERTAETFGGIDIVVNNASAISL
                     TSTPQTDMKRFDLMHQVNTRGTYMVSKYAIPHLERAANPHILMLSPPLDFQEKWFAPH
                     LAYSLAKYGMSLCVLGLAGELRRKGIAVNALWPRSTIATSAIKNLLGGDQIIKASRTP
                     EILADAAALVFAKPSRSFTGNFLIDDTFLAGEGVTDLSGYRVDPSVPLAPDFFVPDGI
                     PVPAGVQA"
BASE COUNT          491 a         1100 c         1043 g          474 t
ORIGIN      
        1 aggatttcgt cgcagtcggc gggcagacgg cgatcgcccc gcacctgcgg ctcggggcgg
       61 gcgtgcagat cgccgccgac gccggcgtca tgacggacgt gcccgcgcgc gggaagtggg
      121 gcggctcgcc ggcgcggccg atgcggcatt tcttccgcga gtaccacacc ctgaggaagc
      181 tggcgcggac ggacgagtcc ggcgccgagt agcgcagtcg tcgaagtcag gtggagaggt
      241 cccggatgtt cccgctgtcg cacatgctga cctccttcgt gcgcgtcggg acgctcaagg
      301 tcatcgacgc ggaaggcagc acgcatctgt tcggaggcag tcccggtccg tccgccacca
      361 tgaagctcac ggaccgctcg ctctacacca agctcttcct caaccccgag ctccacgccg
      421 gcgaagccta catggacggc cgcatgtcgt tcgtggaggg ctcgacgctc cgcgatttcc
      481 tgaccctgtt ctcggtcaac cggctctcgc tcgggtcgta tcccctgcag aaggtcctgc
      541 gccgggtctc gcgcgggctg aagcgcttcc agcaggccaa caaggttggc gaggcccagg
      601 ccaacgtcgc gcaccactac gacctcggca acgacttcta ccgcctcttc ctcgacgagg
      661 gcatgcagta ctcctgcgcg tacttcaccg atcccggcga gacgctcgag caggcgcagc
      721 gcaacaagct ccgcctcatc gccgcgaagc tgcgcctcgc gccggggctc aaggtcctcg
      781 acatcggctc gggctggggc gacctcgcgc tctaccttgc cgccatggag gacgtggacg
      841 tgaccggcgt gaccctgtcg agggaacagc atgcgctgtc gaacgagaag gcccgcgcgg
      901 caggtctcgc gcaccgcgtc cgcttcgagc tcctcgacta ccggagcatg cagggccgct
      961 tcgaccgcat cgtgtcggtc ggcatgttcg agcacgtcgg cgtgcaccat tatccggagt
     1021 tcttcgcgca ggtgaacgcg ctcatgcagg acgacgggct catgctcctg cattcgatcg
     1081 ggcacatgag cccgccgggc acggcgagcc cctggctgcg caagtacatc ttccccgggg
     1141 cctattcgcc ggcgctgtcc gaggtcttcc cggtcgtcga gcaggcgagc ctgtgggtga
     1201 ccgacctcga gttcctgcgc gtgcactacg ccgacacgtt gcgcgagtgg caccgccgct
     1261 tcgaagccaa tcgcgagaag atcgccgcca tgtacgacga gcgcttctgc cgcatgtggg
     1321 agttctacct gatctcggcc gagatgatgt tccgcaccgg cagccagctc gtgttccaca
     1381 tgcagctcgc gcggcggcgc gacgccgcgc cggttgtgcg cgactacgtc accgacacgc
     1441 agcgccgcta tcgcgagctc gaggcagaac gcctgaagcc gctcgcacgc ggggcagcgt
     1501 gacggccgcg atccacggga cagggtaagg ggggccatat gtcgcttaag ggcaagacgc
     1561 tgttcatcac cggcgcgtcg cgcgggatcg ggcttgcaat cggcctgcgc gcagcgcgcg
     1621 aaggcgccaa cgtcgccatc gcggcgaaga cgacggagcc gcaccccaag ctgccgggga
     1681 ccatctacac ggcggcggag gcgatcgagg aggccggcgg caaggcgctg ccgctcctcg
     1741 tcgacgtgcg cgacgaggag gcggtcgcga ccgcgatcga gcgcacggcg gagacgttcg
     1801 gcggcatcga catcgtggtc aacaacgcga gcgccatctc gctaacgtcg acgccgcaga
     1861 ccgacatgaa gcgcttcgac ctcatgcatc aggtcaacac gcgcggcacc tacatggtct
     1921 cgaagtacgc gatcccgcat ctcgagcgcg ccgcgaaccc gcacatcctg atgctctcgc
     1981 cacccctcga cttccaggaa aagtggttcg cgccgcacct cgcctattcg ctcgcgaagt
     2041 acggcatgag cctgtgcgtg ctcgggctcg ccggcgagct ccggcgcaag ggcatcgccg
     2101 tcaacgcgct gtggccgcgc tcgacgatcg cgacgagcgc gatcaagaac ctgctcggcg
     2161 gcgaccagat catcaaggcg agccggaccc ccgagatcct cgccgacgcg gccgccctgg
     2221 tgttcgcgaa gccttcgcgc agcttcaccg ggaacttcct catcgacgac accttccttg
     2281 cgggcgaggg ggtcaccgat ctctcaggct accgcgtcga cccgtcggtc ccgctcgcgc
     2341 ccgacttctt cgtgcccgac gggatcccgg tgcccgctgg ggtgcaggct tgaaggcatg
     2401 cgacgcccgt cggacgacat gcgccgatag ccccgcagcc cttcggggct cgggggtttc
     2461 gctttagctc gggccccctc gggtgaagag aggggcggcg cggggtgcgc cgggacggtt
     2521 ccgcggcgca ggatccgccg cgcgggttcc aagccgcggg cggcagggat ccatctgcgg
     2581 cgtgtgacgc cgcggatggc agggccaggg cccagggcca ggtgcctagc gcaaccctga
     2641 cccggacacc ccgcgctcgg cggcgccttg atccctggcc tcgcgcttcg gctcctcgcg
     2701 tggggagcct taagcgcgtt tccgcgcgga cccacccttc ttgaggatgg gacggacgag
     2761 gccgccgcca aggccggggg caccccctgg aaggtgccgg atccggggag gcgggggacc
     2821 ctgagtgctc ccgggctgtg tcgtcccggg ctcagcgccg catcagaccg aagctcctcg
     2881 cctcgcggcg tctcacctcg acccaccgcc cgagctgctt ccggcctttt gagccggacc
     2941 tccttcgcgc gatgccgccc cacgaccaga cacctccgga ggtgcccctc tgccgggcgg
     3001 gacgcagcac gaaaagcaca aaacaagaac attgtcaaat cgactgaggc agctgcttcc
     3061 tagcgctagc tgtgtgcgac aaccctcccg ggagggaggg gtggggtg
//
LOCUS       DASQWN010000678         3056 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_494772, whole genome shotgun sequence.
ACCESSION   DASQWN010000678 DASQWN010000000
VERSION     DASQWN010000678.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 3056)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3056)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3056
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_494772"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(84..1001)
                     /locus_tag="VE686_12715"
     CDS             complement(84..1001)
                     /locus_tag="VE686_12715"
                     /inference="COORDINATES: protein motif:HMM:NF015411.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050661 - NADP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-binding domain-containing protein"
                     /protein_id="HYY85348.1"
                     /translation="MDKVGFIGLGRMGRGMASNLAKKGFELVVYDINPEPVRSLEALG
                     ARRANGVAGVAQASDVVITMLPASPEVEAAVVGPDGILANGRAGQVIMDMSTVEPKTT
                     DLIAKAAAEKGLSVVDAPVGRLAAHADRGESLFMVGASDADFARVKPMLDAMGTTVHH
                     CGPVGTGIRTKLVNNYLAIILCQLNAEALAMSQRFGLDLTKTLEVCYGTTATNGQLKI
                     NWPNKVLKGDIEPGFTIDLAHKDLSIIIAAANAEKVPLPVAAAAREMFSLARSGKYGQ
                     ADFSAMVDALCDAAGIDKPRVPEGWTPPA"
     gene            complement(1240..1830)
                     /locus_tag="VE686_12720"
     CDS             complement(1240..1830)
                     /locus_tag="VE686_12720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018273281.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0030976 - thiamine pyrophosphate binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine pyrophosphate-dependent enzyme"
                     /protein_id="HYY85349.1"
                     /translation="MSGTTMGLDRREVVRELMKDRGDLVVIAGLGSPGYDLFAAGDHD
                     GNFYLWGAMGGAAMIGLGLAFAQRNRPVLVLTGDGEQLMGLGSLATVAAQKPENLSIV
                     VLDNGHYAETGMQKSHTGLGIDLHRMAEAAGFKAREVVAMQEVAALRREIAQSAGGPR
                     FATIRIGAEDTPRALSERDGVFQKTRFRTHLGIAMP"
     gene            complement(1827..2399)
                     /locus_tag="VE686_12725"
     CDS             complement(1827..2399)
                     /locus_tag="VE686_12725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018270486.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphonopyruvate decarboxylase"
                     /protein_id="HYY85350.1"
                     /translation="MNVEATPPTGGILAGPDSAPAPWQRDVFEVLKAARVRQMSFVPD
                     AGHARLIEMFQADPEVQTTVLSTEEEGVALAAGAWLGGERSVLLMQSSGVGNCINMLS
                     LMETCRFPFLTLVTMRGEWAEFNPWQVPMSRATAPVFEAIGVKVMRVERSEDAAETVE
                     AAAALAFEGEQRLAVLFSQRMLGRKKWVAK"
     gene            2540..>3056
                     /locus_tag="VE686_12730"
     CDS             2540..>3056
                     /locus_tag="VE686_12730"
                     /EC_number="1.1.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019198540.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016616 - oxidoreductase activity, acting
                     on the CH-OH group of donors, NAD or NADP as acceptor
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidinol dehydrogenase"
                     /protein_id="HYY85351.1"
                     /translation="MARWLKRGRDAAAVAAEDAKVRATVEEILADIAKRGDAAVRELS
                     QKFDRWDREDYRLTDAEIRDCLSQLRPRDIEDIKFAQEQVRNFAEHQRAAMKDVEVET
                     LPGVVLGHKNIPVNSVGCYVPGGKYPLLASAHMSVITARVAGVPRVITCAPPFEGRPA
                     PAIVAAQHLAGA"
BASE COUNT          455 a         1114 c         1042 g          445 t
ORIGIN      
        1 ccgaggcccc gcgccgcgcc ggtcaccacc gcggccttgc cgacgaaacg cttcagctgt
       61 tcagccatga cagaccctcc tcctcaagcc ggcggcgtcc agccctcggg cacgcgcggc
      121 ttgtcgatgc cggccgcgtc gcagagcgcg tcgaccatgg ccgagaaatc ggcctggccg
      181 tacttgcccg agcgggcgag cgagaacatt tcgcgggccg cagcggcgac gggcagcggc
      241 accttctcgg cgttcgccgc cgcgatgatg atcgacaggt ccttgtgggc gaggtcgatg
      301 gtgaagcccg gctcgatgtc gcccttcaga accttgttcg gccagttgat cttcagctgc
      361 ccgttggtcg ccgtggtgcc gtagcagacc tccagcgtct tggtgaggtc gagcccgaag
      421 cgctgcgaca tggccagcgc ctcggcattg agctggcaca ggatgatggc gaggtagttg
      481 ttgacgagct tggtgcggat gccggtgccg accgggccgc agtggtgcac cgtcgtgccc
      541 atggcgtcga gcatgggctt cacgcgcgcg aaatccgcat ccgaggcgcc gaccatgaac
      601 agcgactcgc cccggtccgc gtgcgccgcg aggcgcccga cgggcgcatc gacgaccgac
      661 aggcccttct cggccgcggc cttggcgatg aggtccgtcg tcttcggctc gacggtcgac
      721 atgtccatga tcacctggcc ggcgcggccg ttcgccagga tgccgtccgg cccgacgacc
      781 gccgcctcca cctcgggcga ggcgggcagc atggtgatca ccacgtccga ggcctgcgcc
      841 acgcccgcga cgccgttggc gcgtctcgct ccgagcgcct ccagcgaccg cacgggctcc
      901 gggttgatgt cgtagacgac cagctcgaag cccttcttcg ccaggttcga ggccatgccc
      961 cgccccatgc gcccgagccc gatgaaaccg accttgtcca tggtgtttcc ctgcactgaa
     1021 ccgagctagc gcataagccc agcggtcacc cgatgtcgag caggcgccgc gtcctccctc
     1081 cccgcgaggg gagggcggag acgggagcgt cagcgcccgc ccgggtgggg cggaaccagg
     1141 gtgccgctta cctgaagcac cgtggttccg ccccaccccg gtcgcgcctg caggcgcgac
     1201 tcgccctccc ctcgcgggga gggatcgcgc gccgaccgct cacggcatcg cgatgccgag
     1261 gtgggtgcgg aagcgcgtct tctggaacac gccgtcgcgt tcggagaggg cgcgcggcgt
     1321 gtcctcggcg ccgatgcgga tggtggcgaa gcgcgggccg ccggcgctct gcgcgatctc
     1381 ccgtcgcagc gccgcgacct cctgcatggc gacgacctcg cgcgccttga agcccgccgc
     1441 ttccgccatg cggtgcaggt cgatgccgag ccccgtgtgg ctcttctgca tgcccgtctc
     1501 ggcgtagtgg ccgttgtcga gcaccacgat ggagaggttc tccggcttct gcgccgcaac
     1561 ggtcgcgagg ctgccgaggc ccatgagctg ctcgccgtcg ccggtcagca ccagcacggg
     1621 gcggttgcgt tgcgcgaagg cgaggccgag gccgatcatg gccgcgccgc ccatggcgcc
     1681 ccagagatag aagttgccgt cgtggtcgcc cgccgcgaac aggtcgtagc cgggcgagcc
     1741 gaggccagcg atgaccacca gatcgccgcg gtccttcatc agctcgcgca ccacctcgcg
     1801 gcggtcgagc cccatcgtcg tcccgctcat ttcgccaccc acttcttgcg cccgagcatg
     1861 cgctgcgaga acaacacggc gagccgctgc tcgccctcga aggcgagcgc ggccgcggcc
     1921 tcgaccgtct cggccgcgtc ctcggagcgc tccacccgca tgaccttgac gccgatcgcc
     1981 tcgaacaccg gcgcggtggc gcgcgacatc ggcacctgcc acggattgaa ctcggcccac
     2041 tcgccccgca tggtgacgag ggtcaggaac ggaaaccggc acgtctccat cagcgacagc
     2101 atgttgatgc agttgccgac gccgctcgac tgcatcaaga gcaccgaacg ctcgccgccg
     2161 agccacgcgc cggccgccag cgccacgccc tcctcctcgg tcgacagcac cgtcgtctgc
     2221 acttccgggt cggcctggaa catctcgatc agccgcgcat gccccgcgtc cggcacgaac
     2281 gacatctgcc gcaccctggc ggccttcagc acctcgaaga cgtcccgctg ccaaggcgcg
     2341 ggggccgagt ccggcccggc gaggatgccc cctgtcggcg gcgtcgcttc cacattcatt
     2401 cgcgttcgat ccttcaggcg acgttgtaag cgggccgcga cctaatcagg ttcgaagcga
     2461 cggcgaaagg ccctcccgcg cacccctctc ccgtgcggaa gaggggggtg ctaagaccga
     2521 cccaaagagg agacacgcca tggcgcggtg gctgaagcgg gggcgggatg cggcggcggt
     2581 ggcggcggag gacgccaagg tgcgcgccac cgtcgaggag attctcgccg atatcgccaa
     2641 gcgcggcgac gcggccgtgc gcgagctctc gcagaaattc gacaggtggg accgcgagga
     2701 ctaccggctc accgacgccg agatccgtga ctgcctctcc cagctgcggc cgcgggacat
     2761 cgaggacatc aagttcgcgc aggagcaggt ccggaacttc gccgagcacc agcgcgcggc
     2821 gatgaaggac gtcgaggtcg agacgctgcc gggcgtggtc ctcgggcaca agaacatccc
     2881 ggtcaactcc gtcggctgct acgtgccggg cggcaagtac ccgctgctcg cctcggcgca
     2941 catgtcggtg atcacggcgc gcgtcgccgg cgtgccgcgc gtgatcacct gcgcgccgcc
     3001 gttcgaaggc aggccggcgc cggcgatcgt cgcggcacag catctggccg gcgccg
//
LOCUS       DASQWN010000679         2166 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_892457, whole genome shotgun sequence.
ACCESSION   DASQWN010000679 DASQWN010000000
VERSION     DASQWN010000679.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2166)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2166)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2166
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_892457"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1113)
                     /locus_tag="VE686_12735"
     CDS             complement(<1..1113)
                     /locus_tag="VE686_12735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003600462.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003918 - DNA topoisomerase type II
                     (double strand cut, ATP-hydrolyzing) activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006265 - DNA topological change [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA gyrase subunit A"
                     /protein_id="HYY85352.1"
                     /translation="MGKPVNPPPPEGVESINLKEALEERYLAYALSTIMHRALPDARD
                     GLKPVHRRILHAMRLLRLNPGDAYKKCARIVGDVIGKYHPHGDQAVYDALVRLAQDFA
                     QRYPLVDGQGNFGNIDGDNAAAYRYTEARLTEVARLLLEGIDEDAVDFRDTYNGEDEE
                     PIVLPAAFPNLLANGSQGIAVGMATSIPPHNAAELCDAALYLVSHPKATSEQLLTFVP
                     GPDFPTGGIIVDGKEAIAETYRTGRGSFRVRAKWTKEDLGRGTWAVVVTEIPYGIPKS
                     RLIEKIAELLHERKLPLLADVRDESTDEVRVVFEPRARTVDPVILMESLFKLTELESR
                     VPMNVNVLAGGKVPKVLSLAECLREWLDHRREVLIRR"
     gene            complement(1262..1993)
                     /gene="recO"
                     /locus_tag="VE686_12740"
     CDS             complement(1262..1993)
                     /gene="recO"
                     /locus_tag="VE686_12740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010685987.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RecO"
                     /protein_id="HYY85353.1"
                     /translation="MHWSDEGLVLGARRHGETSIILELMTREHGRHLGLVHGGRSKRM
                     QPVLQPGNSVQATWRARLDENLGVYAVEAGDLRAARYLASAIALYGMATMATLLRLLP
                     ERDPHPRLYDAASVLADHLADADLAPALFVRFEVALLAELGVGLDLASCAATGSTQDL
                     IYVSPKSGRAVGRDPGDPYKDRLLTLPPFLRGRPEGNEPTAAEVEAGFALTSFFLGQH
                     VFSPRGIGEPEERVRFVALATRRAG"
BASE COUNT          341 a          721 c          771 g          333 t
ORIGIN      
        1 gcggcggatc agcacctccc ggcgatgatc gagccattcg cgcaggcatt cggccaggct
       61 gagcaccttg ggcaccttgc cgccggcgag cacgttcacg ttcatgggta cgcggctctc
      121 gagctcggtg agcttgaaca gcgattccat taggatgacc gggtccaccg tccgggcgcg
      181 cggctcgaac acgacgcgca cctcgtccgt cgactcgtct cggacgtcgg cgagcagcgg
      241 gagcttgcgc tcgtggagca gctccgcgat cttctcgatc agccgggact tcgggatgcc
      301 gtaagggatt tccgtgacta cgaccgccca ggtgccacgg ccgagatcct ccttggtcca
      361 cttggcccgg acgcggaacg agccgcggcc ggtgcgatag gtctcggcaa tcgcctcctt
      421 gccgtcgacg atgatgccgc ccgtcgggaa gtcggggccg ggcacgaagg tgagaagctg
      481 ctccgacgtc gccttggggt gcgacacgag gtagagggcc gcatcgcaca gctccgcggc
      541 gttgtgcggc ggaatcgagg tcgccatgcc gaccgcgata ccctgggaac cgttggcgag
      601 caggttcgga aaggcggccg ggagcacgat cggctcctcg tcctcgccgt tgtaggtgtc
      661 gcggaaatcg acggcgtcct cgtcgatgcc ctcgagcagg agccgcgcga cctcggtcag
      721 ccgcgcctcc gtgtagcggt aggcggcggc gttatcgccg tcgatgttgc cgaagttgcc
      781 ctgcccgtcg acgaggggat accgctgcgc gaagtcctgg gcgaggcgca cgagcgcgtc
      841 gtagaccgcc tggtccccgt gcgggtggta cttaccgatg acgtcgccga cgatgcgggc
      901 gcatttcttg taggcgtcgc cgggattcag ccgcagcagg cgcatggcgt gcaggatgcg
      961 gcgatggacg ggcttgaggc cgtcgcgcgc atccggaagc gcgcggtgca tgatcgtcga
     1021 gagcgcgtag gccaggtagc gctcctcgag cgcctccttc aggttgatgc tctccacgcc
     1081 ctccggcggg ggcgggttga cgggctttcc catccaagga ctccaaagcg gctccgtcct
     1141 gcgacgggag cctgcagatt atccgcccgg cgcaggccaa aggccggcat cgcgcggcgg
     1201 tgcacagctg aatcgtctca cggcagcgtg cttgtgcccg acgaacaaac cagaaacaag
     1261 cctatccggc ccgcctcgtc gcgagtgcga cgaaacgcac ccgctcctcc ggctcgccga
     1321 tgccccgcgg cgagaaaacg tgctggccga gaaagaacga cgtcagggcg aagccggcct
     1381 cgacctccgc cgccgtcggc tcgtttccct cgggcctgcc ccgaaggaac ggcggcaggg
     1441 tgagcagcct gtccttgtag gggtcccccg ggtcgcggcc gaccgcgcgg cccgacttcg
     1501 gggaaacata gatcaggtcc tgggtcgagc cggtcgcggc gcagctcgcg aggtcgaggc
     1561 cgacaccgag ctcggcgaga agcgccacct cgaagcgcac gaacagcgcc ggcgccagat
     1621 ccgcgtcggc gagatggtcg gccagcacgg aggccgcgtc gtataggcgc gggtgcggat
     1681 cccgctcggg caggagacgc aggagggtcg ccatggtggc catgccgtag agtgcgatcg
     1741 ccgaggcgag atagcgcgcc gcccgcaggt caccggcctc cacggcgtaa acgccaaggt
     1801 tctcgtcgag ccgggcgcgc cacgtcgcct ggacggagtt cccgggctgc agcacgggct
     1861 gcatgcgttt cgagcggccg ccgtggacga gccccaggtg gcgtccgtgc tcacgcgtca
     1921 tcagctcgag gatgatgctc gtctcgccgt gcctgcgggc gccgaggacg aggccttcgt
     1981 cggaccagtg catgagacag agcgccgcct cgggcgccaa gcgccacaaa atatcctcat
     2041 ccctatgacc cttggcgccc gccttggcca gtcacctggc gcgacagcga cagggtcgcg
     2101 cgatgccggg gctttggatc gggtcgtgcc acggcagcag gtcacgtccg agtgcgtagg
     2161 agttgt
//
LOCUS       DASQWN010000680         2059 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_567520, whole genome shotgun sequence.
ACCESSION   DASQWN010000680 DASQWN010000000
VERSION     DASQWN010000680.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2059)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2059)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2059
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_567520"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(700..1845)
                     /locus_tag="VE686_12745"
     CDS             complement(700..1845)
                     /locus_tag="VE686_12745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012553902.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IS110 family transposase"
                     /protein_id="HYY85354.1"
                     /translation="MVISITQSPSVSSLNATLLVALELSKATWVVALSAPFSDRISHH
                     SIAGGDAGALLKLIGQARSRAEAALGQPVRVVCCYEAGYDGFWLHRVLSANGIDNHVL
                     DAASLLVNHRARRVKTDRIDVDGLIRALAALMRGEHHACRAVHIPSIEDEDRRRQTRE
                     RERLIGERTAHVNRIKGLLMAQGIRDFMPMRPNAAERLTELRTGDGRPLPPCLVAEIR
                     RELRRLKLVEEMIGEVETERDSVGAGTVADQRIALLRQVKGIGPVAATVLGREVFHRE
                     FTNRRELASYLGLTPSPWASGSVQLDQGISKAGNARARTILIEIAWLWTRYQPGSRLA
                     GWFRERVGQTKGRLRRILVVALARKLAVALWRYLSTGVIPEGVELRA"
BASE COUNT          360 a          694 c          648 g          357 t
ORIGIN      
        1 aatgcagtac tgcaatgtaa acagcatcgg cgaaactgac cttgccccga tgcagcgcct
       61 tccatagcgc ctgatttatg ccaccaatgc attttgctgg cgacgccaat tttcctcgaa
      121 cgccattgga ctcgtgtagc ccaggatcga atacatcctt tttccgattg tacaacgaag
      181 gttactgccc aggtaacggg actttcgaga ctttgggttc ttccgcactc atatgaggaa
      241 accccggtca agagcagaaa tccaaagttc tgtccctttg ttcgactggc acgaccgtcc
      301 cttcgtcccg acctgtccgc atgttgagca tcgcgcgcag cggcaggcaa ggctggcccg
      361 tcagggccac cgccgcaggc ggcctggcct tgccggagcg agcacgatgc tatcctgccc
      421 gaggtcggaa gctgcgatcg cggccgatcg tgccgaaagc gggtctccca tcggacgcgg
      481 cggaaaaggc gccgcggcaa ctcatatccg gtcggccacc gtggtgaccg gacccagctt
      541 ccccgtgcgt cggctcgagg cttgggggag gcccggaagg gcgggaccca tcttttgcgg
      601 cggcgtcttg cagccctgtg cggaaacggt cgcgcgcccc tctcggctcg tcggcggcca
      661 acgaccgcct gttcagtatc ctctcggcag cagctggttt caggcccgga gttcgacccc
      721 ctccgggatc acgccggtgc tcagatatct ccacagcgca acagccagct tacgggccag
      781 cgccacgacc aggatccggc gcagccgccc cttggtctga ccgacgcgct cccggaacca
      841 gcccgccaga cggctgcccg gctggtagcg ggtccacagc caggcgatct cgatcaggat
      901 ggtgcgcgct cgggcgttgc ccgccttgct gatgccttgg tcgagctgga ccgaaccact
      961 cgcccacggg ctgggcgtca gaccgaggta ggaggccagt tcccggcggt tggtgaactc
     1021 gcggtggaac acctcgcggc cgagcacggt tgcggcgacc gggccgatcc ccttgacctg
     1081 gcgcagcagg gcgatgcgct ggtcggcaac ggtgccagcc ccgacgctgt cgcgctcggt
     1141 ctcgacctcg ccgatcatct cctcgaccag cttgaggcgc cgaagctcgc gccggatctc
     1201 ggcgaccagg catggcggca gggggcgacc gtcaccagta cgcagttcag tcaggcgctc
     1261 cgccgcattc ggccgcatcg gcatgaagtc ccggatgccc tgagccatca gaaggccctt
     1321 gatgcggttg acgtgagcgg tgcgctcgcc gatcagacgc tcgcgttcgc gggtctggcg
     1381 ccggcgatcc tcgtcctcaa tggagggaat gtgcaccgcg cggcaagcgt ggtgttcgcc
     1441 gcgcatcagg gctgccagcg cccggatcaa gccgtcgaca tcaatgcggt cggtcttgac
     1501 ccggcgcgcc cgatggttga ccagcaggct ggcggcgtcg agcacatggt tgtcgatgcc
     1561 gttggcgctc aggacgcggt gcagccagaa gccgtcgtag cctgcttcgt agcagcagac
     1621 cacccggacc ggctgcccga gcgccgcttc ggcccggctg cgggcttgtc cgatcagctt
     1681 gagcagggcg ccggcatcgc cacccgcaat cgagtgatga ctgatccggt ctgaaaacgg
     1741 agcgctgagg gcgaccaccc aggtggcctt cgataattcc agcgcgacca gaagggtggc
     1801 gttcaaggag gagacgctcg gggattgggt gatcgaaatc accatgacaa tcctccgtga
     1861 agcaagacaa tcacgcctca aaatgtgcca aatcccgcct ttcctgtcgc ctcatagcat
     1921 ctttgacatg ctccccgtgc aacacgccga cccgcattca gtatcacgct gcgcgagcct
     1981 cgactggaac aatgggcggc aaccggacca tgaagaccga gcccttgccc ggctcgctcg
     2041 ccgcgtcaat gtcgccgcc
//
LOCUS       DASQWN010000681         2243 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_370679, whole genome shotgun sequence.
ACCESSION   DASQWN010000681 DASQWN010000000
VERSION     DASQWN010000681.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2243)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2243)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2243
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_370679"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1010)
                     /locus_tag="VE686_12750"
     CDS             complement(<1..1010)
                     /locus_tag="VE686_12750"
                     /inference="COORDINATES: protein motif:HMM:NF024589.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HYY85355.1"
                     /translation="MAGRRLSVLLGRADERELLDRLLENVRAGQSAVLVVRGEAGVGK
                     TALLHYCARQASGFRVARIAGVESEMELPFAGLHQLCAPVLGRLGALPEPQQVALGVA
                     LGLSSGPAPDRFLVGLAALGLLAEVAAERPLLCLVDDAQWLDGASGQVLGFVARRLLA
                     ESVAIVFGLRDPTRGRELSGLPELRLAGLPENDARALLATVIPGRLDERVRDRLIAET
                     RGNPLAILELPRGLAATQLPGAFGLAGAHALSGRIEESFLRRLEALPEETRLLLLVAA
                     AEPVDDPLLVWRAAERLGIGLSAATADETEGLLVIGEHVAFLHPLVRSAVYRSASLGE
                     RRA"
     gene            1110..1595
                     /locus_tag="VE686_12755"
     CDS             1110..1595
                     /locus_tag="VE686_12755"
                     /inference="COORDINATES: protein motif:HMM:NF012334.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HYY85356.1"
                     /translation="MAVVTGGSRGAGRDIARGLGSRSYAIVVVYLRDQGEAEAAVEEI
                     VAANGTALAVRANVTDELDVERLFDETKAAFGGVDVVVHAAMCATSVVNHQAAPVPSW
                     RRDRRCLQLLTITPDLAHQLRAPRDHGNGFTAGLEPPGADHHTAELIALLDHWRGSPG
                     Q"
BASE COUNT          393 a          829 c          743 g          278 t
ORIGIN      
        1 gcccggcgct caccgagcga cgccgatcga tagaccgccg accgcaccaa cggatggagg
       61 aacgcgacat gttcgccgat caccaacaac ccttcggtct cgtccgcagt cgcagcagag
      121 agcccaatgc ccaggcgctc ggccgcgcgc cacaccagca gagggtcgtc gacgggctcc
      181 gctgcagcga cgagcaggag cagacgcgtc tcctccggga gcgcctcgag ccgccgcaga
      241 aaactctcct cgatccgccc ggacaacgcg tgcgcccccg ccagcccaaa cgcgcccggc
      301 aactgcgtcg cggccaaccc gcgcggcaac tcgaggatcg ccagcggatt gccgcgcgtc
      361 tccgcgatga gccggtctcg aacgcgctcg tcgagacggc ccgggattac cgtcgccagc
      421 agggcgcgcg cgtcgttctc agggagcccc gcgagcctga gctccggcag ccccgacagc
      481 tcgcgcccgc gggtcgggtc gcgcagcccg aacacgatcg ccaccgactc ggccagcaac
      541 cgtcgggcga cgaatccgag gacctgaccc gaggcgccgt cgagccactg ggcgtcatcg
      601 acaagacaca gcagcggccg ctccgcggca acctcggcca acaggccgag cgcggccagg
      661 ccgaccagga agcggtccgg agctggacca gacgacagcc ccagcgcgac gcccagcgcg
      721 acctgctgcg gctcgggaag cgcgccgagc cggcccagca ccggcgcgca gagctgatgc
      781 agtccggcaa acggcaactc catctcggac tcgaccccgg cgatcctggc gacgcggaaa
      841 ccggatgcct gccgcgcgca gtagtgcaag agcgccgtct tgccgacgcc cgcctcgcca
      901 cggacgacca ggaccgcgct ctggccggcg cggacgttct ccaacagccg gtcgagcagc
      961 tcgcgctcgt cggctctgcc cagcaacacc gacagacggc gcccggccat ccgctaaccc
     1021 taaacgacca gggatggcgt ccccgggaat ccactggtgc gaccgccggc gatcgaggcg
     1081 agggttgctg cgtgtcacga accgacccag tggcggtcgt caccggcggc tcgcgcgggg
     1141 ccggccgcga catcgcgcgg ggactcggga gccggagcta cgccatcgtg gtggtctacc
     1201 tgcgcgacca gggtgaagcc gaggccgcgg tcgaggaaat tgtcgccgcg aacggcacgg
     1261 cgctcgccgt gcgcgccaac gtcaccgacg agctcgacgt cgagcgactc ttcgacgaga
     1321 cgaaagccgc gttcggcggt gtcgacgtcg tcgtgcacgc cgcgatgtgc gccacctccg
     1381 tggtcaatca tcaggccgcg ccagttccgt catggcggcg cgatcgtcga tgtctccagc
     1441 tgctaaccat cacacctgac ctcgcccacc agctgcgtgc cccgcgagat cacggcaacg
     1501 ggttcacggc cggattggag ccacccggcg ccgaccacca caccgccgaa ctcatcgcgc
     1561 tcctggacca ctggcggggc agcccagggc agtgacaagg gcagacgagg ggcgcgaagc
     1621 atggccgcag cccgactttg atccagcaaa cgcggcctgg ggaggtctct catgagcggt
     1681 acacagctga gcaatgacac cgcgacggag ccggccgggg ccgtggctct cccgacgcgg
     1741 ctcgaggttg tggtcgttcc cgtcgccgac gtcgagcgcg ccaagagctt ctacgcgaca
     1801 gctggaacgt cgccgcggcg tcggcctgcg ggacgtggcc gtagtgccgg ccttcttgac
     1861 cgactccggc gaggactccg ccaacgatcg acgtcccgac gctgctcgtg catcgactgc
     1921 ggacctggtg ctgccgatcg acgcaaccgg tccgccgcat gcacgccgcg cttcacgacg
     1981 cgcgtgacgt cgagttcgag ggcggccggc acggatgctc gccgggcacg ccaccgacat
     2041 caacgcgagc cgctgtcgcg cgaacgggag acgagatgcc acgcatctcc cgaaacgcga
     2101 gtaatagacc gcaaactgcg gactgttgcc cagcgcagag gaggtgaaaa accccaggtt
     2161 ctccagcggt ttccttgtcg ttcgaggctt tcggccgcac gactgaaaat cgtggtgtcc
     2221 ccggttcgag tccgggtctc gcc
//
LOCUS       DASQWN010000682         2995 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_569270, whole genome shotgun sequence.
ACCESSION   DASQWN010000682 DASQWN010000000
VERSION     DASQWN010000682.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2995)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2995)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2995
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_569270"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..958)
                     /gene="glf"
                     /locus_tag="VE686_12760"
     CDS             complement(<1..958)
                     /gene="glf"
                     /locus_tag="VE686_12760"
                     /EC_number="5.4.99.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012330091.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008767 - UDP-galactopyranose mutase
                     activity [Evidence IEA];
                     GO_process: GO:0009273 - peptidoglycan-based cell wall
                     biogenesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-galactopyranose mutase"
                     /protein_id="HYY85357.1"
                     /translation="MYDWLIVGAGFAGSVLAERLATERNERVLLIDRRPHVGGNAYDR
                     YDESGLLIHQYGPHIFHTNSKQIFDHLSKFTEWRPYEHKVLAEVDGQQVPIPINLDTI
                     NKLYGLNLTSDELEGWFAERAEHVDEIRTSEDVVVSKVGRELYEKFFRGYTRKQWGLD
                     PSELDKSVTARVPTRTNRDDRYFGDEFQFMPKHGYTRMFERMLAHPNINILLQTDYRD
                     VKDVIPHRRVIYCGPIDEYFDFRFGKLPYRSLKFEHVTLDKAWHQPVAVINYPQTNAY
                     TRVTEYKYLTGQEHAKTALTYEYPSAEGDPYYPVPKPENQELF"
     gene            complement(965..2179)
                     /locus_tag="VE686_12765"
     CDS             complement(965..2179)
                     /locus_tag="VE686_12765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009493342.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 1 protein"
                     /protein_id="HYY85358.1"
                     /translation="MHERLTPVSPASLAGASDEKAPLLVCFSHLRWDFVWQRPQHLLS
                     RAAKQYRVLVIEEPMYEDGIAPTMDISRRPGPVTIAVPKLPTGLSEADVILAQRALVE
                     KLIGREAREPRVFWYYTPMAMAFSSRLECDLCVYDNMDELSAFNGASPELLELEADLF
                     SRADLVFTGGMSLYEAKRSRHHNVHGFPSSIEFEHFVQARRFGGPEPHDQAGIPHPRL
                     GFFGVIDERMDVELVGQVAALRPDWHFVMLGPVVKIDPAVLPRRDNIHWLGSKGYKDL
                     PRYLATWDVGFMPFALNEATRYISPTKTPEFLAAGVPVVSTAITDVVRPYGDKGLVEI
                     ARTAEEVALKAEALLSRPKEPWLARVDRHLAAGSWDKTWSSMQRLMSNLMDGTASERP
                     ALPGYVSTTPAE"
     gene            complement(2565..>2995)
                     /locus_tag="VE686_12770"
     CDS             complement(2565..>2995)
                     /locus_tag="VE686_12770"
                     /EC_number="4.1.99.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012752516.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0009228 - thiamine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="phosphomethylpyrimidine synthase ThiC"
                     /protein_id="HYY85359.1"
                     /translation="YVTPKEHLGLPNKQDVRDGIITYKIAAHAADLAKGHPAAQLRDD
                     AVSRARFDFRWEDQFNLSLDPDTARAYHDETLPKDAHKVAHFCSMCGPKFCSMKITQD
                     LRAEVQEMEAAKLAEAEAGMQAKSAEFLAGGGKLYVDAAE"
BASE COUNT          477 a          924 c         1068 g          526 t
ORIGIN      
        1 tgaacagctc ctggttctcg ggtttcggca ccggatagta ggggtcgcct tcggcggacg
       61 ggtactcgta ggtcagcgcc gtcttggcgt gctcctggcc cgtgaggtac ttgtactcgg
      121 tgacgcgcgt gtaggcgttg gtctgcgggt agttgatgac cgcgacgggc tggtgccacg
      181 ccttgtcgag cgtgacgtgc tcgaacttca gcgaccggta cggcagcttg ccgaagcgga
      241 agtcgaaata ctcgtcgatg gggccgcagt agatgacgcg acggtgcggg atgacgtcct
      301 tcacgtcgcg atagtcggtc tgcaggagga tgttgatgtt cgggtgcgcg agcatgcgct
      361 cgaacatgcg cgtgtagccg tgcttcggca tgaactggaa ctcgtcgccg aagtagcggt
      421 cgtcgcggtt ggtgcgcgtc ggcacgcgcg ccgtcacgga cttgtcgagc tcggaggggt
      481 cgagacccca ttgcttgcgg gtatacccgc ggaagaactt ttcgtagagc tcgcgcccga
      541 ccttcgacac cacgacgtct tcggacgtgc ggatctcgtc gacgtgctcg gcgcgctcgg
      601 caaaccagcc ctcgagctcg tccgaggtga ggttcaggcc gtacagcttg ttgatcgtgt
      661 cgaggttgat cgggatcggc acctgctggc cgtccacctc ggcgagcacc ttgtgctcgt
      721 aggggcgcca ctcggtgaac ttcgacaggt ggtcgaatat ctgcttcgag ttggtgtgga
      781 agatgtgcgg cccgtactgg tggatcagaa ggccggactc gtcgtagcgg tcgtaggcgt
      841 tgccgccgac gtgcggccgc cggtcgatga ggaggacgcg ctcgttgcgc tcggtcgcga
      901 ggcgctcggc gaggacgctg ccggcaaagc ccgcgccgac gatcaaccag tcatacatgt
      961 acgcttactc cgcaggggtg gtgctgacgt agccgggaag cgcgggccgc tcggaagccg
     1021 tcccgtccat gaggttcgac atgagcctct gcattgagga ccaggtcttg tcccacgagc
     1081 ctgccgcgag gtgccggtcg acgcgcgcga gccacggctc cttcggacgc gacaagaggg
     1141 cctcggcctt gagggccacc tcttcggcgg tcctggcgat ctcgacgagg cccttgtcgc
     1201 cgtacgggcg cacgacgtcg gtgatcgccg tcgagaccac cgggacgccg gctgcgagga
     1261 attcgggcgt cttcgtcggg ctgatgtagc gcgtcgcctc gttgagggcg aaaggcatga
     1321 agccgacgtc ccacgtcgcg agatagcgcg gcaggtcctt gtagcccttc gatcccagcc
     1381 agtggatgtt gtcgcgccgc ggcagcacgg cgggatcgat cttcaccacg ggcccgagca
     1441 tgacaaagtg ccaatccggg cgaagcgccg cgacctgacc cacgagctcc acgtccatgc
     1501 gctcgtcgat gacgccgaag aacccgagcc tcgggtgcgg gatgccggcc tggtcgtgcg
     1561 gctcgggacc gccaaaccgg cgcgcctgga cgaagtgctc gaactcgatg ctcgacggga
     1621 agccgtggac gttgtggtgg cggctgcgct tggcctcgta gaggctcatg ccgccggtga
     1681 agacgaggtc ggcgcgggag aagaggtcgg cctcgagctc gagcagctcc ggcgacgcac
     1741 cgttgaatgc cgagagctcg tccatgttgt cgtagacgca gaggtcgcac tcgaggcggc
     1801 tcgagaacgc catcgccatc ggcgtgtagt accagaacac ccgcggctcc cgcgcctcac
     1861 gtccgatcag cttctcgacg agcgcgcgct gggccaggat cacgtcggcc tccgacaggc
     1921 cggtcggcag cttcggcacc gcgatggtga ccggaccggg ccgacggctg atgtccatgg
     1981 tgggcgcgat gccgtcctcg tacatcggct cctcgatcac gagcacgcga tactgcttgg
     2041 cggcccggct caggaggtgc tgcgggcgct gccaaacgaa atcccagcgc agatgcgaga
     2101 agcagacgag gaggggagct ttttcgtccg acgcgccggc gagagaggcg ggtgaaacgg
     2161 gcgtcagacg ctcatgcatt ggacaatcct tgggctccag gcacgcttca tcgttcgggc
     2221 gtgaggcgcc cgctgaaacg gtccgaaaaa cgtatccttg aatcggcgga aagttggcga
     2281 ggcactcgcc ggcgcgatca gcgaaacaac gccatgggtg ccctttcggt tcccaagtca
     2341 atgatcctca gaggggctca gagagggccc tccgcagcga cgagatgcct caagcgggac
     2401 ccgaatcttg ggccgagcga gcgagtgcgc ggcagctcgc gcgcggctcg tgatgagggt
     2461 gcgcggtcgc acgccggtca tggtgatcgg cgcgcgccgg cccgccctca gcaaagcacg
     2521 caggagagcg gggccggcgc gatcagcacg acgatgcgcg ggtgctactc cgccgcgtcg
     2581 acgtagagct tgccgcctcc ggccaggaac tccgcgctct tcgcctgcat gccggcttcc
     2641 gcctcggcga gctttgcggc ctccatctcc tgcacctcgg cgcgcaggtc ctgcgtgatc
     2701 ttcatcgagc agaacttcgg gccgcacatg gagcagaagt gggcgacctt gtgggcgtcc
     2761 ttgggcaagg tctcgtcgtg gtaggcgcgg gccgtgtcgg ggtcgaggga gaggttgaac
     2821 tggtcctccc agcggaagtc gaagcgggcc cgtgacaccg catcgtcgcg cagctgcgcc
     2881 gccgggtggc ccttggcgag gtccgcggcg tgcgcggcga tcttgtaggt gatgatgccg
     2941 tcgcgcacgt cctgcttgtt cggcagaccg aggtgttcct tcggcgtcac gtagc
//
LOCUS       DASQWN010000683         3576 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_372005, whole genome shotgun sequence.
ACCESSION   DASQWN010000683 DASQWN010000000
VERSION     DASQWN010000683.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 3576)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3576)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3576
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_372005"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(14..283)
                     /locus_tag="VE686_12775"
     CDS             complement(14..283)
                     /locus_tag="VE686_12775"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY85360.1"
                     /translation="MKKIISATLAGALALSVAACNTPGERALGGAAIGGLAGAAVGGA
                     ATGRAGGALAGAAVGATGGAIVGAATAPQCPSGTYRDVYGNIYCR"
     gene            471..861
                     /gene="rnpB"
                     /locus_tag="VE686_12780"
     ncRNA           471..861
                     /ncRNA_class="RNase_P_RNA"
                     /gene="rnpB"
                     /locus_tag="VE686_12780"
                     /product="RNase P RNA component class A"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00010"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00010"
     gene            1232..2281
                     /gene="rsmH"
                     /locus_tag="VE686_12785"
     CDS             1232..2281
                     /gene="rsmH"
                     /locus_tag="VE686_12785"
                     /EC_number="2.1.1.199"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009764002.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016434 - rRNA (cytosine)
                     methyltransferase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (cytosine(1402)-N(4))-methyltransferase
                     RsmH"
                     /protein_id="HYY85361.1"
                     /translation="MNRRRQPTPVATGEPTGHVPVLLTEVLEALDAKRGGTFVDGTFG
                     AGGYTKALLDAEPLNRVIAVDRDPDAIAAGEPLVAAAHGRLVLAPGRFGELDGIAQGL
                     GIASADGVVLDIGVSSMQLDQAERGFSFRHDGPLDMRMERDGPSAADIVNGAPEAELA
                     DIFYHYGEERRARAVARAIVETRRRAPIATTRELADLAAGLIRAEPGGAHPATRVFQA
                     LRIAVNDELGELVRALHAAERLLGVGGRLAVVTFHSLEDRIVKQFFAARTGRTPGASR
                     HVPSAGSGSKPSLAAVTRGPMTASDAEVAANPRSRSAKLRVAERTDAPLPPPLESVLA
                     LAELPATAEKGRGRR"
     gene            2281..2679
                     /locus_tag="VE686_12790"
     CDS             2281..2679
                     /locus_tag="VE686_12790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009764003.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY85362.1"
                     /translation="MVRVLHMLAIGGLIGSAAYAYSIKYETLYHSEQVAKLKTKVQRE
                     RDSIAVLRAEWQHLNRPDRLQAAVERHLDVQPTSIKQLARLADVPNRPPRSDEIGRKL
                     EALLLAGATATPKDKRTPDPRTTGTTTPKR"
     gene            2686..>3576
                     /locus_tag="VE686_12795"
     CDS             2686..>3576
                     /locus_tag="VE686_12795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012383694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008658 - penicillin binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding transpeptidase
                     domain-containing protein"
                     /protein_id="HYY85363.1"
                     /translation="MSTPAAPEDPAPLPSRLGRALVSVRELFTLRVDRSMGRVGLVAV
                     AFTILFGVIAGRLVWLALHPEAAAAARRGAQAIAAARPDIIDKDEAVELLTAVLPDVN
                     ARELRERLGTRKGFIWVKREITPRQQAEVHRLGIPGVGFLPEHKRVYPNGLAAAHVLG
                     FANIDNVGIAGIEKYIDGQGLQDLAGAGMRITSEDLKPVQLSIDLRVQHAVRDELAKG
                     VAKFKAKAGAALVMDVNTSEVVALVSLPDFDPNNPVDALEKDRINRINVGVFEMGSTF
                     KALTTAMALDSGKFTINSGLD"
BASE COUNT          548 a         1302 c         1214 g          512 t
ORIGIN      
        1 gagagaacct gccttagcgg cagtagatgt tgccgtagac gtcgcgatag gtgccggacg
       61 ggcattgcgg ggccgtcgcg gcgcccacga tcgctccgcc ggtggccccg accgccgcgc
      121 ccgcaagcgc gccgccagcc cggcccgtcg ccgcgccgcc gaccgctgcc ccggcgaggc
      181 cgccgattgc cgcgccgccg agcgcccgct cgccaggcgt gttgcaggcc gccaccgaca
      241 gagcgagcgc gcccgcgagc gttgcggaaa tgatcttctt catggatgcg tttccctctt
      301 ccggcttcga gcctaaggca actacatagc ttggccttac gctctcgcca actctgcgga
      361 gccttcctgg ttccccggtg ccgccaccac ggttgccgat ctcttgctcg gaaagtgcga
      421 ggagccgcgc ggcttgacgg cgcaggggcg cttcccccac atgcggcctg tcagccggcc
      481 gggcggccgc tccgggcgaa agcccgggga ggaaagtccg ggctccatgg agacacggtg
      541 ccggataacg tccggcgggg gcgaccccag ggaaagtgcc acagagacca aaccgccccg
      601 ggcgaccggg gcaagggtga aaaggtgcgg taagagcgca ccgcggacgc ggcaacgcgg
      661 acggcagggc aaaccccacc aggagcaaga ccgaataggg gcgacgcggg tgccttcggg
      721 cactcaaggc ccgtttccag gctagtcgcc cgggttggtt gctagaggcg gtcggtaacg
      781 gccgtcacag aggaatggcc gccacgtccg gggttcgcgc cccgggccct acaaaacccg
      841 gcttacaggc cggctgacgc ttcttttcgc gccgagcggc gcaccttacc gtttcgttaa
      901 ccttgacgcg gtgtgatgtg ccccgtccgc cgagcgaccc ggcgggcgct cggttcgttt
      961 gtcggcggcc caaaccagtc acatgctctc gcaatcgctt ccatcgccgg cgcatcggcc
     1021 gcgcctgccg ggccgctgcc cggcgtgcgg cgccccaagt cgggcgcttt cgtgcgcccg
     1081 gtgtgtggac ggcgcgggag cggtcccggc tcatcggatc caaattgagc agttgcctcg
     1141 gcgcaaggtt ccgggcatcg gggcatccga tgtccaatcc gcccctctgc ctgtgtcgcg
     1201 gatcgccgac ctcgtcgcga gtgcgccggt ggtgaaccgc cgccgccagc cgaccccagt
     1261 cgcgaccggc gagcccaccg ggcacgtccc ggtgctgctg accgaggtgc tggaggcgct
     1321 cgatgccaag cgcggcggaa cgttcgtcga cggcaccttc ggtgccggcg gctacacgaa
     1381 ggcgctcctc gacgctgagc cgctcaaccg cgtcatcgcg gttgaccgcg atccagacgc
     1441 gatcgcagcc ggcgagcctc tcgtggcggc ggctcacgga cggctcgtcc ttgctccggg
     1501 acgattcggc gagctcgacg ggatcgcgca gggtctcggg attgccagcg cggacggtgt
     1561 cgtcctcgat atcggcgtct cttccatgca gctcgaccag gcggagcggg gcttctcgtt
     1621 ccggcacgac ggcccgctcg acatgcgcat ggagcgcgat gggccgagcg ccgccgatat
     1681 cgtcaacggc gcgcccgagg ccgagctcgc ggatatcttc taccactacg gagaggagcg
     1741 ccgcgcccgc gccgtcgccc gcgccatcgt cgagacccgc cgccgcgcac ccatcgccac
     1801 cacacgcgag ctcgcggacc tcgcggcggg cctgatccgg gccgagcccg gcggagcgca
     1861 cccggcgacc agagtcttcc aggctctgcg cattgcggtg aacgatgagc tcggcgagct
     1921 cgtgcgggcg ctgcatgcgg cggaacggct gttgggcgtg ggcgggcgcc tcgcggtggt
     1981 caccttccat tctctcgagg atcggatcgt caagcagttc ttcgcggccc ggaccgggcg
     2041 tacgcccggc gcgtcgcgcc acgtgccgtc cgctgggtca ggctcgaagc cgagcctcgc
     2101 agccgtcacg aggggcccga tgaccgcaag cgacgccgag gtggccgcga acccccggtc
     2161 gcgctcggcc aagctgcggg tcgcggagcg caccgacgcg ccgctcccgc cgccgctcga
     2221 atcggtgctg gccttggccg agctgccggc gacagccgag aaggggaggg gacgccgatg
     2281 atcgtccggg ttctccacat gcttgccatt ggcggcctca tcggctcggc cgcctacgcc
     2341 tactcgatta aatacgagac cctctaccac tccgagcagg tggcgaagct gaagacgaag
     2401 gtgcagcgcg agcgcgacag catcgccgtc ctgcgggcgg agtggcagca cctcaaccga
     2461 cccgaccgcc tacaagccgc ggtcgagcgc cacctcgacg tccagccgac ctcgatcaaa
     2521 cagctcgccc gtctcgccga cgtgccgaac cgtccgccgc gctccgacga gatcggccgc
     2581 aagctcgaag cgctcctgct ggctggggcc accgccacgc cgaaggacaa gcgcacgccc
     2641 gatccgcgca ccaccggcac caccacgccg aagaggtagg cccccgtgtc cacgcccgcc
     2701 gctcccgaag accccgcgcc gctcccgagc cgccttgggc gcgccctcgt cagcgtgcgt
     2761 gagctgttca cgctgcgggt cgacaggagc atgggccggg tcggcctagt ggccgtcgcc
     2821 ttcaccatcc tgttcggggt catcgctgga cggctcgtat ggctcgccct ccatcccgaa
     2881 gccgccgctg cggcgcggcg cggcgcgcag gcgatcgcgg cggcgcggcc cgacatcatc
     2941 gacaaggacg aggcggtcga gcttctcacc gccgtcctcc ccgacgtgaa cgcgcgcgag
     3001 ctgcgcgagc ggctcgggac ccgcaagggc ttcatctggg tcaagcgcga gatcacgccg
     3061 cgccagcagg cggaagtcca tcggctcggc atcccgggcg tcgggttcct gccggagcac
     3121 aagcgtgtct atccgaacgg cctcgccgcc gcgcacgtcc tcggctttgc caacatcgac
     3181 aacgtcggca tcgccggcat cgagaaatac atcgacggcc aaggcctcca ggatcttgcc
     3241 ggcgcaggca tgaggatcac ctcggaggat ctcaagccgg ttcagctctc gatcgacctg
     3301 cgcgtgcagc acgcggtcag ggacgagctc gccaagggcg tcgccaagtt caaggccaag
     3361 gccggggcgg ccctcgtcat ggacgtgaac acgagcgagg tcgtcgcgct ggtgtccctg
     3421 ccggacttcg atcccaacaa ccccgtcgac gcgctcgaga aggatcgcat caaccgcatc
     3481 aacgtcggcg tgttcgagat gggctcgacc ttcaaggcgc tgaccaccgc gatggcgctc
     3541 gactcgggca agttcaccat caactcgggc ttggat
//
LOCUS       DASQWN010000684         2129 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_174505, whole genome shotgun sequence.
ACCESSION   DASQWN010000684 DASQWN010000000
VERSION     DASQWN010000684.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2129)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2129)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2129
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_174505"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            101..847
                     /gene="aztA"
                     /locus_tag="VE686_12800"
     CDS             101..847
                     /gene="aztA"
                     /locus_tag="VE686_12800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009763346.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ABC transporter ATP-binding protein AztA"
                     /protein_id="HYY85364.1"
                     /translation="MSTTSTAIRFDEVTLGYGRRPAVHHLDGEIPAGSLIAVVGPNGA
                     GKSTLLKGIVGTLKPLEGHIRFNASPGIAYLPQAAEIDRSFPLSVYDLVAMGLWSRSG
                     LFGGISRQDRTKIEQALAAVGLTGFERRPISTLSGGQMQRALFARLLLQDAPVILLDE
                     PFTAIDAKTTADLLDLVRRWHDESRTVVAVLHDLDMVKRTFPQTLLIAREPVAWGETG
                     EVLSPENLLKARRMVEAYDPHADICHRSVA"
     gene            860..1726
                     /locus_tag="VE686_12805"
     CDS             860..1726
                     /locus_tag="VE686_12805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013167624.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0043190 - ATP-binding cassette (ABC)
                     transporter complex [Evidence IEA];
                     GO_process: GO:0030001 - metal ion transport [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metal ABC transporter permease"
                     /protein_id="HYY85365.1"
                     /translation="MLDLFYTPIAEFEFMQRALVGVIAIALGGGPVGVFLMLRRMSLT
                     GDAMAHAILPGAAVGYLVAGLSLPAMTIGGLFAGVIVAVAAGLVSRFTALKEDASLAA
                     FYLLSLALGVTIVSLRGSNVDLLHVLFGTVLALDDDTLLLLASISTITVLALAALYRP
                     LVLECVDPIFLRSVSNAGTPTHLIFLGLVVMNLVGGFHALGTLLAVGMMMLPAAASRF
                     WTSDITVMMLVSVAVGIVSGLSGLLLSFHAELPAGPAIILSAGAIYVISLVLGREGGL
                     LWLVWPGRHLEA"
     gene            1750..2129
                     /locus_tag="VE686_12810"
                     /pseudo
     CDS             1750..2129
                     /locus_tag="VE686_12810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009763344.1"
                     /note="internal stop; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ABC transporter substrate-binding protein"
BASE COUNT          300 a          757 c          666 g          406 t
ORIGIN      
        1 ttttccctcc tgcgcctgtc ggcttggaag cgggtggccg gcgccggcgt catcctgagc
       61 gtgctttggc ttttggtcct cctggttctg gcgtgaactc atgtccacga cgtcgactgc
      121 gatccgtttc gatgaagtga ccctcggcta tggccgcagg cccgccgtgc atcacctcga
      181 cggcgagatc ccggccggca gcctgatcgc cgtggtcgga cccaacgggg ccggcaagtc
      241 gaccctgctc aagggcatcg tcggcacgct caagcccctc gaaggccata tccgattcaa
      301 tgcctccccc ggcatcgcct acctgccgca ggccgccgag atcgaccggt ccttcccgct
      361 ttcggtctac gatctcgtgg ccatgggcct ctggtcccgc tccggcctct tcggcggcat
      421 ttcccggcag gaccgtacga agatcgagca ggcgctggcc gccgtgggcc tcaccggctt
      481 cgagcggcgc ccgatctcga ccctgtcggg cggccagatg cagcgggcgc tcttcgcgcg
      541 cctgctcctg caggacgctc ccgtgatcct gctcgacgag ccgtttacgg ccatcgacgc
      601 caagacgacc gccgacctgc tcgacctcgt tcgccgctgg cacgacgaat cccgcacggt
      661 ggtcgcggtc ctgcacgatc tcgacatggt caaacgcacg ttcccgcaga ccctgctgat
      721 cgcccgcgag ccggtggcct ggggcgaaac cggcgaggtg ctgagcccgg agaacctttt
      781 gaaggcccgg cgcatggtgg aggcctacga tccccatgcg gatatctgcc accgcagcgt
      841 cgcgtaagag cgcccgtcca tgctcgacct gttctatacg cccatcgccg aattcgagtt
      901 catgcagcgc gccctcgtgg gcgtgatcgc cattgctctg ggcggcggcc cggtcggcgt
      961 cttcctgatg ctgcgccgca tgagcctgac cggcgatgcc atggcgcacg cgatcctccc
     1021 gggcgcggcc gttggctatc tcgtcgccgg cctgtcgctg ccggccatga ccatcggggg
     1081 attgttcgca ggcgtgatcg tcgccgttgc ggcgggcctc gtctcccggt tcaccgcgct
     1141 gaaggaagat gcctccctgg cggccttcta cctgctgtcc ctcgcacttg gcgtcaccat
     1201 cgtgtcgctt cgcggctcga acgtggacct gctgcacgtg ctcttcggca cggtgctggc
     1261 cctcgacgac gacacgctgc tgctgctggc ctccatctcc accatcaccg ttctggcgct
     1321 cgcggcgctg taccgcccgc tcgtgctcga atgcgtggat ccgatcttcc tgcgctcggt
     1381 gagcaacgcc ggcacgccga cccatctgat cttcttaggc ttggtcgtca tgaacctcgt
     1441 cggcggcttc catgcgctcg ggaccctgct ggccgtcggc atgatgatgc tgcccgccgc
     1501 cgcctcccgg ttctggacca gcgacatcac cgtgatgatg ctggtgtccg tcgccgtcgg
     1561 catcgtctcc ggactgagcg gcctgctgct ctcgttccac gcggaattgc ccgcgggacc
     1621 ggcgatcatc ctctcggccg gcgccatcta cgtgatctcc ctcgtgctcg ggcgcgaggg
     1681 tggcctgctg tggctcgtct ggccgggcag gcacctggaa gcctgacccc tcgcaaagga
     1741 tcaagaccca tgctgacgcg aagagctgcc gtgtcccttc tggcaggatg cctcgccctc
     1801 gccgcatcgt ggctgccggc ggccgcgcag cctgccgaca agctgaaggt ggtcgcgacc
     1861 ttctcgatcc tcggcgacat ggtgcgcaac atcggtggcg agcgcgtcga ggtggcaact
     1921 ctcgttgggc cagacgggga tgcgcatgtc tattccccga cgcccgccga ctgacggcgc
     1981 ctgaccgaag cgaagatcgt gttcaccaac ggcctgaaat tcgaaggctg gatcgatcgt
     2041 ctcgtgaaat cctccggcac cagggccgaa aggatcgaag ccgccaaggg agtgaagcct
     2101 ctcaagagca acgatgaagg ccatggaca
//
LOCUS       DASQWN010000685         3614 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_571338, whole genome shotgun sequence.
ACCESSION   DASQWN010000685 DASQWN010000000
VERSION     DASQWN010000685.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 3614)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3614)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3614
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_571338"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(41..799)
                     /locus_tag="VE686_12815"
     CDS             complement(41..799)
                     /locus_tag="VE686_12815"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008965860.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HYY85366.1"
                     /translation="MAQSSKVAVVTGAGTGVGKASALALMKAGFSVALAGRRPEPLEA
                     TVKEAEAMGARALAVPTDVGDPASVRALFDRVKETFGRLDLLFNNAGTGAPAIPMEEL
                     SFEQWKKVVDANLTGSFLCAQAAIRMMKEQNPQGGRIINNGSISAHTPRPFSAPYTST
                     KHAITGLTKSISLDGRPFNIACGQIDIGNAETDMARRMKDGVPQADGSIKAEPLMDVQ
                     HVGDMIAHMASLPLDANVLFMTVMANTMPFVGRG"
     gene            1159..2334
                     /locus_tag="VE686_12820"
     CDS             1159..2334
                     /locus_tag="VE686_12820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016841344.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarylacetoacetate hydrolase family protein"
                     /protein_id="HYY85367.1"
                     /translation="MPQALDPRPVLPADAAGGAFAGRAFVPHVGGPSVIAVRGEEVVD
                     LSRAFPTMRDLCEAKDPAAALRRADGASLGRLDDIAANTPPDTRDATKPWLLAPIDLQ
                     AVKAAGVTFAVSMLERVIEERARGNPDAAAEIRREVTRLVGDDLQKLKPGSAQAMALK
                     EVLVAQGAWSQYLEVGIGPDAEIFTKTTPMASVGTGMDAGLHPKSTWNNPEPEVVIVI
                     ASDGRIVGATLGNDVNLRDFEGRSALLLSKAKDNNASCAIGPFVRFFDQSFSLDDVRR
                     TTVELTVEGPDGFRLTGSSSIAKISRDPEDLVEAMMGRVHQYPDGAVLFLGTMFAPTE
                     DRDAPGQGFTHKVGDVVTISTPNLGRLVNRMRHSNDCEPWTFGTGALMRNLAKRGLI"
     gene            2350..>3614
                     /locus_tag="VE686_12825"
     CDS             2350..>3614
                     /locus_tag="VE686_12825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015684916.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase family protein"
                     /protein_id="HYY85368.1"
                     /translation="MTFQAKNFIAGEWVAASEAAPDLNPSNTGDVVGEFPRGSAADAE
                     RAIAAAKDAFPAWSRSNPQDRHDILKRVGDTLMARKDEIGRLLSREEGKTLPEGIGET
                     VRAAQVFLFFSGECLRLAGEKVGSVRPGVDIEVTREPVGVVGLITPWNFPIAIPAWKI
                     APALAYGNTVVLKPADLVPATAHALSEIIIEAGVPRGVFNLVMGRGSVVGETLLKHRD
                     VSAISFTGSVPTGRRVAAACIESSPMKKVQLEMGGKNPMVILDDADLKVAVECAANGA
                     FFSTGQRCTASSRLIVTDGIHDKFVQALSERMKGLVVDDALKQGTHIGPVVDQAQLDQ
                     DLSYIKLGKDEGANLVAGGELLKRETPGFYLEPALFTGVDNRMRIAREEIFGPVATVI
                     RAKDYDEALEIANDTEFGLSAGICTSSLK"
BASE COUNT          550 a         1282 c         1218 g          564 t
ORIGIN      
        1 gcgcggcggg acgaagatca gcgtcagcga gctcggctga tcagccgcgg ccgacgaacg
       61 gcatcgtatt ggccatcacc gtcatgaaca gcacgttggc gtcgagcggc aggctcgcca
      121 tgtgggcgat catgtcgccg acgtgctgca cgtccatgag cggctccgcc ttgatcgacc
      181 cgtcggcctg cggcacgccg tccttcatgc gccgcgccat gtcggtctcg gcattgccga
      241 tgtcgatctg accgcaggcg atgttgaagg gacggccgtc gagcgagatc gatttcgtca
      301 gccccgtgat ggcgtgcttc gtcgaggtgt agggcgccga gaaggggcgc ggcgtgtggg
      361 ccgagatcga gccgttgttg atgatgcgcc cgccttgcgg gttctgctcc ttcatcatcc
      421 ggatcgccgc ttgagcgcac aggaacgagc ccgtgaggtt cgcgtcgacg accttcttcc
      481 actgctcgaa ggacagctcc tccatgggga ttgcgggagc gcccgtgccg gcgttgttga
      541 acaggaggtc gagccggccg aaggtctcct tgacccggtc gaacagggcc cggacggagg
      601 ccggatcgcc gacgtccgtc ggcaccgcga gcgcccgcgc acccatggcc tcggcctcct
      661 tgacggtggc ctcgagcggc tccggccgcc gcccggcgag cgcgaccgaa aagccggcct
      721 tcatgagcgc cagcgcgctc gccttgccga cgcccgttcc tgcgccggtg acgacggcga
      781 ctttgctcga ctgggccatg ctcgaatgct cctttgtgcc tgcccgggga agcgggccgc
      841 caagctctcc aacgaagcgc ctccgggcgc aagggattca tgcactgggg cgccgtcctc
      901 ccacagggag ggggagggca gcgtcggatc gcagccgccg ccttgcgcgg ttcccgccac
      961 tgccggtcct cgtcgtcatc ttccggtttc atcgtcatct tcccggattt gtcggaacgg
     1021 cctctcgcgc gttcctgtca ttgtcgcgga ttcttccggg cagccggtgc gccggagatc
     1081 agtcgggtgc tccgttcctg tcggtttctg cgttaaggtg ccgggcgacg agcacccgtc
     1141 cacacgcccg agagaccaat gccgcaagcc ctcgaccccc gtcccgtcct gcccgccgat
     1201 gccgccggag gcgctttcgc cgggcgcgcc ttcgtccccc acgtgggcgg cccgtcggtg
     1261 atcgcggtgc ggggcgagga ggtcgtcgac ctctcgcgcg cgttcccgac catgcgtgat
     1321 ctgtgcgagg ccaaggaccc cgccgcggcc ctccgcaggg ccgacggcgc gtccctcggc
     1381 cgtctcgacg acatcgccgc caacacgccg cccgatacgc gcgacgcgac gaagccttgg
     1441 ctgctggcgc ccatcgacct gcaggccgtc aaggccgcgg gcgtcacgtt cgcggtgtcg
     1501 atgctcgagc gcgtcatcga ggagcgcgcg cggggcaatc cggacgccgc cgccgagatc
     1561 cgccgcgaag tcacgcgcct cgtcggtgac gacctccaga agctcaagcc cggctcggcc
     1621 caggccatgg cgctgaagga ggtgctcgtg gcgcagggcg cctggagcca gtacctcgag
     1681 gtcggcatcg gccccgacgc cgagatcttc accaagacga cgccgatggc ctcggtcggg
     1741 accggcatgg acgccgggct gcatccgaag tcgacctgga acaaccccga gccggaggtc
     1801 gtgatcgtca tcgcctcgga cggccgcatc gtcggcgcga cgctcggcaa cgacgtcaac
     1861 ctgcgcgact tcgagggtcg ctcggccctg cttctctcga aggcgaagga caacaatgcg
     1921 tcctgcgcca tcggcccctt cgtgcgcttc ttcgatcaga gcttctcgct cgacgacgtg
     1981 cgccggacga cggtcgagct caccgtcgag gggccggacg gcttccgcct gacggggtcg
     2041 tcgtcgatcg ccaagatcag ccgcgacccg gaggacctcg tcgaggccat gatgggccgc
     2101 gtgcaccagt atcccgacgg cgcggtcctt ttcctcggca ccatgttcgc cccgaccgag
     2161 gaccgcgacg cgcctggcca gggcttcacc cacaaagtgg gcgacgtcgt caccatctcg
     2221 acgccgaacc tcgggcgcct cgtcaaccgc atgcgccact caaacgactg cgagccctgg
     2281 accttcggga cgggggcgct catgcgcaac ctcgccaaac gcggcctgat ctagagagaa
     2341 ggaaacgcca tgacgttcca agccaagaac ttcatcgccg gcgagtgggt cgcggcgtcc
     2401 gaggccgcgc cggacctcaa tccctccaac acgggcgacg tcgtcggcga attcccgcgc
     2461 ggctcggcgg ccgacgcgga gcgggcgatc gcggccgcca aggatgcctt cccggcctgg
     2521 tcgcgctcga acccgcagga ccgccacgac atcctcaagc gcgtcggcga cacgctgatg
     2581 gcgcgcaagg acgagatcgg ccgcctgctc tcgcgcgagg agggcaagac cctgccggag
     2641 ggcatcggcg agaccgtgcg ggcggcgcag gtcttcctgt tcttctcggg cgagtgcctg
     2701 cgcctcgccg gcgagaaggt cggctcggtc cggccgggcg tcgacatcga ggtcacgcgc
     2761 gaacccgtcg gcgtcgtcgg cctgatcacg ccgtggaact tcccgatcgc cattccggcg
     2821 tggaagatcg cgccggcgct cgcctacggc aacaccgtgg tgctcaagcc cgccgacctc
     2881 gtgccggcga cggcgcacgc cctgtcggag atcatcatcg aggcgggcgt gccgcggggc
     2941 gtgttcaacc tcgtcatggg ccgcggctcg gtggtcggcg agacgctcct gaagcaccgc
     3001 gacgtgtcgg cgatctcgtt cacggggtcg gtgccgaccg gccggcgcgt cgccgcggcc
     3061 tgcatcgagt cgtcacctat gaagaaggtg cagctcgaga tgggcggcaa gaatcccatg
     3121 gtgatcctcg acgacgcgga cctcaaggtc gcggtcgagt gcgccgcgaa cggggccttc
     3181 ttctcgaccg gccagcgctg cacggcgtcc tcgcgcctca tcgtgacgga cggcatccac
     3241 gacaaattcg tgcaggccct gtccgagcgc atgaagggcc tcgtggtcga tgacgccctg
     3301 aagcagggca cccacatcgg cccggtggtc gaccaggccc agctcgacca ggacctctcc
     3361 tacatcaagc tcggcaagga cgagggcgcc aatctcgtcg ctggcggcga gctcctcaag
     3421 cgcgagaccc cgggcttcta tctcgaaccg gccctgttca ccggtgtgga caaccgcatg
     3481 cgcatcgcgc gcgaggaaat cttcgggccg gtcgcaaccg tgatccgcgc caaggactac
     3541 gacgaggcgc tcgagatcgc caacgatacg gagttcggcc tgtcggcggg catctgcacc
     3601 tcgagcctca agca
//
LOCUS       DASQWN010000686         2128 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_573187, whole genome shotgun sequence.
ACCESSION   DASQWN010000686 DASQWN010000000
VERSION     DASQWN010000686.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2128)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2128)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2128
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_573187"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..770
                     /locus_tag="VE686_12830"
     CDS             <1..770
                     /locus_tag="VE686_12830"
                     /inference="COORDINATES: protein motif:HMM:NF013696.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="M20/M25/M40 family metallo-hydrolase"
                     /protein_id="HYY85369.1"
                     /translation="YGAITFVVVSDEEIEERHSVELLMAEGPRHHAVITLEAARENGD
                     IVSARKATRWYAVEATGKAAHAGVEPEKGRSATLALAHVIVETFKLNGMKDGMTVNPG
                     RIEGGSNPNVVADRARGMFDLRAWSAADLAELSAEFERIVATPWVPGVELRAEPLGGG
                     TPAMERTPGTVRLEEHAIRIAATLGFPLRGARTGGGSDVSYACHARTPGLDGLGPIGG
                     LDHGPDEYILRSSIVLRTALLAKLMQAIAADGELTNG"
     gene            763..2118
                     /locus_tag="VE686_12835"
     CDS             763..2118
                     /locus_tag="VE686_12835"
                     /EC_number="6.3.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF012348.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004356 - glutamine synthetase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006542 - glutamine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine synthetase family protein"
                     /protein_id="HYY85370.1"
                     /translation="MANRPVDSASLLACLEADAIEHFWIAYHDYGGRAQAKTLPPESF
                     RSAVNDGVVFALANLDMRADDLQAAGATMLGDSGDFLAVPDPRSYAVLPRYPGTAVCN
                     AWMRATDGSVWDGCPRTRLEAAIDELGDLGYSAQVALEPEFYLLRPQDGGDYEPVNAT
                     RMFTQAGLAAERVFIERVVDELRSMGVTVAQLGKEYGPGQYEMSVHHADPIRAVDDYF
                     SLKDAVRDLGRDQGYVATFMPKPYAHWAGSSLHVHLSIWDADSQQDLTASAHDEVSLS
                     DVGSWFLGGILEHLDALTGLGSPTVNSYKRLQPGSWAPANTSWGYGNRSGVVRIPGVG
                     KRRHVEFRSPDNSAQPYLLLAGLLGAGTDGIRRQITPPPPFQGDIAHLTEEEVERYGI
                     GYLPRTLSEALTALEQDEVMAAVVGETALEHFLIVKRDELAVYETLVHPWERETYLEM
                     I"
BASE COUNT          376 a          686 c          688 g          378 t
ORIGIN      
        1 actacggggc gatcacgttc gtcgtcgtct ctgatgagga gatcgaggag cgccattcgg
       61 tcgagttgct gatggcagag gggcctcgcc atcacgccgt gatcaccctc gaggcggcgc
      121 gggaaaacgg cgatatcgtc tcggcgcgca aggcaacgcg ctggtacgcc gtcgaagcca
      181 ccggcaaggc agcccacgcg ggtgtcgagc cagagaaggg acgcagcgcg accctcgcgc
      241 tggcgcatgt aatcgtcgag accttcaagc tcaacgggat gaaagatggg atgaccgtca
      301 accccggtcg catcgagggc ggatccaacc cgaacgtcgt cgccgatcgc gcgcgaggca
      361 tgttcgatct tcgcgcctgg tccgccgccg accttgccga gctgtcggcg gagttcgagc
      421 ggatcgtcgc gacgccctgg gtgccgggcg tcgaactccg cgccgaaccg ctgggcggcg
      481 gcacaccggc gatggagcgc acgccgggaa ctgtccggtt ggaagagcac gccattcgca
      541 tcgccgcgac cctcggcttt cctttgcgcg gcgcccgcac cggtggcggc tcggacgtga
      601 gctacgcctg tcatgcccgg acgcccggct tggatggact cggcccgatt ggcgggctcg
      661 atcatggacc tgatgagtac attctgcgca gcagcatcgt gcttcgcacg gcactgcttg
      721 ccaagctcat gcaagccatt gccgccgatg gggaactgac caatggctaa ccggccggtc
      781 gacagcgcat cgctgctggc gtgcctcgag gccgacgcga tcgagcactt ctggatcgca
      841 taccacgact acggagggcg agcgcaggcc aagacgctac cgccggagag cttccgtagt
      901 gctgtcaacg acggcgttgt cttcgcgctg gcaaatttgg acatgcgagc cgacgacctt
      961 caggcggccg gagcgacgat gctgggtgat tccggtgact tcctcgccgt tcccgaccct
     1021 cgctcctacg ccgttctgcc acgttaccca gggaccgctg tttgcaatgc ctggatgcgg
     1081 gccaccgatg ggtcggtctg ggatggatgc ccccggaccc ggttagaagc ggcaattgac
     1141 gagctgggcg acctcggcta ctcggcgcag gtggcgctcg aacccgagtt ctacctcctc
     1201 cgtcctcaag acggcggcga ctatgagcct gtgaacgcga cgcggatgtt tacgcaggca
     1261 ggactcgccg ctgagagggt cttcatcgaa cgcgttgtcg acgagttgcg gtcaatgggg
     1321 gtgacagtcg cgcagctcgg gaaagagtac gggcctggac aatatgagat gtcggtccat
     1381 catgcggacc caatccgtgc cgtcgacgac tatttctctc tcaaggacgc cgtccgtgat
     1441 ctaggccgcg atcaagggta tgtcgcgact ttcatgccga agccgtacgc ccactgggcc
     1501 gggagcagcc tccatgtcca tctcagcatc tgggacgctg atagccagca ggatctcact
     1561 gcttctgccc acgacgaggt gtcgctttcc gatgttggaa gctggttcct tggcggcatc
     1621 ctcgagcacc tcgatgcgtt gactggactt ggttcgccga cggtcaactc ctacaagcgc
     1681 ttacaacctg gctcctgggc gccggccaac acgtcttggg ggtacggcaa ccgctccggc
     1741 gtggtccgca tcccgggcgt cggcaagcgg cgtcacgtgg agttccgctc gccggacaac
     1801 agcgcccagc cctacctcct gctggccggg ctcctcggcg ctggtaccga cggcatccgc
     1861 cggcagatca cgcccccgcc cccattccag ggcgatatcg cccacctgac cgaggaggaa
     1921 gtcgagcgat acggcattgg ctacctaccc cgaacactat ccgaggcgct gaccgctctg
     1981 gagcaggacg aggtcatggc cgcggtcgtt ggcgagaccg cgctcgagca ttttctaatc
     2041 gtcaagcgag acgaattggc cgtgtacgag acgctcgttc acccgtggga acgggaaacc
     2101 tacctggaga tgatctagat catgatcg
//
LOCUS       DASQWN010000687         3937 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_178331, whole genome shotgun sequence.
ACCESSION   DASQWN010000687 DASQWN010000000
VERSION     DASQWN010000687.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 3937)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3937)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3937
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_178331"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            391..1443
                     /locus_tag="VE686_12840"
     CDS             391..1443
                     /locus_tag="VE686_12840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008837334.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TRAP transporter substrate-binding protein"
                     /protein_id="HYY85371.1"
                     /translation="MNTTRRRFLTLAGGAVAAPALLREGYAQAPQVTLKMHHFLPPVS
                     NGHAKFLAPWARKVEADSQGRIKIDIFPSMQLGGTPPQLYDQARDGVADLVWTLPGST
                     PGRFPGIEVVELPFVAARRGVVNAKATQELYETSLKEEFREVHPICVWSHDHGLVHSN
                     KQVKTLDDMKGLKLRSPTRQTAEALKALGASPIAMPVPQVPESLSQRVIDGAVIPWEV
                     IPALKVQELVKFHTEIPGSPTLYTASFVLAMNKPKYDGLPADLKAVIDKNSGQVAAEA
                     AGRMWDEQAVVVSEMVRKRGNTITTLAEDEARRWQQTTQPVIDAWVASVKDKNLDGTK
                     LLESFRGLVAKYDKTV"
     gene            1481..1984
                     /locus_tag="VE686_12845"
     CDS             1481..1984
                     /locus_tag="VE686_12845"
                     /inference="COORDINATES: protein motif:HMM:NF016200.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0031317 - tripartite ATP-independent
                     periplasmic transporter complex [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0015740 - C4-dicarboxylate transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TRAP transporter small permease"
                     /protein_id="HYY85372.1"
                     /translation="MTPDAPPPPPPDPAIGRATRVVAIFGGCLSIATATLVTLSVLGR
                     WLGFGSINGDFELVQMGVALSVFCFLPLSQARRGNIMVDTFTTWLPARVQRAIDAFWD
                     FVYAGFMALIAWCLMNGARDAVASGLNSTMLGVPLWPVFAGTVVLVLLLVATAIDTGI
                     KLLRTRP"
     gene            2020..3300
                     /locus_tag="VE686_12850"
     CDS             2020..3300
                     /locus_tag="VE686_12850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009451633.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0031317 - tripartite ATP-independent
                     periplasmic transporter complex [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0008643 - carbohydrate transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TRAP transporter large permease"
                     /protein_id="HYY85373.1"
                     /translation="MLLLIAVRMPVGLSMLVTGAAGYAYLSGWGPLLAYMKTNPYYQF
                     ANYTLSVIPLFILMGAFAERAGLSTALFRAGSAFIGHLRGGLAMAVIAACTGFGAICG
                     SSVATTATFARAALPELKTYRYEPSLATGTIAVGGTLGILIPPSVILVVYAITTEQNI
                     AKLFMAAFVPGMLAAIFYCIVIGLVVRRNPALAPPHARATGAEKIAAMRAVWPVLLVA
                     LVVVGGIYGGVFTPTEGAAVGAIAMFVVGVAHGRLGLAEVKESLIQTAETSGMIFIII
                     LGSEIFDAFLALSQLPTNAAEWVTSLGLAPYAVIAVLLVFYILLGAVMDELAMILLTL
                     PVFFPIVSALDFGMPSDEVAIWFGILVLIVVGIGLTAPPIGLNVFVVSAIAREVPIAQ
                     IYRGVLPFIAADIVRLAICVAFPGLSLVLVRWLT"
     gene            complement(3297..>3937)
                     /locus_tag="VE686_12855"
     CDS             complement(3297..>3937)
                     /locus_tag="VE686_12855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015928755.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051920 - peroxiredoxin activity [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="carboxymuconolactone decarboxylase family
                     protein"
                     /protein_id="HYY85374.1"
                     /translation="GYAACCAAIRDMDLREAITTITAPTLIVAGADDPSTPPPLMEDI
                     RARIPDAELVVIPRAAHLLAVERADVVNAHLSAFVDRQEGGEGRRGASFEAGYANRKA
                     VLGAEHVERSFAKAGPFATPWHEFITRVAWGDIWGDPTLPWKTRSMLTLTMMIALHRE
                     EEFKLHLRPALKNGVTLEELRAMLLQSSIYAGVPAANAAFRWVREVLGDELP"
BASE COUNT          572 a         1409 c         1320 g          636 t
ORIGIN      
        1 gcacgagccc gcgctcgaag gcgagcacgc agacgccgat cgcaagcccg tagacgccgc
       61 cgccgagcgg tgggccggca ccgaacaggt gcgcgtacgc gacccccgcg gcaccgctca
      121 cgaggaggat cagcaaccag aaccagaggc gctcgaagcc catcgcagcc atgcccacgc
      181 agcgccttcg agaacctccg tgcgcggcag caacgccgta ccatgcgggt cagccggcga
      241 aaagcgctcg aaaagcgggc caaagagcgc ccgcgccggg aatttacctc cgaggccttc
      301 cgtcccgggc ggcaatcggg atagcgttgc ggcaaggtcg ctttcacgca gccataacca
      361 aggggctacc ttggaccgga gggatcgccc atgaacacca cccgccgccg tttcctgacg
      421 cttgcgggcg gcgccgtcgc cgcgcccgcg ctcctgcgcg agggctacgc ccaggcgccg
      481 caggtcaccc tgaagatgca ccacttcctg cccccggtct cgaacgggca cgcgaagttc
      541 ctggccccgt gggcccgcaa ggtcgaggcg gattcgcagg gccgcatcaa gatcgacatc
      601 ttcccctcga tgcagctcgg cggcacgccg ccccagctct acgaccaggc ccgcgacggc
      661 gtcgccgacc tcgtctggac cctcccgggg tccacgcctg gccgctttcc cggcatcgag
      721 gtggtcgagc tgccattcgt cgcggcgcgc cggggcgtgg tcaacgcgaa ggcgacgcag
      781 gagctctacg agacgagcct caaagaggag ttccgcgaag tccatccgat ctgcgtctgg
      841 tcgcacgacc acgggctcgt gcattcgaac aagcaggtga agaccctcga cgacatgaag
      901 ggcctcaagc tgcgctcgcc gacgcggcag acggcggagg cgctgaaagc gctgggcgcg
      961 agcccgatcg ccatgccggt gccgcaggtg ccggaatccc tgtcgcagcg cgtcatcgac
     1021 ggcgccgtga tcccgtggga ggtcatcccc gcgctgaagg tgcaggagct ggtgaagttc
     1081 cacaccgaga tccctgggtc gccgacgctc tacaccgcga gcttcgtcct cgcgatgaac
     1141 aagccgaagt acgacggcct gcctgccgat ctgaaggccg tcatcgacaa gaactcgggc
     1201 caggtcgcgg cggaagctgc gggccgcatg tgggacgagc aggcggtggt ggtctccgag
     1261 atggtccgca agcgcggcaa caccatcacg acgctcgccg aggacgaggc ccggcgctgg
     1321 cagcagacga cgcagccggt gatcgacgcc tgggtcgcgt ccgtgaagga caagaacctc
     1381 gacgggacca agctcctcga gagcttccgc ggcctcgtcg ccaagtacga caagaccgtc
     1441 tgacggcgtt gcgcgccccg caccgttgcc ccggcgcgcc atgacgcccg acgcgcctcc
     1501 cccgccgccg cccgatcccg cgatcgggcg cgcgacgcgc gtcgtcgcca tcttcggggg
     1561 gtgcctgtcg atcgccaccg cgaccctcgt caccttgagc gtgctcgggc gctggctcgg
     1621 gttcggctcg atcaacgggg atttcgagct cgtccagatg ggggtggcgc tctcggtgtt
     1681 ctgcttcctg cccctgtcgc aggcgcggcg gggcaacatc atggtcgaca ccttcacgac
     1741 ctggctgccg gcccgcgtcc agcgggcgat cgacgcgttc tgggacttcg tctacgccgg
     1801 cttcatggcg ctcatcgcgt ggtgcctgat gaacggggcg cgcgacgcgg tggcgagcgg
     1861 cctcaactcg acgatgctcg gcgtgcccct gtggccggtc ttcgctggca cggtggtgct
     1921 cgtcctgctg ctcgtcgcca ctgcgatcga caccggcatc aagctcctgc ggacgcgccc
     1981 gtgagcggca ccgctgccgc cgtcctcggc ttcgcggtga tgcttctgct catcgccgtg
     2041 cgcatgccgg tcggcctgtc gatgctggtc acgggggcgg cgggctacgc ctacctgtcg
     2101 ggctgggggc cgctcctcgc ctacatgaag acgaacccgt actaccagtt cgccaactac
     2161 acgctgtccg tcatcccgct cttcatcctc atgggcgcct tcgcggagcg cgccgggctg
     2221 tcgacggcgc tgttccgggc cggaagcgcc ttcatcggcc acctgcgcgg cgggctcgcc
     2281 atggcggtga tcgccgcctg cacggggttc ggcgccatct gcggctcctc ggtcgccacg
     2341 acggcgacct tcgcccgggc ggcgctgccg gagctcaaga cctatcgcta cgagccgagc
     2401 ctcgcgaccg ggacgatcgc cgtcggcggc acgctcggca tcctcatccc gccgtccgtc
     2461 atcctcgtcg tctacgccat cacgaccgag cagaacatcg ccaagctgtt catggccgcc
     2521 ttcgtgcccg gaatgctggc ggcgatcttc tattgcatcg tcatcgggct cgtggtgcgt
     2581 cgcaacccgg cgctcgcgcc cccgcatgcc cgggcgacgg gcgctgagaa gatcgccgcg
     2641 atgcgggccg tatggcccgt gcttctggtg gcgctcgtgg tggtcggcgg catctacggc
     2701 ggcgtgttca caccgacgga aggcgccgcc gtcggggcca tcgccatgtt cgtcgtcggc
     2761 gtcgcccacg gcaggctcgg cctcgccgaa gtcaaggaga gcctgatcca gaccgccgag
     2821 acgtcgggca tgatcttcat catcatcctc ggctcggaga tcttcgacgc cttcctggcg
     2881 ctctcgcagc tgcccaccaa cgccgccgag tgggtgacga gcctcgggct tgcgccgtac
     2941 gccgtcatcg cggtgctgct cgtcttctac atcctgctcg gcgccgtcat ggacgagctc
     3001 gccatgatcc tcctgaccct gccggtgttc ttccccatcg tatccgccct cgacttcggc
     3061 atgccgtccg acgaggtcgc gatctggttc ggcatcctcg tgctgatcgt cgtcggcatc
     3121 ggcctcacgg ccccacccat cggcctcaac gtcttcgtgg tgagcgcgat cgccagggaa
     3181 gtcccgatcg cgcagatcta tcgcggcgtg ctgcccttca tcgctgccga catcgtgcgg
     3241 ctcgccatct gcgtcgcctt cccgggcctg tcgctcgtgc tggtgcgctg gctgacttaa
     3301 ggcagctcgt ctcccagcac ctcgcggacc cagcggaagg cggcgttggc ggccggcacg
     3361 ccggcgtaga tcgaggattg gagcagcatg gcgcgcagct cctcgagggt gacgccattc
     3421 tttagcgccg ggcgcaggtg gagcttgaac tcctcctcgc ggtgcaatgc gatcatcatc
     3481 gtgagcgtca gcatcgaccg cgtcttccat ggcagtgtgg ggtcgcccca gatgtcgccc
     3541 caagcgacgc gcgtgatgaa ctcgtgccag ggcgttgcga agggaccggc cttggcgaag
     3601 gagcgctcga cgtgctcggc gccgagcacc gccttgcggt tggcgtagcc cgcctcgaag
     3661 ctcgccccgc gacgcccctc gccaccctcc tgtcggtcga cgaaggccga gagatgcgcg
     3721 ttgacgacgt cggcgcgctc gactgccagc aggtgggcag cgcgcgggat cacgacgagc
     3781 tcggcgtcgg ggatccgggc gcggatgtcc tccatcagcg gcggtggcgt cgaggggtcg
     3841 tcggcgccgg cgacgatcag cgtcggcgcc gtgatggtgg tgatggcctc gcgcaggtcc
     3901 atgtcgcgga tcgcggcgca gcaggcggca tagccgt
//
LOCUS       DASQWN010000688         2346 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_179608, whole genome shotgun sequence.
ACCESSION   DASQWN010000688 DASQWN010000000
VERSION     DASQWN010000688.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2346)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2346)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2346
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_179608"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            134..>2346
                     /locus_tag="VE686_12860"
     CDS             134..>2346
                     /locus_tag="VE686_12860"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012335036.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003918 - DNA topoisomerase type II
                     (double strand cut, ATP-hydrolyzing) activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006265 - DNA topological change [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA gyrase subunit B"
                     /protein_id="HYY85375.1"
                     /translation="MAEPAINLNVDAYGAESIKVLKGLDAVRKRPGMYIGDTDDGSGL
                     HHMVYEVVDNAIDEALGGHATEVTVTLNADGSVTVTDNGRGIPTDIHAGEGVSAAEVI
                     MTQLHAGGKFDQNSYKVSGGLHGVGVSVVNALSSWLKLRIFRGGKEHAMEFRHGDAVA
                     PLAVVGDAEGRRGTEVTFLPSTETFTMVEFDYLTLEHRLRELAFLNSGVRIVLTDNRH
                     AERKREEMMYEGGTEAFVRYLDRAKTPLVRDPVVIRSERDGIGVEVALWWNDSYHENV
                     LCFTNNIPQRDGGTHLAGFRAALTRQITGYAESTGLSKKEKVSLTGDDCREGLTAIVS
                     VKVPDPKFSSQTKDKLVSSEVRPAVENVINEALHHWLEEHPAEAKTVVGKVAMAAAAR
                     EAARKAREMTRKDALGVTSLPGKLADCQERDPSKCEILLVEGDSAGGSAKQGRDRAFQ
                     AVLPLRGKILNVERARLDKMLSSQEIGTLITALGTGIGREEFNPDKLRYHRIIIMTDA
                     DVDGSHIRTLLLTFFFRQMPELIERGHLYIAQPPLYKATRGKQAIYLKDERALEDFLI
                     DAGVEGATLRLASGLEFQGAQLKSLIDEARLVRQVLQSLHTRYDRAAVEQAAIAGALR
                     PDVVEDPERGPGAAAYIAQRLDAIAEELERGWTSEVREGGYVFSRVVRGVKQAAVLDQ
                     ALIASQEAKKLDERAASLQDVYAKPATLLRKGDEIAIDGPQALFKAIMAIGRKGL"
BASE COUNT          418 a          803 c          776 g          349 t
ORIGIN      
        1 ttttccacgc tttcccacgc gcgcgtatgc gcgcgggggt gaaatttcaa tcatccgtca
       61 ctaaataatt gatctgacga atcaaagacc cggcgcgcac ctccctttcc cggcgcgctt
      121 tgaaggatcc tacatggccg aacccgcaat caacctgaat gtcgacgcct atggggcgga
      181 atcgatcaag gtcctcaagg gcctcgatgc ggtgcgcaag cggccgggca tgtatatcgg
      241 cgacaccgac gacgggtcgg gcctccacca catggtctac gaggtcgtcg acaacgcgat
      301 cgacgaggcc ctcgggggcc acgccaccga ggtgacggtc acgctcaacg cggacggttc
      361 ggtcacggtg accgacaacg gccgcggcat tccgacggac atccatgcgg gcgaaggcgt
      421 ttcggcggcc gaagtcatca tgacccagct ccatgcgggc gggaaattcg accagaactc
      481 ctacaaggtc tccggcggcc tgcacggcgt cggcgtttcc gtggtgaacg ccctgtcgag
      541 ctggctgaag ctccgcattt tccggggcgg caaggagcac gccatggagt tccgccacgg
      601 cgacgcggtg gcgccgctcg ccgtcgtggg cgacgcggag ggtcggcgcg gcaccgaggt
      661 gaccttcctg ccgtcgaccg aaaccttcac gatggtggag ttcgattacc ttaccctcga
      721 gcaccggctg cgggagctcg ccttcctcaa ttcgggcgtg cgcatcgtcc tgaccgacaa
      781 ccggcatgcg gagcgcaagc gcgaggagat gatgtacgag ggcggcacgg aagccttcgt
      841 gcgctatctc gaccgcgcca agacgcccct cgtgcgcgac ccggtggtga tccgctccga
      901 gcgcgacggc atcggcgtcg aggtcgccct gtggtggaac gattcctacc acgagaacgt
      961 gctctgcttc accaacaaca tcccgcagcg cgacggcggc acgcatctcg cgggcttccg
     1021 ggcggcgctg acacgccaga tcaccggcta tgcggagtcc accggcctct ccaagaagga
     1081 gaaggtctcg ctcaccggcg acgattgccg cgagggcctg acggcgatcg tctccgtcaa
     1141 ggtgccggac cctaaattct cctcgcagac gaaggacaag ctcgtctcct ccgaggtgcg
     1201 gccggcggtc gagaacgtga tcaacgaagc gctccaccac tggcttgagg agcacccggc
     1261 ggaggccaaa acggtcgtcg gcaaggtcgc catggcggcg gcagcgcgcg aggccgcccg
     1321 gaaggcccgc gagatgaccc gcaaggacgc cctcggggtg acctcgcttc ccgggaagct
     1381 cgccgattgc caggagcgcg acccctcgaa atgcgagatc ctgctggtcg agggcgattc
     1441 cgccggcggt tcggccaagc agggccggga ccgggccttc caggccgtcc tgcccctgcg
     1501 cggcaagatc ctgaacgtcg agcgcgcgcg cctcgacaag atgctctcga gccaggagat
     1561 cggcacgctg atcacggcgc tcggcaccgg catcgggcgg gaggagttca accccgacaa
     1621 gctgcgctac caccgcatca tcatcatgac ggatgctgat gtcgacggct cgcacatccg
     1681 cacgctgctc ctcaccttct tcttccgcca gatgccggag ctgatcgagc gcggccacct
     1741 ctacatcgcg cagcctccgc tctacaaggc gacccgcggc aagcaggcga tctacctgaa
     1801 ggacgagcgc gcgctcgagg acttcctgat cgacgccggc gtcgagggcg cgaccttgcg
     1861 cctggcctcg ggcctcgaat tccagggcgc ccagctgaag agcttgatcg acgaggcgcg
     1921 cctcgtccgc caagtgctcc agagcctgca cacgcgctac gaccgcgccg cggtcgaaca
     1981 ggccgcgatc gccggcgcgc tgcgtccgga cgtcgtcgag gatcccgagc gcggtcccgg
     2041 ggcggcggcc tatatcgcgc agcgcctcga tgcgatcgcg gaggagctcg aacgcggctg
     2101 gaccagcgag gtccgggagg gcggctacgt gttctcgcgc gtcgtgcgcg gcgtgaagca
     2161 ggcggccgtg ctcgaccagg cgctcatcgc aagccaggag gccaagaagc tcgacgagcg
     2221 cgccgcctcg ctgcaggacg tctacgcgaa gcccgccacg ctgctgcgca agggcgacga
     2281 gatcgcgatc gacggtccgc aggccctctt caaggccatc atggcgatag gccgcaaggg
     2341 gctgca
//
LOCUS       DASQWN010000689         2410 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_574618, whole genome shotgun sequence.
ACCESSION   DASQWN010000689 DASQWN010000000
VERSION     DASQWN010000689.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2410)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2410)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2410
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_574618"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            185..>2410
                     /gene="carB"
                     /locus_tag="VE686_12865"
     CDS             185..>2410
                     /gene="carB"
                     /locus_tag="VE686_12865"
                     /EC_number="6.3.5.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012317574.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006807 - nitrogen compound metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="carbamoyl-phosphate synthase large subunit"
                     /protein_id="HYY85376.1"
                     /translation="MPKRTDISSILIIGAGPIVIGQASEFDYSGTQACKALRAEGYRI
                     VLVNSNPATIMTDPDLADATYVEPITPEIVAKIIEKERHVLPGGFALLPTMGGQTALN
                     CALSLKKMGVLEAFDVEMIGADAEAIDKAEDRKLFREAMDKIGLETPLSRLANASALK
                     KADREKYLAEIARIGALDEHPGDKKRMLGAFELRWAAGENDRRKRYQEHALGEALMAL
                     SDVGLPAIIRPSFTLGGTGGGIAYNREEFLDIVERGLDASPTNEILIEQSVLGWKEYE
                     MEVVRDTADNCIIVCSIENVDPMGVHTGDSITVAPALTLTDKEYQIMRDASIAVLREI
                     GVETGGSNVQFAVSPEDGRMVVIEMNPRVSRSSALASKATGFPIAKVAARLAVGYTLD
                     EIENDITGGATPASFEPTIDYIVTKIPRFAFEKFPGAEHTLTTSMKSVGECMAIGRTF
                     AESLQKALRSLETGLTGLDEIEIEGLGRGDDKNAIKAALGTPTPDRLLKVAHALRLGF
                     DLEEVYDSCKIDRWFLEQLRDIVTMEAKVQAHGLPRTPGALRQLKSMGFSDARLAVLS
                     GASEAEVTALRRGLDVRPVFKRIDTCAAEFASPTPYMYSTYAAPFAGTPADEAAPSDA
                     RKVMILGGGPNRIGQGIEFDYCCCHACFALRDAGFETIMVNCNPETVSTDYDTSDRLY
                     FEPLTSEDVLEIIDVDLHGVVEESIDQHRPLGRQPALPAEAAEAGQLLHRRCQLVDVV
                     DD"
BASE COUNT          426 a          867 c          774 g          343 t
ORIGIN      
        1 ctgaaaagcc tccagttcac agctcaggct tgcacgacca gcttaagatc tccgaaaacg
       61 gacccttcaa atcgacggcc ctagcgtata tgacgcccta gagcacccag ccccgacagc
      121 ctcgtctccc aggagccagc catgcgcctg ggcgggcgga cgcggccgag cgagacctcg
      181 acccatgccg aaacggaccg acatctcctc catcctgatc atcggggccg ggccgatcgt
      241 catcggccag gcctccgagt tcgactactc cgggacgcag gcctgcaagg cgcttcgcgc
      301 cgagggctac cgcatcgtcc tcgtgaattc gaatccggcc accatcatga cggatccgga
      361 cctcgccgac gcaacctacg tcgagccgat cacgcccgag atcgtcgcca agatcatcga
      421 gaaggagcgc cacgtcctgc cggggggctt cgcgctgctt ccgaccatgg gcggccagac
      481 ggcgctgaac tgtgccttgt cgttgaagaa gatgggcgtc ctcgaggcct tcgacgtcga
      541 gatgatcggc gccgacgccg aggccatcga caaggccgag gaccgcaagc tgttccgcga
      601 ggccatggac aagatcggcc tcgagacgcc gctgtcgcgc ctcgccaacg cctcggcgct
      661 caagaaggcc gaccgcgaga aatacctggc cgagatcgcc cgcatcggcg ccctcgacga
      721 gcatcccggc gacaagaagc gcatgctcgg cgccttcgag ctgcgctggg ctgcgggcga
      781 gaacgaccgc cgcaagcgct accaggagca cgccctcggc gaggcgctga tggcgctctc
      841 ggacgtcggc ctgccggcga tcatccggcc ctcgttcacg ctcggcggca ccggcggcgg
      901 catcgcctac aaccgcgagg agttcctcga catcgtcgag cgcgggctcg acgcctcgcc
      961 gaccaacgag atcctgatcg agcagagcgt gctcggctgg aaggagtacg agatggaggt
     1021 cgtccgcgac acggcggaca actgcatcat cgtgtgctcg atcgagaacg tcgaccccat
     1081 gggggtccac acgggcgact cgatcaccgt cgcgccggcg ctgacgctga ccgacaagga
     1141 ataccagatc atgcgcgacg cctcgatcgc ggtgttgcgc gagatcgggg tcgagaccgg
     1201 cggctcgaac gtgcagttcg ccgtcagccc cgaggacggc cgcatggtcg tcatcgagat
     1261 gaacccgcgc gtgtcgcgct cctcggcgct tgcctccaag gcgacggggt tcccgatcgc
     1321 caaggtcgcg gcgcggctcg ccgtcggcta caccctcgac gagatcgaga acgacatcac
     1381 ggggggcgcg acgccggcct ccttcgagcc gacgatcgac tacatcgtca ccaagatccc
     1441 gcgcttcgcc ttcgagaagt tccccggcgc cgagcatacg ctcaccacct cgatgaagtc
     1501 ggtcggcgaa tgcatggcca tcggccgcac cttcgcggag agcctgcaga aggccctgcg
     1561 ctccctggag accggcctca ccggcctcga cgagatcgag atcgagggcc tcggccgcgg
     1621 cgacgacaag aacgccatca aggcggcgct gggcacgccg acgccggacc gcctgctcaa
     1681 ggtcgcgcat gccctgcgcc tcgggttcga cctcgaggag gtctacgaca gctgcaagat
     1741 cgaccgctgg ttcctcgagc agctgcgcga catcgtcacc atggaggcga aggtgcaggc
     1801 gcacggcctg ccgcgcacgc ccggcgccct gcgccagctg aagagcatgg ggttctcgga
     1861 cgcgcggctc gcggtgctga gcggcgcgag cgaggccgag gtcacggccc tgcggcgcgg
     1921 gctcgacgtc cgcccggtgt tcaagcgcat cgacacctgc gcggccgagt tcgcctcgcc
     1981 gacgccgtac atgtactcga cctacgcggc gcccttcgca gggacgccgg ccgacgaggc
     2041 cgccccgtcg gacgcccgca aggtgatgat cctcggcggc ggtccgaacc gcatcgggca
     2101 gggcatcgag ttcgactact gctgctgcca tgcctgcttc gccctgcgcg acgccggctt
     2161 cgagaccatc atggtcaact gcaacccgga gacggtctcg accgactacg acacctcgga
     2221 ccggctctac ttcgagcccc tgacgtccga ggacgtcctc gagatcatcg acgtcgacct
     2281 ccacggcgtc gtcgaggaat cgatcgatca gcaccggccg ctcggccgac agcccgccct
     2341 cccggccgag gctgccgaag ccggccagct cctgcatcgc cgatgccagc tggttgacgt
     2401 cgtggacgat
//
LOCUS       DASQWN010000690         2896 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_375880, whole genome shotgun sequence.
ACCESSION   DASQWN010000690 DASQWN010000000
VERSION     DASQWN010000690.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2896)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2896)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2896
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_375880"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..532)
                     /locus_tag="VE686_12870"
     CDS             complement(<1..532)
                     /locus_tag="VE686_12870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018321026.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY85377.1"
                     /translation="MTARWTTLAVTAAASVFLGHPALSQEETDQRFGTVHFDTSCNEV
                     AQRRFDRGMRYQHSFWYSSSREIFQEALKADPACAIAYWGIALSFLHNPHSPPPAPNL
                     PLGLAALQNAKAVAAKTERERDYIDALTVFYTDYDKVPHGARVQAYLKAMEALAQKYP
                     NDDEAQIFYAITLNVAA"
     gene            complement(703..1935)
                     /locus_tag="VE686_12875"
     CDS             complement(703..1935)
                     /locus_tag="VE686_12875"
                     /inference="COORDINATES: protein motif:HMM:NF012730.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0005216 - monoatomic ion channel activity
                     [Evidence IEA];
                     GO_function: GO:0030551 - cyclic nucleotide binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cyclic nucleotide-gated ion channel"
                     /protein_id="HYY85378.1"
                     /translation="MSPAAALQHDRWRALRRRVYDLLDPDIQTFWDRVVHRSLIALIL
                     VNVVAVVLESVPSIDARFAGIFLVLEVASVLVFTVEYALRLWTAVEHMPVAGRSGAAA
                     RLAWARTPSAIVDLLAILPFYLALFGLTDLRVFALFRLVRFFKLVRYSSGLASLFEAI
                     YAERHALLATLLILAGVMLSMATLMHLVEGAAQPDRFGTIPDAMWWAIITLTTVGYGD
                     VVPITPLGKVVAGVTAVMGIAMLALPVGIIATSFSEVIHRREFVVTWSMVARVPIFGS
                     LGAGALAEIMQLLYSRTARKGEVIAGRGEKADAMYFIVSGKVDVELQDADDVALGPGE
                     FFGEIALLTGEERTATVRACDDTQLLVLRAHDLDRLMSRVPEIGERIREVGHTRAPDR
                     VDGDRPRTDGTRSRGGKR"
     gene            complement(1932..>2896)
                     /locus_tag="VE686_12880"
     CDS             complement(1932..>2896)
                     /locus_tag="VE686_12880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012753019.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="DHHA1 domain-containing protein"
                     /protein_id="HYY85379.1"
                     /translation="HLLHEALRQILGDHVAQKGSLVAPERLRFDFSHPKPVGDDDVEK
                     VEDIANRVLLQNEPVVTKLMAVDEAIESGARALFGEKYGDEVRVVSMGRAATGEGRNK
                     AFSVELCGGTHVTRTGDIGVIAVVSEAAVGAGVRRLEAMTGDAARRHLAQESRRLREV
                     AGLLKAPIQEAPERVAALVEDRRRLERELAEARRKLAMGGGAAADGAEVRDVAGVKLM
                     ARAVSGIEMRDLKSLADEGKKRIGSGVVAIVGVAGDGKAGIVVGVTEDLTARIDAVSL
                     VRAGAEQLGGKGGGGRRDMAQAGGPDGANADAALKAVEAALTAG"
BASE COUNT          465 a          975 c         1017 g          439 t
ORIGIN      
        1 aggcggcgac gttgagcgtg atggcgtaga agatctgcgc ctcgtcgtcg ttcgggtact
       61 tctgcgccag ggcctccatg gccttgaggt aggcctggac tcgggcgcca tgcgggacct
      121 tgtcgtagtc agtgtagaac accgttaggg cgtcgatgta gtcgcgctcg cgctccgtct
      181 tggcggcgac cgccttcgcg ttctggagcg ccgcaaggcc gaggggcagg ttcggcgccg
      241 gtggcggtga atgcgggttg tggaggaagc tgagggcgat gccccagtac gcgatcgcgc
      301 aggcgggatc ggccttgagc gcctcctgga agatttcgcg cgacgagctg taccagaacg
      361 agtgctgata gcgcatgccg cgatcgaagc gtcgctgtgc gacctcgttg cacgaagtgt
      421 cgaagtgcac cgtaccgaag cgctggtccg tctcttcctg actcagcgcc ggatggccca
      481 agaaaacgga ggcggctgcc gtaacggcga gggtcgtcca gcgtgctgtc atggccattg
      541 ttacccccta agcatcaccc ggtagcagga cgaatacgca gacaagtggt gtcgagaacc
      601 agcggcatgg tcggcaggac tttcgcccgt cccgcggaag caggccgcca ttctacacca
      661 ttccgacctg tgcggccatg ggcacgtgag cgactccggg cttcaacgct tgccgccgcg
      721 gctgcgtgtg ccgtcggtgc ggggccggtc gccatcgacc cggtcggggg ctcgcgtgtg
      781 gccgacctcg cggatgcgct cgccgatctc ggggacgcgg ctcatcaggc ggtcgaggtc
      841 gtgggcgcgc aggaccagca gctgggtgtc gtcgcacgcg cgcacggtgg cagtgcgctc
      901 ctcgccggtc agcagcgcga tctcaccgaa gaactcgcct ggcccaaggg ccacgtcgtc
      961 ggcgtcctgg agttccacgt cgaccttgcc agaaacgatg aagtacatag cgtcggcctt
     1021 ctcgccccgc ccggcgatga cctcgccctt gcgggccgtg cgcgagtaca ggagctgcat
     1081 gatctccgcc agggcgcccg cgccgaggct tccgaagatc gggacccgcg cgaccatact
     1141 ccaggtcacc acgaactcgc gccggtggat cacctccgag aaagaggttg cgatgatacc
     1201 gaccgggagc gccagcatgg cgatgcccat gacggcggtc acgcccgcca ccaccttgcc
     1261 aagcggcgtg atcggcacca cgtcgccgta cccgactgtg gtcagggtga tgatcgccca
     1321 ccacatggca tccgggatgg tgccgaagcg gtcgggctgc gccgcaccct cgacgaggtg
     1381 catcagggtc gccatcgaca gcatcacgcc ggcgaggatg agcagcgtcg caagaagcgc
     1441 gtggcgctcg gcatagatag cctcgaacag cgacgcgagc cccgacgagt agcgcaccag
     1501 cttgaaaaag cgcaccaatc ggaacagcgc gaacacgcgc aggtcggtca gcccgaacag
     1561 cgcgaggtag aacgggagga tcgccaggag atcgacgatg gccgatggcg tacgcgccca
     1621 ggccaggcgc gcggcggcgc ctgagcgccc tgcaaccggc atgtgctcga ccgcggtcca
     1681 gaggcgcagc gcgtactcga ccgtgaagac gaggaccgag gccacctcga ggacgaggaa
     1741 gatgcccgcg aaacgcgcgt cgatgctcgg cacggactcg agcacgaccg cgactacgtt
     1801 gacgaggatg agggcaatca ggctgcggtg gacaacgcgg tcccagaagg tctggatgtc
     1861 ggggtcgaga agatcgtaga cccgccggcg caacgcgcgc cagcgatcgt gctggagggc
     1921 cgcggcaggg ctcacccggc cgtcagggcc gcttccacgg ccttgagcgc cgcatctgcg
     1981 ttggcgccgt cgggaccgcc ggcttgcgcc atgtcgcggc ggccgccgcc gcctttgccg
     2041 ccgagctgct ctgctccggc gcgcacgagg ctcacggcgt cgatgcgggc ggtgaggtct
     2101 tcggtgacgc cgacgacgat gccggccttg ccgtcgccag cgacgccgac gatcgccacc
     2161 actcccgagc cgatgcgctt cttgccttcg tctgcgaggc tcttgaggtc gcgcatctcg
     2221 atgccggaga cggcgcgcgc catgagcttg acgccggcga catcgcgcac ctccgcacca
     2281 tcagccgccg cgccgccgcc catggcgagc ttgcggcgcg cctcggcgag ttcccgctca
     2341 agcctgcggc ggtcctcgac gagggcggcg acgcgctcgg gcgcctcctg gatgggggcc
     2401 ttgaggaggc ctgcaacctc gcgcaggcgc cggctctcct gcgcgaggtg gcgtcgcgct
     2461 gcgtcgcccg tcatggcctc gaggcggcgc acgcccgcgc cgacggccgc ctccgagacg
     2521 acggcgataa cgccgatgtc gccggtgcgg gtgacgtggg tgccgccgca gagctcgact
     2581 gagaaggcct tgttgcgccc ctcccctgtc gctgcgcggc ccatggagac gacgcggacc
     2641 tcgtcgccgt acttctcgcc gaacaacgca cgggcccctg actcgatggc ctcgtcgacg
     2701 gccatgagct ttgtgaccac gggctcgttc tgcaacagca cgcggttggc gatatcctcg
     2761 accttctcga cgtcgtcgtc accgacgggc tttggatggc tgaagtcgaa gcggaggcgc
     2821 tcgggcgcga cgagcgaccc cttctgcgcg acgtgatcgc cgagaatctg ccgcagcgcc
     2881 tcgtgcagga ggtgcg
//
LOCUS       DASQWN010000691         3099 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_181649, whole genome shotgun sequence.
ACCESSION   DASQWN010000691 DASQWN010000000
VERSION     DASQWN010000691.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 3099)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3099)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3099
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_181649"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..688
                     /locus_tag="VE686_12885"
     CDS             <1..688
                     /locus_tag="VE686_12885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011475114.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HYY85380.1"
                     /translation="AASFGAVLCSLALLRTSELHRIERTPPTRSGFAEGFRYVWARPE
                     LKGVLLMLFLIGTFGLNFRIFIATMSVTVFEGGPEQYGFLTSMMAVGSIMGALFSASR
                     EKPRPVLLLAGVAAFGAACALAAVMPTYLWFGAALVIIGLSVHTFTTSANSFVQLSTE
                     PFMRGRVLAILLALSLGGTPLGSPMVAWVADTFGPRWSLAVGAAAGVAALLVGLVTFA
                     GRRGGTGTPS"
     gene            complement(796..2448)
                     /locus_tag="VE686_12890"
     CDS             complement(796..2448)
                     /locus_tag="VE686_12890"
                     /inference="COORDINATES: protein motif:HMM:NF012772.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EAL domain-containing protein"
                     /protein_id="HYY85381.1"
                     /translation="MRYLRQFSGWSLVAVFLAMTLPIAIAVLLAQHEGHQAEERYLYS
                     LANSALRPSEGTADQLTSGAGIVNAMSPEEACSESGLDRMRRIDLSSTLLQAVGRIEG
                     DTMVCSSFTGSQAVPLGPPTLRSQTDAVIRTDVRFVNSDESYLAIASGSFVGVVHKDV
                     PLSFVESVPGLTIGVFNWSNQRPLTMRGGALDPAWMGPRSRGHRVFRSGGRMVAVVRS
                     QRYDIGAVAALPLSHAAGFVREAAMVLVPLGAVVGTVFSAMLISVIRSRASMSGMIRQ
                     GLRANEFYLQYQPVIEVSSGLTVGAEALLRWRRANGDLIAPDIFIPAAEQSALIEQIT
                     ARVLELLAKDAGAIVRVAPDFHFAVNFSAADMHREDIVDVLGRFLDNAGLAPRNLIIE
                     ATERSLVDIERARRTMRSSRAKGIRTAIDDFGTGYSSLGYLAHIEVDFLKIDKLFVQA
                     LGTESATSHVAARIIDMAKDLNLRIIAEGVETEEQQRLLSLLEVDFVQGYLHDRPLPI
                     ERLLERLRADRNSRPQTVEGGRRAAPNATSWLPSMPGPMTST"
     gene            complement(2755..>3099)
                     /locus_tag="VE686_12895"
     CDS             complement(2755..>3099)
                     /locus_tag="VE686_12895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012255339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HYY85382.1"
                     /translation="RLGGWQVISWALVLALPVMAALALATLPATWSGIGLPAWAALAY
                     VSVFSMLVGFVFWYRGLALGGIAGVGQLQLLQPFFGLALAGLLLHEPVPWTMLAATAL
                     VVLCVAGAKRFA"
BASE COUNT          533 a         1042 c         1009 g          515 t
ORIGIN      
        1 cgccgcgtcg ttcggagccg tgctctgctc cctggctctc ctgcggacga gcgagctcca
       61 tcgcatcgag cgcaccccgc cgacccgcag cggcttcgcc gagggcttcc gctacgtctg
      121 ggcgcgcccg gagctcaagg gcgtcctcct gatgctcttc ctcatcggga cgttcggcct
      181 gaacttccgg atcttcatcg ccacgatgtc ggtcacggtg ttcgagggcg gcccggagca
      241 gtacgggttc ctcacctcca tgatggcggt cggctccatc atgggtgcgc tcttctctgc
      301 cagccgcgag aagcctcgcc ccgtgctcct ccttgccggg gttgcggcct tcggcgcggc
      361 ttgcgcgctc gcggccgtga tgcccaccta cctctggttc ggcgcggccc tcgtcatcat
      421 cggcctgtcg gttcacacct tcacgacctc cgcgaacagc ttcgtccagc tctcgaccga
      481 gccattcatg cgcgggcggg tgctggcgat cctcctcgcc ctgtcgcttg gcgggacgcc
      541 gctcggcagc ccgatggtcg cctgggtcgc cgacaccttc ggaccgcgat ggtcgctcgc
      601 cgtcggcgcg gccgcgggcg ttgccgccct cctcgtcggc ctcgtcacct tcgccggacg
      661 acgcggcggg accggcacgc cgagctagct acagcctgcc cttatggctg gccctccccg
      721 ttgcaggggc gccttgggca ggcggggctc gggcgcagct ggaggaggat acgtcgggcg
      781 cgggtctggg tcggctcagg tcgaagtcat cggacccggc atggaaggaa gccaactcgt
      841 cgcattcgga gcggctcgac gacctccctc aacggtttgt ggccgcgagt tgcggtcggc
      901 gcgcaggcgc tcaagcagcc gctcgatcgg caacggccgg tcgtgcaggt acccttgcac
      961 aaaatcgact tcgagaaggc tgagcagccg ctgctgctct tcggtttcga cgccttctgc
     1021 gatgatccgc aggtttaggt ccttcgccat atcaatgatc cgagctgcca cgtggctagt
     1081 ggccgattcc gtcccgagcg cctgcacgaa cagcttgtcg atcttgagga aatccacctc
     1141 gatatgcgcg agataaccca ggctggagta gccggtgccg aagtcgtcga tagcagtcct
     1201 gatgcccttg gcgcgggatg aacgcatcgt gcggcgggcg cgttcgatgt caacaaggct
     1261 gcgctcggtc gcttcgatga tcaagttgcg cggagctagt cctgcgttgt cgagaaagcg
     1321 gccgagcaca tccacgatat cctcgcgatg catgtcagcc gccgagaagt tcacagcgaa
     1381 gtgaaaatcc ggtgcaactc gcactatggc accggcatcc ttggcgagca gctccagaac
     1441 gcgcgccgta atctgctcga tgagcgcgct ttgctcggct gccgggatga aaatatctgg
     1501 cgcgataagg tcgccattgg cccggcgcca ccgaagcagc gcttcggctc cgaccgtcag
     1561 gccgctcgag acctcgatta ccggctggta ctggagatag aactcgtttg ccctgagccc
     1621 ctggcggatc attcccgaca tggaggcgcg ggaccggatg acggagatga gcatcgccga
     1681 gaaaacggtg cctacgaccg ccccgagcgg aaccaggacc attgccgctt cgcgaacaaa
     1741 gcctgcggca tggctcagcg gcagggccgc caccgctccg atgtcgtagc gttgcgaccg
     1801 gacgacggcg accatcctgc cgccgctccg gaacacgcgg tggcccctgc tccgtgggcc
     1861 catccaagcg ggatcgaggg cgccgccacg catcgtcagg ggacgctggt tcgaccagtt
     1921 gaacacgccg atggtcaacc cgggcacgct ctccacgaag ctcagcggca cgtctttgtg
     1981 gacgacgccg acgaacgacc cggaagcaat ggctagatac gattcatcgg aattgacaaa
     2041 ccgaacgtcg gtccggatga ccgcgtctgt ctgggagcga agggtgggcg gtccaagcgg
     2101 gacggcctgc gatccagtga aggacgagca caccattgtg tccccttcaa tgcgtcccac
     2161 ggcttgcagc aaggtcgacg acaggtcgat gcggcgcatc cggtccagac cgctctctga
     2221 acaagcctcc tctggcgaca tcgcattgac gatgcctgcg cccgaggtga gttggtcggc
     2281 agtaccttcg gacggcctca gcgcactgtt ggccaggctg tagagatagc gttcctcggc
     2341 ctggtgcccc tcatgctgag cgagcaggac cgcgatggcg atcggcagcg tcatggccag
     2401 gaaaaccgcg acgaggctcc agccactgaa ctgtcgaagg tatctcatgc gcacccgccg
     2461 ccgaacaggg cctaacatgc ctaagccaac cgcaggttaa tggttcggcc ctgcgacaaa
     2521 cggaacgctc tgttactgta accttccacc cttgagatgc agacaggaga aaagctaccc
     2581 ttgcttcgtc ttgagcatgc cctcgagccc gcttgcgtgg tcccccacgc tttcaaggga
     2641 gccaccaccg gagccctgga tcgctgccgg cgcgaacagg ggcgccttgt cgcgagcggc
     2701 gtagccttgt cgcgcgcagt cgccgggtgc tggagcagag gcgcaaacgc gcactcaggc
     2761 gaagcgcttg gcgcctgcca cgcagaggac gacgagggcc gtcgccgcga gcatggtcca
     2821 ggggacgggc tcgtgcagca gcagtccggc aagggcgagg ccgaagaagg gctggagcag
     2881 ctgcagctgc ccgacgccgg cgatgccgcc cagcgcaagt ccgcggtacc agaacacgaa
     2941 gccgacgagc atgctgaaaa ccgagacgta ggcgagcgcg gcccaggccg gcaggccgat
     3001 gccgctccac gtcgccggca aggtcgcgag cgccagggcg gccatgacgg ggagcgccag
     3061 caccagcgcc cacgagatca cctgccagcc gccgagccg
//
LOCUS       DASQWN010000692         4461 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_183222, whole genome shotgun sequence.
ACCESSION   DASQWN010000692 DASQWN010000000
VERSION     DASQWN010000692.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 4461)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4461)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4461
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_183222"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..370)
                     /locus_tag="VE686_12900"
     CDS             complement(<1..370)
                     /locus_tag="VE686_12900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011440789.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY85383.1"
                     /translation="MPLAGKGMLITSMDVDPNEEDDFNLWYDREHLAERVAIPGFLEA
                     RRWIADKGETKYFCTYSTDTFEALSSPAYKQVLANQTDWSKKHISSFRNPGRALGRVT
                     VSRGQGRGAALGVVRLRPGVQ"
     gene            complement(442..1869)
                     /locus_tag="VE686_12905"
     CDS             complement(442..1869)
                     /locus_tag="VE686_12905"
                     /inference="COORDINATES: protein motif:HMM:NF015905.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016829 - lyase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MmgE/PrpD family protein"
                     /protein_id="HYY85384.1"
                     /translation="MQSSGTVRDRGVKEFDAVRAFARHISATRFDHLPSEAVERAKTF
                     LLDTVGVGLAGTSDANAARVLSAAAGWGEGQDASVWGHGVRLPAPSAAFVNAYLVHAL
                     EFDCIHERAVVHPMATLIAALLAWCERSSRSGRPVDGSRFLTAMSVGVDTAGLIGAAT
                     KSGLRFFRPATAGGFGAAAALASVAGIDEEKTIDALGIHFGQVSGTMQAHVEGSPSLG
                     LQIAFNARAAVTAIDLAEAGLSGPRDFLNGPFGYFALYENGSFDPAPIEAELGRVPQL
                     TRLSHKPYPTGRLSHGGVDGLRRLMRTHGFTADQVESVVIHAPPVVMRLMGRPDVPEP
                     RSNYAKLCLPFVVGTYLARGRVDVPDFGTPEMLNDPAVHAYAARVSLVPDGNPDQNAI
                     APQRVVVRLKDGAQHEVTIEAIYGHPDAALTEAENVDKFRRCCSYAAVAVPANAQDAL
                     IELISRFEKVEDVAFLARLLPAPVS"
     gene            complement(1886..3937)
                     /locus_tag="VE686_12910"
     CDS             complement(1886..3937)
                     /locus_tag="VE686_12910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011502782.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydantoinase/oxoprolinase family protein"
                     /protein_id="HYY85385.1"
                     /translation="MSYRIGIDVGGTFTDLVLVDDAGRVTHTKSPSTPADQSVGVMEG
                     LALLADLLGIELSPMLARTERIVHGTTVATNALLERRGARVGLLTTAGHIDILEMREG
                     LKDDRYNLRVAPPDPLVPRDRRLGVEERMRPDGRVETPISEASLAHAIDQLRREKVDS
                     VAVCYLHSYRDPTHERTTGEAVRAAMPDAYVSLSSEVMPEIKEYERTCTTVVNAYVGP
                     ALELYLRRLETRLREAGFEGPLLVIQSHGGVATVADAVRLAAGAVLSGPAGGVAGSRH
                     AARLIGHGDLIPFDMGGTSTDISLVVGGEAAIASDRRLAGQRVGLQSLDIVSIGAGGG
                     SMARVDAGGVLHVGPESSGAVPGPACYGRGGTVATVTDANLVLGYLDAASFLGGRSRL
                     DTEAAERAVDRIAEALRVDRMTAAEGIHRVVNTRMAEGIRLVSVRRGIDPRRFALLSF
                     GGAAGLHITDIARQLDLRRVVVPRLAAVLSAWGMLASDLRYEVARTHVGDTSALAADD
                     LRRIFDEMEVEGRRRLADARFEGAVHVRRSADMRYGEQIFEIPVPLDGVDWAGEDLVR
                     QIGDAFHARHEALYTYALPDQEAVLVNARLAVIGELPPMPSEAPRSSGTPVPARSRRR
                     CHIGAWRELDVYGFDDLAAGQVVEGPAIVESSTTTVLLRQGDRAEATPLGWLDVAVAE
                     R"
     gene            complement(3941..>4461)
                     /locus_tag="VE686_12915"
     CDS             complement(3941..>4461)
                     /locus_tag="VE686_12915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016848223.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="hydantoinase B/oxoprolinase family protein"
                     /protein_id="HYY85386.1"
                     /translation="FIWHLFQARPGGGASLAGDGWPGAGEWQAAGGIKFGSIEVAEVR
                     FPLFFRRHQFRTSSGGDGRFRGGPGGDLEFAVEVAEPAVGNTAGDGVKYGACGILGGE
                     DGAPHRYVLRSAAGGERELKTKEAGIVIRPGDVIAAKSGGGGGWGDPARRSAEERARD
                     VTLGFVAAGRER"
BASE COUNT          675 a         1565 c         1581 g          640 t
ORIGIN      
        1 cctgcacgcc gggccggagc cgcacgacgc cgagcgccgc accacgccct tggccccggc
       61 tgaccgtcac gcgtccgagc gcacggcccg gattgcggaa gctcgagatg tgcttcttgg
      121 accagtccgt ctggttggcg agcacctgct tgtaggcggg gctgctcagg gcctcgaacg
      181 tgtccgtcga ataggtgcag aagtacttcg tctcgccctt gtcggcgatc cagcgccgcg
      241 cctcgaggaa cccgggaatg gctacccgct cggcgaggtg ctcgcggtcg taccaaagat
      301 tgaagtcgtc ttcctcgttc gggtccacgt ccatcgacgt gatgagcatt cccttgccgg
      361 ccagaggcat tcgtcgaagc tcctatcgtg cgagacggaa agcgcggtcc gtctcgacaa
      421 gccacgatca agcgcttgcc gtcaactcac cggagcggga aggagccgcg ccaggaaggc
      481 gacgtcctcg accttctcga aacgcgagat cagctcgatg agggcgtcct gcgcgttcgc
      541 cgggacggcc acggccgcgt aggagcagca ccggcgaaac ttgtccacgt tctcggcttc
      601 ggtcagcgcc gcatccgggt ggccgtagat cgcctcgatc gtaacctcgt gttgcgcgcc
      661 atccttcaag cgcacgacca cgcgctgcgg cgcgatggca ttctggtccg ggttgccgtc
      721 cggaacgagg ctgacccggg ccgcgtacgc gtgcaccgcg ggatcgttca gcatctccgg
      781 cgtgccgaag tcgggcacgt cgacccggcc ccgcgcgaga taggtcccca cgacgaacgg
      841 caggcagagc ttggcgtagt tggaacgcgg ctcgggcaca tcggggcgcc ccatcagccg
      901 catgaccacc ggcggcgcgt ggatgacgac ggactcgacc tggtctgccg taaagccatg
      961 cgtgcgcatg agacggcgca gcccgtcgac gccgccgtgg ctgagcctgc cggtcgggta
     1021 cggcttatgg gacagtcgcg tgagctgcgg cacgcgcccg agctcggcct caatcggcgc
     1081 cggatcgaag gagccgttct cgtacagcgc gaagtacccg aacggcccgt tgaggaaatc
     1141 gcgcggtccg ctgagccccg cctcggcgag gtcgatggcc gtcactgccg cgcgcgcatt
     1201 gaaggcgatc tgcaacccga ggctcgggga gccttcgaca tgcgcctgca tcgtcccaga
     1261 cacctggccg aaatggatgc cgagggcgtc gatagtcttc tcctcatcga tgccggcgac
     1321 gctggcgagc gcggctgcgg cgccgaagcc gccggctgtc gcaggccgga agaagcgcag
     1381 gcccgatttc gtcgccgcac cgatgagtcc cgccgtatcg acgccgacgc tcatggcagt
     1441 caggaagcgg gatccgtcca cgggcctgcc gctccgggac gagcgctcgc accaggcgag
     1501 caaggcggcg atcagcgtcg ccatcgggtg cacgacggcg cgttcgtgga tgcagtcgaa
     1561 ctcgagcgcg tggacgaggt aggcgttgac gaaagctgcg gacggcgcag gcagtcggac
     1621 gccgtgcccc catacgctcg cgtcctgccc ctcgccccag cctgccgccg ccgacaacac
     1681 ccgtgcggcg ttcgcatcgg aggtgccggc gaggccgacg ccgacggtgt cgagcaggaa
     1741 ggtctttgcc cgctcgaccg cctcgctcgg gagatggtcg aagcgcgtcg ccgagatatg
     1801 gcgcgcgaag gcgcgcaccg catcgaactc cttcacgccc cggtctcgaa cggtgccgct
     1861 ggattgcatg aagccgatct ctccgtcagc gctcggcgac cgcgacgtcg agccacccga
     1921 gcggcgtcgc ctcggcgcga tcgccctggc gcagcaggac cgtggtggtg gacgactcga
     1981 cgatcgcagg accctcgacg acctggcctg cggcgagatc gtcgaagccg tacacgtcga
     2041 gctcgcgcca ggcgccgatg tggcagcgcc ggcgcgagcg agcaggaacg ggcgttcctg
     2101 agctgcgggg ggcctcggac ggcatcggag gcagctcgcc gatcacggca agacgtgcgt
     2161 tgacgagcac ggcctcctga tcgggcagtg cgtaggtgta gagcgcctcg tggcgggcgt
     2221 ggaaggcatc gccgatctgg cggacgaggt cctcgccggc ccagtcgacg ccatcgaggg
     2281 ggacggggat ttcgaagatc tgctcgccgt agcgcatgtc ggcggagcgt cgcacgtgca
     2341 ccgcaccttc gaaccgcgcg tcggcaagcc tgcgccggcc ctccacctcc atctcgtcga
     2401 agatgcgccg cagatcgtcc gcggcgagcg cgctggtgtc gccgacgtgg gtgcgggcga
     2461 cctcgtagcg cagatcgctg gccagcatcc cccatgccga gagcacggcg gcgagccgcg
     2521 gcaccaccac ccggcgcaag tcgagctggc gagcgatgtc ggtgatgtgc aggccggcgg
     2581 cgcccccgaa cgagaggagc gcgaaacgtc ggggatcgat gccgcggcgg accgagacga
     2641 gccggatgcc ctcggccatg cgggtgttga cgacccgatg gatgccctcg gcggcggtca
     2701 tgcggtcgac ccggagcgcc tcggcgatcc tgtccaccgc gcgttcggcc gcttcggtgt
     2761 cgagccggga gcggcctccg aggaagctgg ccgcgtcgag atagccgaga accaggttgg
     2821 cgtccgtcac ggtcgcgact gtgccgccgc ggccgtagca ggcggggccc gggaccgctc
     2881 cggagctctc aggcccgacg tgcaggacgc cgccggcatc gacgcgcgcc atcgagccgc
     2941 cgcccgcacc gatgctgacg atatcgaggc tctgcaagcc gacccgctgt ccggcgagcc
     3001 ggcggtccga ggcgatggcg gcctcgccgc cgacgacgag ggagatgtcg gtgctcgtcc
     3061 cgcccatgtc gaagggaatg aggtcgccgt gcccgatcag ccgcgccgca tggcggcttc
     3121 ccgcaacccc gccggcggga ccggacagca cggcgccggc cgcaagtcgg acggcgtccg
     3181 ccacggtggc gacgccgcca tgcgactgga tgacgagcag cggcccctcg aacccggcct
     3241 cgcgcaggcg cgtctcgagc cgcctcaggt agagctcgag cgccggcccg acgtaggcat
     3301 tcacgaccgt cgtgcaggta cgctcgtact ccttgatctc gggcatgacc tccgacgaga
     3361 gcgagacgta ggcgtcgggc atggccgcgc ggaccgcctc gcccgtcgtg cgttcgtggg
     3421 tcggatcgcg gtagctgtgc aggtagcaga ccgcgacgga gtcgaccttt tcgcgcctca
     3481 gctggtcgat ggcgtgcgcg agcgacgctt cgcttatggg cgtctcgacg cggccgtccg
     3541 gccgcatgcg ctcctcgacg ccgaggcggc gatcacgggg cacgagcggg tcgggcggcg
     3601 cgacacgcag gttgtagcgg tcgtccttca gcccctcgcg catttccagg atgtcgatgt
     3661 ggcctgcggt ggtcagcagt ccgacccgcg cgccccggcg ttcgagcagc gcgttggttg
     3721 cgacggtcgt gccgtggacg atgcgctcgg tccgggcaag catcggcgag agctcgatgc
     3781 ccagcaggtc cgcaaggagt gccaggccct ccatcacgcc cacggactgg tcggccggcg
     3841 tcgagggaga cttcgtgtgg gtgacgcgtc cagcgtcgtc gaccaggacg aggtcggtga
     3901 acgtcccgcc gacgtcgatg ccgatccggt acgacatcga tcagcgctcc cgcccggcgg
     3961 cgacgaagcc gagagtgacg tcgcgtgcac gctcctcggc actgcgccgg gccggatcgc
     4021 cccagccgcc gccgccgccg gacttcgccg cgatgacgtc gccgggtcgg atgacgatgc
     4081 cggcctcctt ggtcttcagc tcgcgctccc cgcccgcggc cgagcgcagc acgtagcggt
     4141 gcggcgcgcc gtcctctccg ccgaggatgc cgcaggcgcc gtacttcacg ccgtcgcccg
     4201 cggtgttgcc gaccgccggc tcggccacct ccactgcgaa ttcgaggtcg ccgcccgggc
     4261 cgccacgaaa ccgcccgtcg ccgccgctgc tggttctgaa ctggtgacgc cggaagaaca
     4321 gcgggaaccg tacttcggcg acctcgatgc tgccgaattt gattccgccc gcagcctgcc
     4381 actcgccggc gccgggccag ccgtcgccgg caagcgacgc gccgccgccc ggacgagctt
     4441 ggaacaagtg ccagatgaaa g
//
LOCUS       DASQWN010000693         2766 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_184512, whole genome shotgun sequence.
ACCESSION   DASQWN010000693 DASQWN010000000
VERSION     DASQWN010000693.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2766)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2766)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2766
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_184512"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..181)
                     /locus_tag="VE686_12920"
     CDS             complement(<1..181)
                     /locus_tag="VE686_12920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020094081.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD binding domain-containing protein"
                     /protein_id="HYY85387.1"
                     /translation="MKPFTYERARSPAEAAAAAARNPEAKFIAGGTNLLDLMKLQIET
                     PRHLIDVNCLALDRIE"
     gene            complement(178..849)
                     /gene="paoA"
                     /locus_tag="VE686_12925"
     CDS             complement(178..849)
                     /gene="paoA"
                     /locus_tag="VE686_12925"
                     /EC_number="1.2.99.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013165232.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0047770 - carboxylate reductase activity
                     [Evidence IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase iron-sulfur subunit PaoA"
                     /protein_id="HYY85388.1"
                     /translation="MSESHRSANASSDVTRRELVQGATVVGSALLGGQLMPGAISPAA
                     AQGSAQRTPAPLAVMLRVNGTDQRLTLDPRTTLLDALREQLQLTGTKKGCDHGQCGAC
                     TVIVDGRRINSCLTLAVMHEGENVTTIEGLGTPENLHPMQAAFVKHDGYQCGYCTPGQ
                     IVSAVATLDEIKAGIPSHVTADLTAPPQLTEAEIRERMSGNICRCGAYSNIVEAIVEV
                     AGRQG"
     gene            complement(1040..1354)
                     /locus_tag="VE686_12930"
     CDS             complement(1040..1354)
                     /locus_tag="VE686_12930"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018481370.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004497 - monooxygenase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="putative quinol monooxygenase"
                     /protein_id="HYY85389.1"
                     /translation="MPVNYVQVAEIEIDSAHLENYQAAVKEHIETALRVEPGVLVLYA
                     VSEKDNPTNVRVFEVYASADAYKAHLEAPHFKKYKSTTEKMVRSLRLVQATPIALGAK
                     LR"
     gene            complement(1546..2322)
                     /locus_tag="VE686_12935"
     CDS             complement(1546..2322)
                     /locus_tag="VE686_12935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007615265.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051920 - peroxiredoxin activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="carboxymuconolactone decarboxylase family
                     protein"
                     /protein_id="HYY85390.1"
                     /translation="MKRFVTAIASLFLAASSAQAQQPDLGNRRLSPEDVRAVAPALEK
                     YTQDHLYGEVWKRPGLSRRDRSIVSLAVLITRNQFPPLSYYLGQALDNGVKPAEVSEL
                     IVHLAFYAGFANAFGAIGPARDVFAQRGIGPDQIPPASPQLLALDAAAEAQRAARVEE
                     TAGPVSPGLVKDTGELLFNDLWLRPGLAPRDRGLVTVSSLIASGQVAQMPYHLNKALD
                     NGLTKSEASEVISHVAFYAGWPNTFSAVPVAKSVFDGRAK"
     gene            complement(2360..>2766)
                     /locus_tag="VE686_12940"
     CDS             complement(2360..>2766)
                     /locus_tag="VE686_12940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011975041.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="cupin domain-containing protein"
                     /protein_id="HYY85391.1"
                     /translation="AESTQISPNGSRPSAKGSAQYFTGSVIVDPLYAANDSTSSSGGL
                     VTFEPGARSAWHTHPAGQVLIVTSGTGWVQEEGGQKREIKPGDVIWTPPGVKHWHGAT
                     AANAMSHIAITNMIGGKNVDWMEKVGDEQYLK"
BASE COUNT          453 a          858 c          898 g          557 t
ORIGIN      
        1 gctcgatcct gtcgagcgca aggcaattca cgtcgatcag gtgcctcggc gtctcaatct
       61 gaagcttcat gagatcgagc aggttcgtgc cgcctgcaat gaacttggcc tcgggattgc
      121 gcgcggcggc cgcggcagcc tcggctgggg agcgcgcacg ttcgtaggtg aagggcttca
      181 tccctgcctc ccggcgactt cgacgatcgc ttcgacgatg ttggaatagg caccgcagcg
      241 gcagatgttg ccgctcatac gctcgcggat ctcagcctcg gtgagttgcg gcggcgcggt
      301 gaggtcggcc gtgacatggc tcgggatgcc ggccttgatc tcgtccagcg tggcaacggc
      361 tgatacgatc tggcccggcg tgcaatagcc gcactggtag ccgtcatgct tcacgaaggc
      421 ggcctgcatc ggatgcaggt tctcgggcgt gcccagccct tcgatggtcg tcacgttctc
      481 gccttcgtgc atgacagcga gcgtcaggca ggagttgatg cgtcgtccgt cgacgatgac
      541 cgtgcaggcg ccgcactggc cgtggtcgca gcccttcttg gtcccggtga gctgcagctg
      601 ctcgcgcaat gcgtcgagga gggttgtacg cggatcgagc gtgagccgtt ggtcggttcc
      661 gttcacgcgc agcatgaccg cgagcggcgc cggcgttcgt tgagcactac cctgtgccgc
      721 ggccggcgag atagctccag gcatgagttg tcctcctagg agagcgctgc cgactacggt
      781 tgccccttgc acgagttctc gccgggtcac atcggagctg gcgttcgcgc ttctatggct
      841 ttcagacatg tcgattgatc gctttcgcaa tgaggagact taaggagctg gacgcatgag
      901 ttgttccgga ttccgcctgg atctctgctt ctccaaagcc cggatgacgt gatcgtcatc
      961 atggtgtgcc gccgccgagg cccgagtagg tcagcggtgg tctatcccgc cgccggcggc
     1021 aggagagcgg accgggtcgt cacctaagtt tcgccccaag cgcaatcgga gtcgcttgga
     1081 ccagtcggag cgacctgacc atcttctcgg tggtactctt gtactttttg aagtgagggg
     1141 cttccaagtg cgccttgtat gcgtccgcgc tggcgtacac ttcgaagacc cggacgttgg
     1201 tcggattgtc cttttcggac acggcataga ggaccagcac tcctggttcg acgcgaaggg
     1261 ctgtctcgat gtgctccttc accgctgcct ggtagttttc caagtgcgcg gaatcgatct
     1321 cgatctctgc tacctggacg tagttcactg gcatctcctg agcgacggcg ccgcgggacg
     1381 atgcgaccag cacggaggcg cccaggatga gaagcagctt aggtttcatg gtggacccct
     1441 agtgcctcgc cgacgatgta cggtccggcg gcgccaagga cagcgccgct cgggcagcag
     1501 aatcgtcacg gaggcgcgtt ggatgcgcgg atcgtgcttc ggctttcact tcgcacggcc
     1561 atcgaacacg cttttggcga ccggcacggc tgagaaggtg ttcggccatc cggcatagaa
     1621 agcaacgtgc gagatgacct cggacgcctc gctcttggtg aggccgttat ccagcgcttt
     1681 gttcaggtgg tagggcatct gcgcaacctg ccctgatgcg ataagcgagc tcacggtcac
     1741 gaggccgcgg tcgcgcggag cgagaccagg gcggagccaa aggtcgttga acaggagctc
     1801 acctgtgtcc ttcactaggc ccggcgacac cggcccggca gtctcctcca cccgtgccgc
     1861 ccgctgcgcc tctgcggccg catcgagggc caggagctga ggtgaggcag gcggaatctg
     1921 atcaggtccg atcccacgct gcgcgaagac gtcccgtgcc ggtccgatcg ccccgaaggc
     1981 attggcgaag cccgcataga aggcgaggtg gacgatgagc tcggagactt cggccggctt
     2041 gaccccgttg tcgagcgcct ggccgagata gtagctcaac ggcggaaact ggttccgcgt
     2101 gatcaggacg gcgaggctca cgatgctgcg gtcgcggcgc gacaagcccg gtcgtttcca
     2161 aacttcgccg tagaggtggt cctgcgtgta cttctcgaga gcgggcgcga ccgcccggac
     2221 gtcctcgggc gagagcctgc gattcccaag gtcaggctgc tgggcctgag ctgatgacgc
     2281 cgcgagaaac agcgatgcaa tcgcggtaac gaaccgtttc atttcgaatc tcctatcgcc
     2341 cattgcgcag cgccgctcgt catttcaggt attgctcgtc gccgaccttc tccatccagt
     2401 cgacgttctt gccgccgatc atgttggtga tcgcgatgtg actcatggca ttggccgctg
     2461 tcgctccgtg ccaatgcttc accccgggcg gcgtccagat cacgtcgccc ggcttgatct
     2521 cgcgcttctg accaccctcc tcctgtaccc accccgtccc agacgtgacg atcagcactt
     2581 ggcccgcggg atgggtgtgc catgccgagc gtgctcccgg ctcaaacgtc acaagccctc
     2641 ccgatgacga ggtgctgtcg ttcgccgcat acagcgggtc cacaatgacg gacccggtga
     2701 agtactgagc cgatcctttg gcagaaggcc gtgagccgtt cggcgagatc tgcgtgcttt
     2761 cggcgg
//
LOCUS       DASQWN010000694         4936 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_578177, whole genome shotgun sequence.
ACCESSION   DASQWN010000694 DASQWN010000000
VERSION     DASQWN010000694.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 4936)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4936)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4936
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_578177"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            179..1357
                     /locus_tag="VE686_12945"
     CDS             179..1357
                     /locus_tag="VE686_12945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018269423.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class V-fold PLP-dependent
                     enzyme"
                     /protein_id="HYY85392.1"
                     /translation="MTGHEFLHSPGPTHIPDRVLRAMHRQPLDLVDGRLKAIAKSCFD
                     DLRDVFRTSGKVFIYAANGHGGWEAALANICVPGDMVLVPEIGHFSASWADHARALGL
                     ETEVIPGDWRQAVDPQRITERLREDRAGRIKAVLAVQVDTGTAVASDIAAIRAAIDAA
                     GHPALLVADTIASLAAMPFEMDAWGVDVAIAASQKALMCPPGLAIVAANERALAACTA
                     LPRRHRYWDWAPRVGDEYYTLFCGTMPEHLMFGLREALDIIKEEGLPAICRRHRRLAG
                     AVHAAVEVWSEAGALSFNATVPAQRAVSVTAIRTTEGIDATAIRTHARETLGVSVAGG
                     LGALSGKAFRIGHLGDLNEPMVLGCLAAIEVAFIELGVPHGRNGVRAAVEHLAKARAE
                     "
     gene            1453..1707
                     /locus_tag="VE686_12950"
     CDS             1453..1707
                     /locus_tag="VE686_12950"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY85393.1"
                     /translation="MPYPAANASNRSASSLLRRLLGADAKARIAAVLARSPILDLSFV
                     AEAAGLPLRRTRRLLEHLELQGAVLLHATPRRTTVHVLLS"
     gene            complement(1727..2185)
                     /locus_tag="VE686_12955"
     CDS             complement(1727..2185)
                     /locus_tag="VE686_12955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018045953.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="low molecular weight phosphatase family protein"
                     /protein_id="HYY85394.1"
                     /translation="MADEAEPQPKRVQSVLFVCAYNAVRSPMAEALARHYFGKSIYVQ
                     SAGVRKGDLDPFMVAALDEIGIDASKQKPRTLAELEEWEGLNFDLIVSLSPEAHHAAL
                     ERTRTVAADVEYWPTPDATIAQGTREQRLDAYRNVRDGLSYRIRLRLKSA"
     gene            complement(2190..2672)
                     /locus_tag="VE686_12960"
     CDS             complement(2190..2672)
                     /locus_tag="VE686_12960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015931288.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UPF0262 family protein"
                     /protein_id="HYY85395.1"
                     /translation="MPDDNTKHRLVAVTLDEDSIGRGNPDQEHERAIAIYDIVEANSF
                     AIPGHDGGPYAVRLALVEKKLSFEISTADGRPVMTHLLSLSPFKTVIRDYKLVCDSYY
                     KAIRTASPAQIEAIDMGRRGLHDEAAELLRQRLDGKVAVDFDTARRLFTLIFALQWRG
                     "
     gene            complement(2803..3420)
                     /gene="gstA"
                     /locus_tag="VE686_12965"
     CDS             complement(2803..3420)
                     /gene="gstA"
                     /locus_tag="VE686_12965"
                     /EC_number="2.5.1.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009763841.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_process: GO:0006749 - glutathione metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione transferase GstA"
                     /protein_id="HYY85396.1"
                     /translation="MKLYYAPGACSLAPHIVAREAGLTLDLDKLDFATRITQGGEAFA
                     DVNPKGYVPALRLDDGSVLTEVATLVQYLADQAPQSGLAPANGTLERYRLQEWLTFIS
                     TEIHKGFGPLWNPALPDASKEAAKAHLSKRFAYLDGQLKDRPYLTGDRFSAADAYLFT
                     VVNWTNMHNIDLKPYPALKAFMDRVAARPAVRQALEAEGLLKQAA"
     gene            3549..4064
                     /locus_tag="VE686_12970"
     CDS             3549..4064
                     /locus_tag="VE686_12970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011662126.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family transcriptional regulator"
                     /protein_id="HYY85397.1"
                     /translation="MDARPSEAAVQAWARLVRVSGALLDAVEAELKAAGFPALGWYDA
                     LLELDRSPEGRLRPFELERHMLLPQYSTSRLIDRLEKAGFVERRDCEIDGRGLHVAIT
                     QAGRDLRRRMWPAYAAAIERHVGSKIGCTDAQKLADLLGRLSASACDRILSAAGETGA
                     PGQVPQAALKD"
     gene            complement(4054..>4936)
                     /gene="hisD"
                     /locus_tag="VE686_12975"
     CDS             complement(4054..>4936)
                     /gene="hisD"
                     /locus_tag="VE686_12975"
                     /EC_number="1.1.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015822557.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004399 - histidinol dehydrogenase
                     activity [Evidence IEA];
                     GO_process: GO:0000105 - histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="histidinol dehydrogenase"
                     /protein_id="HYY85398.1"
                     /translation="YPSSVLMNAVPAKVAGVPRVVMVAPTPRGETNPLVLAAARLAGV
                     DEIYRIGGAQAVAALAYGTASIAPVVKIVGPGNAYVAAAKRRVFGQVGIDMIAGPSEV
                     LILADATANPDWIAADLLAQAEHDAAAQAILITDAPHIADAVEGAVERQLALLPRRDI
                     AAASWRDFGAVILVARLADAVPLVDRLAPEHLEIEARDADALSAAVRNAGSIFLGSHT
                     PEAIGDYVGGPNHVLPTARSARFSSGLGVLDFLKRTSILKCDAQALRTLGPAAMALAR
                     AEGLEAHARSVAIRLNL"
BASE COUNT          731 a         1688 c         1744 g          773 t
ORIGIN      
        1 taggcctctc tcgcttgaat aggggctttc ggccaacgcc gctggtcgtc ctgccccgga
       61 gcctcgctgg agtttcgcgc acgtgcatcc cctctccgcc ttccgggaga ggggcgcagg
      121 gtttgaggca cggcgcggcc gcgccgtata cggcgggccg aggctacgag gagcacccat
      181 gaccggccac gagttccttc attcgccggg gccgacgcat attcccgacc gggtgctgcg
      241 ggcgatgcac cggcagccgc tcgacctcgt ggacgggcgg ctcaaggcca ttgccaagtc
      301 gtgcttcgac gatctgcgcg acgtctttcg cacctccggc aaagtcttca tctacgcggc
      361 gaacgggcac ggtggctggg aggcggcgct ggccaacatc tgcgtgccgg gcgacatggt
      421 gctcgtgccc gagatcgggc atttctcggc gagctgggcc gaccacgccc gggcactcgg
      481 gctcgagacc gaggtgatcc caggcgactg gcgccaggcc gtcgatccgc agcggatcac
      541 cgagcggctg cgggaagatc gagcgggccg catcaaggcg gtgctcgccg tccaggtcga
      601 caccggcacg gcggtggcga gcgacatcgc cgcgatccgc gccgcgatcg acgcggccgg
      661 ccaccctgcc ctcctcgtcg cggacaccat cgcgtcgctc gcggcgatgc cgttcgagat
      721 ggatgcctgg ggcgtcgacg tggcgatcgc cgcctcgcag aaggccctga tgtgcccgcc
      781 ggggctcgcc atcgtggccg ccaacgagcg cgcgctcgcg gcgtgcaccg ccctgccccg
      841 ccgccaccgc tactgggact gggctccccg cgtcggcgac gagtactaca ccctgttctg
      901 cgggacgatg cccgagcacc tgatgttcgg cctgcgcgag gccctcgaca tcatcaagga
      961 agaaggcttg ccggcgatct gccgccgcca ccgccggctg gcgggagccg tgcacgcggc
     1021 ggtcgaggtc tggagcgagg ctggggcgct gtcgttcaac gctaccgtgc cggcgcagcg
     1081 cgccgtgtcc gtgaccgcga tccgcacgac ggaaggcatc gacgccacgg cgatccgtac
     1141 ccacgcgcgc gaaacgctcg gcgtgtcggt cgccggcggc ctcggcgcgc tctccggcaa
     1201 ggccttccgc atcggccatc tcggcgacct caacgagccc atggtcctcg gctgcctagc
     1261 ggccatcgag gttgccttca tcgagctcgg cgtgccccat ggccgcaacg gtgtacgcgc
     1321 cgcggtggag cacctggcca aggcgcgggc agaatgatgc agacgcgaat ctttccggag
     1381 cgatgaaccg atccggcacc tgccgcgacc aacaggagca acccgcttct gccggtctga
     1441 cggagtgccg ccatgcccta ccctgccgcg aacgcgtcca accgctccgc gagcagcctt
     1501 ttgcggcgcc tgctcggcgc cgacgccaag gctcgcatcg ccgcggtcct cgcccgcagc
     1561 ccgatcctcg acctctcctt cgtcgcggaa gccgccggcc tcccgctacg ccgcacccgt
     1621 cgtcttctcg agcacttgga actgcaaggc gccgttctcc ttcacgccac gccgcgcagg
     1681 accaccgtgc acgtcctgct gagctgagcg ctcctgaggt gccctctcag gcactcttga
     1741 ggcgcaggcg gatgcggtag ctcaagccgt cccggacgtt gcgataggca tcgagcctct
     1801 gctcccgggt accctgcgcg atggtggcgt cgggcgtcgg ccagtattcg acgtcggccg
     1861 cgacggtccg ggtccgctcg agagcggcgt ggtgcgcctc gggggacagc gagacgatga
     1921 ggtcgaagtt cagcccttcc cattcctcga gctcggccag cgtgcgcggc ttctgcttcg
     1981 aggcatcgat gccgatctcg tcgagggcgg caaccatgaa cgggtcgagg tcgccttttc
     2041 gcaccccggc cgactgcacg tagatcgact tgccgaagta gtggcgcgcg agcgcctcgg
     2101 ccatgggcga gcgcaccgcg ttgtaggcgc acacgaacag gaccgactgc acccgcttcg
     2161 gctggggctc cgcctcatcg gccaccccgt cagccccgcc actgcagcgc gaagatgagg
     2221 gtgaacaggc gacgcgccgt gtcgaagtcc acggccacct tgccatcgag gcgttggcgc
     2281 agcagctccg ccgcttcgtc atggaggccg cgacggccca tgtcgatggc ctcgatctgc
     2341 gccggcgagg cggtgcggat ggccttgtag tagctgtcgc agaccagctt gtagtcgcgg
     2401 atcaccgtct tgaacgggct cagcgacagg aggtgggtca tcaccggccg cccatcggcc
     2461 gtgctgatct cgaacgagag cttcttctcc acgagggcaa ggcgaaccgc gtaagggccg
     2521 ccgtcgtggc cgggaattgc gaacgagttc gcctcgacga tgtcgtagat ggcgatcgcg
     2581 cgctcgtgct cctggtcggg attgccgcgg ccgatcgagt cctcgtcgag ggtcacggcg
     2641 acgaggcggt gcttggtgtt gtcgtccggc atcggcgacc cgatcgggca aatccgccgc
     2701 ctctataggg agggcggcgg cgttcgccaa atcatgatgg ccgtcgcgag cgcagccgga
     2761 caccgggccc gggcgtgagc ccgggtccgg tcgcgcggta ggttacgccg cctgcttcaa
     2821 gagcccttcg gcctcgagcg cctggcgcac ggccggccgt gcggcgacgc ggtccatgaa
     2881 ggccttgagg gcgggatagg gcttcaggtc gatgttgtgc atgttcgtcc agttcacgac
     2941 ggtgaacagg tacgcgtcag cggccgagaa gcggtcgccg gtgaggtagg gacgatcctt
     3001 cagctggccg tccaggtacg cgaagcgctt cgagaggtgg gccttggcgg cctccttcga
     3061 tgcgtccgga agggccgggt tccacagcgg accgaagccc ttgtggatct cggtcgagat
     3121 gaaggtgagc cactcctgga ggcgatagcg ctcgagcgtc ccgttcgccg gggcgagacc
     3181 cgactgcggc gcctggtccg caaggtattg cacgagggtc gcgacctccg tcaggaccga
     3241 gccgtcgtcg aggcgcaggg ccggcacgta gcccttcggg ttcacgtccg cgaaggcctc
     3301 gccgccctgt gtgatgcgcg tggcgaagtc gagcttgtcg agatcgagcg tgaggccggc
     3361 ctcgcgggcg acgatatgcg gggcgagcga gcaggctccg ggggcatagt acagtttcat
     3421 gatcacacct cttgcggtcg gaccagaggt ccggcgctgc atcggttgat gcagatgcat
     3481 ggttctagat gcaaatgcat gcgggtgtca atcttgatgc aagtgcattc atgcgctaca
     3541 tgccgtgcat ggacgcaaga ccctcagaag cggccgttca agcctgggcg aggctcgtcc
     3601 gcgtgtcggg cgcgctgctc gacgccgtcg aggcggagct caaggccgcg ggctttccgg
     3661 cgcttggctg gtatgacgct ctgctcgagc ttgaccgctc gccggaagga cgcctccggc
     3721 cgttcgaact cgagcgccac atgctgctgc cgcaatactc cacgtcgaga ctgattgatc
     3781 ggctcgagaa ggctggtttc gtggagcgcc gcgactgcga aatcgacggg cgcggcctgc
     3841 acgtcgccat cacgcaggcc ggccgggacc tgcggcggcg catgtggccg gcctacgcgg
     3901 ccgcaataga acgccacgtc ggctcgaaga tcggctgcac ggacgcgcag aagctcgccg
     3961 atcttctggg ccgcctatcg gccagcgctt gcgaccgcat cctgtccgca gccggcgaga
     4021 ccggagcgcc gggccaggtt ccgcaggcag ccctcaaaga ttgagccgga tcgccacgga
     4081 ccgtgcgtgg gcttcaagcc cctcggcgcg ggcgagcgcc atggcggccg ggccgagggt
     4141 ccggagcgcc tgcgcatcgc acttcaggat cgaggtgcgc ttgaggaagt cgagaacccc
     4201 gaggccggac gagaagcggg ccgagcgtgc cgttggcagc acgtggttcg gcccgcccac
     4261 atagtccccg atcgcctcgg gcgtatggct gccgaggaag atcgagccgg cgttccgaac
     4321 tgcggcgctc aacgcatcgg cgtcgcgcgc ctcgatctcc aggtgctcgg gcgcaagccg
     4381 gtcgacgagc ggcaccgcgt cggcgaggcg cgcgaccagg atgacggcgc cgaagtcgcg
     4441 ccagctcgca gccgcgatgt cgcgccgcgg caggagcgcg agctgccgct cgacggcgcc
     4501 ctcgaccgcg tccgcaatgt gcggtgcatc ggtgatcagg atggcctgcg cggctgcatc
     4561 gtgttcggcc tgggcgagga ggtcggcggc gatccagtcg gggttcgccg tcgcgtccgc
     4621 gaggatcagc acctcggagg ggccggcgat catgtcgatg ccgacttggc cgaagacccg
     4681 gcgctttgcg gcggccacgt aggcgttccc gggccccacg atcttcacga cgggcgcgat
     4741 gctcgccgtg ccgtaggcga gcgccgccac cgcctgggcg ccgccgatgc ggtaaatttc
     4801 gtcaacgccg gcgaggcgcg cggccgcgag cacgagcggg ttcgtctcgc cccgcggcgt
     4861 cggcgccacc atgacgacgc ggggcacgcc cgcgaccttc gccggcacgg cgttcatcaa
     4921 gaccgatgag ggatag
//
LOCUS       DASQWN010000695         3338 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_578897, whole genome shotgun sequence.
ACCESSION   DASQWN010000695 DASQWN010000000
VERSION     DASQWN010000695.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 3338)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3338)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3338
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_578897"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..445
                     /locus_tag="VE686_12980"
     CDS             <1..445
                     /locus_tag="VE686_12980"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="glycosyl transferase family 28"
                     /protein_id="HYY85399.1"
                     /translation="VPHRAWRILIGAGVEEPEFLAIAAAAPAHMRVERARADFRTLLA
                     GCAVSVSQLGYNTAVDLLRTKPRAVFAPFEADGLETEQRLRAERFSALGWGEMIVERE
                     LSPESLAAAVRRAIAAPQRDPVPIRLDGADRSVAIVEELLRQGSR"
     gene            469..1260
                     /locus_tag="VE686_12985"
     CDS             469..1260
                     /locus_tag="VE686_12985"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide deacetylase family protein"
                     /protein_id="HYY85400.1"
                     /translation="MDWSPFADALARARDAGYVPSFWWRDDDATRHTPALDRLLALSG
                     RFGVPLAIAAVPARTEPSLAERLANECRATVLVHGHAHLNHAPPGEKKAEFGAERAFG
                     ELTADAAEGLAAATAAGLPLIPVFVPPWNRAAADLVAALPAVGYRGVSAFKNRAARLA
                     APGLVQVNAHLDPVDWRGGGALLDPSMLVEALARAVVDRTEGRADRGEAIGLLTHHLV
                     HDEAVWAFCESFVEYVSHRCGMRFLPTRVLFDLDGEGRSEPLRHT"
     gene            1260..3179
                     /locus_tag="VE686_12990"
     CDS             1260..3179
                     /locus_tag="VE686_12990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010682632.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HYY85401.1"
                     /translation="MDNPGLAPTPKRAARGDEALLSLRDLAIDFRAESGGFRAVDGLS
                     FDIPKGKTVALVGESGSGKSVTAQAILGILPKAARVSAGSILFRDPRHGGAPVDIAAL
                     DQNGEEIRALRGGRIAMIFQEPMTSLSPLHTIGDQVSEALMLHADVSRAKANARACEV
                     FEKVGFPDPKRALVTYPFELSGGLRQRAMIAMALITKPALLIADEPTTALDVTTQAQI
                     LDLMRDLQAETHMSMLLITHDLGVVANMADEVVVMYRGRVVEAGDRDHIFRNATHPYL
                     KALMRAVPRFSMAPDERLTPIREVKSATLTQLAKEPHAKPDGPVLKVESLCKSFVLRA
                     GWFSGRKRTIHAVNGVSIELPHGTTLGLVGESGCGKTTVSKMIMRAIRPDSGRVLYDG
                     GDGAGLRDVFAFEGEDLTTFRRAVQFVFQDPFSSLNPRMTVYESLTEPLRIHEIGTSD
                     ERYRRATQLLDLVGLDRRSLRRYPHSFSGGQRQRLGIARALALEPKVLLCDEPVSALD
                     VSVQAQVLNLLKDLQAALGLSYLFVSHNLAVVDYIADTIAVMCRGYIVEEAPKVALFR
                     NPVHPYTQALLAAVPDPDIDRPLDFAKLRTESFSDPAQWPEPFRLTDGETGEMSEIEP
                     GHRVRVHRAVAEEAA"
BASE COUNT          483 a         1205 c         1104 g          546 t
ORIGIN      
        1 cgtgccccac cgcgcttggc gcatcctcat cggcgcgggc gtcgaggagc cggaattcct
       61 cgcgattgcc gccgcggcgc ccgctcacat gcgcgtcgag cgtgcccgcg ccgacttccg
      121 caccttgctc gccggctgcg ccgtgtcggt cagccagctc ggctacaaca ccgccgtcga
      181 cctcttgcgg acgaagccgc gggctgtctt cgctccgttc gaagctgacg ggctcgagac
      241 ggagcagagg ctgcgggccg agcgcttcag cgcgctcggc tggggcgaga tgatcgtcga
      301 aagggagctc tcgccggagt cgctcgccgc cgccgtccgc cgcgccatcg cggctcccca
      361 gcgcgatcct gtgccgatcc ggctcgacgg agcagaccgc agcgtggcca tcgtcgagga
      421 actgctgcgg cagggctcgc gatgaccgcc gggccgatcc gtcccagggt ggattggagc
      481 cctttcgcgg acgcgctcgc ccgcgctcgc gacgccggct acgtcccctc gttctggtgg
      541 cgggatgacg acgcgacgcg acacacgcca gccctcgatc ggctgcttgc gctgtcgggc
      601 cggttcggcg ttccccttgc catcgccgcc gtgccggccc gcaccgagcc ctccctcgcc
      661 gagcgacttg ccaacgagtg ccgcgcgacc gtgctggtac acggccacgc tcacctgaac
      721 cacgctcccc ctggtgagaa gaaggccgag ttcggcgcag agcgggcttt cggcgaattg
      781 acggcggacg ccgccgaagg cctcgcggcg gcaactgccg ccgggctgcc tctgatcccc
      841 gttttcgtgc caccgtggaa ccgtgccgcc gcggacctcg tggcggcgct gccggcagtg
      901 ggttaccggg gcgtctcggc tttcaagaac agggcggcgc ggcttgcggc gcccggcctc
      961 gtgcaggtca atgcgcacct cgatcccgtc gactggcgtg gcggcggcgc actgttggac
     1021 ccgtcgatgc tcgtggaggc gcttgcccgc gccgtggtcg accggaccga gggtcgcgca
     1081 gatcggggcg aggccatcgg ccttctcacg caccacctcg tgcacgacga agcggtctgg
     1141 gctttttgcg agtctttcgt cgaatacgtg tcgcaccgtt gtgggatgcg ttttctgccg
     1201 acacgcgtat tgttcgatct cgacggggag ggacgaagcg aaccgcttcg ccacacatga
     1261 tggacaaccc gggcctcgcg cccacaccca aacgagccgc ccggggggac gaggcgcttc
     1321 tgtctctccg tgacctcgcc atcgacttcc gagccgagtc gggaggcttc cgcgcggtcg
     1381 acgggctctc gttcgacatc cccaaaggca agaccgtcgc cctcgtcggc gagtcgggct
     1441 cgggaaagtc cgtcaccgcc caggcgatcc taggaatcct gcccaaggcg gcgcgcgtct
     1501 ccgctggatc gatcctgttc cgcgatccgc ggcatggcgg ggcccctgtc gatatcgcgg
     1561 ccttggacca gaacggcgag gagatccggg cgttgcgcgg cgggcgcatc gcgatgatct
     1621 ttcaggagcc catgacctcg ctgtcgccgc tgcataccat cggcgaccag gtctccgagg
     1681 cgctgatgct gcacgccgac gtcagccggg cgaaggccaa cgcgcgcgcc tgcgaggtct
     1741 tcgagaaagt cggcttcccc gatccaaagc gggcgctcgt cacctacccc ttcgagctct
     1801 cgggcggcct gcgccagcgc gcgatgatcg ccatggcgct gatcaccaag ccggctctgc
     1861 tcattgccga cgagccgaca accgcgctcg acgtgacgac ccaggcgcag atcctcgacc
     1921 tcatgcgtga tctccaggcc gagacgcaca tgtccatgct cctgatcacg cacgacctcg
     1981 gagtggtcgc caacatggcc gacgaggtcg tcgtcatgta tcgcggtcgc gtcgtcgagg
     2041 cgggcgatcg cgaccacatc ttccgaaacg cgacccatcc ctacctcaag gcgctgatgc
     2101 gggcggtccc gcgcttctcc atggcgccgg acgagcgcct caccccgatc cgcgaggtga
     2161 agagcgcgac actgacgcag ctcgcaaagg agccgcacgc gaagcccgac ggcccggttc
     2221 tcaaggtcga gagcctgtgc aagagcttcg tcctccgggc gggctggttc agcggccgca
     2281 agcggaccat ccatgcggtg aacggcgtca gcatcgagct gccgcacggg acgacgctcg
     2341 gactcgtcgg cgagtcgggc tgcggcaaga ccaccgtttc gaagatgatc atgcgcgcga
     2401 tccggccgga cagcgggcgc gtgctgtacg acggcggcga cggcgccggg ctgcgcgatg
     2461 tcttcgcctt cgaaggggaa gacctcacca ccttccggcg agccgtgcag ttcgtgttcc
     2521 aggacccgtt ctcgtccctc aacccacgca tgaccgtcta cgaaagcctg acggagcctt
     2581 tgcgcatcca cgagatcgga acctccgacg agcgctatcg ccgggccacg cagctcctcg
     2641 acctcgtcgg cctcgaccgc cgctcgctgc ggcgctaccc gcattcgttc tcgggcggac
     2701 aacggcagcg cctcggcatc gcccgcgcgc tcgcgctcga gccgaaggtg ctgttgtgcg
     2761 acgagcccgt ctcggccctt gatgtgtcgg tccaggccca ggtgctgaac cttctcaagg
     2821 acctgcaggc ggcgctcggg ctatcgtatc tcttcgtctc gcataaccta gcggttgtcg
     2881 attacattgc ggacacgatc gccgtcatgt gccgcggcta catcgtcgag gaggcgccga
     2941 aggtggctct gttccgcaac cccgtccatc cctacacgca ggccctgctg gctgccgtgc
     3001 cggacccgga catcgaccgg ccgctcgact tcgccaagct ccgcacggag agcttttccg
     3061 atcccgcgca gtggccggag cccttccggc ttacggacgg cgagaccggg gagatgtcgg
     3121 agatcgagcc cggccaccgg gtgcgcgtgc atcgcgccgt cgccgaggag gccgcgtgat
     3181 gccccgccgc gcggtcgcga ccgtcctcgc cttcgcgtcg ctgtgttgcg gcgccctggc
     3241 ccaggcttac gtcgaacccc cgtttctcgc cgagcgtgtc gtcaagaagg agctgccgcc
     3301 tgtcggcgag cgggttccga aggcgcccct cgtcgtcg
//
LOCUS       DASQWN010000696         2655 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_186726, whole genome shotgun sequence.
ACCESSION   DASQWN010000696 DASQWN010000000
VERSION     DASQWN010000696.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2655)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2655)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2655
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_186726"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..243
                     /locus_tag="VE686_12995"
     CDS             <1..243
                     /locus_tag="VE686_12995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014132506.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY85402.1"
                     /translation="RYNDRRWTLWQYTTTGRVPGIRGDVDRNAFYGSKDDWAQFAQIG
                     CDTRFRHCATQLARARQGGSTQLAYAAMHEGAAADE"
     gene            complement(296..1588)
                     /locus_tag="VE686_13000"
     CDS             complement(296..1588)
                     /locus_tag="VE686_13000"
                     /EC_number="3.5.2.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019403545.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004151 - dihydroorotase activity
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006221 - pyrimidine nucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroorotase"
                     /protein_id="HYY85403.1"
                     /translation="MSATVLTNARLIDPASGREEPGAVLIQDGLVADVAWGAQAEPPE
                     GATVLDCGGHILAPGLVDMRAFVGEPGAEHRETLKTASEAAAAGGVTTLVCMPDTNPV
                     IDDPAIVDFVRRRARDTAIVNICPAAALTKGLHGREMTEFGLLAEAGAIAFTDGARSV
                     TNAQVMRRALAYARDFGALIIHHVEDPNLVGDGVMNEGEFASRLGLHGIPREAETVML
                     ERDLRLVRLAGGRYHAAMVSCADSVEIVRRAKQGGLPVTCGVSINNLTLNENDIGDYR
                     TFLKLSPPLRHEDDRQAVIAGLADGTIDVVVSDHNPQDVETKRLPFAEAADGALGIET
                     VLAAGLRLVHGGQITLSRLLLALSTRPAEILGLAAGCLAPGAPADLIVFDPDEPYVLD
                     KKDLRSRSKNSPFDEARLQGRVLLTMVGGRIVHDRSGV"
     gene            complement(1585..2529)
                     /locus_tag="VE686_13005"
     CDS             complement(1585..2529)
                     /locus_tag="VE686_13005"
                     /EC_number="2.1.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003599343.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004070 - aspartate carbamoyltransferase
                     activity [Evidence IEA];
                     GO_function: GO:0016597 - amino acid binding [Evidence
                     IEA];
                     GO_process: GO:0006207 - 'de novo' pyrimidine nucleobase
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:0006520 - amino acid metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate carbamoyltransferase catalytic
                     subunit"
                     /protein_id="HYY85404.1"
                     /translation="MTAPRPVYPHRHLLGIEGLSPHDIEALLALSEEQVEVSRQVEKK
                     KATLRGRTQINLFFEPSTRTQSSFELAGKRLGADVMNMSVASSSVKKGETLIDTAMTL
                     NAMRPDIIIVRHHAAGAVHLLARKVDCSVVNAGDGAHEHPTQALLDALTIRRNKGRIA
                     GLLVAICGDILHSRVARSNIILLQALGARVRLIGPRTLLPPEAERLGVEVFTDMRQGL
                     KGADIIIMLRLQRERMNGSFVPSVKEYFRYWGLDQEKLALAQPDALVMHPGPMNRGVE
                     ISSEVADGAQSLIREQVEMGVAVRMAVLEALASHLPNR"
BASE COUNT          405 a          887 c          977 g          386 t
ORIGIN      
        1 cgctacaacg accggcgctg gacgttgtgg cagtacacca ccacaggccg cgtgccgggc
       61 atccgaggcg acgtcgaccg caacgccttc tacggctcca aggacgactg ggcgcagttc
      121 gcgcagatcg gctgcgacac ccggttccgc cattgcgcga cgcaactcgc ccgcgctcgc
      181 caggggggca gtacgcaact cgcgtacgcg gcgatgcacg agggcgcggc cgcggacgaa
      241 tagcgagcgc ctcgctcttt cgagcctcgc gtcggcgagc cgcctggtgc gagcctcaaa
      301 cgcctgagcg gtcgtggacg atgcggccgc cgaccatcgt gagaaggacc cggccctgca
      361 ggcgcgcctc gtcgaagggc gagttcttgg agcgggagcg caggtccttc ttatcgagga
      421 cgtagggctc gtccggatcg aacacgatga ggtcggccgg cgcacccggg gcgaggcagc
      481 ccgccgccag cccgaggatt tcggccgggc gggtcgacag agccaatagc agccgcgaca
      541 gcgtgatctg cccgccatgg accaggcgca gacccgccgc gagcacggtc tcgatgccga
      601 gggccccgtc cgccgcctcg gcgaagggca ggcgcttcgt ctcgacatcc tgcgggttat
      661 gatccgacac gaccacgtcg atcgtcccgt cggcgaggcc ggcgatgacg gcctgccggt
      721 cgtcctcgtg acgcaggggc ggcgagagct tgaggaacgt gcggtagtcg ccgatgtcgt
      781 tctcgttgag cgtcaggttg ttgatcgaga cgccgcaggt gacgggaagg cccccctgct
      841 tggcgcgccg cacgatctcg accgaatcgg cgcacgacac catggcggcg tggtagcgcc
      901 cgccggcgag gcgcacgagc cgcaggtcgc gctcgagcat caccgtctcg gcctcgcgcg
      961 ggatgccgtg caggccgagg cgcgaggcga actcgccctc gttcatcacg ccgtcgccga
     1021 cgaggttggg atcctccacg tgatggatga tgagcgcgcc gaagtcccgg gcgtaggcga
     1081 gcgcgcggcg catgacctga gcgttggtga ccgagcgggc gccgtccgtg aaggcgatgg
     1141 cgcccgcttc ggcgagaagg ccgaactcgg tcatctcgcg gccgtgcagg cctttggtca
     1201 gggcggcggc ggggcagatg ttgacgatgg cggtgtcgcg cgcgcgccgg cgcacgaagt
     1261 cgacgatcgc cggatcgtcg atgaccgggt tggtgtcggg catgcacacg agcgtcgtga
     1321 cgccgccagc agcggcggcc tcgctcgcgg tcttcagggt ctcgcggtgc tcggccccgg
     1381 gctcgcccac gaaggcgcgc atgtcgacaa gtcccggcgc gaggatgtgc ccgccgcagt
     1441 cgaggaccgt cgcgccctcg ggtggttccg cctgcgcacc ccaggccaca tcggcgacaa
     1501 ggccgtcctg gatgaggacc gcgcccggct cttcccggcc cgaggcgggg tcgatcaggc
     1561 gggcattggt caggaccgtt gcactcatcg gttcggcagg tggcttgcga gcgcctcgag
     1621 caccgccatt cgcacggcga cgcccatctc gacctgctcg cggatgagcg actgcgcgcc
     1681 gtcggcgacc tcggaggaga tctcgacgcc gcgattcatg ggcccgggat gcatgacgag
     1741 cgcgtccggc tgtgcgagcg cgagcttctc ctggtcgaga ccccagtagc ggaaatactc
     1801 cttcaccgag ggcacgaagg agccgttcat gcgctcgcgc tggaggcgca acatgatgat
     1861 gatgtcggcg cccttgaggc cctggcgcat gtcggtgaac acctcgaccc cgaggcgttc
     1921 ggcttccggc ggcagaaggg tgcgcggccc gatgaggcgc acgcgcgctc caagggcctg
     1981 caaaaggatg atgttcgagc gcgcgacccg cgagtgcagg atgtcgccgc agatcgccac
     2041 gagcagcccc gcgatacggc ccttgttgcg gcggatcgtg agggcgtcga ggagcgcctg
     2101 cgtcgggtgc tcgtgcgcgc cgtcgccggc gttgacgacg gagcagtcga ccttccgggc
     2161 gaggaggtgg acggcgccgg cggcgtggtg gcgcacgatg atgatgtcgg gccgcatggc
     2221 gttcagcgtc atggcggtgt cgatgagcgt ctcgcccttc ttcaccgacg acgaggcgac
     2281 cgacatgttc atgacgtcgg cgccgaggcg cttgccggct agctcgaacg acgactgggt
     2341 gcgcgtggac ggctcgaaga agaggttgat ctgggtccgg ccgcgcaggg tggccttctt
     2401 cttctcgacc tggcggctga cctcgacctg ctcctcggac agcgcgagca gcgcctcgat
     2461 gtcgtgaggc gacaagccct cgatcccgag caggtgccgg tgcgggtaga cggggcgcgg
     2521 cgcggtcatg ctgaagcgat ggctataggg acacgcgccc gctccggcaa gcgccctccg
     2581 ccctccaccc accgagaagc gccgaccaca agaggcccgt cccgagagcg agagggcgga
     2641 ggcggtcccg cacgc
//
LOCUS       DASQWN010000697         3298 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_189478, whole genome shotgun sequence.
ACCESSION   DASQWN010000697 DASQWN010000000
VERSION     DASQWN010000697.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 3298)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3298)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3298
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_189478"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..217
                     /locus_tag="VE686_13010"
     CDS             <1..217
                     /locus_tag="VE686_13010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014891029.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="amidase family protein"
                     /protein_id="HYY85405.1"
                     /translation="PYLDLTKWSSLATGADLPAAVAPVMRSAAGLPVGVQIIARKGGD
                     RTAVAVARMLEELGCRYVPPPLLRELT"
     gene            299..625
                     /locus_tag="VE686_13015"
     CDS             299..625
                     /locus_tag="VE686_13015"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY85406.1"
                     /translation="MAMDRDPNIYDRETPVVNRDTTVVDRESGGSNFLAFLIGGLVIA
                     IGLLAFLFYDGGSTGGRDVSTTGSTTTRSAPATPGAGGSMTAPAPSGAGSSTSAPTAP
                     ATPTRP"
     gene            complement(696..1079)
                     /locus_tag="VE686_13020"
     CDS             complement(696..1079)
                     /locus_tag="VE686_13020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012331717.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY85407.1"
                     /translation="MTPSDVPPTWTAKPAEPPPASAAPTSAQLKGDINSGHTGDKNPG
                     FDPALAPLGTDDEAAGRPPSAFRIQLARRYERLERWIGRSRSAASAAHDKRDGVALGF
                     AAFAGGVGVVLVTGIWLARTGLAGP"
     gene            complement(1143..1409)
                     /locus_tag="VE686_13025"
     CDS             complement(1143..1409)
                     /locus_tag="VE686_13025"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY85408.1"
                     /translation="MLRDGKPSFIYEPDELDFEDGDAAREHALAMVQEIVGQDFLNPH
                     DWRAWEVEVRGADGLRLVVPFTEGCGPSLIAQVFRLRPGTLPGA"
     gene            complement(1508..1759)
                     /locus_tag="VE686_13030"
     CDS             complement(1508..1759)
                     /locus_tag="VE686_13030"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY85409.1"
                     /translation="MSFSTPVVVQLPEARDGPRVAEILDSRQGIAAMSRDGLGGYDLK
                     DSLWVSTFDLLTKATLHPTPETIEAAREALVRLARRSAH"
     gene            1912..3090
                     /gene="rnd"
                     /locus_tag="VE686_13035"
     CDS             1912..3090
                     /gene="rnd"
                     /locus_tag="VE686_13035"
                     /EC_number="3.1.13.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012317513.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016891 - RNA endonuclease activity,
                     producing 5'-phosphomonoesters [Evidence IEA];
                     GO_process: GO:0006396 - RNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease D"
                     /protein_id="HYY85410.1"
                     /translation="MELIASTDALAEACARLSAHPFVTVDTEFMRETTYYPKLCLIQM
                     AAPDGEAVLIDPLAEELELGPFMDLMANEAVLKVFHSARQDLEIVWNLGGIVPRPLFD
                     TQVAAMVCGYGDSVSYEQLVNDLAKARVDKSSRFTDWSRRPLSDAQLTYALSDVTHLV
                     KVYEALSADLERTGRAEWLAEEMEVLTSPDTYRADPANAWKRLSGRMRKPKEIAVLME
                     VAAWREREAQDRDVPRSRVLKDEAVIDVATSQPRSVEALGRLRSIPSGFERSRTGAEI
                     LAAVERGLERDPKTVPVPERSRTRGGGAALVELLKVLLKAVAEAERVAPKIIATVDDL
                     EGIAEEGESADVAAMRGWRRRLFGDKAMALKEGRLGLSARDGRVVVQELAAEPAPEQA
                     "
     gene            complement(3101..>3298)
                     /locus_tag="VE686_13040"
     CDS             complement(3101..>3298)
                     /locus_tag="VE686_13040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008974293.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HYY85411.1"
                     /translation="ARLAGQRMGGDVDALLKSRLARIPLGFMGDGRDTAHAALFLASD
                     EARFVTGTELVVDGGMTARCA"
BASE COUNT          505 a         1142 c         1147 g          504 t
ORIGIN      
        1 accctatctc gacctgacga aatggagctc gctggcgacc ggtgccgacc tgccggccgc
       61 cgtggcgccc gtcatgcgct cggcagccgg gctgccggtc ggcgtgcaga tcattgcccg
      121 caagggcgga gaccggaccg cggtggcggt cgcccgtatg cttgaggagc tcggttgccg
      181 ctacgttccg ccgccgctgc tgcgcgagct cacatagaaa gctcaagctt agaagtgaaa
      241 ccctacgcgc agtgaggcgt tgccccctga gtgaagccgt tcagaggagc gtaaaaccat
      301 ggctatggat cgtgatccga acatctacga tcgcgagaca ccggtggtga atcgtgacac
      361 gacggtagtc gaccgcgagt cggggggctc gaacttcctg gcgtttctta tcggcggcct
      421 tgtgattgcc atcggcctgc tcgccttcct cttctatgat ggtggcagca cgggcggtcg
      481 cgacgtgagc accaccggct cgacgacgac gcgtagcgct ccggcaactc cgggggcggg
      541 cgggtcgatg acggccccgg ccccgtcagg cgccggcagc tcgacctcgg ctcccacggc
      601 gccggcgacc ccgacgcgtc cctaaaaggc gcaccagttc gcatcgcgag agggccgggc
      661 gaaagcccgg ccttttcatt gatcgaagcc ggagttcagg ggccggcgag cccggtgcgc
      721 gcaagccaga tccccgtcac gaggacgacg ccgacgcccc ccgcgaaggc ggcaaacccg
      781 agagcgacgc cgtcgcgctt gtcgtgggcc gcgctcgccg cgctccggct gcggccgatc
      841 cagcgctcga ggcgctcgta tctgcgggca agttggatgc ggaacgcgct cggcggccgg
      901 ccggcagcct cgtcgtccgt gccgagcggc gccagcgccg ggtcgaagcc agggttcttg
      961 tcgccagtgt ggccgctgtt gatgtcgccc ttcagctgcg ccgaggtcgg cgcggccgac
     1021 gcgggtggcg gctccgcggg cttcgcagtc caggtcggcg gcacatcgga cggggtcatc
     1081 ggcggctctc gacgatcgac tcggatcaca ggggtcaatc cgcggcggcg ccaacggttg
     1141 cgttaggcgc cgggcagcgt gcctgggcgc aggcggaaca cctgcgcgat cagactcggc
     1201 ccgcagccct ccgtgaatgg cacgaccagg cggagcccgt cggcgcccct cacctcgacc
     1261 tcccacgcgc gccagtcgtg cgggttcagg aagtcctgcc cgacgatctc ttggaccatc
     1321 gcgagggcat gctcgcgcgc ggcgtcgccg tcctcgaaat cgagctcgtc cggctcgtag
     1381 atgaagctag gcttgccgtc ccgcagcacc gtgaacgcaa aactcgatcg ggtcgggaac
     1441 ccatggcgcc cgaccagcga ccggtatcct cgaagtgttc cctcgggcga aaacccgctc
     1501 gagagcgtca gtgcgcgctg cggcgagcga ggcggacgag ggcctcgcgg gccgcttcga
     1561 tggtctcggg ggtcggatgc agggtcgctt ttgtgaggag gtcgaaggtc gacacccaga
     1621 gcgagtcctt gagatcatag ccgccgaggc cgtcccggct catggccgcg atgccctgcc
     1681 tcgagtcgag gatctccgcg acccgtggac cgtctcttgc ctcgggcaat tgcaccacga
     1741 ccggcgtgct aaatgacatt ggccctccga cctcccgttt tgcggaataa cctaagttaa
     1801 tcgccttggt tcccggcccg gcgaaaaaaa gcttgtcaat gatcggcgct ctttgccgcg
     1861 agggggaggc cgccggttcc cctcccctcg accaggcgat atacggctgc catggagctc
     1921 atcgcctcga ccgatgcgct ggccgaggcc tgcgcccgcc tgtccgccca ccccttcgtc
     1981 accgtcgaca ccgagttcat gcgggagacg acgtattatc cgaagctgtg cctgatccag
     2041 atggcggcgc cggacggcga agccgtgctg atcgatccgc ttgccgaaga gctcgagctc
     2101 gggccgttca tggacttgat ggccaacgag gccgtgctca aggtcttcca ctcggcgcgg
     2161 caggatctcg agatcgtctg gaacctcggc gggatcgtgc ctcgcccgct cttcgacacg
     2221 caggtggccg ccatggtgtg cgggtacggc gactcggtgt cgtacgagca gctcgtcaac
     2281 gacctcgcca aggcgcgcgt cgacaagtcc tcgcgcttca ccgactggtc gcgccggccg
     2341 ctgtcggacg cgcagctcac ctatgcgctc tcggacgtga cccacttggt caaggtctac
     2401 gaggcgctga gcgccgacct cgagcgcact ggccgcgcgg agtggctcgc cgaggagatg
     2461 gaggtcctca cctcccccga cacctaccgg gccgacccgg cgaacgcctg gaagcgcctc
     2521 tcgggccgca tgcgcaaacc gaaagagatc gcggtcctca tggaggtcgc ggcttggcgc
     2581 gagcgcgagg cgcaggatcg cgatgtcccg cgctcccgcg tcctcaagga cgaggccgtg
     2641 atcgacgtcg cgacctcgca gccgcgctcc gtcgaggcgc tcgggcgcct gcgctcgatc
     2701 cccagcggct tcgaacggtc gcggaccggg gccgagatcc tcgccgccgt ggagcgaggc
     2761 cttgaacgcg acccgaaaac cgtgccggtt ccggagcgct cgcgcacccg gggcggcggc
     2821 gcggcgcttg tcgagctcct gaaggttctg ctcaaggccg tggcggaagc ggagcgggtc
     2881 gcgcccaaga tcatcgccac cgtcgacgac ctcgagggga tcgccgagga aggcgagagc
     2941 gccgacgtcg ccgccatgcg cggctggcgc cgccgcctgt tcggcgacaa ggcgatggcc
     3001 ctgaaggagg ggcgcctcgg cctatctgcc cgcgacggcc gggtcgtggt gcaggagctt
     3061 gccgccgagc ccgcgcccga gcaggcgtga gcgccgcgcc ttaggcgcag cgcgccgtca
     3121 ttccaccgtc gacgacaagc tcggtgccgg tgacgaagcg cgcctcgtcg gaggcgagga
     3181 acagggccgc atgggccgtg tcgcggccgt cgcccatgaa cccgagcggg atgcgcgcga
     3241 ggcggctctt cagaagagcg tcgacgtcgc cgcccatgcg ctggcctgcg agccgcgc
//
LOCUS       DASQWN010000698         2851 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_582686, whole genome shotgun sequence.
ACCESSION   DASQWN010000698 DASQWN010000000
VERSION     DASQWN010000698.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2851)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2851)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2851
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_582686"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..335)
                     /locus_tag="VE686_13045"
     CDS             complement(<1..335)
                     /locus_tag="VE686_13045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003599507.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alcohol dehydrogenase catalytic
                     domain-containing protein"
                     /protein_id="HYY85412.1"
                     /translation="MGAFRAVVIDKGEGGQTVALRDFDEADLMDGDVTVRVSHSTLNY
                     KDGLALTGKAPVVRRFPMIPGIDFAGTVESSSHPDFKPGDAVVLNGWGTGETYLGAYA
                     EKARVKGEWL"
     gene            complement(403..1632)
                     /locus_tag="VE686_13050"
     CDS             complement(403..1632)
                     /locus_tag="VE686_13050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009764779.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HYY85413.1"
                     /translation="MSVSVPRTRLSPQAVVFAGCAIALISFGPRAAAGLFQVPMTSEY
                     GWGRDVFGLALAIQNLCWGMGQPFAGAIADRFGAVRVFCAGGLLYALGLVLMSYGTTP
                     VLVHLGAGVLVGFGLSGCSGNLVISVFGKLLPESWRPMAFGASTAAGSLGQFLFLPTA
                     SVLIDTVGWHQTLVGFAVIVLVILPLSLALATPRAEAKAATGPAQSIPQALAEAFRHR
                     SYVLLVLGFFTCGFQLAFITVHLPAYLKDGGLSTAVGGWTLAAIGLCNAVGSLGAGWL
                     TGRMSRRWLLAWIYLGRSLAITVFILLPLTPVTAIGFGAAMGFLWLSTVPPTSALVML
                     MFGTRYMAMLFGFAFFSHQVGGFLGVYLGGVLYEMNGSYDLVWWLSVALGLASAAINL
                     PIREERVVREPALASAA"
     gene            complement(1747..2205)
                     /locus_tag="VE686_13055"
     CDS             complement(1747..2205)
                     /locus_tag="VE686_13055"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY85414.1"
                     /translation="MPLRSLVVALAAGVAALASSAALGAPADCVACYRHVVRPPVHAV
                     VTERVAPNPVQAVARTLLPPLPRAKVVTEKVLVAPARNVWQVTRGADGRIVGCWVTVP
                     ARYAVRHRRVLEWPARTAQTASAAIVTRTRSVVLDPGGAAWEPIAARVKR"
     gene            complement(2307..>2851)
                     /locus_tag="VE686_13060"
     CDS             complement(2307..>2851)
                     /locus_tag="VE686_13060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015823184.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="cell wall hydrolase"
                     /protein_id="HYY85415.1"
                     /translation="TPAPADATPIEIAAAPVSVSGRAGMTTVTRAPDQPRYADLINPD
                     HVAREQRCLAEAVYFEARSEPEQGQAAVAQVVLNRVKSGLYPTTICGVVYQNRHRHLA
                     CQFTFACEGKGLRVSDNESWERARRVAREVLEGRTYLADVGGATHYHADYVRPSWSRR
                     LKKMDVIGRHIFYKLKPGQT"
BASE COUNT          488 a          966 c         1047 g          350 t
ORIGIN      
        1 agccactcgc ccttgacccg cgccttctcg gcgtaggcgc cgagataggt ctcgccggtg
       61 ccccagccgt tgagcaccac cgcgtcgccg ggcttgaagt ccgggtgcga cgacgactcg
      121 actgtaccgg cgaagtcgat cccggggatc atcgggaagc gccgcaccac cggggcctta
      181 ccggtcagcg ccaggccgtc cttgtagttc agggtcgagt gcgacacgcg gacggtgacg
      241 tcgccgtcca tgaggtcggc ctcgtcgaaa tccctcagag cgacggtctg gccgccctcg
      301 cccttgtcga tcaccaccgc cctgaacgcg cccatgccgg cctccttctg tgagcgccgt
      361 tgtgccgcgc gggcgtgccc ggcacaagcc gggaggcctg gactacgccg cggatgcgag
      421 ggcgggctcg cgcaccaccc gctcctcgcg gatcggcagg ttgatggcag cggaggcgag
      481 gccgagcgcc acggaaagcc accacacgag gtcgtagctg ccgttcatct cgtagagcac
      541 gccgccgaga tacacgccga ggaagccgcc gacctggtgc gagaagaagg cgaacccgaa
      601 cagcatggcc atgtagcggg tgccgaacat cagcatcacc agggccgagg tcggcggcac
      661 ggtcgagagc cagaggaagc ccatggcggc cccgaagccg atcgccgtga cgggcgtgag
      721 cggcaggagg atgaagaccg tgatggccag cgagcggccg agatagatcc aggcgagcag
      781 ccagcgccgc gacatccggc cggtgagcca gcctgccccc agcgagccga cggcgttgca
      841 caggccgatg gccgcaagcg tccagccgcc gacggccgtc gagaggccgc cgtccttgag
      901 gtaggccggc aggtggacgg tgatgaaggc gagctggaag ccgcaggtga agaacccgag
      961 caccaggagc acgtagctgc ggtgccggaa cgcctccgcc agcgcctgcg gaatggactg
     1021 cgcgggaccg gtggcggcct tggcttcggc gcgcggggtc gccagggcga gcgacagcgg
     1081 caggatgacg agcacgatca ccgcaaagcc gacgagcgtc tggtgccacc cgacagtgtc
     1141 gatgagcacg ctggcggtcg gcaggaacag gaactgcccg agcgagcccg cggccgtgct
     1201 ggccccgaac gccatggggc gccagctctc cggcagaagc ttgccgaaca cgctgatgac
     1261 gagattgccc gagcagcccg agagaccgaa gccgacgagc acgccggcgc cgaggtggac
     1321 cagcacaggc gtggtcccgt acgacatgag caccaggccg agcgcgtaga gcaggccgcc
     1381 cgcgcagaag acacgcacgg cgccgaagcg gtcggcgatg gcgccggcga aaggctggcc
     1441 catcccccag cacaggttct ggatcgcgag cgcgagcccg aagacgtctc ggccccagcc
     1501 gtattccgac gtcatgggga cctggaacag gcccgccgca gcgcgcggcc cgaacgagat
     1561 cagcgcgatg gcgcagccgg cgaacacgac ggcttgcggc gacagccgcg tccggggaac
     1621 tgagacggac atgttgtggg acctgccgag attcccgcgc accttagagc gcgagcgagc
     1681 cccggcaatt cagagtttgt gaccccaggc ataacgggca ggcatggctc agcccgcctc
     1741 aggagcttag cgcttcaccc gcgccgcgat gggctcccag gccgcgccgc ccggatcgag
     1801 gacgaccgat cgggtccgcg tgacgatcgc agccgaggcg gtctgcgcgg tacgtgcggg
     1861 ccactccagc acgcgacggt gccggaccgc gtatcgcgcc ggcaccgtca cccagcagcc
     1921 gacgatcctg ccgtccgcgc cccgggtgac ctgccatacg ttgcgggccg gcgccacgag
     1981 caccttctcg gtcaccacct tggcgcgcgg cagaggtgga agcagggtac gcgcgaccgc
     2041 ctgcacgggg ttcggggcga cgcgctcggt cacgacggca tgcaccggcg gacgcacgac
     2101 gtgcctgtag caggcgacgc agtcggcggg ggcgccaagg gccgcgctcg aggcgagggc
     2161 ggccacgccg gccgcaaggg cgacgacgag gcttcgaagc ggcatgccga actcccggtg
     2221 cgaactcacc gcagagtgac agcgcgacgg ctccgcctcg gcaaggcgaa gcgaacgtta
     2281 aggtaaagcc tgagggacga aggccctcag gtctggccgg gcttgagctt gtagaagatg
     2341 tggcggccga tgacgtccat cttcttcagg cggcgcgacc acgaggggcg aacgtagtcg
     2401 gcgtggtagt gcgtcgcgcc gccgacgtct gcgaggtagg tcctgccctc gagcacttcg
     2461 cgcgcgacgc ggcgggcccg ctcccaggac tcgttgtcgg acacccgcag gcccttgcct
     2521 tcgcacgcga aggtgaactg gcaggcgagg tggcggtggc gattctggta gacgacgccg
     2581 cagatggtgg tcgggtagag gccgctcttg acccggttga ggaccacctg ggcgacggcc
     2641 gcctggccct gctcgggctc gctgcgcgcc tcgaagtaca ccgcctcggc gaggcagcgc
     2701 tgctcgcgcg cgacgtggtc ggggttgatg agatcggcat agcgcggctg gtcgggggcg
     2761 cgtgtcaccg tggtcattcc ggcccgcccc gacaccgaga ccggagcggc cgcgatctca
     2821 atgggcgtgg cgtcggccgg ggccggcgtt g
//
LOCUS       DASQWN010000699         3109 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_194450, whole genome shotgun sequence.
ACCESSION   DASQWN010000699 DASQWN010000000
VERSION     DASQWN010000699.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 3109)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3109)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3109
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_194450"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(174..470)
                     /locus_tag="VE686_13065"
     CDS             complement(174..470)
                     /locus_tag="VE686_13065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009489518.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY85416.1"
                     /translation="MLTISDIEQTCEAQGITLVVHPVIRQALGGYEESFYIGAACFLR
                     GESDGLFFLPLDRSYVQLRFVKRRSAGGHPILRLDTTSPKAMAAIKRAVEEQRL"
     gene            complement(567..1304)
                     /locus_tag="VE686_13070"
     CDS             complement(567..1304)
                     /locus_tag="VE686_13070"
                     /EC_number="2.8.3.-"
                     /inference="COORDINATES: protein motif:HMM:NF013323.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008410 - CoA-transferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CoA-transferase"
                     /protein_id="HYY85417.1"
                     /translation="MDEAAAARARRLHMIAAILDLLEGPGHIAVGSSSPIPATAALLA
                     RHRNPGGVRVSLLGSETNNVFTDGNRELFDCAAQGRVGTFFFSGGQIDGAGRINLVGI
                     GAYPRMKVRFPGSFGSAFLYPLVPRVILFREDHTSRTLVDKLDFISAAPGEGRPGDRN
                     DGPRALVTGRCVFVFDPTRRRFRLVRLFPGETLESVAANTGFAFDGGEGDLERPLPAA
                     LEREIADVVATEVVRDYPGFARAFAGA"
     gene            complement(1307..2092)
                     /locus_tag="VE686_13075"
     CDS             complement(1307..2092)
                     /locus_tag="VE686_13075"
                     /EC_number="2.8.3.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008966402.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008410 - CoA-transferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CoA-transferase"
                     /protein_id="HYY85418.1"
                     /translation="MLVDSLDDLVARIPDGASVALPPDYSGCAMAAVQALIARRVRGL
                     HLIGVPSLGFQGDMLIGAGCAASLEAAAVGLGEYGPAPQFDAALKAGRISMKDATCPA
                     IHAGLQAAERGVGSMPIAGIIGSDLVEARREDWRVVDDPFTGRPTVHVRAITPDIALF
                     HAALADRDGNVWIGVRRELMTMAHAARRTLVTVERIVDESLLADDRTAAGTIPSLYLD
                     AICLAPLGARPLGLRGCYGPDEAALRAYVARARQAVTALRQEA"
     gene            2211..2600
                     /locus_tag="VE686_13080"
     CDS             2211..2600
                     /locus_tag="VE686_13080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009494724.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3775 domain-containing protein"
                     /protein_id="HYY85419.1"
                     /translation="MDIALDKVCELILRARAIDVKEGITDPDSGSNPIDDGNLDSLTS
                     SPDDATEEEVREFIAGLNEDERHDLIALVYIGRGDMEPEEWGAATRLAREREDAASLP
                     TADWLIGIPNLADLLDEGLALMGRSCT"
     gene            complement(2628..>3109)
                     /locus_tag="VE686_13085"
     CDS             complement(2628..>3109)
                     /locus_tag="VE686_13085"
                     /inference="COORDINATES: protein motif:HMM:NF016060.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="GtrA family protein"
                     /protein_id="HYY85420.1"
                     /translation="PSRRLRTAMMFYRAVRSMPRLEQLASYGAVSAVALGIDVATLVG
                     LKELAGINYVVASAAGMLTGTLVHYTLAKVFVFGEGRLKAKGAEFLAYAVLGGIAMGA
                     SVVAIVALTEWGGLDYRVSKALSVVLSFFVGYALRKSLLFRTGLKVAPAPTLSAASA"
BASE COUNT          526 a         1076 c         1077 g          430 t
ORIGIN      
        1 tgtcgatgcg gcctccgaag ttgttgcagc cgaggccgac gacggagacc cgaaggcccg
       61 attttcccag gttccgttcc tgcatccgac gctcccgtgt cgcggcccaa acggcgcggc
      121 ggcgcaatct aggcagcgcg cgcgaggtct gtcgaccgga ccggccgctc gccttagagg
      181 cgctgttcct cgacggcgcg cttgatggcc gccatcgcct tgggcgaggt cgtgtcaagg
      241 cgcaggatcg ggtgccctcc cgcagagcgg cgtttcacga agcgtagctg aacatagctg
      301 cggtcgaggg gcaggaagaa caggccgtcg gactcgcccc gcaggaagca ggccgcgccg
      361 atgtagaagc tctcctcgta gccgccgagc gcctgccgga tcaccggatg caccacgagc
      421 gtgatgcctt gcgcctcgca ggtttgctcg atgtccgaaa tggtcagcac ggccgcgtct
      481 accccgttga ggcgccctga gcgggcaaat gggtcaatgc gcgtgaggtg aaaagagttc
      541 gacgcagcga tgccgcgggt ttgcgttcag gcgcccgcga aagcgcgcgc gaagccggga
      601 tagtcacgta cgacctcggt cgcgaccacg tcggcgatct cgcgctcgag cgccgccggg
      661 agcgggcgct ccaggtctcc ctcgcctccg tcaaacgcaa agccggtgtt cgccgcgacc
      721 gattcgaggg tctcaccggg aaagagccgc accagccgga acctgcggcg cgtcggatcg
      781 aagacaaaga cgcagcggcc ggtgaccagc gcccgggggc cgtcgttgcg gtcgcccggc
      841 ctgccctcgc ccggcgccgc gctgatgaaa tcgagcttgt cgaccagcgt tcgcgacgtg
      901 tggtcctccc ggaacaggat gacgcggggc accaggggat acaggaacgc cgacccgaag
      961 ctgccgggga agcgcacctt catgcgcggg tatgccccga tgccgacgag gttgatgcgc
     1021 cccgccccat cgatctggcc gcccgagaag aagaaggtgc cgacgcggcc ctgggcggcg
     1081 cagtcgaaga gctctcggtt cccgtccgtg aacacgttgt tggtctcgct accgagcagc
     1141 gacacccgca cccctcccgg attgcggtgg cgggcgagga gcgccgccgt ggccgggatc
     1201 ggcgacgacg agccgacggc gatgtgcccc ggcccctcga ggaggtcgag gatcgccgcg
     1261 atcatatgga ggcgccgcgc ccgcgcggcc gcggcctcgt ccacggtcac gcctcctgcc
     1321 tcagggccgt cacggcttgg cgcgcccggg ctacataggc ccggagggcc gcctcgtccg
     1381 ggccgtagca gccgcgcaat ccgaggggcc gcgcgccgag gggcgccagg cagatcgcgt
     1441 caagatagag cgacggaatg gtccccgccg ccgtgcggtc gtcggcgaga aggctctcgt
     1501 cgacgatgcg ctccaccgtg acgagggtgc ggcgggccgc gtgggccatg gtcatgagct
     1561 cgcgcctcac gccgatccac acgttgccgt cgcggtcggc gagggccgcg tggaacaggg
     1621 cgatgtcggg agtgatagct cgcacgtgga ccgtcggccg gccggtgaac gggtcatcga
     1681 cgacgcgcca gtcctcgcgg cgcgcctcga cgagatccga gccgatgatg ccggcgatcg
     1741 gcatcgagcc gacgccccgc tcggcggcct gaaggcccgc gtgaatcgcc gggcaggtcg
     1801 cgtccttcat ggaaatgcgc ccggccttca gcgccgcgtc gaactgcggc gccgggccgt
     1861 actcgccgag ccccaccgcc gccgcctcca ggctagcggc gcagccggca ccgatgagca
     1921 tgtcgccctg gaagccgagg ctcggcaccc cgatgaggtg caggccgcgc acgcgccgcg
     1981 cgatcagcgc ctggacggcc gccatggcgc agcccgaata gtcgggcggc aacgcgacgg
     2041 aggccccgtc cggaatgcgg gcgacaaggt cgtcgaggct gtccacgagc atgggacact
     2101 cccttcattc catgaagcgc caccatggtg ggcaggagcc cccgcggcaa gcggtcgaac
     2161 ctctgcggcg ctcgcgcatt tcctgatgcg tagcagccga ggagacttca atggacatcg
     2221 cgctcgacaa ggtctgcgag ctgatcctgc gggcacgcgc catcgacgtg aaggaaggga
     2281 tcactgaccc cgattcgggc tcgaacccca tcgacgacgg caacctcgac agtctcacct
     2341 cgtcgcccga cgacgccacc gaggaggaag tgcgcgagtt catcgccggg ctcaacgaag
     2401 acgagcggca cgaccttatc gccctcgtat acatcggccg gggcgacatg gagcccgagg
     2461 aatggggcgc cgccacccgg ctcgcccggg agcgcgagga cgccgcaagc ctgcccaccg
     2521 ccgactggct catcggcatc cccaacctcg ccgacctcct cgacgagggt ctcgccttga
     2581 tgggccggag ctgcacctag tcgcgtggcc ggcgcctcga gctagcgcta agccgaggcg
     2641 gcgctgagcg tcggcgcggg tgcgaccttg agcccggtcc tgaagaggag cgacttgcgc
     2701 aaggcgtagc cgacaaagaa tgacagcacg accgacaacg ccttggatac gcggtagtcc
     2761 agccctcccc actccgtcag cgcgacaatg gccaccacgc tagcccccat ggcgattccg
     2821 cccaggaccg cataggccag gaattcggcc cccttcgcct tgagccgtcc ttcgccaaag
     2881 acgaaaactt tggcgagggt gtaatggacg agtgtcccgg tcagcatccc ggcggccgag
     2941 gcgaccacat agttgatccc tgcgagctcc ttgaggccaa cgagcgtagc gacgtcgatt
     3001 ccgagggcca ccgcgcttac ggcgccgtag gaggcgagtt gctcgaggcg aggcatgctg
     3061 cggacggcac ggtaaaacat catcgcagtt cgcagccttc ggctagggt
//
LOCUS       DASQWN010000700         2169 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_194907, whole genome shotgun sequence.
ACCESSION   DASQWN010000700 DASQWN010000000
VERSION     DASQWN010000700.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2169)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2169)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2169
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_194907"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            124..774
                     /locus_tag="VE686_13090"
     CDS             124..774
                     /locus_tag="VE686_13090"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HYY85421.1"
                     /translation="MRIVLVEDDDRVREMAVAALRDAGFEVTQAAAREAPTDDAPPVD
                     VRLPDLFDGVVNRERNLEPEPAETHLQLEAADPIRVLLVENNEPLREPIAEGLRQAGL
                     EVVEAADGQEAMSHLGEHFDVLFTDIDLPGGMDGWTIAERWREADAAVGVIYTSGFCM
                     EHGRQVRGSRCVPKPHRPGQIVAAVVDLANERTLRRPAPDPSGADAARDAGIVSRR"
     gene            1042..1347
                     /locus_tag="VE686_13095"
     CDS             1042..1347
                     /locus_tag="VE686_13095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015932440.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY85422.1"
                     /translation="MIPRVFKLAAVLACVPELTLAQPRPSTLAMSCQQARALVASRGA
                     IVLSTGRYTYDRFVAHVGFCEIEQTTEPAFEPTADHPQCPIGNRCRSRPPRDNFFRW"
     gene            1459..>2169
                     /locus_tag="VE686_13100"
     CDS             1459..>2169
                     /locus_tag="VE686_13100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012043000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1028 domain-containing protein"
                     /protein_id="HYY85423.1"
                     /translation="MTWSIVARDEASGAMGVAVSTKFFAVGARVPAIEVGAGAMASQA
                     LTNPLHRRRGLALLREGVPAQDVIRLLGEPDAGREHRQIHIMDREGRLAAHTGAECVP
                     WCGHLIRDTFSVAGNMLAGPEVIADTARAYEAQAALPFPRRLIAALKAGEAAGGDKRG
                     KQAAALLIYSTEEYSDLDLRVDDHTDPLAELERLEGVSRERWTHFRRFLPNRNDPSGV
                     FDRDVINTEIEKALAAERE"
BASE COUNT          330 a          788 c          742 g          309 t
ORIGIN      
        1 aagcgcattg tcgccaatgc gccgcggcgc cgttaacccg acctgccgag actcgcggcg
       61 cgtcggaacg cccgcatgaa gccgcggttc gctccacgcc tgtgcgtcgc gggagctgct
      121 ccgatgagga ttgttctggt cgaagacgac gaccgggtgc gcgagatggc cgtcgccgcg
      181 ttacgcgacg caggcttcga agtcacccag gcggcagcgc gagaggcgcc gacggacgat
      241 gcccctccgg tcgacgtccg cctgcccgac ctgttcgacg gagtggtgaa ccgcgagcgg
      301 aacctcgaac cggagccggc cgaaacccac ctgcagctcg aggcagcgga ccccatccgc
      361 gtccttctgg tcgaaaacaa cgagcccctt cgggagccga tcgcggaggg tcttcgccag
      421 gccgggctcg aggtggtcga agccgcggac ggccaggagg cgatgagcca cctcggcgag
      481 catttcgacg tcctcttcac cgacatcgac ctgcccggag ggatggacgg ctggaccatc
      541 gccgagcgct ggcgagaggc cgacgcggcc gttggcgtga tctatacgtc ggggttctgc
      601 atggaacacg gccggcaagt cagggggagc cgctgcgtcc cgaagcccca ccgcccaggg
      661 cagatcgtgg ccgcggtggt ggatctcgcg aacgagcgca ccctccggcg ccccgccccg
      721 gacccgagcg gtgccgatgc agcccgcgac gccggcatcg tctcgcggcg atgatccccg
      781 gcttcgcatt ccggccgccg cggcggccgc aatggcggtt ctggcgtggg gtcgtgctcg
      841 gcttcctctc gggatgcgtc gtcagctatg ccgtctttcg cgatactccg caggcacggg
      901 tgcaccatat cgaggccgca ccggaatacg tggtcgcctc ttcccacgcc tgagccggga
      961 ccgccgcgca ccgggacgca cccggatcaa agcgtgctat ccaagcgttg tcgggtccgt
     1021 cctcgaaggt aggaggtcgc gatgattccc cgggtgttca aactggcggc ggtgctcgcc
     1081 tgcgtccccg agctgacgct cgcgcagccg cgtccgtcga cgctggccat gtcgtgccag
     1141 caagcgcgcg cgctcgtggc gtcccgcggc gccatcgtgc tgagcacggg gcgttacacc
     1201 tacgaccgct tcgtcgcgca cgtcgggttc tgcgagatcg agcagacgac cgagccggcc
     1261 ttcgagccga ccgccgatca cccgcaatgc cccatcggca accggtgccg ctctcgcccg
     1321 ccgagggaca atttcttccg ctggtaagcc ccggcttgcc ggccccctcg cccaaacaaa
     1381 acgcttgcca gccgcgaacg gtggcctgca tttgggcgat gccatcctcg cctgcctggc
     1441 gaggcacgga aggagccgat gacctggtcg atcgtcgcgc gggatgaggc cagcggcgcg
     1501 atgggcgtcg cggtctcgac gaagttcttt gccgtcggcg cgcgtgtgcc ggcgatcgag
     1561 gtcggggcgg gcgcgatggc aagccaggcc ctgacgaacc ccctccatcg ccgccgcggc
     1621 ctcgcgctcc tgcgcgaggg cgtccccgcg caggacgtga tccgcctcct cggcgagccc
     1681 gacgcggggc gggagcatcg gcagatccac atcatggacc gcgagggccg gctcgccgcg
     1741 cataccgggg cggagtgcgt gccctggtgc gggcacctga tccgcgacac cttctcggtc
     1801 gccggcaaca tgctcgccgg gccggaggtc atcgccgaca cggcccgcgc atatgaagca
     1861 caagccgccc tgcccttccc gcgccggctc atcgcggcgc tcaaggccgg cgaagcggcg
     1921 ggcggcgaca agcgcggcaa gcaggctgcc gccctcctca tctactccac cgaggaatac
     1981 tcggacctcg acctgcgcgt cgacgaccac accgacccgc tcgccgagct cgagcgcctc
     2041 gagggcgtga gccgggagcg ctggacgcac ttccgccgct tcctgccgaa ccgcaacgac
     2101 ccttccggcg tgttcgaccg ggacgtcatc aacaccgaga tcgagaaggc actcgcggcc
     2161 gagcgggag
//
LOCUS       DASQWN010000701         2685 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_382435, whole genome shotgun sequence.
ACCESSION   DASQWN010000701 DASQWN010000000
VERSION     DASQWN010000701.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2685)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2685)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2685
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_382435"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..192)
                     /locus_tag="VE686_13105"
     CDS             complement(<1..192)
                     /locus_tag="VE686_13105"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY85424.1"
                     /translation="MAQGKNTYRILLEVPTEWLPELAAAAEEEQRSRHKVMLRFVRQG
                     LDLRSAAKEAAATVRNDSPV"
     gene            complement(1034..1354)
                     /locus_tag="VE686_13110"
     CDS             complement(1034..1354)
                     /locus_tag="VE686_13110"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY85425.1"
                     /translation="MRSSIGGVTGDGFDMHRPVWVKLSLVFPRRPDAPMPTQLPDPRA
                     VDATAEVPGDLLAWLRTRGGEWLGLVTYQLPFADERHQRIYLERQLLPAYALRPRKYG
                     AYRQ"
     gene            1553..1999
                     /locus_tag="VE686_13115"
     CDS             1553..1999
                     /locus_tag="VE686_13115"
                     /inference="COORDINATES: protein motif:HMM:NF025683.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4383 domain-containing protein"
                     /protein_id="HYY85426.1"
                     /translation="MTRSDPTLRARRPVQLAAMIVGAVFLLVGIAGFIPGITTNYDQL
                     QFAGHHSDALLLGVFQVSILHNIVHLLFGIAGLAMARTATGARNYLIGGGVIYAVLWL
                     YGLLIADTTPANFVPMNIADDWLHFVLAVGMVGLGVLLGRDRRALR"
     gene            complement(2162..2293)
                     /locus_tag="VE686_13120"
     CDS             complement(2162..2293)
                     /locus_tag="VE686_13120"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY85427.1"
                     /translation="MTRLLVSWTLLVAASLGMGRSWYLWRRNHISEKSMVGLTLLLS"
     gene            complement(2290..2511)
                     /locus_tag="VE686_13125"
     CDS             complement(2290..2511)
                     /locus_tag="VE686_13125"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY85428.1"
                     /translation="MAKLEAEERDRCGASPPRPSPPASPNVRSGLAEQQGELIAQVIR
                     SILGDLGLNKKQQDEAPAIVRRHLLALAG"
BASE COUNT          444 a          893 c          859 g          489 t
ORIGIN      
        1 cacggggctg tcgttgcgaa ccgtcgcggc ggcctctttt gcagcggagc gcagatcaag
       61 gccctgacgg acgaacctca gcatcacctt gtgacggctg cgctgttcct cttccgccgc
      121 cgcggcaagc tccggcagcc actccgtcgg cacctcgaga aggatgcggt acgtgttctt
      181 cccctgcgcc atatgtgagt catgctaatc gcatatgggt tcgctatgtg cgcattccgg
      241 cagaatgagc cgatcgacct actgtcgtcg attggcgatc atccggtcac cgtcacgtcg
      301 ctgcagcgct ggcccactcc gcctggatga tcggaacaaa tcacatgcat cgaattccat
      361 gcgcgtcatt ctgcgtcgcc tggggaacca cccgcttgtc ggtacgcggg aacgtatgta
      421 ccccattacc gtcgggcccg tcgtcgctcc ccgtgctgac caaggggagt ggcattggcg
      481 aagcgcaagc gcccaggccg acgccgcaag tcgaacgacc tcatgattct gctgatcatc
      541 ggcgtcgttg gctatgcagt ctccgccccg aagctcgggg tcatctttgt cgtctgcgct
      601 tggatctttg tcttcatgat ctggatgatg ttcctcatga acacctactg cgattacgac
      661 gtggggggtc gtggttgcag tcgaccggtc tacggcaaga tccggggctg ctggcagcac
      721 gcgaggctca agagggacgc tgtctgggct gcattcggtc ggcacaaccc agggacgttg
      781 actcgcctga cctggtccaa caggaccccc gaacctgggc gacgagtcgg ggatcgagcc
      841 ggcgggcctc cagcgctgca agacaaactg tcaggagccg ctgggccgca gccgtcggaa
      901 gctgccgccc aacagggctt ctacggccta tcgatgtggg tcctaaccgc agtcagcgcc
      961 gtggcggcag tagtcacgtt gttcttgccg aagtagccac cgcctgagag acagcagggc
     1021 cggtgcggat acttcactgc cgatacgccc catacttccg cggccgcagg gcgtacgccg
     1081 ggagcagctg gcgctccagg tagatgcgct ggtgccgttc gtcggcgaag ggcaactggt
     1141 acgtcacgag tcccagccac tcaccgcccc tggtgcgaag ccaggccagg aggtcgccgg
     1201 ggacttcggc agtggcgtcg acggcacgtg gatcaggcag ctgcgttggc atcggtgcat
     1261 ccggccgccg agggaagacc agcgagagct tgacccagac cggccgatgc atgtcgaagc
     1321 cgtcaccggt gacaccgccg atgctcgaac gcacgttcga agagtacggc gctgcggcac
     1381 ctgatgttcc gccacgtcat gacatgcacc gccactgcga agacgtgtgc ccgccatggt
     1441 cgcagcgcgg tgtcgccccc gtcacggttg ggtcgcggat cgctttaggt caccatcgcc
     1501 gggtatcgct gcagcgcaag tctctcccag ctagtggaag tggatgacag cgatgacccg
     1561 ctccgatccc accctccgcg cccgacggcc ggtgcaactc gccgccatga tcgtcggtgc
     1621 ggtcttcctg ctcgtcggca ttgccgggtt catcccgggg atcacgacga actacgacca
     1681 gctgcagttc gctggacacc actccgacgc cctactgctg ggcgtcttcc aggtctcgat
     1741 cctgcataac atcgtgcacc tgctcttcgg tatcgccggc ctcgccatgg cgcgcaccgc
     1801 aaccggggca cgcaactacc tgatcggcgg cggcgtgatc tacgccgtgc tgtggctgta
     1861 cggcctgctc atcgccgaca ccacgccagc caacttcgtg ccgatgaaca tcgccgacga
     1921 ctggctgcac ttcgtcctgg cggtcggcat ggtcggcctc ggggtgctgc tcgggcggga
     1981 ccggcgcgcc ctgcgctaat ccggtccccc cgcggtagcg gtggtgtgag gcggcccggg
     2041 cgcgcccggg ccgcctcacg tctcttgtaa gcacgactac gggtgggccg ctaggagcgc
     2101 tttcagttcg gcccgctcag ctgacgaaga tcgtggtcac tgccgagtag acgagcgcca
     2161 gtcagctcag cagaagcgtc agaccgacca tcgacttctc gctgatgtgg ttgcgccgcc
     2221 acaggtacca agaccggccc atcccgagcg acgccgctac gagcagcgtc cacgagacga
     2281 ggagacgggt catccggcca gcgccaacag gtggcgacgg acgatggccg gagcctcgtc
     2341 ctgttgcttc ttgttcaggc cgaggtcgcc gaggatcgag cgaatgacct gggcgatgag
     2401 ctcgccctgc tgctcggcca atcctgacct gacgttcggc gatgccggcg gcgatggcct
     2461 tggtggcgaa gctccgcaac gatcacgttc ctcggcttcg agcttggcca agccccggac
     2521 gtactcaccg gccttgtagg tatcgtgctc cgtgagatcc acacctcggc caccagcgct
     2581 tcccgcagac tcggggagtc cgctaccagc gtttcgagtt cggcggcgta ccgctgggct
     2641 cgagcagctg actggctgac caggcggagc aaggtgtcgc cgggg
//
LOCUS       DASQWN010000702         2524 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_587717, whole genome shotgun sequence.
ACCESSION   DASQWN010000702 DASQWN010000000
VERSION     DASQWN010000702.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2524)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2524)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2524
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_587717"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            690..1178
                     /locus_tag="VE686_13130"
     CDS             690..1178
                     /locus_tag="VE686_13130"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY85429.1"
                     /translation="MPASTRRPHDEPRETFSLKFPPEAAEDYARMRAEDPYWPAEAPR
                     APDFLALDYPFDVPPRQMKFATFAMTNAGAWRKCPQRACRRSRTCRGGEGPPCFRADR
                     TPLHHVMLLTFLAAYQMLSAEEIEHALTVNDNPYTVMKELRARTPAERRPAPRQRRRR
                     RS"
     gene            1234..2310
                     /locus_tag="VE686_13135"
     CDS             1234..2310
                     /locus_tag="VE686_13135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012385940.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="low specificity L-threonine aldolase"
                     /protein_id="HYY85430.1"
                     /translation="MNFGSDNVWGASAPVLEALVRANAGAQAAYGEDEGTKRVERRFA
                     EIFERDVAVFLGGTGTGVNALAVAAVVPPWGSVVCHREAHIIDDECGAPEFFTHGAKL
                     YGLPGVGAKLQPEEVAAYVDGLPKAVKQMPPKLLSLSQVSECGLVHTRDEIAALSAVC
                     RERGMALHMDGARFANALVRLGCTPAEMTWKAGVDILTFGATKNGCLAAEAIVVFDKA
                     LAETLAYRRKRGGHLFSKGRLVSAQFEGYFANDHWLANARHANAMAARLAEGLEGVPG
                     VRLAWACEANEVFPILPRAVDEALQGAGFLYRAWSDLSLPEGERIGAGERLVRLVTSW
                     ATEEGTVERFLATARDAAQQRAAE"
BASE COUNT          373 a          928 c          879 g          344 t
ORIGIN      
        1 acactcgcag gggtccctcg actgatcgat gagcacgctc gatcactttt tgttcttgac
       61 aagagtcctt ccttatgctt gtttgtcgcc gtcccgcccg gcagaggggc acctccggag
      121 gtgtctggtc gtggggcggc atcgcgcgag aagggtttgg gctcaaaagg cccgaagccg
      181 agacgggcgg tggcttggga agcgaggagc cggaaggcga ggagctcctt cgggttgatg
      241 cggcgctgag cccgggacga cacagcccgg gagcactcag ggtcccccgc ctccccgtca
      301 ccggcgcgtt ccaggcgcac cggccggcct tggcggaggc ctcgtccgtc ccatcctcag
      361 gaagggtggg tccgcgcgga gacgcgctta aggctctctc agagggccga agcgcgaggc
      421 cagggatcaa ggcgccgccg agcgcggggt gtccgggacc ggtttccgtt cagcggcaac
      481 ctggccctgg cctggcctgc cgccgtctcg cggctttaca acaccgcaag acggcaccct
      541 ggccgcccgc ggcttacccc gcaggcggaa ccctgcgccg cggacccgtc ccggcgcacc
      601 ccgcgctcgc ccctctcttc tttttcgagg gtcgcgccag accgaccctc atgcctcgga
      661 cccgatcagg gccgcgagaa ggagaagtca tgcccgcaag cacgcgcagg ccccacgacg
      721 agcctaggga aaccttcagc ctcaagttcc cgcccgaggc ggccgaggat tatgcccgca
      781 tgcgggccga ggatccgtac tggcccgccg aggctccgcg ggcgcccgac ttcctcgccc
      841 tcgactaccc gttcgacgtg ccgccgcggc agatgaagtt cgccaccttc gcgatgacga
      901 acgccggcgc ctggcgcaag tgcccgcagc gcgcctgccg gcgcagccgc acctgccgcg
      961 gcggcgaagg gccgccgtgc tttcgcgccg accgcacgcc cctgcaccac gtcatgctgc
     1021 tcaccttcct cgccgcctac cagatgctct cggcggagga gatcgagcac gcgctgaccg
     1081 tcaacgacaa tccctacacg gtcatgaagg agctgcgcgc caggacgcct gccgagaggc
     1141 gccctgcgcc gaggcagcgc cgacgccggc gctcttgaca gcctcgcgcc gatgacgacc
     1201 gtgcgcccct cgaaaaccgg gagcgcacga gcgatgaact tcggcagcga caacgtctgg
     1261 ggcgcgagcg cgccggtgct cgaggcgctg gtgcgggcga acgccggcgc gcaagccgcc
     1321 tacggcgagg acgagggcac caagcgcgtc gagcggcgct tcgccgagat cttcgagcgc
     1381 gacgtcgcgg tgttcctcgg cggcaccggc acgggcgtca acgcgctcgc ggtcgcggcc
     1441 gtggtgccgc cctggggctc ggtcgtgtgc caccgcgagg cgcacatcat cgacgacgag
     1501 tgcggcgcgc ccgagttctt cacccacggc gccaagctct acggcctgcc gggcgtcggc
     1561 gcgaagcttc agccggagga ggtcgcggcc tacgtcgacg gcctgcccaa ggccgtgaag
     1621 cagatgccgc caaagctcct gtccctgtcg caggtgagcg aatgcggcct cgtgcacacg
     1681 cgggacgaga tcgcggcgct ctcggccgtc tgccgggagc gcggcatggc gctccacatg
     1741 gacggcgccc gcttcgccaa cgccctcgtg cggctcggct gcacgccggc cgagatgacc
     1801 tggaaggcgg gcgtcgacat cctcaccttc ggcgccacca agaacggctg cctcgccgcc
     1861 gaagccatcg tggtgttcga caaggcgctc gccgagacgc tggcctaccg gcgcaagcgc
     1921 ggcgggcacc tgttctccaa ggggcggctc gtctcggcgc agttcgaggg ctacttcgcc
     1981 aacgaccact ggctcgccaa cgcccgccac gccaacgcca tggcggcgcg gcttgcagaa
     2041 gggctcgagg gcgttccggg cgtgcggctc gcgtgggcct gcgaggcgaa cgaggtcttc
     2101 cccatcctgc cccgcgccgt cgacgaggcg ctgcagggcg cgggcttcct ctaccgcgcc
     2161 tggagcgacc tcagcctgcc cgagggcgag cgcatcggcg cgggcgagcg cctggtgcgg
     2221 ctggtcacct cctgggcgac cgaggaaggg acggtcgagc gcttcctcgc cacggcgcgc
     2281 gacgccgcgc agcagcgggc cgccgaatga agcgcgtccg tgccgcagcg tcgccgcaat
     2341 cggccccgat ggtcccggac accgatgcac aagaggagtg cggggatgaa ccccgacgtg
     2401 ttgtccgcca agaatagccg catcgccctc gcggctctcg cgatggtgtc ctgcgtggcg
     2461 ctcagcgcgc ccgcggccgc gcaatggggc gcacgctaca acgtccccgg ccccgaggtc
     2521 gtcg
//
LOCUS       DASQWN010000703         2056 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_195844, whole genome shotgun sequence.
ACCESSION   DASQWN010000703 DASQWN010000000
VERSION     DASQWN010000703.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2056)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2056)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2056
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_195844"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..195)
                     /locus_tag="VE686_13140"
     CDS             complement(<1..195)
                     /locus_tag="VE686_13140"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY85431.1"
                     /translation="MQRLLNLHPGRSVWVPSTLEYVLIGPWRNRPEIASIEDLVAVRH
                     FEELLRAAVERCADLGDELML"
     gene            complement(313..1971)
                     /locus_tag="VE686_13145"
     CDS             complement(313..1971)
                     /locus_tag="VE686_13145"
                     /inference="COORDINATES: protein motif:HMM:NF012706.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptide ABC transporter substrate-binding
                     protein"
                     /protein_id="HYY85432.1"
                     /translation="MTPRPFRMFLPLVAIIVLGSLTPLIASAATTPVAGGVVVIEAED
                     QPRESNPTGRQELRLAGTINDPAPLDPAVARDVNSAFLTRQVFRGLTRFDENLEPVPE
                     LAQRIEISPDGVTYRIQLRDNARFADGSPITAQDVVFSLTRALSPQTAADAGAALAGP
                     SYLGDIVGANEVIRGEASELAGLRVVDDRTVEIDLKGPRATFLMKLASAPAAIVDPDD
                     VARGGEWWRDPNASGPYVVDVWEPGDELQLSASEFYVGGEPDLRRVTFRLGPDAANPF
                     NLYQADEIDIAGVPIQAIDRVSDEESPLRQELDVSPVLSTTYIAFRTDVAPMDDPEIR
                     RAVQLAFPRWKVAEILLGGRQVTANGLIPPGTLSRDWPHTAPAQDVEAARAAIANSSY
                     GSAENVPPITIYGASPFGSEALRDVLQRELGLTVEVLDVHWPQFNQGLSKKMFPAYEL
                     TWVADFPDPETFLWNLFASGSPDNYSEYVNPTFDALLDQAAATLAVDERAALYAKAES
                     VLLGDNVVIPLSHDVRYTLMKPWVKGLDITPLGMLYLENAWLER"
BASE COUNT          376 a          639 c          688 g          353 t
ORIGIN      
        1 cagcatcagt tcgtcaccca agtcggcgca gcgctcgacc gcggcccgaa gcagttcctc
       61 gaaatggcgg acggcaacca ggtcctcaat gctggcgatc tcgggccggt ttcgccatgg
      121 tccaatgagg acgtattcga gcgtcgacgg tacccaaacc gatcgaccag gatggaggtt
      181 gagcaaccgc tgcaccgact cggtgctccg tctcccaggg aggcgtaagg cagcgacgtc
      241 tcccgatgtg agcgtgcgca caactgagga tgagccccga gagccgcgcg gcggcgccag
      301 caacccagcc atttaccgct ccagccacgc attctcaaga tagagcatac cgagcggcgt
      361 gatgtcgagg cccttcaccc acggcttcat gagggtgtag cgcacatcgt gcgagagcgg
      421 gatcaccacg ttgtcgccga ggaggaccga ttccgccttg gcgtagagag cagcgcgctc
      481 gtcgacggcc aatgttgccg cggcctggtc gagcagcgcg tcgaaggtcg ggttgacgta
      541 ctccgagtag ttgtccggcg agccagaggc gaacaggttc cagagaaagg tttccggatc
      601 cggaaaatca gcgacccacg tcagctcgta agctgggaac attttcttgg acaacccctg
      661 attgaactgc ggccagtgga cgtcgagtac ttcgacggtt agtccgagct cacgttgcaa
      721 gacgtctcgc agggcctcgg agccaaacgg gctggcgcca tagatagtga tcggcggcac
      781 gttctcggca ctgccataag aggaattggc gatggccgcc cgtgccgcct cgacgtcttg
      841 tgcgggcgct gtgtgcggcc agtcccgact gagggtgccg ggaggaatca gtccgttcgc
      901 cgtcacctgg cgcccaccga gcaggatctc ggcgaccttc cagcggggga acgccagctg
      961 cacggcccgc cgaatttccg ggtcgtccat aggggcaacg tcggtacgga atgcgatgta
     1021 cgttgtggac aggacgggcg atacgtcgag ctcctgccgg agtggactct cttcgtcaga
     1081 gacgcgatcg atcgcttgaa tcggcacgcc ggcgatgtcg atctcgtcgg cttggtagag
     1141 gttgaatggg ttagccgcgt ccggcccaag gcggaaggtg acccgccgca ggtccggctc
     1201 tccccccaca taaaactcgc tagcagagag ctgcagctcg tcaccaggct cccagacatc
     1261 aactacgtac gggccggatg cattcgggtc tcgccaccat tcgccaccac gcgcgacgtc
     1321 atcggggtcg acgattgcgg ccggcgccga ggcgagcttc atgagaaacg tcgcgcgcgg
     1381 ccccttgagg tcgatctcaa ctgtacggtc gtcgaccact cgcagtcccg ccagctcgct
     1441 cgcttcgccc cgaatcacct cgttggcgcc gacgatatcg cctaggtagg agggaccggc
     1501 gagcgcggcg cccgcgtccg ccgccgtttg cgggctcagc gcccgcgtca gcgagaacac
     1561 gacgtcctgc gccgtgatcg gggagccgtc ggcgaaccgt gcgttgtcgc gaagctgaat
     1621 acggtaggtg acaccatcgg ggctgatttc gatccgctgc gcgagttcgg gtacgggttc
     1681 gaggttctcg tcgaaccggg tcagcccgcg gaagacctgg cgggtcaaga acgccgagtt
     1741 gacatccctg gcgaccgcgg gatcgagcgg cgccggatcg ttgatcgtgc cggcgagtcg
     1801 tagctcctgg cggccggttg ggttcgattc cctgggctgg tcttcggctt cgatgacgac
     1861 cacgccaccc gcgaccggtg tcgtggcagc ggaagcaatc agcggtgtga gcgagccgag
     1921 aacgatgatc gcgaccagcg gcaggaacat gcggaaagga cgcggggtca tcgcgggtct
     1981 cctgttcatg ggagcgatga tagtgcccgg gccatcgcag ggacaaacgt gccggatcag
     2041 cgcgcttccg atcgtt
//
LOCUS       DASQWN010000704         2084 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_588334, whole genome shotgun sequence.
ACCESSION   DASQWN010000704 DASQWN010000000
VERSION     DASQWN010000704.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2084)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2084)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2084
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_588334"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..754)
                     /gene="dapB"
                     /locus_tag="VE686_13150"
     CDS             complement(<1..754)
                     /gene="dapB"
                     /locus_tag="VE686_13150"
                     /EC_number="1.17.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015822876.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008839 - 4-hydroxy-tetrahydrodipicolinate
                     reductase [Evidence IEA];
                     GO_process: GO:0009089 - lysine biosynthetic process via
                     diaminopimelate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-tetrahydrodipicolinate reductase"
                     /protein_id="HYY85433.1"
                     /translation="MRLVVVGAAGRMGRMLVQAIAATDGCRLAGALERPDSVALGEDA
                     GLLAGTGKSGVMITDDPLPVFAQADGVLDFSTPEASVANADLAAQARVVHVIGTTGLS
                     EADFKRLEAAARHARIVQSGNMSLGVNLLASLVRKAAATLGEDFDIEVLEMHHRMKVD
                     APSGTALLLGEAAAQGRAVALKDRSVRVRDGHTGARNAGDIGFASLRGGTVVGDHSVI
                     FAGPGERIELVHRAEDRGLFARGAVRAALWAMD"
     gene            complement(787..1092)
                     /locus_tag="VE686_13155"
     CDS             complement(787..1092)
                     /locus_tag="VE686_13155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012494076.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1330 domain-containing protein"
                     /protein_id="HYY85434.1"
                     /translation="MAKGYWVGRVDVHDPDTYKNYVAANGAAFSKYGGRFLVRGGKYE
                     TVKGASRSRNVVIEFPSYEAALECFHSPEYQAALRAQAGSAEVDLIVIEGYDGPQPG"
     gene            complement(1102..1392)
                     /locus_tag="VE686_13160"
     CDS             complement(1102..1392)
                     /locus_tag="VE686_13160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009763625.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1330 domain-containing protein"
                     /protein_id="HYY85435.1"
                     /translation="MPKGYVVATINVTDPEKWAEYAKDASEAIRKYGGRPLVRGGKHV
                     PLEGQPGARNVVIEFDSLDQAVTYFNSPEYQAAKAKREGAGTGHFVAVEGAA"
     gene            complement(1472..>2084)
                     /locus_tag="VE686_13165"
     CDS             complement(1472..>2084)
                     /locus_tag="VE686_13165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009735625.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HYY85436.1"
                     /translation="ALMGRNGAGKTTTLKAVMGLVAREAERLVFAGRPIAHCPSYKIA
                     RLGLGYVPEERRIFTDLTVYENLEVGRRPARSGREPWTAERLFRIFPNLAEMQGRRAS
                     HMSGGEQQMLTIARTLMGNPEAVLLDEPSEGIAPVVVELMAEAILAMKREGVAVLLCE
                     QNLAFASAVCDRAYVIERGHIRYDGSIAALAQDETLRDAYLSV"
BASE COUNT          285 a          735 c          735 g          329 t
ORIGIN      
        1 tgtccatggc ccagagcgcc gcgcgcacgg cgccgcgggc gaagaggccg cgatcctcgg
       61 ccctgtgcac gagctcgatg cgctcgccgg ggccggcgaa gatgacgctg tggtcgccca
      121 cgaccgtgcc gccgcgaagg ctcgcgaacc cgatatcgcc ggcgttgcgc gcgcccgtgt
      181 ggccgtcgcg cacgcgcacg gagcggtcct tgagcgccac ggcgcggccc tgcgccgccg
      241 cctcgcccaa cagaagcgcc gtgccggagg gcgcgtcgac cttcatgcgg tggtgcatct
      301 cgaggacctc gatgtcgaag tcctcgccca gtgtcgccgc ggctttgcga acgagactcg
      361 cgagcaggtt cacgcctagc gacatgttgc ccgattgcac gatgcgcgcg tggcgcgccg
      421 ccgcctcgag ccgcttgaag tcggcctccg acagccccgt cgtgccgatg acatggacaa
      481 cgcgcgcctg cgcggcgaga tcggcgttgg cgacgctcgc ctcgggcgtg gagaagtcga
      541 ggacgccgtc cgcctgcgcg aacacgggca ggggatcgtc ggtgatcatg acgccgctct
      601 tgccggtccc ggcaagcagc ccggcgtcct ccccgagggc gacggagtcc gggcgctcca
      661 gggcgccggc gaggcggcag ccgtcggtcg ccgcgatcgc ctggacgagc atgcgtccca
      721 tgcgtcccgc cgcgccgacc accacgagcc gcatctcggt catggctctc tccctcgcgc
      781 gtccgctcaa cccggctggg ggccgtcgta gccttcgatg acgatgaggt cgacctcggc
      841 gcttcccgcc tgcgcacgaa gcgccgcctg gtactcgggc gaatgaaagc attcgagtgc
      901 cgcctcgtag gacgggaact cgatgacgac gttgcggctg cggctcgcgc ccttcacggt
      961 ctcgtacttg ccgccgcgca cgaggaagcg tccgccgtac ttggagaagg cggcgccgtt
     1021 cgcggcgacg tagttcttgt aggtgtcggg gtcgtgcacg tcgacgcggc cgacccaata
     1081 gcccttcgcc atgtcgtcct cctacgcggc gccttcgacg gccacgaaat gccccgtgcc
     1141 ggcgccctcg cgcttggcct tcgccgcttg gtactcgggc gagttgaaat aggtgacggc
     1201 ctggtcgagc gagtcgaact cgatcaccac gttgcgggcg cccggctggc cttcgagggg
     1261 cacgtgcttg ccgccgcgca cgagcggccg gccgccgtac ttgcggatcg cctcgctcgc
     1321 gtccttggcg tactcggccc acttctcggg gtccgtgacg ttgatggtcg cgaccacata
     1381 tcccttcggc atcggcgtcc tgctcctcgc aatcgatcag catggctacc gtgcacctgc
     1441 ccgcaagcgc aaggtctgcg ggcggaaggc ttcacaccga cagatacgcg tcgcgcagcg
     1501 tctcgtcttg cgcaagcgcc gcgatcgagc cgtcgtagcg gatgtggccg cgctcgatga
     1561 cgtaggcgcg gtcgcagacg gcggatgcga aggcgaggtt ctgctcgcac aggagcaccg
     1621 cgacgccctc gcgcttcatg gcgaggatcg cctccgccat gagctcgacg acgaccgggg
     1681 cgatgccctc ggaaggttcg tcgagaagca ccgcttccgg gttgcccatg agggttcggg
     1741 cgatggtgag catctgctgc tcgccgcccg acatgtggct cgcgcggcgg ccctgcatct
     1801 cggcgaggtt cgggaagatg cgaaacaggc gctcggccgt ccacggctcg cggccggagc
     1861 gggcggggcg gcgcccgacc tcgaggttct cgtacacggt gaggtccgtg aagatgcgcc
     1921 tctcctcggg cacgtagccg aggccgagcc gggcgatctt gtagctcggg caatgggcga
     1981 tcggccgccc ggcgaagacg aggcgctccg cctcgcgggc gacgaggccc atgacggcct
     2041 tgagggtcgt cgtcttgccg gctccgttgc ggcccatgag cgcc
//
LOCUS       DASQWN010000705         4828 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_588498, whole genome shotgun sequence.
ACCESSION   DASQWN010000705 DASQWN010000000
VERSION     DASQWN010000705.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 4828)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4828)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4828
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_588498"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..531)
                     /locus_tag="VE686_13170"
     CDS             complement(<1..531)
                     /locus_tag="VE686_13170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015928502.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-octaprenyl-6-methoxyphenyl hydroxylase"
                     /protein_id="HYY85437.1"
                     /translation="MPLDPGSFRPPVPPWRIAIAGGGVAGLALALALRQGLGAAIDVV
                     LCDPALKRDSASDRRAYAVAADARRMLIVLGVWPALAGAVQPIRDMVVTDSRLQDPVR
                     PVFLTFAGEVEPGEPFAHMVEGGTLTTALLAACAAAGVTLRNTAVRGAVVQAQAIEAE
                     LVGGERLRCALVVAADG"
     gene            628..1500
                     /gene="tesB"
                     /locus_tag="VE686_13175"
     CDS             628..1500
                     /gene="tesB"
                     /locus_tag="VE686_13175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012335201.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0047617 - acyl-CoA hydrolase activity
                     [Evidence IEA];
                     GO_process: GO:0006637 - acyl-CoA metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA thioesterase II"
                     /protein_id="HYY85438.1"
                     /translation="MSRAIEELLGILDLEYLEQNLFRGRSPQVGWQRVFGGQVIGQAL
                     VAACRTVDVAARQPHSLHAYFLLPGDPKVPIIYEVDRIRDGRSFTTRRVKAIQHGQAI
                     FSMSASFHVAETGLAHAFPMERVPMPEDLPDERDIRANVMPLMPDPVRRYFESDRPIE
                     LKPVEYGRYLSREPMPPRFNAWIRATGRLPDDPAIHQCVLAYASDMTLLDSSLIAHGR
                     TVFERSIQAASLDHALWFHRSFRADEWLLYAQDSPSASGALGFSRGLIYTRDGTLVAS
                     VAQEGLIRDVGEPA"
     gene            1674..4736
                     /locus_tag="VE686_13180"
     CDS             1674..4736
                     /locus_tag="VE686_13180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009762912.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PAS domain-containing protein"
                     /protein_id="HYY85439.1"
                     /translation="MLARSGISDTTFLTGGGEMGARMRAHDWATSPLGPPERWPQSLR
                     TTVSLLLNSRFPMFVAWGPELGFLYNDDYLPILGAKHPAALGRPFAEIWDEIWGDVGP
                     LAERALAGEATFHEDMPLTMLRKGYEEETYFTFSYSPVRDESGRIGGMYCACTETTAE
                     VKARSSLKAEQERLRDLFRQAPGFMAVLRSPEHVFELTNDAYLQLVGYRDLVGKTVRE
                     ALPDVAGQGFFELLDRVYKSGEAFVGSRLPVRVQREVGGPPEERFVDFVYQPIADGRG
                     EVSGIFVEGTDVTEAVRSEQALRASEERLRIAQRTGGIGSFELVPSTGMLYPSEQFCR
                     LWWLPIRSEMPVADALARIHPDDRHRIVTGESNLPENALAYVEYRIVNPHSGSMRWMA
                     RRGEAVADEHGTRYVGVSYDISDRKAAEEALVAETQALEILNRTGSAVAAELDLDRLV
                     QLVTEAGVELTGAAFGAFFYNVVDEHGERYTLYAISGVPREEFSKFPMPRNTHVFAPT
                     FEGSGILRSGDITKDERYGRNDPHYGMPKGHLPVRSYLAVPVMSRTGEVLGGLFFGHP
                     DADVFDARAERLMEGVAGQAATAIDNARLFDAAQRDIAERKRAEEALQQLNATLEDQI
                     AERTEQLRRNEEALHHAQKMEAVGQLTGGIAHDFNNLLTGIIGSLDLLQTRMLQGRTG
                     DIDRYAKAAIASANRAASLTHRLLAFSRRQPLDPKPVNANKLVSSIEDLLRRTIGPSI
                     TLEFVMAGGLWTTLCDPNQLESAILNLVINARDAMPEGGKLVIETANAHLDDTYVAQQ
                     RDVTPGQYVAICVTDTGTGMPTEVMARAFDPFFTTKPIGQGTGLGLSMVYGFAKQSEG
                     HAKIYSEAGRGTTVKIYLPRHRGDDEQGEIMPRLAELPKVGAGETVLVVEDEPVVRDV
                     VVEILQDLGYQPLQATDGPSGLKVLQSRRRIDLLVTDVGLPGGINGRQLADLARARRP
                     ELKVLFITGYAENAAIAAGFLEPGMEMITKPFATDAFGAKVRAMLRRD"
BASE COUNT          770 a         1689 c         1641 g          728 t
ORIGIN      
        1 gccgtcggca gcgactacca gggcgcagcg caggcgctcg ccgccgacga gctcggcctc
       61 gatggcctgg gcctgcacga cggcgccacg caccgccgtg ttgcgaagag tgacgcccgc
      121 ggctgcgcag gcggcgagaa gggcggtcgt gagggtgccg ccttctacca tgtgggcgaa
      181 gggctcgccc ggctcgacct cgcccgcgaa ggtcaggaac accggccgga cggggtcctg
      241 tagccggctg tcggtgacga ccatgtcgcg gatcggctgc actgcgcccg cgagtgcggg
      301 ccagacgccg agcacgatga gcatgcgccg cgcgtccgcc gcgaccgcgt aggcgcgacg
      361 gtcggatgcg gaatcgcgct tcagcgccgg atcgcacaag accacgtcga tggcggctcc
      421 aagcccctgc ctaagggcga gcgccagcgc aaggccagcg acgccgccgc ccgcgatggc
      481 gatgcgccag ggcggcacgg gcggacggaa gcttccgggg tcgagcggca tcgcccttcc
      541 tcgccgctgg cgcggcagcg cgtcaagctt gacgccgcag cgccgttcga ggctcatgcc
      601 ggcacccgtg gcctggagga gccctgaatg tcgcgcgcga tcgaagagct tctgggcatc
      661 ctcgatctcg agtacctcga gcagaacctc ttccgcggcc gcagccccca agtcgggtgg
      721 cagcgggtgt tcggaggaca ggtgatcggg caggcactcg tcgccgcctg ccgcaccgtc
      781 gacgtggcgg cgcgccagcc gcactccctg cacgcctact tcctgctccc gggcgacccc
      841 aaggtgccga tcatctacga ggttgaccgc atccgggacg gccgcagctt cacgacgcgg
      901 cgcgtcaagg cgatccagca cggccaagcg atcttttcca tgtcggcatc gttccacgtc
      961 gccgagacgg gcctggcgca tgcgtttccg atggagcgcg tgccgatgcc ggaagacctg
     1021 ccggatgagc gcgacatccg tgccaacgtc atgccgctca tgcccgaccc cgtgcgccgc
     1081 tacttcgaga gcgaccgccc gatcgagttg aagcccgtgg agtacggccg ctatctctcg
     1141 cgcgagccga tgccgccgcg cttcaacgcc tggatccgcg ccacggggcg cctgcccgac
     1201 gatccggcga tccaccagtg cgtgctagcc tacgcgtccg acatgacgct cctcgactca
     1261 tcgcttatcg cgcacggtcg cacggtgttc gagagatcca tccaggccgc gagcctcgac
     1321 cacgccctgt ggtttcatcg ctcgttccgg gccgacgagt ggctgctcta cgcccaggac
     1381 agcccgagcg cgagcggagc cctcgggttc tcccgtgggc ttatttacac gcgcgacggc
     1441 accctcgttg cctcggtggc gcaggaaggt ctcatccgtg acgttggcga gccggcgtag
     1501 cgcgccagcg atcaaatgcg ggaatgatgg cttccctagc gggaacgcga ttgagtcggg
     1561 gccgttgaca ggtcgcctcc aggacctatg tgccccacaa tgcatcgagc ccgcacccgc
     1621 ggcgcgctag ccccgcgctg cccctttcct gccgccgcgg tgggcgcgtc ctgatgctgg
     1681 cgcggtccgg gatcagcgac accacgtttc tgacaggtgg cggcgagatg ggcgcgcgca
     1741 tgcgcgccca cgactgggcg acgtcgcctc ttggaccgcc cgagcgctgg ccgcaatccc
     1801 tgcgcaccac cgtcagcctt ctcctcaact cccgattccc gatgttcgtc gcctggggtc
     1861 cggaactcgg gttcctgtac aacgatgact accttccgat tcttggggcg aagcatccgg
     1921 ccgcgctcgg ccgaccattc gccgagatct gggacgagat ttggggcgac gtcggcccgc
     1981 tcgccgagcg cgcgctcgcg ggtgaggcga cgttccacga ggacatgccc ctcaccatgc
     2041 tccgcaaggg gtacgaggag gagacctatt ttacgttctc gtacagcccc gtgcgggacg
     2101 agagcggccg catcgggggc atgtactgcg cctgcacgga gaccaccgcc gaggtcaagg
     2161 cacgctcgtc tctgaaggcc gagcaggagc gcctccgcga cctgttccgg caggcgccgg
     2221 ggttcatggc ggtcctgcgc agtccggagc atgtttttga gctcaccaac gacgcctacc
     2281 tgcagctcgt cggctaccgc gacctcgtcg gcaagacggt gcgcgaggcg ctgccggacg
     2341 tcgccgggca gggcttcttc gagctcctgg accgcgtcta caagagcggc gaggctttcg
     2401 tcggcagccg cttgccggtt cgcgtgcagc gagaggtcgg cgggccgccc gaggagcgct
     2461 tcgtcgattt cgtctaccag ccaatcgccg acgggcgcgg cgaagtgtcg ggcatcttcg
     2521 tcgagggcac cgacgtcacg gaggcggtgc gctcggagca ggcgctgcgg gcgagcgagg
     2581 agcgcctgcg catcgcgcag cgcaccggcg gcatcggcag cttcgagctc gtgccctcga
     2641 cgggcatgct ctacccttcc gagcagttct gccggctttg gtggctgccg atcaggtcgg
     2701 agatgccggt tgcggacgcg ctcgcgcgca tccaccccga cgaccgccac cgtatcgtga
     2761 cgggagagag caatcttccc gagaatgcgc tcgcctacgt cgagtaccgc atcgtcaatc
     2821 cgcacagtgg gtcgatgcgc tggatggcgc ggcggggcga ggcggtggcg gatgagcacg
     2881 gcacccgcta cgtcggcgtg tcgtacgaca tcagcgaccg caaggccgcc gaggaggcgc
     2941 tcgtcgccga gacccaggcc ctcgagatct tgaaccgcac cggcagcgcg gtcgccgccg
     3001 aactcgatct cgaccggctc gtgcaattgg tcacagaggc cggcgtcgag ctcacgggcg
     3061 ccgccttcgg cgccttcttc tacaacgtgg tcgacgagca cggcgagcgc tacacgctct
     3121 acgccatctc gggcgtgccg cgggaggagt tttcaaagtt cccgatgccg cgcaacacgc
     3181 acgtgttcgc gccgacgttc gagggctccg gcatcctgcg ctcgggcgat atcaccaagg
     3241 acgagcgcta cggccgcaac gacccgcact acggcatgcc gaaggggcac ctcccggtgc
     3301 gcagctatct cgcggtaccg gtcatgtcgc gtacgggcga ggtcctaggc ggattgtttt
     3361 tcgggcaccc cgatgccgac gtattcgacg cgcgcgccga gcgcctgatg gaaggcgtcg
     3421 ccgggcaggc cgcgacggcc atcgacaacg cgcgcttgtt cgacgccgcg cagcgcgaca
     3481 tcgccgagcg caagcgggcc gaggaggcgc tgcagcagct caatgccaca ctcgaagacc
     3541 agatcgccga gcgcactgag cagctccgcc gcaatgagga ggcgctccac cacgcgcaga
     3601 agatggaggc cgtcggccag ctcaccgggg gcatcgcgca cgacttcaac aacctgctca
     3661 ccggcatcat cgggtcgctc gacctcctgc agacgcgcat gctgcagggg cgcaccggcg
     3721 acatcgaccg ctacgccaag gctgcgatcg cgtcggcaaa ccgcgccgca tcactcacgc
     3781 accgcctgct ggcgttctcg cggcgccagc ccctcgatcc gaagcccgtc aacgccaaca
     3841 agctcgtgag ttcgatcgag gatctgctcc ggcggacgat cggaccgtcc atcaccctcg
     3901 agttcgtcat ggccgggggc ctatggacga ccctgtgcga cccgaaccag ctcgagagcg
     3961 cgatcctcaa tctcgtcatc aacgcccgcg acgcgatgcc ggaaggcggc aagctcgtca
     4021 tcgagaccgc taacgcgcat ctcgacgaca cctacgtcgc gcagcagcgc gacgtcacgc
     4081 ccggtcagta cgtcgccatc tgcgtcaccg acaccggcac cggcatgccc accgaggtga
     4141 tggcccgggc cttcgatccg ttcttcacga cgaagccgat cgggcagggc actggtctcg
     4201 gcctgtcgat ggtctacggt tttgcgaagc agtcggaagg tcatgccaag atctattcgg
     4261 aggcgggccg cggcacgacg gtcaagatct acctcccgcg gcatcggggc gacgacgagc
     4321 agggcgagat catgccccgc ctggcggagt tgccgaaggt cggggcgggc gagaccgtcc
     4381 tcgtcgtcga ggacgagccg gtcgtgcgcg acgttgtggt cgagatcctg caggacctcg
     4441 gctatcagcc gctgcaggcg accgacgggc cgtcgggcct caaggtgctg cagtcgcgcc
     4501 gtcgcatcga cctgctcgtc accgacgtcg gactgccggg cggcatcaac gggcgccagc
     4561 tcgccgatct cgcccgcgcc cgccgcccgg agctgaaggt cctgttcatc acgggctacg
     4621 ccgagaacgc cgccatcgcg gcgggcttcc tcgagcccgg catggagatg atcacgaagc
     4681 ccttcgccac cgatgccttc ggggcgaagg ttagggcgat gctgcggcgg gactgagcgg
     4741 gtcgaagaac aaggcaagga atgatgagcg cagcggttgc gggcccgggc acgatgcggg
     4801 ccgccgtcct gaagggtccg gggcgggt
//
LOCUS       DASQWN010000706         2491 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_588936, whole genome shotgun sequence.
ACCESSION   DASQWN010000706 DASQWN010000000
VERSION     DASQWN010000706.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2491)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2491)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2491
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_588936"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..239)
                     /locus_tag="VE686_13185"
     CDS             complement(<1..239)
                     /locus_tag="VE686_13185"
                     /inference="COORDINATES: protein motif:HMM:NF036723.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA alkylation response protein"
                     /protein_id="HYY85440.1"
                     /translation="MLDRYGYATHEVLNQPPPLADYDAYATDPALRRIVTTFGAEWAD
                     EKLRAAGATVGSARVQTLARQANRHTPELKTHDRFG"
     gene            complement(311..877)
                     /locus_tag="VE686_13190"
     CDS             complement(311..877)
                     /locus_tag="VE686_13190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019401248.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exopolysaccharide biosynthesis protein"
                     /protein_id="HYY85441.1"
                     /translation="MTALAETSGERLTVEEIVSVLRDRAFALLVVLLGLPNCLPMPPP
                     IPLLSGLLLALVAAQLAAGWSYPWLPKALLRRSMATADVVRAVGRAMPTLLRLERWSR
                     PRMTVFESVLAVRLIGFILLALSIGLIFAAPIVGQIPLGIAVCLVGLGLVERDGVLVM
                     AGVAIGLLGLALSLGFIWAIVAGIDQLI"
     gene            complement(997..1266)
                     /locus_tag="VE686_13195"
     CDS             complement(997..1266)
                     /locus_tag="VE686_13195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012335153.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="usg protein"
                     /protein_id="HYY85442.1"
                     /translation="MVSKDFIRQLEGYGLTTANILYRMPDHPAFLQTFIWQEYDLAPK
                     FPVLYEFLEFWSAEIEGRLHSVTVAHSRLIKPAEFQVVDGIISLH"
     gene            1510..2256
                     /gene="bcsS"
                     /locus_tag="VE686_13200"
     CDS             1510..2256
                     /gene="bcsS"
                     /locus_tag="VE686_13200"
                     /inference="COORDINATES: protein motif:HMM:NF028346.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cellulose biosynthesis protein BcsS"
                     /protein_id="HYY85443.1"
                     /translation="MAFGTILSSPKTGAVLTALALAATPPAWADDRKAAAPQRTVLFS
                     SADAGSSGFLTVGAKRTLAGSLDESGPVALASIGAGGSPERMGLPGLGDAAFRPAVQA
                     SALAGYQWALGRTFLSLFAGPELDRDRFPSPGGPAREATRVGARVHGEIWMHPTDETL
                     VNGTAIAGTARGHLWTRASAGYKVWRDVFVGPEASLYRTEDYREWRVGAHATGVQLGR
                     FTFRLSTGWRRDESSPKGGPYGGLSVHVKM"
     gene            2321..>2491
                     /locus_tag="VE686_13205"
     CDS             2321..>2491
                     /locus_tag="VE686_13205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012252746.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formyl transferase"
                     /protein_id="HYY85444.1"
                     /translation="MRFAFAGIDFLGDVFLTLLDRGWTPVKLFTRPCDKVYDFNETVV
                     GRARSLNIPIQLS"
BASE COUNT          396 a          836 c          891 g          368 t
ORIGIN      
        1 ccgaagcggt cgtgcgtctt gagctccggc gtgtgccggt tggcctggcg cgcgagcgtc
       61 tgcacgcggg cgctgccgac tgtggcgccg gcggcacgca gcttctcgtc cgcccactcg
      121 gccccgaacg tggtcacgat ccgccgcagg gcgggatcgg tggcgtaggc gtcgtagtcg
      181 gcgagcggcg gcggctggtt caggacttcg tgggtcgcat agccgtagcg gtcgagcatg
      241 gcgccgatcc tggtgctgtc gccgccatca tggccaaacc cgaaggcgaa tgacagggct
      301 tgggcgcggc tcagatgagc tggtcgatcc cggcgacgat cgcccagatg aagccgaggc
      361 tcagagccag gccgagcagg ccgatggcga cccccgccat cacgaggacg ccgtcccgct
      421 cgacgagccc gagcccgacg aggcagacag cgatcccgag gggaatctgt ccgacgatcg
      481 gcgcagcgaa gatgaggccg atcgagagcg ccagcaggat gaacccgatc agccggaccg
      541 ccagcacgga ttcgaacacc gtcatgcgcg ggcgcgacca gcgctcgagg cgtaagagcg
      601 tcggcatggc gcggccgacg gcccgaacga cgtcggcggt ggccatcgag cgccgcagca
      661 gggccttggg cagccaggga tagctccagc cggcggcgag ctgcgccgcc acgagcgcaa
      721 ggagcagccc gctgagcagc gggatcggcg gcggcatggg gaggcagttc ggcagcccga
      781 gcaggacgac cagcagggcg aaggcacggt cgcgcagaac gctgacgatc tcttcgacgg
      841 tgaggcgctc tccggaggtt tcggcgagag cggtcaagac cgatgacgtg cgcgccttcg
      901 gaggcaaagg gggtccagcc ggttgggtgg ggaagtcggg cgcaccctct atcccactcc
      961 gtccggaccg ccaagggagg cggatggcga ggcggctcag tggagcgaga tgatcccgtc
     1021 caccacctgg aactcggccg gcttgatgag gcgggagtgc gccaccgtca ccgaatgaag
     1081 gcggccctcg atctccgccg accagaactc gaggaactcg tacagcacgg ggaacttcgg
     1141 cgcgaggtcg tactcctgcc agatgaaggt ctgcaggaac gcggggtggt ccggcatccg
     1201 gtagaggatg ttggcggtcg tcaatccgta gccctcgagc tgccggatga aatccttcga
     1261 gaccatgaga cctcctttcc gcggaagccg actcggggtg aacgcacggt cggtcccagg
     1321 gatcgtgtac gcacgtgctg ccgcactcaa gcttaaatcc tggatttcgt gtttagttcc
     1381 agggcattag cagcccagct taccgggtgc tgccaagctt gcgccgacct cggccgcgat
     1441 tttgggctgg ccttggccag caactctcgt aagttgttga tcggttgcaa gccatcgtga
     1501 gttctcggcg tggcgttcgg gaccattctc agctccccga agacgggcgc ggttctgacc
     1561 gccctcgcgc ttgccgcgac gcctccggca tgggccgacg accgcaaagc cgccgcgccg
     1621 cagcggaccg tgctcttcag cagcgcggat gcgggcagct cgggtttcct gacggtcggc
     1681 gccaagcgga cgctcgccgg cagcctcgac gagagcggtc cggtggcact ggcaagcatc
     1741 ggcgcgggcg gcagcccgga gcgcatggga ctgccgggcc tcggcgacgc cgccttccgg
     1801 ccggccgttc aggcgagcgc gctcgccggc taccaatggg cgctcgggcg caccttcctg
     1861 tccctctttg ccggtcccga gctcgaccgc gaccgcttcc cctcgcccgg cgggcctgcg
     1921 cgcgaggcga cgcgcgtcgg cgcgcgggta cacggcgaga tctggatgca tccaaccgac
     1981 gagacgctcg tcaacggcac ggccatcgcg gggacggcgc gcggacacct ttggacccgc
     2041 gcctcggccg gctacaaggt ctggcgcgac gtgttcgtcg ggccggaggc gagcctctac
     2101 cggacggagg actatcgcga gtggcgcgtc ggcgcgcacg cgacaggcgt ccagctcggg
     2161 cgcttcacct tccgcctctc gacggggtgg cgccgggacg agtcctcgcc gaagggcggc
     2221 ccgtacggag ggctgtccgt tcacgtaaag atgtagcgca ccccagcttt ggaccggcgc
     2281 tgcgacgcgc tacatgtggc gcgggccgag agctaccccc atgcgcttcg ccttcgccgg
     2341 catcgacttc ctcggggacg tcttcctgac cttgctcgac cgcggctgga cgcccgtgaa
     2401 gctgttcacg cgcccgtgcg acaaggtcta cgacttcaac gagaccgtcg tcgggcgcgc
     2461 gcgcagcctc aacatcccga tccagctgtc g
//
LOCUS       DASQWN010000707         5037 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_197362, whole genome shotgun sequence.
ACCESSION   DASQWN010000707 DASQWN010000000
VERSION     DASQWN010000707.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 5037)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5037)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5037
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_197362"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            132..416
                     /locus_tag="VE686_13210"
     CDS             132..416
                     /locus_tag="VE686_13210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018262630.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="septal ring lytic transglycosylase RlpA family
                     protein"
                     /protein_id="HYY85445.1"
                     /translation="MGRRIAVTRAAWYQHAGRTASGEKYNPDGLTAAHRTLPLGTKVR
                     VVNQRNGRSVVVRINDRVPKTAKQPVDLSRGSARAIGLTGIAPVALYEVK"
     gene            complement(494..2371)
                     /locus_tag="VE686_13215"
     CDS             complement(494..2371)
                     /locus_tag="VE686_13215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019903518.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC-F family ATP-binding cassette
                     domain-containing protein"
                     /protein_id="HYY85446.1"
                     /translation="MLHVTDLTYRLGERALFDGASFAVPTGARVGVLGRNGAGKSTLF
                     RVLLGEVAAESGTVGLPRGARIGAVAQEAPSGPERLIDVVLAADTERTALLAEAEHAD
                     GLRRAEIETRLADIGAHSAPARAAAILHGLGFDAEAQERPCSAFSGGWRMRVALAAIL
                     FSEPDLLLLDEPTNYLDIEGTLWLYDFLARYPHTALIISHDRDLLDTAVDHILHLDQG
                     KLTLYRGDYTTFARRLAERQLQQTKMREKQEAERKHLQAFVDRFRAKASKARQAQSRV
                     KRLAKLEPIAAVVEDATLRFDLPGPERALAPPLVALEGVAAGYGERAVLDRLNLTILP
                     DDRIALLGSNGNGKSTFCKLIGGRLKPMRGEMRASPKLDAAYFAQHQLDELNPNATVF
                     DHVAKRMPDAPVAKVRARAARFGFPGGRADTVVSALSGGEKARLLMGLAAFEGPHLLI
                     LDEPTNHLDIDSRAALLDAINDYTGAVILVSHDRFLIEACADQLWLVANGGVKPFDGD
                     MDDYRRLVLSGGLDAPSRAKEPEAARPSRTDERRAAAERRVALAPLRKRLEAVEGRME
                     KLGAVVAKVDAALGDGTAFLKDPAKASELARMRADAAAALAAAEEEWLSLSGEIEAAH
                     A"
     gene            2513..3199
                     /locus_tag="VE686_13220"
     CDS             2513..3199
                     /locus_tag="VE686_13220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007562140.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0030552 - cAMP binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Crp/Fnr family transcriptional regulator"
                     /protein_id="HYY85447.1"
                     /translation="MARLAAIGLLKDAGVDLAPFEARAHWRRFEPNEILVDFDDVSSD
                     VYFLVSGEVRVLIRTPSGKEVILSEMRGGQLFGELAALDGVKRSANVTALTRGEACIM
                     SATVFRELVFSSQVVTDRLFRLLTARVRELNGRLIEHAVLDLRHRLYAELLRMSVPRP
                     GHDGERVVTPPPFHHVLANRIGCRREQITREFTTMAHDGLVERTRGALVLRRPDVLAA
                     RVQEAMREDA"
     gene            3295..4374
                     /locus_tag="VE686_13225"
     CDS             3295..4374
                     /locus_tag="VE686_13225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009763235.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-TA family PLP-dependent enzyme"
                     /protein_id="HYY85448.1"
                     /translation="MTALAERIAREYGTPAVAIDLDVVERNIARLQAACDAAGVANRP
                     HIKTHKSPVIARLQRDAGARGITCQKVGEAEVMADAGLDDILISYNILGEEKLGRLAA
                     LMRKARMVVAADNPTTVAGLPRAAEISGRTLEVVVECDTGRKRAGVESAAEAIALAKD
                     IASRPGLAFAGFLLYPPETAIEATQAFFDEALAGVREAGLEARIVSTGGTPNLKNLGR
                     IKGTTEHRAGTYIFNDRMMMRCGAATLDDCALNVISTVVSRAAPERGILDAGSKTLTA
                     DPGGGLDGYGLILEYPEARIKQFAEEHGFLDLSGSQARPKVGEVVRIVPNHVCVVVNM
                     VDRLVATRGEEIVGEIPVAARGRIS"
     gene            4453..4785
                     /locus_tag="VE686_13230"
     CDS             4453..4785
                     /locus_tag="VE686_13230"
                     /inference="COORDINATES: protein motif:HMM:NF020376.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_function: GO:0016818 - hydrolase activity, acting on
                     acid anhydrides, in phosphorus-containing anhydrides
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HIRAN domain-containing protein"
                     /protein_id="HYY85449.1"
                     /translation="MPRTYPSAVVGLRRRTWFRSRARYVAKQVEVGDPVTLRREPRNR
                     HDATAVAVRHHGFKIGYIPSGSWVSGSMDKGDKHQARVAAIETHGWWLWKRAVGLTID
                     ISILSDGQ"
     gene            complement(4813..>5037)
                     /locus_tag="VE686_13235"
     CDS             complement(4813..>5037)
                     /locus_tag="VE686_13235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016845347.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016627 - oxidoreductase activity, acting
                     on the CH-CH group of donors [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase family protein"
                     /protein_id="HYY85450.1"
                     /translation="WLDTQGVDATREVSMAKAYCGELVNEVMYDCVQFHGGMGFMRES
                     TIERMARDARVQSIGGGATEVMLEEVAKRL"
BASE COUNT          728 a         1781 c         1810 g          718 t
ORIGIN      
        1 ccagcgatcc ctcgccggcg gcggtcgccg tggcgcccgc cgctcaggaa ccggcacagg
       61 ccaccggaac catcgcacgc gcgctgccgc cgacacgggc ggcggccgca gatccggcgg
      121 ctcgcgataa gatcggccgt cgcatcgccg tgacgcgggc tgcctggtac cagcacgccg
      181 gccgcacggc ttcgggggag aaatacaatc cggacgggct gacggccgcc catcgcaccc
      241 tgccgctcgg gacgaaggtg cgggtggtca accagaggaa cggccgctcg gtggtggtgc
      301 gcatcaacga ccgcgtgccg aagaccgcaa agcagcctgt cgatctgtcc cgcggcagcg
      361 cccgtgccat cggcctgacc gggatcgcgc ccgtcgcgct ctacgaagtg aagtgaagcc
      421 tggtcatctc agcgagggcg gggatcgatg ccgccgtcgc cgccacgcct aggaacgggc
      481 atgacgggcg ccgtcaggcg tgcgcggcct cgatctcgcc ggacaggctg agccactcct
      541 cctcggcggc cgcaagcgcc gcggcggcgt cggcgcgcat gcgggcgagc tcgctggcct
      601 tcgcggggtc cttgaggaag gccgtgccgt cgccgagcgc cgcgtcgact ttggcgacga
      661 cggctccgag cttctccatg cgcccttcca ccgcctccag ccgtttgcgc aaaggggcga
      721 gcgcgacgcg gcgctcggcc gcggcccggc gctcatccgt gcgcgacgga cgcgccgcct
      781 caggctcctt cgcccgtgag ggggcatcga ggccgcccga gaggacgagg cgccggtaat
      841 cgtccatgtc gccgtcgaac ggcttcacgc cgccgttcgc gacgagccag agctggtcgg
      901 cgcaggcctc gatgaggaag cggtcgtggc tcaccaggat caccgccccg gtgtagtcgt
      961 tgatcgcgtc gaggagggcc gcgcggctgt cgatgtcgag gtggttggtc ggctcgtcga
     1021 ggatgagcag atgcgggccc tcgaaggccg caaggcccat gaggagccgc gccttctcgc
     1081 cgcccgagag ggcggaaacc accgtgtcgg cccggccgcc cgggaagccg aagcgcgccg
     1141 cccgggcccg gaccttggcg acgggtgcgt cgggcatgcg cttggcgacg tgatcgaaga
     1201 cggtcgcgtt cgggttcaac tcgtcgagct ggtgctgggc gaaataggcc gcgtcgagct
     1261 tcggcgaggc gcgcatctcg ccgcgcatgg gcttcagacg cccgccgatc agcttgcaga
     1321 aggtggactt gccgttgccg ttcgagccga gcagcgcgat gcggtcgtcc ggcaggatgg
     1381 tcaggttgag ccggtcgagc acggcgcgct cgccatagcc cgcggcgacc ccctcgagcg
     1441 ccacgagggg cggggcgagc gcgcgctccg ggccgggcag gtcgaagcgc agggtcgcgt
     1501 cctcgaccac cgccgcgatg ggctcgagct tggcgagccg cttcacccgc gattgcgcct
     1561 ggcgcgcctt cgacgccttg gcgcggaagc gatcgacgaa ggcctgcagg tgcttgcgct
     1621 cggcttcctg cttctcgcgc atcttggtct gctgcagctg ccgttcggca agccggcgcg
     1681 cgaaggtggt gtagtcgccg cggtagagcg tgagcttgcc ctggtcgagg tggaggatgt
     1741 ggtcgactgc cgtgtcgagg aggtcgcggt cgtgactgat gatcagcgcg gtatgaggat
     1801 agcgggcgag gaagtcgtag agccagagcg tgccctcgat gtcgaggtag ttggtcggct
     1861 cgtcgaggag caggaggtcg ggctcggaga acaggatggc ggcgagggcc acgcgcatgc
     1921 gccagccgcc cgagaaggcc gagcacggcc gctcctgggc ctcggcgtcg aacccgagcc
     1981 cgtgcaggat ggcggcggcg cgggccggcg ccgaatgggc gccgatgtcg gcaagccgcg
     2041 tctcgatctc ggcccggcgc aggccgtcgg cgtgctccgc ctccgcaagc agggcggtgc
     2101 gctccgtatc ggccgcgagc accacgtcaa tgaggcgctc ggggccgctc ggcgcctcct
     2161 gcgccacggc gccgatgcgc gccccgcggg gcaggccgac ggtgccgctc tcggccgcga
     2221 cctcgccgag aagcacgcgg aacagggtcg acttgccggc gccgttgcgg ccgagcacgc
     2281 cgacgcgggc acccgtcggg accgcgaacg aggcgccatc gaacagggcg cgctcgccga
     2341 ggcggtaggt gaggtccgtc acgtgcagca tggcggcctt ttgaacgctg gcgcttgggc
     2401 gtgcaaggca gcgatccgcc gcgctcggcg cctgcgacgg cgaggccggg ccggccgcct
     2461 tgaccctggc cgagctttcc cgcgacgatc ctgacgtcgg agaggaatcg gaatggcgcg
     2521 gctcgccgca atcggactgc tcaaggacgc cggcgtcgac ctcgcgccct tcgaggcgcg
     2581 ggcgcactgg cgtcgcttcg agccgaacga gatcctcgtc gacttcgacg acgtgtcgag
     2641 cgacgtctac ttcctcgtct ccggcgaggt ccgggtgctg atccgcacgc cgtccggcaa
     2701 ggaggtcatc ctcagcgaga tgcgtggcgg gcagctgttc ggcgaactcg cggcgctcga
     2761 cggtgtcaag cgctccgcca acgtgacggc gctcacccgt ggcgaggcct gcatcatgtc
     2821 ggccacggtg tttcgcgagc tggtgttctc gtcccaggtg gtgaccgacc ggctgttccg
     2881 gctcctcact gcgcgcgtcc gcgagctcaa cggacggctc atcgagcacg ccgtgctcga
     2941 tctgcgccac cggctctacg ccgagcttct gcgcatgtcg gtgccgcgcc ccgggcacga
     3001 cggcgagcgc gtcgtcacgc cgccgccctt ccatcacgtg ctggcaaacc gcatcggctg
     3061 ccggcgcgag cagatcacac gcgagttcac gaccatggcc catgatggcc tcgtcgagcg
     3121 cacccgcggc gccttggtgc tccgccgccc cgacgtcctc gccgcccgcg tgcaagaggc
     3181 catgcgcgag gacgcgtaag cccgccgcac gcggcgccgg ttcagcttcg gcgcgccgtg
     3241 ctctacaatg gcccgtccgg atcgcttgca gccggcactt ttcaaggagc ttcgatgacc
     3301 gccttggctg aacggatcgc gcgcgagtac ggcactccgg cggtcgccat cgaccttgac
     3361 gtggtcgagc gcaacatcgc ccgtctgcag gccgcctgcg acgccgccgg cgtggcgaac
     3421 cgcccgcaca tcaagaccca taagagcccc gtgatcgccc ggctgcagcg cgacgcaggc
     3481 gcgcgcggca tcacctgcca gaaggtcggc gaggccgagg tgatggccga cgccggcctc
     3541 gacgacatcc tgatcagcta caacatcctc ggcgaggaga agctcgggcg tctcgcggcg
     3601 ctgatgcgca aggcccgcat ggttgtcgcc gccgacaacc cgacgaccgt cgcggggctg
     3661 ccgcgcgcgg ccgagatctc gggccgcacc ctcgaggtcg tcgtcgagtg cgacaccggc
     3721 cgcaagcgcg ccggcgtcga gagcgccgcc gaggcgattg cgctggccaa ggacatcgcg
     3781 agccgccccg gcctggcctt tgccgggttc ctgctctacc cccccgagac ggcgatcgag
     3841 gcaacgcagg cgttcttcga cgaggcgctt gcgggcgtgc gcgaggccgg gctcgaggcg
     3901 cgcatcgtct cgaccggcgg cacgccgaac ctcaagaacc tcggccgcat caagggcacg
     3961 accgagcacc gggccggcac ctacatcttc aacgaccgca tgatgatgcg ctgcggcgcc
     4021 gccaccctcg acgactgcgc cctgaacgtc atctctacgg tggtgagccg cgccgcgccc
     4081 gagcgcggca tcctcgacgc cggctcgaag accctcacgg ccgatcccgg cggcggcctc
     4141 gacggctacg ggctgatcct cgagtacccg gaggcgcgga tcaagcagtt cgccgaggag
     4201 cacgggtttc tcgacctgtc gggctcgcag gcgcggccca aggtcggaga ggtggtccgc
     4261 atcgtcccga accacgtctg tgtcgtcgtc aacatggtcg accgcctcgt cgccacgcgc
     4321 ggcgaggaga tcgtgggcga gatccccgtc gcggcgcgag gcaggatcag ctgaggcgcg
     4381 aggcggcgcg cagccgccgt cgacttcggc ccgagacttt cgcgtccggt cggccgcgtc
     4441 catgatggtt ggatgcctcg cacttaccca tccgccgttg tgggcctgcg ccgccggacc
     4501 tggttcaggt cgcgcgccag gtatgtggca aagcaggtcg aggtcggcga tcccgtcacg
     4561 ctgcggcgcg agccgcgcaa ccggcacgac gccaccgcgg tggcggtccg ccatcacggc
     4621 ttcaagatcg gctacatccc gagcgggtcg tgggtctcgg gctcgatgga caagggcgac
     4681 aagcaccagg ccagggtggc ggccatcgag acccacgggt ggtggctgtg gaagagggcg
     4741 gtcggcctca cgatcgacat ctcgatcctg agcgacggac agtagcaggc ggccggcatc
     4801 cgtcgcaccc gctcaaagcc gcttcgccac ctcctccagc atgacctccg tcgcgccgcc
     4861 gccgatcgat tggacgcgcg cgtcgcgggc catgcgctcg atggtgctct cgcgcatgaa
     4921 gcccatgccg ccgtggaact gcacgcaatc gtacatgacc tcgttcacga gctcgccgca
     4981 gtacgccttg gccatggaga cctcccgcgt cgcgtcgaca ccttgcgtgt cgagcca
//
LOCUS       DASQWN010000708         2104 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_591883, whole genome shotgun sequence.
ACCESSION   DASQWN010000708 DASQWN010000000
VERSION     DASQWN010000708.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2104)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2104)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2104
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_591883"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..646
                     /locus_tag="VE686_13240"
     CDS             <1..646
                     /locus_tag="VE686_13240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012042493.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="LysR substrate-binding domain-containing
                     protein"
                     /protein_id="HYY85451.1"
                     /translation="ALSDLREKPAGTIRITVGDHPYKTVLRPKLTRLLRAYPDIKVDV
                     VIDNSLRDIAADGFDAGVRLGEQVAKDMIAVRIGPDVRFAVVGAKSYLANRPPPRTPR
                     ELTDHTCINLRLPTHGGLWAWDFERDGRELKVRVEGQIILSSIFEILDAALDGFGLAY
                     VPEDLALPHITKGRLVRILEEWCPPWPGYHLYFPSRRQTSPVLALLIEALRYRQ"
     gene            complement(1074..1283)
                     /locus_tag="VE686_13245"
     CDS             complement(1074..1283)
                     /locus_tag="VE686_13245"
                     /inference="COORDINATES: protein motif:HMM:NF017717.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AlpA family phage regulatory protein"
                     /protein_id="HYY85452.1"
                     /translation="MTKITDRIIRWPEVKARTGLSRTTAWREMRAGRFPSAVRLTNQI
                     VGWRETEIDRCVESRATRNGSSVPR"
     gene            complement(1525..>2104)
                     /locus_tag="VE686_13250"
     CDS             complement(1525..>2104)
                     /locus_tag="VE686_13250"
                     /inference="COORDINATES: protein motif:HMM:NF015431.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="LysR family transcriptional regulator
                     substrate-binding protein"
                     /protein_id="HYY85453.1"
                     /translation="AADSATHVMPLLAELKRRHAGLTFSIQIGNSSDVLKLVLDHAAD
                     VAVTAKETSDPRIHSVRLRTDHLVVFVPARHAWARRRRIALGALAGCELVLRERGSIT
                     REVFEARLAQASVRPASIVEVQSREAVREAVAAGFGVGVIFDSEFGADPGFCKLAVAG
                     ADLSVAEYVVCLEERRRVPLVRSFLDLLMATN"
BASE COUNT          370 a          687 c          649 g          398 t
ORIGIN      
        1 ggccttgagc gacctgcgcg agaaacctgc cgggacaatc cggatcaccg tcggcgacca
       61 tccttacaag acggtactcc ggccgaagct gacgaggctt ctgcgggcct atcccgacat
      121 caaggtggat gtcgtcatcg acaacagcct gagggacatt gccgcggacg gcttcgatgc
      181 gggggtgcgc ctgggcgagc aggtcgcaaa agatatgatc gcggtgcgca tcggaccgga
      241 tgtccggttt gccgtcgtcg gcgccaagtc gtacctcgcg aaccgcccgc cgccccgaac
      301 tcctcgagag cttaccgatc acacttgcat caacctgcgg cttcccaccc atggcgggct
      361 ctgggcctgg gatttcgaga gagacggccg cgaactgaag gtgcgggtgg aaggccaaat
      421 catcttgagc agcatcttcg agatccttga tgccgcgctc gacgggttcg gactagccta
      481 tgttccggaa gatttggcgc tgccccatat cacaaaaggt cgcctggtgc ggatcctcga
      541 ggagtggtgc cccccctggc cggggtatca cctctatttt ccgagccggc gtcaaacgtc
      601 gccagttttg gcgctcttga tcgaagcgct gcgataccgc cagtaatccc tgcctgatct
      661 ccgcttctgc ttcaggagcg gacatcgccg aatgtgggct tcgcggtcaa ctcggtgcga
      721 cacggggcca ggcgcgagag cggcgtggta tggctttcgg aaggcgggtg gccgcgtgca
      781 gtccctcagc tgtgtcgaca tcagcgaaga gcccaccgac ccaacccaac tgacgctcac
      841 catcgcggct cccatcagct gcgccgtcag cacgcaacgc gcagcgtaga tgtcctcagg
      901 cgcgccatgc tcaatagcga actgcgccgc ggcgtcgagt tccgtcgtcg gaatgcgcca
      961 tgtttgttct ccccgcggct gccacagcac caacgagccg cttggtgggg ccctgtggaa
     1021 aagcacttcg aaaagatcgc gggcttcctc gaagctctcg tttcgcgtcg tggtcatcgc
     1081 ggaacactcg aaccattgcg cgtggctcga ctttcgacgc aacggtcgat ctcggtctct
     1141 ctccagccga ctatctggtt cgtcagccgg acagccgatg ggaaacgtcc ggcgcgcatt
     1201 tcacgccacg cggttgttcg gcttagccca gtacgtgcct tcacctctgg ccaacgtatg
     1261 atccggtcag taatcttggt catctcagca ctccgttcga gacgaccgtc tagattgcag
     1321 cagatttcac ggatgttcgc tgaagttcgg tggtttcggt cggaatctcc cgacaattgc
     1381 ttgctggttc ttaagtcgct ggttcggcca gttttttgac ggggtgaccc cgccgcctcg
     1441 tggagatcgc ctgtcgtgcc gcaggatgcg ttcgtctacc ccgccgatcc gtacgggctc
     1501 gcgctggtac gcgccgggta gaactcaatt cgttgccata agaaggtcga ggaagctccg
     1561 caccaacgga acgcgccggc gttcctcgag gcagaccaca tactcggcga ccgagaggtc
     1621 agcgcccgcg acggcgagct tgcagaaccc tggatctgcg ccgaattcgc tatcgaagat
     1681 cacgcccacg ccaaagccgg cggccacggc ctcccgcacg gcctcccggc tctgcacctc
     1741 gacgatactg gcgggccgca cgcttgcttg cgcaagccgc gcctcaaaca cctctcgcgt
     1801 gatcgatcca cgctctcgca ggacgagctc gcacccggcg agcgcgccga gcgcgatcct
     1861 gcgccggcgc gcccaagcgt gccttgcggg gacaaagacg acgaggtggt ccgtgcgcag
     1921 ccgcaccgaa tgaattcgcg gatcagacgt ctccttggcg gtcacggcga cgtccgcggc
     1981 gtggtcgagg acgagcttga gcacgtctga cgagttgccg atttggatcg agaacgtcag
     2041 ccccgcatgg cggcgcttca gctctgcgag cagcggcatg acgtgggtcg cgctgtcggc
     2101 cgcc
//
LOCUS       DASQWN010000709         2344 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_384341, whole genome shotgun sequence.
ACCESSION   DASQWN010000709 DASQWN010000000
VERSION     DASQWN010000709.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2344)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2344)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2344
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_384341"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..449)
                     /locus_tag="VE686_13255"
     CDS             complement(<1..449)
                     /locus_tag="VE686_13255"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="protein TolA"
                     /protein_id="HYY85454.1"
                     /translation="MALKFDTREPGMVLSGVAHVALLGAALFAATSRPLPPAEEGIPV
                     EVITENQLSEITKGETSAKVALPDPKPRAERQADVRVERDPGEAPKDVPSPPTRPVEV
                     KVADEAVEAAAAPPPPPPPARPLEKTPEPPKREAEKQPDPTPVPQPPR"
     gene            complement(475..924)
                     /gene="tolR"
                     /locus_tag="VE686_13260"
     CDS             complement(475..924)
                     /gene="tolR"
                     /locus_tag="VE686_13260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020093363.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0098567 - periplasmic side of plasma
                     membrane [Evidence IEA];
                     GO_function: GO:0015078 - proton transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0061024 - membrane organization [Evidence
                     IEA];
                     GO_process: GO:1902600 - proton transmembrane transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protein TolR"
                     /protein_id="HYY85455.1"
                     /translation="MAASSGVHHGPGGRRRRRVRHARAINEINMTPFIDVMLVLLIIF
                     MVAAPLMSGGVPLDLPKTSAAPLNVDAKPITLSIKATGQVFLGEDELRDDEIVSRLNA
                     TAKSGPDERVFVRGDKKVDYGRVAQVMSIVTGAGFKRVALVTEPDQK"
     gene            complement(940..1659)
                     /gene="tolQ"
                     /locus_tag="VE686_13265"
     CDS             complement(940..1659)
                     /gene="tolQ"
                     /locus_tag="VE686_13265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003602810.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0015078 - proton transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:1902600 - proton transmembrane transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protein TolQ"
                     /protein_id="HYY85456.1"
                     /translation="MNAADAVQATQTAHDISLLGLFLNAHIVVKLVMFGLLGASVWCW
                     AIIVDKTLLYRRTKRALDAFEEVFWSGRSLDELYRTLADRPATGLGALFVAAMREWKR
                     SFEGNGRSVASLGQRIDKVLDVTIQREVERLDSKLLVLASIGSAGPYIGLFGTVWGIM
                     ASFTAIAASKNTSLAVVAPGIAEALFATAIGLFAAIPAVLAYNKLQSEVSKIQSRLES
                     FADEFSAILSRQIDERIALAA"
     gene            complement(1847..2302)
                     /gene="ybgC"
                     /locus_tag="VE686_13270"
     CDS             complement(1847..2302)
                     /gene="ybgC"
                     /locus_tag="VE686_13270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007566858.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_function: GO:0047617 - acyl-CoA hydrolase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tol-pal system-associated acyl-CoA thioesterase"
                     /protein_id="HYY85457.1"
                     /translation="MTESSGSGAGVGRLDGDTHLLPVRVYYEDTDFSGVVYHASYLRF
                     MERGRTELLRATGVDQSELHGAEEGLSFAVRRMTIDYLKPARMDDVLTIETRTGEIRG
                     ASLVMAQRVLRGDEVLVTADVRVAAISRGRPARIPDTLRGLLHPAERQR"
BASE COUNT          346 a          793 c          853 g          352 t
ORIGIN      
        1 cgcggcggct gcggcacggg cgtcgggtcg ggctgcttct cggcctcgcg cttcggcggc
       61 tcgggagtct tctcgagcgg acgggcgggc ggcggcggag gcggcggggc cgcggcagcc
      121 tcgacggcct catcggcgac cttcacctcg acagggcgcg tcggcggcga cggcacgtct
      181 ttcggcgcct cgccaggatc acgctcgacg cgcacatcgg cttggcgctc ggcgcgcggc
      241 ttggggtcgg gaagcgccac cttggcgctc gtctcgccct tggtgatctc ggacagctgg
      301 ttctcggtga tgacctcgac cgggatgccc tcctcggccg gggggagcgg gcgcgacgtg
      361 gcggcgaaca gggccgcccc gaggagcgcc acgtgggcta ctcccgacag gaccatgccc
      421 ggctcgcggg tgtcgaactt caacgccacc tggtcagccc ccgaggcgtc cgcgtcactt
      481 ctggtcgggc tcggtcacga gcgcgacgcg cttgaagccc gcgcctgtca cgatcgacat
      541 cacctgcgcg acgcggccgt agtccacctt cttgtcgccg cgtacgaaga cccgctcgtc
      601 gggcccgctt ttcgccgtgg cgttgaggcg cgacacgatc tcgtcgtctc gcagctcgtc
      661 ctcgccaagg aagacctggc cggtcgcctt gatggacagg gtgatgggct tggcgtccac
      721 gttgaggggc gccgccgagg tcttcggcag gtcgaggggc acgccgccgc tcatcagcgg
      781 ggccgccacc atgaagatga tgaggaggac gagcatgacg tcgatgaacg gcgtcatgtt
      841 gatctcgttg atcgcgcgcg cgtgccgcac gcgtcggcgc cgtcgcccgc cgggtccgtg
      901 gtgcacgcct gaggaagccg ccattgcgcc ctcctcccgt caagccgcga gcgcgatgcg
      961 ctcgtcgatc tggcgcgaca ggatggccga gaactcgtcc gcgaagctct cgagccgcga
     1021 ctggatcttc gacacctcgg actggagctt gttgtaggcg aggaccgccg gaatcgcggc
     1081 gaagaggccg atcgcggttg cgaagagcgc ctcggcgatg ccgggcgcca cgacggcgag
     1141 gctggtgttc ttcgaggccg cgatggcggt gaaggaggcc atgatgcccc acacagtgcc
     1201 gaagaggccg atgtaggggc cggcggagcc gatcgaagcg aggacgagga gcttcgagtc
     1261 gaggcgctcg acctcgcgct ggatggtcac gtcgaggacc ttgtcgatgc gctgcccgag
     1321 gctcgcgacc gagcgcccgt tgccctcgaa ggagcgcttc cactcgcgca tggcggcgac
     1381 gaagagcgcg ccgaggcccg tcgcagggcg gtccgccagg gtgcgataga gctcgtcgag
     1441 ggagcggccc gaccagaaca cctcctcgaa ggcgtcgagg gcgcgcttgg tgcgccggta
     1501 gagcagcgtc ttgtcgacga tgatggccca gcaccacacc gatgcgccaa gcagcccgaa
     1561 catgacgagc ttgaccacga tgtgggcgtt caggaacaag ccgagaaggg agatgtcgtg
     1621 cgcggtctgc gtcgcctgca cggcgtcggc ggcgttcatg cgaagtcctc ggttgtcagg
     1681 agccgccggt tgtccgggct ggccctcggc gcgtgacgaa acgcgcggcc ctcgtggctg
     1741 cccccgctcg ttcccctgaa aatctgtcga aaatgagggc gcacgagcgg cgaccgggct
     1801 ggcgagccgc ggattagttt aagccggccg taaggttaag gccgggttac cgctggcgct
     1861 cggccgggtg gagaagcccg cgcagcgtat ccgggatgcg cgccggacgc ccgcgcgaga
     1921 tcgcggcgac gcgcacgtcc gcggtgacca gcacctcgtc gccgcgcagc acgcgctggg
     1981 ccatcacgag cgacgcgccg cggatctcgc cggtgcgggt ctcgatggtc agcacgtcgt
     2041 ccatgcgggc gggcttcagg tagtcgatcg tcattcgccg caccgcaaac gacagcccct
     2101 cctcggcccc gtgcaactcc gactggtcga cccccgtggc gcgcaggagc tctgtccgcc
     2161 cccgttccat gaagcgcagg tagctcgcgt ggtagacgac gcccgagaag tccgtgtcct
     2221 cgtagtagac ccgcacaggc agcaggtgcg tgtcgccatc gaggcgtcct acgccagcgc
     2281 cggacccgga cgactcagtc atcgccggcc ccgccgaaga ggccgaactg cgcggccggg
     2341 tcgc
//
LOCUS       DASQWN010000710         2146 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_385764, whole genome shotgun sequence.
ACCESSION   DASQWN010000710 DASQWN010000000
VERSION     DASQWN010000710.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2146)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2146)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2146
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_385764"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..324)
                     /locus_tag="VE686_13275"
     CDS             complement(<1..324)
                     /locus_tag="VE686_13275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012113589.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid ABC transporter
                     permease"
                     /protein_id="HYY85458.1"
                     /translation="MKRALWIGLFAAAAVLPLLLDPRGYWIRVLTLTFLFAAMAQAWN
                     IVGGLANQISLGHAAFFGVGAYASTILLVTYGLTPWIGLVVGAGLAAVAALVIAVPTM
                     RLQGHY"
     gene            complement(321..1181)
                     /locus_tag="VE686_13280"
     CDS             complement(321..1181)
                     /locus_tag="VE686_13280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012113588.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0015803 - branched-chain amino acid
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid ABC transporter
                     permease"
                     /protein_id="HYY85459.1"
                     /translation="MAIVQAILDGILIGGVYAVISIGLTLVYGVMGIVNFAHAEFLMI
                     GMFAAYFAWALLGIDPILAAPLAFATAFVLGWLVQRFLIQRVLAAPSVAQIFLTVGLL
                     IVLENGALLLFGSQFRSVNTPYQTMSLSLGPLFVSVPYLAAFVLSLLSGLALWQFMRR
                     SWLGRAMRATAQNRNAALLMGIDADRMYALAFALGVGLTAFGGAIILPYMTASPTVGG
                     QFVILMFTVVVLGGLGNVLGAVVGGLAVGTIQSLSSLAFPIQLQNLVLFVIFILMLAL
                     RPEGLVRSRR"
     gene            complement(1201..>2146)
                     /locus_tag="VE686_13285"
     CDS             complement(1201..>2146)
                     /locus_tag="VE686_13285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012113587.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HYY85460.1"
                     /translation="TTAATVAQRLITQNEVTAILGAFASSLTIAISEVTERRDIPLLT
                     MSFADQITGRGFKNIFQVVAKASAIGKAQFDYTLAIAGAAGQKLGKVAIMYEDTAYGT
                     AQAGGLRAGAKAAGVEIVMDDAYPLGITDATPLINKLRGSGAQAVFPVSYLNDSLLII
                     RTMRQQRITMPAVGGAAGYVIPDFEKGLGEFAEGVLSIAPANYDYRPELTERFRKKYG
                     YFMVHEALEHAVCLDVLAQAIERAKSAKPEEVVKHLRGARFEGGWAKAMTGDAVQFDA
                     TGLNTLSVPVMTQWRKKELVTVWPKEVAKGEAVWEKTS"
BASE COUNT          386 a          699 c          759 g          302 t
ORIGIN      
        1 gtagtgcccc tgcaggcgca tggtcggcac ggcgatgacg agcgccgcca cggccgccag
       61 ccctgccccg acgaccaggc cgatccatgg cgtgagcccg taggtcacga gcaggatcgt
      121 ggaggcgtag gcgccgacgc cgaagaaggc ggcgtggccg agcgagatct ggttggcgag
      181 cccaccgacg atgttccagg cctgcgccat ggccgcgaac aggaaggtga gcgtcagcac
      241 ccggatccag tagccgcgcg ggtcgagaag aagcggcagg accgcggcgg ctgcgaacag
      301 cccgatccac agcgcacgct tcatcgccgg ctcctgacga gaccctcggg ccgcagcgcc
      361 agcatgagga tgaagatcac gaacagcacg aggttctgga gctggatcgg gaacgcgagc
      421 gacgagaggg attggatggt gccgacggca aggcccccga ccacggctcc caggacgttg
      481 ccgaggccgc cgaggacgac gacggtgaac atcaggatga cgaattgccc tccgaccgtc
      541 ggcgatgcgg tcatgtaggg gaggatgatg gcgccgccga aggccgtgag gccgacgccg
      601 agcgcgaacg cgagggcgta catgcggtcc gcgtcgatgc ccatgagaag cgccgcgttg
      661 cggttctgcg ccgtcgcccg catggcgcgg ccgagccagc ttcgccgcat gaactgccac
      721 agggcgagcc ccgacaggag cgacagcacg aacgcggcga ggtagggcac gctcacgaac
      781 agcggcccga gcgacaggga catggtctgg tagggcgtgt tgacggagcg gaactgcgac
      841 ccgaacagca ggagcgcacc gttctccagc acgatgagca ggccgacggt caggaagatc
      901 tgcgcgaccg aaggcgccgc gagcacgcgc tggatcagga acctctgcac gagccagccg
      961 agcacgaacg ccgtcgcgaa cgcgagcggc gcggcgagga tggggtcgat ccccagcagc
     1021 gcccaggcga aataggcggc gaacatgccg atcatcagga actcggcatg ggcgaagttg
     1081 acgatgccca tgacgccgta gacgagcgtc aggccgatgg agatgacggc gtagacgccc
     1141 ccgatcagaa tgccgtcgag aatcgcctgg acgattgcca tggcgagacc agcagtatcg
     1201 tcaggaggtc ttctcccaaa cagcctcgcc cttggcgact tccttcggcc acacggtgac
     1261 gagctccttc ttgcgccact gcgtcatcac cgggaccgag agcgtattga gccccgtcgc
     1321 gtcgaactgg acggcgtcgc ccgtcatcgc cttggcccag ccgccctcga agcgcgcccc
     1381 gcgcaggtgc ttcaccacct cctcgggctt tgccgacttc gcccgctcga tcgcctgcgc
     1441 gagcacgtcg aggcagaccg cgtgctcgag cgcctcgtgg accatgaagt agccgtactt
     1501 cttgcggaac cgctcggtta gctcgggccg gtagtcgtag ttcgccggag cgatggacaa
     1561 gacgccttcg gcgaactcgc cgaggccctt ctcgaagtcc gggatgacgt agccggccgc
     1621 gccgccgacg gccggcatcg tgatgcgctg ctggcgcatg gtgcggatga tgagcaggct
     1681 gtcgttgagg tacgacaccg ggaacacggc ctgcgcgccc gagccgcgca gcttgttgat
     1741 gagcggcgtc gcgtccgtga tgccgagcgg gtaggcgtcg tccatgacga tctcgacgcc
     1801 ggcggccttg gcgcccgcgc gcaggccccc ggcctgggcg gtgccgtacg cggtgtcctc
     1861 gtacatgatg gcgaccttgc cgagcttctg accggccgcg cccgcgatgg cgagcgtgta
     1921 gtcgaactgc gccttgccga tggccgacgc cttggcgacg acctggaaga tgttcttgaa
     1981 gccgcgcccg gtgatctggt cggcgaacga catggtgagg agcgggatgt cacgccgttc
     2041 ggtcacttcc gagatggcga tggtcagcga cgacgcgaac gcgccaagga tggccgtgac
     2101 ctcgttctgc gtgatcagcc gctgcgctac ggtcgccgcc gtcgtc
//
LOCUS       DASQWN010000711         2554 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_390148, whole genome shotgun sequence.
ACCESSION   DASQWN010000711 DASQWN010000000
VERSION     DASQWN010000711.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2554)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2554)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2554
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_390148"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..456)
                     /locus_tag="VE686_13290"
     CDS             complement(<1..456)
                     /locus_tag="VE686_13290"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYY85461.1"
                     /translation="MTDVARPEGLQAQIAGVAEQAQTKAADLAKTAATAAQQRARELA
                     EEQKSAAAQQIEDVARTVDEAAAAVERALPQAAPYVRQAASTVRAASSALRDRSVDDL
                     IDMATEFARRRPAAVTGLSLFAGFAIARFLKASADRRDTAMQRRSARRRN"
     gene            706..1881
                     /locus_tag="VE686_13295"
     CDS             706..1881
                     /locus_tag="VE686_13295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009488899.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YihY/virulence factor BrkB family protein"
                     /protein_id="HYY85462.1"
                     /translation="MAQRAASNPSPVVALRAAGMLALVKVVRAIAPAPGPRAERRPNE
                     SRRERGSPNEGRTPGPDRNAEPSPGGDHAAQEPGRGREATSPAQLPARGWKDILWRVY
                     ERFGRDRVLAIAAGVTFYALLAIFPAIAALVSLYGLFAEPGTIQNHLATLGGFLPGGA
                     LEIIGEQVKRIASKPGGTLGFGFVLGLGTALWSSNAGMKALFDALNIVYEEEEKRGFI
                     KLNIVSLTFTLSAIVFILVAMGAVVVLPVVLKWLPVGGPIVEWTLSILRWPVLLALVM
                     AGLAAVYRWGPSRDAAEWKWITPGSIFAAVIWVAGSMLFSWYVSKFGNYNETYGSLGA
                     AIGFMTWIWLSTIIVLLGAEINAESEHQTAHDTTQGPEEPLGTRGAKMADTVGAAKA"
     gene            complement(1891..>2554)
                     /locus_tag="VE686_13300"
     CDS             complement(1891..>2554)
                     /locus_tag="VE686_13300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012252171.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0015499 - formate transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0015724 - formate transport [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="formate/nitrite transporter family protein"
                     /protein_id="HYY85463.1"
                     /translation="AGLTMGFSLVAEGLLRTHLPDAPWRDLIAHFGYTVGFLIVVLGR
                     QQLFTENTLTPILPLLYHRDAVTLGRVARLWAAVLVANVVGTWMFAQVIAHTEVFTPE
                     AKTAFREISQKSIAHPFATTVLKAIFAAWLIALMAWLLPAAETARPVVIIIITYVVAL
                     GEFAHIVAGSVDAFYLVTTGAASYGDYAWKFFVPTLIGNVIGGVTLVAVLNYGQVQSE
                     IE"
BASE COUNT          392 a          872 c          891 g          399 t
ORIGIN      
        1 gttgcggcgc cgagccgagc gcctctgcat ggcggtgtcg cggcggtctg cagatgcctt
       61 gaggaagcga gcgatggcga accccgcgaa cagcgacagg cccgtcacgg cggcgggccg
      121 ccgtcgcgcg aattcggtcg ccatgtcgat caagtcgtcg acgctgcgat cgcggagcgc
      181 cgaggaggcg gcccgaaccg tggaggccgc ctgccggacg taaggggccg cctgtggcag
      241 cgcccgctca acggcggcgg ctgcctcgtc taccgtgcgt gcgacgtcct cgatctgctg
      301 cgccgcggcg ctcttctgct cttcggcgag ctcgcgtgcc cgctgctgcg cggccgtcgc
      361 cgccgtcttg gcgagatcgg cggccttcgt ctgcgcctgc tcggcaaccc cggcgatctg
      421 ggcctgcagg ccttccggtc gggctacgtc cgtcatgatc cggcactcgc ttcatggcat
      481 cggggcagcg tcgcccgcgg tcgcgggtcg agcatcgcag ttggaacgcc gtctcgggcc
      541 ttacgttccg caccgcccat aaccttcgcg ccgagccggc cgattactgg ccgcgcaggt
      601 acaacgagcc gcccgacgca gctgaactct ccgcgatctc ggaaccggac cagtccgagc
      661 cttgttacgg caccgatcat cagacggtcg ggcccggaga cacgaatggc acagcgcgca
      721 gcatccaacc ccagccctgt cgtcgcgctg cgcgctgccg ggatgctggc gctggtgaaa
      781 gtggtgcgcg ccatcgcgcc tgccccggga ccgcgagccg agcgccggcc gaacgagagc
      841 cggcgtgagc gcgggagccc gaacgagggt cggacacccg gtcccgatcg caacgcggag
      901 ccctcgcccg gcggcgacca cgcggcacag gagcccgggc gcggccgcga agccacgtca
      961 ccggcgcaac ttccggcccg cggctggaaa gacatcctct ggcgcgtcta tgagcgcttc
     1021 gggcgcgatc gcgtgctcgc catcgcggcg ggggtgacct tctacgcgct ccttgcgatc
     1081 ttcccggcga tcgcggcgct cgtctcgctc tacggcctct tcgccgagcc cgggacgatc
     1141 cagaaccacc ttgccaccct cggcgggttc ctgccgggcg gcgccctcga gatcatcggc
     1201 gagcaggtga agcgcatcgc cagcaagccc ggcggcaccc tcgggttcgg attcgtgctc
     1261 ggcctcggga ccgcgttgtg gagctcgaac gccggcatga aggcgctctt cgacgcgttg
     1321 aacatcgtct acgaggagga ggagaagcgc ggcttcatca agctgaacat cgtctcgctg
     1381 acgttcacgc taagcgccat cgtcttcatc ctggtggcga tgggcgccgt cgtagtgctc
     1441 ccggttgtcc tcaagtggct cccggtcggc ggcccgatcg ttgaatggac cctgtcgatc
     1501 ctgcgctggc cggtcctgct cgcgctcgtg atggcgggcc tcgccgcggt gtaccgctgg
     1561 ggccccagcc gcgacgccgc cgagtggaag tggatcacgc cgggcagcat ctttgctgcg
     1621 gtgatctggg tcgccggctc gatgctgttc tcctggtacg tctccaagtt cggcaactac
     1681 aacgagacct acgggtccct cggggctgcc atcggcttca tgacgtggat ctggctctcg
     1741 acgatcatcg tcctgctcgg ggccgagatc aacgcggaga gcgagcacca gaccgcgcat
     1801 gacacgacgc aagggccgga agagccgctc ggtacccgag gcgccaagat ggccgacacg
     1861 gtcggtgctg cgaaggcgtg agcgcgagcg tcactcgatc tccgactgga cctggccgta
     1921 gttgaggacc gcgacgaggg tgacgccgcc gatgacgttg ccgatgaggg ttgggacgaa
     1981 gaacttccac gcgtagtcgc cgtacgaagc ggcccccgtc gtcacgaggt agaaggcgtc
     2041 gacggagccg gcgacgatgt gggcgaactc gccgagggcg acgacgtacg tgatgatgat
     2101 gatcacgacc ggccgtgccg tctcggcggc cggaaggagc cacgccatca gggcgatgag
     2161 ccaggcagcg aagatcgcct tgagcacggt tgttgcgaac ggatgcgcga tgctcttctg
     2221 gctgatctcc cggaaggccg tcttggcctc cggcgtgaac acctcggtgt gggcgatcac
     2281 ctgcgcgaac atccaggtgc cgacgacatt cgccacgagc acggcggccc acagccgcgc
     2341 gacccggccg agcgtcaccg cgtcgcggtg gtacagcagc ggcaggatcg gcgtcagcgt
     2401 gttctcggtg aacagctgct gacgtccgag caccacgatg aggaatccga ccgtgtagcc
     2461 gaagtgcgcg atgagatcgc gccagggcgc gtcgggcagg tgcgtgcgca ggagcccctc
     2521 ggccacgagc gagaacccca tggtcagtcc tgcg
//
LOCUS       DASQWN010000712         2340 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_390460, whole genome shotgun sequence.
ACCESSION   DASQWN010000712 DASQWN010000000
VERSION     DASQWN010000712.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2340)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2340)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2340
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_390460"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1948)
                     /locus_tag="VE686_13305"
     CDS             complement(<1..1948)
                     /locus_tag="VE686_13305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015824633.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PHP domain-containing protein"
                     /protein_id="HYY85464.1"
                     /translation="MSYAELQVTTHFSFLRGASSPADLFIRAHELGIPALAVVDRNSL
                     AGVIRAYEAAKETGVRLVVGCRLDLDDGASLLVYPTDRAAYGRLCRLLSLGKARAGKG
                     KCSLVLDDVAAWSEGLIAVLLTDQPDERLAADLDRVKKVFGGGAYCALTYRLEPNEPS
                     RLDAVAALARAAGVATVATGDVLYDRPDKRMLQDVVTCIRLKTTIDALGFRGERHADR
                     FLKSPLDMRRLFARHPDALARTMEIVERCRFSLEELAYQYPDETSGSGLTAQETLEQL
                     TWEGAATRYPQGVPDDVTRQLNHELTLIARMKYAPYFLTVNAIVRFARNEGILCQGRG
                     SAANSAVCYVLGVTSIDPVQQNLLFERFVSEERGEPPDIDVDFEHERREEVIQWIYEH
                     YGRTRAALTATVIRYRSRGAVREVGKALGIPEDVTAALAGLVWGWSIDGVGEDEVKEL
                     NLNLQDRRLRLTLELSRQLIGAPRHLSQHPGGFVLTRDRLDELVPIEPAAMEDRQIIE
                     WDKDDIDVLKFMKVDCLGLGMLSCMRRAFEGLAEHKGKRLGLADIPADDKPTYDMICK
                     ADTVGVFQIESRAQMAMLPRIKPKNFYDIVIQVAIVRPGPIQGDMVHPYLRRREGRET
                     PQYPRPELQRVLEKTLGVPLFQEQA"
     gene            complement(1945..>2340)
                     /locus_tag="VE686_13310"
     CDS             complement(1945..>2340)
                     /locus_tag="VE686_13310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010687185.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6504 family protein"
                     /protein_id="HYY85465.1"
                     /translation="LAANAPYRLTPVESRIPERSVRKAPPLAPSAGAPWPARLPRPPL
                     LVDPPEPIVALNSDQPPKMFTWRGKRRGVAKADGPERIYGEWWTCDDEMFLVRDYYRV
                     ETEAGERFWLFRDAPAAQGGRWFLHGVFA"
BASE COUNT          349 a          760 c          873 g          358 t
ORIGIN      
        1 tcgcctgctc ctggaagagc ggcacgccca gcgtcttttc cagcacgcgc tgcagctcag
       61 gccggggata ctgcggcgtc tcgcggcctt cgcgccgacg gaggtaggga tggaccatgt
      121 caccctggat cggacctggg cggacaatcg cgacctggat gacgatgtca tagaagttct
      181 tcggcttgat cctcgggagc atggccatct gggcgcggct ctcgatctgg aacacgccga
      241 ccgtgtcggc cttgcagatc atgtcgtagg tcggcttgtc gtccgcgggg atgtccgcga
      301 ggccgagcct cttgccttta tgctcggcca ggccctcgaa ggcacggcgc atgcagctca
      361 gcatgccgag cccgaggcag tcgaccttca tgaacttgag tacatcgatg tcgtccttgt
      421 cccactcgat gatctggcgg tcctccatgg cggcgggctc gatgggcacg agttcgtcga
      481 ggcggtcgcg ggtgagcacg aagccgccgg ggtgctgcga caggtgccgc ggcgcgccga
      541 tgagctggcg cgacagctcg agcgtcaggc gcaggcgccg gtcctgcagg tttaggttca
      601 gctccttgac ctcgtcctcg ccgaccccgt cgatgctcca gccccacacg agcccggcga
      661 gcgccgcggt cacgtcctcg gggatgccga gcgccttgcc gacctcgcgc acggcgccgc
      721 gcgagcggta gcggatgacg gtcgccgtga gcgcggcgcg ggtgcggccg tagtgctcgt
      781 agatccactg gatcacctcc tcgcgccgtt cgtgctcgaa atcgacgtcg atgtccggcg
      841 gctcgccgcg ctcctcggag acgaagcgct cgaagaggag gttctgctgc acggggtcga
      901 tggaggtgac gccaagcacg tagcagacgg ccgagttggc ggcgctgccc cgcccctggc
      961 acaggatgcc ctcgttacgg gcgaagcgca cgatcgcgtt cacggtgagg aagtacggcg
     1021 cgtacttcat gcgcgcgatg agggtgagct cgtgattgag ctggcgcgtc acgtcgtcgg
     1081 ggacgccttg cgggtagcgc gtcgccgcgc cctcccaggt cagctgctcg agggtctcct
     1141 gcgccgtgag acccgacccg gaggtctcgt cgggatattg atacgcgagc tcctcgaggg
     1201 agaagcggca gcgctcgacg atctccatcg tgcgcgcgag cgcatcggga tggcgcgcga
     1261 acaggcggcg catgtcgagc gggctcttga ggaaacggtc ggcgtggcgc tcgccgcgga
     1321 agccgagcgc gtcgatggtg gtcttgaggc ggatgcaggt gacgacgtcc tgcagcatgc
     1381 gcttgtcggg ccggtcgtag agcacgtcgc ccgtcgcgac ggtcgccacg ccggccgcgc
     1441 gggcaagggc ggcgacggca tcgaggcgcg aaggctcgtt cggctcgagg cggtaggtga
     1501 gggcgcaata ggcgccgccg ccgaacacct tcttgacgcg gtcgagatcc gcagcgaggc
     1561 gctcgtccgg ctggtccgtg aggaggacgg cgatgaggcc ctcgctccag gccgccacgt
     1621 cgtccaagac gaggctgcac ttccccttgc cggcgcgggc cttcccgagc gagaggagcc
     1681 ggcacaggcg gccgtaggcg gcgcggtccg tcggatagac gaggagcgag gcgccgtcgt
     1741 cgaggtcgag gcggcacccg acgacgaggc gcacgccggt ctccttggca gcctcatagg
     1801 cgcggatcac acccgcaagc gagttgcggt cgacgacggc gagcgccggg atgccgagct
     1861 cgtgggcgcg gatgaacagg tcggccgggc ttgaggcgcc gcgcaggaac gagaaatgcg
     1921 tcgtgacctg cagctcggcg tagctcacgc gaacacccca tgcaggaacc agcgcccgcc
     1981 ctgggcggcc ggcgcgtcgc ggaacagcca gaagcgctcg cctgcctcgg tctcgacccg
     2041 gtaatagtcg cgcaccagga acatctcgtc gtcgcaggtc caccactcgc cgtagatgcg
     2101 ctcggggccg tccgccttgg cgacgccgcg acgcttgccg cgccaggtga acatcttcgg
     2161 tggctggtcg gagttcaggg cgacgatggg ctcgggtgga tcgacgagga gcggcggtcg
     2221 cggcagccgc gcgggccatg gcgcgccggc ggagggcgcg agcgggggcg ccttgcgcac
     2281 cgagcgctcc gggatgcggc tctcgacggg agtgaggcga tacggcgcgt tcgccgcaag
//
LOCUS       DASQWN010000713         2356 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Beijerinckiaceae bacterium isolate SMAG_U11014
            k141_395989, whole genome shotgun sequence.
ACCESSION   DASQWN010000713 DASQWN010000000
VERSION     DASQWN010000713.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946491
            Sequence Read Archive: SRR5919112
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Beijerinckiaceae bacterium (soil metagenome)
  ORGANISM  Beijerinckiaceae bacterium
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Beijerinckiaceae.
REFERENCE   1  (bases 1 to 2356)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2356)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,665
            CDSs (total)                      :: 2,640
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 25
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2356
                     /organism="Beijerinckiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_395989"
                     /isolate="SMAG_U11014"
                     /isolation_source="soil"
                     /db_xref="taxon:1978229"
                     /environmental_sample
                     /lat_lon="35.11641 S 141.97633 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..396)
                     /locus_tag="VE686_13315"
     CDS             complement(<1..396)
                     /locus_tag="VE686_13315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012322222.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HYY85466.1"
                     /translation="MTPTVEALFFDVFGTLVDWRTGVAREAERILAPLGHKLDWSAFA
                     DAWRDEYQPGMEDVRSGKIPFSKLDVLHRRNLERILPRFELERLSDEALRELTLAWHR
                     LPAWPEVPDALRRLRERYRLAPVSNGNISL"
     gene            686..2224
                     /locus_tag="VE686_13320"
                     /pseudo
     CDS             686..2224
                     /locus_tag="VE686_13320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012385382.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0003984 - acetolactate synthase activity
                     [Evidence IEA];
                     GO_function: GO:0030976 - thiamine pyrophosphate binding
                     [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA];
                     GO_process: GO:0009082 - branched-chain amino acid
                     biosynthetic process [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="acetolactate synthase 3 large subunit"
     gene            complement(2282..2347)
                     /locus_tag="VE686_13325"
                     /pseudo
     CDS             complement(2282..2347)
                     /locus_tag="VE686_13325"
                     /inference="COORDINATES: protein motif:HMM:NF014794.4"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
BASE COUNT          416 a          819 c          754 g          367 t
ORIGIN      
        1 gagggagatg ttgccgttcg agaccggcgc gagccggtag cgctcgcgca agcgccgcag
       61 cgcgtcgggc acctcgggcc acgccgggag ccggtgccac gcgagggtca gctcgcgcag
      121 ggcctcgtca gagagcctct cgagctcgaa gcgcggcagg atgcgctcga ggttgcgccg
      181 gtgcagcacg tcgagcttgg agaacgggat cttgcccgag cgcacgtcct ccatgccggg
      241 ctggtactcg tcccgccacg catccgcgaa ggcgctccag tcgagcttgt ggccgagcgg
      301 cgccaggatg cgctccgcct cccgcgccac tccggtgcgc cagtcgacca gggtcccgaa
      361 gacgtcgaag aacagggcct ctacggtcgg cgtcatctcg tcctccggcg tgtccgggcg
      421 gtcttaccac gccccgcatg gaccggggag ctgcaacgca atgcttgacc aagacggggc
      481 catccggtag cgtcccgctc aactttttgc acccaggcgg gtccgcaatg ctcacgctta
      541 ttcttgtacc ggaggcgcta tcgacggagc gggtctgacc cgcacgatcc ggcgatggcg
      601 cgcgaggccc ccttcggggc cttttttatt gcccgcagca caccccaatg cccgacgaga
      661 cgacgagacg gacggagcga ctgagatgac cgagaccatg accggcgccg agatggtgat
      721 ccgcgccctc caggatcagg gggtcgagca cgtgttcggc tatccgggcg gcgccgtgct
      781 gccgatctac gacgccctct tccatcagga caccatcgag cacgtgctcg tccggcacga
      841 gcagggcgcc gtgcatgccg ccgagggcta cgcgcgctcc tccggcaagg tcggcgtcgt
      901 cctcgtgacc tcgggccccg gcgccaccaa cgccgtcacg ggcctcaccg acgccatgat
      961 ggattccgtg ccgatcgtct gcatcaccgg ccaggtgccg acgcacctca tcggcaccga
     1021 cgcgttccag gagtgcgaca cggtcggcat cacgcgccac tgcacgaagc acaactacct
     1081 ggtcaaatcg atcgaggacc tgccgcgcat cctgcacgag gccttcttcg tggccgcgaa
     1141 cggccgcccc ggcccggtcg tcatcgatct gccgaaggac atccagttca aggccggcac
     1201 ctacgtgcgg ccgacctcga acgggcacaa gacctatcag ccgcaggtca agggcgacct
     1261 cgagaagatc aaggccgcga tcgcgctgat aggtcacgcc aagcggccgg tgttctatac
     1321 cggcggcggc gtcatcaact cgggcccgca tgcggcggcc ctgctgcgcg agctcgttcg
     1381 cctcaccggc ttcccgatca cctcgacgct gatggggctc ggcgcctatc cggcctcgga
     1441 cccgcagttc ctcggcatgc tcggcatgca cgggacctac gaggcgaacc tcgccatgca
     1501 cgactgcgat ctcatgatcg ccatcggggc gcgcttcgat gaccgcatca cgggccggct
     1561 cgacgccttc tcgcccgggt cgaagaagat ccacatcgac atcgacccat cgtcgatcaa
     1621 caagaacgtc aaagccgaca ttggcatcat cggcgacgtc gggcacgtgc tcgaggacat
     1681 gctgcgggtg tggaaggagc tgaagccgca ggtcgacaag gcggcgctca aggattggtg
     1741 gtcgcagatc gagggctggc gggcgcgcaa ttgcctcgcc taccggaact caaacgagct
     1801 gatcaagccg caatacgcgg tgcagcgcct ctacgagctg accaaggacc gcgatgtcta
     1861 catcacgacc gaagtgggtc agcaccagat gtgggccgcg cagttcttca aattcgagga
     1921 tccgcggcgt tggatgacct cgggcggcct cggcaccatg ggctacggcc tgccggccgc
     1981 catcggcaca cagctcgcgc atccgaaatc gctcgtcatc gacatcgccg gcgaggcttc
     2041 gatcctcatg aacatgcagg agatgtcgac cgccgtgcag caccggctgc ccgtcaagat
     2101 cttcatcctc aacaacgaat acatggggat ggtgcggcag tggcaggagc tgctgcacgg
     2161 cggccgctac tcggagagct acagcgacgc cctgccggat ttcgtcaagc tggccgaagc
     2221 ctatcgcggc gtcgagctcg ttcggatcgc tgcagcgcat gccgaccgcc ccgtaggcct
     2281 cggccagctt cacgaagtcc ggcaggctct ccgagtagct ctgcgagtag cgcccgccgt
     2341 gcagcagctc ctgcca
//
